-- dump date 20140620_055651 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 chrom_position -- field 4 chromosome -- field 5 codon_start -- field 6 contig -- field 7 description -- field 8 end_pos -- field 9 gene -- field 10 gene_id -- field 11 name -- field 12 organism -- field 13 product -- field 14 protein_id -- field 15 start_pos -- field 16 strand -- field 17 taxid -- field 18 type -- header -- id GI chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_005250569.1 378987405 190..255 1 NC_016863.1 similar to Escherichia coli thr operon leader peptide (AAC73112.1); thr operon leader peptide 255 thrL 990282000001 thrL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thr operon leader peptide YP_005250569.1 190 D 990282 CDS YP_005250570.1 378987406 338..2800 1 NC_016863.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 2800 thrA 990282000002 thrA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional aspartokinase I/homoserine dehydrogenase I YP_005250570.1 338 D 990282 CDS YP_005250571.1 378987407 2802..3731 1 NC_016863.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 3731 thrB 990282000003 thrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 homoserine kinase YP_005250571.1 2802 D 990282 CDS YP_005250572.1 378987408 3735..5021 1 NC_016863.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 5021 thrC 990282000004 thrC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 threonine synthase YP_005250572.1 3735 D 990282 CDS YP_005250573.1 378987409 complement(5115..5888) 1 NC_016863.1 hypothetical protein 5888 yaaA 990282000005 yaaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250573.1 5115 R 990282 CDS YP_005250574.1 378987410 complement(5967..7397) 1 NC_016863.1 similar to Escherichia coli inner membrane transport protein (AAC73118.1); AGCS family; putative alanine/glycine transport protein 7397 yaaJ 990282000006 yaaJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative alanine/glycine transport protein YP_005250574.1 5967 R 990282 CDS YP_005250575.1 378987411 7666..8619 1 NC_016863.1 Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 8619 talB 990282000007 talB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transaldolase B YP_005250575.1 7666 D 990282 CDS YP_005250576.1 378987412 8730..9320 1 NC_016863.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 9320 mogA 990282000008 mogA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 molybdenum cofactor biosynthesis protein MogA YP_005250576.1 8730 D 990282 CDS YP_005250577.1 378987413 complement(9377..9943) 1 NC_016863.1 hypothetical protein 9943 yaaH 990282000009 yaaH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250577.1 9377 R 990282 CDS YP_005250578.1 378987414 complement(10093..10806) 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC73122.1); regulator for sigma H promoters/sigma 32 promoters permitting growth at high temperature; hypothetical protein 10806 htgA 990282000010 htgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250578.1 10093 R 990282 CDS YP_005250579.1 378987415 complement(10842..11246) 1 NC_016863.1 hypothetical protein 11246 yaaI 990282000011 yaaI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250579.1 10842 R 990282 CDS YP_005250580.1 378987416 11594..13510 1 NC_016863.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 13510 dnaK 990282000012 dnaK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 molecular chaperone DnaK YP_005250580.1 11594 D 990282 CDS YP_005250581.1 378987417 13596..14735 1 NC_016863.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 14735 dnaJ 990282000013 dnaJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chaperone protein DnaJ YP_005250581.1 13596 D 990282 CDS YP_005250582.1 378987418 15015..15962 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73704.1); LysR family; putative transcriptional regulator 15962 990282000014 STMUK_0014 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005250582.1 15015 D 990282 CDS YP_005250583.1 378987419 16089..16433 1 NC_016863.1 putative bacteriophage protein 16433 990282000015 STMUK_0015 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative bacteriophage protein YP_005250583.1 16089 D 990282 CDS YP_005250584.1 378987420 complement(16494..17027) 1 NC_016863.1 hypothetical protein 17027 990282000016 STMUK_0016 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250584.1 16494 R 990282 CDS YP_005250585.1 378987421 complement(17044..17487) 1 NC_016863.1 similar to Escherichia coli putative sensory transducer (AAC75886.1); hypothetical protein 17487 990282000017 STMUK_0017 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250585.1 17044 R 990282 CDS YP_005250586.1 378987422 17868..19967 1 NC_016863.1 putative exochitinase 19967 990282000018 STMUK_0018 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative exochitinase YP_005250586.1 17868 D 990282 CDS YP_005250587.1 378987423 20059..23055 1 NC_016863.1 putative hydroxymethyltransferase 23055 990282000019 STMUK_0019 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydroxymethyltransferase YP_005250587.1 20059 D 990282 CDS YP_005250588.1 378987424 23336..24040 1 NC_016863.1 putative cytoplasmic protein 24040 990282000020 STMUK_0020 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250588.1 23336 D 990282 CDS YP_005250589.1 378987425 24470..25012 1 NC_016863.1 fimbrial subunit (gi|4959511); fimbrial subunit 25012 bcfA 990282000021 bcfA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fimbrial subunit YP_005250589.1 24470 D 990282 CDS YP_005250590.1 378987426 25113..25799 1 NC_016863.1 fimbrial chaperone (gi|4959512); fimbrial chaparone 25799 bcfB 990282000022 bcfB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fimbrial chaparone YP_005250590.1 25113 D 990282 CDS YP_005250591.1 378987427 25804..28425 1 NC_016863.1 bovine colonization factor BcfC (gi|4530570); fimbrial usher 28425 bcfC 990282000023 bcfC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fimbrial usher YP_005250591.1 25804 D 990282 CDS YP_005250592.1 378987428 28426..29433 1 NC_016863.1 fimbrial subunit (gi|4959514); fimbrial subunit 29433 bcfD 990282000024 bcfD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fimbrial subunit YP_005250592.1 28426 D 990282 CDS YP_005250593.1 378987429 29434..29979 1 NC_016863.1 fimbrial subunit (gi|4959515); fimbrial subunit 29979 bcfE 990282000025 bcfE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fimbrial subunit YP_005250593.1 29434 D 990282 CDS YP_005250594.1 378987430 29995..30513 1 NC_016863.1 fimbrial subunit (gi|4959516); fimbrial subunit 30513 bcfF 990282000026 bcfF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fimbrial subunit YP_005250594.1 29995 D 990282 CDS YP_005250595.1 378987431 30479..31210 1 NC_016863.1 fimbrial chaperone (gi|4959517); fimbrial chaparone 31210 bcfG 990282000027 bcfG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fimbrial chaparone YP_005250595.1 30479 D 990282 CDS YP_005250596.1 378987432 31275..32120 1 NC_016863.1 putative thiol-disulfide isomerase 32120 bcfH 990282000028 bcfH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative thiol-disulfide isomerase YP_005250596.1 31275 D 990282 CDS YP_005250597.1 378987433 32159..32446 1 NC_016863.1 similar to hypothetical protein STM0028.1n (Pid: NP_945153.1).; hypothetical protein 32446 990282000029 STMUK_0029 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250597.1 32159 D 990282 CDS YP_005250598.1 378987434 complement(32546..32995) 1 NC_016863.1 putative transcriptional regulator MarT (gi|4324612); putative transcriptional regulator 32995 990282000030 STMUK_0030 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005250598.1 32546 R 990282 CDS YP_005250599.1 378987435 33365..34369 1 NC_016863.1 similar to LeuO (gi|6650098); LysR family; putative transcriptional regulator 34369 990282000031 STMUK_0031 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005250599.1 33365 D 990282 CDS YP_005250600.1 378987436 complement(34377..34817) 1 NC_016863.1 putative transcriptional regulator MarT (gi|4324612); putative transcriptional regulator 34817 990282000032 STMUK_0032 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005250600.1 34377 R 990282 CDS YP_005250601.1 378987437 35340..37058 1 NC_016863.1 putative arylsulfatase 37058 990282000033 STMUK_0033 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative arylsulfatase YP_005250601.1 35340 D 990282 CDS YP_005250602.1 378987438 complement(37104..38675) 1 NC_016863.1 similar to Escherichia coli UDP-sugar hydrolase (5'-nucleotidase) (AAC73582.1); putative 5'-nucleotidase 38675 990282000034 STMUK_0034 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative 5'-nucleotidase YP_005250602.1 37104 R 990282 CDS YP_005250603.1 378987439 complement(38774..39535) 1 NC_016863.1 similar to Escherichia coli putative sugar hydrolase (AAC75461.1); putative outer membrane/exported protein 39535 990282000035 STMUK_0035 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane/exported protein YP_005250603.1 38774 R 990282 CDS YP_005250604.1 378987440 40132..41625 1 NC_016863.1 similar to Escherichia coli putative sulfatase (AAC76701.1); putative arylsulfatase 41625 990282000036 STMUK_0036 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative arylsulfatase YP_005250604.1 40132 D 990282 CDS YP_005250605.1 378987441 41724..42914 1 NC_016863.1 similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); putative arylsulfatase regulator 42914 990282000037 STMUK_0037 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative arylsulfatase regulator YP_005250605.1 41724 D 990282 CDS YP_005250606.1 378987442 42933..44186 1 NC_016863.1 putative cytoplasmic protein 44186 990282000038 STMUK_0038 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250606.1 42933 D 990282 CDS YP_005250607.1 378987443 44313..46028 1 NC_016863.1 putative arylsulfatase 46028 990282000039 STMUK_0039 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative arylsulfatase YP_005250607.1 44313 D 990282 CDS YP_005250608.1 378987444 46191..47357 1 NC_016863.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 47357 nhaA 990282000040 nhaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pH-dependent sodium/proton antiporter YP_005250608.1 46191 D 990282 CDS YP_005250609.1 378987445 47419..48318 1 NC_016863.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 48318 nhaR 990282000041 nhaR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional activator NhaR YP_005250609.1 47419 D 990282 CDS YP_005250610.1 378987446 complement(48373..50412) 1 NC_016863.1 putative glycosyl hydrolase 50412 990282000042 STMUK_0042 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyl hydrolase YP_005250610.1 48373 R 990282 CDS YP_005250611.1 378987447 complement(50452..51825) 1 NC_016863.1 similar to Escherichia coli putative permease (AAC76681.1); putative sodium galactoside symporter 51825 990282000043 STMUK_0043 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sodium galactoside symporter YP_005250611.1 50452 R 990282 CDS YP_005250612.1 378987448 complement(52281..52544) 1 NC_016863.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 52544 rpsT 990282000044 rpsT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S20 YP_005250612.1 52281 R 990282 CDS YP_005250613.1 378987449 52650..52865 1 NC_016863.1 putative cytoplasmic protein 52865 yaaY 990282000045 yaaY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250613.1 52650 D 990282 CDS YP_005250614.1 378987450 52873..53811 1 NC_016863.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 53811 ribC 990282000046 ribC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional riboflavin kinase/FMN adenylyltransferase YP_005250614.1 52873 D 990282 CDS YP_005250615.1 378987451 53856..56690 1 NC_016863.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine; isoleucyl-tRNA synthetase 56690 ileS 990282000047 ileS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 isoleucyl-tRNA synthetase YP_005250615.1 53856 D 990282 CDS YP_005250616.1 378987452 56690..57190 1 NC_016863.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 57190 lspA 990282000048 lspA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipoprotein signal peptidase YP_005250616.1 56690 D 990282 CDS YP_005250617.1 378987453 57345..57794 1 NC_016863.1 similar to Escherichia coli FKBX-type 16KD peptidyl-prolyl cis-trans isomerase; rotamase (AAC73139.1); FKBP-type peptidyl-prolyl cis-trans isomerase 57794 slpA 990282000049 slpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 FKBP-type peptidyl-prolyl cis-trans isomerase YP_005250617.1 57345 D 990282 CDS YP_005250618.1 378987454 57797..58747 1 NC_016863.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 58747 lytB 990282000050 lytB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_005250618.1 57797 D 990282 CDS YP_005250619.1 378987455 58947..60149 1 NC_016863.1 putative nitrite reductase 60149 990282000051 STMUK_0051 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative nitrite reductase YP_005250619.1 58947 D 990282 CDS YP_005250620.1 378987456 60165..61085 1 NC_016863.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 61085 rihC 990282000052 rihC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonucleoside hydrolase RihC YP_005250620.1 60165 D 990282 CDS YP_005250621.1 378987457 complement(61107..61793) 1 NC_016863.1 similar to Escherichia coli sequence similarity to Shigella regulator (AAC73721.1); sensor for citrate; putative transcriptional regulator 61793 990282000053 STMUK_0053 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005250621.1 61107 R 990282 CDS YP_005250622.1 378987458 complement(61795..63414) 1 NC_016863.1 similar to Escherichia coli putative sensor-type protein (AAC73720.1); histidine kinase for citrate; putative transcriptional regulator 63414 990282000054 STMUK_0054 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005250622.1 61795 R 990282 CDS YP_005250623.1 378987459 complement(63549..64850) 1 NC_016863.1 oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); putative oxalacetate decarboxylase subunit beta 64850 990282000055 STMUK_0055 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxalacetate decarboxylase subunit beta YP_005250623.1 63549 R 990282 CDS YP_005250624.1 378987460 complement(64863..66638) 1 NC_016863.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 66638 990282000056 STMUK_0056 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 oxaloacetate decarboxylase YP_005250624.1 64863 R 990282 CDS YP_005250625.1 378987461 complement(66655..66894) 1 NC_016863.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 66894 990282000057 STMUK_0057 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 oxaloacetate decarboxylase subunit gamma YP_005250625.1 66655 R 990282 CDS YP_005250626.1 378987462 complement(67053..68393) 1 NC_016863.1 putative citrate-sodium symporter 68393 990282000058 STMUK_0058 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative citrate-sodium symporter YP_005250626.1 67053 R 990282 CDS YP_005250627.1 378987463 68638..69681 1 NC_016863.1 similar to Escherichia coli citrate lyase synthetase; citrate (pro-3S)-lyase ligase (AAC73719.1); putative citrate lyase synthetase 69681 citC2 990282000059 citC2 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative citrate lyase synthetase YP_005250627.1 68638 D 990282 CDS YP_005250628.1 378987464 69711..70004 1 NC_016863.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 70004 citD2 990282000060 citD2 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 citrate lyase subunit gamma YP_005250628.1 69711 D 990282 CDS YP_005250629.1 378987465 70001..70870 1 NC_016863.1 similar to Escherichia coli citrate lyase beta chain; acyl lyase subunit (AAC73717.1); putative citrate lyase beta chain 70870 citE2 990282000061 citE2 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative citrate lyase beta chain YP_005250629.1 70001 D 990282 CDS YP_005250630.1 378987466 70881..72401 1 NC_016863.1 similar to Escherichia coli citrate lyase alpha chain (AAC73716.1); putative citrate lyase alpha chain/citrate-ACP transferase 72401 citF2 990282000062 citF2 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative citrate lyase alpha chain/citrate-ACP transferase YP_005250630.1 70881 D 990282 CDS YP_005250631.1 378987467 72401..72952 1 NC_016863.1 putative cytoplasmic protein 72952 citX2 990282000063 citX2 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250631.1 72401 D 990282 CDS YP_005250632.1 378987468 72930..73838 1 NC_016863.1 putative modifier of citrate lyase protein; triphosphoribosyl-dephospho-CoA synthase 73838 citG2 990282000064 citG2 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 triphosphoribosyl-dephospho-CoA synthase YP_005250632.1 72930 D 990282 CDS YP_005250633.1 378987469 74018..74839 1 NC_016863.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 74839 dapB 990282000065 dapB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dihydrodipicolinate reductase YP_005250633.1 74018 D 990282 CDS YP_005250634.1 378987470 complement(74965..75240) 1 NC_016863.1 putative viral protein 75240 990282000066 STMUK_0066 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative viral protein YP_005250634.1 74965 R 990282 CDS YP_005250635.1 378987471 75882..77030 1 NC_016863.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 77030 carA 990282000067 carA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 carbamoyl phosphate synthase small subunit YP_005250635.1 75882 D 990282 CDS YP_005250636.1 378987472 77049..80276 1 NC_016863.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 80276 carB 990282000068 carB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 carbamoyl phosphate synthase large subunit YP_005250636.1 77049 D 990282 CDS YP_005250637.1 378987473 80550..80945 1 NC_016863.1 regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons; DNA-binding transcriptional activator CaiF 80945 caiF 990282000069 caiF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator CaiF YP_005250637.1 80550 D 990282 CDS YP_005250638.1 378987474 complement(81022..81618) 1 NC_016863.1 involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE 81618 caiE 990282000070 caiE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 carnitine operon protein CaiE YP_005250638.1 81022 R 990282 CDS YP_005250639.1 378987475 complement(81727..82512) 1 NC_016863.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase 82512 caiD 990282000071 caiD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 carnitinyl-CoA dehydratase YP_005250639.1 81727 R 990282 CDS YP_005250640.1 378987476 complement(82566..84119) 1 NC_016863.1 similar to Escherichia coli probable crotonobetaine/carnitine-CoA ligase (AAC73148.1); putative crotonobetaine/carnitine-CoA ligase 84119 caiC 990282000072 caiC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative crotonobetaine/carnitine-CoA ligase YP_005250640.1 82566 R 990282 CDS YP_005250641.1 378987477 complement(84182..85399) 1 NC_016863.1 catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase 85399 caiB 990282000073 caiB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 crotonobetainyl-CoA:carnitine CoA-transferase YP_005250641.1 84182 R 990282 CDS YP_005250642.1 378987478 complement(85511..86653) 1 NC_016863.1 catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase 86653 caiA 990282000074 caiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 crotonobetainyl-CoA dehydrogenase YP_005250642.1 85511 R 990282 CDS YP_005250643.1 378987479 complement(86688..88205) 1 NC_016863.1 catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter 88205 caiT 990282000075 caiT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-carnitine/gamma-butyrobetaine antiporter YP_005250643.1 86688 R 990282 CDS YP_005250644.1 378987480 88686..89456 1 NC_016863.1 required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; putative electron transfer flavoprotein FixA 89456 fixA 990282000076 fixA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative electron transfer flavoprotein FixA YP_005250644.1 88686 D 990282 CDS YP_005250645.1 378987481 89472..90413 1 NC_016863.1 involved in electron transfer during carnitine metabolism; putative electron transfer flavoprotein FixB 90413 fixB 990282000077 fixB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative electron transfer flavoprotein FixB YP_005250645.1 89472 D 990282 CDS YP_005250646.1 378987482 90463..91749 1 NC_016863.1 FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; putative oxidoreductase FixC 91749 fixC 990282000078 fixC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidoreductase FixC YP_005250646.1 90463 D 990282 CDS YP_005250647.1 378987483 91746..92033 1 NC_016863.1 similar to Escherichia coli putative ferredoxin (AAC73155.1); carnitine metabolism; putative ferredoxin 92033 fixX 990282000079 fixX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ferredoxin YP_005250647.1 91746 D 990282 CDS YP_005250648.1 378987484 92180..93520 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC73156.1); MFS family; putative transport protein 93520 yaaU 990282000080 yaaU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005250648.1 92180 D 990282 CDS YP_005250649.1 378987485 93609..93839 1 NC_016863.1 putative outer membrane lipoprotein 93839 990282000081 STMUK_0081 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005250649.1 93609 D 990282 CDS YP_005250650.1 378987486 94133..94549 1 NC_016863.1 hypothetical protein 94549 990282000082 STMUK_0082 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250650.1 94133 D 990282 CDS YP_005250651.1 378987487 complement(94773..95063) 1 NC_016863.1 hypothetical protein 95063 990282000083 STMUK_0083 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250651.1 94773 R 990282 CDS YP_005250652.1 378987488 95273..95467 1 NC_016863.1 putative inner membrane protein 95467 990282000084 STMUK_0084 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005250652.1 95273 D 990282 CDS YP_005250653.1 378987489 95961..97850 1 NC_016863.1 similar to Escherichia coli putative sulfatase (AAC76701.1); putative sulfatase 97850 990282000085 STMUK_0085 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sulfatase YP_005250653.1 95961 D 990282 CDS YP_005250654.1 378987490 98257..98787 1 NC_016863.1 Required for full activity of KefC, a potassium-proton antiporter; glutathione-regulated potassium-efflux system ancillary protein KefF 98787 yabF 990282000086 yabF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutathione-regulated potassium-efflux system ancillary protein KefF YP_005250654.1 98257 D 990282 CDS YP_005250655.1 378987491 98780..100642 1 NC_016863.1 transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 100642 kefC 990282000087 kefC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutathione-regulated potassium-efflux system protein KefC YP_005250655.1 98780 D 990282 CDS YP_005250656.1 378987492 100841..101320 1 NC_016863.1 catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 101320 folA 990282000088 folA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dihydrofolate reductase YP_005250656.1 100841 D 990282 CDS YP_005250657.1 378987493 complement(101426..102274) 1 NC_016863.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 102274 apaH 990282000089 apaH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 diadenosine tetraphosphatase YP_005250657.1 101426 R 990282 CDS YP_005250658.1 378987494 complement(102285..102662) 1 NC_016863.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 102662 apaG 990282000090 apaG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ApaG protein YP_005250658.1 102285 R 990282 CDS YP_005250659.1 378987495 complement(102665..103486) 1 NC_016863.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 103486 ksgA 990282000091 ksgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dimethyladenosine transferase YP_005250659.1 102665 R 990282 CDS YP_005250660.1 378987496 complement(103483..104472) 1 NC_016863.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 104472 pdxA 990282000092 pdxA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxythreonine-4-phosphate dehydrogenase YP_005250660.1 103483 R 990282 CDS YP_005250661.1 378987497 complement(104472..105758) 1 NC_016863.1 Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; peptidyl-prolyl cis-trans isomerase SurA 105758 surA 990282000093 surA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptidyl-prolyl cis-trans isomerase SurA YP_005250661.1 104472 R 990282 CDS YP_005250662.1 378987498 complement(105812..108172) 1 NC_016863.1 determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 108172 imp 990282000094 imp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 organic solvent tolerance protein YP_005250662.1 105812 R 990282 CDS YP_005250663.1 378987499 108426..109238 1 NC_016863.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid; Dna-J like membrane chaperone protein 109238 djlA 990282000095 djlA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Dna-J like membrane chaperone protein YP_005250663.1 108426 D 990282 CDS YP_005250664.1 378987500 complement(109333..109992) 1 NC_016863.1 catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A 109992 rluA 990282000096 rluA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 23S rRNA/tRNA pseudouridine synthase A YP_005250664.1 109333 R 990282 CDS YP_005250665.1 378987501 complement(110004..112910) 1 NC_016863.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on; ATP-dependent helicase HepA 112910 hepA 990282000097 hepA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent helicase HepA YP_005250665.1 110004 R 990282 CDS YP_005250666.1 378987502 complement(113084..115435) 1 NC_016863.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 115435 polB 990282000098 polB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase II YP_005250666.1 113084 R 990282 CDS YP_005250667.1 378987503 complement(115479..116099) 1 NC_016863.1 hypothetical protein 116099 990282000099 STMUK_0099 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250667.1 115479 R 990282 CDS YP_005250668.1 378987504 116301..116603 1 NC_016863.1 putative inner membrane protein 116603 990282000100 STMUK_0100 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005250668.1 116301 D 990282 CDS YP_005250669.1 378987505 116818..117237 1 NC_016863.1 putative cytoplasmic protein 117237 990282000101 STMUK_0101 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250669.1 116818 D 990282 CDS YP_005250670.1 378987506 complement(117243..117938) 1 NC_016863.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 117938 araD 990282000102 araD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-ribulose-5-phosphate 4-epimerase YP_005250670.1 117243 R 990282 CDS YP_005250671.1 378987507 complement(118079..119581) 1 NC_016863.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 119581 araA 990282000103 araA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-arabinose isomerase YP_005250671.1 118079 R 990282 CDS YP_005250672.1 378987508 complement(119592..121301) 1 NC_016863.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 121301 araB 990282000104 araB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribulokinase YP_005250672.1 119592 R 990282 CDS YP_005250673.1 378987509 121642..122487 1 NC_016863.1 positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 122487 araC 990282000105 araC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator AraC YP_005250673.1 121642 D 990282 CDS YP_005250674.1 378987510 122606..123373 1 NC_016863.1 DedA family; hypothetical protein 123373 yabI 990282000106 yabI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250674.1 122606 D 990282 CDS YP_005250675.1 378987511 complement(123412..124119) 1 NC_016863.1 with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit 124119 thiQ 990282000107 thiQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiamine transporter ATP-binding subunit YP_005250675.1 123412 R 990282 CDS YP_005250676.1 378987512 complement(124103..125713) 1 NC_016863.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 125713 sfuB 990282000108 sfuB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiamine transporter membrane protein YP_005250676.1 124103 R 990282 CDS YP_005250677.1 378987513 complement(125689..126672) 1 NC_016863.1 part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit 126672 tbpA 990282000109 tbpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiamine transporter substrate binding subunit YP_005250677.1 125689 R 990282 CDS YP_005250678.1 378987514 complement(126850..128508) 1 NC_016863.1 activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR 128508 yabN 990282000110 yabN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator SgrR YP_005250678.1 126850 R 990282 CDS YP_005250679.1 378987515 128601..128723 1 NC_016863.1 similar to hypothetical protein SC0104 (Pid: YP_215091.1).; hypothetical protein 128723 990282000111 STMUK_0111 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250679.1 128601 D 990282 CDS YP_005250680.1 378987516 complement(129059..129664) 1 NC_016863.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 129664 leuD 990282000112 leuD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 isopropylmalate isomerase small subunit YP_005250680.1 129059 R 990282 CDS YP_005250681.1 378987517 complement(129675..131075) 1 NC_016863.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 131075 leuC 990282000113 leuC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 isopropylmalate isomerase large subunit YP_005250681.1 129675 R 990282 CDS YP_005250682.1 378987518 complement(131078..132169) 1 NC_016863.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 132169 leuB 990282000114 leuB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-isopropylmalate dehydrogenase YP_005250682.1 131078 R 990282 CDS YP_005250683.1 378987519 complement(132169..133740) 1 NC_016863.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 133740 leuA 990282000115 leuA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-isopropylmalate synthase YP_005250683.1 132169 R 990282 CDS YP_005250684.1 378987520 complement(133828..133914) 1 NC_016863.1 involved in attenuation control of the leuABCD operon in leucine biosynthesis; leu operon leader peptide 133914 leuL 990282000116 leuL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 leu operon leader peptide YP_005250684.1 133828 R 990282 CDS YP_005250685.1 378987521 134571..135515 1 NC_016863.1 activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 135515 leuO 990282000117 leuO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 leucine transcriptional activator YP_005250685.1 134571 D 990282 CDS YP_005250686.1 378987522 135900..137561 1 NC_016863.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit 137561 ilvI 990282000118 ilvI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetolactate synthase 3 catalytic subunit YP_005250686.1 135900 D 990282 CDS YP_005250687.1 378987523 137564..138055 1 NC_016863.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity; acetolactate synthase 3 regulatory subunit 138055 ilvH 990282000119 ilvH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetolactate synthase 3 regulatory subunit YP_005250687.1 137564 D 990282 CDS YP_005250688.1 378987524 138339..139343 1 NC_016863.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 139343 fruR 990282000120 fruR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator FruR YP_005250688.1 138339 D 990282 CDS YP_005250689.1 378987525 139949..140407 1 NC_016863.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 140407 yabB 990282000121 yabB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division protein MraZ YP_005250689.1 139949 D 990282 CDS YP_005250690.1 378987526 140409..141350 1 NC_016863.1 similar to Escherichia coli putative apolipoprotein (AAC73193.1); S-adenosyl-methyltransferase MraW 141350 mraW 990282000122 mraW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 S-adenosyl-methyltransferase MraW YP_005250690.1 140409 D 990282 CDS YP_005250691.1 378987527 141347..141712 1 NC_016863.1 membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 141712 ftsL 990282000123 ftsL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division protein FtsL YP_005250691.1 141347 D 990282 CDS YP_005250692.1 378987528 141728..143494 1 NC_016863.1 similar to Escherichia coli septum formation; penicillin-binding protein 3; peptidoglycan synthetase (AAC73195.1); division specific transpeptidase 143494 ftsI 990282000124 ftsI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 division specific transpeptidase YP_005250692.1 141728 D 990282 CDS YP_005250693.1 378987529 143481..144968 1 NC_016863.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 144968 murE 990282000125 murE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_005250693.1 143481 D 990282 CDS YP_005250694.1 378987530 144965..146323 1 NC_016863.1 similar to Escherichia coli D-alanine-D-alanine-adding enzyme (AAC73197.1); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 146323 murF 990282000126 murF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_005250694.1 144965 D 990282 CDS YP_005250695.1 378987531 146317..147399 1 NC_016863.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 147399 mraY 990282000127 mraY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_005250695.1 146317 D 990282 CDS YP_005250696.1 378987532 147402..148718 1 NC_016863.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 148718 murD 990282000128 murD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_005250696.1 147402 D 990282 CDS YP_005250697.1 378987533 148718..149962 1 NC_016863.1 integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 149962 ftsW 990282000129 ftsW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division protein FtsW YP_005250697.1 148718 D 990282 CDS YP_005250698.1 378987534 149959..151026 1 NC_016863.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 151026 murG 990282000130 murG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_005250698.1 149959 D 990282 CDS YP_005250699.1 378987535 151145..152620 1 NC_016863.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 152620 murC 990282000131 murC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-N-acetylmuramate--L-alanine ligase YP_005250699.1 151145 D 990282 CDS YP_005250700.1 378987536 152613..153533 1 NC_016863.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 153533 ddl 990282000132 ddl Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-alanyl-alanine synthetase A YP_005250700.1 152613 D 990282 CDS YP_005250701.1 378987537 153535..154365 1 NC_016863.1 involved in septum formation; cell division protein FtsQ 154365 ftsQ 990282000133 ftsQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division protein FtsQ YP_005250701.1 153535 D 990282 CDS YP_005250702.1 378987538 154362..155624 1 NC_016863.1 ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 155624 ftsA 990282000134 ftsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division protein FtsA YP_005250702.1 154362 D 990282 CDS YP_005250703.1 378987539 155685..156836 1 NC_016863.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 156836 ftsZ 990282000135 ftsZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division protein FtsZ YP_005250703.1 155685 D 990282 CDS YP_005250704.1 378987540 156937..157854 1 NC_016863.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 157854 lpxC 990282000136 lpxC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_005250704.1 156937 D 990282 CDS YP_005250705.1 378987541 158202..158630 1 NC_016863.1 secM translational pause allows for the initiation of secA translation; SecA regulator SecM 158630 yacA 990282000137 yacA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 SecA regulator SecM YP_005250705.1 158202 D 990282 CDS YP_005250706.1 378987542 158692..161397 1 NC_016863.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis ap; preprotein translocase subunit SecA 161397 secA 990282000138 secA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 preprotein translocase subunit SecA YP_005250706.1 158692 D 990282 CDS YP_005250707.1 378987543 161549..161944 1 NC_016863.1 similar to Escherichia coli 7,8-dihydro-8-oxoguanine-triphosphatase; prefers dGTP; causes AT-GC transversions (AAC73210.1); nucleoside triphosphate pyrophosphohydrolase 161944 mutT 990282000139 mutT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nucleoside triphosphate pyrophosphohydrolase YP_005250707.1 161549 D 990282 CDS YP_005250708.1 378987544 complement(162266..162457) 1 NC_016863.1 zinc-binding protein 162457 yacG 990282000140 yacG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 zinc-binding protein YP_005250708.1 162266 R 990282 CDS YP_005250709.1 378987545 complement(162467..163210) 1 NC_016863.1 hypothetical protein 163210 yacF 990282000141 yacF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250709.1 162467 R 990282 CDS YP_005250710.1 378987546 complement(163210..163830) 1 NC_016863.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 163830 coaE 990282000142 coaE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dephospho-CoA kinase YP_005250710.1 163210 R 990282 CDS YP_005250711.1 378987547 164056..165099 1 NC_016863.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 165099 guaC 990282000143 guaC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 guanosine 5'-monophosphate oxidoreductase YP_005250711.1 164056 D 990282 CDS YP_005250712.1 378987548 complement(165130..166332) 1 NC_016863.1 similar to Escherichia coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73217.1); type IV pilin biogenesis protein 166332 hofC 990282000144 hofC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type IV pilin biogenesis protein YP_005250712.1 165130 R 990282 CDS YP_005250713.1 378987549 complement(166322..167707) 1 NC_016863.1 similar to Escherichia coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73218.1); hypothetical protein 167707 hofB 990282000145 hofB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250713.1 166322 R 990282 CDS YP_005250714.1 378987550 complement(167717..168154) 1 NC_016863.1 similar to Escherichia coli prepilin peptidase dependent protein (AAC73219.1); putative major pilin subunit 168154 ppdD 990282000146 ppdD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative major pilin subunit YP_005250714.1 167717 R 990282 CDS YP_005250715.1 378987551 complement(168376..169269) 1 NC_016863.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; quinolinate phosphoribosyltransferase 169269 nadC 990282000147 nadC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 quinolinate phosphoribosyltransferase YP_005250715.1 168376 R 990282 CDS YP_005250716.1 378987552 169357..169920 1 NC_016863.1 AMPD protein (SW:AMPD_SALTY); N-acetyl-anhydromuranmyl-L-alanine amidase 169920 ampD 990282000148 ampD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-acetyl-anhydromuranmyl-L-alanine amidase YP_005250716.1 169357 D 990282 CDS YP_005250717.1 378987553 169917..170771 1 NC_016863.1 involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 170771 ampE 990282000149 ampE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 regulatory protein AmpE YP_005250717.1 169917 D 990282 CDS YP_005250718.1 378987554 complement(170863..171813) 1 NC_016863.1 putative cytoplasmic protein 171813 990282000150 STMUK_0150 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250718.1 170863 R 990282 CDS YP_005250719.1 378987555 complement(171813..173219) 1 NC_016863.1 Na+/galactoside symporter 173219 990282000151 STMUK_0151 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Na+/galactoside symporter YP_005250719.1 171813 R 990282 CDS YP_005250720.1 378987556 complement(173383..174756) 1 NC_016863.1 similar to Escherichia coli aromatic amino acid transport protein (AAC73223.1); APC family; aromatic amino acid transporter 174756 aroP 990282000152 aroP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aromatic amino acid transporter YP_005250720.1 173383 R 990282 CDS YP_005250721.1 378987557 175319..176083 1 NC_016863.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 176083 pdhR 990282000153 pdhR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator PdhR YP_005250721.1 175319 D 990282 CDS YP_005250722.1 378987558 176243..178906 1 NC_016863.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 178906 aceE 990282000154 aceE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyruvate dehydrogenase subunit E1 YP_005250722.1 176243 D 990282 CDS YP_005250723.1 378987559 178921..180810 1 NC_016863.1 E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 180810 aceF 990282000155 aceF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dihydrolipoamide acetyltransferase YP_005250723.1 178921 D 990282 CDS YP_005250724.1 378987560 181010..182434 1 NC_016863.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 182434 lpdA 990282000156 lpdA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dihydrolipoamide dehydrogenase YP_005250724.1 181010 D 990282 CDS YP_005250725.1 378987561 182723..183007 1 NC_016863.1 putative outer membrane protein 183007 990282000157 STMUK_0157 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005250725.1 182723 D 990282 CDS YP_005250726.1 378987562 complement(183045..183836) 1 NC_016863.1 hypothetical protein 183836 990282000158 STMUK_0158 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250726.1 183045 R 990282 CDS YP_005250727.1 378987563 185852..188449 1 NC_016863.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 188449 acnB 990282000160 acnB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_005250727.1 185852 D 990282 CDS YP_005250728.1 378987564 complement(188510..189352) 1 NC_016863.1 putative restriction endonuclease 189352 990282000161 STMUK_0161 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative restriction endonuclease YP_005250728.1 188510 R 990282 CDS YP_005250729.1 378987565 189598..189960 1 NC_016863.1 hypothetical protein 189960 yacL 990282000162 yacL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250729.1 189598 D 990282 CDS YP_005250730.1 378987566 190195..191148 1 NC_016863.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 191148 kdgT 990282000163 kdgT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-keto-3-deoxygluconate permease YP_005250730.1 190195 D 990282 CDS YP_005250731.1 378987567 191145..192416 1 NC_016863.1 putative inner membrane protein 192416 990282000164 STMUK_0164 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005250731.1 191145 D 990282 CDS YP_005250732.1 378987568 192406..193389 1 NC_016863.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 193389 pdxA 990282000165 pdxA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxythreonine-4-phosphate dehydrogenase YP_005250732.1 192406 D 990282 CDS YP_005250733.1 378987569 193399..194166 1 NC_016863.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC75777.1); LysR family; putative transcriptional regulator 194166 990282000166 STMUK_0166 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005250733.1 193399 D 990282 CDS YP_005250734.1 378987570 complement(194196..194990) 1 NC_016863.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 194990 speD 990282000167 speD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 S-adenosylmethionine decarboxylase YP_005250734.1 194196 R 990282 CDS YP_005250735.1 378987571 complement(195011..195871) 1 NC_016863.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 195871 speE 990282000168 speE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 spermidine synthase YP_005250735.1 195011 R 990282 CDS YP_005250736.1 378987572 complement(195978..196325) 1 NC_016863.1 hypothetical protein 196325 yacC 990282000169 yacC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250736.1 195978 R 990282 CDS YP_005250737.1 378987573 196527..198137 1 NC_016863.1 laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase 198137 cueO 990282000170 cueO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multicopper oxidase YP_005250737.1 196527 D 990282 CDS YP_005250738.1 378987574 complement(198215..200605) 1 NC_016863.1 similar to Escherichia coli glucose dehydrogenase (AAC73235.1); glucose dehydrogenase 200605 gcd 990282000171 gcd Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucose dehydrogenase YP_005250738.1 198215 R 990282 CDS YP_005250739.1 378987575 200811..201347 1 NC_016863.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 201347 hpt 990282000172 hpt Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypoxanthine-guanine phosphoribosyltransferase YP_005250739.1 200811 D 990282 CDS YP_005250740.1 378987576 complement(201405..202067) 1 NC_016863.1 catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase 202067 yadF 990282000173 yadF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 carbonic anhydrase YP_005250740.1 201405 R 990282 CDS YP_005250741.1 378987577 202176..203102 1 NC_016863.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC73238.1); putative ABC-type multidrug transport system ATPase component 203102 yadG 990282000174 yadG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type multidrug transport system ATPase component YP_005250741.1 202176 D 990282 CDS YP_005250742.1 378987578 203099..203869 1 NC_016863.1 putative ABC superfamily membrane protein; putative transport protein 203869 yadH 990282000175 yadH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005250742.1 203099 D 990282 CDS YP_005250743.1 378987579 complement(203986..205065) 1 NC_016863.1 LpfD protein precursor (SW:LPFD_SALTY); putative fimbrial protein precurosr 205065 stiH 990282000176 stiH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial protein precurosr YP_005250743.1 203986 R 990282 CDS YP_005250744.1 378987580 complement(205074..207620) 1 NC_016863.1 similar to Escherichia coli putative outer membrane protein (AAC76178.1); fimbrial usher protein 207620 stiC 990282000177 stiC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fimbrial usher protein YP_005250744.1 205074 R 990282 CDS YP_005250745.1 378987581 complement(207647..208330) 1 NC_016863.1 similar to Escherichia coli periplasmic chaperone, required for type 1 fimbriae (AAC77272.1); putative fimbrial chaperone 208330 stiB 990282000178 stiB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial chaperone YP_005250745.1 207647 R 990282 CDS YP_005250746.1 378987582 complement(208378..208917) 1 NC_016863.1 similar to Escherichia coli major type 1 subunit fimbrin; pilin (AAC77270.1); putative fimbrial subunit 208917 stiA 990282000179 stiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial subunit YP_005250746.1 208378 R 990282 CDS YP_005250747.1 378987583 209287..209727 1 NC_016863.1 similar to Escherichia coli putative PTS enzyme II B component (AAC73240.1); putative PTS enzyme 209727 yadI 990282000180 yadI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative PTS enzyme YP_005250747.1 209287 D 990282 CDS YP_005250748.1 378987584 209789..211018 1 NC_016863.1 putative xylanase/chitin deacetylase 211018 yadE 990282000181 yadE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative xylanase/chitin deacetylase YP_005250748.1 209789 D 990282 CDS YP_005250749.1 378987585 complement(211025..211405) 1 NC_016863.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 211405 panD 990282000182 panD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aspartate alpha-decarboxylase YP_005250749.1 211025 R 990282 CDS YP_005250750.1 378987586 complement(211500..212354) 1 NC_016863.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 212354 panC 990282000183 panC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pantoate--beta-alanine ligase YP_005250750.1 211500 R 990282 CDS YP_005250751.1 378987587 complement(212480..213271) 1 NC_016863.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 213271 panB 990282000184 panB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_005250751.1 212480 R 990282 CDS YP_005250752.1 378987588 complement(213392..213871) 1 NC_016863.1 catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 213871 folK 990282000185 folK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_005250752.1 213392 R 990282 CDS YP_005250753.1 378987589 complement(213868..215286) 1 NC_016863.1 Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase I 215286 pcnB 990282000186 pcnB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 poly(A) polymerase I YP_005250753.1 213868 R 990282 CDS YP_005250754.1 378987590 complement(215427..216368) 1 NC_016863.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the; glutamyl-Q tRNA(Asp) synthetase 216368 yadB 990282000187 yadB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamyl-Q tRNA(Asp) synthetase YP_005250754.1 215427 R 990282 CDS YP_005250755.1 378987591 complement(216392..216847) 1 NC_016863.1 dnaK suppressor protein (SW:DKSA_SALTY); suppresses dnaK deletion; RNA polymerase-binding transcription factor 216847 dksA 990282000188 dksA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 RNA polymerase-binding transcription factor YP_005250755.1 216392 R 990282 CDS YP_005250756.1 378987592 complement(217024..217728) 1 NC_016863.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 217728 sfsA 990282000189 sfsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sugar fermentation stimulation protein A YP_005250756.1 217024 R 990282 CDS YP_005250757.1 378987593 complement(217745..218275) 1 NC_016863.1 2'-5' RNA ligase 218275 ligT 990282000190 ligT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2'-5' RNA ligase YP_005250757.1 217745 R 990282 CDS YP_005250758.1 378987594 218303..220777 1 NC_016863.1 similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 220777 hrpB 990282000191 hrpB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent RNA helicase HrpB YP_005250758.1 218303 D 990282 CDS YP_005250759.1 378987595 220918..223440 1 NC_016863.1 bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while; penicillin-binding protein 1b 223440 ponB 990282000192 ponB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 penicillin-binding protein 1b YP_005250759.1 220918 D 990282 CDS YP_005250760.1 378987596 223733..225922 1 NC_016863.1 involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; ferrichrome outer membrane transporter 225922 fhuA 990282000193 fhuA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ferrichrome outer membrane transporter YP_005250760.1 223733 D 990282 CDS YP_005250761.1 378987597 225971..226768 1 NC_016863.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron-hydroxamate transporter ATP-binding subunit 226768 fhuC 990282000194 fhuC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 iron-hydroxamate transporter ATP-binding subunit YP_005250761.1 225971 D 990282 CDS YP_005250762.1 378987598 226768..227658 1 NC_016863.1 Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron-hydroxamate transporter substrate-binding subunit 227658 fhuD 990282000195 fhuD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 iron-hydroxamate transporter substrate-binding subunit YP_005250762.1 226768 D 990282 CDS YP_005250763.1 378987599 227655..229712 1 NC_016863.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 229712 fhuB 990282000196 fhuB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 iron-hydroxamate transporter permease subunit YP_005250763.1 227655 D 990282 CDS YP_005250764.1 378987600 230651..231211 1 NC_016863.1 major fimbrial subunit StfA (gi|3747029); putative fimbrial subunit 231211 stfA 990282000197 stfA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial subunit YP_005250764.1 230651 D 990282 CDS YP_005250765.1 378987601 231297..233954 1 NC_016863.1 outer membrane usher protein StfC (gi|3747030); putative fimbrial outer membrane usher 233954 stfC 990282000198 stfC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial outer membrane usher YP_005250765.1 231297 D 990282 CDS YP_005250766.1 378987602 233972..234724 1 NC_016863.1 periplasmic fimbrial chaperone StfD (gi|3747031); putative periplasmic fimbrial chaperone 234724 stfD 990282000199 stfD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative periplasmic fimbrial chaperone YP_005250766.1 233972 D 990282 CDS YP_005250767.1 378987603 234743..235255 1 NC_016863.1 minor fimbrial subunit StfE (gi|3747032); putative minor fimbrial subunit 235255 stfE 990282000200 stfE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative minor fimbrial subunit YP_005250767.1 234743 D 990282 CDS YP_005250768.1 378987604 235252..235728 1 NC_016863.1 minor fimbrial subunit StfF (gi|3747033); putative minor fimbrial subunit 235728 stfF 990282000201 stfF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative minor fimbrial subunit YP_005250768.1 235252 D 990282 CDS YP_005250769.1 378987605 235728..236258 1 NC_016863.1 minor fimbrial subunit StfG (gi|3747034); putative adhesin; putative minor fimbrial subunit 236258 stfG 990282000202 stfG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative minor fimbrial subunit YP_005250769.1 235728 D 990282 CDS YP_005250770.1 378987606 236258..237097 1 NC_016863.1 hypothetical 30.2 da protein in stfG 3'region precursor (SW:YADU_SALTY); putative outer membrane protein 237097 990282000203 STMUK_0203 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005250770.1 236258 D 990282 CDS YP_005250771.1 378987607 complement(237204..238484) 1 NC_016863.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 238484 hemL 990282000204 hemL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamate-1-semialdehyde aminotransferase YP_005250771.1 237204 R 990282 CDS YP_005250772.1 378987608 238654..240075 1 NC_016863.1 Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 240075 yadQ 990282000205 yadQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chloride channel protein YP_005250772.1 238654 D 990282 CDS YP_005250773.1 378987609 240112..240501 1 NC_016863.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 240501 yadR 990282000206 yadR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 iron-sulfur cluster insertion protein ErpA YP_005250773.1 240112 D 990282 CDS YP_005250774.1 378987610 complement(240602..241225) 1 NC_016863.1 hypothetical protein 241225 yadS 990282000207 yadS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250774.1 240602 R 990282 CDS YP_005250775.1 378987611 complement(241262..242062) 1 NC_016863.1 solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF 242062 btuF 990282000208 btuF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 vitamin B12-transporter protein BtuF YP_005250775.1 241262 R 990282 CDS YP_005250776.1 378987612 complement(242055..242753) 1 NC_016863.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 242753 pfs 990282000209 pfs Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_005250776.1 242055 R 990282 CDS YP_005250777.1 378987613 242838..244355 1 NC_016863.1 forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 244355 dgt 990282000210 dgt Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 deoxyguanosinetriphosphate triphosphohydrolase YP_005250777.1 242838 D 990282 CDS YP_005250778.1 378987614 244485..245912 1 NC_016863.1 protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 245912 htrA 990282000211 htrA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 serine endoprotease YP_005250778.1 244485 D 990282 CDS YP_005250779.1 378987615 246065..247222 1 NC_016863.1 regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; carbohydrate diacid transcriptional activator CdaR 247222 cdaR 990282000212 cdaR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 carbohydrate diacid transcriptional activator CdaR YP_005250779.1 246065 D 990282 CDS YP_005250780.1 378987616 complement(247311..247697) 1 NC_016863.1 similar to Escherichia coli putative structural protein (AAC73274.1); hypothetical protein 247697 yaeH 990282000213 yaeH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250780.1 247311 R 990282 CDS YP_005250781.1 378987617 247944..249245 1 NC_016863.1 similar to Escherichia coli putative transport protein; shikimate (AAC75045.1); putative inner membrane protein 249245 990282000214 STMUK_0214 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005250781.1 247944 D 990282 CDS YP_005250782.1 378987618 complement(249282..250106) 1 NC_016863.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 250106 dapD 990282000215 dapD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_005250782.1 249282 R 990282 CDS YP_005250783.1 378987619 complement(250136..252808) 1 NC_016863.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 252808 glnD 990282000216 glnD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PII uridylyl-transferase YP_005250783.1 250136 R 990282 CDS YP_005250784.1 378987620 complement(253045..253839) 1 NC_016863.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 253839 map 990282000217 map Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 methionine aminopeptidase YP_005250784.1 253045 R 990282 CDS YP_005250785.1 378987621 254290..255015 1 NC_016863.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 255015 rpsB 990282000218 rpsB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S2 YP_005250785.1 254290 D 990282 CDS YP_005250786.1 378987622 255273..256124 1 NC_016863.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 256124 tsf 990282000219 tsf Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 elongation factor Ts YP_005250786.1 255273 D 990282 CDS YP_005250787.1 378987623 256269..256994 1 NC_016863.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 256994 pyrH 990282000220 pyrH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 uridylate kinase YP_005250787.1 256269 D 990282 CDS YP_005250788.1 378987624 257141..257698 1 NC_016863.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release fact; ribosome recycling factor 257698 frr 990282000221 frr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribosome recycling factor YP_005250788.1 257141 D 990282 CDS YP_005250789.1 378987625 257839..259035 1 NC_016863.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 259035 dxr 990282000222 dxr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_005250789.1 257839 D 990282 CDS YP_005250790.1 378987626 259348..260106 1 NC_016863.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 260106 uppS 990282000223 uppS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 undecaprenyl pyrophosphate synthase YP_005250790.1 259348 D 990282 CDS YP_005250791.1 378987627 260119..260976 1 NC_016863.1 catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 260976 cdsA 990282000224 cdsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 CDP-diglyceride synthase YP_005250791.1 260119 D 990282 CDS YP_005250792.1 378987628 260988..262340 1 NC_016863.1 catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 262340 yaeL 990282000225 yaeL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 zinc metallopeptidase RseP YP_005250792.1 260988 D 990282 CDS YP_005250793.1 378987629 262372..264786 1 NC_016863.1 part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT 264786 yaeT 990282000226 yaeT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane protein assembly factor YaeT YP_005250793.1 262372 D 990282 CDS YP_005250794.1 378987630 264909..265394 1 NC_016863.1 (SW:OMPH_SALTY); histone-like protein; periplasmic chaperone 265394 hlpA 990282000227 hlpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 periplasmic chaperone YP_005250794.1 264909 D 990282 CDS YP_005250795.1 378987631 265398..266423 1 NC_016863.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 266423 lpxD 990282000228 lpxD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_005250795.1 265398 D 990282 CDS YP_005250796.1 378987632 266529..266984 1 NC_016863.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 266984 fabZ 990282000229 fabZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 (3R)-hydroxymyristoyl-ACP dehydratase YP_005250796.1 266529 D 990282 CDS YP_005250797.1 378987633 266988..267776 1 NC_016863.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 267776 lpxA 990282000230 lpxA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-N-acetylglucosamine acyltransferase YP_005250797.1 266988 D 990282 CDS YP_005250798.1 378987634 267776..268924 1 NC_016863.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 268924 lpxB 990282000231 lpxB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipid-A-disaccharide synthase YP_005250798.1 267776 D 990282 CDS YP_005250799.1 378987635 268921..269517 1 NC_016863.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 269517 rnhB 990282000232 rnhB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonuclease HII YP_005250799.1 268921 D 990282 CDS YP_005250800.1 378987636 269541..273023 1 NC_016863.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 273023 dnaE 990282000233 dnaE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase III subunit alpha YP_005250800.1 269541 D 990282 CDS YP_005250801.1 378987637 273036..273995 1 NC_016863.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 273995 accA 990282000234 accA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_005250801.1 273036 D 990282 CDS YP_005250802.1 378987638 274175..275938 1 NC_016863.1 putative endochitinase 275938 990282000235 STMUK_0235 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative endochitinase YP_005250802.1 274175 D 990282 CDS YP_005250803.1 378987639 276014..278155 1 NC_016863.1 similar to Escherichia coli lysine decarboxylase 2; constitutive (AAC73297.1); lysine decarboxylase 2 278155 ldcC 990282000236 ldcC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lysine decarboxylase 2 YP_005250803.1 276014 D 990282 CDS YP_005250804.1 378987640 278211..278600 1 NC_016863.1 hypothetical protein 278600 yaeR 990282000237 yaeR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250804.1 278211 D 990282 CDS YP_005250805.1 378987641 278663..279955 1 NC_016863.1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition; tRNA(Ile)-lysidine synthetase 279955 tilS 990282000238 tilS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA(Ile)-lysidine synthetase YP_005250805.1 278663 D 990282 CDS YP_005250806.1 378987642 complement(280039..280299) 1 NC_016863.1 Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Rho-binding antiterminator 280299 rof 990282000239 rof Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Rho-binding antiterminator YP_005250806.1 280039 R 990282 CDS YP_005250807.1 378987643 complement(280286..280504) 1 NC_016863.1 hypothetical protein 280504 yaeP 990282000240 yaeP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250807.1 280286 R 990282 CDS YP_005250808.1 378987644 280684..281229 1 NC_016863.1 hypothetical 20.8 kDa protein in mesJ-cutF intergenic region (SW:YAEQ_SALTY); putative cytoplasmic protein 281229 yaeQ 990282000241 yaeQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250808.1 280684 D 990282 CDS YP_005250809.1 378987645 281226..281648 1 NC_016863.1 putative-tRNA hydrolase domain; peptidyl-tRNA hydrolase domain-containing protein 281648 yaeJ 990282000242 yaeJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptidyl-tRNA hydrolase domain-containing protein YP_005250809.1 281226 D 990282 CDS YP_005250810.1 378987646 281680..282381 1 NC_016863.1 similar to copper homeostasis protein CutF (Pid: YP_002039481.1).; hypothetical protein 282381 990282000243 STMUK_0243 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250810.1 281680 D 990282 CDS YP_005250811.1 378987647 complement(282455..284173) 1 NC_016863.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 284173 proS 990282000244 proS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 prolyl-tRNA synthetase YP_005250811.1 282455 R 990282 CDS YP_005250812.1 378987648 complement(284284..284991) 1 NC_016863.1 putative regulatory protein 284991 yaeB 990282000245 yaeB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005250812.1 284284 R 990282 CDS YP_005250813.1 378987649 complement(284988..285392) 1 NC_016863.1 similar to Escherichia coli regulator in colanic acid synthesis; interacts with RcsB (AAC73307.1); overexpression confers mucoid phenotype, increases capsule synthesis; outer membrane lipoprotein 285392 rcsF 990282000246 rcsF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane lipoprotein YP_005250813.1 284988 R 990282 CDS YP_005250814.1 378987650 complement(285511..286326) 1 NC_016863.1 similar to Escherichia coli putative lipoprotein (AAC73308.1); DL-methionine transporter substrate-binding subunit 286326 metQ 990282000247 metQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DL-methionine transporter substrate-binding subunit YP_005250814.1 285511 R 990282 CDS YP_005250815.1 378987651 complement(286365..287018) 1 NC_016863.1 part of the MetNIQ methionine uptake system; DL-methionine transporter permease 287018 yaeE 990282000248 yaeE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DL-methionine transporter permease YP_005250815.1 286365 R 990282 CDS YP_005250816.1 378987652 complement(287011..288042) 1 NC_016863.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 288042 metN 990282000249 metN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DL-methionine transporter ATP-binding subunit YP_005250816.1 287011 R 990282 CDS YP_005250817.1 378987653 288232..288798 1 NC_016863.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 288798 yaeD 990282000250 yaeD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D,D-heptose 1,7-bisphosphate phosphatase YP_005250817.1 288232 D 990282 CDS YP_005250818.1 378987654 295057..295860 1 NC_016863.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 295860 dkgB 990282000257 dkgB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2,5-diketo-D-gluconate reductase B YP_005250818.1 295057 D 990282 CDS YP_005250819.1 378987655 complement(295881..296795) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73313.1); LysR family; putative transcriptional regulator 296795 yafC 990282000258 yafC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005250819.1 295881 R 990282 CDS YP_005250820.1 378987656 296900..298075 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC74729.1); putatively for chloramphenicol; putative drug efflux protein 298075 990282000259 STMUK_0259 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative drug efflux protein YP_005250820.1 296900 D 990282 CDS YP_005250821.1 378987657 298228..299007 1 NC_016863.1 hypothetical protein 299007 yafD 990282000260 yafD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250821.1 298228 D 990282 CDS YP_005250822.1 378987658 299085..299855 1 NC_016863.1 similar to Escherichia coli putative biotin synthesis protein (AAC73315.1); involved in menaquinone/biotin biosynthesis; putative methyltransferase 299855 yafE 990282000261 yafE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative methyltransferase YP_005250822.1 299085 D 990282 CDS YP_005250823.1 378987659 complement(299911..301278) 1 NC_016863.1 catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transgl; membrane-bound lytic murein transglycosylase D 301278 mltD 990282000262 mltD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 membrane-bound lytic murein transglycosylase D YP_005250823.1 299911 R 990282 CDS YP_005250824.1 378987660 complement(301350..302105) 1 NC_016863.1 catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase 302105 gloB 990282000263 gloB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydroxyacylglutathione hydrolase YP_005250824.1 301350 R 990282 CDS YP_005250825.1 378987661 302140..302862 1 NC_016863.1 putative SAM-dependent methyltransferase 302862 yafS 990282000264 yafS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative SAM-dependent methyltransferase YP_005250825.1 302140 D 990282 CDS YP_005250826.1 378987662 complement(302859..303326) 1 NC_016863.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 303326 rnhA 990282000265 rnhA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonuclease H YP_005250826.1 302859 R 990282 CDS YP_005250827.1 378987663 303390..304121 1 NC_016863.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 304121 dnaQ 990282000266 dnaQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase III subunit epsilon YP_005250827.1 303390 D 990282 CDS YP_005250828.1 378987664 complement(304654..305709) 1 NC_016863.1 putative cytoplasmic protein 305709 990282000268 STMUK_0268 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250828.1 304654 R 990282 CDS YP_005250829.1 378987665 complement(305720..306715) 1 NC_016863.1 putative cytoplasmic protein 306715 990282000269 STMUK_0269 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250829.1 305720 R 990282 CDS YP_005250830.1 378987666 complement(306712..308595) 1 NC_016863.1 putative cytoplasmic protein 308595 990282000270 STMUK_0270 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250830.1 306712 R 990282 CDS YP_005250831.1 378987667 complement(308611..309105) 1 NC_016863.1 putative cytoplasmic protein 309105 990282000271 STMUK_0271 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250831.1 308611 R 990282 CDS YP_005250832.1 378987668 complement(309102..309926) 1 NC_016863.1 putative cytoplasmic protein 309926 990282000272 STMUK_0272 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250832.1 309102 R 990282 CDS YP_005250833.1 378987669 complement(309913..310815) 1 NC_016863.1 putative cytoplasmic protein 310815 990282000273 STMUK_0273 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250833.1 309913 R 990282 CDS YP_005250834.1 378987670 311183..313822 1 NC_016863.1 similar to Escherichia coli ATP-binding component of serine protease (AAC73969.1); similar to Yersinia clpB; putative chaperone ATPase 313822 990282000274 STMUK_0274 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative chaperone ATPase YP_005250834.1 311183 D 990282 CDS YP_005250835.1 378987671 313922..314464 1 NC_016863.1 putative cytoplasmic protein 314464 990282000275 STMUK_0275 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250835.1 313922 D 990282 CDS YP_005250836.1 378987672 314488..315981 1 NC_016863.1 putative cytoplasmic protein 315981 990282000276 STMUK_0276 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250836.1 314488 D 990282 CDS YP_005250837.1 378987673 316044..316154 1 NC_016863.1 invasol SirA 316154 990282000277 STMUK_0277 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 invasol SirA YP_005250837.1 316044 D 990282 CDS YP_005250838.1 378987674 316281..316613 1 NC_016863.1 putative cytoplasmic protein 316613 990282000278 STMUK_0278 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250838.1 316281 D 990282 CDS YP_005250839.1 378987675 316867..317352 1 NC_016863.1 putative cytoplasmic protein 317352 990282000279 STMUK_0279 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250839.1 316867 D 990282 CDS YP_005250840.1 378987676 317657..318142 1 NC_016863.1 putative cytoplasmic protein 318142 990282000280 STMUK_0280 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250840.1 317657 D 990282 CDS YP_005250841.1 378987677 318127..318510 1 NC_016863.1 hypothetical protein 318510 990282000281 STMUK_0281 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250841.1 318127 D 990282 CDS YP_005250842.1 378987678 318653..319138 1 NC_016863.1 putative cytoplasmic protein 319138 990282000282 STMUK_0282 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250842.1 318653 D 990282 CDS YP_005250843.1 378987679 319205..319741 1 NC_016863.1 putative outer membrane lipoprotein 319741 990282000283 STMUK_0283 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005250843.1 319205 D 990282 CDS YP_005250844.1 378987680 319745..321088 1 NC_016863.1 putative cytoplasmic protein 321088 990282000284 STMUK_0284 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250844.1 319745 D 990282 CDS YP_005250845.1 378987681 321085..322389 1 NC_016863.1 similar to Escherichia coli putative outer membrane protein (AAC76576.1); OmpA family; hypothetical protein 322389 990282000285 STMUK_0285 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250845.1 321085 D 990282 CDS YP_005250846.1 378987682 322394..323167 1 NC_016863.1 putative inner membrane protein 323167 990282000286 STMUK_0286 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005250846.1 322394 D 990282 CDS YP_005250847.1 378987683 323370..323801 1 NC_016863.1 putative Shiga-like toxin A subunit 323801 990282000287 STMUK_0287 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative Shiga-like toxin A subunit YP_005250847.1 323370 D 990282 CDS YP_005250848.1 378987684 323835..327704 1 NC_016863.1 putative inner membrane protein 327704 990282000288 STMUK_0288 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005250848.1 323835 D 990282 CDS YP_005250849.1 378987685 327704..328492 1 NC_016863.1 putative cytoplasmic protein 328492 990282000289 STMUK_0289 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250849.1 327704 D 990282 CDS YP_005250850.1 378987686 328489..328905 1 NC_016863.1 hypothetical protein 328905 990282000290 STMUK_0290 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250850.1 328489 D 990282 CDS YP_005250851.1 378987687 328929..329450 1 NC_016863.1 putative cytoplasmic protein 329450 990282000291 STMUK_0291 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250851.1 328929 D 990282 CDS YP_005250852.1 378987688 329847..332036 1 NC_016863.1 putative cytoplasmic protein 332036 990282000292 STMUK_0292 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250852.1 329847 D 990282 CDS YP_005250853.1 378987689 332060..332506 1 NC_016863.1 putative cytoplasmic protein 332506 990282000293 STMUK_0293 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250853.1 332060 D 990282 CDS YP_005250854.1 378987690 332525..336619 1 NC_016863.1 similar to Escherichia coli RhsD protein in rhs element (AAC73599.1); similar to STM0292; putative RHS-like protein 336619 990282000294 STMUK_0294 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative RHS-like protein YP_005250854.1 332525 D 990282 CDS YP_005250855.1 378987691 336613..336876 1 NC_016863.1 similar to hypothetical protein plu3111 (Pid: NP_930343.1).; hypothetical protein 336876 990282000295 STMUK_0295 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250855.1 336613 D 990282 CDS YP_005250856.1 378987692 337069..337809 1 NC_016863.1 similar to Escherichia coli rhsE protein in rhs element (AAC74538.1); similar to C-terminus of STM0291; putative RHS-like protein 337809 990282000296 STMUK_0296 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative RHS-like protein YP_005250856.1 337069 D 990282 CDS YP_005250857.1 378987693 337803..338249 1 NC_016863.1 putative cytoplasmic protein 338249 990282000297 STMUK_0297 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250857.1 337803 D 990282 CDS YP_005250858.1 378987694 338634..338774 1 NC_016863.1 similar to hypothetical protein SNSL254_A0323 (Pid: YP_002039530.1).; hypothetical protein 338774 990282000298 STMUK_0298 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250858.1 338634 D 990282 CDS YP_005250859.1 378987695 338812..339249 1 NC_016863.1 putative cytoplasmic protein 339249 990282000299 STMUK_0299 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250859.1 338812 D 990282 CDS YP_005250860.1 378987696 complement(339302..339577) 1 NC_016863.1 similar to hypothetical protein STM0294.1N (Pid: NP_945154.1).; hypothetical protein 339577 990282000300 STMUK_0300 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250860.1 339302 R 990282 CDS YP_005250861.1 378987697 340018..340326 1 NC_016863.1 putative cytoplasmic protein 340326 990282000301 STMUK_0301 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250861.1 340018 D 990282 CDS YP_005250862.1 378987698 complement(340428..340676) 1 NC_016863.1 putative cytoplasmic protein 340676 990282000302 STMUK_0302 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250862.1 340428 R 990282 CDS YP_005250863.1 378987699 340729..340926 1 NC_016863.1 putative transposase 340926 990282000303 STMUK_0303 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transposase YP_005250863.1 340729 D 990282 CDS YP_005250864.1 378987700 341152..341433 1 NC_016863.1 similar to E. coli orf, hypothetical protein(AAC73370.1); Blastp hit to AAC73370.1 (384 aa); putative integrase core domain protein 341433 990282000304 STMUK_0304 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative integrase core domain protein YP_005250864.1 341152 D 990282 CDS YP_005250865.1 378987701 342183..342695 1 NC_016863.1 putative outer membrane protein 342695 safA 990282000305 safA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005250865.1 342183 D 990282 CDS YP_005250866.1 378987702 342803..343516 1 NC_016863.1 similar to Escherichia coli putative chaperone (AAC76177.1); putative fimbrial assembly chaperone 343516 safB 990282000306 safB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial assembly chaperone YP_005250866.1 342803 D 990282 CDS YP_005250867.1 378987703 343540..346050 1 NC_016863.1 similar to Escherichia coli putative outer membrane protein; export function (AAC73634.1); putative fimbrial usher 346050 safC 990282000307 safC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial usher YP_005250867.1 343540 D 990282 CDS YP_005250868.1 378987704 346072..346542 1 NC_016863.1 putative fimbrial subunit 346542 safD 990282000308 safD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial subunit YP_005250868.1 346072 D 990282 CDS YP_005250869.1 378987705 346948..347769 1 NC_016863.1 putative xylanase/chitin deacetylase 347769 ybeJ 990282000309 ybeJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative xylanase/chitin deacetylase YP_005250869.1 346948 D 990282 CDS YP_005250870.1 378987706 348584..349531 1 NC_016863.1 SinR protein (SW:SINR_SALTY); transcriptional regulator 349531 sinR 990282000310 sinR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator YP_005250870.1 348584 D 990282 CDS YP_005250871.1 378987707 349648..349863 1 NC_016863.1 putative cytoplasmic protein 349863 990282000311 STMUK_0311 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250871.1 349648 D 990282 CDS YP_005250872.1 378987708 complement(349867..350586) 1 NC_016863.1 SapA-like protein 350586 990282000312 STMUK_0312 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 SapA-like protein YP_005250872.1 349867 R 990282 CDS YP_005250873.1 378987709 complement(350917..351324) 1 NC_016863.1 similar to Shigella VirG protein; VirG-like protein 351324 990282000313 STMUK_0313 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 VirG-like protein YP_005250873.1 350917 R 990282 CDS YP_005250874.1 378987710 complement(351695..352462) 1 NC_016863.1 similar to Escherichia coli putative amidase-type enzyme (AAC73323.1); hypothetical protein 352462 yafV 990282000314 yafV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250874.1 351695 R 990282 CDS YP_005250875.1 378987711 complement(352571..355015) 1 NC_016863.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 355015 fadE 990282000315 fadE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acyl-CoA dehydrogenase YP_005250875.1 352571 R 990282 CDS YP_005250876.1 378987712 355255..355833 1 NC_016863.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 355833 gmhA 990282000316 gmhA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoheptose isomerase YP_005250876.1 355255 D 990282 CDS YP_005250877.1 378987713 356046..356813 1 NC_016863.1 similar to Escherichia coli putative amidotransferase (AAC73327.1); putative glutamine amidotransferase 356813 yafJ 990282000317 yafJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glutamine amidotransferase YP_005250877.1 356046 D 990282 CDS YP_005250878.1 378987714 complement(356784..357524) 1 NC_016863.1 hypothetical protein 357524 yafK 990282000318 yafK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250878.1 356784 R 990282 CDS YP_005250879.1 378987715 357774..358829 1 NC_016863.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 358829 dinP 990282000319 dinP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase IV YP_005250879.1 357774 D 990282 CDS YP_005250882.1 378987718 360177..360791 1 NC_016863.1 similar to release factor 1 and 2; peptide chain release factor-like protein 360791 prfH 990282000321 prfH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptide chain release factor-like protein YP_005250882.1 360177 D 990282 CDS YP_005250883.1 378987719 complement(360947..362404) 1 NC_016863.1 similar to Escherichia coli aminoacyl-histidine dipeptidase; peptidase D (AAC73341.1); aminoacyl-histidine dipeptidase 362404 pepD 990282000322 pepD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aminoacyl-histidine dipeptidase YP_005250883.1 360947 R 990282 CDS YP_005250884.1 378987720 362653..363111 1 NC_016863.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 363111 gpt 990282000323 gpt Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 xanthine-guanine phosphoribosyltransferase YP_005250884.1 362653 D 990282 CDS YP_005250885.1 378987721 363200..364444 1 NC_016863.1 forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 364444 frsA 990282000324 frsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fermentation/respiration switch protein YP_005250885.1 363200 D 990282 CDS YP_005250886.1 378987722 364502..364903 1 NC_016863.1 involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 364903 crl 990282000325 crl Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator Crl YP_005250886.1 364502 D 990282 CDS YP_005250887.1 378987723 complement(364954..366006) 1 NC_016863.1 outer membrane pore protein E precursor (SW:PHOE_SALTY); outer membrane phosphoporin protein E 366006 phoE 990282000326 phoE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane phosphoporin protein E YP_005250887.1 364954 R 990282 CDS YP_005250888.1 378987724 366289..367392 1 NC_016863.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 367392 proB 990282000327 proB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 gamma-glutamyl kinase YP_005250888.1 366289 D 990282 CDS YP_005250889.1 378987725 367404..368654 1 NC_016863.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 368654 proA 990282000328 proA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 gamma-glutamyl phosphate reductase YP_005250889.1 367404 D 990282 CDS YP_005250890.1 378987726 369132..369353 1 NC_016863.1 putative inner membrane protein 369353 990282000330 STMUK_0331 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005250890.1 369132 D 990282 CDS YP_005250891.1 378987727 complement(369171..369971) 1 NC_016863.1 similar to Escherichia coli IS3 putative transposase (AAC75150.1); contains a premature stop codon; IS3 transposase 369971 990282000331 STMUK_0332 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 IS3 transposase YP_005250891.1 369171 R 990282 CDS YP_005250892.1 378987728 370713..371036 1 NC_016863.1 putative cytoplasmic protein 371036 990282000332 STMUK_0333 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250892.1 370713 D 990282 CDS YP_005250893.1 378987729 371377..372615 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC74668.1); putative permease 372615 990282000333 STMUK_0334 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005250893.1 371377 D 990282 CDS YP_005250894.1 378987730 372747..374168 1 NC_016863.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 374168 990282000334 STMUK_0335 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 isopropylmalate isomerase large subunit YP_005250894.1 372747 D 990282 CDS YP_005250895.1 378987731 374170..374796 1 NC_016863.1 similar to Escherichia coli 3-isopropylmalate isomerase subunit (AAC73182.1); dehydratase; subunit with LeuC; putative 3-isopropylmalate isomerase 374796 990282000335 STMUK_0336 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative 3-isopropylmalate isomerase YP_005250895.1 374170 D 990282 CDS YP_005250896.1 378987732 374811..375689 1 NC_016863.1 similar to Escherichia coli putative isomerase (AAC74264.1); FAA; putative fumarylacetoacetate hydrolase 375689 990282000336 STMUK_0337 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fumarylacetoacetate hydrolase YP_005250896.1 374811 D 990282 CDS YP_005250897.1 378987733 375689..376603 1 NC_016863.1 putative hydrolase/acyltransferase 376603 990282000337 STMUK_0338 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase/acyltransferase YP_005250897.1 375689 D 990282 CDS YP_005250898.1 378987734 376637..377602 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74869.1); LysR family; putative transcriptional regulator 377602 990282000338 STMUK_0339 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005250898.1 376637 D 990282 CDS YP_005250899.1 378987735 complement(377547..377819) 1 NC_016863.1 putative cytoplasmic protein 377819 990282000339 STMUK_0340 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250899.1 377547 R 990282 CDS YP_005250900.1 378987736 378510..378908 1 NC_016863.1 putative outer membrane protein 378908 990282000340 STMUK_0341 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005250900.1 378510 D 990282 CDS YP_005250901.1 378987737 complement(378955..379713) 1 NC_016863.1 similar to Escherichia coli periplasmic chaperone; required for type 1 fimbriae (AAC77272.1); putative fimbrial chaperone 379713 stbE 990282000341 stbE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial chaperone YP_005250901.1 378955 R 990282 CDS YP_005250902.1 378987738 complement(379679..381004) 1 NC_016863.1 putative fimbrial usher 381004 stbD 990282000342 stbD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial usher YP_005250902.1 379679 R 990282 CDS YP_005250903.1 378987739 complement(381009..383576) 1 NC_016863.1 similar to Escherichia coli outer membrane protein; export and assembly of type 1 fimbriae; interrupted (AAC77273.1); putative fimbrial usher 383576 stbC 990282000343 stbC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial usher YP_005250903.1 381009 R 990282 CDS YP_005250904.1 378987740 complement(383560..384321) 1 NC_016863.1 similar to Escherichia coli probable pilin chaperone PapD (AAC73251.1); putative fimbrial chaperone 384321 stbB 990282000344 stbB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial chaperone YP_005250904.1 383560 R 990282 CDS YP_005250905.1 378987741 complement(384383..384919) 1 NC_016863.1 similar to Escherichia coli major type 1 subunit fimbrin; pilin (AAC77270.1); putative fimbrial major subunit 384919 stbA 990282000345 stbA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial major subunit YP_005250905.1 384383 R 990282 CDS YP_005250906.1 378987742 385553..386317 1 NC_016863.1 putative inner membrane protein 386317 990282000346 STMUK_0347 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005250906.1 385553 D 990282 CDS YP_005250907.1 378987743 386290..386790 1 NC_016863.1 hypothetical protein 386790 990282000347 STMUK_0348 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250907.1 386290 D 990282 CDS YP_005250908.1 378987744 387090..388664 1 NC_016863.1 putative diguanylate cyclase/phosphodiesterase domain 1; hypothetical protein 388664 990282000348 STMUK_0349 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250908.1 387090 D 990282 CDS YP_005250909.1 378987745 388764..389507 1 NC_016863.1 putative response regulator 389507 990282000349 STMUK_0350 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative response regulator YP_005250909.1 388764 D 990282 CDS YP_005250910.1 378987746 389480..389968 1 NC_016863.1 putative inner membrane protein 389968 990282000350 STMUK_0351 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005250910.1 389480 D 990282 CDS YP_005250911.1 378987747 390370..390894 1 NC_016863.1 similar to ail and ompX; putative outer membrane protein 390894 990282000351 STMUK_0352 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005250911.1 390370 D 990282 CDS YP_005250912.1 378987748 391038..391679 1 NC_016863.1 putative response regulator 391679 990282000352 STMUK_0353 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative response regulator YP_005250912.1 391038 D 990282 CDS YP_005250913.1 378987749 391690..391914 1 NC_016863.1 putative inner membrane protein 391914 990282000353 STMUK_0354 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005250913.1 391690 D 990282 CDS YP_005250914.1 378987750 391972..392331 1 NC_016863.1 putative outer membrane lipoprotein 392331 990282000354 STMUK_0355 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005250914.1 391972 D 990282 CDS YP_005250915.1 378987751 complement(392401..393912) 1 NC_016863.1 similar to Escherichia coli putative resistance protein (AAC73673.1); outer membrane efflux-like protein 393912 990282000355 STMUK_0356 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane efflux-like protein YP_005250915.1 392401 R 990282 CDS YP_005250916.1 378987752 complement(393875..397042) 1 NC_016863.1 similar to Escherichia coli integral transmembrane protein; acridine resistance (AAC76298.1); putative cation efflux system protein 397042 990282000356 STMUK_0357 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cation efflux system protein YP_005250916.1 393875 R 990282 CDS YP_005250917.1 378987753 complement(397039..398265) 1 NC_016863.1 similar to Escherichia coli acridine efflux pump (AAC73565.1); putative cation efflux pump 398265 990282000357 STMUK_0358 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cation efflux pump YP_005250917.1 397039 R 990282 CDS YP_005250918.1 378987754 398542..400830 1 NC_016863.1 similar to Escherichia coli putative ATPase (AAC73586.1); putative cation transport ATPase 400830 990282000358 STMUK_0359 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cation transport ATPase YP_005250918.1 398542 D 990282 CDS YP_005250919.1 378987755 400842..401306 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator (AAC73589.1); putative transcriptional regulator 401306 990282000359 STMUK_0360 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005250919.1 400842 D 990282 CDS YP_005250920.1 378987756 401384..401578 1 NC_016863.1 putative copper chaperone 401578 990282000360 STMUK_0361 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative copper chaperone YP_005250920.1 401384 D 990282 CDS YP_005250921.1 378987757 401871..403124 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC77235.1); putative inner membrane protein 403124 990282000361 STMUK_0362 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005250921.1 401871 D 990282 CDS YP_005250922.1 378987758 403313..405271 1 NC_016863.1 type III restriction-modification system; methyltransferase (SW:T3MO_SALTY); restriction system; DNA methylase 405271 mod 990282000362 mod Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA methylase YP_005250922.1 403313 D 990282 CDS YP_005250923.1 378987759 405281..408253 1 NC_016863.1 type III restriction-modification system enzyme (SW:T3RE_SALTY); DNA helicase; DNA restriction enzyme 408253 res 990282000363 res Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA restriction enzyme YP_005250923.1 405281 D 990282 CDS YP_005250924.1 378987760 408530..408631 1 NC_016863.1 putative cytoplasmic protein 408631 990282000364 STMUK_0365 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250924.1 408530 D 990282 CDS YP_005250925.1 378987761 408748..410151 1 NC_016863.1 similar to Escherichia coli probable third cytochrome oxidase, subunit I (AAC74063.1); cytochrome BD2 subunit I 410151 990282000365 STMUK_0366 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome BD2 subunit I YP_005250925.1 408748 D 990282 CDS YP_005250926.1 378987762 410148..411158 1 NC_016863.1 similar to Escherichia coli cytochrome d terminal oxidase polypeptide subunit II (AAC73828.1); cytochrome BD2 subunit II 411158 990282000366 STMUK_0367 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome BD2 subunit II YP_005250926.1 410148 D 990282 CDS YP_005250927.1 378987763 411175..411399 1 NC_016863.1 putative cytoplasmic protein 411399 990282000367 STMUK_0368 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005250927.1 411175 D 990282 CDS YP_005250928.1 378987764 411495..412499 1 NC_016863.1 putative XylS/AraC transcriptional activator (gi|3094022); AraC family; putative transcriptional regulator 412499 990282000368 STMUK_0369 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005250928.1 411495 D 990282 CDS YP_005250929.1 378987765 412645..414753 1 NC_016863.1 ferrioxamine B receptor precursor (SW:FOXA_SALTY); ferrioxamine receptor 414753 foxA 990282000369 foxA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ferrioxamine receptor YP_005250929.1 412645 D 990282 CDS YP_005250930.1 378987766 complement(414794..415426) 1 NC_016863.1 similar to Escherichia coli putative cytochrome subunit of dehydrogenase (AAC73431.1); putative transport protein 415426 yahN 990282000370 yahN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005250930.1 414794 R 990282 CDS YP_005250931.1 378987767 415658..415933 1 NC_016863.1 hypothetical protein 415933 yahO 990282000371 yahO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250931.1 415658 D 990282 CDS YP_005250932.1 378987768 complement(416069..417694) 1 NC_016863.1 propionate catabolism operon regulatory protein (SW:PRPR_SALTY); EBP family; prp operon regulator 417694 prpR 990282000372 prpR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 prp operon regulator YP_005250932.1 416069 R 990282 CDS YP_005250933.1 378987769 417958..418845 1 NC_016863.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 418845 prpB 990282000373 prpB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-methylisocitrate lyase YP_005250933.1 417958 D 990282 CDS YP_005250934.1 378987770 418968..420137 1 NC_016863.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 420137 prpC 990282000374 prpC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 methylcitrate synthase YP_005250934.1 418968 D 990282 CDS YP_005250935.1 378987771 420177..421628 1 NC_016863.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 421628 mmgE 990282000375 mmgE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-methylcitrate dehydratase YP_005250935.1 420177 D 990282 CDS YP_005250936.1 378987772 421669..423555 1 NC_016863.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed; propionyl-CoA synthetase 423555 prpE 990282000376 prpE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 propionyl-CoA synthetase YP_005250936.1 421669 D 990282 CDS YP_005250937.1 378987773 complement(423659..424633) 1 NC_016863.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 424633 hemB 990282000377 hemB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 delta-aminolevulinic acid dehydratase YP_005250937.1 423659 R 990282 CDS YP_005250938.1 378987774 425146..428082 1 NC_016863.1 similar to Escherichia coli putative flagellin structural protein (AAC73477.1); similar to 3rd module of ATP-binding components of transporters; flagellar protein 428082 yaiU 990282000378 yaiU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar protein YP_005250938.1 425146 D 990282 CDS YP_005250939.1 378987775 428168..428791 1 NC_016863.1 putative DNA-binding transcriptional regulator 428791 yaiV 990282000379 yaiV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA-binding transcriptional regulator YP_005250939.1 428168 D 990282 CDS YP_005250940.1 378987776 complement(428836..429966) 1 NC_016863.1 this protein has no known enzymatic function; beta-lactam binding protein AmpH 429966 ampH 990282000380 ampH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 beta-lactam binding protein AmpH YP_005250940.1 428836 R 990282 CDS YP_005250941.1 378987777 430340..431560 1 NC_016863.1 in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transporter 431560 sbmA 990282000381 sbmA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transporter YP_005250941.1 430340 D 990282 CDS YP_005250942.1 378987778 431575..432669 1 NC_016863.1 putative outer membrane lipoprotein 432669 yaiW 990282000382 yaiW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005250942.1 431575 D 990282 CDS YP_005250943.1 378987779 complement(432707..433015) 1 NC_016863.1 putative inner membrane protein 433015 yaiY 990282000383 yaiY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005250943.1 432707 R 990282 CDS YP_005250944.1 378987780 433283..433498 1 NC_016863.1 putative inner membrane protein 433498 yaiZ 990282000384 yaiZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005250944.1 433283 D 990282 CDS YP_005250945.1 378987781 complement(433524..434618) 1 NC_016863.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 434618 ddl 990282000385 ddl Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-alanyl-alanine synthetase A YP_005250945.1 433524 R 990282 CDS YP_005250946.1 378987782 434696..435409 1 NC_016863.1 putative inner membrane protein 435409 990282000386 STMUK_0387 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005250946.1 434696 D 990282 CDS YP_005250947.1 378987783 435578..436789 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC74137.1); putative permease 436789 990282000387 STMUK_0388 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005250947.1 435578 D 990282 CDS YP_005250948.1 378987784 437080..437346 1 NC_016863.1 hypothetical protein 437346 yaiB 990282000388 yaiB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250948.1 437080 D 990282 CDS YP_005250949.1 378987785 437698..438018 1 NC_016863.1 similar to Escherichia coli protein induced by phosphate starvation (AAC73487.1); hypothetical protein 438018 psiF 990282000389 psiF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250949.1 437698 D 990282 CDS YP_005250950.1 378987786 438110..439222 1 NC_016863.1 catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynt; diguanylate cyclase AdrA 439222 adrA 990282000390 adrA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 diguanylate cyclase AdrA YP_005250950.1 438110 D 990282 CDS YP_005250951.1 378987787 complement(439237..440046) 1 NC_016863.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 440046 proC 990282000391 proC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyrroline-5-carboxylate reductase YP_005250951.1 439237 R 990282 CDS YP_005250952.1 378987788 440186..440641 1 NC_016863.1 hypothetical protein 440641 yaiI 990282000392 yaiI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250952.1 440186 D 990282 CDS YP_005250953.1 378987789 440826..441371 1 NC_016863.1 type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 441371 aroL 990282000393 aroL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 shikimate kinase YP_005250953.1 440826 D 990282 CDS YP_005250954.1 378987790 441398..441589 1 NC_016863.1 hypothetical protein 441589 yaiA 990282000394 yaiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250954.1 441398 D 990282 CDS YP_005250955.1 378987791 441840..442517 1 NC_016863.1 similar to Escherichia coli protein of aro operon; regulated by aroR (AAC73493.1); hypothetical protein 442517 aroM 990282000395 aroM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250955.1 441840 D 990282 CDS YP_005250956.1 378987792 442588..442872 1 NC_016863.1 hypothetical protein 442872 yaiE 990282000396 yaiE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250956.1 442588 D 990282 CDS YP_005250957.1 378987793 complement(442910..443821) 1 NC_016863.1 Required for efficient pilin antigenic variation; recombination associated protein 443821 rdgC 990282000397 rdgC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 recombination associated protein YP_005250957.1 442910 R 990282 CDS YP_005250958.1 378987794 443947..444855 1 NC_016863.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 444855 yajF 990282000398 yajF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fructokinase YP_005250958.1 443947 D 990282 CDS YP_005250959.1 378987795 complement(444877..446049) 1 NC_016863.1 member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; MFS transport protein AraJ 446049 araJ 990282000399 araJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 MFS transport protein AraJ YP_005250959.1 444877 R 990282 CDS YP_005250960.1 378987796 complement(446222..449362) 1 NC_016863.1 with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; exonuclease subunit SbcC 449362 sbcC 990282000400 sbcC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exonuclease subunit SbcC YP_005250960.1 446222 R 990282 CDS YP_005250961.1 378987797 complement(449359..450561) 1 NC_016863.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD 450561 sbcD 990282000401 sbcD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exonuclease subunit SbcD YP_005250961.1 449359 R 990282 CDS YP_005250962.1 378987798 450776..451465 1 NC_016863.1 two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; transcriptional regulator PhoB 451465 phoB 990282000402 phoB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator PhoB YP_005250962.1 450776 D 990282 CDS YP_005250963.1 378987799 451535..452830 1 NC_016863.1 membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 452830 phoR 990282000403 phoR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphate regulon sensor protein YP_005250963.1 451535 D 990282 CDS YP_005250964.1 378987800 453239..454558 1 NC_016863.1 branched-chain amino acid transport system II carrier protein (SW:BRNQ_SALTY); LIVCS family; LIV-II; branched-chain amino acid transporter 454558 brnQ 990282000404 brnQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 branched-chain amino acid transporter YP_005250964.1 453239 D 990282 CDS YP_005250965.1 378987801 454633..456003 1 NC_016863.1 cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; putative proline-specific permease 456003 proY 990282000405 proY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative proline-specific permease YP_005250965.1 454633 D 990282 CDS YP_005250966.1 378987802 456165..457982 1 NC_016863.1 similar to Escherichia coli maltodextrin glucosidase (AAC73506.1); maltodextrin glucosidase 457982 malZ 990282000406 malZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 maltodextrin glucosidase YP_005250966.1 456165 D 990282 CDS YP_005250967.1 378987803 complement(458054..458656) 1 NC_016863.1 similar to Escherichia coli alkyl hydroperoxide reductase C22 subunit; detoxification of hydroperoxides (AAC73706.1); putative thiol-alkyl hydroperoxide reductase 458656 990282000407 STMUK_0408 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative thiol-alkyl hydroperoxide reductase YP_005250967.1 458054 R 990282 CDS YP_005250968.1 378987804 complement(458866..459447) 1 NC_016863.1 Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; acyl carrier protein phosphodiesterase 459447 yajB 990282000408 yajB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acyl carrier protein phosphodiesterase YP_005250968.1 458866 R 990282 CDS YP_005250969.1 378987805 459541..460605 1 NC_016863.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 460605 queA 990282000409 queA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_005250969.1 459541 D 990282 CDS YP_005250970.1 378987806 460802..461929 1 NC_016863.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 461929 tgt 990282000410 tgt Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 queuine tRNA-ribosyltransferase YP_005250970.1 460802 D 990282 CDS YP_005250971.1 378987807 461952..462284 1 NC_016863.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 462284 yajC 990282000411 yajC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 preprotein translocase subunit YajC YP_005250971.1 461952 D 990282 CDS YP_005250972.1 378987808 462312..464159 1 NC_016863.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of; preprotein translocase subunit SecD 464159 secD 990282000412 secD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 preprotein translocase subunit SecD YP_005250972.1 462312 D 990282 CDS YP_005250973.1 378987809 464170..465141 1 NC_016863.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins f; preprotein translocase subunit SecF 465141 secF 990282000413 secF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 preprotein translocase subunit SecF YP_005250973.1 464170 D 990282 CDS YP_005250974.1 378987810 465289..465654 1 NC_016863.1 hypothetical protein 465654 990282000414 STMUK_0415 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250974.1 465289 D 990282 CDS YP_005250975.1 378987811 465680..466372 1 NC_016863.1 putative regulatory protein 466372 990282000415 STMUK_0416 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005250975.1 465680 D 990282 CDS YP_005250976.1 378987812 466542..466889 1 NC_016863.1 hypothetical 12.6 kDa protein in secF-tsx intergenic region (SW:YAJD_SALTY); hypothetical protein 466889 yajD 990282000416 yajD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250976.1 466542 D 990282 CDS YP_005250977.1 378987813 complement(467137..467463) 1 NC_016863.1 hypothetical protein 14.5K (gi|1073681); putative inner membrane protein 467463 990282000417 STMUK_0418 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005250977.1 467137 R 990282 CDS YP_005250978.1 378987814 complement(467518..468381) 1 NC_016863.1 nucleoside-specific channel-forming protein TSX precursor (SW:TSX_SALTY); receptor of phage T6 and colicin K; nucleoside channel 468381 tsx 990282000418 tsx Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nucleoside channel YP_005250978.1 467518 R 990282 CDS YP_005250979.1 378987815 complement(468681..469220) 1 NC_016863.1 hypothetical protein 469220 yajI 990282000419 yajI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005250979.1 468681 R 990282 CDS YP_005250980.1 378987816 469372..469821 1 NC_016863.1 transcriptional regulator NrdR 469821 nrdR 990282000420 nrdR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator NrdR YP_005250980.1 469372 D 990282 CDS YP_005250981.1 378987817 469825..470928 1 NC_016863.1 riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine a; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 470928 ribD 990282000421 ribD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase YP_005250981.1 469825 D 990282 CDS YP_005250982.1 378987818 471017..471487 1 NC_016863.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl; 6,7-dimethyl-8-ribityllumazine synthase 471487 ribH 990282000422 ribH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 6,7-dimethyl-8-ribityllumazine synthase YP_005250982.1 471017 D 990282 CDS YP_005250983.1 378987819 471508..471927 1 NC_016863.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 471927 nusB 990282000423 nusB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcription antitermination protein NusB YP_005250983.1 471508 D 990282 CDS YP_005250984.1 378987820 472006..472983 1 NC_016863.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 472983 thiL 990282000424 thiL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiamine monophosphate kinase YP_005250984.1 472006 D 990282 CDS YP_005250985.1 378987821 472961..473476 1 NC_016863.1 hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 473476 pgpA 990282000425 pgpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphatidylglycerophosphatase A YP_005250985.1 472961 D 990282 CDS YP_005250986.1 378987822 complement(473580..474554) 1 NC_016863.1 similar to Escherichia coli putative NAD(P)H-dependent xylose reductase (AAC73522.1); K+ channel protein; putative oxidoreductase 474554 yajO 990282000426 yajO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidoreductase YP_005250986.1 473580 R 990282 CDS YP_005250987.1 378987823 complement(474611..476473) 1 NC_016863.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 476473 dxs 990282000427 dxs Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 1-deoxy-D-xylulose-5-phosphate synthase YP_005250987.1 474611 R 990282 CDS YP_005250988.1 378987824 complement(476497..477396) 1 NC_016863.1 similar to Escherichia coli geranyltranstransferase; farnesyldiphosphate synthase (AAC73524.1); geranyltranstransferase 477396 ispA 990282000428 ispA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 geranyltranstransferase YP_005250988.1 476497 R 990282 CDS YP_005250989.1 378987825 complement(477397..477639) 1 NC_016863.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 477639 xseB 990282000429 xseB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exodeoxyribonuclease VII small subunit YP_005250989.1 477397 R 990282 CDS YP_005250990.1 378987826 477849..479297 1 NC_016863.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 479297 thiI 990282000430 thiI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiamine biosynthesis protein ThiI YP_005250990.1 477849 D 990282 CDS YP_005250991.1 378987827 complement(479341..480138) 1 NC_016863.1 probable membrane component of 2-aminoethylphosphonate transporter PhnV (gi|11354255); 2-aminoethylphosphonate transporter 480138 phnV 990282000431 phnV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-aminoethylphosphonate transporter YP_005250991.1 479341 R 990282 CDS YP_005250992.1 378987828 complement(480141..481001) 1 NC_016863.1 probable membrane component of 2-aminoethylphosphonate transporter PhnU (gi|11354254); 2-aminoethylphosphonate transporter 481001 phnU 990282000432 phnU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-aminoethylphosphonate transporter YP_005250992.1 480141 R 990282 CDS YP_005250993.1 378987829 complement(481004..482113) 1 NC_016863.1 probable ATPase component of 2-aminoethylphosphonate transporter PhnT (gi|11354253); 2-aminoethylphosphonate transporter 482113 phnT 990282000433 phnT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-aminoethylphosphonate transporter YP_005250993.1 481004 R 990282 CDS YP_005250994.1 378987830 complement(482119..483132) 1 NC_016863.1 probable periplasmic binding-protein of the2-aminoethylphosphonate transporter phnS (gi|11354256); 2-aminoethylphosphonate transporter 483132 phnS 990282000434 phnS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-aminoethylphosphonate transporter YP_005250994.1 482119 R 990282 CDS YP_005250995.1 378987831 complement(483330..484049) 1 NC_016863.1 probable repressor protein of GntR family PhnR (gi|11354257); 2-aminoethylphosphonate transport protein 484049 phnR 990282000435 phnR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-aminoethylphosphonate transport protein YP_005250995.1 483330 R 990282 CDS YP_005250996.1 378987832 484189..485292 1 NC_016863.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 485292 phnW 990282000436 phnW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-aminoethylphosphonate--pyruvate transaminase YP_005250996.1 484189 D 990282 CDS YP_005250997.1 378987833 485299..486111 1 NC_016863.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 486111 phnX 990282000437 phnX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphonoacetaldehyde hydrolase YP_005250997.1 485299 D 990282 CDS YP_005250998.1 378987834 complement(486208..486798) 1 NC_016863.1 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme (SW:THIJ_SALTY); DJ-1 family protein 486798 thiJ 990282000438 thiJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DJ-1 family protein YP_005250998.1 486208 R 990282 CDS YP_005250999.1 378987835 complement(486761..487672) 1 NC_016863.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 487672 apbA 990282000439 apbA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-dehydropantoate 2-reductase YP_005250999.1 486761 R 990282 CDS YP_005251000.1 378987836 487780..488289 1 NC_016863.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in ac; putative nucleotide-binding protein 488289 yajQ 990282000440 yajQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative nucleotide-binding protein YP_005251000.1 487780 D 990282 CDS YP_005251001.1 378987837 complement(488336..489685) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC73530.1); MFS family; putative transport protein 489685 yajR 990282000441 yajR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005251001.1 488336 R 990282 CDS YP_005251002.1 378987838 complement(489928..490089) 1 NC_016863.1 IS903 transposase 490089 990282000442 STMUK_0443 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 IS903 transposase YP_005251002.1 489928 R 990282 CDS YP_005251003.1 378987839 490237..491748 1 NC_016863.1 hypothetical protein 491748 990282000443 STMUK_0444 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251003.1 490237 D 990282 CDS YP_005251004.1 378987840 491970..493253 1 NC_016863.1 TPR repeat; hypothetical protein 493253 990282000444 STMUK_0445 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251004.1 491970 D 990282 CDS YP_005251005.1 378987841 complement(493335..494225) 1 NC_016863.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 494225 cyoE 990282000445 cyoE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 protoheme IX farnesyltransferase YP_005251005.1 493335 R 990282 CDS YP_005251006.1 378987842 complement(494237..494566) 1 NC_016863.1 similar to Escherichia coli cytochrome o ubiquinol oxidase subunit IV (AAC73532.1); cytochrome o ubiquinol oxidase subunit IV 494566 cyoD 990282000446 cyoD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome o ubiquinol oxidase subunit IV YP_005251006.1 494237 R 990282 CDS YP_005251007.1 378987843 complement(494566..495180) 1 NC_016863.1 similar to Escherichia coli cytochrome o ubiquinol oxidase subunit III (AAC73533.1); cytochrome o ubiquinol oxidase subunit III 495180 cyoC 990282000447 cyoC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome o ubiquinol oxidase subunit III YP_005251007.1 494566 R 990282 CDS YP_005251008.1 378987844 complement(495170..497161) 1 NC_016863.1 similar to Escherichia coli cytochrome o ubiquinol oxidase subunit I (AAC73534.1); cytochrome o ubiquinol oxidase subunit I 497161 cyoB 990282000448 cyoB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome o ubiquinol oxidase subunit I YP_005251008.1 495170 R 990282 CDS YP_005251009.1 378987845 complement(497172..498128) 1 NC_016863.1 similar to Escherichia coli cytochrome o ubiquinol oxidase subunit II (AAC73535.1); cytochrome o ubiquinol oxidase subunit II 498128 cyoA 990282000449 cyoA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome o ubiquinol oxidase subunit II YP_005251009.1 497172 R 990282 CDS YP_005251010.1 378987846 complement(498581..500056) 1 NC_016863.1 in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter 500056 ampG 990282000450 ampG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 muropeptide transporter YP_005251010.1 498581 R 990282 CDS YP_005251011.1 378987847 complement(500100..500732) 1 NC_016863.1 similar to Escherichia coli putative polymerase/proteinase (AAC73537.1); hypothetical protein 500732 yajG 990282000451 yajG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251011.1 500100 R 990282 CDS YP_005251012.1 378987848 500982..501299 1 NC_016863.1 positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; transcriptional regulator BolA 501299 bolA 990282000452 bolA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator BolA YP_005251012.1 500982 D 990282 CDS YP_005251013.1 378987849 501646..502944 1 NC_016863.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 502944 tig 990282000453 tig Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 trigger factor YP_005251013.1 501646 D 990282 CDS YP_005251014.1 378987850 503191..503814 1 NC_016863.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 503814 clpP 990282000454 clpP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent Clp protease proteolytic subunit YP_005251014.1 503191 D 990282 CDS YP_005251015.1 378987851 504066..505337 1 NC_016863.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 505337 clpX 990282000455 clpX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent protease ATP-binding subunit ClpX YP_005251015.1 504066 D 990282 CDS YP_005251016.1 378987852 505523..507877 1 NC_016863.1 similar to Escherichia coli ATP-dependent protease La; heat shock K-protein (AAC73542.1); cleaves RcsA and SulA; heat shock K-protein; DNA binding activity; DNA-binding ATP-dependent protease La 507877 lon 990282000456 lon Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding ATP-dependent protease La YP_005251016.1 505523 D 990282 CDS YP_005251017.1 378987853 508086..508358 1 NC_016863.1 histone-like DNA-binding protein; transcriptional regulator HU subunit beta 508358 hupB 990282000457 hupB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator HU subunit beta YP_005251017.1 508086 D 990282 CDS YP_005251018.1 378987854 508649..510520 1 NC_016863.1 similar to Escherichia coli putative protease maturation protein (AAC73544.1); peptidyl-prolyl cis-trans isomerase 510520 cypD 990282000458 cypD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptidyl-prolyl cis-trans isomerase YP_005251018.1 508649 D 990282 CDS YP_005251019.1 378987855 510670..511044 1 NC_016863.1 similar to DNA-binding proteins; putative DNA uptake protein 511044 ybaV 990282000459 ybaV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA uptake protein YP_005251019.1 510670 D 990282 CDS YP_005251020.1 378987856 511148..511546 1 NC_016863.1 putative esterase 511546 ybaW 990282000460 ybaW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative esterase YP_005251020.1 511148 D 990282 CDS YP_005251021.1 378987857 complement(511652..512347) 1 NC_016863.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and H; queuosine biosynthesis protein QueC 512347 ybaX 990282000461 ybaX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 queuosine biosynthesis protein QueC YP_005251021.1 511652 R 990282 CDS YP_005251022.1 378987858 complement(512412..514112) 1 NC_016863.1 putative ABC transporter periplasmic binding protein 514112 ybaE 990282000462 ybaE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter periplasmic binding protein YP_005251022.1 512412 R 990282 CDS YP_005251023.1 378987859 514213..515031 1 NC_016863.1 putative hydrolase 515031 cof 990282000463 cof Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase YP_005251023.1 514213 D 990282 CDS YP_005251024.1 378987860 515218..515676 1 NC_016863.1 transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 515676 tnpA_6 990282000464 tnpA_6 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transposase for IS200 YP_005251024.1 515218 D 990282 CDS YP_005251025.1 378987861 complement(515792..516847) 1 NC_016863.1 similar to Escherichia coli cysteine synthase B; O-acetylserine sulfhydrolase B (AAC75474.1); putative cysteine synthase/cystathionine beta-synthase 516847 990282000465 STMUK_0466 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cysteine synthase/cystathionine beta-synthase YP_005251025.1 515792 R 990282 CDS YP_005251026.1 378987862 516960..517418 1 NC_016863.1 similar to Escherichia coli putative LRP-like transcriptional regulator (AAC73550.1); AsnC family; putative transcriptional regulator 517418 ybaO 990282000466 ybaO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005251026.1 516960 D 990282 CDS YP_005251027.1 378987863 517459..519231 1 NC_016863.1 similar to Escherichia coli ATP-binding component of a transport system (AAC73551.1); putative ABC superfamily transporter; putative multidrug transporter membrane ATP-binding components 519231 mdlA 990282000467 mdlA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative multidrug transporter membrane ATP-binding components YP_005251027.1 517459 D 990282 CDS YP_005251028.1 378987864 519224..521005 1 NC_016863.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC73552.1); putative ABC superfamily; putative multidrug transporter membrane ATP-binding components 521005 mdlB 990282000468 mdlB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative multidrug transporter membrane ATP-binding components YP_005251028.1 519224 D 990282 CDS YP_005251029.1 378987865 521218..521556 1 NC_016863.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interac; nitrogen regulatory protein P-II 2 521556 glnK 990282000469 glnK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrogen regulatory protein P-II 2 YP_005251029.1 521218 D 990282 CDS YP_005251030.1 378987866 521588..522874 1 NC_016863.1 similar to Escherichia coli probable ammonium transporter (AAC73554.1); Amt family; ammonium transporter 522874 amtB 990282000470 amtB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ammonium transporter YP_005251030.1 521588 D 990282 CDS YP_005251031.1 378987867 complement(522974..523834) 1 NC_016863.1 similar to Escherichia coli acyl-CoA thioesterase II (AAC73555.1); acyl-CoA thioesterase II 523834 tesB 990282000471 tesB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acyl-CoA thioesterase II YP_005251031.1 522974 R 990282 CDS YP_005251032.1 378987868 524049..524618 1 NC_016863.1 similar to Escherichia coli glycoprotein/polysaccharide metabolism (AAC73556.1); hypothetical protein 524618 ybaY 990282000472 ybaY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251032.1 524049 D 990282 CDS YP_005251033.1 378987869 complement(524651..525040) 1 NC_016863.1 putative methyltransferase 525040 ybaZ 990282000473 ybaZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative methyltransferase YP_005251033.1 524651 R 990282 CDS YP_005251034.1 378987870 complement(525271..526821) 1 NC_016863.1 putative diguanylate cyclase/phosphodiesterase domain 2; hypothetical protein 526821 ylaB 990282000474 ylaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251034.1 525271 R 990282 CDS YP_005251035.1 378987871 527046..527306 1 NC_016863.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially g; 50S ribosomal protein L31 527306 rpmE2 990282000475 rpmE2 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L31 YP_005251035.1 527046 D 990282 CDS YP_005251036.1 378987872 527312..527452 1 NC_016863.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc io; 50S ribosomal protein L36 527452 rpmJ 990282000476 rpmJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L36 YP_005251036.1 527312 D 990282 CDS YP_005251037.1 378987873 complement(527508..527978) 1 NC_016863.1 putative inner membrane protein 527978 ylaC 990282000477 ylaC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251037.1 527508 R 990282 CDS YP_005251038.1 378987874 complement(528095..528646) 1 NC_016863.1 similar to Escherichia coli putative transferase (AAC73561.1); maltose O-acetyltransferase 528646 maa 990282000478 maa Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 maltose O-acetyltransferase YP_005251038.1 528095 R 990282 CDS YP_005251039.1 378987875 complement(528825..529043) 1 NC_016863.1 with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein 529043 hha 990282000479 hha Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hemolysin expression-modulating protein YP_005251039.1 528825 R 990282 CDS YP_005251040.1 378987876 complement(529071..529445) 1 NC_016863.1 hypothetical protein 529445 ybaJ 990282000480 ybaJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251040.1 529071 R 990282 CDS YP_005251041.1 378987877 complement(529941..533090) 1 NC_016863.1 similar to Escherichia coli acridine efflux pump (AAC73564.1); RND family; acridine efflux pump 533090 acrB 990282000481 acrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acridine efflux pump YP_005251041.1 529941 R 990282 CDS YP_005251042.1 378987878 complement(533113..534306) 1 NC_016863.1 similar to Escherichia coli acridine efflux pump (AAC73565.1); acridine efflux pump 534306 acrA 990282000482 acrA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acridine efflux pump YP_005251042.1 533113 R 990282 CDS YP_005251043.1 378987879 534448..535101 1 NC_016863.1 regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; DNA-binding transcriptional repressor AcrR 535101 acrR 990282000483 acrR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional repressor AcrR YP_005251043.1 534448 D 990282 CDS YP_005251044.1 378987880 535220..538582 1 NC_016863.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 538582 aefA 990282000484 aefA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 potassium efflux protein KefA YP_005251044.1 535220 D 990282 CDS YP_005251045.1 378987881 complement(538624..539559) 1 NC_016863.1 putative transposase 539559 990282000485 STMUK_0486 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transposase YP_005251045.1 538624 R 990282 CDS YP_005251046.1 378987882 complement(539629..539796) 1 NC_016863.1 hypothetical protein 539796 ybaM 990282000486 ybaM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251046.1 539629 R 990282 CDS YP_005251047.1 378987883 complement(539810..540325) 1 NC_016863.1 PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulat; primosomal replication protein N'' 540325 priC 990282000487 priC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 primosomal replication protein N'' YP_005251047.1 539810 R 990282 CDS YP_005251048.1 378987884 540406..540783 1 NC_016863.1 similar to Escherichia coli putative gene 58 (AAC73570.1); hypothetical protein 540783 ybaN 990282000488 ybaN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251048.1 540406 D 990282 CDS YP_005251049.1 378987885 540936..541487 1 NC_016863.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 541487 apt 990282000489 apt Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 adenine phosphoribosyltransferase YP_005251049.1 540936 D 990282 CDS YP_005251050.1 378987886 541601..543529 1 NC_016863.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to; DNA polymerase III subunits gamma and tau 543529 dnaX 990282000490 dnaX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase III subunits gamma and tau YP_005251050.1 541601 D 990282 CDS YP_005251051.1 378987887 543575..543904 1 NC_016863.1 hypothetical protein 543904 ybaB 990282000491 ybaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251051.1 543575 D 990282 CDS YP_005251052.1 378987888 543904..544509 1 NC_016863.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 544509 recR 990282000492 recR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 recombination protein RecR YP_005251052.1 543904 D 990282 CDS YP_005251053.1 378987889 544596..546494 1 NC_016863.1 molecular chaperone; heat shock protein 90 546494 htpG 990282000493 htpG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 heat shock protein 90 YP_005251053.1 544596 D 990282 CDS YP_005251054.1 378987890 546735..547379 1 NC_016863.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 547379 adk 990282000494 adk Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 adenylate kinase YP_005251054.1 546735 D 990282 CDS YP_005251055.1 378987891 547608..548570 1 NC_016863.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 548570 hemH 990282000495 hemH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ferrochelatase YP_005251055.1 547608 D 990282 CDS YP_005251056.1 378987892 complement(548567..549538) 1 NC_016863.1 similar to Escherichia coli putative lipase (AAC73578.1); acetyl esterase 549538 aes 990282000496 aes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetyl esterase YP_005251056.1 548567 R 990282 CDS YP_005251057.1 378987893 549691..550995 1 NC_016863.1 similar to Escherichia coli inosine-guanosine kinase (AAC73579.1); inosine-guanosine kinase 550995 gsk 990282000497 gsk Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 inosine-guanosine kinase YP_005251057.1 549691 D 990282 CDS YP_005251058.1 378987894 complement(551044..552720) 1 NC_016863.1 YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; putative cation:proton antiport protein 552720 ybaL 990282000498 ybaL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cation:proton antiport protein YP_005251058.1 551044 R 990282 CDS YP_005251059.1 378987895 complement(552935..554155) 1 NC_016863.1 similar to Escherichia coli fosmidomycin resistance protein (AAC73581.1); MFS family; putative transport protein 554155 fsr 990282000499 fsr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005251059.1 552935 R 990282 CDS YP_005251060.1 378987896 554328..555980 1 NC_016863.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 555980 ushA 990282000500 ushA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic YP_005251060.1 554328 D 990282 CDS YP_005251061.1 378987897 complement(556097..556576) 1 NC_016863.1 protein YbaK (SW:YBAK_SALTY); hypothetical protein 556576 ybaK 990282000501 ybaK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251061.1 556097 R 990282 CDS YP_005251062.1 378987898 complement(556778..557572) 1 NC_016863.1 similar to Escherichia coli putative ligase (AAC73584.1); putative cytoplasmic protein 557572 ybaP 990282000502 ybaP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251062.1 556778 R 990282 CDS YP_005251063.1 378987899 complement(557658..558485) 1 NC_016863.1 hypothetical protein 558485 990282000503 STMUK_0504 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251063.1 557658 R 990282 CDS YP_005251064.1 378987900 complement(558639..561140) 1 NC_016863.1 similar to Escherichia coli putative ATPase (AAC73586.1); copper exporting ATPase 561140 copA 990282000504 copA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 copper exporting ATPase YP_005251064.1 558639 R 990282 CDS YP_005251065.1 378987901 561250..561666 1 NC_016863.1 activator of copper-responsive regulon genes; DNA-binding transcriptional regulator CueR 561666 cueR 990282000505 cueR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator CueR YP_005251065.1 561250 D 990282 CDS YP_005251066.1 378987902 complement(561667..562119) 1 NC_016863.1 implicated in regulation of membrane protease activity; hypothetical protein 562119 ybbJ 990282000506 ybbJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251066.1 561667 R 990282 CDS YP_005251067.1 378987903 complement(562116..563033) 1 NC_016863.1 similar to Escherichia coli putative protease (AAC73591.1); putative inner membrane protein 563033 ybbK 990282000507 ybbK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251067.1 562116 R 990282 CDS YP_005251068.1 378987904 563180..563857 1 NC_016863.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC73592.1); putative ABC transporter ATP-binding protein YbbL 563857 ybbL 990282000508 ybbL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter ATP-binding protein YbbL YP_005251068.1 563180 D 990282 CDS YP_005251069.1 378987905 563844..564623 1 NC_016863.1 similar to Escherichia coli putative metal resistance protein (AAC73593.1); YbbM family; putative transport protein 564623 ybbM 990282000509 ybbM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005251069.1 563844 D 990282 CDS YP_005251070.1 378987906 complement(564709..565563) 1 NC_016863.1 similar to Escherichia coli putative thioredoxin-like protein (AAC73594.1); putative thioredoxin protein 565563 ybbN 990282000510 ybbN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative thioredoxin protein YP_005251070.1 564709 R 990282 CDS YP_005251071.1 378987907 complement(565623..566393) 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC73595.1); short chain dehydrogenase 566393 ybbO 990282000511 ybbO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 short chain dehydrogenase YP_005251071.1 565623 R 990282 CDS YP_005251072.1 378987908 complement(566548..567162) 1 NC_016863.1 similar to Escherichia coli acyl-CoA thioesterase I; also functions as protease I (AAC73596.1); lysophospholipaseL(I); multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 567162 tesA 990282000512 tesA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 YP_005251072.1 566548 R 990282 CDS YP_005251073.1 378987909 567133..567819 1 NC_016863.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC73597.1); putative ABC superfamily ATP-binding protein; putative ABC transporter ATP-binding protein YbbA 567819 ybbA 990282000513 ybbA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter ATP-binding protein YbbA YP_005251073.1 567133 D 990282 CDS YP_005251074.1 378987910 567816..570230 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC73598.1); putative inner membrane protein 570230 ybbP 990282000514 ybbP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251074.1 567816 D 990282 CDS YP_005251075.1 378987911 570416..571549 1 NC_016863.1 putative outer membrane protein 571549 990282000515 STMUK_0516 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005251075.1 570416 D 990282 CDS YP_005251076.1 378987912 571806..572636 1 NC_016863.1 similar to Escherichia coli putative lipoprotein (AAC73308.1); cell division protein; ABC transporter ATP-binding protein 572636 sfbA 990282000516 sfbA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ABC transporter ATP-binding protein YP_005251076.1 571806 D 990282 CDS YP_005251077.1 378987913 572673..573689 1 NC_016863.1 similar to Escherichia coli ATP-binding component of a transporter (AAC73310.1); cell division protein; ABC transporter ATP-binding protein 573689 sfbB 990282000517 sfbB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ABC transporter ATP-binding protein YP_005251077.1 572673 D 990282 CDS YP_005251078.1 378987914 573682..574341 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein (AAC73309.1); binding-protein-dependent; putative ABC transporter permease 574341 sfbC 990282000518 sfbC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter permease YP_005251078.1 573682 D 990282 CDS YP_005251079.1 378987915 complement(574380..575474) 1 NC_016863.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 575474 ybbB 990282000519 ybbB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA 2-selenouridine synthase YP_005251079.1 574380 R 990282 CDS YP_005251080.1 378987916 complement(575544..576470) 1 NC_016863.1 activator of the allDC-ylbA operon involved in allantoin utilization; DNA-binding transcriptional activator AllS 576470 ybbS 990282000520 ybbS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator AllS YP_005251080.1 575544 R 990282 CDS YP_005251081.1 378987917 576697..577179 1 NC_016863.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 577179 allA 990282000521 allA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ureidoglycolate hydrolase YP_005251081.1 576697 D 990282 CDS YP_005251082.1 378987918 577258..578076 1 NC_016863.1 regulates operons involved in the utilization of allantoin; DNA-binding transcriptional repressor AllR 578076 allR 990282000522 allR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional repressor AllR YP_005251082.1 577258 D 990282 CDS YP_005251083.1 378987919 578161..579942 1 NC_016863.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 579942 gcl 990282000523 gcl Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glyoxylate carboligase YP_005251083.1 578161 D 990282 CDS YP_005251084.1 378987920 579955..580731 1 NC_016863.1 similar to Escherichia coli glyoxylate-induced protein (AAC73610.1); hydroxypyruvate isomerase 580731 gip 990282000524 gip Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydroxypyruvate isomerase YP_005251084.1 579955 D 990282 CDS YP_005251085.1 378987921 580832..581710 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC73611.1); tartronic semialdehyde reductase 581710 glxR 990282000525 glxR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tartronic semialdehyde reductase YP_005251085.1 580832 D 990282 CDS YP_005251086.1 378987922 581776..583023 1 NC_016863.1 similar to Escherichia coli putative transport protein; cryptic; joins former yjiZ and yjjL (AAC77312.1); putative permease 583023 990282000526 STMUK_0527 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005251086.1 581776 D 990282 CDS YP_005251087.1 378987923 583099..583353 1 NC_016863.1 putative cytoplasmic protein 583353 ybbV 990282000527 ybbV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251087.1 583099 D 990282 CDS YP_005251088.1 378987924 583260..584573 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC73613.1); NCS1 family; allantoin permease 584573 allP 990282000528 allP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 allantoin permease YP_005251088.1 583260 D 990282 CDS YP_005251089.1 378987925 584652..586013 1 NC_016863.1 Plays a crucial role on both purine and pyrimidine metabolism; allantoinase 586013 allB 990282000529 allB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 allantoinase YP_005251089.1 584652 D 990282 CDS YP_005251090.1 378987926 586072..587370 1 NC_016863.1 similar to Escherichia coli putative transport (AAC73615.1); putative purine permease YbbY 587370 ybbY 990282000530 ybbY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative purine permease YbbY YP_005251090.1 586072 D 990282 CDS YP_005251091.1 378987927 587393..588541 1 NC_016863.1 glycerate kinase 588541 glxK 990282000531 glxK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycerate kinase YP_005251091.1 587393 D 990282 CDS YP_005251092.1 378987928 complement(588621..589406) 1 NC_016863.1 hypothetical protein 589406 ylbA 990282000532 ylbA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251092.1 588621 R 990282 CDS YP_005251093.1 378987929 complement(589417..590652) 1 NC_016863.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidogl; allantoate amidohydrolase 590652 allC 990282000533 allC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 allantoate amidohydrolase YP_005251093.1 589417 R 990282 CDS YP_005251094.1 378987930 complement(590674..591723) 1 NC_016863.1 similar to Escherichia coli putative malate dehydrogenase (AAC73619.1); ureidoglycolate dehydrogenase 591723 allD 990282000534 allD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ureidoglycolate dehydrogenase YP_005251094.1 590674 R 990282 CDS YP_005251095.1 378987931 592054..593718 1 NC_016863.1 multicopy suppressor of dominant negative ftsH mutations; membrane protein FdrA 593718 fdrA 990282000535 fdrA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 membrane protein FdrA YP_005251095.1 592054 D 990282 CDS YP_005251096.1 378987932 593728..594987 1 NC_016863.1 putative cytoplasmic protein 594987 ylbE 990282000536 ylbE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251096.1 593728 D 990282 CDS YP_005251097.1 378987933 594999..595808 1 NC_016863.1 similar to Escherichia coli putative carboxylase (AAC73622.1); putative cytoplasmic protein 595808 ylbF 990282000537 ylbF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251097.1 594999 D 990282 CDS YP_005251098.1 378987934 595812..596705 1 NC_016863.1 forms a homodimer; may be used to synthesize carbomyl phosphate from ATP and carbamate; carbamate kinase 596705 arcC 990282000538 arcC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 carbamate kinase YP_005251098.1 595812 D 990282 CDS YP_005251099.1 378987935 complement(596746..597813) 1 NC_016863.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 597813 purK 990282000539 purK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_005251099.1 596746 R 990282 CDS YP_005251100.1 378987936 complement(597810..598319) 1 NC_016863.1 Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit 598319 purE 990282000540 purE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_005251100.1 597810 R 990282 CDS YP_005251101.1 378987937 complement(598437..599159) 1 NC_016863.1 catalyzes the formation of 2,3; UDP-2,3-diacylglucosamine hydrolase 599159 lpxH 990282000541 lpxH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-2,3-diacylglucosamine hydrolase YP_005251101.1 598437 R 990282 CDS YP_005251102.1 378987938 complement(599162..599656) 1 NC_016863.1 similar to Escherichia coli peptidyl-prolyl cis-trans isomerase B; rotamase B (AAC73627.1); peptidyl-prolyl cis-trans isomerase B 599656 ppiB 990282000542 ppiB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptidyl-prolyl cis-trans isomerase B YP_005251102.1 599162 R 990282 CDS YP_005251103.1 378987939 599829..601214 1 NC_016863.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 601214 cysS 990282000543 cysS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cysteinyl-tRNA synthetase YP_005251103.1 599829 D 990282 CDS YP_005251104.1 378987940 complement(601258..602082) 1 NC_016863.1 putative outer membrane protein 602082 990282000544 STMUK_0545 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005251104.1 601258 R 990282 CDS YP_005251105.1 378987941 complement(602079..602516) 1 NC_016863.1 putative inner membrane protein 602516 990282000545 STMUK_0546 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251105.1 602079 R 990282 CDS YP_005251106.1 378987942 complement(602509..603054) 1 NC_016863.1 putative membrane-bound metal-dependent hydrolase 603054 ybcI 990282000546 ybcI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative membrane-bound metal-dependent hydrolase YP_005251106.1 602509 R 990282 CDS YP_005251107.1 378987943 complement(603182..603394) 1 NC_016863.1 hypothetical protein 603394 ybcJ 990282000547 ybcJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251107.1 603182 R 990282 CDS YP_005251108.1 378987944 complement(603396..604262) 1 NC_016863.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 604262 folD 990282000548 folD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_005251108.1 603396 R 990282 CDS YP_005251109.1 378987945 604809..605366 1 NC_016863.1 type-1 fimbrial protein; A chain precursor; type-1A pilin (SW:FM1A_SALTY); major type 1 subunit; fimbrin 605366 fimA 990282000549 fimA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fimbrin YP_005251109.1 604809 D 990282 CDS YP_005251110.1 378987946 605442..605975 1 NC_016863.1 fimbrin-like protein FimI (SW:FIMI_SALTY); fimbrial protein 605975 fimI 990282000550 fimI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fimbrial protein YP_005251110.1 605442 D 990282 CDS YP_005251111.1 378987947 606019..606711 1 NC_016863.1 chaperone protein FimC precursor (SW:FIMC_SALTY); required for type 1 fimbriae; periplasmic chaperone 606711 fimC 990282000551 fimC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 periplasmic chaperone YP_005251111.1 606019 D 990282 CDS YP_005251112.1 378987948 606742..609354 1 NC_016863.1 outer membrane usher protein FimD precursor (SW:FIMD_SALTY); outer membrane usher protein 609354 fimD 990282000552 fimD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane usher protein YP_005251112.1 606742 D 990282 CDS YP_005251113.1 378987949 609369..610376 1 NC_016863.1 FIMH protein precursor (SW:FIMH_SALTY); minor fimbrial subunit 610376 fimH 990282000553 fimH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 minor fimbrial subunit YP_005251113.1 609369 D 990282 CDS YP_005251114.1 378987950 610386..610904 1 NC_016863.1 fimbrial-like protein FimF precursor (SW:FIMF_SALTY); putative fimbrial protein 610904 fimF 990282000554 fimF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial protein YP_005251114.1 610386 D 990282 CDS YP_005251115.1 378987951 complement(610950..611582) 1 NC_016863.1 activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ 611582 fimZ 990282000555 fimZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator FimZ YP_005251115.1 610950 R 990282 CDS YP_005251116.1 378987952 complement(612186..612908) 1 NC_016863.1 fimbriae Y protein (SW:FIMY_SALTY); putative regulatory protein 612908 fimY 990282000556 fimY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005251116.1 612186 R 990282 CDS YP_005251117.1 378987953 complement(612927..613238) 1 NC_016863.1 putative diguanylate cyclase/phosphodiesterase domain 0; hypothetical protein 613238 990282000557 STMUK_0558 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251117.1 612927 R 990282 CDS YP_005251118.1 378987954 complement(613400..613996) 1 NC_016863.1 fimbriae W protein (SW:FIMW_SALTY); putative fimbrial protein 613996 fimW 990282000558 fimW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial protein YP_005251118.1 613400 R 990282 CDS YP_005251119.1 378987955 complement(614287..614475) 1 NC_016863.1 similar to Escherichia coli prophage DLP12 integrase (AAC73638.1); integrase 614475 990282000560 STMUK_0561 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 integrase YP_005251119.1 614287 R 990282 CDS YP_005251120.1 378987956 complement(614892..615110) 1 NC_016863.1 putative transposase 615110 990282000561 STMUK_0562 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transposase YP_005251120.1 614892 R 990282 CDS YP_005251121.1 378987957 complement(615497..617149) 1 NC_016863.1 putative inner membrane protein 617149 990282000562 STMUK_0563 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251121.1 615497 R 990282 CDS YP_005251122.1 378987958 complement(617130..618056) 1 NC_016863.1 similar to Escherichia coli putative glycan biosynthesis enzyme (AAC75410.1); putative glycosyltransferase 618056 yfdH 990282000563 yfdH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyltransferase YP_005251122.1 617130 R 990282 CDS YP_005251123.1 378987959 complement(618053..618415) 1 NC_016863.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 618415 rfbI 990282000564 rfbI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 CDP-6-deoxy-delta-3,4-glucoseen reductase YP_005251123.1 618053 R 990282 CDS YP_005251124.1 378987960 complement(619283..619612) 1 NC_016863.1 similar to Escherichia coli putative 2-component sensor protein (AAC73671.1); sensor kinase 619612 990282000565 STMUK_0566 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sensor kinase YP_005251124.1 619283 R 990282 CDS YP_005251125.1 378987961 619721..619900 1 NC_016863.1 similar to E. coli putative inner membranecomponent for iron transport (AAC73676.1); Blastp hit toAAC73676.1 (1047 aa); putative transport protein 619900 990282000566 STMUK_0567 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005251125.1 619721 D 990282 CDS YP_005251126.1 378987962 complement(619951..620805) 1 NC_016863.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC73408.1); AraC/XylS family; putative transcriptional regulator 620805 990282000567 STMUK_0568 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005251126.1 619951 R 990282 CDS YP_005251127.1 378987963 621021..622346 1 NC_016863.1 Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 622346 990282000568 STMUK_0569 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyridine nucleotide-disulfide oxidoreductase YP_005251127.1 621021 D 990282 CDS YP_005251128.1 378987964 622503..622739 1 NC_016863.1 hypothetical protein 622739 990282000569 STMUK_0570 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251128.1 622503 D 990282 CDS YP_005251129.1 378987965 622752..623312 1 NC_016863.1 putative inner membrane protein 623312 990282000570 STMUK_0571 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251129.1 622752 D 990282 CDS YP_005251130.1 378987966 complement(623391..624566) 1 NC_016863.1 putative DNA repair ATPase 624566 990282000571 STMUK_0572 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA repair ATPase YP_005251130.1 623391 R 990282 CDS YP_005251131.1 378987967 624892..626286 1 NC_016863.1 similar to Escherichia coli phenylalanine-specific transport system (AAC73677.1); APC family; phenylalanine transporter 626286 pheP 990282000572 pheP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phenylalanine transporter YP_005251131.1 624892 D 990282 CDS YP_005251132.1 378987968 complement(626328..627575) 1 NC_016863.1 similar to Escherichia coli putative transport (AAC73678.1); hypothetical protein 627575 ybdG 990282000573 ybdG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251132.1 626328 R 990282 CDS YP_005251133.1 378987969 627886..629856 1 NC_016863.1 outer membrane esterase (gi|2896133); N-acetyl phenylalanine beta-naphthyl esterase; outer membrane esterase 629856 apeE 990282000574 apeE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane esterase YP_005251133.1 627886 D 990282 CDS YP_005251134.1 378987970 630023..632752 1 NC_016863.1 putative inner membrane protein 632752 990282000575 STMUK_0576 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251134.1 630023 D 990282 CDS YP_005251135.1 378987971 complement(632880..633866) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC76396.1); putative phosphosugar isomerase 633866 990282000576 STMUK_0577 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphosugar isomerase YP_005251135.1 632880 R 990282 CDS YP_005251136.1 378987972 complement(633933..634976) 1 NC_016863.1 similar to Escherichia coli L-glutamine/D-fructose-6-phosphate aminotransferase (AAC76752.1); putative inner membrane protein 634976 990282000577 STMUK_0578 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251136.1 633933 R 990282 CDS YP_005251137.1 378987973 complement(635009..635863) 1 NC_016863.1 similar to Escherichia coli PTS enzyme IID; mannose-specific (AAC74889.1); putative PTS system mannose-specific enzyme IID 635863 990282000578 STMUK_0579 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative PTS system mannose-specific enzyme IID YP_005251137.1 635009 R 990282 CDS YP_005251138.1 378987974 complement(635866..636609) 1 NC_016863.1 similar to Escherichia coli PTS enzyme IIC; mannose-specific (AAC74888.1); putative inner membrane protein 636609 990282000579 STMUK_0580 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251138.1 635866 R 990282 CDS YP_005251139.1 378987975 complement(636624..637094) 1 NC_016863.1 similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative PTS system mannose-specific enzyme IIAB 637094 990282000580 STMUK_0581 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative PTS system mannose-specific enzyme IIAB YP_005251139.1 636624 R 990282 CDS YP_005251140.1 378987976 complement(637072..637521) 1 NC_016863.1 similar to Escherichia coli PTS enzyme IIAB; mannose-specific (AAC74887.1); putative PTS system mannose-specific enzyme IIAB 637521 990282000581 STMUK_0582 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative PTS system mannose-specific enzyme IIAB YP_005251140.1 637072 R 990282 CDS YP_005251141.1 378987977 complement(637721..638374) 1 NC_016863.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 638374 nfnB 990282000582 nfnB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dihydropteridine reductase YP_005251141.1 637721 R 990282 CDS YP_005251142.1 378987978 complement(638471..638839) 1 NC_016863.1 hypothetical protein 638839 ybdF 990282000583 ybdF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251142.1 638471 R 990282 CDS YP_005251143.1 378987979 complement(638839..639420) 1 NC_016863.1 putative regulatory protein 639420 990282000584 STMUK_0585 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005251143.1 638839 R 990282 CDS YP_005251144.1 378987980 639709..640050 1 NC_016863.1 resistance against oxidative stress protein A (gi|9885772); putative regulatory protein 640050 990282000585 STMUK_0586 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005251144.1 639709 D 990282 CDS YP_005251145.1 378987981 complement(640056..640304) 1 NC_016863.1 putative inner membrane protein 640304 ybdJ 990282000586 ybdJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251145.1 640056 R 990282 CDS YP_005251146.1 378987982 complement(640371..641489) 1 NC_016863.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 641489 ybdK 990282000587 ybdK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 carboxylate-amine ligase YP_005251146.1 640371 R 990282 CDS YP_005251147.1 378987983 complement(641501..642205) 1 NC_016863.1 similar to Escherichia coli enterochelin synthetase component D (AAC73684.1); phoshpantetheinyltransferase; phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex 642205 entD 990282000588 entD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex YP_005251147.1 641501 R 990282 CDS YP_005251148.1 378987984 complement(642251..644506) 1 NC_016863.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 644506 fepA 990282000589 fepA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane receptor FepA YP_005251148.1 642251 R 990282 CDS YP_005251149.1 378987985 644695..645909 1 NC_016863.1 similar to Escherichia coli enterochelin esterase (AAC73686.1); enterobactin/ferric enterobactin esterase 645909 fes 990282000590 fes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 enterobactin/ferric enterobactin esterase YP_005251149.1 644695 D 990282 CDS YP_005251150.1 378987986 645940..646158 1 NC_016863.1 putative cytoplasmic protein 646158 ybdZ 990282000591 ybdZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251150.1 645940 D 990282 CDS YP_005251151.1 378987987 646155..650039 1 NC_016863.1 with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; enterobactin synthase subunit F 650039 entF 990282000592 entF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 enterobactin synthase subunit F YP_005251151.1 646155 D 990282 CDS YP_005251152.1 378987988 650289..651425 1 NC_016863.1 part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein FepE 651425 fepE 990282000593 fepE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ferric enterobactin transport protein FepE YP_005251152.1 650289 D 990282 CDS YP_005251153.1 378987989 complement(651478..652272) 1 NC_016863.1 with FepBDE is involved in the transport of ferric enterobactin; iron-enterobactin transporter ATP-binding protein 652272 fepC 990282000594 fepC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 iron-enterobactin transporter ATP-binding protein YP_005251153.1 651478 R 990282 CDS YP_005251154.1 378987990 complement(652269..653258) 1 NC_016863.1 with FepBCD is involved in the transport of ferric enterobactin; iron-enterobactin transporter permease 653258 fepG 990282000595 fepG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 iron-enterobactin transporter permease YP_005251154.1 652269 R 990282 CDS YP_005251155.1 378987991 complement(653258..654265) 1 NC_016863.1 with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin transporter membrane protein 654265 fepD 990282000596 fepD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 iron-enterobactin transporter membrane protein YP_005251155.1 653258 R 990282 CDS YP_005251156.1 378987992 654376..655620 1 NC_016863.1 protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 655620 ybdA 990282000597 ybdA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 enterobactin exporter EntS YP_005251156.1 654376 D 990282 CDS YP_005251157.1 378987993 complement(655683..656639) 1 NC_016863.1 with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein 656639 fepB 990282000598 fepB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 iron-enterobactin transporter periplasmic binding protein YP_005251157.1 655683 R 990282 CDS YP_005251158.1 378987994 656948..658123 1 NC_016863.1 synthesizes isochorismate acid from chorismate; isochorismate synthase 658123 entC 990282000599 entC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 isochorismate synthase YP_005251158.1 656948 D 990282 CDS YP_005251159.1 378987995 658133..659743 1 NC_016863.1 bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; enterobactin synthase subunit E 659743 entE 990282000600 entE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 enterobactin synthase subunit E YP_005251159.1 658133 D 990282 CDS YP_005251160.1 378987996 659757..660614 1 NC_016863.1 similar to Escherichia coli 2,3-dihydro-2,3-dihydroxybenzoate synthetase; isochroismatase (AAC73696.1); 2,3-dihydro-2,3-dihydroxybenzoate synthetase 660614 entB 990282000601 entB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2,3-dihydro-2,3-dihydroxybenzoate synthetase YP_005251160.1 659757 D 990282 CDS YP_005251161.1 378987997 660614..661369 1 NC_016863.1 catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase 661369 entA 990282000602 entA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2,3-dihydroxybenzoate-2,3-dehydrogenase YP_005251161.1 660614 D 990282 CDS YP_005251162.1 378987998 661372..661785 1 NC_016863.1 possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein 661785 ybdB 990282000603 ybdB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251162.1 661372 D 990282 CDS YP_005251163.1 378987999 661967..664072 1 NC_016863.1 similar to Escherichia coli carbon starvation protein (AAC73699.1); carbon starvation protein 664072 cstA 990282000604 cstA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 carbon starvation protein YP_005251163.1 661967 D 990282 CDS YP_005251164.1 378988000 664136..664333 1 NC_016863.1 putative cytoplasmic protein 664333 ybdD 990282000605 ybdD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251164.1 664136 D 990282 CDS YP_005251165.1 378988001 complement(664369..665457) 1 NC_016863.1 member of the iron-containing alcohol dehydrogenase family; unknown function; hypothetical protein 665457 ybdH 990282000606 ybdH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251165.1 664369 R 990282 CDS YP_005251166.1 378988002 665584..666744 1 NC_016863.1 catalyzes the transfer of an amino moiety; putative aminotransferase 666744 ybdL 990282000607 ybdL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative aminotransferase YP_005251166.1 665584 D 990282 CDS YP_005251167.1 378988003 complement(666745..667362) 1 NC_016863.1 putative transcriptional regulator 667362 ybdM 990282000608 ybdM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005251167.1 666745 R 990282 CDS YP_005251168.1 378988004 complement(667335..668570) 1 NC_016863.1 PAPS reductase/FAD synthetase; putative 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase 668570 ybdN 990282000609 ybdN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase YP_005251168.1 667335 R 990282 CDS YP_005251169.1 378988005 complement(668736..669638) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73704.1); LysR family; putative transcriptional regulator 669638 ybdO 990282000610 ybdO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005251169.1 668736 R 990282 CDS YP_005251170.1 378988006 complement(669955..670701) 1 NC_016863.1 Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 670701 dsbG 990282000611 dsbG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 disulfide isomerase/thiol-disulfide oxidase YP_005251170.1 669955 R 990282 CDS YP_005251171.1 378988007 671142..671705 1 NC_016863.1 with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase subunit C 671705 ahpC 990282000612 ahpC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alkyl hydroperoxide reductase subunit C YP_005251171.1 671142 D 990282 CDS YP_005251172.1 378988008 671947..673512 1 NC_016863.1 alkyl hydroperoxide reductase subunit F (SW:AHPF_SALTY); detoxification of hydroperoxides; alkyl hydroperoxide reductase F52a subunit 673512 ahpF 990282000613 ahpF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alkyl hydroperoxide reductase F52a subunit YP_005251172.1 671947 D 990282 CDS YP_005251173.1 378988009 673844..674404 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase component (AAC74663.1); putative anaerobic dehydrogenase component 674404 990282000614 STMUK_0615 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative anaerobic dehydrogenase component YP_005251173.1 673844 D 990282 CDS YP_005251174.1 378988010 674397..676676 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase; major subunit (AAC74659.1); putative oxidoreductase protein 676676 990282000615 STMUK_0616 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidoreductase protein YP_005251174.1 674397 D 990282 CDS YP_005251175.1 378988011 677032..677799 1 NC_016863.1 similar to Escherichia coli putative DMSO reductase anchor subunit (AAC74662.1); putative hydrogenase protein 677799 990282000617 STMUK_0618 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrogenase protein YP_005251175.1 677032 D 990282 CDS YP_005251176.1 378988012 complement(677867..678295) 1 NC_016863.1 similar to UspA and related nucleotide-binding protein; putative universal stress protein 678295 ybdQ 990282000618 ybdQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative universal stress protein YP_005251176.1 677867 R 990282 CDS YP_005251177.1 378988013 678518..679756 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC73709.1); putative dehydrogenase 679756 ybdR 990282000619 ybdR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dehydrogenase YP_005251177.1 678518 D 990282 CDS YP_005251178.1 378988014 complement(679839..680249) 1 NC_016863.1 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator 680249 rnk 990282000620 rnk Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nucleoside diphosphate kinase regulator YP_005251178.1 679839 R 990282 CDS YP_005251179.1 378988015 complement(680484..681290) 1 NC_016863.1 similar to Escherichia coli RNase I; cleaves phosphodiester bond between any two nucleotides (AAC73712.1); ribonuclease I 681290 rna 990282000621 rna Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonuclease I YP_005251179.1 680484 R 990282 CDS YP_005251180.1 378988016 complement(681400..682863) 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC73713.1); DASS family; citrate/succinate transport antiport protein 682863 citT 990282000622 citT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 citrate/succinate transport antiport protein YP_005251180.1 681400 R 990282 CDS YP_005251181.1 378988017 complement(682901..683797) 1 NC_016863.1 catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase 683797 citG 990282000623 citG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 triphosphoribosyl-dephospho-CoA synthase YP_005251181.1 682901 R 990282 CDS YP_005251182.1 378988018 complement(683769..684320) 1 NC_016863.1 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase 684320 citX 990282000624 citX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase YP_005251182.1 683769 R 990282 CDS YP_005251183.1 378988019 complement(684324..685853) 1 NC_016863.1 similar to Escherichia coli citrate lyase alpha chain (AAC73716.1); citrate lyase subunit alpha/citrate-ACP transferase 685853 citF 990282000625 citF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 citrate lyase subunit alpha/citrate-ACP transferase YP_005251183.1 684324 R 990282 CDS YP_005251184.1 378988020 complement(685863..686771) 1 NC_016863.1 similar to Escherichia coli citrate lyase beta chain; acyl lyase subunit (AAC73717.1); citrate lyase subunit beta 686771 citE 990282000626 citE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 citrate lyase subunit beta YP_005251184.1 685863 R 990282 CDS YP_005251185.1 378988021 complement(686768..687064) 1 NC_016863.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 687064 citD 990282000627 citD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 citrate lyase subunit gamma YP_005251185.1 686768 R 990282 CDS YP_005251186.1 378988022 complement(687061..688137) 1 NC_016863.1 similar to Escherichia coli citrate lyase synthetase; citrate (pro-3S)-lyase ligase (AAC73719.1); citrate lyase synthetase 688137 citC 990282000628 citC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 citrate lyase synthetase YP_005251186.1 687061 R 990282 CDS YP_005251187.1 378988023 688522..690183 1 NC_016863.1 similar to Escherichia coli putative sensor-type protein (AAC73720.1); in two-component regulatory system with DpiA; regulation of cit operon and plasmid inheritance genes; sensory histidine kinase 690183 dpiB 990282000629 dpiB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sensory histidine kinase YP_005251187.1 688522 D 990282 CDS YP_005251188.1 378988024 690152..690832 1 NC_016863.1 regulates the expression of citAB in citrate fermentation; two-component response regulator DpiA 690832 dpiA 990282000630 dpiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 two-component response regulator DpiA YP_005251188.1 690152 D 990282 CDS YP_005251189.1 378988025 complement(690886..692271) 1 NC_016863.1 responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC 692271 dcuC 990282000631 dcuC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 C4-dicarboxylate transporter DcuC YP_005251189.1 690886 R 990282 CDS YP_005251190.1 378988026 692650..693222 1 NC_016863.1 catalyzes the transfer of palmitate to lipid A; palmitoyl transferase 693222 pagP 990282000632 pagP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 palmitoyl transferase YP_005251190.1 692650 D 990282 CDS YP_005251191.1 378988027 693410..693619 1 NC_016863.1 member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE 693619 cspE 990282000633 cspE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cold shock protein CspE YP_005251191.1 693410 D 990282 CDS YP_005251192.1 378988028 complement(693677..694060) 1 NC_016863.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 694060 ccrB 990282000634 ccrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 camphor resistance protein CrcB YP_005251192.1 693677 R 990282 CDS YP_005251193.1 378988029 694151..694939 1 NC_016863.1 similar to Escherichia coli putative amidase (AAC73727.1); putative hydrolase 694939 ybeM 990282000635 ybeM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase YP_005251193.1 694151 D 990282 CDS YP_005251194.1 378988030 695068..695271 1 NC_016863.1 TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a; twin arginine translocase protein E 695271 tatE 990282000636 tatE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 twin arginine translocase protein E YP_005251194.1 695068 D 990282 CDS YP_005251195.1 378988031 complement(695357..696322) 1 NC_016863.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 696322 lipA 990282000637 lipA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipoyl synthase YP_005251195.1 695357 R 990282 CDS YP_005251196.1 378988032 complement(696528..697481) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73730.1); LysR family; putative DNA-binding transcriptional regulator 697481 ybeF 990282000638 ybeF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA-binding transcriptional regulator YP_005251196.1 696528 R 990282 CDS YP_005251197.1 378988033 complement(697783..698358) 1 NC_016863.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 698358 lipB 990282000639 lipB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipoate-protein ligase B YP_005251197.1 697783 R 990282 CDS YP_005251198.1 378988034 complement(698524..698787) 1 NC_016863.1 hypothetical protein 698787 ybeD 990282000640 ybeD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251198.1 698524 R 990282 CDS YP_005251199.1 378988035 complement(698896..700107) 1 NC_016863.1 penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase 700107 dacA 990282000641 dacA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-alanyl-D-alanine carboxypeptidase YP_005251199.1 698896 R 990282 CDS YP_005251200.1 378988036 complement(700247..701392) 1 NC_016863.1 similar to Escherichia coli minor lipoprotein (AAC73734.1); rare lipoprotein A 701392 rlpA 990282000642 rlpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 rare lipoprotein A YP_005251200.1 700247 R 990282 CDS YP_005251201.1 378988037 complement(701403..702515) 1 NC_016863.1 similar to Escherichia coli rod shape-determining membrane protein; sensitivity to radiation and drugs (AAC73735.1); cell elongation in exponential phase; cell wall shape-determining protein 702515 mrdB 990282000643 mrdB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell wall shape-determining protein YP_005251201.1 701403 R 990282 CDS YP_005251202.1 378988038 complement(702518..704419) 1 NC_016863.1 similar to Escherichia coli cell elongation e phase protein; peptidoglycan synthetase; penicillin-binding protein 2 (AAC73736.1); penicillin-binding protein 2 704419 mrdA 990282000644 mrdA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 penicillin-binding protein 2 YP_005251202.1 702518 R 990282 CDS YP_005251203.1 378988039 complement(704450..704917) 1 NC_016863.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 704917 ybeA 990282000645 ybeA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 rRNA large subunit methyltransferase YP_005251203.1 704450 R 990282 CDS YP_005251204.1 378988040 complement(704921..705238) 1 NC_016863.1 similar to putative ACR plant Iojap protein; hypothetical protein 705238 ybeB 990282000646 ybeB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251204.1 704921 R 990282 CDS YP_005251205.1 378988041 complement(705567..706175) 1 NC_016863.1 alpha-ribazole-5'-phosphate phosphatase (SW:COBC_SALTY); cobalamin synthesis; alpha ribazole-5'-P phosphatase 706175 cobC 990282000647 cobC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alpha ribazole-5'-P phosphatase YP_005251205.1 705567 R 990282 CDS YP_005251206.1 378988042 706272..707366 1 NC_016863.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 707366 cobD 990282000648 cobD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cobalamin biosynthesis protein YP_005251206.1 706272 D 990282 CDS YP_005251207.1 378988043 complement(707341..707982) 1 NC_016863.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 707982 nadD 990282000649 nadD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nicotinic acid mononucleotide adenylyltransferase YP_005251207.1 707341 R 990282 CDS YP_005251208.1 378988044 complement(707984..709015) 1 NC_016863.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 709015 holA 990282000650 holA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase III subunit delta YP_005251208.1 707984 R 990282 CDS YP_005251209.1 378988045 complement(709015..709605) 1 NC_016863.1 rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RlpB 709605 rlpB 990282000651 rlpB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 LPS-assembly lipoprotein RlpB YP_005251209.1 709015 R 990282 CDS YP_005251210.1 378988046 complement(709620..712202) 1 NC_016863.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl; leucyl-tRNA synthetase 712202 leuS 990282000652 leuS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 leucyl-tRNA synthetase YP_005251210.1 709620 R 990282 CDS YP_005251211.1 378988047 712439..712780 1 NC_016863.1 similar to Escherichia coli altronate hydrolase N-terminus (AAC76126.1); putative hydrolase 712780 990282000653 STMUK_0654 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase YP_005251211.1 712439 D 990282 CDS YP_005251212.1 378988048 712797..713969 1 NC_016863.1 similar to Escherichia coli putative hydrolase C-terminus (AAC76162.1); putative hydrolase 713969 990282000654 STMUK_0655 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase YP_005251212.1 712797 D 990282 CDS YP_005251213.1 378988049 714019..714972 1 NC_016863.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 714972 990282000655 STMUK_0656 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-keto-3-deoxygluconate permease YP_005251213.1 714019 D 990282 CDS YP_005251214.1 378988050 715040..716968 1 NC_016863.1 similar to Escherichia coli response regulator of ato; ornithine decarboxylase antizyme; sensor ATOS (AAC75280.1); putative sigma-54 dependent transcriptional regulator 716968 990282000656 STMUK_0657 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sigma-54 dependent transcriptional regulator YP_005251214.1 715040 D 990282 CDS YP_005251215.1 378988051 717061..717534 1 NC_016863.1 similar to Escherichia coli putative alpha helical protein (AAC73744.1); hypothetical protein 717534 ybeL 990282000657 ybeL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251215.1 717061 D 990282 CDS YP_005251216.1 378988052 complement(717573..718568) 1 NC_016863.1 TPR repeat; hypothetical protein 718568 ybeQ 990282000658 ybeQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251216.1 717573 R 990282 CDS YP_005251217.1 378988053 718693..719400 1 NC_016863.1 putative cytoplasmic protein 719400 ybeR 990282000659 ybeR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251217.1 718693 D 990282 CDS YP_005251218.1 378988054 719397..720830 1 NC_016863.1 similar to Escherichia coli putative enzyme of polynucleotide modification (AAC73747.1); DnaJ family; putative molecular chaperone 720830 ybeS 990282000660 ybeS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative molecular chaperone YP_005251218.1 719397 D 990282 CDS YP_005251219.1 378988055 721535..723007 1 NC_016863.1 DnaJ family; putative molecular chaperone 723007 ybeV 990282000662 ybeV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative molecular chaperone YP_005251219.1 721535 D 990282 CDS YP_005251220.1 378988056 complement(723029..724708) 1 NC_016863.1 similar to Escherichia coli putative DnaK protein (AAC73751.1); similar to Hsp70 in Hsc66 subfamily; putative heatshock protein 724708 hscC 990282000663 hscC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative heatshock protein YP_005251220.1 723029 R 990282 CDS YP_005251221.1 378988057 complement(724784..726022) 1 NC_016863.1 putative cytoplasmic protein 726022 990282000664 STMUK_0665 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251221.1 724784 R 990282 CDS YP_005251222.1 378988058 complement(726054..726989) 1 NC_016863.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 726989 rihA 990282000665 rihA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonucleoside hydrolase 1 YP_005251222.1 726054 R 990282 CDS YP_005251223.1 378988059 complement(727106..727831) 1 NC_016863.1 similar to Escherichia coli ATP-binding protein of glutamate/aspartate transport system (AAC73753.1); ABC superfamily ATP-binding protein; glutamate/aspartate transporter 727831 gltL 990282000666 gltL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamate/aspartate transporter YP_005251223.1 727106 R 990282 CDS YP_005251224.1 378988060 complement(727831..728505) 1 NC_016863.1 similar to Escherichia coli glutamate/aspartate transport system permease (AAC73754.1); ABC superfamily membrane protein; glutamate/aspartate transporter 728505 gltK 990282000667 gltK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamate/aspartate transporter YP_005251224.1 727831 R 990282 CDS YP_005251225.1 378988061 complement(728505..729245) 1 NC_016863.1 similar to Escherichia coli glutamate/aspartate transport system permease (AAC73755.1); ABC superfamily membrane protein; glutamate/aspartate transporter 729245 gltJ 990282000668 gltJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamate/aspartate transporter YP_005251225.1 728505 R 990282 CDS YP_005251226.1 378988062 complement(729405..730331) 1 NC_016863.1 similar to Escherichia coli putative periplasmic binding transport protein (AAC73756.1); ABC superfamily binding protein; glutamate and aspartate transporter subunit 730331 gltI 990282000669 gltI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamate and aspartate transporter subunit YP_005251226.1 729405 R 990282 CDS YP_005251227.1 378988063 complement(730668..732206) 1 NC_016863.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 732206 lnt 990282000670 lnt Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 apolipoprotein N-acyltransferase YP_005251227.1 730668 R 990282 CDS YP_005251228.1 378988064 complement(732226..733104) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC73759.1); contains putative CBS domain; putative transport protein 733104 ybeX 990282000671 ybeX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005251228.1 732226 R 990282 CDS YP_005251229.1 378988065 complement(733262..733735) 1 NC_016863.1 hypothetical protein in cutE-corC intergenic region (SW:YBEY_SALTY); putative metalloprotease 733735 ybeY 990282000672 ybeY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative metalloprotease YP_005251229.1 733262 R 990282 CDS YP_005251230.1 378988066 complement(733732..734817) 1 NC_016863.1 similar to Escherichia coli putative ATP-binding protein in pho regulon (AAC73761.1); putative phosphate starvation-inducible protein 734817 phoL 990282000673 phoL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphate starvation-inducible protein YP_005251230.1 733732 R 990282 CDS YP_005251231.1 378988067 complement(734983..736407) 1 NC_016863.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 736407 miaB 990282000674 miaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 (dimethylallyl)adenosine tRNA methylthiotransferase YP_005251231.1 734983 R 990282 CDS YP_005251232.1 378988068 736551..737726 1 NC_016863.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 737726 yleB 990282000675 yleB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_005251232.1 736551 D 990282 CDS YP_005251233.1 378988069 complement(737793..738368) 1 NC_016863.1 putative inner membrane protein 738368 990282000676 STMUK_0677 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251233.1 737793 R 990282 CDS YP_005251234.1 378988070 complement(739435..741099) 1 NC_016863.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 741099 asnB 990282000684 asnB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 asparagine synthetase B YP_005251234.1 739435 R 990282 CDS YP_005251235.1 378988071 complement(741389..742141) 1 NC_016863.1 similar to Escherichia coli N-acetylglucosamine metabolism (AAC73769.1); UMP phosphatase 742141 nagD 990282000685 nagD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UMP phosphatase YP_005251235.1 741389 R 990282 CDS YP_005251236.1 378988072 complement(742188..743408) 1 NC_016863.1 similar to Escherichia coli transcriptional repressor of nag; N-acetylglucosamine operon (AAC73770.1); NagC/XylR family; N-acetylglucosamine operon transcriptional repressor 743408 nagC 990282000686 nagC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-acetylglucosamine operon transcriptional repressor YP_005251236.1 742188 R 990282 CDS YP_005251237.1 378988073 complement(743413..744567) 1 NC_016863.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase 744567 nagA 990282000687 nagA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-acetylglucosamine-6-phosphate deacetylase YP_005251237.1 743413 R 990282 CDS YP_005251238.1 378988074 complement(744627..745427) 1 NC_016863.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 745427 nagB 990282000688 nagB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucosamine-6-phosphate deaminase YP_005251238.1 744627 R 990282 CDS YP_005251239.1 378988075 745754..747706 1 NC_016863.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group t; PTS system N-acetyl glucosamine specific transporter subunit IIABC 747706 nagE 990282000689 nagE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system N-acetyl glucosamine specific transporter subunit IIABC YP_005251239.1 745754 D 990282 CDS YP_005251240.1 378988076 747917..749584 1 NC_016863.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 749584 glnS 990282000690 glnS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutaminyl-tRNA synthetase YP_005251240.1 747917 D 990282 CDS YP_005251241.1 378988077 750030..751436 1 NC_016863.1 putative outer membrane protein 751436 ybfM 990282000691 ybfM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005251241.1 750030 D 990282 CDS YP_005251242.1 378988078 751486..751818 1 NC_016863.1 putative lipoprotein 751818 ybfN 990282000692 ybfN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative lipoprotein YP_005251242.1 751486 D 990282 CDS YP_005251243.1 378988079 complement(751867..753171) 1 NC_016863.1 citrate-proton symporter (citrate transporter). (SW:CIT1_SALTY); citrate-proton symporter 753171 citA 990282000693 citA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 citrate-proton symporter YP_005251243.1 751867 R 990282 CDS YP_005251244.1 378988080 complement(753222..754361) 1 NC_016863.1 citrate utilization protein B (SW:CIT2_SALTY); citrate utilization protein b 754361 citB 990282000694 citB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 citrate utilization protein b YP_005251244.1 753222 R 990282 CDS YP_005251245.1 378988081 complement(754348..755751) 1 NC_016863.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 755751 990282000695 STMUK_0696 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tricarballylate dehydrogenase YP_005251245.1 754348 R 990282 CDS YP_005251246.1 378988082 complement(755849..756775) 1 NC_016863.1 similar to Escherichia coli nitrogen assimilation control protein (AAC75050.1); LysR family; putative transcriptional regulator 756775 990282000696 STMUK_0697 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005251246.1 755849 R 990282 CDS YP_005251247.1 378988083 complement(756890..757342) 1 NC_016863.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 757342 fur 990282000697 fur Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ferric uptake regulator YP_005251247.1 756890 R 990282 CDS YP_005251248.1 378988084 complement(757624..758154) 1 NC_016863.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 758154 fldA 990282000698 fldA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flavodoxin FldA YP_005251248.1 757624 R 990282 CDS YP_005251249.1 378988085 complement(758732..759502) 1 NC_016863.1 hypothetical protein 759502 ybfF 990282000700 ybfF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251249.1 758732 R 990282 CDS YP_005251250.1 378988086 759687..760229 1 NC_016863.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 760229 seqA 990282000701 seqA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 replication initiation regulator SeqA YP_005251250.1 759687 D 990282 CDS YP_005251251.1 378988087 760254..761894 1 NC_016863.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 761894 pgm 990282000702 pgm Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoglucomutase YP_005251251.1 760254 D 990282 CDS YP_005251252.1 378988088 complement(762009..762494) 1 NC_016863.1 putative cytoplasmic protein 762494 990282000703 STMUK_0704 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251252.1 762009 R 990282 CDS YP_005251253.1 378988089 complement(762559..763878) 1 NC_016863.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 763878 potE 990282000704 potE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putrescine transporter YP_005251253.1 762559 R 990282 CDS YP_005251254.1 378988090 complement(763875..766073) 1 NC_016863.1 similar to Escherichia coli ornithine decarboxylase isozyme; inducible (AAC73787.1); ornithine decarboxylase 766073 speF 990282000705 speF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ornithine decarboxylase YP_005251254.1 763875 R 990282 CDS YP_005251255.1 378988091 766471..766584 1 NC_016863.1 similar to hypothetical protein SeHA_C0823 (Pid: YP_002044733.1).; hypothetical protein 766584 990282000706 STMUK_0707 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251255.1 766471 D 990282 CDS YP_005251256.1 378988092 complement(766835..767512) 1 NC_016863.1 response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE 767512 kdpE 990282000707 kdpE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator KdpE YP_005251256.1 766835 R 990282 CDS YP_005251257.1 378988093 complement(767509..770193) 1 NC_016863.1 sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD 770193 kdpD 990282000708 kdpD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sensor protein KdpD YP_005251257.1 767509 R 990282 CDS YP_005251258.1 378988094 complement(770190..770774) 1 NC_016863.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 770774 kdpC 990282000709 kdpC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 potassium-transporting ATPase subunit C YP_005251258.1 770190 R 990282 CDS YP_005251259.1 378988095 complement(770783..772831) 1 NC_016863.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 772831 kdpB 990282000710 kdpB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 potassium-transporting ATPase subunit B YP_005251259.1 770783 R 990282 CDS YP_005251260.1 378988096 complement(772852..774531) 1 NC_016863.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 774531 kdpA 990282000711 kdpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 potassium-transporting ATPase subunit A YP_005251260.1 772852 R 990282 CDS YP_005251261.1 378988097 complement(774531..774620) 1 NC_016863.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit F 774620 kdpF 990282000712 kdpF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 potassium-transporting ATPase subunit F YP_005251261.1 774531 R 990282 CDS YP_005251262.1 378988098 774957..775163 1 NC_016863.1 hypothetical protein 775163 ybfA 990282000713 ybfA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251262.1 774957 D 990282 CDS YP_005251263.1 378988099 775274..776695 1 NC_016863.1 UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 776695 phrB 990282000714 phrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 deoxyribodipyrimidine photolyase YP_005251263.1 775274 D 990282 CDS YP_005251264.1 378988100 complement(776734..778215) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC73803.1); POT family transport protein 778215 ybgH 990282000715 ybgH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 POT family transport protein YP_005251264.1 776734 R 990282 CDS YP_005251265.1 378988101 778544..779287 1 NC_016863.1 putative hydrolase-oxidase 779287 ybgI 990282000716 ybgI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase-oxidase YP_005251265.1 778544 D 990282 CDS YP_005251266.1 378988102 779303..779959 1 NC_016863.1 similar to Escherichia coli putative carboxylase (AAC73805.1); putative carboxylase 779959 ybgJ 990282000717 ybgJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative carboxylase YP_005251266.1 779303 D 990282 CDS YP_005251267.1 378988103 779953..780885 1 NC_016863.1 similar to Escherichia coli putative carboxylase (AAC73806.1); putative carboxylase 780885 ybgK 990282000718 ybgK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative carboxylase YP_005251267.1 779953 D 990282 CDS YP_005251268.1 378988104 780875..781609 1 NC_016863.1 similar to Escherichia coli putative lactam utilization protein (AAC73807.1); LamB/YcsF family protein 781609 ybgL 990282000719 ybgL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 LamB/YcsF family protein YP_005251268.1 780875 D 990282 CDS YP_005251269.1 378988105 781933..782064 1 NC_016863.1 putative cytoplasmic protein 782064 990282000720 STMUK_0721 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251269.1 781933 D 990282 CDS YP_005251270.1 378988106 782124..782690 1 NC_016863.1 similar to Escherichia coli recombinase involved in phase variation; regulator for fimA (AAC77268.1); putative phage integrase 782690 990282000721 STMUK_0722 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage integrase YP_005251270.1 782124 D 990282 CDS YP_005251271.1 378988107 783150..783485 1 NC_016863.1 putative inner membrane protein 783485 990282000722 STMUK_0723 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251271.1 783150 D 990282 CDS YP_005251272.1 378988108 783487..784227 1 NC_016863.1 putative cytoplasmic protein 784227 990282000723 STMUK_0724 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251272.1 783487 D 990282 CDS YP_005251273.1 378988109 784513..785664 1 NC_016863.1 similar to Escherichia coli UDP-galactopyranose mutase (AAC75097.1); putative UDP-galactopyranose mutase 785664 990282000724 STMUK_0725 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative UDP-galactopyranose mutase YP_005251273.1 784513 D 990282 CDS YP_005251274.1 378988110 785661..786557 1 NC_016863.1 putative glycosyl transferase 786557 990282000725 STMUK_0726 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyl transferase YP_005251274.1 785661 D 990282 CDS YP_005251275.1 378988111 786570..787703 1 NC_016863.1 similar to Escherichia coli putative colanic acid biosynthesis glycosyl transferase (AAC75105.1); putative glycosyl transferase 787703 990282000726 STMUK_0727 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyl transferase YP_005251275.1 786570 D 990282 CDS YP_005251276.1 378988112 787832..788602 1 NC_016863.1 ABC transporter permease 788602 990282000727 STMUK_0728 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ABC transporter permease YP_005251276.1 787832 D 990282 CDS YP_005251277.1 378988113 788606..789316 1 NC_016863.1 similar to Escherichia coli ATP-binding component of putrescine transport system (AAC73942.1); putative ABC-type polysaccharide/polyol phosphate transport system ATPase component 789316 990282000728 STMUK_0729 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type polysaccharide/polyol phosphate transport system ATPase component YP_005251277.1 788606 D 990282 CDS YP_005251278.1 378988114 789410..791188 1 NC_016863.1 cell wall biogenesis; putative glycosyltransferase 791188 990282000729 STMUK_0730 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyltransferase YP_005251278.1 789410 D 990282 CDS YP_005251279.1 378988115 791381..792214 1 NC_016863.1 cell wall biogenesis; putative glycosyltransferase 792214 990282000730 STMUK_0731 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyltransferase YP_005251279.1 791381 D 990282 CDS YP_005251280.1 378988116 792272..794167 1 NC_016863.1 putative glycosyl transferase 794167 990282000731 STMUK_0732 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyl transferase YP_005251280.1 792272 D 990282 CDS YP_005251281.1 378988117 794235..794372 1 NC_016863.1 putative cytoplasmic protein 794372 990282000732 STMUK_0733 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251281.1 794235 D 990282 CDS YP_005251282.1 378988118 794421..795212 1 NC_016863.1 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has ap; endonuclease VIII 795212 nei 990282000733 nei Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 endonuclease VIII YP_005251282.1 794421 D 990282 CDS YP_005251283.1 378988119 complement(795267..796313) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC73809.1); putative transport protein 796313 abrB 990282000734 abrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005251283.1 795267 R 990282 CDS YP_005251284.1 378988120 complement(796450..797733) 1 NC_016863.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexa; type II citrate synthase 797733 gltA 990282000735 gltA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type II citrate synthase YP_005251284.1 796450 R 990282 CDS YP_005251285.1 378988121 797693..798079 1 NC_016863.1 putative inner membrane protein 798079 990282000736 STMUK_0737 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251285.1 797693 D 990282 CDS YP_005251286.1 378988122 798488..798877 1 NC_016863.1 similar to Escherichia coli succinate dehydrogenase; cytochrome b556 (AAC73815.1); succinate dehydrogenase cytochrome b556 large membrane subunit 798877 sdhC 990282000737 sdhC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 succinate dehydrogenase cytochrome b556 large membrane subunit YP_005251286.1 798488 D 990282 CDS YP_005251287.1 378988123 798871..799218 1 NC_016863.1 similar to Escherichia coli succinate dehydrogenase; hydrophobic subunit (AAC73816.1); succinate dehydrogenase cytochrome b556 small membrane subunit 799218 sdhD 990282000738 sdhD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 succinate dehydrogenase cytochrome b556 small membrane subunit YP_005251287.1 798871 D 990282 CDS YP_005251288.1 378988124 799218..800984 1 NC_016863.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components; succinate dehydrogenase flavoprotein subunit 800984 sdhA 990282000739 sdhA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 succinate dehydrogenase flavoprotein subunit YP_005251288.1 799218 D 990282 CDS YP_005251289.1 378988125 800998..801717 1 NC_016863.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components; succinate dehydrogenase iron-sulfur subunit 801717 sdhB 990282000740 sdhB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 succinate dehydrogenase iron-sulfur subunit YP_005251289.1 800998 D 990282 CDS YP_005251290.1 378988126 802241..805042 1 NC_016863.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succin; 2-oxoglutarate dehydrogenase E1 component 805042 sucA 990282000741 sucA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-oxoglutarate dehydrogenase E1 component YP_005251290.1 802241 D 990282 CDS YP_005251291.1 378988127 805057..806265 1 NC_016863.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 806265 sucB 990282000742 sucB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dihydrolipoamide succinyltransferase YP_005251291.1 805057 D 990282 CDS YP_005251292.1 378988128 806407..807573 1 NC_016863.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 807573 sucC 990282000743 sucC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 succinyl-CoA synthetase subunit beta YP_005251292.1 806407 D 990282 CDS YP_005251293.1 378988129 807573..808442 1 NC_016863.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 808442 sucD 990282000744 sucD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 succinyl-CoA synthetase subunit alpha YP_005251293.1 807573 D 990282 CDS YP_005251294.1 378988130 810025..811593 1 NC_016863.1 similar to Escherichia coli cytochrome d terminal oxidase; polypeptide subunit I (AAC73827.1); cytochrome d terminal oxidase polypeptide subunit I 811593 cydA 990282000745 cydA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome d terminal oxidase polypeptide subunit I YP_005251294.1 810025 D 990282 CDS YP_005251295.1 378988131 811609..812748 1 NC_016863.1 similar to Escherichia coli cytochrome d terminal oxidase polypeptide subunit II (AAC73828.1); cytochrome d terminal oxidase polypeptide subunit II 812748 cydB 990282000746 cydB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome d terminal oxidase polypeptide subunit II YP_005251295.1 811609 D 990282 CDS YP_005251296.1 378988132 812763..812876 1 NC_016863.1 putative outer membrane lipoprotein 812876 ybgT 990282000747 ybgT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005251296.1 812763 D 990282 CDS YP_005251297.1 378988133 813013..813294 1 NC_016863.1 hypothetical protein 813294 ybgE 990282000748 ybgE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251297.1 813013 D 990282 CDS YP_005251298.1 378988134 813523..813927 1 NC_016863.1 catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope com; acyl-CoA thioester hydrolase YbgC 813927 ybgC 990282000749 ybgC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acyl-CoA thioester hydrolase YbgC YP_005251298.1 813523 D 990282 CDS YP_005251299.1 378988135 813924..814616 1 NC_016863.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 814616 tolQ 990282000750 tolQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 colicin uptake protein TolQ YP_005251299.1 813924 D 990282 CDS YP_005251300.1 378988136 814620..815048 1 NC_016863.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 815048 tolR 990282000751 tolR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 colicin uptake protein TolR YP_005251300.1 814620 D 990282 CDS YP_005251301.1 378988137 815113..816336 1 NC_016863.1 inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA 816336 tolA 990282000752 tolA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell envelope integrity inner membrane protein TolA YP_005251301.1 815113 D 990282 CDS YP_005251302.1 378988138 816460..817752 1 NC_016863.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 817752 tolB 990282000753 tolB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 translocation protein TolB YP_005251302.1 816460 D 990282 CDS YP_005251303.1 378988139 817787..818311 1 NC_016863.1 similar to Escherichia coli peptidoglycan-associated lipoprotein (AAC73835.1); tol protein required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm; peptidoglycan-associated outer membrane lipoprotein 818311 pal 990282000754 pal Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptidoglycan-associated outer membrane lipoprotein YP_005251303.1 817787 D 990282 CDS YP_005251304.1 378988140 818321..819109 1 NC_016863.1 periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; tol-pal system protein YbgF 819109 ybgF 990282000755 ybgF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tol-pal system protein YbgF YP_005251304.1 818321 D 990282 CDS YP_005251305.1 378988141 820575..821618 1 NC_016863.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 821618 nadA 990282000761 nadA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 quinolinate synthetase YP_005251305.1 820575 D 990282 CDS YP_005251306.1 378988142 821643..822362 1 NC_016863.1 PNUC protein (SW:PNUC_SALTY); NMN family; nucleoside/purine/pyrimidine transporter 822362 pnuC 990282000762 pnuC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nucleoside/purine/pyrimidine transporter YP_005251306.1 821643 D 990282 CDS YP_005251307.1 378988143 complement(822359..823297) 1 NC_016863.1 involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB 823297 ybgR 990282000763 ybgR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 zinc transporter ZitB YP_005251307.1 822359 R 990282 CDS YP_005251308.1 378988144 complement(823408..823794) 1 NC_016863.1 similar to Escherichia coli putative homeobox protein (AAC73840.1); hypothetical protein 823794 ybgS 990282000764 ybgS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251308.1 823408 R 990282 CDS YP_005251309.1 378988145 824114..825166 1 NC_016863.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 825166 aroG 990282000765 aroG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_005251309.1 824114 D 990282 CDS YP_005251310.1 378988146 complement(825260..825805) 1 NC_016863.1 similar to Escherichia coli fumarase B; fumarate hydratase class I; anaerobic isozyme (AAC77083.1); fumarate hydratase 825805 990282000766 STMUK_0767 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fumarate hydratase YP_005251310.1 825260 R 990282 CDS YP_005251311.1 378988147 complement(825820..826665) 1 NC_016863.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 826665 990282000767 STMUK_0768 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fumarate hydratase YP_005251311.1 825820 R 990282 CDS YP_005251312.1 378988148 826834..827685 1 NC_016863.1 similar to Escherichia coli cyn operon positive regulator (AAC73441.1); LysR family; transcriptional regulator 827685 990282000768 STMUK_0769 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator YP_005251312.1 826834 D 990282 CDS YP_005251313.1 378988149 complement(827686..828669) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC77283.1); LysR family; transcriptional regulator 828669 990282000769 STMUK_0770 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator YP_005251313.1 827686 R 990282 CDS YP_005251314.1 378988150 828913..830160 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75352.1); putative cation transporter 830160 990282000770 STMUK_0771 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cation transporter YP_005251314.1 828913 D 990282 CDS YP_005251315.1 378988151 830210..830455 1 NC_016863.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 830455 dcoC 990282000771 dcoC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 oxaloacetate decarboxylase subunit gamma YP_005251315.1 830210 D 990282 CDS YP_005251316.1 378988152 832259..833560 1 NC_016863.1 oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); putative oxalacetate decarboxylase subunit beta 833560 990282000772 STMUK_0773 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxalacetate decarboxylase subunit beta YP_005251316.1 832259 D 990282 CDS YP_005251317.1 378988153 833679..834377 1 NC_016863.1 putative cytoplasmic protein 834377 990282000773 STMUK_0774 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251317.1 833679 D 990282 CDS YP_005251318.1 378988154 834757..835836 1 NC_016863.1 similar to Escherichia coli ferric enterobactin transport (AAC73691.1); putative ABC transport protein 835836 990282000774 STMUK_0775 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transport protein YP_005251318.1 834757 D 990282 CDS YP_005251319.1 378988155 835836..836612 1 NC_016863.1 similar to Escherichia coli ATP-binding component of ferric enterobactin transport (AAC73689.1); putative ABC-type cobalamin/Fe3+-siderophore transport component 836612 990282000775 STMUK_0776 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type cobalamin/Fe3+-siderophore transport component YP_005251319.1 835836 D 990282 CDS YP_005251320.1 378988156 complement(836703..837455) 1 NC_016863.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 837455 gpmA 990282000776 gpmA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoglyceromutase YP_005251320.1 836703 R 990282 CDS YP_005251321.1 378988157 complement(837679..838719) 1 NC_016863.1 catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase 838719 galM 990282000777 galM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aldose 1-epimerase YP_005251321.1 837679 R 990282 CDS YP_005251322.1 378988158 complement(838713..839861) 1 NC_016863.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 839861 galK 990282000778 galK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 galactokinase YP_005251322.1 838713 R 990282 CDS YP_005251323.1 378988159 complement(839864..840910) 1 NC_016863.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase 840910 galT 990282000779 galT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 galactose-1-phosphate uridylyltransferase YP_005251323.1 839864 R 990282 CDS YP_005251324.1 378988160 complement(840921..841937) 1 NC_016863.1 UDP-glucose 4-epimerase (SW:GALE_SALTY); UDP-galactose-4-epimerase 841937 galE 990282000780 galE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-galactose-4-epimerase YP_005251324.1 840921 R 990282 CDS YP_005251325.1 378988161 complement(842160..843068) 1 NC_016863.1 putative inner membrane protein 843068 990282000781 STMUK_0782 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251325.1 842160 R 990282 CDS YP_005251326.1 378988162 complement(843239..844714) 1 NC_016863.1 contains 2 ATP-binding cassettes; involved in the transport of molybdenum; putative molybdenum transport ATP-binding protein ModF 844714 modF 990282000782 modF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative molybdenum transport ATP-binding protein ModF YP_005251326.1 843239 R 990282 CDS YP_005251327.1 378988163 complement(844782..845570) 1 NC_016863.1 represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE 845570 modE 990282000783 modE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator ModE YP_005251327.1 844782 R 990282 CDS YP_005251328.1 378988164 845699..845848 1 NC_016863.1 hypothetical protein 845848 990282000784 STMUK_0785 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251328.1 845699 D 990282 CDS YP_005251329.1 378988165 846015..846788 1 NC_016863.1 with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein 846788 modA 990282000785 modA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 molybdate transporter periplasmic protein YP_005251329.1 846015 D 990282 CDS YP_005251330.1 378988166 846788..847477 1 NC_016863.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 847477 chlJ 990282000786 chlJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 molybdate ABC transporter permease YP_005251330.1 846788 D 990282 CDS YP_005251331.1 378988167 847480..848538 1 NC_016863.1 Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 848538 modC 990282000787 modC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 molybdate transporter ATP-binding protein YP_005251331.1 847480 D 990282 CDS YP_005251332.1 378988168 complement(848539..849357) 1 NC_016863.1 YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monopho; phosphotransferase 849357 ybhA 990282000788 ybhA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphotransferase YP_005251332.1 848539 R 990282 CDS YP_005251333.1 378988169 849521..850516 1 NC_016863.1 catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 850516 ybhE 990282000789 ybhE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 6-phosphogluconolactonase YP_005251333.1 849521 D 990282 CDS YP_005251334.1 378988170 complement(850660..851943) 1 NC_016863.1 outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; putative pectinesterase 851943 ybhC 990282000790 ybhC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative pectinesterase YP_005251334.1 850660 R 990282 CDS YP_005251335.1 378988171 852181..853404 1 NC_016863.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 853404 hutI 990282000791 hutI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 imidazolonepropionase YP_005251335.1 852181 D 990282 CDS YP_005251336.1 378988172 853401..854342 1 NC_016863.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 854342 hutG 990282000792 hutG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formimidoylglutamase YP_005251336.1 853401 D 990282 CDS YP_005251337.1 378988173 854387..855112 1 NC_016863.1 similar to Escherichia coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); histidine utilization repressor 855112 hutC 990282000793 hutC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 histidine utilization repressor YP_005251337.1 854387 D 990282 CDS YP_005251338.1 378988174 855309..856994 1 NC_016863.1 similar to urocanate hydratase (Pid: YP_002636401.1).; hypothetical protein 856994 990282000794 STMUK_0795 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251338.1 855309 D 990282 CDS YP_005251339.1 378988175 856996..858516 1 NC_016863.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 858516 hutH 990282000795 hutH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 histidine ammonia-lyase YP_005251339.1 856996 D 990282 CDS YP_005251340.1 378988176 complement(858601..859077) 1 NC_016863.1 YbhB; similar to rat and human kinase inhibitory proteins; putative kinase inhibitor protein 859077 ybhB 990282000796 ybhB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative kinase inhibitor protein YP_005251340.1 858601 R 990282 CDS YP_005251341.1 378988177 complement(859135..860424) 1 NC_016863.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 860424 bioA 990282000797 bioA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_005251341.1 859135 R 990282 CDS YP_005251342.1 378988178 860511..861551 1 NC_016863.1 similar to Escherichia coli biotin synthesis (AAC73862.1); biotin synthetase 861551 bioB 990282000798 bioB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 biotin synthetase YP_005251342.1 860511 D 990282 CDS YP_005251343.1 378988179 861548..862705 1 NC_016863.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 862705 bioF 990282000799 bioF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 8-amino-7-oxononanoate synthase YP_005251343.1 861548 D 990282 CDS YP_005251344.1 378988180 862689..863444 1 NC_016863.1 putative methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth; biotin biosynthesis protein BioC 863444 bioC 990282000800 bioC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 biotin biosynthesis protein BioC YP_005251344.1 862689 D 990282 CDS YP_005251345.1 378988181 863437..864123 1 NC_016863.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; putative dithiobiotin synthetase 864123 bioD 990282000801 bioD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dithiobiotin synthetase YP_005251345.1 863437 D 990282 CDS YP_005251346.1 378988182 864774..866795 1 NC_016863.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 866795 uvrB 990282000802 uvrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 excinuclease ABC subunit B YP_005251346.1 864774 D 990282 CDS YP_005251347.1 378988183 867104..867277 1 NC_016863.1 putative cytoplasmic protein 867277 990282000803 STMUK_0804 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251347.1 867104 D 990282 CDS YP_005251348.1 378988184 867285..869582 1 NC_016863.1 leucine-rich repeat protein SlrP (gi|5107020); secreted by SPI-1; type III secretion; hypothetical protein 869582 slrP 990282000804 slrP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251348.1 867285 D 990282 CDS YP_005251349.1 378988185 complement(869674..870582) 1 NC_016863.1 similar to Escherichia coli putative structural protein (AAC73867.1); putative cytoplasmic protein 870582 ybhK 990282000805 ybhK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251349.1 869674 R 990282 CDS YP_005251350.1 378988186 870979..871968 1 NC_016863.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 871968 moaA 990282000806 moaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 molybdenum cofactor biosynthesis protein A YP_005251350.1 870979 D 990282 CDS YP_005251351.1 378988187 871990..872502 1 NC_016863.1 similar to Escherichia coli molybdopterin biosynthetic protein B (AAC73869.1); molybdopterin biosynthetic protein B 872502 moaB 990282000807 moaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 molybdopterin biosynthetic protein B YP_005251351.1 871990 D 990282 CDS YP_005251352.1 378988188 872505..872990 1 NC_016863.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 872990 moaC 990282000808 moaC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 molybdenum cofactor biosynthesis protein MoaC YP_005251352.1 872505 D 990282 CDS YP_005251353.1 378988189 872977..873228 1 NC_016863.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 873228 moaD 990282000809 moaD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 molybdopterin synthase small subunit YP_005251353.1 872977 D 990282 CDS YP_005251354.1 378988190 873230..873682 1 NC_016863.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin guanine dinucleotide biosynthesis protein MoaE 873682 moaE 990282000810 moaE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 molybdopterin guanine dinucleotide biosynthesis protein MoaE YP_005251354.1 873230 D 990282 CDS YP_005251355.1 378988191 873730..874434 1 NC_016863.1 putative permease 874434 ybhL 990282000811 ybhL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005251355.1 873730 D 990282 CDS YP_005251356.1 378988192 874581..875288 1 NC_016863.1 hypothetical protein 875288 ybhM 990282000812 ybhM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251356.1 874581 D 990282 CDS YP_005251357.1 378988193 875312..875920 1 NC_016863.1 putative inner membrane protein 875920 990282000813 STMUK_0814 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251357.1 875312 D 990282 CDS YP_005251358.1 378988194 875928..876488 1 NC_016863.1 putative inner membrane protein 876488 990282000814 STMUK_0815 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251358.1 875928 D 990282 CDS YP_005251359.1 378988195 complement(876491..877453) 1 NC_016863.1 hypothetical protein 877453 ybhN 990282000815 ybhN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251359.1 876491 R 990282 CDS YP_005251360.1 378988196 complement(877453..878694) 1 NC_016863.1 similar to Escherichia coli putative synthetase (AAC73876.1); CL synthase; cardiolipin synthase 2 878694 ybhO 990282000816 ybhO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cardiolipin synthase 2 YP_005251360.1 877453 R 990282 CDS YP_005251361.1 378988197 complement(878691..879449) 1 NC_016863.1 putative cytoplasmic protein 879449 ybhP 990282000817 ybhP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251361.1 878691 R 990282 CDS YP_005251362.1 378988198 879582..879992 1 NC_016863.1 putative inner membrane protein 879992 ybhQ 990282000818 ybhQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251362.1 879582 D 990282 CDS YP_005251363.1 378988199 complement(879954..881060) 1 NC_016863.1 putative ABC superfamily membrane protein; putative transport protein 881060 ybhR 990282000819 ybhR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005251363.1 879954 R 990282 CDS YP_005251364.1 378988200 complement(881176..882306) 1 NC_016863.1 putative ABC superfamily membrane protein; putative transport protein 882306 ybhS 990282000820 ybhS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005251364.1 881176 R 990282 CDS YP_005251365.1 378988201 complement(882299..884035) 1 NC_016863.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC73881.1); putative ABC-type multidrug transport system ATPase component 884035 ybhF 990282000821 ybhF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type multidrug transport system ATPase component YP_005251365.1 882299 R 990282 CDS YP_005251366.1 378988202 complement(884028..885023) 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC73882.1); predicted cation efflux pump; hypothetical protein 885023 990282000822 STMUK_0823 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251366.1 884028 R 990282 CDS YP_005251367.1 378988203 complement(885023..885697) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator (AAC73883.1); TetR/AcrR family; putative DNA-binding transcriptional regulator 885697 ybiH 990282000823 ybiH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA-binding transcriptional regulator YP_005251367.1 885023 R 990282 CDS YP_005251368.1 378988204 885927..887291 1 NC_016863.1 this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 887291 rhlE 990282000824 rhlE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent RNA helicase RhlE YP_005251368.1 885927 D 990282 CDS YP_005251369.1 378988205 887499..889643 1 NC_016863.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 889643 dinG 990282000825 dinG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent DNA helicase DinG YP_005251369.1 887499 D 990282 CDS YP_005251370.1 378988206 889673..890647 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC73887.1); glycosyl transferase family protein 890647 ybiB 990282000826 ybiB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycosyl transferase family protein YP_005251370.1 889673 D 990282 CDS YP_005251371.1 378988207 complement(890803..891063) 1 NC_016863.1 hypothetical protein 891063 ybiJ 990282000827 ybiJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251371.1 890803 R 990282 CDS YP_005251372.1 378988208 complement(891348..891614) 1 NC_016863.1 putative DnaK suppressor protein; hypothetical protein 891614 ybiI 990282000828 ybiI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251372.1 891348 R 990282 CDS YP_005251373.1 378988209 891819..892745 1 NC_016863.1 putative SAM-dependent methyltransferase 892745 ybiN 990282000829 ybiN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative SAM-dependent methyltransferase YP_005251373.1 891819 D 990282 CDS YP_005251374.1 378988210 complement(892742..894964) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC73895.1); hypothetical protein 894964 ybiO 990282000830 ybiO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251374.1 892742 R 990282 CDS YP_005251375.1 378988211 complement(895083..895805) 1 NC_016863.1 similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein 895805 glnQ 990282000831 glnQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamine ABC transporter ATP-binding protein YP_005251375.1 895083 R 990282 CDS YP_005251376.1 378988212 complement(895802..896461) 1 NC_016863.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease 896461 glnP 990282000832 glnP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamine ABC transporter permease YP_005251376.1 895802 R 990282 CDS YP_005251377.1 378988213 complement(896605..897351) 1 NC_016863.1 similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein 897351 glnH 990282000833 glnH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamine ABC transporter periplasmic protein YP_005251377.1 896605 R 990282 CDS YP_005251378.1 378988214 complement(897828..898331) 1 NC_016863.1 binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and; DNA starvation/stationary phase protection protein Dps 898331 dps 990282000834 dps Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA starvation/stationary phase protection protein Dps YP_005251378.1 897828 R 990282 CDS YP_005251379.1 378988215 complement(898634..899521) 1 NC_016863.1 hypothetical protein in dps-ompX intergenic region (SW:YBIF_SALTY); threonine and homoserine efflux system 899521 ybiF 990282000835 ybiF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 threonine and homoserine efflux system YP_005251379.1 898634 R 990282 CDS YP_005251380.1 378988216 899875..900390 1 NC_016863.1 OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X 900390 ompX 990282000836 ompX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane protein X YP_005251380.1 899875 D 990282 CDS YP_005251381.1 378988217 complement(900453..902033) 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC73902.1); hypothetical protein 902033 ybiP 990282000837 ybiP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251381.1 900453 R 990282 CDS YP_005251382.1 378988218 902199..902369 1 NC_016863.1 similar to hypothetical protein SPAB_02663 (Pid: YP_001588874.1).; hypothetical protein 902369 990282000838 STMUK_0839 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251382.1 902199 D 990282 CDS YP_005251383.1 378988219 902612..903085 1 NC_016863.1 Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 903085 990282000839 STMUK_0840 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 manganese transport regulator MntR YP_005251383.1 902612 D 990282 CDS YP_005251384.1 378988220 903082..904194 1 NC_016863.1 putative di-/tricarboxylate transporter; putative transporter 904194 ybiR 990282000840 ybiR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transporter YP_005251384.1 903082 D 990282 CDS YP_005251385.1 378988221 complement(904238..905158) 1 NC_016863.1 hypothetical protein 905158 ybiS 990282000841 ybiS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251385.1 904238 R 990282 CDS YP_005251386.1 378988222 905377..906969 1 NC_016863.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC73907.1); contains duplicated ATPase domain; putative ABC transporter ATPase component 906969 ybiT 990282000842 ybiT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter ATPase component YP_005251386.1 905377 D 990282 CDS YP_005251387.1 378988223 907578..908321 1 NC_016863.1 C-terminus is similar to N-terminus of some pyridine nucleotide transhydrogenase; putative inner membrane protein 908321 990282000843 STMUK_0844 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251387.1 907578 D 990282 CDS YP_005251388.1 378988224 complement(908350..909069) 1 NC_016863.1 would extend upstream except for stop codon; putative N-terminally truncated hydrolase; HAD superfamily; putative hydrolase 909069 ybiV2 990282000844 ybiV2 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase YP_005251388.1 908350 R 990282 CDS YP_005251389.1 378988225 complement(909274..910539) 1 NC_016863.1 putative cytoplasmic protein 910539 ybiU 990282000845 ybiU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251389.1 909274 R 990282 CDS YP_005251390.1 378988226 910801..911610 1 NC_016863.1 HAD superfamily; putative hydrolase 911610 ybiV1 990282000846 ybiV1 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase YP_005251390.1 910801 D 990282 CDS YP_005251391.1 378988227 complement(911688..914120) 1 NC_016863.1 similar to Escherichia coli putative formate acetyltransferase (AAC73910.1); putative pyruvate formate lyase 914120 pflF 990282000847 pflF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative pyruvate formate lyase YP_005251391.1 911688 R 990282 CDS YP_005251392.1 378988228 complement(914126..915025) 1 NC_016863.1 similar to Escherichia coli putative pyruvate formate-lyase 2 activating enzyme (AAC73911.1); putative pyruvate formate lyase activating enzyme 915025 pflE 990282000848 pflE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative pyruvate formate lyase activating enzyme YP_005251392.1 914126 R 990282 CDS YP_005251393.1 378988229 complement(915303..916052) 1 NC_016863.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 916052 moeB 990282000849 moeB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 molybdopterin biosynthesis protein MoeB YP_005251393.1 915303 R 990282 CDS YP_005251394.1 378988230 complement(916052..917293) 1 NC_016863.1 is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA 917293 moeA 990282000850 moeA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 molybdopterin biosynthesis protein MoeA YP_005251394.1 916052 R 990282 CDS YP_005251395.1 378988231 917490..918431 1 NC_016863.1 similar to Escherichia coli putative asparaginase (AAC73915.1); L-asparaginase 918431 ybiK 990282000851 ybiK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-asparaginase YP_005251395.1 917490 D 990282 CDS YP_005251396.1 378988232 918442..920313 1 NC_016863.1 with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione transporter ATP-binding protein 920313 yliA 990282000852 yliA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutathione transporter ATP-binding protein YP_005251396.1 918442 D 990282 CDS YP_005251397.1 378988233 920346..921884 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC73917.1); putative ABC transporter periplasmic binding protein 921884 yliB 990282000853 yliB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter periplasmic binding protein YP_005251397.1 920346 D 990282 CDS YP_005251398.1 378988234 921945..922865 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein (AAC73918.1); putative ABC transporter periplasmic binding protein 922865 yliC 990282000854 yliC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter periplasmic binding protein YP_005251398.1 921945 D 990282 CDS YP_005251399.1 378988235 922868..923779 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein (AAC73919.1); putative ABC transporter inner membrane component 923779 yliD 990282000855 yliD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter inner membrane component YP_005251399.1 922868 D 990282 CDS YP_005251400.1 378988236 complement(923870..925195) 1 NC_016863.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 925195 rimO 990282000856 rimO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S12 methylthiotransferase YP_005251400.1 923870 R 990282 CDS YP_005251401.1 378988237 925426..925809 1 NC_016863.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2; biofilm formation regulatory protein BssR 925809 yliH 990282000857 yliH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 biofilm formation regulatory protein BssR YP_005251401.1 925426 D 990282 CDS YP_005251402.1 378988238 926522..927037 1 NC_016863.1 putative cytoplasmic protein 927037 990282000858 STMUK_0859 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251402.1 926522 D 990282 CDS YP_005251403.1 378988239 926955..927809 1 NC_016863.1 similar to Escherichia coli probable flavoprotein subunit; carnitine metabolism (AAC73152.1); putative electron transfer protein beta subunit 927809 990282000859 STMUK_0860 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative electron transfer protein beta subunit YP_005251403.1 926955 D 990282 CDS YP_005251404.1 378988240 927820..928767 1 NC_016863.1 similar to Escherichia coli putative flavoprotein (AAC74768.1); putative electron transfer protein alpha subunit 928767 990282000860 STMUK_0861 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative electron transfer protein alpha subunit YP_005251404.1 927820 D 990282 CDS YP_005251405.1 378988241 928800..928997 1 NC_016863.1 similar to hypothetical protein SPC_0855 (Pid: YP_002636468.1).; hypothetical protein 928997 990282000861 STMUK_0862 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251405.1 928800 D 990282 CDS YP_005251406.1 378988242 929061..930224 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC74765.1); putative acyl-CoA dehydrogenase 930224 990282000862 STMUK_0863 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acyl-CoA dehydrogenase YP_005251406.1 929061 D 990282 CDS YP_005251407.1 378988243 930673..932358 1 NC_016863.1 similar to Escherichia coli flavoprotein; probable electron transport protein (AAC74769.1); putative dehydrogenase 932358 990282000863 STMUK_0864 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dehydrogenase YP_005251407.1 930673 D 990282 CDS YP_005251408.1 378988244 complement(932364..933254) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74667.1); LysR family; putative transcriptional regulator 933254 990282000864 STMUK_0865 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005251408.1 932364 R 990282 CDS YP_005251409.1 378988245 complement(933519..933944) 1 NC_016863.1 putative inner membrane protein 933944 990282000865 STMUK_0866 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251409.1 933519 R 990282 CDS YP_005251410.1 378988246 934291..934971 1 NC_016863.1 similar to E. coli putative dehydrogenase(AAC73924.1); Blastp hit to AAC73924.1 (371 aa); putative dehydrogenase 934971 990282000866 STMUK_0867 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dehydrogenase YP_005251410.1 934291 D 990282 CDS YP_005251411.1 378988247 complement(934968..935594) 1 NC_016863.1 similar to Escherichia coli putative transferase (AAC73925.1); putative glutathione S-transferase 935594 yliJ 990282000867 yliJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glutathione S-transferase YP_005251411.1 934968 R 990282 CDS YP_005251412.1 378988248 935838..937040 1 NC_016863.1 penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 937040 dacC 990282000868 dacC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-alanyl-D-alanine carboxypeptidase YP_005251412.1 935838 D 990282 CDS YP_005251413.1 378988249 complement(937085..937843) 1 NC_016863.1 similar to Escherichia coli transcriptional repressor for deo operon, tsx, nupG (AAC73927.1); DeoR family; DNA-binding transcriptional repressor DeoR 937843 deoR 990282000869 deoR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional repressor DeoR YP_005251413.1 937085 R 990282 CDS YP_005251414.1 378988250 complement(937915..938523) 1 NC_016863.1 undecaprenyl pyrophosphate phosphatase 938523 ybjG 990282000870 ybjG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 undecaprenyl pyrophosphate phosphatase YP_005251414.1 937915 R 990282 CDS YP_005251415.1 378988251 938836..940068 1 NC_016863.1 similar to Escherichia coli proton motive force efflux pump (AAC73929.1); multidrug translocase 940068 mdfA 990282000871 mdfA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multidrug translocase YP_005251415.1 938836 D 990282 CDS YP_005251416.1 378988252 complement(940122..940937) 1 NC_016863.1 putative hydrolase 940937 990282000872 STMUK_0873 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase YP_005251416.1 940122 R 990282 CDS YP_005251417.1 378988253 complement(940934..942145) 1 NC_016863.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC73932.1); putative transport protein/regulator 942145 990282000873 STMUK_0874 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein/regulator YP_005251417.1 940934 R 990282 CDS YP_005251418.1 378988254 942313..942933 1 NC_016863.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC73933.1); TetR/Acr family; putative regulatory protein 942933 990282000874 STMUK_0875 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005251418.1 942313 D 990282 CDS YP_005251419.1 378988255 complement(943050..944735) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC73934.1); hypothetical protein 944735 990282000875 STMUK_0876 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251419.1 943050 R 990282 CDS YP_005251420.1 378988256 945006..945383 1 NC_016863.1 putative inner membrane protein 945383 ybjM 990282000876 ybjM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251420.1 945006 D 990282 CDS YP_005251421.1 378988257 complement(945415..945678) 1 NC_016863.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 945678 grxA 990282000877 grxA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutaredoxin YP_005251421.1 945415 R 990282 CDS YP_005251422.1 378988258 945848..946138 1 NC_016863.1 YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 946138 ybjC 990282000878 ybjC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251422.1 945848 D 990282 CDS YP_005251423.1 378988259 946122..946844 1 NC_016863.1 NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 946844 mdaA 990282000879 mdaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitroreductase A YP_005251423.1 946122 D 990282 CDS YP_005251424.1 378988260 946902..947804 1 NC_016863.1 responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6 modification protein 947804 rimK 990282000880 rimK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribosomal protein S6 modification protein YP_005251424.1 946902 D 990282 CDS YP_005251425.1 378988261 947901..948377 1 NC_016863.1 similar to Escherichia coli putative sensory transduction regulator (AAC73940.1); putative cytoplasmic protein 948377 ybjN 990282000881 ybjN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251425.1 947901 D 990282 CDS YP_005251426.1 378988262 948726..949838 1 NC_016863.1 similar to Escherichia coli periplasmic putrescine-binding protein; permease protein (AAC73941.1); ABC superfamily periplasmic protein; putrescine ABC transporter periplasmic-binding protein 949838 potF 990282000882 potF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putrescine ABC transporter periplasmic-binding protein YP_005251426.1 948726 D 990282 CDS YP_005251427.1 378988263 949926..951059 1 NC_016863.1 part of the PotFGHI ATP-dependent putrescine transporter; putrescine ABC transporter ATP-binding protein 951059 potG 990282000883 potG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putrescine ABC transporter ATP-binding protein YP_005251427.1 949926 D 990282 CDS YP_005251428.1 378988264 951069..952022 1 NC_016863.1 similar to Escherichia coli putrescine transport protein; permease (AAC73943.1); ABC superfamily membrane protein; putrescine ABC transporter membrane protein 952022 potH 990282000884 potH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putrescine ABC transporter membrane protein YP_005251428.1 951069 D 990282 CDS YP_005251429.1 378988265 952019..952864 1 NC_016863.1 similar to Escherichia coli putrescine transport protein; permease (AAC73944.1); ABC superfamily membrane protein; putrescine ABC transporter membrane protein 952864 potI 990282000885 potI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putrescine ABC transporter membrane protein YP_005251429.1 952019 D 990282 CDS YP_005251430.1 378988266 952938..953411 1 NC_016863.1 putative inner membrane protein 953411 ybjO 990282000886 ybjO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251430.1 952938 D 990282 CDS YP_005251431.1 378988267 953454..954584 1 NC_016863.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 954584 rumB 990282000887 rumB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 23S rRNA methyluridine methyltransferase YP_005251431.1 953454 D 990282 CDS YP_005251432.1 378988268 954867..956210 1 NC_016863.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 956210 sgaT 990282000888 sgaT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system ascorbate-specific transporter subunit IIC YP_005251432.1 954867 D 990282 CDS YP_005251433.1 378988269 956240..956560 1 NC_016863.1 similar to SgaT from Vibrio; putative inner membrane protein 956560 990282000889 STMUK_0890 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251433.1 956240 D 990282 CDS YP_005251434.1 378988270 956570..958057 1 NC_016863.1 similar to Escherichia coli putative sulfatase (AAC76701.1); putative sulfatase 958057 990282000890 STMUK_0891 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sulfatase YP_005251434.1 956570 D 990282 CDS YP_005251435.1 378988271 complement(958276..959007) 1 NC_016863.1 similar to Escherichia coli arginine 3rd transport system periplasmic binding protein (AAC73947.1); ABC superfamily binding protein; arginine transport system component 959007 artJ 990282000891 artJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 arginine transport system component YP_005251435.1 958276 R 990282 CDS YP_005251436.1 378988272 complement(959244..959912) 1 NC_016863.1 with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 959912 artM 990282000892 artM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 arginine transporter permease subunit ArtM YP_005251436.1 959244 R 990282 CDS YP_005251437.1 378988273 complement(959912..960628) 1 NC_016863.1 with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 960628 artQ 990282000893 artQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 arginine transporter permease subunit ArtQ YP_005251437.1 959912 R 990282 CDS YP_005251438.1 378988274 complement(960635..961366) 1 NC_016863.1 similar to Escherichia coli arginine 3rd transport system periplasmic binding protein (AAC73950.1); ABC superfamily binding protein; arginine transport system 961366 artI 990282000894 artI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 arginine transport system YP_005251438.1 960635 R 990282 CDS YP_005251439.1 378988275 complement(961384..962112) 1 NC_016863.1 With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 962112 artP 990282000895 artP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 arginine transporter ATP-binding subunit YP_005251439.1 961384 R 990282 CDS YP_005251440.1 378988276 complement(962342..962857) 1 NC_016863.1 induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; putative lipoprotein 962857 ybjP 990282000896 ybjP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative lipoprotein YP_005251440.1 962342 R 990282 CDS YP_005251441.1 378988277 962985..963308 1 NC_016863.1 hypothetical protein 963308 990282000897 STMUK_0898 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251441.1 962985 D 990282 CDS YP_005251442.1 378988278 963305..964135 1 NC_016863.1 similar to Escherichia coli putative regulator (AAC73954.1); putative aminidase 964135 ybjR 990282000898 ybjR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative aminidase YP_005251442.1 963305 D 990282 CDS YP_005251443.1 378988279 complement(964132..965145) 1 NC_016863.1 similar to Escherichia coli putative nucleotide di-P-sugar epimerase or dehydratase (AAC73955.1); putative nucleoside-diphosphate-sugar epimerase 965145 990282000899 STMUK_0900 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative nucleoside-diphosphate-sugar epimerase YP_005251443.1 964132 R 990282 CDS YP_005251444.1 378988280 complement(965241..966674) 1 NC_016863.1 similar to Escherichia coli putative dTDP-glucose enzyme (AAC73956.1); putative nucleoside-diphosphate-sugar epimerase 966674 ybjT 990282000900 ybjT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative nucleoside-diphosphate-sugar epimerase YP_005251444.1 965241 R 990282 CDS YP_005251445.1 378988281 complement(966685..967686) 1 NC_016863.1 low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine; L-threonine aldolase 967686 ltaA 990282000901 ltaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-threonine aldolase YP_005251445.1 966685 R 990282 CDS YP_005251446.1 378988282 complement(967725..969443) 1 NC_016863.1 catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase 969443 poxB 990282000902 poxB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyruvate dehydrogenase YP_005251446.1 967725 R 990282 CDS YP_005251447.1 378988283 complement(969601..970572) 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC73959.1); hcp gene product; HCP oxidoreductase 970572 hcr 990282000903 hcr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 HCP oxidoreductase YP_005251447.1 969601 R 990282 CDS YP_005251448.1 378988284 complement(970581..972233) 1 NC_016863.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 972233 hcp 990282000904 hcp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydroxylamine reductase YP_005251448.1 970581 R 990282 CDS YP_005251449.1 378988285 complement(972377..973276) 1 NC_016863.1 similar to Escherichia coli putative surface protein (AAC73961.1); putative inner membrane protein 973276 ybjE 990282000905 ybjE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251449.1 972377 R 990282 CDS YP_005251450.1 378988286 973478..975136 1 NC_016863.1 similar to RecF protein; hypothetical protein 975136 ybjD 990282000906 ybjD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251450.1 973478 D 990282 CDS YP_005251451.1 378988287 complement(975133..976101) 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC73964.1); VirK-like protein 976101 ybjX 990282000907 ybjX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 VirK-like protein YP_005251451.1 975133 R 990282 CDS YP_005251452.1 378988288 976229..977347 1 NC_016863.1 confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA 977347 ybjY 990282000908 ybjY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 macrolide transporter subunit MacA YP_005251452.1 976229 D 990282 CDS YP_005251453.1 378988289 977344..979290 1 NC_016863.1 with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease 979290 ybjZ 990282000909 ybjZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 macrolide transporter ATP-binding /permease YP_005251453.1 977344 D 990282 CDS YP_005251454.1 378988290 complement(979420..979641) 1 NC_016863.1 similar to Escherichia coli cold shock protein CspA (AAC73967.1); stationary phase-induced; stress response protein 979641 cspD 990282000910 cspD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 stress response protein YP_005251454.1 979420 R 990282 CDS YP_005251455.1 378988291 979965..980285 1 NC_016863.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 980285 clpS 990282000911 clpS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent Clp protease adaptor protein ClpS YP_005251455.1 979965 D 990282 CDS YP_005251456.1 378988292 980316..982592 1 NC_016863.1 ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 982592 clpA 990282000912 clpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent Clp protease ATP-binding subunit YP_005251456.1 980316 D 990282 CDS YP_005251457.1 378988293 982784..983242 1 NC_016863.1 transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 983242 tnpA_6 990282000913 tnpA_6 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transposase for IS200 YP_005251457.1 982784 D 990282 CDS YP_005251458.1 378988294 complement(983705..984388) 1 NC_016863.1 similar to Escherichia coli IS150 putative transposase (AAC76582.1); putative integrase 984388 990282000914 STMUK_0915 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative integrase YP_005251458.1 983705 R 990282 CDS YP_005251459.1 378988295 complement(984559..984960) 1 NC_016863.1 putative cytoplasmic protein 984960 990282000915 STMUK_0916 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251459.1 984559 R 990282 CDS YP_005251460.1 378988296 complement(985298..985975) 1 NC_016863.1 similar to slsA in STM (gi|4324613); similar to STM3761; SlsA 985975 990282000917 STMUK_0918 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 SlsA YP_005251460.1 985298 R 990282 CDS YP_005251461.1 378988297 complement(985995..986855) 1 NC_016863.1 putative cytoplasmic protein 986855 990282000918 STMUK_0919 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251461.1 985995 R 990282 CDS YP_005251462.1 378988298 986964..987875 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73313.1); LysR family; putative transcriptional regulator 987875 990282000919 STMUK_0920 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005251462.1 986964 D 990282 CDS YP_005251463.1 378988299 complement(987966..988184) 1 NC_016863.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 988184 infA 990282000920 infA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 translation initiation factor IF-1 YP_005251463.1 987966 R 990282 CDS YP_005251464.1 378988300 complement(988112..988495) 1 NC_016863.1 putative inner membrane protein 988495 990282000921 STMUK_0922 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251464.1 988112 R 990282 CDS YP_005251465.1 378988301 complement(988496..989200) 1 NC_016863.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 989200 aat 990282000922 aat Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 leucyl/phenylalanyl-tRNA--protein transferase YP_005251465.1 988496 R 990282 CDS YP_005251466.1 378988302 complement(989245..990966) 1 NC_016863.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 990966 cydC 990282000923 cydC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_005251466.1 989245 R 990282 CDS YP_005251467.1 378988303 complement(990967..992733) 1 NC_016863.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 992733 cydD 990282000924 cydD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_005251467.1 990967 R 990282 CDS YP_005251468.1 378988304 complement(992847..993815) 1 NC_016863.1 catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase 993815 trxB 990282000925 trxB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thioredoxin reductase YP_005251468.1 992847 R 990282 CDS YP_005251469.1 378988305 994361..994855 1 NC_016863.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 994855 lrp 990282000926 lrp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 leucine-responsive transcriptional regulator YP_005251469.1 994361 D 990282 CDS YP_005251470.1 378988306 999215..999829 1 NC_016863.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 999829 lolA 990282000927 lolA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer-membrane lipoprotein carrier protein YP_005251470.1 999215 D 990282 CDS YP_005251471.1 378988307 999839..1001182 1 NC_016863.1 similar to Escherichia coli putative polynucleotide enzyme (AAC73978.1); recombination factor protein RarA 1001182 ycaJ 990282000928 ycaJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 recombination factor protein RarA YP_005251471.1 999839 D 990282 CDS YP_005251472.1 378988308 1001441..1002733 1 NC_016863.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1002733 serS 990282000929 serS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 seryl-tRNA synthetase YP_005251472.1 1001441 D 990282 CDS YP_005251473.1 378988309 1002970..1005414 1 NC_016863.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit A (AAC73980.1); anaerobic dimethyl sulfoxide reductase subunit A 1005414 dmsA 990282000930 dmsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anaerobic dimethyl sulfoxide reductase subunit A YP_005251473.1 1002970 D 990282 CDS YP_005251474.1 378988310 1005425..1006042 1 NC_016863.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); anaerobic dimethyl sulfoxide reductase subunit B 1006042 dmsB 990282000931 dmsB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anaerobic dimethyl sulfoxide reductase subunit B YP_005251474.1 1005425 D 990282 CDS YP_005251475.1 378988311 1006044..1006907 1 NC_016863.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit C (AAC73982.1); anaerobic dimethyl sulfoxide reductase subunit C 1006907 dmsC 990282000932 dmsC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anaerobic dimethyl sulfoxide reductase subunit C YP_005251475.1 1006044 D 990282 CDS YP_005251476.1 378988312 1007257..1008405 1 NC_016863.1 similar to Escherichia coli putative transport (AAC73984.1); MFS family; putative MFS family transporter protein 1008405 ycaD 990282000933 ycaD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative MFS family transporter protein YP_005251476.1 1007257 D 990282 CDS YP_005251477.1 378988313 1008623..1010044 1 NC_016863.1 similar to Escherichia coli putative transport (AAC73985.1); APC family; putative amino-acid transporter 1010044 ycaM 990282000934 ycaM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative amino-acid transporter YP_005251477.1 1008623 D 990282 CDS YP_005251478.1 378988314 complement(1010337..1011161) 1 NC_016863.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 1011161 pflA 990282000935 pflA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyruvate formate lyase-activating enzyme 1 YP_005251478.1 1010337 R 990282 CDS YP_005251479.1 378988315 complement(1011253..1011579) 1 NC_016863.1 putative cytoplasmic protein 1011579 990282000936 STMUK_0937 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251479.1 1011253 R 990282 CDS YP_005251480.1 378988316 1011710..1012669 1 NC_016863.1 SopD-like protein 1012669 990282000937 STMUK_0938 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 SopD-like protein YP_005251480.1 1011710 D 990282 CDS YP_005251481.1 378988317 complement(1012745..1015027) 1 NC_016863.1 similar to Escherichia coli formate acetyltransferase 1 (AAC73989.1); induced anaerobically; pyruvate formate lyase I 1015027 pflB 990282000938 pflB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyruvate formate lyase I YP_005251481.1 1012745 R 990282 CDS YP_005251482.1 378988318 complement(1015087..1015944) 1 NC_016863.1 similar to Escherichia coli probable formate transporter; formate channel 1 (AAC73990.1); FNT family; formate transporter 1015944 focA 990282000939 focA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formate transporter YP_005251482.1 1015087 R 990282 CDS YP_005251483.1 378988319 complement(1016349..1018109) 1 NC_016863.1 putative cytoplasmic protein 1018109 ycaO 990282000940 ycaO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251483.1 1016349 R 990282 CDS YP_005251484.1 378988320 1018246..1018938 1 NC_016863.1 putative inner membrane protein 1018938 ycaP 990282000941 ycaP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251484.1 1018246 D 990282 CDS YP_005251485.1 378988321 1019124..1020212 1 NC_016863.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1020212 serC 990282000942 serC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoserine aminotransferase YP_005251485.1 1019124 D 990282 CDS YP_005251486.1 378988322 1020283..1021566 1 NC_016863.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1021566 aroA 990282000943 aroA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-phosphoshikimate 1-carboxyvinyltransferase YP_005251486.1 1020283 D 990282 CDS YP_005251487.1 378988323 1021709..1022470 1 NC_016863.1 similar to Escherichia coli putative heat shock protein (AAC73995.1); has chaperone function; putative Zn-dependent protease 1022470 ycaL 990282000944 ycaL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative Zn-dependent protease YP_005251487.1 1021709 D 990282 CDS YP_005251488.1 378988324 1022643..1023326 1 NC_016863.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1023326 cmk 990282000945 cmk Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytidylate kinase YP_005251488.1 1022643 D 990282 CDS YP_005251489.1 378988325 1023440..1025113 1 NC_016863.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the; 30S ribosomal protein S1 1025113 rpsA 990282000946 rpsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S1 YP_005251489.1 1023440 D 990282 CDS YP_005251490.1 378988326 1025269..1025553 1 NC_016863.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1025553 ihfB 990282000947 ihfB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 integration host factor subunit beta YP_005251490.1 1025269 D 990282 CDS YP_005251491.1 378988327 1025783..1028047 1 NC_016863.1 hypothetical protein 1028047 ycaI 990282000948 ycaI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251491.1 1025783 D 990282 CDS YP_005251492.1 378988328 1028084..1029832 1 NC_016863.1 involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease 1029832 msbA 990282000949 msbA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipid transporter ATP-binding/permease YP_005251492.1 1028084 D 990282 CDS YP_005251493.1 378988329 1029829..1030806 1 NC_016863.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1030806 lpxK 990282000950 lpxK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tetraacyldisaccharide 4'-kinase YP_005251493.1 1029829 D 990282 CDS YP_005251494.1 378988330 1030850..1032082 1 NC_016863.1 putative cytoplasmic protein 1032082 ycaQ 990282000951 ycaQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251494.1 1030850 D 990282 CDS YP_005251495.1 378988331 1032134..1032316 1 NC_016863.1 hypothetical protein 1032316 ycaR 990282000952 ycaR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251495.1 1032134 D 990282 CDS YP_005251496.1 378988332 1032313..1033059 1 NC_016863.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1033059 kdsB 990282000953 kdsB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-deoxy-manno-octulosonate cytidylyltransferase YP_005251496.1 1032313 D 990282 CDS YP_005251497.1 378988333 1033270..1034163 1 NC_016863.1 hypothetical protein 1034163 990282000954 STMUK_0955 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251497.1 1033270 D 990282 CDS YP_005251498.1 378988334 complement(1034143..1034919) 1 NC_016863.1 hypothetical protein 1034919 ycbC 990282000955 ycbC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251498.1 1034143 R 990282 CDS YP_005251499.1 378988335 1035055..1035858 1 NC_016863.1 involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; putative metallothionein SmtA 1035858 smtA 990282000956 smtA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative metallothionein SmtA YP_005251499.1 1035055 D 990282 CDS YP_005251500.1 378988336 1035851..1037173 1 NC_016863.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1037173 mukF 990282000957 mukF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 condesin subunit F YP_005251500.1 1035851 D 990282 CDS YP_005251501.1 378988337 1037154..1037858 1 NC_016863.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1037858 mukE 990282000958 mukE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 condesin subunit E YP_005251501.1 1037154 D 990282 CDS YP_005251502.1 378988338 1037858..1042324 1 NC_016863.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations resu; cell division protein MukB 1042324 mukB 990282000959 mukB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division protein MukB YP_005251502.1 1037858 D 990282 CDS YP_005251503.1 378988339 1042669..1044510 1 NC_016863.1 similar to Escherichia coli putative amidase (AAC74011.1); hypothetical protein 1044510 ycbB 990282000960 ycbB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251503.1 1042669 D 990282 CDS YP_005251504.1 378988340 1044770..1045318 1 NC_016863.1 putative outer membrane protein 1045318 ycbK 990282000961 ycbK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005251504.1 1044770 D 990282 CDS YP_005251505.1 378988341 1045346..1045993 1 NC_016863.1 putative metallo-beta-lactamase 1045993 ycbL 990282000962 ycbL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative metallo-beta-lactamase YP_005251505.1 1045346 D 990282 CDS YP_005251506.1 378988342 complement(1046055..1047245) 1 NC_016863.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1047245 aspC 990282000963 aspC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aromatic amino acid aminotransferase YP_005251506.1 1046055 R 990282 CDS YP_005251507.1 378988343 complement(1047430..1048521) 1 NC_016863.1 outer membrane protein F precursor; porin; (SW:OMPF_SALTY); outer membrane protein F 1048521 ompF 990282000964 ompF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane protein F YP_005251507.1 1047430 R 990282 CDS YP_005251508.1 378988344 complement(1049128..1050528) 1 NC_016863.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 1050528 asnC 990282000965 asnC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator AsnC YP_005251508.1 1049128 R 990282 CDS YP_005251509.1 378988345 complement(1050729..1051190) 1 NC_016863.1 similar to Escherichia coli regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system (AAC73975.1); putative leucine response regulator 1051190 990282000966 STMUK_0967 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative leucine response regulator YP_005251509.1 1050729 R 990282 CDS YP_005251510.1 378988346 1051507..1052721 1 NC_016863.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 1052721 990282000967 STMUK_0968 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 diaminopropionate ammonia-lyase YP_005251510.1 1051507 D 990282 CDS YP_005251511.1 378988347 1052966..1054402 1 NC_016863.1 similar to Escherichia coli inner membrane transport protein (AAC73118.1); Lrp family; putative transcriptional regulator 1054402 990282000968 STMUK_0969 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005251511.1 1052966 D 990282 CDS YP_005251512.1 378988348 complement(1054480..1055682) 1 NC_016863.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1055682 pncB 990282000969 pncB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nicotinate phosphoribosyltransferase YP_005251512.1 1054480 R 990282 CDS YP_005251513.1 378988349 complement(1055877..1057169) 1 NC_016863.1 similar to Escherichia coli putative transposase (AAC74651.1); integrase 1057169 990282000970 STMUK_0971 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 integrase YP_005251513.1 1055877 R 990282 CDS YP_005251514.1 378988350 complement(1057214..1057462) 1 NC_016863.1 excisionase 1057462 990282000971 STMUK_0972 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 excisionase YP_005251514.1 1057214 R 990282 CDS YP_005251515.1 378988351 complement(1057503..1057742) 1 NC_016863.1 hypothetical protein 1057742 990282000972 STMUK_0973 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251515.1 1057503 R 990282 CDS YP_005251516.1 378988352 complement(1057785..1058942) 1 NC_016863.1 hypothetical protein AAC26069.1 (gi|7467267); hypothetical protein 1058942 990282000973 STMUK_0974 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251516.1 1057785 R 990282 CDS YP_005251517.1 378988353 complement(1058905..1061790) 1 NC_016863.1 similar to exodeoxyribonuclease VIII (gi|7467238); exodeoxyribonuclease 1061790 990282000974 STMUK_0975 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exodeoxyribonuclease YP_005251517.1 1058905 R 990282 CDS YP_005251518.1 378988354 complement(1061917..1062216) 1 NC_016863.1 hypothetical protein 1062216 990282000975 STMUK_0976 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251518.1 1061917 R 990282 CDS YP_005251519.1 378988355 complement(1062389..1062649) 1 NC_016863.1 hypothetical protein 1062649 990282000976 STMUK_0977 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251519.1 1062389 R 990282 CDS YP_005251520.1 378988356 complement(1062699..1063109) 1 NC_016863.1 probable regulatory protein (gi|7467281); regulatory protein 1063109 990282000977 STMUK_0978 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 regulatory protein YP_005251520.1 1062699 R 990282 CDS YP_005251521.1 378988357 1063434..1063808 1 NC_016863.1 probable regulatory protein (gi|7467282); regulatory protein 1063808 990282000978 STMUK_0979 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 regulatory protein YP_005251521.1 1063434 D 990282 CDS YP_005251522.1 378988358 1063893..1064876 1 NC_016863.1 probable replication protein (gi|7467283); regulatory protein 1064876 990282000979 STMUK_0980 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 regulatory protein YP_005251522.1 1063893 D 990282 CDS YP_005251523.1 378988359 1064879..1065628 1 NC_016863.1 acts to load the DnaB helicase onto the intiation site durning DNA replication; putative replication protein 1065628 990282000980 STMUK_0981 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative replication protein YP_005251523.1 1064879 D 990282 CDS YP_005251524.1 378988360 1065639..1065986 1 NC_016863.1 hypothetical protein 1065986 990282000981 STMUK_0982 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251524.1 1065639 D 990282 CDS YP_005251525.1 378988361 1065983..1066294 1 NC_016863.1 hypothetical protein 1066294 990282000982 STMUK_0983 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251525.1 1065983 D 990282 CDS YP_005251526.1 378988362 1066372..1066662 1 NC_016863.1 hypothetical protein 1066662 990282000983 STMUK_0984 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251526.1 1066372 D 990282 CDS YP_005251527.1 378988363 1066954..1067187 1 NC_016863.1 hypothetical protein 1067187 990282000984 STMUK_0985 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251527.1 1066954 D 990282 CDS YP_005251528.1 378988364 1067603..1068205 1 NC_016863.1 hypothetical protein 1068205 990282000985 STMUK_0986 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251528.1 1067603 D 990282 CDS YP_005251529.1 378988365 1068205..1068411 1 NC_016863.1 similar to hypothetical protein SPAB_02252 (Pid: YP_001588468.1).; hypothetical protein 1068411 990282000986 STMUK_0987 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251529.1 1068205 D 990282 CDS YP_005251530.1 378988366 1068414..1069025 1 NC_016863.1 hypothetical protein 1069025 990282000987 STMUK_0988 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251530.1 1068414 D 990282 CDS YP_005251531.1 378988367 1069158..1069955 1 NC_016863.1 DnaJ family; putative molecular chaperone 1069955 990282000988 STMUK_0989 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative molecular chaperone YP_005251531.1 1069158 D 990282 CDS YP_005251532.1 378988368 1070022..1070339 1 NC_016863.1 hypothetical protein 1070339 990282000989 STMUK_0990 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251532.1 1070022 D 990282 CDS YP_005251533.1 378988369 1070513..1070638 1 NC_016863.1 hypothetical protein 1070638 990282000990 STMUK_0991 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251533.1 1070513 D 990282 CDS YP_005251534.1 378988370 complement(1070774..1071223) 1 NC_016863.1 hypothetical protein 1071223 990282000991 STMUK_0992 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251534.1 1070774 R 990282 CDS YP_005251535.1 378988371 complement(1071584..1072096) 1 NC_016863.1 hypothetical protein 1072096 990282000992 STMUK_0993 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251535.1 1071584 R 990282 CDS YP_005251536.1 378988372 1072627..1072875 1 NC_016863.1 hypothetical protein 1072875 990282000993 STMUK_0994 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251536.1 1072627 D 990282 CDS YP_005251537.1 378988373 1072859..1073311 1 NC_016863.1 similar to Escherichia coli bacteriophage lambda lysozyme (AAC73656.1); lysozyme 1073311 990282000994 STMUK_0995 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lysozyme YP_005251537.1 1072859 D 990282 CDS YP_005251538.1 378988374 1073329..1073808 1 NC_016863.1 bacteriophage ES18 gp15 protein (gi|1143595); hypothetical protein 1073808 990282000995 STMUK_0996 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251538.1 1073329 D 990282 CDS YP_005251539.1 378988375 1074016..1074549 1 NC_016863.1 hypothetical protein 1074549 990282000996 STMUK_0997 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251539.1 1074016 D 990282 CDS YP_005251540.1 378988376 1074506..1076644 1 NC_016863.1 hypothetical protein 1076644 990282000997 STMUK_0998 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251540.1 1074506 D 990282 CDS YP_005251541.1 378988377 1076641..1076847 1 NC_016863.1 similar to hypothetical protein SPC_2719 (Pid: YP_002638260.1).; hypothetical protein 1076847 990282000998 STMUK_0999 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251541.1 1076641 D 990282 CDS YP_005251542.1 378988378 1077078..1078391 1 NC_016863.1 hypothetical protein 1078391 990282000999 STMUK_1000 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251542.1 1077078 D 990282 CDS YP_005251543.1 378988379 1078315..1080396 1 NC_016863.1 similar to Escherichia coli ATP-dependent proteolytic subunit of ClpA-ClpP serine protease; heat shock protein F21.5 (AAC73540.1); Clp protease-like protein 1080396 990282001000 STMUK_1001 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Clp protease-like protein YP_005251543.1 1078315 D 990282 CDS YP_005251544.1 378988380 1080487..1080810 1 NC_016863.1 putative RecA/RadA recombinase 1080810 990282001001 STMUK_1002 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative RecA/RadA recombinase YP_005251544.1 1080487 D 990282 CDS YP_005251545.1 378988381 1080803..1081102 1 NC_016863.1 ATP-binding sugar transporter-like protein 1081102 990282001002 STMUK_1003 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-binding sugar transporter-like protein YP_005251545.1 1080803 D 990282 CDS YP_005251546.1 378988382 1081083..1081649 1 NC_016863.1 minor tail protein 1081649 990282001003 STMUK_1004 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 minor tail protein YP_005251546.1 1081083 D 990282 CDS YP_005251547.1 378988383 1081646..1082047 1 NC_016863.1 minor tail protein 1082047 990282001004 STMUK_1005 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 minor tail protein YP_005251547.1 1081646 D 990282 CDS YP_005251548.1 378988384 1082059..1082808 1 NC_016863.1 major tail protein 1082808 990282001005 STMUK_1006 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 major tail protein YP_005251548.1 1082059 D 990282 CDS YP_005251549.1 378988385 1082854..1083252 1 NC_016863.1 minor tail protein 1083252 990282001006 STMUK_1007 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 minor tail protein YP_005251549.1 1082854 D 990282 CDS YP_005251550.1 378988386 1083249..1083578 1 NC_016863.1 minor tail protein 1083578 990282001007 STMUK_1008 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 minor tail protein YP_005251550.1 1083249 D 990282 CDS YP_005251551.1 378988387 1083658..1086645 1 NC_016863.1 similar to lambda phage H tail component (gi|2232364); minor tail protein 1086645 990282001008 STMUK_1009 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 minor tail protein YP_005251551.1 1083658 D 990282 CDS YP_005251552.1 378988388 1086642..1086974 1 NC_016863.1 similar to lambda phage M tail component (gi|2232363); minor tail protein 1086974 990282001009 STMUK_1010 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 minor tail protein YP_005251552.1 1086642 D 990282 CDS YP_005251553.1 378988389 1087073..1087570 1 NC_016863.1 similar to OmpX (gi|2232362); attachment/invasion protein 1087570 990282001010 STMUK_1011 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 attachment/invasion protein YP_005251553.1 1087073 D 990282 CDS YP_005251554.1 378988390 complement(1087687..1088220) 1 NC_016863.1 SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1088220 sodC 990282001011 sodC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 superoxide dismutase YP_005251554.1 1087687 R 990282 CDS YP_005251555.1 378988391 1088310..1089005 1 NC_016863.1 similar to lambda phage L tail component (gi|2232360); minor tail protein 1089005 990282001012 STMUK_1013 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 minor tail protein YP_005251555.1 1088310 D 990282 CDS YP_005251556.1 378988392 1089015..1089752 1 NC_016863.1 tail assembly protein 1089752 990282001013 STMUK_1014 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tail assembly protein YP_005251556.1 1089015 D 990282 CDS YP_005251557.1 378988393 1089650..1090354 1 NC_016863.1 tail assembly protein 1090354 990282001014 STMUK_1015 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tail assembly protein YP_005251557.1 1089650 D 990282 CDS YP_005251558.1 378988394 1090426..1093776 1 NC_016863.1 similar to phage lambda protein J; host specificity protein J 1093776 990282001015 STMUK_1016 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 host specificity protein J YP_005251558.1 1090426 D 990282 CDS YP_005251559.1 378988395 1093815..1094057 1 NC_016863.1 similar to hypothetical protein SeSA_A0709 (Pid: YP_002113672.1).; hypothetical protein 1094057 990282001016 STMUK_1017 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251559.1 1093815 D 990282 CDS YP_005251560.1 378988396 1094111..1096549 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC74454.1); tail fiber protein 1096549 990282001017 STMUK_1018 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tail fiber protein YP_005251560.1 1094111 D 990282 CDS YP_005251561.1 378988397 1096549..1097130 1 NC_016863.1 similar to tail fiber assembly protein (gi|8927433); tail fiber assembly like-protein 1097130 990282001018 STMUK_1019 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tail fiber assembly like-protein YP_005251561.1 1096549 D 990282 CDS YP_005251562.1 378988398 1097606..1098574 1 NC_016863.1 secreted effector I (gi|8927434); secreted by SPI-2; colocalizes with host polymerizing actin cytoskeleton; secreted effector protein 1098574 sseI 990282001019 sseI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secreted effector protein YP_005251562.1 1097606 D 990282 CDS YP_005251563.1 378988399 1098842..1099090 1 NC_016863.1 similar to ISSfl3 orfC,D (Pid: YP_002638239.1).; hypothetical protein 1099090 990282001020 STMUK_1021 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251563.1 1098842 D 990282 CDS YP_005251564.1 378988400 complement(1099222..1099848) 1 NC_016863.1 hypothetical protein 1099848 990282001021 STMUK_1022 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251564.1 1099222 R 990282 CDS YP_005251565.1 378988401 complement(1099917..1100216) 1 NC_016863.1 hypothetical protein 1100216 990282001022 STMUK_1023 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251565.1 1099917 R 990282 CDS YP_005251566.1 378988402 complement(1100201..1100887) 1 NC_016863.1 hypothetical protein 1100887 990282001023 STMUK_1024 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251566.1 1100201 R 990282 CDS YP_005251567.1 378988403 complement(1101158..1101349) 1 NC_016863.1 MsgA-like protein 1101349 990282001024 STMUK_1025 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 MsgA-like protein YP_005251567.1 1101158 R 990282 CDS YP_005251568.1 378988404 1101776..1104388 1 NC_016863.1 similar to Escherichia coli aminopeptidase N (AAC74018.1); aminopeptidase N 1104388 pepN 990282001025 pepN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aminopeptidase N YP_005251568.1 1101776 D 990282 CDS YP_005251569.1 378988405 1104596..1105606 1 NC_016863.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays; dihydroorotate dehydrogenase 2 1105606 pyrD 990282001026 pyrD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dihydroorotate dehydrogenase 2 YP_005251569.1 1104596 D 990282 CDS YP_005251570.1 378988406 1105772..1106314 1 NC_016863.1 putative cytoplasmic protein 1106314 ycbW 990282001027 ycbW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251570.1 1105772 D 990282 CDS YP_005251571.1 378988407 complement(1106311..1107420) 1 NC_016863.1 putative iron-sulfur protein 1107420 990282001028 STMUK_1029 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative iron-sulfur protein YP_005251571.1 1106311 R 990282 CDS YP_005251572.1 378988408 1107519..1109627 1 NC_016863.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1109627 rlmL 990282001029 rlmL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 23S rRNA m(2)G2445 methyltransferase YP_005251572.1 1107519 D 990282 CDS YP_005251573.1 378988409 1109640..1111547 1 NC_016863.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1111547 uup 990282001030 uup Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ABC transporter ATPase YP_005251573.1 1109640 D 990282 CDS YP_005251574.1 378988410 1111562..1112815 1 NC_016863.1 similar to Escherichia coli paraquat-inducible protein A (AAC74036.1); paraquat-inducible protein A 1112815 pqiA 990282001031 pqiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 paraquat-inducible protein A YP_005251574.1 1111562 D 990282 CDS YP_005251575.1 378988411 1112820..1114460 1 NC_016863.1 similar to Escherichia coli paraquat-inducible protein B (AAC74037.1); paraquat-inducible protein B 1114460 pqiB 990282001032 pqiB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 paraquat-inducible protein B YP_005251575.1 1112820 D 990282 CDS YP_005251576.1 378988412 1114457..1115020 1 NC_016863.1 putative outer membrane protein 1115020 ymbA 990282001033 ymbA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005251576.1 1114457 D 990282 CDS YP_005251577.1 378988413 1115276..1115443 1 NC_016863.1 similar to Escherichia coli ribosome modulation factor (AAC74039.1); involved in dimerization of 70S ribosomes; ribosome modulation factor 1115443 rmf 990282001034 rmf Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribosome modulation factor YP_005251577.1 1115276 D 990282 CDS YP_005251578.1 378988414 complement(1115543..1116061) 1 NC_016863.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 1116061 fabA 990282001035 fabA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-hydroxydecanoyl-ACP dehydratase YP_005251578.1 1115543 R 990282 CDS YP_005251579.1 378988415 complement(1116130..1117890) 1 NC_016863.1 similar to Escherichia coli putative ATP-dependent protease (AAC74041.1); putative protease 1117890 lonH 990282001036 lonH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative protease YP_005251579.1 1116130 R 990282 CDS YP_005251580.1 378988416 1118076..1118528 1 NC_016863.1 similar to Escherichia coli putative dehydrogenase (AAC74042.1); hypothetical protein 1118528 ycbG 990282001037 ycbG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251580.1 1118076 D 990282 CDS YP_005251581.1 378988417 complement(1118600..1119652) 1 NC_016863.1 OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-fa; outer membrane protein A 1119652 ompA 990282001038 ompA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane protein A YP_005251581.1 1118600 R 990282 CDS YP_005251582.1 378988418 complement(1120009..1120518) 1 NC_016863.1 suppressor of lon (SW:SULA_SALTY); inhibitor of cell division and FtsZ ring formation upon DNA damage/inhibition; HslVU and Lon involved in its turnover; SOS cell division inhibitor 1120518 sulA 990282001039 sulA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 SOS cell division inhibitor YP_005251582.1 1120009 R 990282 CDS YP_005251583.1 378988419 1120735..1121340 1 NC_016863.1 putative DNA transformation protein 1121340 yccR 990282001040 yccR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA transformation protein YP_005251583.1 1120735 D 990282 CDS YP_005251584.1 378988420 complement(1121327..1123480) 1 NC_016863.1 efflux PET family; putative transporter 1123480 yccS 990282001041 yccS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transporter YP_005251584.1 1121327 R 990282 CDS YP_005251585.1 378988421 complement(1123499..1123945) 1 NC_016863.1 hypothetical protein 1123945 yccF 990282001042 yccF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251585.1 1123499 R 990282 CDS YP_005251586.1 378988422 1124069..1126123 1 NC_016863.1 catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1126123 helD 990282001043 helD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA helicase IV YP_005251586.1 1124069 D 990282 CDS YP_005251587.1 378988423 complement(1126159..1126617) 1 NC_016863.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1126617 mgsA 990282001044 mgsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 methylglyoxal synthase YP_005251587.1 1126159 R 990282 CDS YP_005251588.1 378988424 complement(1126712..1127374) 1 NC_016863.1 hypothetical protein 1127374 yccT 990282001045 yccT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251588.1 1126712 R 990282 CDS YP_005251589.1 378988425 1127545..1127961 1 NC_016863.1 putative cytoplasmic protein 1127961 990282001046 STMUK_1047 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251589.1 1127545 D 990282 CDS YP_005251590.1 378988426 complement(1128006..1128323) 1 NC_016863.1 heat shock protein HspQ 1128323 yccV 990282001047 yccV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 heat shock protein HspQ YP_005251590.1 1128006 R 990282 CDS YP_005251591.1 378988427 complement(1128381..1129592) 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC74053.1); putative SAM-dependent methyltransferase 1129592 yccW 990282001048 yccW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative SAM-dependent methyltransferase YP_005251591.1 1128381 R 990282 CDS YP_005251592.1 378988428 1129807..1130355 1 NC_016863.1 putative outer membrane protein 1130355 990282001049 STMUK_1050 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005251592.1 1129807 D 990282 CDS YP_005251593.1 378988429 1130381..1131160 1 NC_016863.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC73647.1); AraC family; regulatory protein 1131160 990282001050 STMUK_1051 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 regulatory protein YP_005251593.1 1130381 D 990282 CDS YP_005251594.1 378988430 1131209..1131490 1 NC_016863.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 1131490 yccX 990282001051 yccX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acylphosphatase YP_005251594.1 1131209 D 990282 CDS YP_005251595.1 378988431 complement(1131487..1131816) 1 NC_016863.1 transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein TusE 1131816 yccK 990282001052 yccK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sulfur transfer protein TusE YP_005251595.1 1131487 R 990282 CDS YP_005251596.1 378988432 complement(1131903..1132562) 1 NC_016863.1 similar to Escherichia coli putative carrier/transport protein (AAC74056.1); TegT family; hypothetical protein 1132562 yccA 990282001053 yccA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251596.1 1131903 R 990282 CDS YP_005251597.1 378988433 complement(1133183..1133863) 1 NC_016863.1 similar to Gifsy prophage protein GtgA; GogA (STM1026); pathogenicity island-encoded protein A 1133863 pipA 990282001055 pipA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pathogenicity island-encoded protein A YP_005251597.1 1133183 R 990282 CDS YP_005251598.1 378988434 complement(1134085..1134960) 1 NC_016863.1 pathogenicity island-encoded protein B; similar to STM2780; secreted by SPI-2; type III secretion; localizes to Salmonella-containing vacuole and host cell membranes; secreted effector protein 1134960 pipB 990282001056 pipB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secreted effector protein YP_005251598.1 1134085 R 990282 CDS YP_005251599.1 378988435 1135178..1135498 1 NC_016863.1 putative inner membrane protein 1135498 990282001057 STMUK_1058 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251599.1 1135178 D 990282 CDS YP_005251600.1 378988436 complement(1135508..1135849) 1 NC_016863.1 similar to ipgE of Shigella; invasion gene E protein (gi|2582386); similar to type III secretion chaperones SigE and CesT; pathogenicity island-encoded protein C 1135849 pipC 990282001058 pipC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pathogenicity island-encoded protein C YP_005251600.1 1135508 R 990282 CDS YP_005251601.1 378988437 complement(1135866..1137551) 1 NC_016863.1 SigD; Salmonella outer protein B; similar to ipgD of Shigella; invasion gene D protein (gi|2582385); secreted by SPI-1; type III secretion; secreted effector protein 1137551 sopB 990282001059 sopB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secreted effector protein YP_005251601.1 1135866 R 990282 CDS YP_005251602.1 378988438 1137883..1138053 1 NC_016863.1 putative cytoplasmic protein 1138053 990282001060 STMUK_1061 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251602.1 1137883 D 990282 CDS YP_005251603.1 378988439 complement(1138054..1138164) 1 NC_016863.1 putative cytoplasmic protein 1138164 990282001061 STMUK_1062 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251603.1 1138054 R 990282 CDS YP_005251604.1 378988440 complement(1138273..1139742) 1 NC_016863.1 similar to dipeptidase A; pathogenicity island-encoded protein D 1139742 pipD 990282001062 pipD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pathogenicity island-encoded protein D YP_005251604.1 1138273 R 990282 CDS YP_005251605.1 378988441 complement(1139915..1141279) 1 NC_016863.1 histidine kinase; similar to Escherichia coli putative 2-component sensor protein (AAC75034.1); copper resistance protein 1141279 copS 990282001063 copS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 copper resistance protein YP_005251605.1 1139915 R 990282 CDS YP_005251606.1 378988442 complement(1141272..1142018) 1 NC_016863.1 induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistanc; transcriptional regulatory protein YedW 1142018 copR 990282001064 copR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulatory protein YedW YP_005251606.1 1141272 R 990282 CDS YP_005251607.1 378988443 1142088..1142498 1 NC_016863.1 putative periplasmic protein; hypothetical protein 1142498 990282001065 STMUK_1066 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251607.1 1142088 D 990282 CDS YP_005251608.1 378988444 complement(1142831..1143343) 1 NC_016863.1 4-hydroxyphenylacetate catabolism 1143343 hpaC 990282001066 hpaC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxyphenylacetate catabolism YP_005251608.1 1142831 R 990282 CDS YP_005251609.1 378988445 complement(1143361..1144923) 1 NC_016863.1 4-hydroxyphenylacetate catabolism 1144923 hpaB 990282001067 hpaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxyphenylacetate catabolism YP_005251609.1 1143361 R 990282 CDS YP_005251610.1 378988446 complement(1145141..1145581) 1 NC_016863.1 4-hydroxyphenylacetate catabolism 1145581 hpaR 990282001068 hpaR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxyphenylacetate catabolism YP_005251610.1 1145141 R 990282 CDS YP_005251611.1 378988447 1145856..1147145 1 NC_016863.1 similar to Escherichia coli putative isomerase (AAC74264.1); 4-hydroxyphenylacetate catabolism 1147145 hpaG 990282001069 hpaG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxyphenylacetate catabolism YP_005251611.1 1145856 D 990282 CDS YP_005251612.1 378988448 1147142..1148608 1 NC_016863.1 similar to Escherichia coli aldehyde dehydrogenase; prefers NADP over NAD (AAC74382.1); 4-hydroxyphenylacetate catabolism 1148608 hpaE 990282001070 hpaE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxyphenylacetate catabolism YP_005251612.1 1147142 D 990282 CDS YP_005251613.1 378988449 1148610..1149461 1 NC_016863.1 4-hydroxyphenylacetate catabolism 1149461 hpaD 990282001071 hpaD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxyphenylacetate catabolism YP_005251613.1 1148610 D 990282 CDS YP_005251614.1 378988450 1149471..1149851 1 NC_016863.1 4-hydroxyphenylacetate catabolism 1149851 hpaF 990282001072 hpaF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxyphenylacetate catabolism YP_005251614.1 1149471 D 990282 CDS YP_005251615.1 378988451 1149994..1150797 1 NC_016863.1 similar to Escherichia coli 2-keto-4-pentenoate hydratase (AAC73453.1); 4-hydroxyphenylacetate catabolism 1150797 hpaH 990282001073 hpaH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxyphenylacetate catabolism YP_005251615.1 1149994 D 990282 CDS YP_005251616.1 378988452 1150808..1151599 1 NC_016863.1 4-hydroxyphenylacetate catabolism 1151599 hpaI 990282001074 hpaI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxyphenylacetate catabolism YP_005251616.1 1150808 D 990282 CDS YP_005251617.1 378988453 1151671..1153047 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75306.1); 4-hydroxyphenylacetate catabolism 1153047 hpaX 990282001075 hpaX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxyphenylacetate catabolism YP_005251617.1 1151671 D 990282 CDS YP_005251618.1 378988454 1153057..1153953 1 NC_016863.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC74766.1); 4-hydroxyphenylacetate catabolism 1153953 hpaA 990282001076 hpaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxyphenylacetate catabolism YP_005251618.1 1153057 D 990282 CDS YP_005251619.1 378988455 1153967..1154905 1 NC_016863.1 hypothetical protein 1154905 990282001077 STMUK_1078 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251619.1 1153967 D 990282 CDS YP_005251620.1 378988456 complement(1155313..1155675) 1 NC_016863.1 RssC (gi|12004175); hypothetical protein 1155675 990282001078 STMUK_1079 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251620.1 1155313 R 990282 CDS YP_005251621.1 378988457 complement(1156329..1156634) 1 NC_016863.1 with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM 1156634 yccD 990282001079 yccD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chaperone-modulator protein CbpM YP_005251621.1 1156329 R 990282 CDS YP_005251622.1 378988458 complement(1156634..1157554) 1 NC_016863.1 functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock; curved DNA-binding protein CbpA 1157554 cbpA 990282001080 cbpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 curved DNA-binding protein CbpA YP_005251622.1 1156634 R 990282 CDS YP_005251623.1 378988459 1157789..1158151 1 NC_016863.1 suppressor for copper-sensitivity A (gi|2327003); putative copper binding protein; suppression of copper sensitivity protein A 1158151 scsA 990282001081 scsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 suppression of copper sensitivity protein A YP_005251623.1 1157789 D 990282 CDS YP_005251624.1 378988460 1158200..1160086 1 NC_016863.1 suppressor for copper-sensitivity B (gi|2327004); suppression of copper sensitivity; suppression of copper sensitivity protein 1160086 scsB 990282001082 scsB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 suppression of copper sensitivity protein YP_005251624.1 1158200 D 990282 CDS YP_005251625.1 378988461 1160083..1160706 1 NC_016863.1 suppressor for copper-sensitivity C (gi|2327005); suppression of copper sensitivity; suppression of copper sensitivity protein 1160706 scsC 990282001083 scsC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 suppression of copper sensitivity protein YP_005251625.1 1160083 D 990282 CDS YP_005251626.1 378988462 1160696..1161202 1 NC_016863.1 suppressor for copper-sensitivity D (gi|2327006); suppression of copper sensitivity; suppression of copper sensitivity protein 1161202 scsD 990282001084 scsD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 suppression of copper sensitivity protein YP_005251626.1 1160696 D 990282 CDS YP_005251627.1 378988463 1161335..1162576 1 NC_016863.1 glucose-1-phosphatase precursor (SW:AGP_SALTY); glucose-1-phosphatase/inositol phosphatase 1162576 agp 990282001085 agp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucose-1-phosphatase/inositol phosphatase YP_005251627.1 1161335 D 990282 CDS YP_005251628.1 378988464 complement(1162610..1162837) 1 NC_016863.1 hypothetical protein 1162837 yccJ 990282001086 yccJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251628.1 1162610 R 990282 CDS YP_005251629.1 378988465 complement(1162858..1163454) 1 NC_016863.1 stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA 1163454 wraB 990282001087 wraB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 TrpR binding protein WrbA YP_005251629.1 1162858 R 990282 CDS YP_005251630.1 378988466 1163839..1164006 1 NC_016863.1 putative cytoplasmic protein 1164006 ymdF 990282001088 ymdF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251630.1 1163839 D 990282 CDS YP_005251631.1 378988467 1164143..1164781 1 NC_016863.1 similar to Escherichia coli putative tet operon regulator (AAC74098.1); TetR/AcrR family; putative transcriptional repressor 1164781 ycdC 990282001089 ycdC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional repressor YP_005251631.1 1164143 D 990282 CDS YP_005251632.1 378988468 complement(1164778..1165173) 1 NC_016863.1 hypothetical protein 1165173 990282001090 STMUK_1091 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251632.1 1164778 R 990282 CDS YP_005251633.1 378988469 complement(1165232..1169194) 1 NC_016863.1 PUTA protein (SW:PUTA_SALTY); bifunctional inplasma membrane proline dehydrogenase andpyrroline-5-carboxylate dehydrogenase OR in cytoplasm atranscriptional repressor; plasma membranepyrroline-5-carboxylate dehydrogenase; cytoplasmictranscriptional repres; plasma membrane proline dehydrogenase 1169194 990282001091 STMUK_1092 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 plasma membrane proline dehydrogenase YP_005251633.1 1165232 R 990282 CDS YP_005251634.1 378988470 1169616..1171124 1 NC_016863.1 sodium/proline symporter proline permease (SW:PUTP_SALTY); SSS family; major sodium/proline symporter 1171124 putP 990282001092 putP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 major sodium/proline symporter YP_005251634.1 1169616 D 990282 CDS YP_005251635.1 378988471 1171951..1172805 1 NC_016863.1 similar to E. coli PhoB-dependent, ATP-binding phoregulon component; may be helicase; induced by Pstarvation (AAC74105.1); Blastp hit to AAC74105.1 (354aa); PhoB-dependent ATP-binding pho reguloncomponent 1172805 990282001093 STMUK_1094 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PhoB-dependent ATP-binding pho reguloncomponent YP_005251635.1 1171951 D 990282 CDS YP_005251636.1 378988472 complement(1172911..1173792) 1 NC_016863.1 putative transcriptional regulator 1173792 990282001094 STMUK_1095 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005251636.1 1172911 R 990282 CDS YP_005251637.1 378988473 complement(1174077..1175573) 1 NC_016863.1 similar to Escherichia coli putative cotransporter (AAC76702.1); putative sodium/glucose cotransporter 1175573 990282001095 STMUK_1096 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sodium/glucose cotransporter YP_005251637.1 1174077 R 990282 CDS YP_005251638.1 378988474 complement(1175910..1176590) 1 NC_016863.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 1176590 990282001096 STMUK_1097 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-acetylmannosamine-6-phosphate 2-epimerase YP_005251638.1 1175910 R 990282 CDS YP_005251639.1 378988475 1177096..1178256 1 NC_016863.1 N-acetylneuraminic acid mutarotase 1178256 990282001097 STMUK_1098 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-acetylneuraminic acid mutarotase YP_005251639.1 1177096 D 990282 CDS YP_005251640.1 378988476 1178302..1178994 1 NC_016863.1 putative outer membrane protein 1178994 990282001098 STMUK_1099 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005251640.1 1178302 D 990282 CDS YP_005251641.1 378988477 1179277..1180557 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC77235.1); putative sialic acid transporter 1180557 990282001099 STMUK_1100 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sialic acid transporter YP_005251641.1 1179277 D 990282 CDS YP_005251642.1 378988478 1180568..1181674 1 NC_016863.1 similar to Escherichia coli putative dehydrogenase (AAC77236.1); putative dehydrogenase 1181674 990282001100 STMUK_1101 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dehydrogenase YP_005251642.1 1180568 D 990282 CDS YP_005251643.1 378988479 1182518..1183456 1 NC_016863.1 similar to Escherichia coli putative dehydrogenase (AAC74117.1); putative oxidoreductase 1183456 ycdW 990282001102 ycdW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidoreductase YP_005251643.1 1182518 D 990282 CDS YP_005251644.1 378988480 1183541..1184278 1 NC_016863.1 similar to hydrolases of the PHP family; putative hydrolase 1184278 ycdX 990282001103 ycdX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase YP_005251644.1 1183541 D 990282 CDS YP_005251645.1 378988481 1184302..1184856 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase component (AAC74119.1); putative oxidoreductase 1184856 ycdY 990282001104 ycdY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidoreductase YP_005251645.1 1184302 D 990282 CDS YP_005251646.1 378988482 1184909..1185439 1 NC_016863.1 hypothetical protein in phoH-csgG intergenic region (SW:YCDZ_SALTY); putative inner membrane protein 1185439 ycdZ 990282001105 ycdZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251646.1 1184909 D 990282 CDS YP_005251647.1 378988483 complement(1185478..1186311) 1 NC_016863.1 curli production assembly/transport component CsgG precursor (SW:CSGG_SALTY); putative curli operon transcriptional regulator 1186311 csgG 990282001106 csgG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative curli operon transcriptional regulator YP_005251647.1 1185478 R 990282 CDS YP_005251648.1 378988484 complement(1186338..1186754) 1 NC_016863.1 nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli sec; curli assembly protein CsgF 1186754 csgF 990282001107 csgF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 curli assembly protein CsgF YP_005251648.1 1186338 R 990282 CDS YP_005251649.1 378988485 complement(1186781..1187176) 1 NC_016863.1 chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curl; curli assembly protein CsgE 1187176 csgE 990282001108 csgE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 curli assembly protein CsgE YP_005251649.1 1186781 R 990282 CDS YP_005251650.1 378988486 complement(1187181..1187831) 1 NC_016863.1 activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD 1187831 csgD 990282001109 csgD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator CsgD YP_005251650.1 1187181 R 990282 CDS YP_005251651.1 378988487 1188586..1189041 1 NC_016863.1 CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; curlin minor subunit 1189041 csgB 990282001110 csgB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 curlin minor subunit YP_005251651.1 1188586 D 990282 CDS YP_005251652.1 378988488 1189083..1189538 1 NC_016863.1 major curlin subunit precursor; fimbrin SEF17 (SW:CSGA_SALTY); coiled surface structures; cryptic; cryptic curlin major subunit 1189538 csgA 990282001111 csgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cryptic curlin major subunit YP_005251652.1 1189083 D 990282 CDS YP_005251653.1 378988489 1189600..1189926 1 NC_016863.1 involved in autoagglutination of curliated cells; not involved in production of curli fibers; putative autoagglutination protein 1189926 csgC 990282001112 csgC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative autoagglutination protein YP_005251653.1 1189600 D 990282 CDS YP_005251654.1 378988490 1190057..1190377 1 NC_016863.1 hypothetical protein in csgC-mdoG intergenic region precursor (SW:YMDA_SALTY); hypothetical protein 1190377 ymdA 990282001113 ymdA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251654.1 1190057 D 990282 CDS YP_005251655.1 378988491 1190466..1191005 1 NC_016863.1 similar to Escherichia coli putative polyprotein (AAC74129.1); putative ACR related to the C-terminal domain of histone macroH2A1; hypothetical protein 1191005 990282001114 STMUK_1115 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251655.1 1190466 D 990282 CDS YP_005251656.1 378988492 1190944..1192428 1 NC_016863.1 similar to Escherichia coli putative synthase (AAC74130.1); putative phospholipase 1192428 ymdC 990282001115 ymdC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phospholipase YP_005251656.1 1190944 D 990282 CDS YP_005251657.1 378988493 complement(1192445..1193599) 1 NC_016863.1 required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein 1193599 mdoC 990282001116 mdoC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucans biosynthesis protein YP_005251657.1 1192445 R 990282 CDS YP_005251658.1 378988494 1193871..1195406 1 NC_016863.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1195406 opgG 990282001117 opgG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucan biosynthesis protein G YP_005251658.1 1193871 D 990282 CDS YP_005251659.1 378988495 1195399..1197942 1 NC_016863.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1197942 mdoH 990282001118 mdoH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucosyltransferase MdoH YP_005251659.1 1195399 D 990282 CDS YP_005251660.1 378988496 1198016..1198243 1 NC_016863.1 hypothetical protein 1198243 yceK 990282001119 yceK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251660.1 1198016 D 990282 CDS YP_005251661.1 378988497 complement(1198244..1198618) 1 NC_016863.1 similar to Escherichia coli acidic protein; suppresses mutants lacking function of protein export (AAC74135.1); hypothetical protein 1198618 msyB 990282001120 msyB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251661.1 1198244 R 990282 CDS YP_005251662.1 378988498 complement(1198700..1199914) 1 NC_016863.1 Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG 1199914 yceE 990282001121 yceE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 drug efflux system protein MdtG YP_005251662.1 1198700 R 990282 CDS YP_005251663.1 378988499 complement(1200069..1200989) 1 NC_016863.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1200989 htrB 990282001122 htrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipid A biosynthesis lauroyl acyltransferase YP_005251663.1 1200069 R 990282 CDS YP_005251664.1 378988500 1201209..1202261 1 NC_016863.1 hypothetical protein 1202261 yceA 990282001123 yceA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251664.1 1201209 D 990282 CDS YP_005251665.1 378988501 complement(1202313..1202888) 1 NC_016863.1 hypothetical protein 1202888 yceI 990282001124 yceI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251665.1 1202313 R 990282 CDS YP_005251666.1 378988502 complement(1202885..1203457) 1 NC_016863.1 similar to Escherichia coli putative cytochrome (AAC74141.1); putative inner membrane protein 1203457 990282001125 STMUK_1126 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251666.1 1202885 R 990282 CDS YP_005251667.1 378988503 complement(1203720..1203833) 1 NC_016863.1 putative inner membrane protein 1203833 yceO 990282001126 yceO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251667.1 1203720 R 990282 CDS YP_005251668.1 378988504 complement(1203874..1204992) 1 NC_016863.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase 1204992 solA 990282001127 solA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-methyltryptophan oxidase YP_005251668.1 1203874 R 990282 CDS YP_005251669.1 378988505 complement(1205105..1205359) 1 NC_016863.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2; biofilm formation regulatory protein BssS 1205359 yceP 990282001128 yceP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 biofilm formation regulatory protein BssS YP_005251669.1 1205105 R 990282 CDS YP_005251670.1 378988506 complement(1205649..1205894) 1 NC_016863.1 similar to Escherichia coli damage-inducible protein I (AAC74145.1); inhibits UmuD processing; DNA damage-inducible protein I 1205894 dinI 990282001129 dinI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA damage-inducible protein I YP_005251670.1 1205649 R 990282 CDS YP_005251671.1 378988507 complement(1205968..1207014) 1 NC_016863.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1207014 pyrC 990282001130 pyrC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dihydroorotase YP_005251671.1 1205968 R 990282 CDS YP_005251672.1 378988508 complement(1207119..1207679) 1 NC_016863.1 hypothetical protein in pyrC 3'region (SW:YCEB_SALTY); hypothetical protein 1207679 yceB 990282001131 yceB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251672.1 1207119 R 990282 CDS YP_005251673.1 378988509 complement(1207804..1208451) 1 NC_016863.1 cofactor involved in the reduction of disulfides; glutaredoxin 1208451 grxB 990282001132 grxB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutaredoxin YP_005251673.1 1207804 R 990282 CDS YP_005251674.1 378988510 complement(1208515..1209723) 1 NC_016863.1 Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH 1209723 yceL 990282001133 yceL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multidrug resistance protein MdtH YP_005251674.1 1208515 R 990282 CDS YP_005251675.1 378988511 1209960..1210544 1 NC_016863.1 similar to Escherichia coli acetylase; acetylates N-terminal alanine of 30S ribosomal subunit protein S5 (AAC74150.1); ribosomal-protein-S5-alanine N-acetyltransferase 1210544 rimJ 990282001134 rimJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribosomal-protein-S5-alanine N-acetyltransferase YP_005251675.1 1209960 D 990282 CDS YP_005251676.1 378988512 1210580..1211227 1 NC_016863.1 hypothetical protein 1211227 yceH 990282001135 yceH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251676.1 1210580 D 990282 CDS YP_005251677.1 378988513 1211229..1212152 1 NC_016863.1 virulence factor MviM (SW:MVIM_SALTY); putative virulence protein 1212152 mviM 990282001136 mviM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative virulence protein YP_005251677.1 1211229 D 990282 CDS YP_005251678.1 378988514 1212417..1213991 1 NC_016863.1 virulence factor MviN (SW:MVIN_SALTY); putative virulence protein 1213991 mviN 990282001137 mviN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative virulence protein YP_005251678.1 1212417 D 990282 CDS YP_005251679.1 378988515 complement(1214073..1214495) 1 NC_016863.1 flagella synthesis protein FlgN (SW:FLGN_SALTY); putative FlgK/FlgL export chaperone 1214495 flgN 990282001138 flgN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative FlgK/FlgL export chaperone YP_005251679.1 1214073 R 990282 CDS YP_005251680.1 378988516 complement(1214500..1214793) 1 NC_016863.1 regulates the flagellar specific sigma28 transcription factor; anti-sigma-28 factor FlgM 1214793 flgM 990282001139 flgM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anti-sigma-28 factor FlgM YP_005251680.1 1214500 R 990282 CDS YP_005251681.1 378988517 complement(1214885..1215544) 1 NC_016863.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1215544 flgA 990282001140 flgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar basal body P-ring biosynthesis protein FlgA YP_005251681.1 1214885 R 990282 CDS YP_005251682.1 378988518 1215701..1216117 1 NC_016863.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1216117 flgB 990282001141 flgB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar basal body rod protein FlgB YP_005251682.1 1215701 D 990282 CDS YP_005251683.1 378988519 1216121..1216525 1 NC_016863.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1216525 flgC 990282001142 flgC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar basal body rod protein FlgC YP_005251683.1 1216121 D 990282 CDS YP_005251684.1 378988520 1216537..1217235 1 NC_016863.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella p; flagellar basal body rod modification protein 1217235 flgD 990282001143 flgD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar basal body rod modification protein YP_005251684.1 1216537 D 990282 CDS YP_005251685.1 378988521 1217262..1218473 1 NC_016863.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1218473 flgE 990282001144 flgE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar hook protein FlgE YP_005251685.1 1217262 D 990282 CDS YP_005251686.1 378988522 1218494..1219249 1 NC_016863.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1219249 flgF 990282001145 flgF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar basal body rod protein FlgF YP_005251686.1 1218494 D 990282 CDS YP_005251687.1 378988523 1219263..1220045 1 NC_016863.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1220045 flgG 990282001146 flgG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar basal body rod protein FlgG YP_005251687.1 1219263 D 990282 CDS YP_005251688.1 378988524 1220100..1220798 1 NC_016863.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 1220798 flgH 990282001147 flgH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar basal body L-ring protein YP_005251688.1 1220100 D 990282 CDS YP_005251689.1 378988525 1220810..1221907 1 NC_016863.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associa; flagellar basal body P-ring protein 1221907 flgI 990282001148 flgI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar basal body P-ring protein YP_005251689.1 1220810 D 990282 CDS YP_005251690.1 378988526 1221907..1222857 1 NC_016863.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1222857 flgJ 990282001149 flgJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar rod assembly protein/muramidase FlgJ YP_005251690.1 1221907 D 990282 CDS YP_005251691.1 378988527 1222922..1224583 1 NC_016863.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1224583 flgK 990282001150 flgK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar hook-associated protein FlgK YP_005251691.1 1222922 D 990282 CDS YP_005251692.1 378988528 1224598..1225551 1 NC_016863.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; flagellar hook-associated protein FlgL 1225551 flgL 990282001151 flgL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar hook-associated protein FlgL YP_005251692.1 1224598 D 990282 CDS YP_005251693.1 378988529 complement(1225808..1229011) 1 NC_016863.1 bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; ribonuclease E 1229011 rne 990282001152 rne Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonuclease E YP_005251693.1 1225808 R 990282 CDS YP_005251694.1 378988530 1229585..1230544 1 NC_016863.1 catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C 1230544 rluC 990282001153 rluC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 23S rRNA pseudouridylate synthase C YP_005251694.1 1229585 D 990282 CDS YP_005251695.1 378988531 1230700..1231443 1 NC_016863.1 putative inner membrane lipoprotein 1231443 990282001154 STMUK_1155 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane lipoprotein YP_005251695.1 1230700 D 990282 CDS YP_005251696.1 378988532 1231649..1231873 1 NC_016863.1 similar to hypothetical protein SNSL254_A1286 (Pid: YP_002040442.1).; hypothetical protein 1231873 990282001155 STMUK_1156 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251696.1 1231649 D 990282 CDS YP_005251697.1 378988533 complement(1231945..1232529) 1 NC_016863.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1232529 maf 990282001156 maf Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Maf-like protein YP_005251697.1 1231945 R 990282 CDS YP_005251698.1 378988534 1232727..1233248 1 NC_016863.1 hypothetical protein in rne-rpmF intergenic region (G30K) (SW:YCED_SALTY); hypothetical protein 1233248 yceD 990282001157 yceD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251698.1 1232727 D 990282 CDS YP_005251699.1 378988535 1233300..1233473 1 NC_016863.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1233473 rpmF 990282001158 rpmF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L32 YP_005251699.1 1233300 D 990282 CDS YP_005251700.1 378988536 1233607..1234686 1 NC_016863.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1234686 plsX 990282001159 plsX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycerol-3-phosphate acyltransferase PlsX YP_005251700.1 1233607 D 990282 CDS YP_005251701.1 378988537 1234766..1235719 1 NC_016863.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioester; 3-oxoacyl-ACP synthase 1235719 fabH 990282001160 fabH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-oxoacyl-ACP synthase YP_005251701.1 1234766 D 990282 CDS YP_005251702.1 378988538 1235735..1236664 1 NC_016863.1 malonyl coA-acyl carrier protein transacylase (SW:FABD_SALTY); acyl carrier protein S-malonyltransferase 1236664 fabD 990282001161 fabD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acyl carrier protein S-malonyltransferase YP_005251702.1 1235735 D 990282 CDS YP_005251703.1 378988539 1236677..1237411 1 NC_016863.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1237411 fabG 990282001162 fabG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-ketoacyl-ACP reductase YP_005251703.1 1236677 D 990282 CDS YP_005251704.1 378988540 1237567..1237803 1 NC_016863.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1237803 acpP 990282001163 acpP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acyl carrier protein YP_005251704.1 1237567 D 990282 CDS YP_005251705.1 378988541 1237889..1239130 1 NC_016863.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1239130 fabF 990282001164 fabF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-oxoacyl-(acyl carrier protein) synthase II YP_005251705.1 1237889 D 990282 CDS YP_005251706.1 378988542 1239254..1240063 1 NC_016863.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1240063 pabC 990282001165 pabC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-amino-4-deoxychorismate lyase YP_005251706.1 1239254 D 990282 CDS YP_005251707.1 378988543 1240066..1241088 1 NC_016863.1 similar to Escherichia coli putative thymidylate kinase (AAC74181.1); hypothetical protein 1241088 yceG 990282001166 yceG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251707.1 1240066 D 990282 CDS YP_005251708.1 378988544 1241078..1241719 1 NC_016863.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1241719 tmk 990282001167 tmk Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thymidylate kinase YP_005251708.1 1241078 D 990282 CDS YP_005251709.1 378988545 1241716..1242720 1 NC_016863.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1242720 holB 990282001168 holB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase III subunit delta' YP_005251709.1 1241716 D 990282 CDS YP_005251710.1 378988546 1242731..1243528 1 NC_016863.1 putative metallodependent hydrolase 1243528 ycfH 990282001169 ycfH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative metallodependent hydrolase YP_005251710.1 1242731 D 990282 CDS YP_005251711.1 378988547 1243823..1245256 1 NC_016863.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group t; PTS system glucose-specific transporter subunit IIBC 1245256 ptsG 990282001170 ptsG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system glucose-specific transporter subunit IIBC YP_005251711.1 1243823 D 990282 CDS YP_005251712.1 378988548 complement(1245341..1247515) 1 NC_016863.1 similar to Escherichia coli outer membrane receptor for ferric iron uptake (AAC74186.1); receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid uptake; ferric-rhodotorulic acid outer membrane transporter 1247515 fhuE 990282001171 fhuE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ferric-rhodotorulic acid outer membrane transporter YP_005251712.1 1245341 R 990282 CDS YP_005251713.1 378988549 1247857..1248216 1 NC_016863.1 purine nucleoside phosphoramidase 1248216 ycfF 990282001172 ycfF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 purine nucleoside phosphoramidase YP_005251713.1 1247857 D 990282 CDS YP_005251714.1 378988550 1248219..1248593 1 NC_016863.1 putative outer membrane lipoprotein 1248593 ycfL 990282001173 ycfL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005251714.1 1248219 D 990282 CDS YP_005251715.1 378988551 1248607..1249245 1 NC_016863.1 putative outer membrane lipoprotein 1249245 ycfM 990282001174 ycfM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005251715.1 1248607 D 990282 CDS YP_005251716.1 378988552 1249226..1250050 1 NC_016863.1 catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 1250050 thiK 990282001175 thiK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiamine kinase YP_005251716.1 1249226 D 990282 CDS YP_005251717.1 378988553 1250061..1251086 1 NC_016863.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1251086 nagZ 990282001176 nagZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 beta-hexosaminidase YP_005251717.1 1250061 D 990282 CDS YP_005251718.1 378988554 1251111..1251653 1 NC_016863.1 hypothetical protein 1251653 ycfP 990282001177 ycfP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251718.1 1251111 D 990282 CDS YP_005251719.1 378988555 1251908..1253212 1 NC_016863.1 similar to Escherichia coli respiratory NADH dehydrogenase (AAC74193.1); cupric reductase; respiratory NADH dehydrogenase 2 1253212 ndh 990282001178 ndh Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 respiratory NADH dehydrogenase 2 YP_005251719.1 1251908 D 990282 CDS YP_005251720.1 378988556 1253391..1253930 1 NC_016863.1 hypothetical protein 1253930 ycfJ 990282001179 ycfJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251720.1 1253391 D 990282 CDS YP_005251721.1 378988557 complement(1254005..1254640) 1 NC_016863.1 TetR/AcrR family; putative transcriptional repressor 1254640 ycfQ 990282001180 ycfQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional repressor YP_005251721.1 1254005 R 990282 CDS YP_005251722.1 378988558 1254882..1255139 1 NC_016863.1 putative outer membrane protein 1255139 ycfR 990282001181 ycfR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005251722.1 1254882 D 990282 CDS YP_005251723.1 378988559 complement(1255236..1256201) 1 NC_016863.1 hypothetical protein 1256201 ycfS 990282001182 ycfS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251723.1 1255236 R 990282 CDS YP_005251724.1 378988560 complement(1256349..1259795) 1 NC_016863.1 similar to Escherichia coli transcription-repair coupling factor; mutation frequency decline (AAC74198.1); results in preferential repair of transcribed DNA; transcription-repair coupling factor 1259795 mfd 990282001183 mfd Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcription-repair coupling factor YP_005251724.1 1256349 R 990282 CDS YP_005251725.1 378988561 1260022..1261332 1 NC_016863.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1261332 ycfU 990282001184 ycfU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane-specific lipoprotein transporter subunit LolC YP_005251725.1 1260022 D 990282 CDS YP_005251726.1 378988562 1261325..1262026 1 NC_016863.1 outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone; lipoprotein transporter ATP-binding subunit 1262026 lolD 990282001185 lolD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipoprotein transporter ATP-binding subunit YP_005251726.1 1261325 D 990282 CDS YP_005251727.1 378988563 1262026..1263270 1 NC_016863.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 1263270 ycfW 990282001186 ycfW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane-specific lipoprotein transporter subunit LolE YP_005251727.1 1262026 D 990282 CDS YP_005251728.1 378988564 1263299..1264210 1 NC_016863.1 catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1264210 ycfX 990282001187 ycfX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-acetyl-D-glucosamine kinase YP_005251728.1 1263299 D 990282 CDS YP_005251729.1 378988565 1264229..1265050 1 NC_016863.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1265050 cobB 990282001188 cobB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NAD-dependent deacetylase YP_005251729.1 1264229 D 990282 CDS YP_005251730.1 378988566 complement(1265132..1266178) 1 NC_016863.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter substrate-binding protein 1266178 potD 990282001189 potD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 spermidine/putrescine ABC transporter substrate-binding protein YP_005251730.1 1265132 R 990282 CDS YP_005251731.1 378988567 complement(1266203..1266982) 1 NC_016863.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein 1266982 potC 990282001190 potC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 spermidine/putrescine ABC transporter membrane protein YP_005251731.1 1266203 R 990282 CDS YP_005251732.1 378988568 complement(1267298..1268308) 1 NC_016863.1 translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isopr; secreted effector protein 1268308 sifA 990282001191 sifA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secreted effector protein YP_005251732.1 1267298 R 990282 CDS YP_005251733.1 378988569 complement(1268637..1269500) 1 NC_016863.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein 1269500 potB 990282001192 potB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 spermidine/putrescine ABC transporter membrane protein YP_005251733.1 1268637 R 990282 CDS YP_005251734.1 378988570 complement(1269484..1270620) 1 NC_016863.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase 1270620 potA 990282001193 potA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putrescine/spermidine ABC transporter ATPase YP_005251734.1 1269484 R 990282 CDS YP_005251735.1 378988571 1270871..1272100 1 NC_016863.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1272100 pepT 990282001194 pepT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptidase T YP_005251735.1 1270871 D 990282 CDS YP_005251736.1 378988572 1272311..1272769 1 NC_016863.1 transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 1272769 tnpA_6 990282001195 tnpA_6 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transposase for IS200 YP_005251736.1 1272311 D 990282 CDS YP_005251737.1 378988573 complement(1274189..1275310) 1 NC_016863.1 putative cytoplasmic protein 1275310 ycfD 990282001196 ycfD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251737.1 1274189 R 990282 CDS YP_005251738.1 378988574 complement(1275391..1276854) 1 NC_016863.1 virulence sensor protein PhoQ (SW:PHOQ_SALTY); in two-component regulatory system with PhoP; ligand is Mg+; sensor protein PhoQ 1276854 phoQ 990282001197 phoQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sensor protein PhoQ YP_005251738.1 1275391 R 990282 CDS YP_005251739.1 378988575 complement(1276854..1277528) 1 NC_016863.1 response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP 1277528 phoP 990282001198 phoP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator PhoP YP_005251739.1 1276854 R 990282 CDS YP_005251740.1 378988576 complement(1277652..1279022) 1 NC_016863.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1279022 purB 990282001199 purB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 adenylosuccinate lyase YP_005251740.1 1277652 R 990282 CDS YP_005251741.1 378988577 complement(1279026..1279673) 1 NC_016863.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 1279673 ycfC 990282001200 ycfC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251741.1 1279026 R 990282 CDS YP_005251742.1 378988578 complement(1279754..1280905) 1 NC_016863.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1280905 mnmA 990282001201 mnmA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA-specific 2-thiouridylase MnmA YP_005251742.1 1279754 R 990282 CDS YP_005251743.1 378988579 complement(1280914..1281375) 1 NC_016863.1 similar to Escherichia coli putative phosphohydrolase (AAC74218.1); putative MutT-like protein 1281375 ymfB 990282001202 ymfB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative MutT-like protein YP_005251743.1 1280914 R 990282 CDS YP_005251744.1 378988580 complement(1281387..1281716) 1 NC_016863.1 hypothetical protein 1281716 990282001203 STMUK_1204 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251744.1 1281387 R 990282 CDS YP_005251745.1 378988581 complement(1281713..1282378) 1 NC_016863.1 putative ribosomal large subunit pseudouridine synthase 1282378 ymfC 990282001204 ymfC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ribosomal large subunit pseudouridine synthase YP_005251745.1 1281713 R 990282 CDS YP_005251746.1 378988582 1282550..1283800 1 NC_016863.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1283800 icdA 990282001205 icdA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 isocitrate dehydrogenase YP_005251746.1 1282550 D 990282 CDS YP_005251747.1 378988583 1284248..1285372 1 NC_016863.1 putative cytoplasmic protein 1285372 990282001206 STMUK_1207 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251747.1 1284248 D 990282 CDS YP_005251748.1 378988584 complement(1285829..1286032) 1 NC_016863.1 similar to hypothetical protein SPAB_02132 (Pid: YP_001588348.1).; hypothetical protein 1286032 990282001207 STMUK_1208 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251748.1 1285829 R 990282 CDS YP_005251749.1 378988585 complement(1286354..1287142) 1 NC_016863.1 probable lipoprotein EnvF precursor (SW:ENVF_SALTY); putative envelope lipoprotein 1287142 envF 990282001208 envF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative envelope lipoprotein YP_005251749.1 1286354 R 990282 CDS YP_005251750.1 378988586 complement(1287631..1287870) 1 NC_016863.1 virulence protein MsgA (SW:MSGA_SALTY); reduced mouse virulence; similar to STM2231 and STM2244; macrophage survival protein 1287870 msgA 990282001209 msgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 macrophage survival protein YP_005251750.1 1287631 R 990282 CDS YP_005251751.1 378988587 complement(1288061..1288582) 1 NC_016863.1 probable lipoprotein EnvE precursor (SW:ENVE_SALTY); putative envelope protein 1288582 envE 990282001210 envE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative envelope protein YP_005251751.1 1288061 R 990282 CDS YP_005251752.1 378988588 complement(1288997..1289209) 1 NC_016863.1 cold shock-like protein CspH (SW:CSPH_SALTY); cold shock-like protein 1289209 990282001211 STMUK_1212 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cold shock-like protein YP_005251752.1 1288997 R 990282 CDS YP_005251753.1 378988589 complement(1289341..1289604) 1 NC_016863.1 (SW:PAGD_SALTY); PhoP regulated protein; virulence protein PAGD precursor 1289604 pagD 990282001212 pagD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 virulence protein PAGD precursor YP_005251753.1 1289341 R 990282 CDS YP_005251754.1 378988590 1290416..1290973 1 NC_016863.1 (SW:PAGC_SALTY); PhoP regulated; reduced macrophage survival; virulence membrane protein PAGC precursor 1290973 pagC 990282001213 pagC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 virulence membrane protein PAGC precursor YP_005251754.1 1290416 D 990282 CDS YP_005251755.1 378988591 complement(1292210..1292554) 1 NC_016863.1 PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1292554 pliC 990282001215 pliC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lysozyme inhibitor YP_005251755.1 1292210 R 990282 CDS YP_005251756.1 378988592 1293257..1293529 1 NC_016863.1 putative cytoplasmic protein 1293529 990282001216 STMUK_1217 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251756.1 1293257 D 990282 CDS YP_005251757.1 378988593 1293681..1294148 1 NC_016863.1 similar to Escherichia coli small heat shock protein (AAC76710.1); putative molecular chaperone 1294148 990282001217 STMUK_1218 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative molecular chaperone YP_005251757.1 1293681 D 990282 CDS YP_005251758.1 378988594 1294487..1295530 1 NC_016863.1 putative cytoplasmic protein 1295530 990282001218 STMUK_1219 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251758.1 1294487 D 990282 CDS YP_005251759.1 378988595 complement(1295613..1296143) 1 NC_016863.1 similar to Escherichia coli putative cytochrome (AAC75040.1); putative inner membrane protein 1296143 990282001219 STMUK_1220 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251759.1 1295613 R 990282 CDS YP_005251760.1 378988596 complement(1296292..1296606) 1 NC_016863.1 putative outer membrane lipoprotein 1296606 990282001220 STMUK_1221 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005251760.1 1296292 R 990282 CDS YP_005251761.1 378988597 1297288..1298922 1 NC_016863.1 putative substrate-binding protein (gi|2337942); putative ABC transporter periplasmic binding protein 1298922 990282001221 STMUK_1222 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter periplasmic binding protein YP_005251761.1 1297288 D 990282 CDS YP_005251762.1 378988598 1298922..1299896 1 NC_016863.1 putative transmembrane protein (gi|2337943); putative ABC transporter protein 1299896 990282001222 STMUK_1223 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter protein YP_005251762.1 1298922 D 990282 CDS YP_005251763.1 378988599 1299886..1300698 1 NC_016863.1 putative transmembrane protein (gi|2337944); putative ABC transporter protein 1300698 990282001223 STMUK_1224 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter protein YP_005251763.1 1299886 D 990282 CDS YP_005251764.1 378988600 1300692..1301489 1 NC_016863.1 putative ATPase (gi|2337945); contain duplicated ATPase domain; ABC transporter ATP-binding protein 1301489 990282001224 STMUK_1225 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ABC transporter ATP-binding protein YP_005251764.1 1300692 D 990282 CDS YP_005251765.1 378988601 1301483..1302073 1 NC_016863.1 putative ATPase (gi|2337946); contains duplicated ATPase domain; ABC transporter ATP-binding protein 1302073 990282001225 STMUK_1226 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ABC transporter ATP-binding protein YP_005251765.1 1301483 D 990282 CDS YP_005251766.1 378988602 complement(1302155..1303288) 1 NC_016863.1 putative inner membrane protein 1303288 990282001226 STMUK_1227 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251766.1 1302155 R 990282 CDS YP_005251767.1 378988603 1303482..1303808 1 NC_016863.1 putative cytoplasmic protein 1303808 990282001227 STMUK_1228 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251767.1 1303482 D 990282 CDS YP_005251768.1 378988604 1304005..1304652 1 NC_016863.1 similar to C-terminus of adhesion lipoprotein; hypothetical protein 1304652 990282001229 STMUK_1230 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251768.1 1304005 D 990282 CDS YP_005251769.1 378988605 1304761..1305549 1 NC_016863.1 streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 1305549 aadA 990282001230 aadA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aminoglycoside resistance protein YP_005251769.1 1304761 D 990282 CDS YP_005251770.1 378988606 1305694..1306287 1 NC_016863.1 contains CheY-like receiver domain and HTH DNA-binding domain; putative response regulator 1306287 990282001231 STMUK_1232 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative response regulator YP_005251770.1 1305694 D 990282 CDS YP_005251771.1 378988607 1306356..1307204 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator (AAC74246.1); putative transcriptional regulator 1307204 990282001232 STMUK_1233 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005251771.1 1306356 D 990282 CDS YP_005251772.1 378988608 complement(1307459..1307707) 1 NC_016863.1 putative cytoplasmic protein 1307707 990282001233 STMUK_1234 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251772.1 1307459 R 990282 CDS YP_005251773.1 378988609 complement(1307786..1307935) 1 NC_016863.1 putative cytoplasmic protein 1307935 990282001234 STMUK_1235 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251773.1 1307786 R 990282 CDS YP_005251774.1 378988610 1308018..1308563 1 NC_016863.1 catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1308563 990282001235 STMUK_1236 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chorismate mutase YP_005251774.1 1308018 D 990282 CDS YP_005251775.1 378988611 1308760..1309398 1 NC_016863.1 leucine export protein LeuE 1309398 yeaS 990282001236 yeaS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 leucine export protein LeuE YP_005251775.1 1308760 D 990282 CDS YP_005251776.1 378988612 1309571..1309933 1 NC_016863.1 putative cytoplasmic protein 1309933 yeaR 990282001237 yeaR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251776.1 1309571 D 990282 CDS YP_005251777.1 378988613 1309936..1310118 1 NC_016863.1 putative cytoplasmic protein 1310118 yoaG 990282001238 yoaG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251777.1 1309936 D 990282 CDS YP_005251778.1 378988614 1310348..1310989 1 NC_016863.1 putative nitric oxide reductase 1310989 990282001239 STMUK_1240 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative nitric oxide reductase YP_005251778.1 1310348 D 990282 CDS YP_005251779.1 378988615 1311304..1311552 1 NC_016863.1 hypothetical protein 1311552 yeaQ 990282001240 yeaQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251779.1 1311304 D 990282 CDS YP_005251780.1 378988616 1311985..1312236 1 NC_016863.1 putative hemolysin 1312236 yaoF 990282001241 yaoF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hemolysin YP_005251780.1 1311985 D 990282 CDS YP_005251781.1 378988617 1312305..1312616 1 NC_016863.1 hypothetical protein 1312616 990282001242 STMUK_1243 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251781.1 1312305 D 990282 CDS YP_005251782.1 378988618 complement(1312602..1312949) 1 NC_016863.1 putative cytoplasmic protein 1312949 yeaO 990282001243 yeaO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251782.1 1312602 R 990282 CDS YP_005251783.1 378988619 complement(1313068..1314252) 1 NC_016863.1 similar to Escherichia coli putative amino acid/amine transport protein (AAC74861.1); MFS family; putative amino acid/amine transport protein 1314252 yeaN 990282001244 yeaN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative amino acid/amine transport protein YP_005251783.1 1313068 R 990282 CDS YP_005251784.1 378988620 1314353..1315147 1 NC_016863.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC74860.1); AraC/XylS family; putative regulatory protein 1315147 yeaM 990282001245 yeaM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005251784.1 1314353 D 990282 CDS YP_005251785.1 378988621 complement(1315127..1315573) 1 NC_016863.1 putative inner membrane protein 1315573 yeaL 990282001246 yeaL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251785.1 1315127 R 990282 CDS YP_005251786.1 378988622 1315779..1315886 1 NC_016863.1 putative inner membrane protein 1315886 990282001247 STMUK_1248 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251786.1 1315779 D 990282 CDS YP_005251787.1 378988623 complement(1315883..1316401) 1 NC_016863.1 putative cytoplasmic protein 1316401 yeaK 990282001248 yeaK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251787.1 1315883 R 990282 CDS YP_005251788.1 378988624 complement(1316451..1317944) 1 NC_016863.1 contains diguanylate cyclase/phosphodiesterase domain 1; putative methyl-accepting chemotaxis protein 1317944 yeaJ 990282001249 yeaJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative methyl-accepting chemotaxis protein YP_005251788.1 1316451 R 990282 CDS YP_005251789.1 378988625 complement(1318585..1319871) 1 NC_016863.1 hypothetical protein 1319871 yeaH 990282001250 yeaH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251789.1 1318585 R 990282 CDS YP_005251790.1 378988626 complement(1319994..1321928) 1 NC_016863.1 putative serine protein kinase 1321928 yeaG 990282001251 yeaG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative serine protein kinase YP_005251790.1 1319994 R 990282 CDS YP_005251791.1 378988627 1322355..1323101 1 NC_016863.1 scaffolding protein for murein-synthesizing holoenzyme; MltA-interacting protein A 1323101 mipA 990282001252 mipA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 MltA-interacting protein A YP_005251791.1 1322355 D 990282 CDS YP_005251792.1 378988628 1323391..1324587 1 NC_016863.1 similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); arylsulfatase regulator 1324587 990282001253 STMUK_1254 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 arylsulfatase regulator YP_005251792.1 1323391 D 990282 CDS YP_005251793.1 378988629 1324684..1325541 1 NC_016863.1 similar to Escherichia coli putative aldehyde reductase (AAC74851.1); putative aldehyde reductase 1325541 990282001254 STMUK_1255 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative aldehyde reductase YP_005251793.1 1324684 D 990282 CDS YP_005251794.1 378988630 complement(1325640..1326524) 1 NC_016863.1 aldose 1-epimerase 1326524 yeaD 990282001255 yeaD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aldose 1-epimerase YP_005251794.1 1325640 R 990282 CDS YP_005251795.1 378988631 complement(1326859..1327854) 1 NC_016863.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 1327854 gapA 990282001256 gapA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glyceraldehyde-3-phosphate dehydrogenase YP_005251795.1 1326859 R 990282 CDS YP_005251796.1 378988632 1328166..1328609 1 NC_016863.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1328609 yeaA 990282001257 yeaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 methionine sulfoxide reductase B YP_005251796.1 1328166 D 990282 CDS YP_005251797.1 378988633 1328651..1328929 1 NC_016863.1 putative cytoplasmic protein 1328929 yeaC 990282001258 yeaC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251797.1 1328651 D 990282 CDS YP_005251798.1 378988634 complement(1329281..1329937) 1 NC_016863.1 catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase 1329937 pncA 990282001259 pncA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nicotinamidase/pyrazinamidase YP_005251798.1 1329281 R 990282 CDS YP_005251799.1 378988635 complement(1329964..1330980) 1 NC_016863.1 converts asparagine to aspartate and ammonia; asparaginase 1330980 ansA 990282001260 ansA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 asparaginase YP_005251799.1 1329964 R 990282 CDS YP_005251800.1 378988636 complement(1331076..1332932) 1 NC_016863.1 SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 1332932 sppA 990282001261 sppA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 protease 4 YP_005251800.1 1331076 R 990282 CDS YP_005251801.1 378988637 1333106..1333657 1 NC_016863.1 hypothetical protein 1333657 ydjA 990282001262 ydjA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251801.1 1333106 D 990282 CDS YP_005251802.1 378988638 1333775..1334818 1 NC_016863.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 1334818 selD 990282001263 selD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 selenophosphate synthetase YP_005251802.1 1333775 D 990282 CDS YP_005251803.1 378988639 1334823..1336772 1 NC_016863.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1336772 topB 990282001264 topB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA topoisomerase III YP_005251803.1 1334823 D 990282 CDS YP_005251804.1 378988640 complement(1336802..1338145) 1 NC_016863.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1338145 gdhA 990282001265 gdhA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamate dehydrogenase YP_005251804.1 1336802 R 990282 CDS YP_005251805.1 378988641 1338384..1338659 1 NC_016863.1 hypothetical protein 1338659 990282001266 STMUK_1267 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251805.1 1338384 D 990282 CDS YP_005251806.1 378988642 complement(1338619..1339035) 1 NC_016863.1 MutT; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 1339035 990282001267 STMUK_1268 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YP_005251806.1 1338619 R 990282 CDS YP_005251807.1 378988643 complement(1339108..1339914) 1 NC_016863.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 1339914 xthA 990282001268 xthA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exonuclease III YP_005251807.1 1339108 R 990282 CDS YP_005251808.1 378988644 1340360..1341586 1 NC_016863.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxo; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 1341586 argD 990282001269 argD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_005251808.1 1340360 D 990282 CDS YP_005251809.1 378988645 1341577..1342611 1 NC_016863.1 arginine succinyltransferase 1342611 astA 990282001270 astA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 arginine succinyltransferase YP_005251809.1 1341577 D 990282 CDS YP_005251810.1 378988646 1342608..1344086 1 NC_016863.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1344086 astD 990282001271 astD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 succinylglutamic semialdehyde dehydrogenase YP_005251810.1 1342608 D 990282 CDS YP_005251811.1 378988647 1344083..1345426 1 NC_016863.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 1345426 astB 990282001272 astB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 succinylarginine dihydrolase YP_005251811.1 1344083 D 990282 CDS YP_005251812.1 378988648 1345419..1346387 1 NC_016863.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1346387 astE 990282001273 astE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 succinylglutamate desuccinylase YP_005251812.1 1345419 D 990282 CDS YP_005251813.1 378988649 1346723..1347208 1 NC_016863.1 periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; hypothetical protein 1347208 spy 990282001274 spy Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251813.1 1346723 D 990282 CDS YP_005251814.1 378988650 complement(1347283..1348191) 1 NC_016863.1 3' incision activity; acts with UvrC; nucleotide excision repair endonuclease 1348191 990282001275 STMUK_1276 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nucleotide excision repair endonuclease YP_005251814.1 1347283 R 990282 CDS YP_005251815.1 378988651 complement(1348285..1349112) 1 NC_016863.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli; NAD synthetase 1349112 nadE 990282001276 nadE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NAD synthetase YP_005251815.1 1348285 R 990282 CDS YP_005251816.1 378988652 1349331..1349672 1 NC_016863.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 1349672 osmE 990282001277 osmE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator OsmE YP_005251816.1 1349331 D 990282 CDS YP_005251817.1 378988653 1349973..1350293 1 NC_016863.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl gr; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 1350293 celA 990282001278 celA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB YP_005251817.1 1349973 D 990282 CDS YP_005251818.1 378988654 1350376..1351734 1 NC_016863.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl gr; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 1351734 celB 990282001279 celB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC YP_005251818.1 1350376 D 990282 CDS YP_005251819.1 378988655 1351785..1352132 1 NC_016863.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 1352132 celC 990282001280 celC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA YP_005251819.1 1351785 D 990282 CDS YP_005251820.1 378988656 1352143..1352985 1 NC_016863.1 represses the celABCDF-ydjC operon involved in carbon uptake; DNA-binding transcriptional regulator ChbR 1352985 celD 990282001281 celD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator ChbR YP_005251820.1 1352143 D 990282 CDS YP_005251821.1 378988657 1353110..1354465 1 NC_016863.1 similar to Escherichia coli phospho-beta-glucosidase; cryptic (AAC74804.1); phospho-beta-glucosidase/cellobiose-6-phosphate hydrolase 1354465 celF 990282001282 celF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phospho-beta-glucosidase/cellobiose-6-phosphate hydrolase YP_005251821.1 1353110 D 990282 CDS YP_005251822.1 378988658 1354478..1355236 1 NC_016863.1 hypothetical protein 1355236 celG 990282001283 celG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251822.1 1354478 D 990282 CDS YP_005251823.1 378988659 complement(1355280..1357532) 1 NC_016863.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 1357532 katE 990282001284 katE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydroperoxidase II YP_005251823.1 1355280 R 990282 CDS YP_005251824.1 378988660 1357897..1358139 1 NC_016863.1 affects inhibition after overreplication of chromosome in dnaAcos mutants; cell division modulator 1358139 cedA 990282001285 cedA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division modulator YP_005251824.1 1357897 D 990282 CDS YP_005251825.1 378988661 complement(1358241..1359632) 1 NC_016863.1 similar to Escherichia coli part of a kinase (AAC74799.1); kinase/transporter-like protein 1359632 ydjN 990282001286 ydjN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 kinase/transporter-like protein YP_005251825.1 1358241 R 990282 CDS YP_005251826.1 378988662 complement(1359769..1360368) 1 NC_016863.1 LexA-regulated gene; hypothetical protein 1360368 ydjM 990282001287 ydjM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251826.1 1359769 R 990282 CDS YP_005251827.1 378988663 complement(1360506..1361174) 1 NC_016863.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 1361174 yniC 990282001288 yniC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-deoxyglucose-6-phosphatase YP_005251827.1 1360506 R 990282 CDS YP_005251828.1 378988664 1361323..1361859 1 NC_016863.1 putative regulatory protein 1361859 yniB 990282001289 yniB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005251828.1 1361323 D 990282 CDS YP_005251829.1 378988665 complement(1361902..1362762) 1 NC_016863.1 putative cytoplasmic protein 1362762 990282001290 STMUK_1291 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251829.1 1361902 R 990282 CDS YP_005251830.1 378988666 complement(1362869..1363159) 1 NC_016863.1 putative cytoplasmic protein 1363159 ydiZ 990282001291 ydiZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251830.1 1362869 R 990282 CDS YP_005251831.1 378988667 complement(1363256..1364188) 1 NC_016863.1 similar to Escherichia coli 6-phosphofructokinase II; suppressor of pfkA (AAC74793.1); 6-phosphofructokinase 1364188 pfkB 990282001292 pfkB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 6-phosphofructokinase YP_005251831.1 1363256 R 990282 CDS YP_005251832.1 378988668 1364477..1365235 1 NC_016863.1 salt-inducible; putative outer membrane protein 1365235 ydiY 990282001293 ydiY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005251832.1 1364477 D 990282 CDS YP_005251833.1 378988669 complement(1365284..1366243) 1 NC_016863.1 putative outer membrane protein 1366243 990282001294 STMUK_1295 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005251833.1 1365284 R 990282 CDS YP_005251834.1 378988670 1366386..1366700 1 NC_016863.1 putative inner membrane protein 1366700 990282001295 STMUK_1296 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251834.1 1366386 D 990282 CDS YP_005251835.1 378988671 1366697..1367551 1 NC_016863.1 putative DNA/RNA non-specific endonuclease 1367551 990282001296 STMUK_1297 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA/RNA non-specific endonuclease YP_005251835.1 1366697 D 990282 CDS YP_005251836.1 378988672 1367724..1367930 1 NC_016863.1 putative inner membrane protein 1367930 990282001297 STMUK_1298 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251836.1 1367724 D 990282 CDS YP_005251837.1 378988673 complement(1368253..1369476) 1 NC_016863.1 O-antigen polymerase (SW:RFC_SALTY); O-antigen polymerase 1369476 rfc 990282001298 rfc Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 O-antigen polymerase YP_005251837.1 1368253 R 990282 CDS YP_005251838.1 378988674 1370368..1372296 1 NC_016863.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to; threonyl-tRNA synthetase 1372296 thrS 990282001299 thrS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 threonyl-tRNA synthetase YP_005251838.1 1370368 D 990282 CDS YP_005251839.1 378988675 1372408..1372842 1 NC_016863.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes fo; translation initiation factor IF-3 1372842 infC 990282001300 infC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 translation initiation factor IF-3 YP_005251839.1 1372408 D 990282 CDS YP_005251840.1 378988676 1372938..1373135 1 NC_016863.1 similar to Escherichia coli 50S ribosomal subunit protein A (AAC74787.1); 50S ribosomal protein L35 1373135 rpmI 990282001301 rpmI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L35 YP_005251840.1 1372938 D 990282 CDS YP_005251841.1 378988677 1373186..1373542 1 NC_016863.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1373542 rplT 990282001302 rplT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L20 YP_005251841.1 1373186 D 990282 CDS YP_005251842.1 378988678 1373844..1374827 1 NC_016863.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium; phenylalanyl-tRNA synthetase subunit alpha 1374827 pheS 990282001303 pheS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phenylalanyl-tRNA synthetase subunit alpha YP_005251842.1 1373844 D 990282 CDS YP_005251843.1 378988679 1374843..1377230 1 NC_016863.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions; phenylalanyl-tRNA synthetase subunit beta 1377230 pheT 990282001304 pheT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phenylalanyl-tRNA synthetase subunit beta YP_005251843.1 1374843 D 990282 CDS YP_005251844.1 378988680 1377235..1377534 1 NC_016863.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1377534 ihfA 990282001305 ihfA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 integration host factor subunit alpha YP_005251844.1 1377235 D 990282 CDS YP_005251845.1 378988681 1377737..1378717 1 NC_016863.1 with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 1378717 btuC 990282001306 btuC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 vtamin B12-transporter permease YP_005251845.1 1377737 D 990282 CDS YP_005251846.1 378988682 1378809..1379360 1 NC_016863.1 similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; putative glutathione peroxidase 1379360 btuE 990282001307 btuE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glutathione peroxidase YP_005251846.1 1378809 D 990282 CDS YP_005251847.1 378988683 1379360..1380109 1 NC_016863.1 ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 1380109 btuD 990282001308 btuD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 vitamin B12-transporter ATPase YP_005251847.1 1379360 D 990282 CDS YP_005251848.1 378988684 1380186..1380650 1 NC_016863.1 similar to Escherichia coli lipoprotein (AAC74778.1); lipoprotein 1380650 nlpC 990282001309 nlpC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipoprotein YP_005251848.1 1380186 D 990282 CDS YP_005251849.1 378988685 1380964..1381677 1 NC_016863.1 putative diguanylate cyclase/phosphodiesterase domain 1; hypothetical protein 1381677 ydiV 990282001310 ydiV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251849.1 1380964 D 990282 CDS YP_005251850.1 378988686 1381739..1383181 1 NC_016863.1 hypothetical protein 1383181 ydiU 990282001311 ydiU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251850.1 1381739 D 990282 CDS YP_005251851.1 378988687 complement(1383216..1383407) 1 NC_016863.1 hypothetical protein 1383407 ydiE 990282001312 ydiE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251851.1 1383216 R 990282 CDS YP_005251852.1 378988688 complement(1383564..1384610) 1 NC_016863.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 1384610 aroH 990282001313 aroH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_005251852.1 1383564 R 990282 CDS YP_005251853.1 378988689 complement(1384766..1385599) 1 NC_016863.1 hypothetical protein 1385599 ydiA 990282001314 ydiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251853.1 1384766 R 990282 CDS YP_005251854.1 378988690 1385936..1388314 1 NC_016863.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1388314 pps 990282001315 pps Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoenolpyruvate synthase YP_005251854.1 1385936 D 990282 CDS YP_005251855.1 378988691 complement(1388356..1389996) 1 NC_016863.1 acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase 1389996 ydiD 990282001316 ydiD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 short chain acyl-CoA synthetase YP_005251855.1 1388356 R 990282 CDS YP_005251856.1 378988692 complement(1390086..1390379) 1 NC_016863.1 putative ferredoxin 1390379 ydiT 990282001317 ydiT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ferredoxin YP_005251856.1 1390086 R 990282 CDS YP_005251857.1 378988693 complement(1390376..1391662) 1 NC_016863.1 similar to Escherichia coli flavoprotein; probably electron transport (AAC74769.1); hypothetical protein 1391662 ydiS 990282001318 ydiS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251857.1 1390376 R 990282 CDS YP_005251858.1 378988694 complement(1391719..1392654) 1 NC_016863.1 May play a role in a redox process; electron transfer flavoprotein subunit YdiR 1392654 ydiR 990282001319 ydiR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 electron transfer flavoprotein subunit YdiR YP_005251858.1 1391719 R 990282 CDS YP_005251859.1 378988695 complement(1392676..1393440) 1 NC_016863.1 YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; putative electron transfer flavoprotein YdiQ 1393440 ydiQ 990282001320 ydiQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative electron transfer flavoprotein YdiQ YP_005251859.1 1392676 R 990282 CDS YP_005251860.1 378988696 1393903..1394793 1 NC_016863.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC74766.1); AraC family; putative transcriptional regulator 1394793 ydiP 990282001321 ydiP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005251860.1 1393903 D 990282 CDS YP_005251861.1 378988697 complement(1394869..1396020) 1 NC_016863.1 may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; putative acyl-CoA dehydrogenase 1396020 ydiO 990282001322 ydiO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acyl-CoA dehydrogenase YP_005251861.1 1394869 R 990282 CDS YP_005251862.1 378988698 complement(1396034..1397587) 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC74764.1); putative acetyl-CoA/acetoacetyl-CoA transferase beta subunit 1397587 ydiF 990282001323 ydiF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acetyl-CoA/acetoacetyl-CoA transferase beta subunit YP_005251862.1 1396034 R 990282 CDS YP_005251863.1 378988699 complement(1397783..1398541) 1 NC_016863.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 1398541 aroD 990282001324 aroD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-dehydroquinate dehydratase YP_005251863.1 1397783 R 990282 CDS YP_005251864.1 378988700 complement(1398586..1399452) 1 NC_016863.1 catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 1399452 aroE 990282001325 aroE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 shikimate 5-dehydrogenase YP_005251864.1 1398586 R 990282 CDS YP_005251865.1 378988701 complement(1399519..1400754) 1 NC_016863.1 similar to Escherichia coli putative amino acid/amine transport protein (AAC74761.1); MFS family; putative transport protein 1400754 ydiN 990282001326 ydiN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005251865.1 1399519 R 990282 CDS YP_005251866.1 378988702 complement(1401118..1402329) 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein (AAC74760.1); MFS family; putative transport protein 1402329 ydiM 990282001327 ydiM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005251866.1 1401118 R 990282 CDS YP_005251867.1 378988703 complement(1402470..1402829) 1 NC_016863.1 putative cytoplasmic protein 1402829 ydiL 990282001328 ydiL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251867.1 1402470 R 990282 CDS YP_005251868.1 378988704 complement(1403288..1404406) 1 NC_016863.1 YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; putative inner membrane protein 1404406 ydiK 990282001329 ydiK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251868.1 1403288 R 990282 CDS YP_005251869.1 378988705 1404671..1407727 1 NC_016863.1 similar to Escherichia coli putative oxidase (AAC74757.1); putative oxidase 1407727 ydiJ 990282001330 ydiJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidase YP_005251869.1 1404671 D 990282 CDS YP_005251870.1 378988706 1407724..1408134 1 NC_016863.1 possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein 1408134 990282001331 STMUK_1332 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251870.1 1407724 D 990282 CDS YP_005251871.1 378988707 1408194..1408421 1 NC_016863.1 putative cytoplasmic protein 1408421 ydiH 990282001332 ydiH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251871.1 1408194 D 990282 CDS YP_005251872.1 378988708 complement(1408709..1410055) 1 NC_016863.1 similar to Escherichia coli part of a kinase (AAC74799.1); putative Na+-dicarboxylate symporter 1410055 990282001333 STMUK_1334 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative Na+-dicarboxylate symporter YP_005251872.1 1408709 R 990282 CDS YP_005251873.1 378988709 1410482..1410850 1 NC_016863.1 functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; iron-sulfur cluster assembly scaffold protein 1410850 sufA 990282001334 sufA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 iron-sulfur cluster assembly scaffold protein YP_005251873.1 1410482 D 990282 CDS YP_005251874.1 378988710 1410859..1412346 1 NC_016863.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1412346 sufB 990282001335 sufB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cysteine desulfurase activator complex subunit SufB YP_005251874.1 1410859 D 990282 CDS YP_005251875.1 378988711 1412363..1413109 1 NC_016863.1 part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase 1413109 sufC 990282001336 sufC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cysteine desulfurase YP_005251875.1 1412363 D 990282 CDS YP_005251876.1 378988712 1413084..1414355 1 NC_016863.1 with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 1414355 sufD 990282001337 sufD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cysteine desulfurase activator complex subunit SufD YP_005251876.1 1413084 D 990282 CDS YP_005251877.1 378988713 1414352..1415572 1 NC_016863.1 catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 1415572 sufS 990282001338 sufS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional cysteine desulfurase/selenocysteine lyase YP_005251877.1 1414352 D 990282 CDS YP_005251878.1 378988714 1415585..1416001 1 NC_016863.1 Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1416001 ynhA 990282001339 ynhA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cysteine desufuration protein SufE YP_005251878.1 1415585 D 990282 CDS YP_005251879.1 378988715 1416156..1417157 1 NC_016863.1 contains putative LysM domain; hypothetical protein 1417157 ynhG 990282001340 ynhG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251879.1 1416156 D 990282 CDS YP_005251880.1 378988716 complement(1417224..1417463) 1 NC_016863.1 similar to Escherichia coli murein lipoprotein (AAC74747.1); putative methyl-accepting chemotaxis protein 1417463 lppB 990282001341 lppB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative methyl-accepting chemotaxis protein YP_005251880.1 1417224 R 990282 CDS YP_005251881.1 378988717 complement(1417546..1417782) 1 NC_016863.1 similar to Escherichia coli murein lipoprotein (AAC74747.1); murein lipoprotein 1417782 lpp 990282001342 lpp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 murein lipoprotein YP_005251881.1 1417546 R 990282 CDS YP_005251882.1 378988718 complement(1418093..1419505) 1 NC_016863.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1419505 pykF 990282001343 pykF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyruvate kinase YP_005251882.1 1418093 R 990282 CDS YP_005251883.1 378988719 complement(1419907..1421250) 1 NC_016863.1 amino acid permease YeeF-like protein (gi|1526981); putative amino acid permease 1421250 990282001344 STMUK_1345 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative amino acid permease YP_005251883.1 1419907 R 990282 CDS YP_005251884.1 378988720 complement(1421272..1422165) 1 NC_016863.1 hydrolase or acyltransferase (gi|1526980); putative proline iminopeptidase 1422165 990282001345 STMUK_1346 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative proline iminopeptidase YP_005251884.1 1421272 R 990282 CDS YP_005251885.1 378988721 complement(1422224..1422961) 1 NC_016863.1 ORF 245 (gi|4456875); similar to STM3548; putative cytoplasmic protein 1422961 990282001346 STMUK_1347 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251885.1 1422224 R 990282 CDS YP_005251886.1 378988722 complement(1422973..1424199) 1 NC_016863.1 ORF 408 (gi|4456874); DeoR family; putative regulatory protein 1424199 990282001347 STMUK_1348 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005251886.1 1422973 R 990282 CDS YP_005251887.1 378988723 complement(1424522..1427584) 1 NC_016863.1 tetrathionate reductase subunit A; TtrA (gi|4456873); tetrathionate reductase complex subunit A 1427584 ttrA 990282001348 ttrA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tetrathionate reductase complex subunit A YP_005251887.1 1424522 R 990282 CDS YP_005251888.1 378988724 complement(1427577..1428599) 1 NC_016863.1 tetrathionate reductase subunit C; TtrC (gi|4456872); tetrathionate reductase complex subunit C 1428599 ttrC 990282001349 ttrC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tetrathionate reductase complex subunit C YP_005251888.1 1427577 R 990282 CDS YP_005251889.1 378988725 complement(1428600..1429352) 1 NC_016863.1 tetrathionate reductase subunit B; TtrB (gi|4456871); tetrathionate reductase complex subunit B 1429352 ttrB 990282001350 ttrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tetrathionate reductase complex subunit B YP_005251889.1 1428600 R 990282 CDS YP_005251890.1 378988726 1429516..1431294 1 NC_016863.1 tetrathionate reductase complex; TtrS (gi|4456870); two-component regulatory system; sensory histidine kinase 1431294 ttrS 990282001351 ttrS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sensory histidine kinase YP_005251890.1 1429516 D 990282 CDS YP_005251891.1 378988727 1431269..1431889 1 NC_016863.1 tetrathionate reductase complex; TtrR (gi|4456869); two-component regulatory system; response regulator 1431889 ttrR 990282001352 ttrR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 response regulator YP_005251891.1 1431269 D 990282 CDS YP_005251892.1 378988728 1431987..1432199 1 NC_016863.1 hypothetical 7.9 kDa protein in ssrB-ttRr intergenic region (ORF70) (SW:YDHZ_SALTY); hypothetical protein 1432199 990282001353 STMUK_1354 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251892.1 1431987 D 990282 CDS YP_005251893.1 378988729 complement(1432295..1433254) 1 NC_016863.1 ORF 319 (gi|4456867); putative inner membrane protein 1433254 990282001354 STMUK_1355 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251893.1 1432295 R 990282 CDS YP_005251894.1 378988730 complement(1433427..1434155) 1 NC_016863.1 ORF 242 (gi|4456866); merR family; putative regulatory protein 1434155 990282001355 STMUK_1356 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005251894.1 1433427 R 990282 CDS YP_005251895.1 378988731 complement(1434334..1434972) 1 NC_016863.1 SsrB (gi|2765824); type III secretion system regulator; similar to DegU/UvrY/BvgA; regulated by OmpR-EnvZ; controls regulation of SPI-2 expression; transcriptional activator 1434972 ssrB 990282001356 ssrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional activator YP_005251895.1 1434334 R 990282 CDS YP_005251896.1 378988732 complement(1435003..1437765) 1 NC_016863.1 SpiR (gi|1498305); type III secretion system regulator; regulated by OmpR-EnvZ; sensor kinase 1437765 ssrA 990282001357 ssrA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sensor kinase YP_005251896.1 1435003 R 990282 CDS YP_005251897.1 378988733 1438166..1438567 1 NC_016863.1 Salmonella typhimurium SpiC (gi|1498306); effects secretion of other SPI-2 proteins; interacts with host cell TassC and Hook3 proteins; type III secretion; prevents fusion of endosome/lysosome with Salmonella-containing vacuoles; secreted effector protein 1438567 ssaB 990282001358 ssaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secreted effector protein YP_005251897.1 1438166 D 990282 CDS YP_005251898.1 378988734 1438569..1440062 1 NC_016863.1 SpiA (gi|1498307); type III secretion system apparatus; outer membrane secretin precursor 1440062 ssaC 990282001359 ssaC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane secretin precursor YP_005251898.1 1438569 D 990282 CDS YP_005251899.1 378988735 1440043..1441254 1 NC_016863.1 SpiB (gi|1498308); type III secretion system; virulence protein 1441254 ssaD 990282001360 ssaD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 virulence protein YP_005251899.1 1440043 D 990282 CDS YP_005251900.1 378988736 1441262..1441504 1 NC_016863.1 putative secretory apparatus component (gi|3377860); secretion system effector 1441504 ssaE 990282001361 ssaE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secretion system effector YP_005251900.1 1441262 D 990282 CDS YP_005251901.1 378988737 1441768..1442094 1 NC_016863.1 catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 1442094 sseA 990282001362 sseA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-mercaptopyruvate sulfurtransferase YP_005251901.1 1441768 D 990282 CDS YP_005251902.1 378988738 1442101..1442691 1 NC_016863.1 enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB 1442691 sseB 990282001363 sseB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 enhanced serine sensitivity protein SseB YP_005251902.1 1442101 D 990282 CDS YP_005251903.1 378988739 1442688..1443161 1 NC_016863.1 putative secretion chaperone (gi|3377863); secretion system chaperone 1443161 sscA 990282001364 sscA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secretion system chaperone YP_005251903.1 1442688 D 990282 CDS YP_005251904.1 378988740 1443164..1444618 1 NC_016863.1 SseC (gi|3377864); translocation machinery component 1444618 sseC 990282001365 sseC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 translocation machinery component YP_005251904.1 1443164 D 990282 CDS YP_005251905.1 378988741 1444634..1445221 1 NC_016863.1 SseD (gi|3776122); translocation machinery component 1445221 sseD 990282001366 sseD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 translocation machinery component YP_005251905.1 1444634 D 990282 CDS YP_005251906.1 378988742 1445224..1445640 1 NC_016863.1 SseE (gi|3377866); secreted effector protein 1445640 sseE 990282001367 sseE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secreted effector protein YP_005251906.1 1445224 D 990282 CDS YP_005251907.1 378988743 1445692..1446126 1 NC_016863.1 SscB (gi|3377867); secretion system chaperone 1446126 sscB 990282001368 sscB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secretion system chaperone YP_005251907.1 1445692 D 990282 CDS YP_005251908.1 378988744 1446142..1446924 1 NC_016863.1 SseF (gi|3377868); secreted effector protein 1446924 sseF 990282001369 sseF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secreted effector protein YP_005251908.1 1446142 D 990282 CDS YP_005251909.1 378988745 1446921..1447610 1 NC_016863.1 SseG (gi|3377858); secreted effector protein 1447610 sseG 990282001370 sseG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secreted effector protein YP_005251909.1 1446921 D 990282 CDS YP_005251910.1 378988746 1447704..1447919 1 NC_016863.1 SsaH (gi|2460267); type III secretion system apparatus protein 1447919 ssaG 990282001371 ssaG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type III secretion system apparatus protein YP_005251910.1 1447704 D 990282 CDS YP_005251911.1 378988747 1447960..1448187 1 NC_016863.1 SsaH (gi|3776128); type III secretion system apparatus protein 1448187 ssaH 990282001372 ssaH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type III secretion system apparatus protein YP_005251911.1 1447960 D 990282 CDS YP_005251912.1 378988748 1448199..1448447 1 NC_016863.1 SsaI (gi|3776129); type III secretion system apparatus protein 1448447 ssaI 990282001373 ssaI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type III secretion system apparatus protein YP_005251912.1 1448199 D 990282 CDS YP_005251913.1 378988749 1448444..1449193 1 NC_016863.1 similar to yscJ/mxiJ/prgK family of lipoproteins; secretion system apparatus lipoprotein SsaJ precursor (SW:SSAJ_SALTY); needle complex inner membrane lipoprotein 1449193 ssaJ 990282001374 ssaJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 needle complex inner membrane lipoprotein YP_005251913.1 1448444 D 990282 CDS YP_005251914.1 378988750 1449211..1449759 1 NC_016863.1 putative cytoplasmic protein 1449759 990282001375 STMUK_1376 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005251914.1 1449211 D 990282 CDS YP_005251915.1 378988751 1449756..1450430 1 NC_016863.1 secretion system apparatus protein SsaK (SW:SSAK_SALTY); type III secretion system apparatus protein 1450430 ssaK 990282001376 ssaK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type III secretion system apparatus protein YP_005251915.1 1449756 D 990282 CDS YP_005251916.1 378988752 1450396..1451412 1 NC_016863.1 secretion system apparatus protein SsaL (SW:SSAL_SALTY); type III secretion system apparatus protein 1451412 ssaL 990282001377 ssaL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type III secretion system apparatus protein YP_005251916.1 1450396 D 990282 CDS YP_005251917.1 378988753 1451470..1451838 1 NC_016863.1 secretion system apparatus protein SsaM (SW:SSAM_SALTY); type III secretion system apparatus protein 1451838 ssaM 990282001378 ssaM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type III secretion system apparatus protein YP_005251917.1 1451470 D 990282 CDS YP_005251918.1 378988754 1451823..1453868 1 NC_016863.1 with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; secretion system apparatus protein SsaV 1453868 ssaV 990282001379 ssaV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secretion system apparatus protein SsaV YP_005251918.1 1451823 D 990282 CDS YP_005251919.1 378988755 1453858..1455159 1 NC_016863.1 similar to YscN family of proteins; probable secretion system apparatus ATP synthase SsaN (SW:SSAN_SALTY); type III secretion system ATPase 1455159 ssaN 990282001380 ssaN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type III secretion system ATPase YP_005251919.1 1453858 D 990282 CDS YP_005251920.1 378988756 1455162..1455539 1 NC_016863.1 secretion system apparatus protein SsaO (SW:SSAO_SALTY); type III secretion system apparatus protein 1455539 ssaO 990282001381 ssaO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type III secretion system apparatus protein YP_005251920.1 1455162 D 990282 CDS YP_005251921.1 378988757 1455520..1455894 1 NC_016863.1 secretion system apparatus protein SsaP (SW:SSAP_SALTY); type III secretion system apparatus protein 1455894 ssaP 990282001382 ssaP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type III secretion system apparatus protein YP_005251921.1 1455520 D 990282 CDS YP_005251922.1 378988758 1455875..1456843 1 NC_016863.1 secretion system apparatus protein SsaQ (SW:SSAQ_SALTY); type III secretion system apparatus protein; type III secretion system protein 1456843 ssaQ 990282001383 ssaQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type III secretion system protein YP_005251922.1 1455875 D 990282 CDS YP_005251923.1 378988759 1456911..1457558 1 NC_016863.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 1457558 ssaR 990282001384 ssaR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type III secretion system protein YP_005251923.1 1456911 D 990282 CDS YP_005251924.1 378988760 1457555..1457821 1 NC_016863.1 secretion system apparatus protein SsaS (SW:SSAS_SALTY); similar to YscS of the secretion system of Yersinia; type III secretion system apparatus protein 1457821 ssaS 990282001385 ssaS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type III secretion system apparatus protein YP_005251924.1 1457555 D 990282 CDS YP_005251925.1 378988761 1457822..1458601 1 NC_016863.1 secretion system apparatus protein SsaT (SW:SSAT_SALTY); similar to YscT of the secretion system of Yersinia; type III secretion system apparatus protein 1458601 ssaT 990282001386 ssaT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type III secretion system apparatus protein YP_005251925.1 1457822 D 990282 CDS YP_005251926.1 378988762 1458598..1459656 1 NC_016863.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli; secretion system apparatus protein SsaU 1459656 ssaU 990282001387 ssaU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secretion system apparatus protein SsaU YP_005251926.1 1458598 D 990282 CDS YP_005251927.1 378988763 complement(1460129..1461502) 1 NC_016863.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 1461502 ydhE 990282001390 ydhE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multidrug efflux protein YP_005251927.1 1460129 R 990282 CDS YP_005251928.1 378988764 1461719..1462360 1 NC_016863.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1462360 ribE 990282001391 ribE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 riboflavin synthase subunit alpha YP_005251928.1 1461719 D 990282 CDS YP_005251929.1 378988765 complement(1462402..1463550) 1 NC_016863.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase 1463550 cfa 990282001392 cfa Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cyclopropane-fatty-acyl-phospholipid synthase YP_005251929.1 1462402 R 990282 CDS YP_005251930.1 378988766 complement(1463840..1465045) 1 NC_016863.1 uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 1465045 ydhC 990282001393 ydhC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 inner membrane transport protein YdhC YP_005251930.1 1463840 R 990282 CDS YP_005251931.1 378988767 1465158..1466090 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74731.1); LysR family; putative DNA-binding transcriptional regulator 1466090 ydhB 990282001394 ydhB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA-binding transcriptional regulator YP_005251931.1 1465158 D 990282 CDS YP_005251932.1 378988768 complement(1466087..1467112) 1 NC_016863.1 binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR 1467112 purR 990282001395 purR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional repressor PurR YP_005251932.1 1466087 R 990282 CDS YP_005251933.1 378988769 complement(1467580..1468161) 1 NC_016863.1 SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase 1468161 sodB 990282001396 sodB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 superoxide dismutase YP_005251933.1 1467580 R 990282 CDS YP_005251934.1 378988770 complement(1468288..1469142) 1 NC_016863.1 similar to Escherichia coli putative lipoprotein (AAC74727.1); putative cell wall-associated hydrolase 1469142 ydhO 990282001397 ydhO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cell wall-associated hydrolase YP_005251934.1 1468288 R 990282 CDS YP_005251935.1 378988771 1469444..1469791 1 NC_016863.1 hypothetical protein 1469791 ydhD 990282001398 ydhD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251935.1 1469444 D 990282 CDS YP_005251936.1 378988772 complement(1469869..1470516) 1 NC_016863.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1470516 rnt 990282001399 rnt Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonuclease T YP_005251936.1 1469869 R 990282 CDS YP_005251937.1 378988773 complement(1470617..1471024) 1 NC_016863.1 Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; glyoxalase I 1471024 gloA 990282001400 gloA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glyoxalase I YP_005251937.1 1470617 R 990282 CDS YP_005251938.1 378988774 complement(1471093..1472190) 1 NC_016863.1 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 1472190 nemA 990282001401 nemA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-ethylmaleimide reductase YP_005251938.1 1471093 R 990282 CDS YP_005251939.1 378988775 complement(1472249..1472848) 1 NC_016863.1 TetR/AcrR family; putative transcriptional repressor 1472848 ydhM 990282001402 ydhM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional repressor YP_005251939.1 1472249 R 990282 CDS YP_005251940.1 378988776 1472951..1473190 1 NC_016863.1 putative oxidoreductase 1473190 ydhL 990282001403 ydhL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidoreductase YP_005251940.1 1472951 D 990282 CDS YP_005251941.1 378988777 1473241..1474137 1 NC_016863.1 putative aldo/keto reductase 1474137 ydhF 990282001404 ydhF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative aldo/keto reductase YP_005251941.1 1473241 D 990282 CDS YP_005251942.1 378988778 1474217..1474738 1 NC_016863.1 SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1474738 sodC 990282001405 sodC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 superoxide dismutase YP_005251942.1 1474217 D 990282 CDS YP_005251943.1 378988779 complement(1474714..1476753) 1 NC_016863.1 putative inner membrane protein 1476753 990282001406 STMUK_1407 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251943.1 1474714 R 990282 CDS YP_005251944.1 378988780 complement(1476753..1477649) 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC74716.1); putative multidrug resistance efflux pump 1477649 ydhJ 990282001407 ydhJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative multidrug resistance efflux pump YP_005251944.1 1476753 R 990282 CDS YP_005251945.1 378988781 complement(1477616..1477852) 1 NC_016863.1 putative inner membrane protein 1477852 ydhI 990282001408 ydhI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251945.1 1477616 R 990282 CDS YP_005251946.1 378988782 1478047..1478487 1 NC_016863.1 Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1478487 slyA 990282001409 slyA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator SlyA YP_005251946.1 1478047 D 990282 CDS YP_005251947.1 378988783 complement(1478535..1479002) 1 NC_016863.1 outer membrane lipoprotein SlyB precursor (SW:SLYB_SALTY); putative outer membrane lipoprotein 1479002 slyB 990282001410 slyB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005251947.1 1478535 R 990282 CDS YP_005251948.1 378988784 1479274..1480395 1 NC_016863.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1480395 ydhH 990282001411 ydhH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anhydro-N-acetylmuramic acid kinase YP_005251948.1 1479274 D 990282 CDS YP_005251949.1 378988785 1480483..1480812 1 NC_016863.1 MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1480812 mliC 990282001412 mliC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lysozyme inhibitor YP_005251949.1 1480483 D 990282 CDS YP_005251950.1 378988786 1480871..1481527 1 NC_016863.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1481527 pdxH 990282001413 pdxH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyridoxamine 5'-phosphate oxidase YP_005251950.1 1480871 D 990282 CDS YP_005251951.1 378988787 1481654..1482928 1 NC_016863.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1482928 tyrS 990282001414 tyrS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tyrosyl-tRNA synthetase YP_005251951.1 1481654 D 990282 CDS YP_005251952.1 378988788 1482988..1483848 1 NC_016863.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1483848 pdxY 990282001415 pdxY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyridoxamine kinase YP_005251952.1 1482988 D 990282 CDS YP_005251953.1 378988789 complement(1483907..1484512) 1 NC_016863.1 similar to Escherichia coli glutathionine S-transferase (AAC74707.1); glutathionine S-transferase 1484512 gst 990282001416 gst Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutathionine S-transferase YP_005251953.1 1483907 R 990282 CDS YP_005251954.1 378988790 complement(1484617..1486122) 1 NC_016863.1 mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; putative tripeptide transporter permease 1486122 ydgR 990282001417 ydgR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative tripeptide transporter permease YP_005251954.1 1484617 R 990282 CDS YP_005251955.1 378988791 complement(1486724..1487359) 1 NC_016863.1 DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; endonuclease III 1487359 nth 990282001418 nth Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 endonuclease III YP_005251955.1 1486724 R 990282 CDS YP_005251956.1 378988792 complement(1487359..1488051) 1 NC_016863.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 1488051 ydgQ 990282001419 ydgQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 electron transport complex protein RsxE YP_005251956.1 1487359 R 990282 CDS YP_005251957.1 378988793 complement(1488054..1488674) 1 NC_016863.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 1488674 ydgP 990282001420 ydgP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 electron transport complex protein RnfG YP_005251957.1 1488054 R 990282 CDS YP_005251958.1 378988794 complement(1488678..1489736) 1 NC_016863.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of t; electron transport complex protein RnfD 1489736 rnfD 990282001421 rnfD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 electron transport complex protein RnfD YP_005251958.1 1488678 R 990282 CDS YP_005251959.1 378988795 complement(1489737..1491944) 1 NC_016863.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 1491944 990282001422 STMUK_1423 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 electron transport complex protein RnfC YP_005251959.1 1489737 R 990282 CDS YP_005251960.1 378988796 complement(1491937..1492515) 1 NC_016863.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 1492515 ydgM 990282001423 ydgM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 electron transport complex protein RnfB YP_005251960.1 1491937 R 990282 CDS YP_005251961.1 378988797 complement(1492515..1493096) 1 NC_016863.1 inner membrane protein; Na(+)-translocating NADH-quinone reductase subunit E 1493096 990282001424 STMUK_1425 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Na(+)-translocating NADH-quinone reductase subunit E YP_005251961.1 1492515 R 990282 CDS YP_005251962.1 378988798 complement(1493173..1493613) 1 NC_016863.1 putative inner membrane protein 1493613 ydgK 990282001425 ydgK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251962.1 1493173 R 990282 CDS YP_005251963.1 378988799 complement(1493702..1493917) 1 NC_016863.1 YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate; oriC-binding nucleoid-associated protein 1493917 ydgT 990282001426 ydgT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 oriC-binding nucleoid-associated protein YP_005251963.1 1493702 R 990282 CDS YP_005251964.1 378988800 1494473..1495588 1 NC_016863.1 putative oxidoreductase 1495588 ydgJ 990282001427 ydgJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidoreductase YP_005251964.1 1494473 D 990282 CDS YP_005251965.1 378988801 complement(1495663..1496664) 1 NC_016863.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 1496664 add 990282001428 add Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 adenosine deaminase YP_005251965.1 1495663 R 990282 CDS YP_005251966.1 378988802 complement(1497368..1498876) 1 NC_016863.1 hypothetical protein 1498876 ydgA 990282001429 ydgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251966.1 1497368 R 990282 CDS YP_005251967.1 378988803 complement(1498979..1500154) 1 NC_016863.1 mannose-6-phosphate isomerase (SW:MANA_SALTY); mannose-6-phosphate isomerase 1500154 manA 990282001430 manA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 mannose-6-phosphate isomerase YP_005251967.1 1498979 R 990282 CDS YP_005251968.1 378988804 1500354..1502000 1 NC_016863.1 fumarate hydratase class I aerobic isozyme (SW:FUMA_SALTY); fumarase A 1502000 fumA 990282001431 fumA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fumarase A YP_005251968.1 1500354 D 990282 CDS YP_005251969.1 378988805 1502168..1503571 1 NC_016863.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1503571 fumC 990282001432 fumC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fumarate hydratase YP_005251969.1 1502168 D 990282 CDS YP_005251970.1 378988806 complement(1503568..1504497) 1 NC_016863.1 binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein 1504497 tus 990282001433 tus Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA replication terminus site-binding protein YP_005251970.1 1503568 R 990282 CDS YP_005251971.1 378988807 complement(1504573..1505874) 1 NC_016863.1 similar to Escherichia coli sensor histidine protein kinase (RstA regulator) (AAC74681.1); in two-component regulatory system with RstA; sensor protein RstB 1505874 rstB 990282001434 rstB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sensor protein RstB YP_005251971.1 1504573 R 990282 CDS YP_005251972.1 378988808 complement(1505985..1507691) 1 NC_016863.1 hypothetical protein 1507691 990282001435 STMUK_1436 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251972.1 1505985 R 990282 CDS YP_005251973.1 378988809 complement(1507844..1508977) 1 NC_016863.1 similar to Escherichia coli putative outer membrane protein (AAC74459.1); non-specific porin; outer membrane protein N 1508977 ompN 990282001436 ompN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane protein N YP_005251973.1 1507844 R 990282 CDS YP_005251974.1 378988810 complement(1509457..1510188) 1 NC_016863.1 response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA 1510188 rstA 990282001437 rstA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator RstA YP_005251974.1 1509457 R 990282 CDS YP_005251975.1 378988811 1510315..1510650 1 NC_016863.1 putative inner membrane protein 1510650 ydgC 990282001438 ydgC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005251975.1 1510315 D 990282 CDS YP_005251976.1 378988812 complement(1510712..1512094) 1 NC_016863.1 similar to Escherichia coli putative arginine/ornithine antiporter (AAC74677.1); putative amino acid transporter 1512094 ydgI 990282001439 ydgI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative amino acid transporter YP_005251976.1 1510712 R 990282 CDS YP_005251977.1 378988813 complement(1512393..1513337) 1 NC_016863.1 hypothetical protein 1513337 ydgH 990282001440 ydgH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005251977.1 1512393 R 990282 CDS YP_005251978.1 378988814 1513864..1515393 1 NC_016863.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons fro; NAD(P) transhydrogenase subunit alpha 1515393 pntA 990282001441 pntA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NAD(P) transhydrogenase subunit alpha YP_005251978.1 1513864 D 990282 CDS YP_005251979.1 378988815 1515404..1516792 1 NC_016863.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-ste; pyridine nucleotide transhydrogenase 1516792 pntB 990282001442 pntB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyridine nucleotide transhydrogenase YP_005251979.1 1515404 D 990282 CDS YP_005251980.1 378988816 complement(1516967..1518001) 1 NC_016863.1 transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; putative transport protein 1518001 ydgG 990282001443 ydgG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005251980.1 1516967 R 990282 CDS YP_005251981.1 378988817 1518419..1518781 1 NC_016863.1 with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtJ 1518781 ydgF 990282001444 ydgF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multidrug efflux system protein MdtJ YP_005251981.1 1518419 D 990282 CDS YP_005251982.1 378988818 1518768..1519097 1 NC_016863.1 with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtI 1519097 ydgE 990282001445 ydgE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multidrug efflux system protein MdtI YP_005251982.1 1518768 D 990282 CDS YP_005251983.1 378988819 complement(1519137..1519958) 1 NC_016863.1 putative protease 1519958 990282001446 STMUK_1447 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative protease YP_005251983.1 1519137 R 990282 CDS YP_005251984.1 378988820 complement(1520227..1520511) 1 NC_016863.1 required for growth and survival under moderately acid conditions; acid shock protein 1520511 990282001447 STMUK_1448 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acid shock protein YP_005251984.1 1520227 R 990282 CDS YP_005251985.1 378988821 complement(1520870..1522123) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC74668.1); MFS family; putative transport protein 1522123 ynfM 990282001448 ynfM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005251985.1 1520870 R 990282 CDS YP_005251986.1 378988822 1522243..1523142 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74667.1); LysR family; putative transcriptional regulator 1523142 ynfL 990282001449 ynfL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005251986.1 1522243 D 990282 CDS YP_005251987.1 378988823 1523270..1524490 1 NC_016863.1 similar to Escherichia coli putative NagC-like transcriptional regulator (AAC74666.1); repressor of ptsG and ptsHI; global repressor of carbohydrate metabolism pts operon; NagC/XylR family; pts operon transcriptional repressor 1524490 mlc 990282001450 mlc Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pts operon transcriptional repressor YP_005251987.1 1523270 D 990282 CDS YP_005251988.1 378988824 1524616..1525311 1 NC_016863.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; putative dithiobiotin synthetase 1525311 bioD 990282001451 bioD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dithiobiotin synthetase YP_005251988.1 1524616 D 990282 CDS YP_005251989.1 378988825 complement(1525267..1526556) 1 NC_016863.1 similar to Escherichia coli putative chloride channel (AAC74664.1); putative voltage-gated ClC-type chloride channel ClcB 1526556 990282001452 STMUK_1453 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative voltage-gated ClC-type chloride channel ClcB YP_005251989.1 1525267 R 990282 CDS YP_005251990.1 378988826 complement(1526692..1527840) 1 NC_016863.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC75190.1); ABC-type ATPase component; proline/glycine betaine transport system protein 1527840 990282001453 STMUK_1454 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 proline/glycine betaine transport system protein YP_005251990.1 1526692 R 990282 CDS YP_005251991.1 378988827 complement(1527840..1528487) 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein (AAC75189.1); binding-protein-dependent; putative ABC transporter permease 1528487 990282001454 STMUK_1455 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter permease YP_005251991.1 1527840 R 990282 CDS YP_005251992.1 378988828 complement(1528497..1529399) 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein (AAC75192.1); putative ABC transporter periplasmic component 1529399 990282001455 STMUK_1456 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter periplasmic component YP_005251992.1 1528497 R 990282 CDS YP_005251993.1 378988829 complement(1529428..1530138) 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein (AAC75189.1); ABC-type transport systems; putative transport system permease component 1530138 990282001456 STMUK_1457 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport system permease component YP_005251993.1 1529428 R 990282 CDS YP_005251994.1 378988830 complement(1530443..1531057) 1 NC_016863.1 binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; twin-argninine leader-binding protein DmsD 1531057 ynfI 990282001457 ynfI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 twin-argninine leader-binding protein DmsD YP_005251994.1 1530443 R 990282 CDS YP_005251995.1 378988831 complement(1531100..1531957) 1 NC_016863.1 similar to Escherichia coli putative DMSO reductase anchor subunit (AAC74662.1); putative dimethylsulfoxide reductase 1531957 990282001458 STMUK_1459 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dimethylsulfoxide reductase YP_005251995.1 1531100 R 990282 CDS YP_005251996.1 378988832 complement(1531959..1532576) 1 NC_016863.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); putative dimethyl sulfoxide reductase 1532576 990282001459 STMUK_1460 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dimethyl sulfoxide reductase YP_005251996.1 1531959 R 990282 CDS YP_005251997.1 378988833 complement(1532587..1535022) 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase; major subunit (AAC74660.1); putative dimethyl sulfoxide reductase 1535022 990282001460 STMUK_1461 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dimethyl sulfoxide reductase YP_005251997.1 1532587 R 990282 CDS YP_005251998.1 378988834 complement(1535121..1537562) 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase; major subunit (AAC74659.1); putative dimethyl sulfoxide reductase chain A1 1537562 990282001461 STMUK_1462 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dimethyl sulfoxide reductase chain A1 YP_005251998.1 1535121 R 990282 CDS YP_005251999.1 378988835 complement(1537716..1538024) 1 NC_016863.1 putative outer membrane protein 1538024 ynfD 990282001462 ynfD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005251999.1 1537716 R 990282 CDS YP_005252000.1 378988836 1538119..1538838 1 NC_016863.1 hypothetical protein 1538838 ynfC 990282001463 ynfC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252000.1 1538119 D 990282 CDS YP_005252001.1 378988837 complement(1538879..1539439) 1 NC_016863.1 similar to Escherichia coli spermidine N1-acetyltransferase (AAC74656.1); spermidine N1-acetyltransferase 1539439 speG 990282001464 speG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 spermidine N1-acetyltransferase YP_005252001.1 1538879 R 990282 CDS YP_005252002.1 378988838 complement(1539475..1539816) 1 NC_016863.1 hypothetical protein 1539816 ynfB 990282001465 ynfB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252002.1 1539475 R 990282 CDS YP_005252003.1 378988839 1539969..1540295 1 NC_016863.1 hypothetical protein 1540295 ynfA 990282001466 ynfA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252003.1 1539969 D 990282 CDS YP_005252004.1 378988840 1540417..1541631 1 NC_016863.1 similar to Escherichia coli starvation-sensing protein (AAC74653.1); putative dehydratase 1541631 rspA 990282001467 rspA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dehydratase YP_005252004.1 1540417 D 990282 CDS YP_005252005.1 378988841 1541642..1542661 1 NC_016863.1 similar to Escherichia coli starvation-sensing protein (AAC74652.1); putative dehydrogenase 1542661 rspB 990282001468 rspB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dehydrogenase YP_005252005.1 1541642 D 990282 CDS YP_005252006.1 378988842 1542715..1543692 1 NC_016863.1 similar to E. coli putative transport protein(AAC74616.1); Blastp hit to AAC74616.1 (427 aa); putative transport protein 1543692 990282001469 STMUK_1470 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005252006.1 1542715 D 990282 CDS YP_005252007.1 378988843 1543696..1544094 1 NC_016863.1 similar to inner membrane metabolite transport protein YdfJ (Pid: YP_002114523.1).; hypothetical protein 1544094 990282001470 STMUK_1471 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252007.1 1543696 D 990282 CDS YP_005252008.1 378988844 1544238..1545704 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC74615.1); putative mannitol dehydrogenase 1545704 ydfI 990282001471 ydfI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative mannitol dehydrogenase YP_005252008.1 1544238 D 990282 CDS YP_005252009.1 378988845 complement(1545771..1545974) 1 NC_016863.1 putative cytoplasmic protein 1545974 ydfZ 990282001472 ydfZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252009.1 1545771 R 990282 CDS YP_005252010.1 378988846 complement(1546155..1546841) 1 NC_016863.1 GntR family; putative regulatory protein 1546841 ydfH 990282001473 ydfH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005252010.1 1546155 R 990282 CDS YP_005252011.1 378988847 complement(1546971..1547717) 1 NC_016863.1 NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; 3-hydroxy acid dehydrogenase 1547717 ydfG 990282001474 ydfG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-hydroxy acid dehydrogenase YP_005252011.1 1546971 R 990282 CDS YP_005252012.1 378988848 1547856..1549898 1 NC_016863.1 peptidyl-dipeptidase DCP (SW:DCP_SALTY); dipeptidyl carboxypeptidase II 1549898 dcp 990282001475 dcp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dipeptidyl carboxypeptidase II YP_005252012.1 1547856 D 990282 CDS YP_005252013.1 378988849 1550243..1550425 1 NC_016863.1 putative cytoplasmic protein 1550425 990282001476 STMUK_1477 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252013.1 1550243 D 990282 CDS YP_005252014.1 378988850 complement(1550545..1551072) 1 NC_016863.1 competence damage-inducible protein A 1551072 ydeJ 990282001477 ydeJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 competence damage-inducible protein A YP_005252014.1 1550545 R 990282 CDS YP_005252015.1 378988851 1551499..1551891 1 NC_016863.1 hypothetical protein 1551891 ydeI 990282001478 ydeI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252015.1 1551499 D 990282 CDS YP_005252016.1 378988852 complement(1552239..1552334) 1 NC_016863.1 similar to hypothetical protein SeHA_C1687 (Pid: YP_002045555.1).; hypothetical protein 1552334 990282001479 STMUK_1480 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252016.1 1552239 R 990282 CDS YP_005252017.1 378988853 complement(1552582..1553769) 1 NC_016863.1 YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; putative MFS-type transporter YdeE 1553769 ydeE 990282001480 ydeE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative MFS-type transporter YdeE YP_005252017.1 1552582 R 990282 CDS YP_005252018.1 378988854 1553997..1554899 1 NC_016863.1 probable cysteine metabolite efflux pump (SW:EAMA_SALTY); integral membrane protein; O-acetylserine/cysteine export protein 1554899 ydeD 990282001481 ydeD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 O-acetylserine/cysteine export protein YP_005252018.1 1553997 D 990282 CDS YP_005252019.1 378988855 complement(1555018..1555233) 1 NC_016863.1 multiple antibiotic resistance protein MarB (SW:MARB_SALTY); hypothetical protein 1555233 marB 990282001482 marB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252019.1 1555018 R 990282 CDS YP_005252020.1 378988856 complement(1555262..1555696) 1 NC_016863.1 transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF; DNA-binding transcriptional activator MarA 1555696 marA 990282001483 marA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator MarA YP_005252020.1 1555262 R 990282 CDS YP_005252021.1 378988857 complement(1555665..1556099) 1 NC_016863.1 Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR 1556099 marR 990282001484 marR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional repressor MarR YP_005252021.1 1555665 R 990282 CDS YP_005252022.1 378988858 1556358..1557023 1 NC_016863.1 protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 1557023 marC 990282001485 marC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multiple drug resistance protein MarC YP_005252022.1 1556358 D 990282 CDS YP_005252023.1 378988859 complement(1557070..1558260) 1 NC_016863.1 similar to Escherichia coli putative resistance/regulatory protein (AAC74601.1); contributes to control of arabinose regulon; MFS family; sugar efflux transporter 1558260 ydeA 990282001486 ydeA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sugar efflux transporter YP_005252023.1 1557070 R 990282 CDS YP_005252024.1 378988860 complement(1558376..1559248) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74599.1); LysR family; putative transcriptional regulator 1559248 yneJ 990282001487 yneJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252024.1 1558376 R 990282 CDS YP_005252025.1 378988861 1559351..1560739 1 NC_016863.1 in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; putative succinate-semialdehyde dehydrogenase 1560739 yneI 990282001488 yneI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative succinate-semialdehyde dehydrogenase YP_005252025.1 1559351 D 990282 CDS YP_005252026.1 378988862 1560812..1561738 1 NC_016863.1 catalyzes the formation of glutamate from glutamine; glutaminase 1561738 yneH 990282001489 yneH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutaminase YP_005252026.1 1560812 D 990282 CDS YP_005252027.1 378988863 1561738..1562097 1 NC_016863.1 putative cytoplasmic protein 1562097 yneG 990282001490 yneG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252027.1 1561738 D 990282 CDS YP_005252028.1 378988864 1562321..1563268 1 NC_016863.1 putative inner membrane protein 1563268 990282001491 STMUK_1492 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252028.1 1562321 D 990282 CDS YP_005252029.1 378988865 complement(1563324..1563866) 1 NC_016863.1 putative outer membrane protein 1563866 990282001492 STMUK_1493 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005252029.1 1563324 R 990282 CDS YP_005252030.1 378988866 1563715..1564041 1 NC_016863.1 putative inner membrane protein 1564041 990282001493 STMUK_1494 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252030.1 1563715 D 990282 CDS YP_005252031.1 378988867 1564583..1565701 1 NC_016863.1 similar to Escherichia coli putative outer membrane protein (AAC74459.1); putative outer membrane protein 1565701 990282001494 STMUK_1495 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005252031.1 1564583 D 990282 CDS YP_005252032.1 378988868 complement(1565842..1566183) 1 NC_016863.1 similar to Escherichia coli may modulate levels of hydrogenease-2 (AAC76027.1); putative hydrogenase 1566183 990282001495 STMUK_1496 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrogenase YP_005252032.1 1565842 R 990282 CDS YP_005252033.1 378988869 complement(1566196..1567083) 1 NC_016863.1 dehydrogenase 1567083 990282001496 STMUK_1497 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dehydrogenase YP_005252033.1 1566196 R 990282 CDS YP_005252034.1 378988870 complement(1567071..1568132) 1 NC_016863.1 similar to Escherichia coli nickel incorporation into hydrogenase-1 proteins (AAC74062.1); putative hydrogenase 1568132 990282001497 STMUK_1498 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrogenase YP_005252034.1 1567071 R 990282 CDS YP_005252035.1 378988871 complement(1568150..1568560) 1 NC_016863.1 similar to Escherichia coli processing of HyaA and HyaB proteins (AAC74061.1); putative hydrogenase 1568560 990282001498 STMUK_1499 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrogenase YP_005252035.1 1568150 R 990282 CDS YP_005252036.1 378988872 complement(1568557..1568856) 1 NC_016863.1 putative hydrogenase protein 1568856 990282001499 STMUK_1500 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrogenase protein YP_005252036.1 1568557 R 990282 CDS YP_005252037.1 378988873 complement(1568856..1569464) 1 NC_016863.1 similar to Escherichia coli processing of HyaA and HyaB proteins (AAC74060.1); putative hydrogenase maturation protease 1569464 990282001500 STMUK_1501 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrogenase maturation protease YP_005252037.1 1568856 R 990282 CDS YP_005252038.1 378988874 complement(1569470..1570213) 1 NC_016863.1 similar to Escherichia coli probable Ni/Fe hydrogenase 1 b-type cytochrome subunit (AAC74059.1); putative Ni/Fe hydrogenase 1 b-type cytochrome subunit 1570213 990282001501 STMUK_1502 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative Ni/Fe hydrogenase 1 b-type cytochrome subunit YP_005252038.1 1569470 R 990282 CDS YP_005252039.1 378988875 complement(1570164..1571966) 1 NC_016863.1 similar to Escherichia coli hydrogenase-1 large subunit (AAC74058.1); putative hydrogenase-1 large subunit 1571966 990282001502 STMUK_1503 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrogenase-1 large subunit YP_005252039.1 1570164 R 990282 CDS YP_005252040.1 378988876 complement(1571969..1573072) 1 NC_016863.1 similar to Escherichia coli hydrogenase-1 small subunit (AAC74057.1); putative hydrogenase-1 small subunit 1573072 990282001503 STMUK_1504 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrogenase-1 small subunit YP_005252040.1 1571969 R 990282 CDS YP_005252041.1 378988877 complement(1573200..1573352) 1 NC_016863.1 similar to hypothetical protein SPC_2188 (Pid: YP_002637753.1).; hypothetical protein 1573352 990282001504 STMUK_1505 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252041.1 1573200 R 990282 CDS YP_005252042.1 378988878 1573501..1574592 1 NC_016863.1 putative hydrolase 1574592 990282001505 STMUK_1506 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase YP_005252042.1 1573501 D 990282 CDS YP_005252043.1 378988879 1574638..1575429 1 NC_016863.1 similar to Escherichia coli regulator for uxu operon (AAC77280.1); GntR family; putative regulatory protein 1575429 990282001506 STMUK_1507 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005252043.1 1574638 D 990282 CDS YP_005252044.1 378988880 complement(1575488..1576513) 1 NC_016863.1 similar to Escherichia coli starvation-sensing protein (AAC74652.1); putative zinc-binding dehydrogenase 1576513 990282001507 STMUK_1508 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative zinc-binding dehydrogenase YP_005252044.1 1575488 R 990282 CDS YP_005252045.1 378988881 complement(1576488..1577774) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC76161.1); putative transport protein 1577774 990282001508 STMUK_1509 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005252045.1 1576488 R 990282 CDS YP_005252046.1 378988882 complement(1577951..1579507) 1 NC_016863.1 PhoPQ-regulated protein 1579507 pqaA 990282001509 pqaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PhoPQ-regulated protein YP_005252046.1 1577951 R 990282 CDS YP_005252047.1 378988883 complement(1579577..1580818) 1 NC_016863.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC73932.1); putative multidrug efflux protein 1580818 990282001510 STMUK_1511 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative multidrug efflux protein YP_005252047.1 1579577 R 990282 CDS YP_005252048.1 378988884 complement(1580808..1582316) 1 NC_016863.1 similar to Escherichia coli 3-(3-hydroxyphenyl)propionate hydroxylase (AAC73450.1); hypothetical protein 1582316 990282001511 STMUK_1512 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252048.1 1580808 R 990282 CDS YP_005252049.1 378988885 1582361..1582849 1 NC_016863.1 marR-family; putative transcriptional regulator 1582849 990282001512 STMUK_1513 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252049.1 1582361 D 990282 CDS YP_005252050.1 378988886 1583042..1584121 1 NC_016863.1 similar to Escherichia coli synthesis of queuine in tRNA; probably S-adenosylmethionine/tRNA ribosyltransferase-isomerase (AAC73508.1); putative S-adenosylmethionine/tRNA-ribosyltransferase-isomerase 1584121 990282001513 STMUK_1514 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative S-adenosylmethionine/tRNA-ribosyltransferase-isomerase YP_005252050.1 1583042 D 990282 CDS YP_005252051.1 378988887 complement(1584173..1584562) 1 NC_016863.1 putative translation initiation inhibitor 1584562 990282001514 STMUK_1515 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative translation initiation inhibitor YP_005252051.1 1584173 R 990282 CDS YP_005252052.1 378988888 complement(1584733..1585017) 1 NC_016863.1 putative cytoplasmic protein 1585017 990282001515 STMUK_1516 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252052.1 1584733 R 990282 CDS YP_005252053.1 378988889 complement(1585007..1585255) 1 NC_016863.1 putative cytoplasmic protein 1585255 990282001516 STMUK_1517 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252053.1 1585007 R 990282 CDS YP_005252054.1 378988890 1585612..1585944 1 NC_016863.1 similar to hypothetical protein STM1551.1n (Pid: NP_945161.1).; hypothetical protein 1585944 990282001517 STMUK_1518 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252054.1 1585612 D 990282 CDS YP_005252055.1 378988891 1586087..1586995 1 NC_016863.1 putative cytoplasmic protein 1586995 990282001518 STMUK_1519 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252055.1 1586087 D 990282 CDS YP_005252056.1 378988892 1587048..1587440 1 NC_016863.1 hypothetical protein 1587440 990282001519 STMUK_1520 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252056.1 1587048 D 990282 CDS YP_005252057.1 378988893 1587577..1587705 1 NC_016863.1 hypothetical protein 1587705 990282001520 STMUK_1521 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252057.1 1587577 D 990282 CDS YP_005252058.1 378988894 complement(1588095..1588292) 1 NC_016863.1 similar to hypothetical protein SPC_2184 (Pid: YP_002637750.1).; hypothetical protein 1588292 990282001521 STMUK_1522 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252058.1 1588095 R 990282 CDS YP_005252059.1 378988895 complement(1588574..1590040) 1 NC_016863.1 putative coiled-coil protein 1590040 990282001522 STMUK_1523 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative coiled-coil protein YP_005252059.1 1588574 R 990282 CDS YP_005252060.1 378988896 1590299..1591306 1 NC_016863.1 similar to Escherichia coli repressor of galETK operon (AAC75876.1); putative transcriptional regulator 1591306 990282001523 STMUK_1524 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252060.1 1590299 D 990282 CDS YP_005252061.1 378988897 1591450..1592901 1 NC_016863.1 similar to Escherichia coli transport of dicarboxylates (AAC73722.1); putative Na+/H+ antiporter 1592901 990282001524 STMUK_1525 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative Na+/H+ antiporter YP_005252061.1 1591450 D 990282 CDS YP_005252062.1 378988898 1592914..1594116 1 NC_016863.1 similar to Escherichia coli enzyme that may degrade or block biosynthesis of endogenous mal inducer; probably aminotrasferase (AAC74694.1); putative aminotransferase 1594116 990282001525 STMUK_1526 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative aminotransferase YP_005252062.1 1592914 D 990282 CDS YP_005252063.1 378988899 complement(1594229..1596304) 1 NC_016863.1 similar to Escherichia coli part of glycogen operon; glycosyl hydrolase; debranching enzyme (AAC76456.1); putative glycosyl hydrolase 1596304 990282001526 STMUK_1527 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyl hydrolase YP_005252063.1 1594229 R 990282 CDS YP_005252064.1 378988900 complement(1596361..1598889) 1 NC_016863.1 similar to Escherichia coli trehalase 6-P hydrolase (AAC77196.1); putative glycosyl hydrolase 1598889 990282001527 STMUK_1528 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyl hydrolase YP_005252064.1 1596361 R 990282 CDS YP_005252065.1 378988901 complement(1598886..1600670) 1 NC_016863.1 similar to Escherichia coli 1,4-alpha-glucan branching enzyme (AAC76457.1); putative alpha amylase 1600670 990282001528 STMUK_1529 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative alpha amylase YP_005252065.1 1598886 R 990282 CDS YP_005252066.1 378988902 complement(1600799..1601584) 1 NC_016863.1 outer membrane or secreted; putative lipoprotein 1601584 990282001529 STMUK_1530 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative lipoprotein YP_005252066.1 1600799 R 990282 CDS YP_005252067.1 378988903 complement(1601727..1602056) 1 NC_016863.1 acid-resistance protein 1602056 hdeB 990282001530 hdeB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acid-resistance protein YP_005252067.1 1601727 R 990282 CDS YP_005252068.1 378988904 complement(1602406..1602837) 1 NC_016863.1 similar to Escherichia coli osmotically inducible protein (AAC74555.1); resistance protein; osmotically inducible; putative envelope protein 1602837 osmC 990282001531 osmC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative envelope protein YP_005252068.1 1602406 R 990282 CDS YP_005252069.1 378988905 1603350..1603565 1 NC_016863.1 biofilm-dependent modulation protein 1603565 yddX 990282001532 yddX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 biofilm-dependent modulation protein YP_005252069.1 1603350 D 990282 CDS YP_005252070.1 378988906 1603660..1603803 1 NC_016863.1 protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; 30S ribosomal subunit S22 1603803 sra 990282001533 sra Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal subunit S22 YP_005252070.1 1603660 D 990282 CDS YP_005252071.1 378988907 1603980..1605677 1 NC_016863.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1605677 sfcA 990282001534 sfcA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 malate dehydrogenase YP_005252071.1 1603980 D 990282 CDS YP_005252072.1 378988908 1605963..1606973 1 NC_016863.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 1606973 adhA 990282001535 adhA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alcohol dehydrogenase YP_005252072.1 1605963 D 990282 CDS YP_005252073.1 378988909 complement(1607064..1607720) 1 NC_016863.1 nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase; formate dehydrogenase-N subunit gamma 1607720 fdnI 990282001536 fdnI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formate dehydrogenase-N subunit gamma YP_005252073.1 1607064 R 990282 CDS YP_005252074.1 378988910 complement(1607713..1608597) 1 NC_016863.1 similar to Escherichia coli formate dehydrogenase-N; nitrate-inducible; iron-sulfur beta subunit (AAD13439.1); Fe-S beta subunit; formate dehydrogenase-N beta subunit 1608597 fdnH 990282001537 fdnH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formate dehydrogenase-N beta subunit YP_005252074.1 1607713 R 990282 CDS YP_005252075.1 378988911 1611993..1612817 1 NC_016863.1 hypothetical protein 1612817 yddG 990282001539 yddG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252075.1 1611993 D 990282 CDS YP_005252076.1 378988912 1613342..1614430 1 NC_016863.1 outer membrane porin protein PmpD (SW:OMPD_SALTY); putative outer membrane porin 1614430 nmpC 990282001540 nmpC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane porin YP_005252076.1 1613342 D 990282 CDS YP_005252077.1 378988913 1614574..1614954 1 NC_016863.1 putative cytoplasmic protein 1614954 990282001541 STMUK_1542 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252077.1 1614574 D 990282 CDS YP_005252078.1 378988914 complement(1614979..1616466) 1 NC_016863.1 methyl viologen resistance protein SmvA (SW:SMVA_SALTY); methyl viologen resistance 1616466 smvA 990282001542 smvA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 methyl viologen resistance YP_005252078.1 1614979 R 990282 CDS YP_005252079.1 378988915 1616583..1617161 1 NC_016863.1 TetR family; putative transcriptional regulator 1617161 990282001543 STMUK_1544 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252079.1 1616583 D 990282 CDS YP_005252080.1 378988916 1617376..1618764 1 NC_016863.1 nitrite extrusion protein 2; nitrite facilitator 2 (SW:NARU_SALTY); MFS superfamily; nitrate extrusion protein 1618764 narU 990282001544 narU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrate extrusion protein YP_005252080.1 1617376 D 990282 CDS YP_005252081.1 378988917 1618856..1622596 1 NC_016863.1 similar to Escherichia coli cryptic nitrate reductase 2; alpha subunit (AAC74550.1); nitrate reductase 2 alpha subunit 1622596 narZ 990282001545 narZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrate reductase 2 alpha subunit YP_005252081.1 1618856 D 990282 CDS YP_005252082.1 378988918 1622593..1624137 1 NC_016863.1 similar to Escherichia coli cryptic nitrate reductase 2; beta subunit (AAC74549.1); nitrate reductase 2 beta subunit 1624137 narY 990282001546 narY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrate reductase 2 beta subunit YP_005252082.1 1622593 D 990282 CDS YP_005252083.1 378988919 1624137..1624832 1 NC_016863.1 similar to Escherichia coli cryptic nitrate reductase 2; delta subunit; assembly function (AAC74548.1); nitrate reductase 2 delta subunit 1624832 narW 990282001547 narW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrate reductase 2 delta subunit YP_005252083.1 1624137 D 990282 CDS YP_005252084.1 378988920 1624829..1625509 1 NC_016863.1 similar to Escherichia coli cryptic nitrate reductase 2; gamma subunit (AAC74547.1); nitrate reductase 2 gamma subunit 1625509 narV 990282001548 narV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrate reductase 2 gamma subunit YP_005252084.1 1624829 D 990282 CDS YP_005252085.1 378988921 1625615..1626508 1 NC_016863.1 hypothetical protein in nhoA 5'region (SW:YDDE_SALTY); hypothetical protein 1626508 yddE 990282001549 yddE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252085.1 1625615 D 990282 CDS YP_005252086.1 378988922 complement(1626544..1627389) 1 NC_016863.1 N-hydroxyarylamine O-acetyltransferase (SW:NHOA_SALTY); putative arylamine N-acetyltransferase 1627389 nhoA 990282001550 nhoA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative arylamine N-acetyltransferase YP_005252086.1 1626544 R 990282 CDS YP_005252087.1 378988923 complement(1627673..1628305) 1 NC_016863.1 putative cytoplasmic protein 1628305 990282001551 STMUK_1552 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252087.1 1627673 R 990282 CDS YP_005252088.1 378988924 1628818..1630311 1 NC_016863.1 L-asparagine permease (L-asparagine transport protein) (SW:ANSP_SALTY); APC family; L-asparagine transport protein 1630311 ansP 990282001552 ansP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-asparagine transport protein YP_005252088.1 1628818 D 990282 CDS YP_005252089.1 378988925 complement(1630388..1630609) 1 NC_016863.1 putative outer membrane lipoprotein 1630609 990282001553 STMUK_1554 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005252089.1 1630388 R 990282 CDS YP_005252090.1 378988926 complement(1630754..1631815) 1 NC_016863.1 similar to Escherichia coli putative receptor (AAC74534.1); hypothetical protein 1631815 990282001554 STMUK_1555 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252090.1 1630754 R 990282 CDS YP_005252091.1 378988927 1632079..1634199 1 NC_016863.1 similar to Escherichia coli putative outer membrane receptor for iron transport (AAC74533.1); putative outer membrane receptor 1634199 yncD 990282001555 yncD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane receptor YP_005252091.1 1632079 D 990282 CDS YP_005252092.1 378988928 complement(1634266..1634931) 1 NC_016863.1 GntR family; putative DNA-binding transcriptional regulator 1634931 yncC 990282001556 yncC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA-binding transcriptional regulator YP_005252092.1 1634266 R 990282 CDS YP_005252093.1 378988929 complement(1635265..1636335) 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC74531.1); putative NADP-dependent oxidoreductase 1636335 yncB 990282001557 yncB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative NADP-dependent oxidoreductase YP_005252093.1 1635265 R 990282 CDS YP_005252094.1 378988930 1636514..1637029 1 NC_016863.1 similar to Escherichia coli putative resistance protein (AAC74530.1); putative acyltransferase 1637029 yncA 990282001558 yncA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acyltransferase YP_005252094.1 1636514 D 990282 CDS YP_005252095.1 378988931 1637029..1637478 1 NC_016863.1 putative inner membrane protein 1637478 ydcZ 990282001559 ydcZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252095.1 1637029 D 990282 CDS YP_005252096.1 378988932 complement(1637483..1637716) 1 NC_016863.1 putative cytoplasmic protein 1637716 ydcY 990282001560 ydcY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252096.1 1637483 R 990282 CDS YP_005252097.1 378988933 1637940..1639259 1 NC_016863.1 SrfA (gi|8347258); ssrAB-activated gene; putative virulence protein 1639259 srfA 990282001561 srfA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative virulence protein YP_005252097.1 1637940 D 990282 CDS YP_005252098.1 378988934 1639264..1642245 1 NC_016863.1 SrfB (gi|8347259); ssrAB-activated gene; putative virulence protein 1642245 srfB 990282001562 srfB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative virulence protein YP_005252098.1 1639264 D 990282 CDS YP_005252099.1 378988935 1642242..1644386 1 NC_016863.1 SrfC (gi|8347260); contains predicted coiled-coil structure; ssrAB-activated gene; putative virulence protein 1644386 srfC 990282001563 srfC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative virulence protein YP_005252099.1 1642242 D 990282 CDS YP_005252100.1 378988936 complement(1644431..1644694) 1 NC_016863.1 putative inner membrane protein 1644694 ydcX 990282001564 ydcX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252100.1 1644431 R 990282 CDS YP_005252101.1 378988937 complement(1645003..1646448) 1 NC_016863.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 1646448 ydcW 990282001565 ydcW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 gamma-aminobutyraldehyde dehydrogenase YP_005252101.1 1645003 R 990282 CDS YP_005252102.1 378988938 complement(1646563..1647987) 1 NC_016863.1 similar to Escherichia coli multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system (AAC74521.1); GntR family; putative regulatory protein 1647987 ydcR 990282001566 ydcR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005252102.1 1646563 R 990282 CDS YP_005252103.1 378988939 complement(1648123..1648893) 1 NC_016863.1 D-alanyl-D-alanine dipeptidase for peptidoglycan digestion (gi|4585342); periplasmic dipeptidase precursor 1648893 pdgL 990282001567 pdgL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 periplasmic dipeptidase precursor YP_005252103.1 1648123 R 990282 CDS YP_005252104.1 378988940 complement(1649152..1649382) 1 NC_016863.1 putative inner membrane protein 1649382 990282001568 STMUK_1569 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252104.1 1649152 R 990282 CDS YP_005252105.1 378988941 complement(1649415..1649813) 1 NC_016863.1 putative membrane protein UgtL (gi|4585341); similar to chitinase from Schizosaccharomyces; hypothetical protein 1649813 ugtL 990282001569 ugtL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252105.1 1649415 R 990282 CDS YP_005252106.1 378988942 1650350..1651300 1 NC_016863.1 translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; secreted effector protein 1651300 sifB 990282001570 sifB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secreted effector protein YP_005252106.1 1650350 D 990282 CDS YP_005252107.1 378988943 1651574..1651804 1 NC_016863.1 hypothetical protein 1651804 yncJ 990282001571 yncJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252107.1 1651574 D 990282 CDS YP_005252108.1 378988944 complement(1651805..1653769) 1 NC_016863.1 similar to Escherichia coli putative collagenase (AAC74517.1); putative collagenase 1653769 ydcP 990282001572 ydcP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative collagenase YP_005252108.1 1651805 R 990282 CDS YP_005252109.1 378988945 complement(1653848..1654384) 1 NC_016863.1 oxidoreductase; putative repressor 1654384 ydcN 990282001573 ydcN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative repressor YP_005252109.1 1653848 R 990282 CDS YP_005252110.1 378988946 1654475..1655653 1 NC_016863.1 similar to Escherichia coli putative membrane transport protein (AAC74515.1); putative benzoate membrane transport protein 1655653 990282001574 STMUK_1575 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative benzoate membrane transport protein YP_005252110.1 1654475 D 990282 CDS YP_005252111.1 378988947 complement(1655707..1656375) 1 NC_016863.1 putative outer membrane lipoprotein 1656375 990282001575 STMUK_1576 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005252111.1 1655707 R 990282 CDS YP_005252112.1 378988948 complement(1656531..1657127) 1 NC_016863.1 with TehA confers resistance to tellurite; tellurite resistance protein TehB 1657127 tehB 990282001576 tehB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tellurite resistance protein TehB YP_005252112.1 1656531 R 990282 CDS YP_005252113.1 378988949 complement(1657114..1658127) 1 NC_016863.1 similar to Escherichia coli tellurite resistance (AAC74511.1); TDT family; potassium-tellurite ethidium and proflavin transporter 1658127 tehA 990282001577 tehA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 potassium-tellurite ethidium and proflavin transporter YP_005252113.1 1657114 R 990282 CDS YP_005252114.1 378988950 1658234..1659214 1 NC_016863.1 involved in lipopolysaccharide biosynthesis; putative nucleoside-diphosphate-sugar pyrophosphorylase 1659214 ydcK 990282001578 ydcK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative nucleoside-diphosphate-sugar pyrophosphorylase YP_005252114.1 1658234 D 990282 CDS YP_005252115.1 378988951 complement(1659211..1659750) 1 NC_016863.1 similar to Escherichia coli acetylase; acetylates N-terminal serine of 50S ribosomal subunit protein L7/L12 (AAC74509.1); ribosomal-protein-L7/L12-serine acetyltransferase 1659750 rimL 990282001579 rimL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribosomal-protein-L7/L12-serine acetyltransferase YP_005252115.1 1659211 R 990282 CDS YP_005252116.1 378988952 1659967..1661085 1 NC_016863.1 similar to Escherichia coli putative lyase/synthase (AAC77261.1); putative cellulase protein 1661085 990282001580 STMUK_1581 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cellulase protein YP_005252116.1 1659967 D 990282 CDS YP_005252117.1 378988953 1661082..1661363 1 NC_016863.1 similar to Escherichia coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1); putative PTS system enzymeIIB component 1661363 990282001581 STMUK_1582 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative PTS system enzymeIIB component YP_005252117.1 1661082 D 990282 CDS YP_005252118.1 378988954 1661374..1662687 1 NC_016863.1 similar to Escherichia coli putative PTS system enzyme IIC component (AAC77260.1); putative PTS system enzyme IIC component 1662687 990282001582 STMUK_1583 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative PTS system enzyme IIC component YP_005252118.1 1661374 D 990282 CDS YP_005252119.1 378988955 1662701..1663507 1 NC_016863.1 similar to Escherichia coli putative nucleoside triphosphatase (AAC77259.1); putative nucleoside triphosphatase 1663507 990282001583 STMUK_1584 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative nucleoside triphosphatase YP_005252119.1 1662701 D 990282 CDS YP_005252120.1 378988956 1663639..1664076 1 NC_016863.1 similar to Escherichia coli putative PTS system enzyme II A component (AAC77258.1); putative sugar-specific PTS enzyme II 1664076 990282001584 STMUK_1585 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar-specific PTS enzyme II YP_005252120.1 1663639 D 990282 CDS YP_005252121.1 378988957 1664088..1664720 1 NC_016863.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; epimerase 1664720 990282001585 STMUK_1586 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 epimerase YP_005252121.1 1664088 D 990282 CDS YP_005252122.1 378988958 1664736..1665527 1 NC_016863.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC77256.1); DeoR family; putative transcriptional repressor of sgc operon 1665527 990282001586 STMUK_1587 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional repressor of sgc operon YP_005252122.1 1664736 D 990282 CDS YP_005252123.1 378988959 1665527..1665964 1 NC_016863.1 cryptic aminoglycoside resistance protein 1665964 990282001587 STMUK_1588 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cryptic aminoglycoside resistance protein YP_005252123.1 1665527 D 990282 CDS YP_005252124.1 378988960 complement(1666011..1667213) 1 NC_016863.1 similar to Escherichia coli L-lactate dehydrogenase (AAC76629.1); putative oxidase 1667213 990282001588 STMUK_1589 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidase YP_005252124.1 1666011 R 990282 CDS YP_005252125.1 378988961 complement(1667225..1667800) 1 NC_016863.1 hypothetical protein 1667800 990282001589 STMUK_1590 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252125.1 1667225 R 990282 CDS YP_005252126.1 378988962 complement(1667996..1669651) 1 NC_016863.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 1669651 opgD 990282001590 opgD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucan biosynthesis protein D YP_005252126.1 1667996 R 990282 CDS YP_005252127.1 378988963 complement(1669871..1671379) 1 NC_016863.1 putative carboxylesterase 1671379 990282001591 STMUK_1592 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative carboxylesterase YP_005252127.1 1669871 R 990282 CDS YP_005252128.1 378988964 complement(1671428..1672771) 1 NC_016863.1 putative cytoplasmic protein 1672771 990282001592 STMUK_1593 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252128.1 1671428 R 990282 CDS YP_005252129.1 378988965 1673064..1673987 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74504.1); LysR family; putative transcriptional regulator 1673987 ydcI 990282001593 ydcI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252129.1 1673064 D 990282 CDS YP_005252130.1 378988966 complement(1674048..1675673) 1 NC_016863.1 similar to Escherichia coli methyl-accepting chemotaxis protein III; ribose and galactose sensor receptor (AAC74503.1); methyl-accepting chemotaxis protein III 1675673 trg 990282001594 trg Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 methyl-accepting chemotaxis protein III YP_005252130.1 1674048 R 990282 CDS YP_005252131.1 378988967 complement(1675842..1676960) 1 NC_016863.1 similar to Escherichia coli alcohol dehydrogenase class III; formaldehyde dehydrogenase; glutathione-dependent (AAC73459.1); alcohol dehydrogenase class III 1676960 990282001595 STMUK_1596 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alcohol dehydrogenase class III YP_005252131.1 1675842 R 990282 CDS YP_005252132.1 378988968 complement(1676992..1677267) 1 NC_016863.1 similar to Escherichia coli putative alpha helix chain (AAC73460.1); putative cytoplasmic protein 1677267 990282001596 STMUK_1597 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252132.1 1676992 R 990282 CDS YP_005252133.1 378988969 1677790..1678191 1 NC_016863.1 putative dipicolinate reductase 1678191 990282001597 STMUK_1598 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dipicolinate reductase YP_005252133.1 1677790 D 990282 CDS YP_005252134.1 378988970 complement(1678320..1679036) 1 NC_016863.1 putative inner membrane protein 1679036 990282001598 STMUK_1599 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252134.1 1678320 R 990282 CDS YP_005252135.1 378988971 1679462..1680688 1 NC_016863.1 secreted effector J (gi|9931614); Salmonella translocated effector; regulated by SPI-2; secreted effector protein 1680688 sseJ 990282001599 sseJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secreted effector protein YP_005252135.1 1679462 D 990282 CDS YP_005252136.1 378988972 complement(1680809..1681153) 1 NC_016863.1 putative inner membrane protein 1681153 990282001600 STMUK_1601 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252136.1 1680809 R 990282 CDS YP_005252137.1 378988973 1682060..1682821 1 NC_016863.1 similar to Escherichia coli putative periplasmic binding transport protein (AAC74987.1); putative periplasmic binding protein 1682821 990282001601 STMUK_1602 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative periplasmic binding protein YP_005252137.1 1682060 D 990282 CDS YP_005252138.1 378988974 1682828..1683475 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein; formerly yecC (AAC74985.1); amino acid; putative ABC transporter permease 1683475 990282001602 STMUK_1603 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter permease YP_005252138.1 1682828 D 990282 CDS YP_005252139.1 378988975 1683500..1684231 1 NC_016863.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC76303.1); putative ABC-type polar amino acid transport system ATPase component 1684231 990282001603 STMUK_1604 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type polar amino acid transport system ATPase component YP_005252139.1 1683500 D 990282 CDS YP_005252140.1 378988976 1684228..1684908 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein; formerly yecC (AAC74985.1); putative ABC-type transport system membrane component 1684908 990282001604 STMUK_1605 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type transport system membrane component YP_005252140.1 1684228 D 990282 CDS YP_005252141.1 378988977 1685045..1686595 1 NC_016863.1 putative inner membrane protein 1686595 990282001605 STMUK_1606 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252141.1 1685045 D 990282 CDS YP_005252142.1 378988978 1687284..1687721 1 NC_016863.1 putative SAM-dependent methyltransferase 1687721 990282001606 STMUK_1607 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative SAM-dependent methyltransferase YP_005252142.1 1687284 D 990282 CDS YP_005252143.1 378988979 complement(1687992..1688522) 1 NC_016863.1 B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; cytochrome b561 1688522 cybB 990282001607 cybB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome b561 YP_005252143.1 1687992 R 990282 CDS YP_005252144.1 378988980 complement(1688639..1689439) 1 NC_016863.1 putative inner membrane protein 1689439 ydcF 990282001608 ydcF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252144.1 1688639 R 990282 CDS YP_005252145.1 378988981 complement(1689503..1693405) 1 NC_016863.1 involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA 1693405 hrpA 990282001609 hrpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent RNA helicase HrpA YP_005252145.1 1689503 R 990282 CDS YP_005252146.1 378988982 1693606..1694211 1 NC_016863.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 1694211 acpD 990282001610 acpD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 azoreductase YP_005252146.1 1693606 D 990282 CDS YP_005252147.1 378988983 complement(1694208..1694657) 1 NC_016863.1 putative inner membrane protein 1694657 990282001611 STMUK_1612 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252147.1 1694208 R 990282 CDS YP_005252148.1 378988984 complement(1694800..1695123) 1 NC_016863.1 hypothetical protein 1695123 ydbL 990282001612 ydbL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252148.1 1694800 R 990282 CDS YP_005252149.1 378988985 complement(1695131..1695322) 1 NC_016863.1 putative outer membrane lipoprotein 1695322 ynbE 990282001613 ynbE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005252149.1 1695131 R 990282 CDS YP_005252150.1 378988986 complement(1695322..1697958) 1 NC_016863.1 hypothetical protein 1697958 ydbH 990282001614 ydbH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252150.1 1695322 R 990282 CDS YP_005252151.1 378988987 1698198..1699187 1 NC_016863.1 Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthe; D-lactate dehydrogenase 1699187 ldhA 990282001615 ldhA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-lactate dehydrogenase YP_005252151.1 1698198 D 990282 CDS YP_005252152.1 378988988 1699298..1699708 1 NC_016863.1 similar to Escherichia coli heat shock protein hslJ (AAC74461.1); heat-inducible protein 1699708 hslJ 990282001616 hslJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 heat-inducible protein YP_005252152.1 1699298 D 990282 CDS YP_005252153.1 378988989 complement(1699752..1699907) 1 NC_016863.1 putative cytoplasmic protein 1699907 990282001617 STMUK_1618 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252153.1 1699752 R 990282 CDS YP_005252154.1 378988990 1699934..1700233 1 NC_016863.1 hypothetical protein 1700233 990282001618 STMUK_1619 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252154.1 1699934 D 990282 CDS YP_005252155.1 378988991 1700294..1703818 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase; Fe-S subunit (AAC74460.1); putative pyruvate-flavodoxin oxidoreductase 1703818 nifJ 990282001619 nifJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative pyruvate-flavodoxin oxidoreductase YP_005252155.1 1700294 D 990282 CDS YP_005252156.1 378988992 1704300..1704734 1 NC_016863.1 similar to Escherichia coli putative filament protein (AAC74458.1); putative universal stress protein 1704734 ynaF 990282001620 ynaF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative universal stress protein YP_005252156.1 1704300 D 990282 CDS YP_005252157.1 378988993 complement(1704784..1705122) 1 NC_016863.1 similar to Escherichia coli methylviologen resistance (AAC73644.1); putative membrane transporter of cations 1705122 990282001621 STMUK_1622 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative membrane transporter of cations YP_005252157.1 1704784 R 990282 CDS YP_005252158.1 378988994 1705478..1706413 1 NC_016863.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1706413 ydaO 990282001622 ydaO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 C32 tRNA thiolase YP_005252158.1 1705478 D 990282 CDS YP_005252159.1 378988995 complement(1706457..1707830) 1 NC_016863.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 1707830 dbpA 990282001623 dbpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent RNA helicase DbpA YP_005252159.1 1706457 R 990282 CDS YP_005252160.1 378988996 complement(1708317..1709300) 1 NC_016863.1 zinc transporter 1709300 zntB 990282001624 zntB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 zinc transporter YP_005252160.1 1708317 R 990282 CDS YP_005252161.1 378988997 complement(1709446..1710600) 1 NC_016863.1 similar to Escherichia coli methyl-accepting chemotaxis protein I serine sensor receptor (AAC77311.1); similar to C-terminus of many MCPs; putative methyl-accepting chemotaxis protein 1710600 990282001625 STMUK_1626 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative methyl-accepting chemotaxis protein YP_005252161.1 1709446 R 990282 CDS YP_005252162.1 378988998 complement(1711011..1711574) 1 NC_016863.1 contains putative Smr domain; hypothetical protein 1711574 ydaL 990282001626 ydaL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252162.1 1711011 R 990282 CDS YP_005252163.1 378988999 1711832..1712347 1 NC_016863.1 methylated-DNA protein-cysteine methyltransferase (SW:OGT_SALTY); O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1712347 ogt 990282001627 ogt Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 O-6-alkylguanine-DNA:cysteine-protein methyltransferase YP_005252163.1 1711832 D 990282 CDS YP_005252164.1 378989000 1712501..1713295 1 NC_016863.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1713295 fnr 990282001628 fnr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fumarate/nitrate reduction transcriptional regulator YP_005252164.1 1712501 D 990282 CDS YP_005252165.1 378989001 1713446..1714393 1 NC_016863.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1714393 ydaA 990282001629 ydaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 universal stress protein UspE YP_005252165.1 1713446 D 990282 CDS YP_005252166.1 378989002 complement(1714448..1714702) 1 NC_016863.1 putative inner membrane protein 1714702 ynaJ 990282001630 ynaJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252166.1 1714448 R 990282 CDS YP_005252167.1 378989003 1714941..1715972 1 NC_016863.1 hypothetical protein 1715972 ynaI 990282001631 ynaI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252167.1 1714941 D 990282 CDS YP_005252168.1 378989004 complement(1716058..1716660) 1 NC_016863.1 putative transcriptional regulator 1716660 990282001632 STMUK_1633 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252168.1 1716058 R 990282 CDS YP_005252169.1 378989005 1716704..1717390 1 NC_016863.1 putative cytoplasmic protein 1717390 990282001633 STMUK_1634 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252169.1 1716704 D 990282 CDS YP_005252170.1 378989006 complement(1717862..1718419) 1 NC_016863.1 similar to Escherichia coli thiol peroxidase (AAC74406.1); putative thiol peroxidase 1718419 990282001634 STMUK_1635 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative thiol peroxidase YP_005252170.1 1717862 R 990282 CDS YP_005252171.1 378989007 complement(1718518..1719348) 1 NC_016863.1 hypothetical protein 1719348 990282001635 STMUK_1636 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252171.1 1718518 R 990282 CDS YP_005252172.1 378989008 complement(1719369..1721351) 1 NC_016863.1 similar to Escherichia coli putative factor (AAC74304.1); similar to invasin C of Yersinia; intimin; invasin-like protein 1721351 990282001636 STMUK_1637 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 invasin-like protein YP_005252172.1 1719369 R 990282 CDS YP_005252173.1 378989009 complement(1721426..1722271) 1 NC_016863.1 putative lipoprotein 1722271 990282001637 STMUK_1638 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative lipoprotein YP_005252173.1 1721426 R 990282 CDS YP_005252174.1 378989010 1723814..1724923 1 NC_016863.1 putative cytoplasmic protein 1724923 990282001639 STMUK_1640 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252174.1 1723814 D 990282 CDS YP_005252175.1 378989011 complement(1725137..1725391) 1 NC_016863.1 putative outer membrane lipoprotein 1725391 990282001640 STMUK_1641 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005252175.1 1725137 R 990282 CDS YP_005252176.1 378989012 complement(1725502..1726092) 1 NC_016863.1 AraC family; helix-turn-helix; putative regulatory protein 1726092 990282001641 STMUK_1642 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005252176.1 1725502 R 990282 CDS YP_005252177.1 378989013 1726170..1726883 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC77206.1); oxidoreductase 1726883 990282001642 STMUK_1643 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 oxidoreductase YP_005252177.1 1726170 D 990282 CDS YP_005252178.1 378989014 complement(1726974..1727843) 1 NC_016863.1 putative aldo/keto reductase 1727843 990282001643 STMUK_1644 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative aldo/keto reductase YP_005252178.1 1726974 R 990282 CDS YP_005252179.1 378989015 complement(1728117..1729022) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76546.1); LysR family; putative transcriptional regulator 1729022 990282001644 STMUK_1645 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252179.1 1728117 R 990282 CDS YP_005252180.1 378989016 1729141..1730070 1 NC_016863.1 putative 2'-hydroxyisoflavone reductase 1730070 990282001645 STMUK_1646 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative 2'-hydroxyisoflavone reductase YP_005252180.1 1729141 D 990282 CDS YP_005252181.1 378989017 complement(1730167..1731780) 1 NC_016863.1 similar to Escherichia coli putative transport periplasmic protein (AAC74411.1); negative regulator of mulitple antibiotic resistance; periplasmic murein tripeptide transport protein 1731780 mppA 990282001646 mppA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 periplasmic murein tripeptide transport protein YP_005252181.1 1730167 R 990282 CDS YP_005252182.1 378989018 1731970..1732698 1 NC_016863.1 similar to Escherichia coli putative carboxypeptidase (AAC74408.1); murein peptide amidase A 1732698 ycjI 990282001647 ycjI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 murein peptide amidase A YP_005252182.1 1731970 D 990282 CDS YP_005252183.1 378989019 complement(1732673..1733638) 1 NC_016863.1 similar to Escherichia coli putative muconate cycloisomerase I (AAC74407.1); putative chloromuconate cycloisomerase 1733638 ycjG 990282001648 ycjG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative chloromuconate cycloisomerase YP_005252183.1 1732673 R 990282 CDS YP_005252184.1 378989020 1733754..1734260 1 NC_016863.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1734260 tpx 990282001649 tpx Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiol peroxidase YP_005252184.1 1733754 D 990282 CDS YP_005252185.1 378989021 1734491..1734949 1 NC_016863.1 transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 1734949 tnpA_6 990282001650 tnpA_6 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transposase for IS200 YP_005252185.1 1734491 D 990282 CDS YP_005252186.1 378989022 complement(1735062..1736603) 1 NC_016863.1 regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR 1736603 tyrR 990282001651 tyrR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator TyrR YP_005252186.1 1735062 R 990282 CDS YP_005252187.1 378989023 complement(1736751..1737812) 1 NC_016863.1 hypothetical protein 1737812 ycjF 990282001652 ycjF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252187.1 1736751 R 990282 CDS YP_005252188.1 378989024 complement(1737809..1739212) 1 NC_016863.1 similar to Escherichia coli putative enzymes (AAC74403.1); putative ATPase 1739212 ycjX 990282001653 ycjX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ATPase YP_005252188.1 1737809 R 990282 CDS YP_005252189.1 378989025 complement(1739355..1739669) 1 NC_016863.1 rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; thiosulfate:cyanide sulfurtransferase 1739669 pspE 990282001654 pspE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiosulfate:cyanide sulfurtransferase YP_005252189.1 1739355 R 990282 CDS YP_005252190.1 378989026 complement(1739745..1739963) 1 NC_016863.1 similar to Escherichia coli phage shock protein (AAC74389.1); peripheral inner membrane phage-shock protein 1739963 pspD 990282001655 pspD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peripheral inner membrane phage-shock protein YP_005252190.1 1739745 R 990282 CDS YP_005252191.1 378989027 complement(1739986..1740345) 1 NC_016863.1 with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; DNA-binding transcriptional activator PspC 1740345 pspC 990282001656 pspC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator PspC YP_005252191.1 1739986 R 990282 CDS YP_005252192.1 378989028 complement(1740345..1740569) 1 NC_016863.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 1740569 pspB 990282001657 pspB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phage shock protein B YP_005252192.1 1740345 R 990282 CDS YP_005252193.1 378989029 complement(1740629..1741297) 1 NC_016863.1 involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA 1741297 pspA 990282001658 pspA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phage shock protein PspA YP_005252193.1 1740629 R 990282 CDS YP_005252194.1 378989030 1741468..1742448 1 NC_016863.1 transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; phage shock protein operon transcriptional activator 1742448 pspF 990282001659 pspF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phage shock protein operon transcriptional activator YP_005252194.1 1741468 D 990282 CDS YP_005252195.1 378989031 1742560..1744209 1 NC_016863.1 peptide transport periplasmic protein SapA precursor (SW:SAPA_SALTY); ABC superfamily periplasmic protein; peptide transport protein 1744209 sapA 990282001660 sapA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptide transport protein YP_005252195.1 1742560 D 990282 CDS YP_005252196.1 378989032 1744206..1745171 1 NC_016863.1 peptide transport system permease protein SapB (SW:SAPB_SALTY); ABC superfamily membrane protein; peptide transport protein 1745171 sapB 990282001661 sapB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptide transport protein YP_005252196.1 1744206 D 990282 CDS YP_005252197.1 378989033 1745158..1746048 1 NC_016863.1 peptide transport system permease protein SapC (SW:SAPC_SALTY); ABC superfamily membrane protein; peptide transport protein 1746048 sapC 990282001662 sapC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptide transport protein YP_005252197.1 1745158 D 990282 CDS YP_005252198.1 378989034 1746048..1747040 1 NC_016863.1 peptide transport system atp-binding protein SapD (SW:SAPD_SALTY); ABC superfamily ATP-binding protein; peptide transport protein 1747040 sapD 990282001663 sapD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptide transport protein YP_005252198.1 1746048 D 990282 CDS YP_005252199.1 378989035 1747042..1747848 1 NC_016863.1 peptide transport system atp-binding protein SapF (SW:SAPF_SALTY); ABC superfamily ATP-binding protein; peptide transport protein 1747848 sapF 990282001664 sapF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptide transport protein YP_005252199.1 1747042 D 990282 CDS YP_005252200.1 378989036 complement(1747864..1748571) 1 NC_016863.1 putative diguanylate cyclase/phosphodiesterase domain 2; hypothetical protein 1748571 990282001665 STMUK_1666 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252200.1 1747864 R 990282 CDS YP_005252201.1 378989037 complement(1749038..1750411) 1 NC_016863.1 putative inner membrane protein 1750411 990282001666 STMUK_1667 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252201.1 1749038 R 990282 CDS YP_005252202.1 378989038 1750446..1750625 1 NC_016863.1 putative e6 protein; hypothetical protein 1750625 990282001667 STMUK_1668 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252202.1 1750446 D 990282 CDS YP_005252203.1 378989039 1750600..1750899 1 NC_016863.1 hypothetical 10.4 kDa protein in fabI/envM 5'region (SW:YCJE_SALTY); putative cytoplasmic protein 1750899 ycjE 990282001668 ycjE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252203.1 1750600 D 990282 CDS YP_005252204.1 378989040 1751017..1751805 1 NC_016863.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1751805 fabI 990282001669 fabI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 enoyl-ACP reductase YP_005252204.1 1751017 D 990282 CDS YP_005252205.1 378989041 1752005..1753138 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC74369.1); putative cytoplasmic protein 1753138 yciW 990282001670 yciW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252205.1 1752005 D 990282 CDS YP_005252206.1 378989042 1753227..1755161 1 NC_016863.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 1755161 rnb 990282001671 rnb Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exoribonuclease II YP_005252206.1 1753227 D 990282 CDS YP_005252207.1 378989043 1755423..1757405 1 NC_016863.1 c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 1757405 yciR 990282001672 yciR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 RNase II stability modulator YP_005252207.1 1755423 D 990282 CDS YP_005252208.1 378989044 1757527..1757706 1 NC_016863.1 similar to hypothetical protein SC1698 (Pid: YP_216685.1).; hypothetical protein 1757706 990282001673 STMUK_1674 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252208.1 1757527 D 990282 CDS YP_005252209.1 378989045 1757793..1758545 1 NC_016863.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC74366.1); DeoR family; putative regulatory protein 1758545 yciT 990282001674 yciT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005252209.1 1757793 D 990282 CDS YP_005252210.1 378989046 1758804..1759022 1 NC_016863.1 osmotically inducible lipoprotein B (SW:OSMB_SALTY); osmotically inducible; lipoprotein 1759022 osmB 990282001675 osmB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipoprotein YP_005252210.1 1758804 D 990282 CDS YP_005252211.1 378989047 complement(1759142..1759468) 1 NC_016863.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 1759468 yciH 990282001676 yciH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 translation initiation factor Sui1 YP_005252211.1 1759142 R 990282 CDS YP_005252212.1 378989048 complement(1759468..1760205) 1 NC_016863.1 OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1760205 pyrF 990282001677 pyrF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 orotidine 5'-phosphate decarboxylase YP_005252212.1 1759468 R 990282 CDS YP_005252213.1 378989049 complement(1760396..1761565) 1 NC_016863.1 similar to Escherichia coli putative heat shock protein (AAC74362.1); tetratricopeptide repeat protein 1761565 yciM 990282001678 yciM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tetratricopeptide repeat protein YP_005252213.1 1760396 R 990282 CDS YP_005252214.1 378989050 complement(1761572..1761880) 1 NC_016863.1 putative inner membrane protein 1761880 yciS 990282001679 yciS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252214.1 1761572 R 990282 CDS YP_005252215.1 378989051 complement(1762030..1762794) 1 NC_016863.1 similar to Escherichia coli non-essential phosphatidylglycerophosphate phosphatase, membrane bound (AAC74360.1); phosphatidylglycerophosphatase B 1762794 pgpB 990282001680 pgpB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphatidylglycerophosphatase B YP_005252215.1 1762030 R 990282 CDS YP_005252216.1 378989052 1762990..1763580 1 NC_016863.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1763580 ribA 990282001681 ribA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GTP cyclohydrolase II YP_005252216.1 1762990 D 990282 CDS YP_005252217.1 378989053 complement(1763636..1766311) 1 NC_016863.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1766311 acnA 990282001682 acnA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aconitate hydratase YP_005252217.1 1763636 R 990282 CDS YP_005252218.1 378989054 complement(1766867..1766995) 1 NC_016863.1 similar to hypothetical protein SC1709 (Pid: YP_216696.1).; hypothetical protein 1766995 990282001683 STMUK_1684 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252218.1 1766867 R 990282 CDS YP_005252219.1 378989055 complement(1767288..1768262) 1 NC_016863.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes; transcriptional regulator CysB 1768262 cysB 990282001684 cysB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator CysB YP_005252219.1 1767288 R 990282 CDS YP_005252220.1 378989056 complement(1768673..1771270) 1 NC_016863.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1771270 topA 990282001685 topA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA topoisomerase I YP_005252220.1 1768673 R 990282 CDS YP_005252221.1 378989057 1771673..1771924 1 NC_016863.1 hypothetical protein 1771924 yciN 990282001686 yciN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252221.1 1771673 D 990282 CDS YP_005252222.1 378989058 complement(1771966..1773012) 1 NC_016863.1 SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 1773012 sohB 990282001687 sohB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative periplasmic protease YP_005252222.1 1771966 R 990282 CDS YP_005252223.1 378989059 1773250..1774011 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC74353.1); short chain dehydrogenase 1774011 yciK 990282001688 yciK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 short chain dehydrogenase YP_005252223.1 1773250 D 990282 CDS YP_005252224.1 378989060 1774008..1774598 1 NC_016863.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1774598 btuR 990282001689 btuR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_005252224.1 1774008 D 990282 CDS YP_005252225.1 378989061 complement(1774685..1775560) 1 NC_016863.1 catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B 1775560 yciL 990282001690 yciL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 23S rRNA pseudouridylate synthase B YP_005252225.1 1774685 R 990282 CDS YP_005252226.1 378989062 complement(1775661..1776281) 1 NC_016863.1 translation factor; hypothetical protein 1776281 yciO 990282001691 yciO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252226.1 1775661 R 990282 CDS YP_005252227.1 378989063 complement(1776289..1777170) 1 NC_016863.1 TrpH protein (SW:TRPH_SALTY); TrpR controlled transcriptional unit in the 5' upstream region of the trp operon; hypothetical protein 1777170 trpH 990282001692 trpH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252227.1 1776289 R 990282 CDS YP_005252228.1 378989064 1777292..1777336 1 NC_016863.1 trp operon leader peptide (SW:LPW_SALTY); trp operon leader peptide 1777336 trpL 990282001693 trpL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 trp operon leader peptide YP_005252228.1 1777292 D 990282 CDS YP_005252229.1 378989065 1777431..1778993 1 NC_016863.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1778993 trpE 990282001694 trpE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anthranilate synthase component I YP_005252229.1 1777431 D 990282 CDS YP_005252230.1 378989066 1778993..1780588 1 NC_016863.1 bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-rib; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1780588 trpD 990282001695 trpD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase YP_005252230.1 1778993 D 990282 CDS YP_005252231.1 378989067 1780592..1781950 1 NC_016863.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1781950 trpF 990282001696 trpF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_005252231.1 1780592 D 990282 CDS YP_005252232.1 378989068 1781960..1783153 1 NC_016863.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1783153 trpB 990282001697 trpB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tryptophan synthase subunit beta YP_005252232.1 1781960 D 990282 CDS YP_005252233.1 378989069 1783153..1783959 1 NC_016863.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1783959 trpA 990282001698 trpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tryptophan synthase subunit alpha YP_005252233.1 1783153 D 990282 CDS YP_005252234.1 378989070 1784439..1784621 1 NC_016863.1 putative cytoplasmic protein 1784621 yciG 990282001699 yciG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252234.1 1784439 D 990282 CDS YP_005252235.1 378989071 1784711..1785214 1 NC_016863.1 similar to Escherichia coli putative structural proteins (AAC74340.1); putative cytoplasmic protein 1785214 yciF 990282001700 yciF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252235.1 1784711 D 990282 CDS YP_005252236.1 378989072 1785288..1785794 1 NC_016863.1 putative cytoplasmic protein 1785794 yciE 990282001701 yciE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252236.1 1785288 D 990282 CDS YP_005252237.1 378989073 1785814..1786692 1 NC_016863.1 putative catalase (gi|7162108); putative catalase 1786692 990282001702 STMUK_1703 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative catalase YP_005252237.1 1785814 D 990282 CDS YP_005252238.1 378989074 complement(1786774..1787412) 1 NC_016863.1 receptor for colicin S4; outer membrane protein W 1787412 ompW 990282001703 ompW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane protein W YP_005252238.1 1786774 R 990282 CDS YP_005252239.1 378989075 1787750..1788154 1 NC_016863.1 similar to Escherichia coli putative ferredoxin (AAC73391.1); putative ferredoxin 1788154 990282001704 STMUK_1705 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ferredoxin YP_005252239.1 1787750 D 990282 CDS YP_005252240.1 378989076 1788180..1788923 1 NC_016863.1 hypothetical protein 1788923 yciC 990282001705 yciC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252240.1 1788180 D 990282 CDS YP_005252241.1 378989077 1788980..1789519 1 NC_016863.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1789519 yciB 990282001706 yciB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 intracellular septation protein A YP_005252241.1 1788980 D 990282 CDS YP_005252242.1 378989078 1789680..1790081 1 NC_016863.1 YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 1790081 yciA 990282001707 yciA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acyl-CoA thioester hydrolase YP_005252242.1 1789680 D 990282 CDS YP_005252243.1 378989079 complement(1790141..1790869) 1 NC_016863.1 membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; transporter 1790869 tonB 990282001708 tonB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transporter YP_005252243.1 1790141 R 990282 CDS YP_005252244.1 378989080 1791093..1791389 1 NC_016863.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1791389 yciI 990282001709 yciI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 YciI-like protein YP_005252244.1 1791093 D 990282 CDS YP_005252245.1 378989081 complement(1791433..1791570) 1 NC_016863.1 similar to hypothetical protein SeSA_A1872 (Pid: YP_002114771.1).; hypothetical protein 1791570 990282001710 STMUK_1711 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252245.1 1791433 R 990282 CDS YP_005252246.1 378989082 1791749..1793209 1 NC_016863.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1793209 cls 990282001711 cls Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cardiolipin synthetase YP_005252246.1 1791749 D 990282 CDS YP_005252247.1 378989083 1793243..1793572 1 NC_016863.1 similar to E. coli orf, hypothetical protein(AAC74330.1); Blastp hit to AAC74330.1 (135 aa); putative cytoplasmic protein 1793572 990282001712 STMUK_1713 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252247.1 1793243 D 990282 CDS YP_005252248.1 378989084 complement(1793620..1794456) 1 NC_016863.1 putative voltage-gated potassium channel 1794456 990282001713 STMUK_1714 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative voltage-gated potassium channel YP_005252248.1 1793620 R 990282 CDS YP_005252249.1 378989085 complement(1794504..1795508) 1 NC_016863.1 oligopeptide transport ATP-binding protein; OppF (SW:OPPF_SALTY); ABC superfamily ATP-binding protein; oligopeptide transport protein 1795508 oppF 990282001714 oppF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 oligopeptide transport protein YP_005252249.1 1794504 R 990282 CDS YP_005252250.1 378989086 complement(1795505..1796512) 1 NC_016863.1 oligopeptide transport ATP-binding protein OppD (SW:OPPD_SALTY); ABC superfamily ATP-binding protein; oligopeptide ABC transporter ATP-binding protein 1796512 oppD 990282001715 oppD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 oligopeptide ABC transporter ATP-binding protein YP_005252250.1 1795505 R 990282 CDS YP_005252251.1 378989087 complement(1796524..1797432) 1 NC_016863.1 oligopeptide transport system permease protein OppC (SW:OPPC_SALTY); ABC superfamily membrane protein; oligopeptide transport protein 1797432 oppC 990282001716 oppC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 oligopeptide transport protein YP_005252251.1 1796524 R 990282 CDS YP_005252252.1 378989088 complement(1797447..1798367) 1 NC_016863.1 oligopeptide transport system permease protein OppB (SW:OPPB_SALTY); ABC superfamily membrane protein; oligopeptide transporter permease 1798367 oppB 990282001717 oppB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 oligopeptide transporter permease YP_005252252.1 1797447 R 990282 CDS YP_005252253.1 378989089 complement(1798489..1800237) 1 NC_016863.1 periplasmic oligopeptide-binding protein precursor (SW:OPPA_SALTY); ABC superfamily periplasmic protein; contains chaperone properties; oligopeptide transport protein 1800237 oppA 990282001718 oppA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 oligopeptide transport protein YP_005252253.1 1798489 R 990282 CDS YP_005252254.1 378989090 1800188..1800502 1 NC_016863.1 putative inner membrane protein 1800502 990282001719 STMUK_1720 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252254.1 1800188 D 990282 CDS YP_005252255.1 378989091 complement(1800885..1801532) 1 NC_016863.1 similar to Escherichia coli putative channel protein (AAC74324.1); MarC family; hypothetical protein 1801532 ychE 990282001720 ychE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252255.1 1800885 R 990282 CDS YP_005252256.1 378989092 1802009..1804687 1 NC_016863.1 similar to Escherichia coli CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase (AAC74323.1); multifunctional alcohol dehydrogenase AdhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1804687 adhE 990282001721 adhE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_005252256.1 1802009 D 990282 CDS YP_005252257.1 378989093 complement(1804884..1805501) 1 NC_016863.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1805501 tdk 990282001722 tdk Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thymidine kinase YP_005252257.1 1804884 R 990282 CDS YP_005252258.1 378989094 1806164..1806577 1 NC_016863.1 DNA-binding protein H-NS; histone-like protein HLP-II; protein H1; protein B1 (SW:HNS_SALTY); HU; BH2; HD; NS; pleiotropic regulator; global DNA-binding transcriptional dual regulator H-NS 1806577 hns 990282001723 hns Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 global DNA-binding transcriptional dual regulator H-NS YP_005252258.1 1806164 D 990282 CDS YP_005252259.1 378989095 complement(1806709..1807617) 1 NC_016863.1 together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalU 1807617 galU 990282001724 galU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UTP--glucose-1-phosphate uridylyltransferase subunit GalU YP_005252259.1 1806709 R 990282 CDS YP_005252260.1 378989096 complement(1807820..1808833) 1 NC_016863.1 similar to Escherichia coli Hnr protein (AAC74317.1); for protein turnover; involved in mouse virulence; response regulator of RpoS 1808833 hnr 990282001725 hnr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 response regulator of RpoS YP_005252260.1 1807820 R 990282 CDS YP_005252261.1 378989097 complement(1808924..1809829) 1 NC_016863.1 hypothetical protein 1809829 ychK 990282001726 ychK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252261.1 1808924 R 990282 CDS YP_005252262.1 378989098 1809940..1810398 1 NC_016863.1 hypothetical protein 1810398 ychJ 990282001727 ychJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252262.1 1809940 D 990282 CDS YP_005252263.1 378989099 1810449..1811291 1 NC_016863.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1811291 purU 990282001728 purU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formyltetrahydrofolate deformylase YP_005252263.1 1810449 D 990282 CDS YP_005252264.1 378989100 complement(1812607..1814136) 1 NC_016863.1 contains TPR repeats; hypothetical protein 1814136 990282001731 STMUK_1732 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252264.1 1812607 R 990282 CDS YP_005252265.1 378989101 complement(1814378..1815055) 1 NC_016863.1 similar to Escherichia coli nitrate reductase 1; cytochrome b(NR); gamma subunit (AAC74311.1); nitrate reductase 1 subunit gamma 1815055 narI 990282001732 narI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrate reductase 1 subunit gamma YP_005252265.1 1814378 R 990282 CDS YP_005252266.1 378989102 complement(1815055..1815765) 1 NC_016863.1 similar to Escherichia coli nitrate reductase 1; delta subunit; assembly function (AAC74310.1); chaperone required for molybdenum cofactor assembly in nitrate reductase 1; nitrate reductase 1 subunit delta 1815765 narJ 990282001733 narJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrate reductase 1 subunit delta YP_005252266.1 1815055 R 990282 CDS YP_005252267.1 378989103 complement(1815762..1817297) 1 NC_016863.1 similar to Escherichia coli nitrate reductase 1; FeS; beta subunit (AAC74309.1); nitrate reductase 1 subunit beta 1817297 narH 990282001734 narH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrate reductase 1 subunit beta YP_005252267.1 1815762 R 990282 CDS YP_005252268.1 378989104 complement(1817294..1821037) 1 NC_016863.1 similar to Escherichia coli nitrate reductase 1; alpha subunit (AAC74308.1); nitrate reductase 1 subunit alpha 1821037 narG 990282001735 narG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrate reductase 1 subunit alpha YP_005252268.1 1817294 R 990282 CDS YP_005252269.1 378989105 complement(1821425..1822822) 1 NC_016863.1 similar to Escherichia coli nitrite extrusion protein (AAC74307.1); MFS superfamily; nitrite extrusion protein 1822822 narK 990282001736 narK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrite extrusion protein YP_005252269.1 1821425 R 990282 CDS YP_005252270.1 378989106 1823163..1824959 1 NC_016863.1 similar to Escherichia coli nitrate/nitrate sensor histidine protein kinase acts on NarL regulator (AAC74306.1); in two component regulatory system; senses nitrate/nitrite; regulates anaerobic respiration and fermentation; nitrate/nitrite sensor protein NarX 1824959 narX 990282001737 narX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrate/nitrite sensor protein NarX YP_005252270.1 1823163 D 990282 CDS YP_005252271.1 378989107 1824952..1825602 1 NC_016863.1 two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL 1825602 narL 990282001738 narL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator NarL YP_005252271.1 1824952 D 990282 CDS YP_005252272.1 378989108 complement(1825603..1827027) 1 NC_016863.1 similar to Escherichia coli putative factor (AAC74304.1); hypothetical protein 1827027 ychP 990282001739 ychP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252272.1 1825603 R 990282 CDS YP_005252273.1 378989109 1827204..1827557 1 NC_016863.1 putative ACR involved in intracellular sulfur reduction; putative sulfur reduction protein 1827557 ychN 990282001740 ychN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sulfur reduction protein YP_005252273.1 1827204 D 990282 CDS YP_005252274.1 378989110 complement(1827637..1827867) 1 NC_016863.1 in Escherichia coli this protein putatively regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator 1827867 chaB 990282001741 chaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cation transport regulator YP_005252274.1 1827637 R 990282 CDS YP_005252275.1 378989111 1828134..1829234 1 NC_016863.1 similar to Escherichia coli sodium-calcium/proton antiporter (AAC74300.1); CaCA family; calcium/sodium:proton antiporter 1829234 chaA 990282001742 chaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 calcium/sodium:proton antiporter YP_005252275.1 1828134 D 990282 CDS YP_005252276.1 378989112 complement(1829288..1830142) 1 NC_016863.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1830142 kdsA 990282001743 kdsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-dehydro-3-deoxyphosphooctonate aldolase YP_005252276.1 1829288 R 990282 CDS YP_005252277.1 378989113 complement(1830180..1830989) 1 NC_016863.1 putative transcriptional regulator 1830989 ychA 990282001744 ychA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252277.1 1830180 R 990282 CDS YP_005252278.1 378989114 complement(1830993..1831382) 1 NC_016863.1 regulation of invasion genes; (gi|4887121); putative transcriptional regulator 1831382 sirC 990282001745 sirC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252278.1 1830993 R 990282 CDS YP_005252279.1 378989115 complement(1831379..1832212) 1 NC_016863.1 HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1832212 hemK 990282001746 hemK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_005252279.1 1831379 R 990282 CDS YP_005252280.1 378989116 complement(1832212..1833294) 1 NC_016863.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1833294 prfA 990282001747 prfA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptide chain release factor 1 YP_005252280.1 1832212 R 990282 CDS YP_005252281.1 378989117 complement(1833335..1834591) 1 NC_016863.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tet; glutamyl-tRNA reductase 1834591 hemA 990282001748 hemA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamyl-tRNA reductase YP_005252281.1 1833335 R 990282 CDS YP_005252282.1 378989118 1834905..1835528 1 NC_016863.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1835528 lolB 990282001749 lolB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane lipoprotein LolB YP_005252282.1 1834905 D 990282 CDS YP_005252283.1 378989119 1835525..1836376 1 NC_016863.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1836376 ipk 990282001750 ipk Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_005252283.1 1835525 D 990282 CDS YP_005252284.1 378989120 1836642..1837589 1 NC_016863.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1837589 prsA 990282001751 prsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribose-phosphate pyrophosphokinase YP_005252284.1 1836642 D 990282 CDS YP_005252285.1 378989121 1837738..1839399 1 NC_016863.1 putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM 1839399 ychM 990282001752 ychM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sulfate transporter YchM YP_005252285.1 1837738 D 990282 CDS YP_005252286.1 378989122 complement(1839444..1839722) 1 NC_016863.1 YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; hypothetical protein 1839722 ychH 990282001753 ychH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252286.1 1839444 R 990282 CDS YP_005252287.1 378989123 1839974..1840582 1 NC_016863.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1840582 pth 990282001754 pth Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptidyl-tRNA hydrolase YP_005252287.1 1839974 D 990282 CDS YP_005252288.1 378989124 1840699..1841790 1 NC_016863.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the tra; GTP-dependent nucleic acid-binding protein EngD 1841790 ychF 990282001755 ychF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GTP-dependent nucleic acid-binding protein EngD YP_005252288.1 1840699 D 990282 CDS YP_005252289.1 378989125 complement(1841949..1843214) 1 NC_016863.1 putative cytoplasmic protein 1843214 990282001756 STMUK_1757 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252289.1 1841949 R 990282 CDS YP_005252290.1 378989126 1843709..1844827 1 NC_016863.1 similar to Escherichia coli hydrogenase-1 small subunit (AAC74057.1); hydrogenase-1 small subunit 1844827 990282001757 STMUK_1758 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase-1 small subunit YP_005252290.1 1843709 D 990282 CDS YP_005252291.1 378989127 1844824..1846617 1 NC_016863.1 involved in hydrogen cycling during fermentative growth; hydrogenase 1 large subunit 1846617 990282001758 STMUK_1759 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase 1 large subunit YP_005252291.1 1844824 D 990282 CDS YP_005252292.1 378989128 1846636..1847367 1 NC_016863.1 similar to Escherichia coli probable Ni/Fe hydrogenase 1 b-type cytochrome subunit (AAC74059.1); hydrogenase 1 b-type cytochrome subunit 1847367 990282001759 STMUK_1760 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase 1 b-type cytochrome subunit YP_005252292.1 1846636 D 990282 CDS YP_005252293.1 378989129 1847364..1847960 1 NC_016863.1 HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 1847960 990282001760 STMUK_1761 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase 1 maturation protease YP_005252293.1 1847364 D 990282 CDS YP_005252294.1 378989130 1847950..1848354 1 NC_016863.1 involved in processing hydrogenase proteins HyaA and HyaB; hydrogenase-1 operon protein HyaE 1848354 990282001761 STMUK_1762 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase-1 operon protein HyaE YP_005252294.1 1847950 D 990282 CDS YP_005252295.1 378989131 1848351..1849199 1 NC_016863.1 similar to Escherichia coli nickel incorporation into hydrogenase-1 proteins (AAC74062.1); putative hydrogenase-1 protein 1849199 990282001762 STMUK_1763 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrogenase-1 protein YP_005252295.1 1848351 D 990282 CDS YP_005252296.1 378989132 1849274..1850818 1 NC_016863.1 similar to Escherichia coli probable third cytochrome oxidase subunit I (AAC74063.1); putative cytochrome oxidase subunit I 1850818 990282001763 STMUK_1764 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytochrome oxidase subunit I YP_005252296.1 1849274 D 990282 CDS YP_005252297.1 378989133 1850830..1851966 1 NC_016863.1 similar to Escherichia coli probable third cytochrome oxidase subunit II (AAC74064.1); putative cytochrome oxidase subunit II 1851966 990282001764 STMUK_1765 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytochrome oxidase subunit II YP_005252297.1 1850830 D 990282 CDS YP_005252298.1 378989134 1851979..1852068 1 NC_016863.1 expressed during stationary phase; membrane protein 1852068 990282001765 STMUK_1766 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 membrane protein YP_005252298.1 1851979 D 990282 CDS YP_005252299.1 378989135 1852412..1853737 1 NC_016863.1 similar to Escherichia coli NADP-specific glutamate dehydrogenase (AAC74831.1); glutamate dehydrogenase-like protein 1853737 990282001766 STMUK_1767 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamate dehydrogenase-like protein YP_005252299.1 1852412 D 990282 CDS YP_005252300.1 378989136 1853951..1855663 1 NC_016863.1 periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 1855663 treA 990282001767 treA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 trehalase YP_005252300.1 1853951 D 990282 CDS YP_005252301.1 378989137 complement(1855726..1855980) 1 NC_016863.1 putative transglycosylase-associated protein 1855980 ymgE 990282001768 ymgE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transglycosylase-associated protein YP_005252301.1 1855726 R 990282 CDS YP_005252302.1 378989138 1856149..1856883 1 NC_016863.1 putative inner membrane protein 1856883 ycgR 990282001769 ycgR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252302.1 1856149 D 990282 CDS YP_005252303.1 378989139 complement(1856897..1857508) 1 NC_016863.1 similar to Escherichia coli murein transglycosylase E (AAC74277.1); membrane-bound lytic murein transglycosylase E 1857508 emtA 990282001770 emtA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 membrane-bound lytic murein transglycosylase E YP_005252303.1 1856897 R 990282 CDS YP_005252304.1 378989140 1857679..1858593 1 NC_016863.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 1858593 ldcA 990282001771 ldcA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L,D-carboxypeptidase A YP_005252304.1 1857679 D 990282 CDS YP_005252305.1 378989141 1858690..1860423 1 NC_016863.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 1860423 ycgO 990282001772 ycgO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 potassium/proton antiporter YP_005252305.1 1858690 D 990282 CDS YP_005252306.1 378989142 complement(1860486..1861556) 1 NC_016863.1 catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase 1861556 dadX 990282001773 dadX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alanine racemase YP_005252306.1 1860486 R 990282 CDS YP_005252307.1 378989143 complement(1861570..1862868) 1 NC_016863.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 1862868 dadA 990282001774 dadA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-amino acid dehydrogenase small subunit YP_005252307.1 1861570 R 990282 CDS YP_005252308.1 378989144 1863191..1864723 1 NC_016863.1 similar to Escherichia coli putative sporulation protein (AAC74272.1); SpoVR family protein 1864723 ycgB 990282001775 ycgB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 SpoVR family protein YP_005252308.1 1863191 D 990282 CDS YP_005252309.1 378989145 complement(1864770..1865489) 1 NC_016863.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 1865489 fadR 990282001776 fadR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fatty acid metabolism regulator YP_005252309.1 1864770 R 990282 CDS YP_005252310.1 378989146 1865709..1867253 1 NC_016863.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1867253 nhaB 990282001777 nhaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sodium/proton antiporter YP_005252310.1 1865709 D 990282 CDS YP_005252311.1 378989147 1867395..1867925 1 NC_016863.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1867925 dsbB 990282001778 dsbB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 disulfide bond formation protein B YP_005252311.1 1867395 D 990282 CDS YP_005252312.1 378989148 1868034..1868375 1 NC_016863.1 putative cytoplasmic protein 1868375 990282001779 STMUK_1780 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252312.1 1868034 D 990282 CDS YP_005252313.1 378989149 complement(1868447..1868620) 1 NC_016863.1 putative cytoplasmic protein 1868620 990282001780 STMUK_1781 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252313.1 1868447 R 990282 CDS YP_005252314.1 378989150 complement(1868812..1868949) 1 NC_016863.1 putative cytoplasmic protein 1868949 990282001781 STMUK_1782 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252314.1 1868812 R 990282 CDS YP_005252315.1 378989151 complement(1869301..1869762) 1 NC_016863.1 hypothetical protein 1869762 ycgN 990282001782 ycgN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252315.1 1869301 R 990282 CDS YP_005252316.1 378989152 complement(1869840..1870499) 1 NC_016863.1 similar to Escherichia coli putative isomerase (AAC74264.1); FAA; hypothetical protein 1870499 ycgM 990282001783 ycgM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252316.1 1869840 R 990282 CDS YP_005252317.1 378989153 complement(1870549..1870881) 1 NC_016863.1 putative cytoplasmic protein 1870881 ycgL 990282001784 ycgL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252317.1 1870549 R 990282 CDS YP_005252318.1 378989154 1870968..1871675 1 NC_016863.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1871675 minC 990282001785 minC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 septum formation inhibitor YP_005252318.1 1870968 D 990282 CDS YP_005252319.1 378989155 1871699..1872511 1 NC_016863.1 ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 1872511 minD 990282001786 minD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division inhibitor MinD YP_005252319.1 1871699 D 990282 CDS YP_005252320.1 378989156 1872515..1872781 1 NC_016863.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1872781 minE 990282001787 minE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division topological specificity factor MinE YP_005252320.1 1872515 D 990282 CDS YP_005252321.1 378989157 complement(1872903..1874030) 1 NC_016863.1 similar to Escherichia coli RNase D; processes tRNA precursor (AAC74874.1); ribonuclease D 1874030 rnd 990282001788 rnd Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonuclease D YP_005252321.1 1872903 R 990282 CDS YP_005252322.1 378989158 complement(1874166..1874624) 1 NC_016863.1 transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 1874624 tnpA_6 990282001789 tnpA_6 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transposase for IS200 YP_005252322.1 1874166 R 990282 CDS YP_005252323.1 378989159 complement(1874815..1876500) 1 NC_016863.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1876500 fadD 990282001790 fadD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 long-chain-fatty-acid--CoA ligase YP_005252323.1 1874815 R 990282 CDS YP_005252324.1 378989160 complement(1876705..1877286) 1 NC_016863.1 similar to Escherichia coli putative outer membrane protein (AAC74876.1); putative outer membrane protein 1877286 slp 990282001791 slp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005252324.1 1876705 R 990282 CDS YP_005252325.1 378989161 complement(1877358..1878053) 1 NC_016863.1 putative molecular chaperone 1878053 yeaZ 990282001792 yeaZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative molecular chaperone YP_005252325.1 1877358 R 990282 CDS YP_005252326.1 378989162 complement(1878111..1880021) 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC74878.1); putative DNA helicase 1880021 yoaA 990282001793 yoaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA helicase YP_005252326.1 1878111 R 990282 CDS YP_005252327.1 378989163 1880152..1880496 1 NC_016863.1 putative translation initiation inhibitor 1880496 yoaB 990282001794 yoaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative translation initiation inhibitor YP_005252327.1 1880152 D 990282 CDS YP_005252328.1 378989164 complement(1880502..1880681) 1 NC_016863.1 hypothetical protein in fadD-pabB intergenic region (SW:YOAH_SALTY); hypothetical protein 1880681 yoaH 990282001795 yoaH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252328.1 1880502 R 990282 CDS YP_005252329.1 378989165 1880762..1882126 1 NC_016863.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I 1882126 pabB 990282001796 pabB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 para-aminobenzoate synthase component I YP_005252329.1 1880762 D 990282 CDS YP_005252330.1 378989166 1882130..1882708 1 NC_016863.1 hypothetical protein in pabB-sdaA intergenic region (SW:YEAB_SALTY); hypothetical protein 1882708 yeaB 990282001797 yeaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252330.1 1882130 D 990282 CDS YP_005252331.1 378989167 1882972..1884336 1 NC_016863.1 similar to Escherichia coli L-serine deaminase (AAC74884.1); L-serine deaminase I/L-threonine deaminase I 1884336 sdaA 990282001798 sdaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-serine deaminase I/L-threonine deaminase I YP_005252331.1 1882972 D 990282 CDS YP_005252332.1 378989168 1884372..1886075 1 NC_016863.1 diguanylate cyclase 1886075 990282001799 STMUK_1800 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 diguanylate cyclase YP_005252332.1 1884372 D 990282 CDS YP_005252333.1 378989169 complement(1886097..1887656) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC74886.1); putative inner membrane protein 1887656 yoaE 990282001800 yoaE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252333.1 1886097 R 990282 CDS YP_005252334.1 378989170 complement(1887644..1887979) 1 NC_016863.1 putative cytoplasmic protein 1887979 990282001801 STMUK_1802 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252334.1 1887644 R 990282 CDS YP_005252335.1 378989171 1888129..1889097 1 NC_016863.1 similar to Escherichia coli PTS enzyme IIAB; mannose-specific (AAC74887.1); mannose-specific enzyme IIAB 1889097 manX 990282001802 manX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 mannose-specific enzyme IIAB YP_005252335.1 1888129 D 990282 CDS YP_005252336.1 378989172 1889150..1889950 1 NC_016863.1 similar to Escherichia coli PTS enzyme IIC; mannose-specific (AAC74888.1); mannose-specific enzyme IIC 1889950 manY 990282001803 manY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 mannose-specific enzyme IIC YP_005252336.1 1889150 D 990282 CDS YP_005252337.1 378989173 1889954..1890814 1 NC_016863.1 hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 1890814 manZ 990282001804 manZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system mannose-specific transporter subunit IID YP_005252337.1 1889954 D 990282 CDS YP_005252338.1 378989174 1891686..1892306 1 NC_016863.1 membrane protein YebN; hypothetical protein 1892306 yebN 990282001806 yebN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252338.1 1891686 D 990282 CDS YP_005252339.1 378989175 complement(1892303..1893112) 1 NC_016863.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 1893112 rrmA 990282001807 rrmA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 23S rRNA methyltransferase A YP_005252339.1 1892303 R 990282 CDS YP_005252340.1 378989176 complement(1893178..1894923) 1 NC_016863.1 similar to Escherichia coli septum formation; penicillin-binding protein 3; peptidoglycan synthetase (AAC73195.1); putative penicillin-binding protein 3 1894923 990282001808 STMUK_1809 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative penicillin-binding protein 3 YP_005252340.1 1893178 R 990282 CDS YP_005252341.1 378989177 complement(1895143..1895352) 1 NC_016863.1 cold shock-like protein CspC (SW:CSPC_SALTY); multicopy suppresses mukB mutants; putative regulator; cold shock-like protein CspC 1895352 cspC 990282001809 cspC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cold shock-like protein CspC YP_005252341.1 1895143 R 990282 CDS YP_005252342.1 378989178 complement(1895365..1895508) 1 NC_016863.1 putative cytoplasmic protein 1895508 yobF 990282001810 yobF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252342.1 1895365 R 990282 CDS YP_005252343.1 378989179 complement(1896157..1896444) 1 NC_016863.1 putative periplasmic protein; hypothetical protein 1896444 990282001811 STMUK_1812 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252343.1 1896157 R 990282 CDS YP_005252344.1 378989180 complement(1896515..1896658) 1 NC_016863.1 hypothetical protein 1896658 yobG 990282001812 yobG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252344.1 1896515 R 990282 CDS YP_005252345.1 378989181 1896816..1897055 1 NC_016863.1 hypothetical protein 1897055 990282001813 STMUK_1814 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252345.1 1896816 D 990282 CDS YP_005252346.1 378989182 complement(1897267..1898058) 1 NC_016863.1 similar to Escherichia coli putative regulator (AAC74897.1); IclR family; putative transcriptional repressor 1898058 kdgR 990282001814 kdgR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional repressor YP_005252346.1 1897267 R 990282 CDS YP_005252347.1 378989183 1898234..1899607 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC74898.1); putative transport protein 1899607 990282001815 STMUK_1816 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005252347.1 1898234 D 990282 CDS YP_005252348.1 378989184 complement(1899655..1900536) 1 NC_016863.1 putative metalloprotease; heat shock protein HtpX 1900536 htpX 990282001816 htpX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 heat shock protein HtpX YP_005252348.1 1899655 R 990282 CDS YP_005252349.1 378989185 complement(1900730..1902778) 1 NC_016863.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1902778 prc 990282001817 prc Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 carboxy-terminal protease YP_005252349.1 1900730 R 990282 CDS YP_005252350.1 378989186 complement(1902798..1903484) 1 NC_016863.1 affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 1903484 proQ 990282001818 proQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative solute/DNA competence effector YP_005252350.1 1902798 R 990282 CDS YP_005252351.1 378989187 complement(1903582..1904166) 1 NC_016863.1 contains putative GAF domain; putative nucleotide-binding protein 1904166 yebR 990282001819 yebR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative nucleotide-binding protein YP_005252351.1 1903582 R 990282 CDS YP_005252352.1 378989188 1904208..1905491 1 NC_016863.1 putative inner membrane protein 1905491 yebS 990282001820 yebS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252352.1 1904208 D 990282 CDS YP_005252353.1 378989189 1905454..1908093 1 NC_016863.1 putative inner membrane protein 1908093 990282001821 STMUK_1822 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252353.1 1905454 D 990282 CDS YP_005252354.1 378989190 1908171..1909610 1 NC_016863.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1909610 yebU 990282001822 yebU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_005252354.1 1908171 D 990282 CDS YP_005252355.1 378989191 1909725..1909964 1 NC_016863.1 putative cytoplasmic protein 1909964 990282001823 STMUK_1824 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252355.1 1909725 D 990282 CDS YP_005252356.1 378989192 1910075..1910266 1 NC_016863.1 putative inner membrane lipoprotein 1910266 yebW 990282001824 yebW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane lipoprotein YP_005252356.1 1910075 D 990282 CDS YP_005252357.1 378989193 complement(1910285..1910935) 1 NC_016863.1 Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine protein phosphatase 1 1910935 pphA 990282001825 pphA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 serine/threonine protein phosphatase 1 YP_005252357.1 1910285 R 990282 CDS YP_005252358.1 378989194 complement(1910922..1911038) 1 NC_016863.1 hypothetical protein 1911038 990282001826 STMUK_1827 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252358.1 1910922 R 990282 CDS YP_005252359.1 378989195 complement(1911159..1911323) 1 NC_016863.1 putative inner membrane protein 1911323 990282001827 STMUK_1828 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252359.1 1911159 R 990282 CDS YP_005252360.1 378989196 complement(1911608..1912330) 1 NC_016863.1 SopE2 (gi|9651642); invasion-associated protein; secreted by SPI-1; interacts with chaperone InvB; guanine nucleotide exchange factor for Cdc42; activates Cdc42 which results in actin cytoskeleton rearrangements and internalization; type III-secreted effector protein 1912330 sopE2 990282001828 sopE2 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type III-secreted effector protein YP_005252360.1 1911608 R 990282 CDS YP_005252361.1 378989197 1913014..1913409 1 NC_016863.1 putative cytoplasmic protein 1913409 990282001829 STMUK_1830 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252361.1 1913014 D 990282 CDS YP_005252362.1 378989198 1913739..1914215 1 NC_016863.1 similar to hypothetical protein STM1856.1N (Pid: NP_945162.1).; hypothetical protein 1914215 990282001830 STMUK_1831 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252362.1 1913739 D 990282 CDS YP_005252363.1 378989199 complement(1914603..1915022) 1 NC_016863.1 putative acetyltransferase 1915022 990282001831 STMUK_1832 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acetyltransferase YP_005252363.1 1914603 R 990282 CDS YP_005252364.1 378989200 1915392..1915661 1 NC_016863.1 putative cytoplasmic protein 1915661 990282001832 STMUK_1833 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252364.1 1915392 D 990282 CDS YP_005252365.1 378989201 1915827..1915967 1 NC_016863.1 putative cytoplasmic protein 1915967 990282001833 STMUK_1834 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252365.1 1915827 D 990282 CDS YP_005252366.1 378989202 complement(1916304..1916450) 1 NC_016863.1 similar to putative transposase (Pid: YP_002637446.1).; hypothetical protein 1916450 990282001834 STMUK_1835 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252366.1 1916304 R 990282 CDS YP_005252367.1 378989203 complement(1916450..1917307) 1 NC_016863.1 putative transposase 1917307 990282001835 STMUK_1836 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transposase YP_005252367.1 1916450 R 990282 CDS YP_005252368.1 378989204 1917431..1917799 1 NC_016863.1 similar to E. coli prophage e14 integrase(AAC74224.1); Blastp hit to AAC74224.1 (375 aa); putative cytoplasmic protein 1917799 990282001836 STMUK_1837 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252368.1 1917431 D 990282 CDS YP_005252369.1 378989205 1919103..1920017 1 NC_016863.1 PagO protein (SW:PAGO_SALTY); PhoPQ-activated gene; integral membrane protein 1920017 pagO 990282001837 pagO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 integral membrane protein YP_005252369.1 1919103 D 990282 CDS YP_005252370.1 378989206 1920150..1920308 1 NC_016863.1 putative inner membrane protein 1920308 990282001838 STMUK_1839 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252370.1 1920150 D 990282 CDS YP_005252371.1 378989207 1920318..1920932 1 NC_016863.1 putative inner membrane protein 1920932 990282001839 STMUK_1840 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252371.1 1920318 D 990282 CDS YP_005252372.1 378989208 complement(1921259..1921384) 1 NC_016863.1 similar to E. coli inversion of adjacent DNA; atlocus of e14 element (AAC74242.1); Blastp hit toAAC74242.1 (184 aa); putative cytoplasmic protein 1921384 990282001840 STMUK_1841 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252372.1 1921259 R 990282 CDS YP_005252373.1 378989209 complement(1921381..1921557) 1 NC_016863.1 similar to hypothetical protein SPAB_01328 (Pid: YP_001587571.1).; hypothetical protein 1921557 990282001841 STMUK_1842 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252373.1 1921381 R 990282 CDS YP_005252374.1 378989210 1922104..1922262 1 NC_016863.1 hypothetical protein 1922262 990282001842 STMUK_1843 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252374.1 1922104 D 990282 CDS YP_005252375.1 378989211 1922775..1922975 1 NC_016863.1 PhoPQ-activated gene (gi|2582047); PagK 1922975 pagK 990282001843 pagK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PagK YP_005252375.1 1922775 D 990282 CDS YP_005252376.1 378989212 complement(1923072..1923953) 1 NC_016863.1 phage tail assembly protein (gi|2460256); phage-tail assembly-like protein 1923953 mig3 990282001844 mig3 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phage-tail assembly-like protein YP_005252376.1 1923072 R 990282 CDS YP_005252377.1 378989213 complement(1924108..1924371) 1 NC_016863.1 hypothetical protein 1924371 990282001845 STMUK_1846 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252377.1 1924108 R 990282 CDS YP_005252378.1 378989214 1924679..1924846 1 NC_016863.1 lytic enzyme 1924846 990282001846 STMUK_1847 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lytic enzyme YP_005252378.1 1924679 D 990282 CDS YP_005252379.1 378989215 complement(1925103..1925636) 1 NC_016863.1 phage-tail assembly-like protein 1925636 990282001847 STMUK_1848 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phage-tail assembly-like protein YP_005252379.1 1925103 R 990282 CDS YP_005252380.1 378989216 complement(1925690..1925977) 1 NC_016863.1 hypothetical protein 1925977 990282001848 STMUK_1849 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252380.1 1925690 R 990282 CDS YP_005252381.1 378989217 1926110..1926604 1 NC_016863.1 exoVIII; similar to Escherichia coli exonuclease VIII; ds DNA exonuclease; 5'-3' specific (AAC74432.1); RecE-like protein 1926604 990282001849 STMUK_1850 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 RecE-like protein YP_005252381.1 1926110 D 990282 CDS YP_005252382.1 378989218 1926622..1927518 1 NC_016863.1 similar to E. coli prophage e14 integrase(AAC74224.1); Blastp hit to AAC74224.1 (375 aa); putative phage integrase protein 1927518 990282001850 STMUK_1851 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage integrase protein YP_005252382.1 1926622 D 990282 CDS YP_005252383.1 378989219 complement(1927715..1927834) 1 NC_016863.1 putative cytoplasmic protein 1927834 990282001851 STMUK_1852 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252383.1 1927715 R 990282 CDS YP_005252384.1 378989220 complement(1927892..1928245) 1 NC_016863.1 putative periplasmic protein; hypothetical protein 1928245 990282001852 STMUK_1853 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252384.1 1927892 R 990282 CDS YP_005252385.1 378989221 complement(1928262..1929137) 1 NC_016863.1 similar to Escherichia coli putative resistance protein (AAC74910.1); putative inner membrane protein 1929137 990282001853 STMUK_1854 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252385.1 1928262 R 990282 CDS YP_005252386.1 378989222 complement(1929138..1929512) 1 NC_016863.1 similar to CopC; hypothetical protein 1929512 yobA 990282001854 yobA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252386.1 1929138 R 990282 CDS YP_005252387.1 378989223 1929650..1929880 1 NC_016863.1 similar to Escherichia coli DNA polymerase III theta subunit (AAC74912.1); DNA polymerase III subunit theta 1929880 holE 990282001855 holE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase III subunit theta YP_005252387.1 1929650 D 990282 CDS YP_005252388.1 378989224 1929988..1930644 1 NC_016863.1 putative amidohydrolase 1930644 990282001856 STMUK_1857 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative amidohydrolase YP_005252388.1 1929988 D 990282 CDS YP_005252389.1 378989225 1930668..1931366 1 NC_016863.1 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 1931366 exoX 990282001857 exoX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exodeoxyribonuclease X YP_005252389.1 1930668 D 990282 CDS YP_005252390.1 378989226 complement(1931401..1933452) 1 NC_016863.1 PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 1933452 ptrB 990282001858 ptrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 protease 2 YP_005252390.1 1931401 R 990282 CDS YP_005252391.1 378989227 complement(1933665..1934324) 1 NC_016863.1 putative inner membrane protein 1934324 yebE 990282001859 yebE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252391.1 1933665 R 990282 CDS YP_005252392.1 378989228 complement(1934418..1934771) 1 NC_016863.1 secreted protein; unknown function; hypothetical protein 1934771 yebF 990282001860 yebF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252392.1 1934418 R 990282 CDS YP_005252393.1 378989229 complement(1934839..1935129) 1 NC_016863.1 in SOS regulon; dependent on cyclic AMP and H-NS; DNA damage-inducible protein YebG 1935129 yebG 990282001861 yebG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA damage-inducible protein YebG YP_005252393.1 1934839 R 990282 CDS YP_005252394.1 378989230 1935260..1936438 1 NC_016863.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1936438 purT 990282001862 purT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoribosylglycinamide formyltransferase 2 YP_005252394.1 1935260 D 990282 CDS YP_005252395.1 378989231 complement(1936538..1937179) 1 NC_016863.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1937179 eda 990282001863 eda Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_005252395.1 1936538 R 990282 CDS YP_005252396.1 378989232 complement(1937217..1939028) 1 NC_016863.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1939028 edd 990282001864 edd Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphogluconate dehydratase YP_005252396.1 1937217 R 990282 CDS YP_005252397.1 378989233 complement(1939263..1940738) 1 NC_016863.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1940738 zwf 990282001865 zwf Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucose-6-phosphate 1-dehydrogenase YP_005252397.1 1939263 R 990282 CDS YP_005252398.1 378989234 1941080..1941949 1 NC_016863.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 1941949 yebK 990282001866 yebK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator HexR YP_005252398.1 1941080 D 990282 CDS YP_005252399.1 378989235 1942073..1943515 1 NC_016863.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1943515 pykA 990282001867 pykA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyruvate kinase YP_005252399.1 1942073 D 990282 CDS YP_005252400.1 378989236 complement(1943588..1944559) 1 NC_016863.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 1944559 msbB 990282001868 msbB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_005252400.1 1943588 R 990282 CDS YP_005252401.1 378989237 complement(1944676..1945995) 1 NC_016863.1 hypothetical protein 1945995 yebA 990282001869 yebA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252401.1 1944676 R 990282 CDS YP_005252402.1 378989238 complement(1946011..1947012) 1 NC_016863.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic protein 1947012 yebL 990282001870 yebL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 high-affinity zinc transporter periplasmic protein YP_005252402.1 1946011 R 990282 CDS YP_005252403.1 378989239 1946983..1947789 1 NC_016863.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 1947789 yebM 990282001871 yebM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 high-affinity zinc transporter ATPase YP_005252403.1 1946983 D 990282 CDS YP_005252404.1 378989240 1947786..1948571 1 NC_016863.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane protein 1948571 yebI 990282001872 yebI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 high-affinity zinc transporter membrane protein YP_005252404.1 1947786 D 990282 CDS YP_005252405.1 378989241 complement(1948650..1949660) 1 NC_016863.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; Holliday junction DNA helicase RuvB 1949660 ruvB 990282001873 ruvB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Holliday junction DNA helicase RuvB YP_005252405.1 1948650 R 990282 CDS YP_005252406.1 378989242 complement(1949669..1950280) 1 NC_016863.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1950280 ruvA 990282001874 ruvA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Holliday junction DNA helicase RuvA YP_005252406.1 1949669 R 990282 CDS YP_005252407.1 378989243 1952222..1952821 1 NC_016863.1 hypothetical protein 1952821 yebB 990282001876 yebB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252407.1 1952222 D 990282 CDS YP_005252408.1 378989244 complement(1952823..1953344) 1 NC_016863.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by; Holliday junction resolvase 1953344 ruvC 990282001877 ruvC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Holliday junction resolvase YP_005252408.1 1952823 R 990282 CDS YP_005252409.1 378989245 complement(1953381..1954121) 1 NC_016863.1 hypothetical protein 1954121 yebC 990282001878 yebC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252409.1 1953381 R 990282 CDS YP_005252410.1 378989246 complement(1954151..1954603) 1 NC_016863.1 converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase 1954603 ntpA 990282001879 ntpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dATP pyrophosphohydrolase YP_005252410.1 1954151 R 990282 CDS YP_005252411.1 378989247 complement(1954706..1956478) 1 NC_016863.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1956478 aspS 990282001880 aspS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aspartyl-tRNA synthetase YP_005252411.1 1954706 R 990282 CDS YP_005252412.1 378989248 1956803..1957369 1 NC_016863.1 hypothetical protein 1957369 yecD 990282001881 yecD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252412.1 1956803 D 990282 CDS YP_005252413.1 378989249 1957366..1958184 1 NC_016863.1 hypothetical protein 1958184 yecE 990282001882 yecE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252413.1 1957366 D 990282 CDS YP_005252414.1 378989250 1958237..1958632 1 NC_016863.1 putative inner membrane protein 1958632 yecN 990282001883 yecN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252414.1 1958237 D 990282 CDS YP_005252415.1 378989251 1958673..1959416 1 NC_016863.1 putative SAM-dependent methyltransferase 1959416 yecO 990282001884 yecO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative SAM-dependent methyltransferase YP_005252415.1 1958673 D 990282 CDS YP_005252416.1 378989252 1959413..1960384 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC74941.1); hypothetical protein 1960384 yecP 990282001885 yecP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252416.1 1959413 D 990282 CDS YP_005252417.1 378989253 complement(1960620..1961366) 1 NC_016863.1 similar to Escherichia coli copper homeostasis protein (AAC74944.1); copper homeostasis protein CutC 1961366 cutC 990282001886 cutC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 copper homeostasis protein CutC YP_005252417.1 1960620 R 990282 CDS YP_005252418.1 378989254 complement(1961386..1961955) 1 NC_016863.1 hypothetical protein 1961955 yecM 990282001887 yecM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252418.1 1961386 R 990282 CDS YP_005252419.1 378989255 1962192..1963925 1 NC_016863.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1963925 argS 990282001888 argS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 arginyl-tRNA synthetase YP_005252419.1 1962192 D 990282 CDS YP_005252420.1 378989256 1964114..1965985 1 NC_016863.1 penicillin-binding protein 2; PBP-2 (SW:PBP2_SALTY); putative penicillin-binding protein 1965985 990282001889 STMUK_1890 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative penicillin-binding protein YP_005252420.1 1964114 D 990282 CDS YP_005252421.1 378989257 complement(1966039..1967178) 1 NC_016863.1 putative cytoplasmic protein 1967178 990282001890 STMUK_1891 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252421.1 1966039 R 990282 CDS YP_005252422.1 378989258 complement(1967415..1967807) 1 NC_016863.1 flagellar protein FlhE precursor (SW:FLHE_SALTY); flagellar protein 1967807 flhE 990282001891 flhE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar protein YP_005252422.1 1967415 R 990282 CDS YP_005252423.1 378989259 complement(1967807..1969885) 1 NC_016863.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1969885 flhA 990282001892 flhA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar biosynthesis protein FlhA YP_005252423.1 1967807 R 990282 CDS YP_005252424.1 378989260 complement(1969878..1971029) 1 NC_016863.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1971029 flhB 990282001893 flhB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar biosynthesis protein FlhB YP_005252424.1 1969878 R 990282 CDS YP_005252425.1 378989261 complement(1971223..1971867) 1 NC_016863.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ 1971867 cheZ 990282001894 cheZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chemotaxis regulator CheZ YP_005252425.1 1971223 R 990282 CDS YP_005252426.1 378989262 complement(1971878..1972267) 1 NC_016863.1 chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; chemotaxis regulatory protein CheY 1972267 cheY 990282001895 cheY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chemotaxis regulatory protein CheY YP_005252426.1 1971878 R 990282 CDS YP_005252427.1 378989263 complement(1972285..1973334) 1 NC_016863.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1973334 cheB 990282001896 cheB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chemotaxis-specific methylesterase YP_005252427.1 1972285 R 990282 CDS YP_005252428.1 378989264 complement(1973331..1974197) 1 NC_016863.1 methylates the MCP; chemotaxis methyltransferase CheR 1974197 cheR 990282001897 cheR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chemotaxis methyltransferase CheR YP_005252428.1 1973331 R 990282 CDS YP_005252429.1 378989265 complement(1974351..1976012) 1 NC_016863.1 methyl-accepting chemotaxis protein II; MCP-II (SW:MCP2_SALTY); aspartate sensor-receptor; methyl accepting chemotaxis protein II 1976012 cheM 990282001898 cheM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 methyl accepting chemotaxis protein II YP_005252429.1 1974351 R 990282 CDS YP_005252430.1 378989266 complement(1976249..1976752) 1 NC_016863.1 chemotaxis protein CheW (SW:CHEW_SALTY); regulation; couples CheA histidine kinase to transducers; purine-binding chemotaxis protein 1976752 cheW 990282001899 cheW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 purine-binding chemotaxis protein YP_005252430.1 1976249 R 990282 CDS YP_005252431.1 378989267 complement(1976773..1978788) 1 NC_016863.1 chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA 1978788 cheA 990282001900 cheA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chemotaxis protein CheA YP_005252431.1 1976773 R 990282 CDS YP_005252432.1 378989268 complement(1978793..1979722) 1 NC_016863.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 1979722 motB 990282001901 motB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar motor protein MotB YP_005252432.1 1978793 R 990282 CDS YP_005252433.1 378989269 complement(1979719..1980606) 1 NC_016863.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 1980606 motA 990282001902 motA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar motor protein MotA YP_005252433.1 1979719 R 990282 CDS YP_005252434.1 378989270 complement(1980731..1981315) 1 NC_016863.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 1981315 flhC 990282001903 flhC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional activator FlhC YP_005252434.1 1980731 R 990282 CDS YP_005252435.1 378989271 complement(1981312..1981662) 1 NC_016863.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 1981662 flhD 990282001904 flhD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional activator FlhD YP_005252435.1 1981312 R 990282 CDS YP_005252436.1 378989272 1982336..1982452 1 NC_016863.1 putative cytoplasmic protein 1982452 990282001905 STMUK_1906 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252436.1 1982336 D 990282 CDS YP_005252437.1 378989273 1982449..1982877 1 NC_016863.1 ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspC 1982877 yecG 990282001906 yecG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 universal stress protein UspC YP_005252437.1 1982449 D 990282 CDS YP_005252438.1 378989274 complement(1982895..1984316) 1 NC_016863.1 similar to Escherichia coli trehalose-6-phosphate synthase (AAC74966.1); trehalose-6-phosphate synthase 1984316 otsA 990282001907 otsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 trehalose-6-phosphate synthase YP_005252438.1 1982895 R 990282 CDS YP_005252439.1 378989275 complement(1984291..1985094) 1 NC_016863.1 biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-6-phosphate phosphatase 1985094 otsB 990282001908 otsB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 trehalose-6-phosphate phosphatase YP_005252439.1 1984291 R 990282 CDS YP_005252440.1 378989276 complement(1985728..1986285) 1 NC_016863.1 similar to Escherichia coli 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis (AAC73527.1); putative intracellular protease/amidase 1986285 araH 990282001909 araH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative intracellular protease/amidase YP_005252440.1 1985728 R 990282 CDS YP_005252441.1 378989277 1986837..1987340 1 NC_016863.1 similar to Escherichia coli ferritin-like protein (AAC74972.1); ferritin-like protein 1987340 ftnB 990282001910 ftnB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ferritin-like protein YP_005252441.1 1986837 D 990282 CDS YP_005252442.1 378989278 complement(1987519..1988157) 1 NC_016863.1 hypothetical protein 1988157 990282001911 STMUK_1912 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252442.1 1987519 R 990282 CDS YP_005252443.1 378989279 1988413..1988748 1 NC_016863.1 putative outer membrane lipoprotein 1988748 990282001912 STMUK_1913 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005252443.1 1988413 D 990282 CDS YP_005252444.1 378989280 1988988..1989485 1 NC_016863.1 cytoplasmic iron storage protein; ferritin 1989485 ftn 990282001913 ftn Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ferritin YP_005252444.1 1988988 D 990282 CDS YP_005252445.1 378989281 complement(1989531..1989770) 1 NC_016863.1 putative cytoplasmic protein 1989770 yecH 990282001914 yecH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252445.1 1989531 R 990282 CDS YP_005252446.1 378989282 1989997..1991208 1 NC_016863.1 similar to Escherichia coli tyrosine-specific transport system (AAC74977.1); HAAAP family; tyrosine-specific transport protein 1991208 tyrP 990282001915 tyrP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tyrosine-specific transport protein YP_005252446.1 1989997 D 990282 CDS YP_005252447.1 378989283 complement(1991283..1991948) 1 NC_016863.1 similar to the C-terminal domain of SecA; hypothetical protein 1991948 yecA 990282001916 yecA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252447.1 1991283 R 990282 CDS YP_005252448.1 378989284 complement(1992186..1992512) 1 NC_016863.1 putative glucose-6-phosphate dehydrogenase 1992512 990282001917 STMUK_1918 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glucose-6-phosphate dehydrogenase YP_005252448.1 1992186 R 990282 CDS YP_005252449.1 378989285 complement(1992725..1994164) 1 NC_016863.1 putative cell wall-associated hydrolase 1994164 990282001918 STMUK_1919 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cell wall-associated hydrolase YP_005252449.1 1992725 R 990282 CDS YP_005252450.1 378989286 complement(1994377..1994709) 1 NC_016863.1 putative inner membrane protein 1994709 990282001919 STMUK_1920 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252450.1 1994377 R 990282 CDS YP_005252451.1 378989287 complement(1995410..1995958) 1 NC_016863.1 similar to Escherichia coli phosphatidylglycerophosphate synthetase/CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase (AAC74979.1); phosphatidylglycerophosphate synthetase 1995958 pgsA 990282001923 pgsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphatidylglycerophosphate synthetase YP_005252451.1 1995410 R 990282 CDS YP_005252452.1 378989288 complement(1996015..1997847) 1 NC_016863.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1997847 uvrC 990282001924 uvrC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 excinuclease ABC subunit C YP_005252452.1 1996015 R 990282 CDS YP_005252453.1 378989289 complement(1997844..1998500) 1 NC_016863.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate v; response regulator 1998500 sirA 990282001925 sirA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 response regulator YP_005252453.1 1997844 R 990282 CDS YP_005252454.1 378989290 1998812..1998967 1 NC_016863.1 putative inner membrane protein 1998967 990282001926 STMUK_1927 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252454.1 1998812 D 990282 CDS YP_005252455.1 378989291 1998964..1999188 1 NC_016863.1 hypothetical protein 1999188 yecF 990282001927 yecF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252455.1 1998964 D 990282 CDS YP_005252456.1 378989292 complement(1999255..1999977) 1 NC_016863.1 regulates genes involved in cell division; DNA-binding transcriptional activator SdiA 1999977 sdiA 990282001928 sdiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator SdiA YP_005252456.1 1999255 R 990282 CDS YP_005252457.1 378989293 complement(2000209..2000961) 1 NC_016863.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC74984.1); putative amino-acid ABC transporter ATP-binding protein YecC 2000961 yecC 990282001929 yecC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative amino-acid ABC transporter ATP-binding protein YecC YP_005252457.1 2000209 R 990282 CDS YP_005252458.1 378989294 complement(2000958..2001626) 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein; formerly yecC (AAC74985.1); putative ABC-type amino acid transporter permease component 2001626 yecS 990282001930 yecS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type amino acid transporter permease component YP_005252458.1 2000958 R 990282 CDS YP_005252459.1 378989295 complement(2001647..2002633) 1 NC_016863.1 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 2002633 yedO 990282001931 yedO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-cysteine desulfhydrase YP_005252459.1 2001647 R 990282 CDS YP_005252460.1 378989296 complement(2002787..2003587) 1 NC_016863.1 similar to Escherichia coli putative periplasmic binding transport protein (AAC74987.1); cystine transporter subunit 2003587 fliY 990282001932 fliY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cystine transporter subunit YP_005252460.1 2002787 R 990282 CDS YP_005252461.1 378989297 complement(2003734..2004285) 1 NC_016863.1 expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasi; flagella biosynthesis protein FliZ 2004285 fliZ 990282001933 fliZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagella biosynthesis protein FliZ YP_005252461.1 2003734 R 990282 CDS YP_005252462.1 378989298 complement(2004344..2005063) 1 NC_016863.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 2005063 fliA 990282001934 fliA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar biosynthesis sigma factor YP_005252462.1 2004344 R 990282 CDS YP_005252463.1 378989299 complement(2005332..2005790) 1 NC_016863.1 transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 2005790 tnpA_6 990282001935 tnpA_6 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transposase for IS200 YP_005252463.1 2005332 R 990282 CDS YP_005252464.1 378989300 complement(2005971..2007176) 1 NC_016863.1 N-methylation of lysine residues in flagellin (SW:FLIB_SALTY); lysine-N-methylase 2007176 fliB 990282001936 fliB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lysine-N-methylase YP_005252464.1 2005971 R 990282 CDS YP_005252465.1 378989301 complement(2007255..2008742) 1 NC_016863.1 structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; flagellin 2008742 fliC 990282001937 fliC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellin YP_005252465.1 2007255 R 990282 CDS YP_005252466.1 378989302 2008999..2010402 1 NC_016863.1 involved in flagellin assembly; flagellar capping protein 2010402 fliD 990282001938 fliD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar capping protein YP_005252466.1 2008999 D 990282 CDS YP_005252467.1 378989303 2010417..2010824 1 NC_016863.1 flagellin specific chaperone; flagellar protein FliS 2010824 fliS 990282001939 fliS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar protein FliS YP_005252467.1 2010417 D 990282 CDS YP_005252468.1 378989304 2010824..2011192 1 NC_016863.1 binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter; flagellar biosynthesis protein FliT 2011192 fliT 990282001940 fliT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar biosynthesis protein FliT YP_005252468.1 2010824 D 990282 CDS YP_005252469.1 378989305 2011264..2012748 1 NC_016863.1 converts 1,4-alpha-D-glucans to maltodextrin; alpha-amylase 2012748 amyA 990282001941 amyA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alpha-amylase YP_005252469.1 2011264 D 990282 CDS YP_005252470.1 378989306 complement(2012788..2013213) 1 NC_016863.1 hypothetical 15.5 kDa protein in amyA-fliE intergenic region (SW:YEDD_SALTY); hypothetical protein 2013213 yedD 990282001942 yedD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252470.1 2012788 R 990282 CDS YP_005252471.1 378989307 2013339..2014604 1 NC_016863.1 hypothetical 44.2 kDa protein in amyA-fliE intergenic region (SW:YEDE_SALTY); component of transport system; putative inner membrane protein 2014604 yedE 990282001943 yedE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252471.1 2013339 D 990282 CDS YP_005252472.1 378989308 2014601..2014834 1 NC_016863.1 hypothetical 8.6 kDa protein in amyA-fliE intergenic region; ORF 9 (SW:YEDF_ECOLI); hypothetical protein 2014834 yedF 990282001944 yedF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252472.1 2014601 D 990282 CDS YP_005252473.1 378989309 2015099..2015485 1 NC_016863.1 putative 50S ribosomal protein 2015485 990282001945 STMUK_1946 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative 50S ribosomal protein YP_005252473.1 2015099 D 990282 CDS YP_005252474.1 378989310 complement(2015605..2015919) 1 NC_016863.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 2015919 fliE 990282001946 fliE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar hook-basal body protein FliE YP_005252474.1 2015605 R 990282 CDS YP_005252475.1 378989311 2016136..2017818 1 NC_016863.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 2017818 fliF 990282001947 fliF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar MS-ring protein YP_005252475.1 2016136 D 990282 CDS YP_005252476.1 378989312 2017811..2018806 1 NC_016863.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2018806 fliG 990282001948 fliG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar motor switch protein G YP_005252476.1 2017811 D 990282 CDS YP_005252477.1 378989313 2018799..2019506 1 NC_016863.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 2019506 fliH 990282001949 fliH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar assembly protein H YP_005252477.1 2018799 D 990282 CDS YP_005252478.1 378989314 2019506..2020876 1 NC_016863.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2020876 fliI 990282001950 fliI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellum-specific ATP synthase YP_005252478.1 2019506 D 990282 CDS YP_005252479.1 378989315 2020898..2021341 1 NC_016863.1 rod/hook and filament chaperone; flagellar biosynthesis chaperone 2021341 fliJ 990282001951 fliJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar biosynthesis chaperone YP_005252479.1 2020898 D 990282 CDS YP_005252480.1 378989316 2021338..2022555 1 NC_016863.1 flagellar hook-length control protein (SW:FLIK_SALTY); flagellar hook-length control protein 2022555 fliK 990282001952 fliK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar hook-length control protein YP_005252480.1 2021338 D 990282 CDS YP_005252481.1 378989317 2022660..2023127 1 NC_016863.1 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 2023127 fliL 990282001953 fliL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar basal body-associated protein FliL YP_005252481.1 2022660 D 990282 CDS YP_005252482.1 378989318 2023132..2024136 1 NC_016863.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2024136 fliM 990282001954 fliM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar motor switch protein FliM YP_005252482.1 2023132 D 990282 CDS YP_005252483.1 378989319 2024133..2024546 1 NC_016863.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 2024546 fliN 990282001955 fliN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar motor switch protein FliN YP_005252483.1 2024133 D 990282 CDS YP_005252484.1 378989320 2024546..2024923 1 NC_016863.1 with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus; flagellar biosynthesis protein FliO 2024923 fliO 990282001956 fliO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar biosynthesis protein FliO YP_005252484.1 2024546 D 990282 CDS YP_005252485.1 378989321 2024923..2025660 1 NC_016863.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2025660 fliP 990282001957 fliP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar biosynthesis protein FliP YP_005252485.1 2024923 D 990282 CDS YP_005252486.1 378989322 2025670..2025939 1 NC_016863.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 2025939 fliQ 990282001958 fliQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar biosynthesis protein FliQ YP_005252486.1 2025670 D 990282 CDS YP_005252487.1 378989323 2025948..2026742 1 NC_016863.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 2026742 fliR 990282001959 fliR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellar biosynthesis protein FliR YP_005252487.1 2025948 D 990282 CDS YP_005252488.1 378989324 2027024..2027647 1 NC_016863.1 positive transcriptional regulator of capsular/exo-polysaccharide synthesis; LuxR/UhpA family (SW:RCSA_SALTY); colanic acid capsular biosynthesis activation protein A 2027647 rcsA 990282001960 rcsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 colanic acid capsular biosynthesis activation protein A YP_005252488.1 2027024 D 990282 CDS YP_005252489.1 378989325 complement(2027686..2027880) 1 NC_016863.1 similar to hypothetical protein STY2191 (Pid: NP_456544.1).; hypothetical protein 2027880 990282001961 STMUK_1962 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252489.1 2027686 R 990282 CDS YP_005252490.1 378989326 2028009..2028236 1 NC_016863.1 putative cytoplasmic protein 2028236 yodD 990282001962 yodD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252490.1 2028009 D 990282 CDS YP_005252491.1 378989327 2028546..2029361 1 NC_016863.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2029361 yedP 990282001963 yedP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 mannosyl-3-phosphoglycerate phosphatase YP_005252491.1 2028546 D 990282 CDS YP_005252492.1 378989328 complement(2029340..2031052) 1 NC_016863.1 putative inner membrane protein 2031052 990282001964 STMUK_1965 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252492.1 2029340 R 990282 CDS YP_005252493.1 378989329 complement(2031217..2031462) 1 NC_016863.1 putative cytoplasmic protein 2031462 990282001965 STMUK_1966 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252493.1 2031217 R 990282 CDS YP_005252494.1 378989330 complement(2031479..2032390) 1 NC_016863.1 hypothetical protein 2032390 yedI 990282001966 yedI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252494.1 2031479 R 990282 CDS YP_005252495.1 378989331 2032566..2033486 1 NC_016863.1 similar to Escherichia coli putative transmembrane subunit (AAC75025.1); hypothetical protein 2033486 yedA 990282001967 yedA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252495.1 2032566 D 990282 CDS YP_005252496.1 378989332 complement(2033475..2033945) 1 NC_016863.1 similar to Escherichia coli DNA mismatch endonuclease patch repair protein (AAC75026.1); patch repair protein; DNA mismatch endonuclease 2033945 vsr 990282001968 vsr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA mismatch endonuclease YP_005252496.1 2033475 R 990282 CDS YP_005252497.1 378989333 complement(2033926..2035356) 1 NC_016863.1 similar to Escherichia coli DNA cytosine methylase (AAC75027.1); DNA cytosine methylase 2035356 dcm 990282001969 dcm Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA cytosine methylase YP_005252497.1 2033926 R 990282 CDS YP_005252498.1 378989334 complement(2035430..2036125) 1 NC_016863.1 hypothetical protein 2036125 yedJ 990282001970 yedJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252498.1 2035430 R 990282 CDS YP_005252499.1 378989335 complement(2036217..2036516) 1 NC_016863.1 putative inner membrane protein 2036516 990282001971 STMUK_1972 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252499.1 2036217 R 990282 CDS YP_005252500.1 378989336 2037166..2038362 1 NC_016863.1 similar to Escherichia coli putative outer membrane protein (AAC74459.1); putative porin 2038362 ompS 990282001972 ompS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative porin YP_005252500.1 2037166 D 990282 CDS YP_005252501.1 378989337 complement(2038822..2039034) 1 NC_016863.1 similar to Escherichia coli cold shock-like protein (AAC74625.1); putative cold-shock protein 2039034 cspB 990282001973 cspB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cold-shock protein YP_005252501.1 2038822 R 990282 CDS YP_005252502.1 378989338 complement(2039489..2040757) 1 NC_016863.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 2040757 umuC 990282001974 umuC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase V subunit UmuC YP_005252502.1 2039489 R 990282 CDS YP_005252503.1 378989339 complement(2040760..2041179) 1 NC_016863.1 binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuD 2041179 umuD 990282001975 umuD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase V subunit UmuD YP_005252503.1 2040760 R 990282 CDS YP_005252504.1 378989340 complement(2041306..2041467) 1 NC_016863.1 putative cytoplasmic protein 2041467 990282001976 STMUK_1977 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252504.1 2041306 R 990282 CDS YP_005252505.1 378989341 complement(2042098..2042319) 1 NC_016863.1 hypothetical protein 2042319 990282001977 STMUK_1978 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252505.1 2042098 R 990282 CDS YP_005252506.1 378989342 2042532..2043539 1 NC_016863.1 hypothetical protein 2043539 990282001978 STMUK_1979 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252506.1 2042532 D 990282 CDS YP_005252507.1 378989343 complement(2043540..2043689) 1 NC_016863.1 hypothetical protein 2043689 990282001979 STMUK_1980 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252507.1 2043540 R 990282 CDS YP_005252508.1 378989344 complement(2043824..2044393) 1 NC_016863.1 hypothetical protein 2044393 990282001980 STMUK_1981 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252508.1 2043824 R 990282 CDS YP_005252509.1 378989345 complement(2044393..2045955) 1 NC_016863.1 similar to tail fiber protein in phage P2; phage tail-like protein 2045955 990282001981 STMUK_1982 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phage tail-like protein YP_005252509.1 2044393 R 990282 CDS YP_005252510.1 378989346 complement(2045942..2046529) 1 NC_016863.1 hypothetical protein 2046529 990282001982 STMUK_1983 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252510.1 2045942 R 990282 CDS YP_005252511.1 378989347 complement(2046532..2047053) 1 NC_016863.1 similar to tail protein (Pid: YP_002117168.1).; hypothetical protein 2047053 990282001983 STMUK_1984 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252511.1 2046532 R 990282 CDS YP_005252512.1 378989348 complement(2047088..2047612) 1 NC_016863.1 similar to tail protein (Pid: YP_002117168.1).; hypothetical protein 2047612 990282001984 STMUK_1985 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252512.1 2047088 R 990282 CDS YP_005252513.1 378989349 complement(2047605..2048018) 1 NC_016863.1 similar to phage protein (Pid: YP_002244021.1).; hypothetical protein 2048018 990282001985 STMUK_1986 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252513.1 2047605 R 990282 CDS YP_005252514.1 378989350 complement(2048023..2048556) 1 NC_016863.1 similar to bacteriophage Mu Gp45 protein (Pid: YP_002216016.1).; hypothetical protein 2048556 990282001986 STMUK_1987 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252514.1 2048023 R 990282 CDS YP_005252515.1 378989351 complement(2048556..2049614) 1 NC_016863.1 similar to bacteriophage Mu P protein (Pid: YP_002115113.1).; hypothetical protein 2049614 990282001987 STMUK_1988 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252515.1 2048556 R 990282 CDS YP_005252516.1 378989352 complement(2049611..2050951) 1 NC_016863.1 similar to tail/DNA circulation protein (Pid: YP_002216017.1).; hypothetical protein 2050951 990282001988 STMUK_1989 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252516.1 2049611 R 990282 CDS YP_005252517.1 378989353 complement(2050985..2052913) 1 NC_016863.1 similar to tail protein (Pid: YP_002216018.1).; hypothetical protein 2052913 990282001989 STMUK_1990 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252517.1 2050985 R 990282 CDS YP_005252518.1 378989354 complement(2052998..2053324) 1 NC_016863.1 similar to hypothetical protein SeSA_A4474 (Pid: YP_002117161.1).; hypothetical protein 2053324 990282001990 STMUK_1991 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252518.1 2052998 R 990282 CDS YP_005252519.1 378989355 complement(2053321..2053677) 1 NC_016863.1 similar to tail tube protein (Pid: YP_002117160.1).; hypothetical protein 2053677 990282001991 STMUK_1992 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252519.1 2053321 R 990282 CDS YP_005252520.1 378989356 complement(2053677..2055173) 1 NC_016863.1 similar to bacteriophage Mu tail sheath protein (Pid: YP_002115118.1).; hypothetical protein 2055173 990282001992 STMUK_1993 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252520.1 2053677 R 990282 CDS YP_005252521.1 378989357 complement(2055163..2055327) 1 NC_016863.1 similar to hypothetical protein SPAB_02157 (Pid: YP_001588373.1).; hypothetical protein 2055327 990282001993 STMUK_1994 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252521.1 2055163 R 990282 CDS YP_005252522.1 378989358 complement(2055331..2055891) 1 NC_016863.1 similar to hypothetical protein SeD_A2261 (Pid: YP_002216023.1).; hypothetical protein 2055891 990282001994 STMUK_1995 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252522.1 2055331 R 990282 CDS YP_005252523.1 378989359 complement(2055888..2056400) 1 NC_016863.1 similar to hypothetical protein SPAB_02159 (Pid: YP_001588375.1).; hypothetical protein 2056400 990282001995 STMUK_1996 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252523.1 2055888 R 990282 CDS YP_005252524.1 378989360 complement(2056372..2056776) 1 NC_016863.1 similar to hypothetical protein SPAB_02160 (Pid: YP_001588376.1).; hypothetical protein 2056776 990282001996 STMUK_1997 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252524.1 2056372 R 990282 CDS YP_005252525.1 378989361 complement(2056773..2057096) 1 NC_016863.1 similar to hypothetical protein SeSA_A2261 (Pid: YP_002115123.1).; hypothetical protein 2057096 990282001997 STMUK_1998 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252525.1 2056773 R 990282 CDS YP_005252526.1 378989362 complement(2057099..2057299) 1 NC_016863.1 similar to hypothetical protein SPAB_02162 (Pid: YP_001588378.1).; hypothetical protein 2057299 990282001998 STMUK_1999 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252526.1 2057099 R 990282 CDS YP_005252527.1 378989363 complement(2057350..2058555) 1 NC_016863.1 similar to phage major capsid protein, HK97 family (Pid: YP_002216028.1).; hypothetical protein 2058555 990282001999 STMUK_2000 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252527.1 2057350 R 990282 CDS YP_005252528.1 378989364 complement(2058570..2059220) 1 NC_016863.1 similar to phage prohead protease, HK97 family (Pid: YP_002115126.1).; hypothetical protein 2059220 990282002000 STMUK_2001 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252528.1 2058570 R 990282 CDS YP_005252529.1 378989365 complement(2059198..2060439) 1 NC_016863.1 similar to putative phage portal protein (Pid: YP_002381789.1).; hypothetical protein 2060439 990282002001 STMUK_2002 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252529.1 2059198 R 990282 CDS YP_005252530.1 378989366 complement(2060439..2060621) 1 NC_016863.1 similar to hypothetical protein SeSA_A2266 (Pid: YP_002115128.1).; hypothetical protein 2060621 990282002002 STMUK_2003 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252530.1 2060439 R 990282 CDS YP_005252531.1 378989367 complement(2060633..2062366) 1 NC_016863.1 similar to putative phage terminase, large subunit (Pid: YP_002216031.1).; hypothetical protein 2062366 990282002003 STMUK_2004 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252531.1 2060633 R 990282 CDS YP_005252532.1 378989368 complement(2062363..2062857) 1 NC_016863.1 similar to hypothetical protein SPAB_02168 (Pid: YP_001588384.1).; hypothetical protein 2062857 990282002004 STMUK_2005 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252532.1 2062363 R 990282 CDS YP_005252533.1 378989369 complement(2063916..2064335) 1 NC_016863.1 similar to hypothetical protein SeD_A0634 (Pid: YP_002214537.1).; hypothetical protein 2064335 990282002005 STMUK_2006 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252533.1 2063916 R 990282 CDS YP_005252534.1 378989370 complement(2064548..2065033) 1 NC_016863.1 bacteriophage ES18 gp15 protein (gi|1143595); hypothetical protein 2065033 990282002006 STMUK_2007 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252534.1 2064548 R 990282 CDS YP_005252535.1 378989371 complement(2065647..2065991) 1 NC_016863.1 hypothetical protein 2065991 990282002007 STMUK_2008 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252535.1 2065647 R 990282 CDS YP_005252536.1 378989372 complement(2066517..2066876) 1 NC_016863.1 hypothetical protein 2066876 990282002008 STMUK_2009 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252536.1 2066517 R 990282 CDS YP_005252537.1 378989373 complement(2066907..2067530) 1 NC_016863.1 similar to hypothetical protein Ent638_2252 (Pid: YP_001176975.1).; hypothetical protein 2067530 990282002009 STMUK_2010 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252537.1 2066907 R 990282 CDS YP_005252538.1 378989374 complement(2067541..2068536) 1 NC_016863.1 putative cytoplasmic protein 2068536 990282002010 STMUK_2011 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252538.1 2067541 R 990282 CDS YP_005252539.1 378989375 complement(2068538..2069398) 1 NC_016863.1 similar to hypothetical protein SeHA_C2478 (Pid: YP_002046294.1).; hypothetical protein 2069398 990282002011 STMUK_2012 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252539.1 2068538 R 990282 CDS YP_005252540.1 378989376 complement(2069415..2069804) 1 NC_016863.1 hypothetical protein 2069804 990282002012 STMUK_2013 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252540.1 2069415 R 990282 CDS YP_005252541.1 378989377 complement(2069801..2070694) 1 NC_016863.1 similar to putative prophage DNA adenine methylase (Pid: YP_003366151.1).; hypothetical protein 2070694 990282002013 STMUK_2014 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252541.1 2069801 R 990282 CDS YP_005252542.1 378989378 complement(2071178..2071996) 1 NC_016863.1 hypothetical protein 2071996 990282002014 STMUK_2015 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252542.1 2071178 R 990282 CDS YP_005252543.1 378989379 complement(2071993..2072217) 1 NC_016863.1 hypothetical protein 2072217 990282002015 STMUK_2016 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252543.1 2071993 R 990282 CDS YP_005252544.1 378989380 complement(2072214..2073371) 1 NC_016863.1 hypothetical protein 2073371 990282002016 STMUK_2017 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252544.1 2072214 R 990282 CDS YP_005252545.1 378989381 complement(2073368..2073922) 1 NC_016863.1 similar to hypothetical protein SC1197 (Pid: YP_216184.1).; hypothetical protein 2073922 990282002017 STMUK_2018 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252545.1 2073368 R 990282 CDS YP_005252546.1 378989382 complement(2073951..2074175) 1 NC_016863.1 similar to hypothetical protein SeD_A2288 (Pid: YP_002216048.1).; hypothetical protein 2074175 990282002018 STMUK_2019 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252546.1 2073951 R 990282 CDS YP_005252547.1 378989383 2074273..2074968 1 NC_016863.1 similar to phage encoded transcriptional regulator (Pid: YP_002244054.1).; hypothetical protein 2074968 990282002019 STMUK_2020 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252547.1 2074273 D 990282 CDS YP_005252548.1 378989384 2075621..2076154 1 NC_016863.1 hypothetical protein 2076154 990282002020 STMUK_2021 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252548.1 2075621 D 990282 CDS YP_005252549.1 378989385 2076212..2077039 1 NC_016863.1 similar to hypothetical protein SeSA_A4442 (Pid: YP_002117129.1).; hypothetical protein 2077039 990282002021 STMUK_2022 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252549.1 2076212 D 990282 CDS YP_005252550.1 378989386 2077176..2077715 1 NC_016863.1 similar to phage protein (Pid: YP_002244058.1).; hypothetical protein 2077715 990282002022 STMUK_2023 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252550.1 2077176 D 990282 CDS YP_005252551.1 378989387 2078013..2078528 1 NC_016863.1 similar to hypothetical protein SC0328 (Pid: YP_215315.1).; hypothetical protein 2078528 990282002023 STMUK_2024 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252551.1 2078013 D 990282 CDS YP_005252552.1 378989388 2078525..2079142 1 NC_016863.1 similar to hypothetical protein SARI_02684 (Pid: YP_001571683.1).; hypothetical protein 2079142 990282002024 STMUK_2025 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252552.1 2078525 D 990282 CDS YP_005252553.1 378989389 2079139..2079972 1 NC_016863.1 similar to Eaa protein (Pid: YP_002214510.1).; hypothetical protein 2079972 990282002025 STMUK_2026 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252553.1 2079139 D 990282 CDS YP_005252554.1 378989390 2079976..2080545 1 NC_016863.1 similar to phage protein (Pid: YP_002244063.1).; hypothetical protein 2080545 990282002026 STMUK_2027 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252554.1 2079976 D 990282 CDS YP_005252555.1 378989391 2080570..2080812 1 NC_016863.1 hypothetical protein 2080812 990282002027 STMUK_2028 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252555.1 2080570 D 990282 CDS YP_005252556.1 378989392 2080814..2081803 1 NC_016863.1 similar to phage integrase (Pid: YP_002244065.1).; hypothetical protein 2081803 990282002028 STMUK_2029 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252556.1 2080814 D 990282 CDS YP_005252557.1 378989393 2082095..2082892 1 NC_016863.1 putative inner membrane protein 2082892 yeeI 990282002030 yeeI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252557.1 2082095 D 990282 CDS YP_005252558.1 378989394 2084202..2084675 1 NC_016863.1 putative endoprotease 2084675 990282002033 STMUK_2034 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative endoprotease YP_005252558.1 2084202 D 990282 CDS YP_005252559.1 378989395 2085150..2085848 1 NC_016863.1 putative branched chain amino acid transportprotein 2085848 990282002034 STMUK_2035 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative branched chain amino acid transportprotein YP_005252559.1 2085150 D 990282 CDS YP_005252560.1 378989396 2086665..2088359 1 NC_016863.1 contains TPR repeats; hypothetical protein 2088359 990282002035 STMUK_2036 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252560.1 2086665 D 990282 CDS YP_005252561.1 378989397 2088416..2090146 1 NC_016863.1 hypothetical protein 2090146 990282002036 STMUK_2037 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252561.1 2088416 D 990282 CDS YP_005252562.1 378989398 2090356..2090529 1 NC_016863.1 similar to hypothetical protein SPAB_01098 (Pid: YP_001587350.1).; hypothetical protein 2090529 990282002037 STMUK_2038 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252562.1 2090356 D 990282 CDS YP_005252563.1 378989399 complement(2091051..2092505) 1 NC_016863.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 2092505 amn 990282002038 amn Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 AMP nucleosidase YP_005252563.1 2091051 R 990282 CDS YP_005252564.1 378989400 2092551..2092712 1 NC_016863.1 putative cytoplasmic protein 2092712 990282002039 STMUK_2040 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252564.1 2092551 D 990282 CDS YP_005252565.1 378989401 complement(2092701..2093027) 1 NC_016863.1 similar to STM2508 and STM2902; putative cytoplasmic protein 2093027 990282002040 STMUK_2041 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252565.1 2092701 R 990282 CDS YP_005252566.1 378989402 complement(2094121..2095578) 1 NC_016863.1 MATE family; hypothetical protein 2095578 yeeO 990282002042 yeeO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252566.1 2094121 R 990282 CDS YP_005252567.1 378989403 complement(2096040..2096969) 1 NC_016863.1 protein ErkF/SrfK precursor (SW:ERFK_SALTY); hypothetical protein 2096969 erfK 990282002044 erfK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252567.1 2096040 R 990282 CDS YP_005252568.1 378989404 complement(2097047..2098117) 1 NC_016863.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2098117 cobT 990282002045 cobT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_005252568.1 2097047 R 990282 CDS YP_005252569.1 378989405 complement(2098144..2098887) 1 NC_016863.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 2098887 cobS 990282002046 cobS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cobalamin synthase YP_005252569.1 2098144 R 990282 CDS YP_005252570.1 378989406 complement(2098884..2099429) 1 NC_016863.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 2099429 cobU 990282002047 cobU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase YP_005252570.1 2098884 R 990282 CDS YP_005252571.1 378989407 complement(2099426..2100946) 1 NC_016863.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2100946 cbiP 990282002048 cbiP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cobyric acid synthase YP_005252571.1 2099426 R 990282 CDS YP_005252572.1 378989408 complement(2100943..2101758) 1 NC_016863.1 with CbiNQ forms the ABC transporter for cobalt import; cobalt transporter ATP-binding subunit 2101758 cbiO 990282002049 cbiO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cobalt transporter ATP-binding subunit YP_005252572.1 2100943 R 990282 CDS YP_005252573.1 378989409 complement(2101767..2102444) 1 NC_016863.1 cobalt transport protein CbiQ (SW:CBIQ_SALTY); vitamin B12 biosynthetic protein 2102444 cbiQ 990282002050 cbiQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 vitamin B12 biosynthetic protein YP_005252573.1 2101767 R 990282 CDS YP_005252574.1 378989410 complement(2102431..2102712) 1 NC_016863.1 periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 2102712 cbiN 990282002051 cbiN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cobalt transport protein CbiN YP_005252574.1 2102431 R 990282 CDS YP_005252575.1 378989411 complement(2102714..2103451) 1 NC_016863.1 catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 2103451 cbiM 990282002052 cbiM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cobalt transport protein CbiM YP_005252575.1 2102714 R 990282 CDS YP_005252576.1 378989412 complement(2103448..2104161) 1 NC_016863.1 catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase 2104161 cbiL 990282002053 cbiL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cobalt-precorrin-2 C(20)-methyltransferase YP_005252576.1 2103448 R 990282 CDS YP_005252577.1 378989413 complement(2104158..2104952) 1 NC_016863.1 cobalt chelatase (SW:CBIK_SALTY); vitamin B12 biosynthetic protein 2104952 cbiK 990282002054 cbiK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 vitamin B12 biosynthetic protein YP_005252577.1 2104158 R 990282 CDS YP_005252578.1 378989414 complement(2104955..2105746) 1 NC_016863.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cob; cobalt-precorrin-6x reductase 2105746 cobK 990282002055 cobK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cobalt-precorrin-6x reductase YP_005252578.1 2104955 R 990282 CDS YP_005252579.1 378989415 complement(2105743..2106468) 1 NC_016863.1 catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; precorrin-3B C(17)-methyltransferase 2106468 cbiH 990282002056 cbiH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 precorrin-3B C(17)-methyltransferase YP_005252579.1 2105743 R 990282 CDS YP_005252580.1 378989416 complement(2106468..2107523) 1 NC_016863.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG 2107523 cbiG 990282002057 cbiG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cobalamin biosynthesis protein CbiG YP_005252580.1 2106468 R 990282 CDS YP_005252581.1 378989417 complement(2107504..2108277) 1 NC_016863.1 precorrin-4 C11-methyltransferase (SW:CBIF_SALTY); vitamin B12 biosynthetic protein 2108277 cbiF 990282002058 cbiF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 vitamin B12 biosynthetic protein YP_005252581.1 2107504 R 990282 CDS YP_005252582.1 378989418 complement(2108261..2108839) 1 NC_016863.1 catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase 2108839 cbiT 990282002059 cbiT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cobalt-precorrin-6Y C(15)-methyltransferase YP_005252582.1 2108261 R 990282 CDS YP_005252583.1 378989419 complement(2108829..2109434) 1 NC_016863.1 catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase 2109434 cbiE 990282002060 cbiE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cobalt-precorrin-6Y C(5)-methyltransferase YP_005252583.1 2108829 R 990282 CDS YP_005252584.1 378989420 complement(2109428..2110567) 1 NC_016863.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 2110567 cbiD 990282002061 cbiD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cobalt-precorrin-6A synthase YP_005252584.1 2109428 R 990282 CDS YP_005252585.1 378989421 complement(2110567..2111199) 1 NC_016863.1 catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase 2111199 cbiC 990282002062 cbiC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cobalt-precorrin-8X methylmutase YP_005252585.1 2110567 R 990282 CDS YP_005252586.1 378989422 complement(2111210..2112169) 1 NC_016863.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 2112169 cobD 990282002063 cobD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cobalamin biosynthesis protein YP_005252586.1 2111210 R 990282 CDS YP_005252587.1 378989423 complement(2112166..2113545) 1 NC_016863.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 2113545 cbiA 990282002064 cbiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cobyrinic acid a,c-diamide synthase YP_005252587.1 2112166 R 990282 CDS YP_005252588.1 378989424 complement(2114143..2115054) 1 NC_016863.1 regulatory protein PocR (SW:POCR_SALTY); propanediol utilization protein; AraC family; transcriptional regulator 2115054 pocR 990282002065 pocR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator YP_005252588.1 2114143 R 990282 CDS YP_005252589.1 378989425 complement(2115271..2116065) 1 NC_016863.1 propanediol diffusion facilitator (SW:PDUF_SALTY); propanediol utilization protein; propanediol diffusion facilitator 2116065 pduF 990282002066 pduF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 propanediol diffusion facilitator YP_005252589.1 2115271 R 990282 CDS YP_005252590.1 378989426 2116590..2116874 1 NC_016863.1 propanediol utilization protein PduA (SW:PDUA_SALTY); propanediol utilization protein; polyhedral body protein 2116874 pduA 990282002067 pduA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 polyhedral body protein YP_005252590.1 2116590 D 990282 CDS YP_005252591.1 378989427 2116982..2117683 1 NC_016863.1 propanediol utilization protein PduB (SW:PDUB_SALTY); propanediol utilization protein; polyhedral body protein 2117683 pudB 990282002068 pudB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 polyhedral body protein YP_005252591.1 2116982 D 990282 CDS YP_005252592.1 378989428 2117702..2119366 1 NC_016863.1 glycerol dehydratase large subunit (SW:DHAB_SALTY); propanediol utilization protein; propanediol dehydratase large subunit 2119366 pduC 990282002069 pduC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 propanediol dehydratase large subunit YP_005252592.1 2117702 D 990282 CDS YP_005252593.1 378989429 2119377..2120051 1 NC_016863.1 propanediol utilization protein; propanediol dehydratase medium subunit 2120051 pduD 990282002070 pduD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 propanediol dehydratase medium subunit YP_005252593.1 2119377 D 990282 CDS YP_005252594.1 378989430 2120066..2120587 1 NC_016863.1 propanediol utilization protein; propanediol dehydratase small subunit 2120587 pduE 990282002071 pduE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 propanediol dehydratase small subunit YP_005252594.1 2120066 D 990282 CDS YP_005252595.1 378989431 2120597..2122429 1 NC_016863.1 propanediol utilization protein; propanediol dehydratase reactivation protein 2122429 pduG 990282002072 pduG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 propanediol dehydratase reactivation protein YP_005252595.1 2120597 D 990282 CDS YP_005252596.1 378989432 2122419..2122769 1 NC_016863.1 propanediol utilization protein; propanediol dehydratase reactivation protein 2122769 pduH 990282002073 pduH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 propanediol dehydratase reactivation protein YP_005252596.1 2122419 D 990282 CDS YP_005252597.1 378989433 2122788..2123063 1 NC_016863.1 similar to Escherichia coli detox protein (AAC75510.1); propanediol utilization protein; polyhedral body protein 2123063 pduJ 990282002074 pduJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 polyhedral body protein YP_005252597.1 2122788 D 990282 CDS YP_005252598.1 378989434 2123067..2123549 1 NC_016863.1 similar to Escherichia coli detox protein (AAC75510.1); propanediol utilization protein; polyhedral body protein 2123549 pduK 990282002075 pduK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 polyhedral body protein YP_005252598.1 2123067 D 990282 CDS YP_005252599.1 378989435 2123549..2124181 1 NC_016863.1 propanediol utilization protein 2124181 pduL 990282002076 pduL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 propanediol utilization protein YP_005252599.1 2123549 D 990282 CDS YP_005252600.1 378989436 2124178..2124669 1 NC_016863.1 propanediol utilization protein 2124669 pduM 990282002077 pduM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 propanediol utilization protein YP_005252600.1 2124178 D 990282 CDS YP_005252601.1 378989437 2124673..2124948 1 NC_016863.1 similar to Escherichia coli detox protein (AAC75509.1); propanediol utilization protein; polyhedral body protein 2124948 pduN 990282002078 pduN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 polyhedral body protein YP_005252601.1 2124673 D 990282 CDS YP_005252602.1 378989438 2124958..2125968 1 NC_016863.1 related to B12-dependent glycerol dehydratase; propanediol utilization protein 2125968 pduO 990282002079 pduO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 propanediol utilization protein YP_005252602.1 2124958 D 990282 CDS YP_005252603.1 378989439 2125965..2127359 1 NC_016863.1 similar to Escherichia coli ethanolamine utilization; similar to acetaldehyde dehydrogenase (AAC75508.1); propanediol utilization protein; CoA-dependent propionaldehyde dehydrogenase 2127359 pduP 990282002080 pduP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 CoA-dependent propionaldehyde dehydrogenase YP_005252603.1 2125965 D 990282 CDS YP_005252604.1 378989440 2127371..2128483 1 NC_016863.1 similar to Escherichia coli CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase (AAC74323.1); propanediol utilization protein; propanol dehydrogenase 2128483 pduQ 990282002081 pduQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 propanol dehydrogenase YP_005252604.1 2127371 D 990282 CDS YP_005252605.1 378989441 2128480..2129835 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC74701.1); propanediol utilization protein; polyhedral body protein 2129835 pduS 990282002082 pduS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 polyhedral body protein YP_005252605.1 2128480 D 990282 CDS YP_005252606.1 378989442 2129838..2130392 1 NC_016863.1 similar to Escherichia coli detox protein (AAC75510.1); propanediol utilization protein; polyhedral body protein 2130392 pduT 990282002083 pduT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 polyhedral body protein YP_005252606.1 2129838 D 990282 CDS YP_005252607.1 378989443 2130392..2130742 1 NC_016863.1 propanediol utilization protein PduU (SW:PDUU_SALTY); propanediol utilization protein; polyhedral body protein 2130742 pduU 990282002084 pduU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 polyhedral body protein YP_005252607.1 2130392 D 990282 CDS YP_005252608.1 378989444 2130747..2131199 1 NC_016863.1 propanediol utilization protein PduV (SW:PDUV_SALTY); propanediol utilization protein 2131199 pduV 990282002085 pduV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 propanediol utilization protein YP_005252608.1 2130747 D 990282 CDS YP_005252609.1 378989445 2131184..2132398 1 NC_016863.1 involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol; propionate kinase 2132398 pduW 990282002086 pduW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 propionate kinase YP_005252609.1 2131184 D 990282 CDS YP_005252610.1 378989446 2132456..2133358 1 NC_016863.1 propanediol utilization protein 2133358 pduX 990282002087 pduX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 propanediol utilization protein YP_005252610.1 2132456 D 990282 CDS YP_005252611.1 378989447 complement(2133392..2133727) 1 NC_016863.1 similar to Escherichia coli putative alpha helix protein (AAC75068.1); hypothetical protein 2133727 yeeX 990282002088 yeeX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252611.1 2133392 R 990282 CDS YP_005252612.1 378989448 complement(2133972..2135030) 1 NC_016863.1 putative inner membrane protein 2135030 yeeA 990282002089 yeeA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252612.1 2133972 R 990282 CDS YP_005252613.1 378989449 complement(2135149..2135616) 1 NC_016863.1 similar to DNA gyrase inhibitory protein (SW:GYRI_SALTY); DNA gyrase inhibitor 2135616 sbmC 990282002090 sbmC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA gyrase inhibitor YP_005252613.1 2135149 R 990282 CDS YP_005252614.1 378989450 complement(2135769..2136941) 1 NC_016863.1 removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 2136941 dacD 990282002091 dacD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-alanyl-D-alanine carboxypeptidase YP_005252614.1 2135769 R 990282 CDS YP_005252615.1 378989451 complement(2137065..2137829) 1 NC_016863.1 membrane-anchoring protein (SW:PHSC_SALTY); hydrogen sulfide production; thiosulfate reductase cytochrome B subunit 2137829 phsC 990282002092 phsC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiosulfate reductase cytochrome B subunit YP_005252615.1 2137065 R 990282 CDS YP_005252616.1 378989452 complement(2137826..2138404) 1 NC_016863.1 PhsB (SW:PHSB_SALTY); hydrogen sulfide production; iron-sulfur subunit; electron transfer; thiosulfate reductase electron transport protein 2138404 phsB 990282002093 phsB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiosulfate reductase electron transport protein YP_005252616.1 2137826 R 990282 CDS YP_005252617.1 378989453 complement(2138419..2140695) 1 NC_016863.1 membrane-anchoring protein (SW:PHSA_SALTY); hydrogen sulfide production; thiosulfate reductase 2140695 phsA 990282002094 phsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiosulfate reductase YP_005252617.1 2138419 R 990282 CDS YP_005252618.1 378989454 2141314..2143662 1 NC_016863.1 similar to protein from Salmonella dublin; translocated by SPI-1; type III secretion; secreted effector protein 2143662 sopA 990282002095 sopA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secreted effector protein YP_005252618.1 2141314 D 990282 CDS YP_005252619.1 378989455 2144005..2145435 1 NC_016863.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2145435 sbcB 990282002096 sbcB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exonuclease I YP_005252619.1 2144005 D 990282 CDS YP_005252620.1 378989456 complement(2145571..2146935) 1 NC_016863.1 similar to Escherichia coli putative amino acid/amine transport protein (AAC75075.1); APC family; putative amino acid transport protein 2146935 yeeF 990282002097 yeeF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative amino acid transport protein YP_005252620.1 2145571 R 990282 CDS YP_005252621.1 378989457 complement(2147215..2148129) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75076.1); LysR family; putative transcriptional regulator 2148129 yeeY 990282002098 yeeY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252621.1 2147215 R 990282 CDS YP_005252622.1 378989458 complement(2148175..2148999) 1 NC_016863.1 similar to Escherichia coli putative enzyme of sugar metabolism (AAC75077.1); putative dehydratase 2148999 yeeZ 990282002099 yeeZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dehydratase YP_005252622.1 2148175 R 990282 CDS YP_005252623.1 378989459 2149360..2150259 1 NC_016863.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2150259 hisG 990282002100 hisG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP phosphoribosyltransferase YP_005252623.1 2149360 D 990282 CDS YP_005252624.1 378989460 2150362..2151666 1 NC_016863.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2151666 hisD 990282002101 hisD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 histidinol dehydrogenase YP_005252624.1 2150362 D 990282 CDS YP_005252625.1 378989461 2151663..2152742 1 NC_016863.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2152742 hisC 990282002102 hisC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 histidinol-phosphate aminotransferase YP_005252625.1 2151663 D 990282 CDS YP_005252626.1 378989462 2152739..2153806 1 NC_016863.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2153806 hisB 990282002103 hisB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_005252626.1 2152739 D 990282 CDS YP_005252627.1 378989463 2153803..2154396 1 NC_016863.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthe; imidazole glycerol phosphate synthase subunit HisH 2154396 hisH 990282002104 hisH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 imidazole glycerol phosphate synthase subunit HisH YP_005252627.1 2153803 D 990282 CDS YP_005252628.1 378989464 2154396..2155133 1 NC_016863.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2155133 hisA 990282002105 hisA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_005252628.1 2154396 D 990282 CDS YP_005252629.1 378989465 2155115..2155891 1 NC_016863.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit act; imidazole glycerol phosphate synthase subunit HisF 2155891 hisF 990282002106 hisF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 imidazole glycerol phosphate synthase subunit HisF YP_005252629.1 2155115 D 990282 CDS YP_005252630.1 378989466 2155885..2156496 1 NC_016863.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynth; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2156496 hisI 990282002107 hisI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_005252630.1 2155885 D 990282 CDS YP_005252631.1 378989467 complement(2156577..2157560) 1 NC_016863.1 chain length determinant protein; polysaccharide antigen chainregulator (SW:WZZB_SALTY); regulator of length of O-antigen component of lipopolysaccharide chains; lipopolysaccharide O-antigen chain length regulator 2157560 wzzB 990282002108 wzzB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipopolysaccharide O-antigen chain length regulator YP_005252631.1 2156577 R 990282 CDS YP_005252632.1 378989468 complement(2157703..2158869) 1 NC_016863.1 UDP-glucose 6-dehydrogenase (SW:UDG_SALTY); UDP-glucose/GDP-mannose dehydrogenase 2158869 udg 990282002109 udg Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-glucose/GDP-mannose dehydrogenase YP_005252632.1 2157703 R 990282 CDS YP_005252633.1 378989469 complement(2159106..2160512) 1 NC_016863.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2160512 gnd 990282002110 gnd Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 6-phosphogluconate dehydrogenase YP_005252633.1 2159106 R 990282 CDS YP_005252634.1 378989470 complement(2160676..2162106) 1 NC_016863.1 undecaprenyl-phosphate galactosephosphotransferase (SW:RFBP_SALTY); mutation results in LPS side chain defect; undecaprenol-phosphate galactosephosphotransferase/O-antigen transferase 2162106 rfbP 990282002111 rfbP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 undecaprenol-phosphate galactosephosphotransferase/O-antigen transferase YP_005252634.1 2160676 R 990282 CDS YP_005252635.1 378989471 complement(2162178..2163611) 1 NC_016863.1 phosphomannomutase (SW:RFBK_SALTY); LPS side chain defect; phosphomannomutase 2163611 rfbK 990282002112 rfbK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphomannomutase YP_005252635.1 2162178 R 990282 CDS YP_005252636.1 378989472 complement(2163598..2165037) 1 NC_016863.1 mannose-1-phosphate guanylyltransferase GDP (SW:RFBM_SALTY); LPS side chain defect; mannose-1-phosphate guanylyltransferase 2165037 rfbM 990282002113 rfbM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 mannose-1-phosphate guanylyltransferase YP_005252636.1 2163598 R 990282 CDS YP_005252637.1 378989473 complement(2165038..2165982) 1 NC_016863.1 putative rhamnosyltransferase RfbN (SW:RFBN_SALTY); LPS side chain defect; rhamnosyl transferase 2165982 rfbN 990282002114 rfbN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 rhamnosyl transferase YP_005252637.1 2165038 R 990282 CDS YP_005252638.1 378989474 complement(2165983..2167044) 1 NC_016863.1 RFBU protein (SW:RFBU_SALTY); LPS side chain defect; mannosyl transferase 2167044 rfbU 990282002115 rfbU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 mannosyl transferase YP_005252638.1 2165983 R 990282 CDS YP_005252639.1 378989475 complement(2167364..2168365) 1 NC_016863.1 RFBV protein (SW:RFBV_SALTY); LPS side chain defect; abequosyltransferase 2168365 rfbV 990282002116 rfbV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 abequosyltransferase YP_005252639.1 2167364 R 990282 CDS YP_005252640.1 378989476 complement(2168370..2169662) 1 NC_016863.1 putative O-antigen transporter (SW:RFBX_SALTY); LPS side chain defect; putative O-antigen transferase 2169662 rfbX 990282002117 rfbX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative O-antigen transferase YP_005252640.1 2168370 R 990282 CDS YP_005252641.1 378989477 complement(2169744..2170643) 1 NC_016863.1 CDP-abequose synthase (SW:RFBJ_SALTY); LPS side chain defect; CDP-abequose synthase 2170643 rfbJ 990282002118 rfbJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 CDP-abequose synthase YP_005252641.1 2169744 R 990282 CDS YP_005252642.1 378989478 complement(2170671..2171984) 1 NC_016863.1 lipopolysaccharide biosynthesis protein RfbH (SW:RFBH_SALTY); LPS side chain defect; CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase 2171984 rfbH 990282002119 rfbH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase YP_005252642.1 2170671 R 990282 CDS YP_005252643.1 378989479 complement(2172011..2173090) 1 NC_016863.1 CDP-glucose 4,6-dehydratase (SW:RFBG_SALTY); LPS side chain defect; CDP glucose 4,6-dehydratase 2173090 rfbG 990282002120 rfbG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 CDP glucose 4,6-dehydratase YP_005252643.1 2172011 R 990282 CDS YP_005252644.1 378989480 complement(2173095..2173868) 1 NC_016863.1 glucose-1-phosphate cytidylyltransferase (SW:RFBF_SALTY); LPS side chain defect; glucose-1-phosphate cytidylyltransferase 2173868 rfbF 990282002121 rfbF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucose-1-phosphate cytidylyltransferase YP_005252644.1 2173095 R 990282 CDS YP_005252645.1 378989481 complement(2173865..2174857) 1 NC_016863.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 2174857 rfbI 990282002122 rfbI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 CDP-6-deoxy-delta-3,4-glucoseen reductase YP_005252645.1 2173865 R 990282 CDS YP_005252646.1 378989482 complement(2174863..2175414) 1 NC_016863.1 DTDP-4-dehydrorhamnose 3,5-epimerase (SW:RFBC_SALTY); dTDP-4-deoxyrhamnose 3,5 epimerase 2175414 rfbC 990282002123 rfbC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dTDP-4-deoxyrhamnose 3,5 epimerase YP_005252646.1 2174863 R 990282 CDS YP_005252647.1 378989483 complement(2175415..2176293) 1 NC_016863.1 glucose-1-phosphate thymidylyltransferase (SW:RFBA_SALTY); dTDP-glucose pyrophosphorylase 2176293 rfbA 990282002124 rfbA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dTDP-glucose pyrophosphorylase YP_005252647.1 2175415 R 990282 CDS YP_005252648.1 378989484 complement(2176341..2177240) 1 NC_016863.1 with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose; dTDP-4-dehydrorhamnose reductase 2177240 rfbD 990282002125 rfbD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dTDP-4-dehydrorhamnose reductase YP_005252648.1 2176341 R 990282 CDS YP_005252649.1 378989485 complement(2177240..2178325) 1 NC_016863.1 NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase 2178325 rfbB 990282002126 rfbB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dTDP-glucose-4,6-dehydratase YP_005252649.1 2177240 R 990282 CDS YP_005252650.1 378989486 complement(2178702..2179595) 1 NC_016863.1 together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalF 2179595 galF 990282002127 galF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UTP--glucose-1-phosphate uridylyltransferase subunit GalF YP_005252650.1 2178702 R 990282 CDS YP_005252651.1 378989487 complement(2179773..2181176) 1 NC_016863.1 WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; putative colanic acid biosynthesis protein 2181176 wcaM 990282002128 wcaM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative colanic acid biosynthesis protein YP_005252651.1 2179773 R 990282 CDS YP_005252652.1 378989488 complement(2181187..2182407) 1 NC_016863.1 putative colanic acid biosynthesis glycosyl transferase WcaL (SW:WCAL_SALTY); in colanic acid gene cluster; putative glycosyl transferase 2182407 wcaL 990282002129 wcaL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyl transferase YP_005252652.1 2181187 R 990282 CDS YP_005252653.1 378989489 complement(2182404..2183684) 1 NC_016863.1 similar to Escherichia coli putative galactokinase (AAC75106.1); in colanic acid gene cluster; putative pyruvyl transferase 2183684 wcaK 990282002130 wcaK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative pyruvyl transferase YP_005252653.1 2182404 R 990282 CDS YP_005252654.1 378989490 complement(2183706..2185184) 1 NC_016863.1 similar to Escherichia coli probable export protein (AAC75107.1); in colanic acid gene cluster; colanic acid exporter 2185184 wzxC 990282002131 wzxC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 colanic acid exporter YP_005252654.1 2183706 R 990282 CDS YP_005252655.1 378989491 complement(2185317..2186711) 1 NC_016863.1 WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; putative UDP-glucose lipid carrier transferase 2186711 wcaJ 990282002132 wcaJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative UDP-glucose lipid carrier transferase YP_005252655.1 2185317 R 990282 CDS YP_005252656.1 378989492 complement(2186765..2188135) 1 NC_016863.1 phosphomannomutase in colanic acid gene cluster (SW:MANB_SALTY); phosphomannomutase 2188135 cpsG 990282002133 cpsG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphomannomutase YP_005252656.1 2186765 R 990282 CDS YP_005252657.1 378989493 complement(2188246..2189688) 1 NC_016863.1 mannose-1-phosphate guanylyltransferase; GDP (SW:MANC_SALTY); in colanic acid gene cluster; mannose-1-phosphate guanylyltransferase 2189688 manC 990282002134 manC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 mannose-1-phosphate guanylyltransferase YP_005252657.1 2188246 R 990282 CDS YP_005252658.1 378989494 complement(2189685..2190908) 1 NC_016863.1 similar to Escherichia coli putative colanic biosynthesis glycosyl transferase (AAC75111.1); involved in in colanic acid biosynthesis; putative glycosyl transferase 2190908 wcaI 990282002135 wcaI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyl transferase YP_005252658.1 2189685 R 990282 CDS YP_005252659.1 378989495 complement(2190905..2191378) 1 NC_016863.1 similar to Escherichia coli GDP-mannose mannosyl hydrolase (AAC75112.1); in colanic acid biosynthesis; GDP-mannose mannosyl hydrolase 2191378 wcaH 990282002136 wcaH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GDP-mannose mannosyl hydrolase YP_005252659.1 2190905 R 990282 CDS YP_005252660.1 378989496 complement(2191381..2192346) 1 NC_016863.1 similar to Escherichia coli putative nucleotide di-P-sugar epimerase/dehydratase (AAC75113.1); GDP fucose synthetase in colanic acid biosyntheis; GDP-fucose synthetase 2192346 wcaG 990282002137 wcaG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GDP-fucose synthetase YP_005252660.1 2191381 R 990282 CDS YP_005252661.1 378989497 complement(2192349..2193470) 1 NC_016863.1 similar to Escherichia coli GDP-D-mannose dehydratase (AAC75114.1); colanic acid gene cluster; GDP-D-mannose dehydratase 2193470 gmd 990282002138 gmd Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GDP-D-mannose dehydratase YP_005252661.1 2192349 R 990282 CDS YP_005252662.1 378989498 complement(2193494..2194048) 1 NC_016863.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); putative colanic acid biosynthesis acetyltransferase WcaF 2194048 wcaF 990282002139 wcaF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative colanic acid biosynthesis acetyltransferase WcaF YP_005252662.1 2193494 R 990282 CDS YP_005252663.1 378989499 complement(2194064..2194810) 1 NC_016863.1 similar to Escherichia coli putative colanic acid biosynthesis glycosyl transferase (AAC75116.1); involved in colanic acid biosynthesis; putative glycosyl transferase 2194810 wcaE 990282002140 wcaE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyl transferase YP_005252663.1 2194064 R 990282 CDS YP_005252664.1 378989500 complement(2194823..2196037) 1 NC_016863.1 essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; putative colanic acid biosynthesis protein 2196037 wcaD 990282002141 wcaD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative colanic acid biosynthesis protein YP_005252664.1 2194823 R 990282 CDS YP_005252665.1 378989501 complement(2196012..2197229) 1 NC_016863.1 similar to Escherichia coli putative glycosyl transferase (AAC75118.1); involved in colanic acid biosynthesis; putative glycosyl transferase 2197229 wcaC 990282002142 wcaC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyl transferase YP_005252665.1 2196012 R 990282 CDS YP_005252666.1 378989502 complement(2197226..2197714) 1 NC_016863.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and represse; putative colanic acid biosynthesis acetyltransferase WcaB 2197714 wcaB 990282002143 wcaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative colanic acid biosynthesis acetyltransferase WcaB YP_005252666.1 2197226 R 990282 CDS YP_005252667.1 378989503 complement(2197717..2198559) 1 NC_016863.1 similar to Escherichia coli putative regulator (AAC75120.1); involved in colanic acid biosynthesis; putative glycosyl transferase 2198559 wcaA 990282002144 wcaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyl transferase YP_005252667.1 2197717 R 990282 CDS YP_005252668.1 378989504 complement(2198646..2200805) 1 NC_016863.1 Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase 2200805 wzc 990282002145 wzc Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tyrosine kinase YP_005252668.1 2198646 R 990282 CDS YP_005252669.1 378989505 complement(2200802..2201251) 1 NC_016863.1 Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; tyrosine phosphatase 2201251 wzb 990282002146 wzb Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tyrosine phosphatase YP_005252669.1 2200802 R 990282 CDS YP_005252670.1 378989506 complement(2201257..2202396) 1 NC_016863.1 similar to Escherichia coli putative polysaccharide export protein (AAC75123.1); putative outer membrane polysaccharide export protein 2202396 wza 990282002147 wza Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane polysaccharide export protein YP_005252670.1 2201257 R 990282 CDS YP_005252671.1 378989507 2203071..2204651 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75124.1); putative inner membrane protein 2204651 yegH 990282002148 yegH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252671.1 2203071 D 990282 CDS YP_005252672.1 378989508 complement(2204737..2206593) 1 NC_016863.1 YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered as; putative assembly protein 2206593 asmA 990282002149 asmA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative assembly protein YP_005252672.1 2204737 R 990282 CDS YP_005252673.1 378989509 complement(2206632..2207213) 1 NC_016863.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2207213 dcd 990282002150 dcd Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 deoxycytidine triphosphate deaminase YP_005252673.1 2206632 R 990282 CDS YP_005252674.1 378989510 complement(2207304..2207945) 1 NC_016863.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2207945 udk 990282002151 udk Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 uridine kinase YP_005252674.1 2207304 R 990282 CDS YP_005252675.1 378989511 2208276..2211266 1 NC_016863.1 similar to Escherichia coli putative sensor-type protein (AAC75128.1); contains PAS/PAC domain; domain 1/2; diguanylate cyclase 2211266 yegE 990282002152 yegE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 diguanylate cyclase YP_005252675.1 2208276 D 990282 CDS YP_005252676.1 378989512 2212236..2213588 1 NC_016863.1 similar to Escherichia coli putative heat shock protein (AAC75130.1); Hsp70/DnaK; putative chaperone 2213588 yegD 990282002154 yegD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative chaperone YP_005252676.1 2212236 D 990282 CDS YP_005252677.1 378989513 2214029..2215270 1 NC_016863.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtA 2215270 990282002155 STMUK_2156 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multidrug efflux system subunit MdtA YP_005252677.1 2214029 D 990282 CDS YP_005252678.1 378989514 2215270..2218392 1 NC_016863.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtB 2218392 yegN 990282002156 yegN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multidrug efflux system subunit MdtB YP_005252678.1 2215270 D 990282 CDS YP_005252679.1 378989515 2218393..2221473 1 NC_016863.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtC 2221473 yegO 990282002157 yegO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multidrug efflux system subunit MdtC YP_005252679.1 2218393 D 990282 CDS YP_005252680.1 378989516 2221470..2222882 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75138.1); MFS family; multidrug efflux system protein MdtE 2222882 yegB 990282002158 yegB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multidrug efflux system protein MdtE YP_005252680.1 2221470 D 990282 CDS YP_005252681.1 378989517 2222882..2224285 1 NC_016863.1 similar to Escherichia coli sensor protein for BaeR (AAC75139.1); in two-component regulatory system; signal transduction histidine-protein kinase BaeS 2224285 baeS 990282002159 baeS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 signal transduction histidine-protein kinase BaeS YP_005252681.1 2222882 D 990282 CDS YP_005252682.1 378989518 2224282..2225004 1 NC_016863.1 response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; DNA-binding transcriptional regulator BaeR 2225004 baeR 990282002160 baeR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator BaeR YP_005252682.1 2224282 D 990282 CDS YP_005252683.1 378989519 2225591..2226475 1 NC_016863.1 putative cytoplasmic protein 2226475 990282002161 STMUK_2162 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252683.1 2225591 D 990282 CDS YP_005252684.1 378989520 2226475..2227191 1 NC_016863.1 putative inner membrane protein 2227191 990282002162 STMUK_2163 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252684.1 2226475 D 990282 CDS YP_005252685.1 378989521 2227202..2229313 1 NC_016863.1 putative inner membrane protein 2229313 990282002163 STMUK_2164 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252685.1 2227202 D 990282 CDS YP_005252686.1 378989522 2229429..2230790 1 NC_016863.1 putative protease 2230790 yegQ 990282002164 yegQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative protease YP_005252686.1 2229429 D 990282 CDS YP_005252687.1 378989523 2231241..2232287 1 NC_016863.1 putative cytoplasmic protein 2232287 990282002165 STMUK_2166 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252687.1 2231241 D 990282 CDS YP_005252688.1 378989524 complement(2232323..2232739) 1 NC_016863.1 putative cytoplasmic protein 2232739 990282002166 STMUK_2167 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252688.1 2232323 R 990282 CDS YP_005252689.1 378989525 complement(2232861..2233196) 1 NC_016863.1 putative inner membrane protein 2233196 990282002167 STMUK_2168 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252689.1 2232861 R 990282 CDS YP_005252690.1 378989526 2233758..2234657 1 NC_016863.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2234657 yegS 990282002168 yegS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipid kinase YP_005252690.1 2233758 D 990282 CDS YP_005252691.1 378989527 complement(2234710..2235762) 1 NC_016863.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 2235762 fbaB 990282002169 fbaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fructose-bisphosphate aldolase YP_005252691.1 2234710 R 990282 CDS YP_005252692.1 378989528 2236016..2237287 1 NC_016863.1 similar to Escherichia coli putative nucleoside permease protein (AAC75159.1); MFS family; putative transport protein 2237287 yegT 990282002170 yegT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005252692.1 2236016 D 990282 CDS YP_005252693.1 378989529 2237284..2238288 1 NC_016863.1 putative glycohydrolase 2238288 yegU 990282002171 yegU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycohydrolase YP_005252693.1 2237284 D 990282 CDS YP_005252694.1 378989530 2238285..2239250 1 NC_016863.1 similar to Escherichia coli putative kinase (AAC75161.1); putative sugar kinase 2239250 yegV 990282002172 yegV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar kinase YP_005252694.1 2238285 D 990282 CDS YP_005252695.1 378989531 complement(2239224..2239970) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator (AAC75162.1); GntR family; putative regulatory protein 2239970 yegW 990282002173 yegW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005252695.1 2239224 R 990282 CDS YP_005252696.1 378989532 complement(2240006..2240806) 1 NC_016863.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 2240806 thiD 990282002174 thiD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphomethylpyrimidine kinase YP_005252696.1 2240006 R 990282 CDS YP_005252697.1 378989533 complement(2240793..2241590) 1 NC_016863.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 2241590 thiM 990282002175 thiM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydroxyethylthiazole kinase YP_005252697.1 2240793 R 990282 CDS YP_005252698.1 378989534 2242000..2242314 1 NC_016863.1 hypothetical protein 2242314 990282002176 STMUK_2177 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252698.1 2242000 D 990282 CDS YP_005252699.1 378989535 complement(2242577..2243584) 1 NC_016863.1 similar to Escherichia coli putative type-1 fimbrial protein (AAC75169.1); putative outer membrane lipoprotein 2243584 stcD 990282002177 stcD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005252699.1 2242577 R 990282 CDS YP_005252700.1 378989536 complement(2243600..2246089) 1 NC_016863.1 similar to Escherichia coli putative outer membrane protein (AAC75170.1); putative outer membrane protein 2246089 stcC 990282002178 stcC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005252700.1 2243600 R 990282 CDS YP_005252701.1 378989537 complement(2246103..2246786) 1 NC_016863.1 similar to Escherichia coli putative chaperone (AAC75171.1); putative periplasmic chaperone protein 2246786 stcB 990282002179 stcB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative periplasmic chaperone protein YP_005252701.1 2246103 R 990282 CDS YP_005252702.1 378989538 complement(2246842..2247372) 1 NC_016863.1 similar to Escherichia coli putative fimbrial-like protein (AAC75172.1); putative fimbrial-like protein 2247372 stcA 990282002180 stcA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial-like protein YP_005252702.1 2246842 R 990282 CDS YP_005252703.1 378989539 complement(2247651..2247932) 1 NC_016863.1 putative outer membrane protein 2247932 yehE 990282002181 yehE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005252703.1 2247651 R 990282 CDS YP_005252704.1 378989540 complement(2248210..2249319) 1 NC_016863.1 similar to Escherichia coli putative ATPase (AAC75174.1); putative ATPase 2249319 mrp 990282002182 mrp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ATPase YP_005252704.1 2248210 R 990282 CDS YP_005252705.1 378989541 2249484..2251517 1 NC_016863.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold; methionyl-tRNA synthetase 2251517 metG 990282002183 metG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 methionyl-tRNA synthetase YP_005252705.1 2249484 D 990282 CDS YP_005252706.1 378989542 2251758..2252216 1 NC_016863.1 putative lipoprotein 2252216 yehR 990282002184 yehR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative lipoprotein YP_005252706.1 2251758 D 990282 CDS YP_005252707.1 378989543 2252388..2252918 1 NC_016863.1 hypothetical 16.9 kDa lipoprotein precursor; hypothetical protein 2252918 990282002185 STMUK_2186 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252707.1 2252388 D 990282 CDS YP_005252708.1 378989544 complement(2252975..2253442) 1 NC_016863.1 putative cytoplasmic protein 2253442 yehS 990282002186 yehS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252708.1 2252975 R 990282 CDS YP_005252709.1 378989545 complement(2253489..2254208) 1 NC_016863.1 unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT 2254208 yehT 990282002187 yehT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative two-component response-regulatory protein YehT YP_005252709.1 2253489 R 990282 CDS YP_005252710.1 378989546 complement(2254205..2255890) 1 NC_016863.1 similar to Escherichia coli putative 2-component sensor protein (AAC75187.1); putative sensor kinase 2255890 yehU 990282002188 yehU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sensor kinase YP_005252710.1 2254205 R 990282 CDS YP_005252711.1 378989547 2256113..2256844 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator (AAC75188.1); MerR family; putative transcriptional repressor 2256844 yehV 990282002189 yehV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional repressor YP_005252711.1 2256113 D 990282 CDS YP_005252712.1 378989548 2256904..2257011 1 NC_016863.1 hypothetical protein 2257011 990282002190 STMUK_2191 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252712.1 2256904 D 990282 CDS YP_005252713.1 378989549 complement(2256992..2257723) 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein (AAC75189.1); putative ABC-type proline/glycine betaine transport system permease component 2257723 yehW 990282002191 yehW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type proline/glycine betaine transport system permease component YP_005252713.1 2256992 R 990282 CDS YP_005252714.1 378989550 complement(2257707..2258654) 1 NC_016863.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC75190.1); putative ABC-type proline/glycine betaine transport system ATPase component 2258654 yehX 990282002192 yehX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type proline/glycine betaine transport system ATPase component YP_005252714.1 2257707 R 990282 CDS YP_005252715.1 378989551 complement(2258647..2259816) 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein (AAC75191.1); putative ABC-type proline/glycine betaine transport system permease component 2259816 yehY 990282002193 yehY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type proline/glycine betaine transport system permease component YP_005252715.1 2258647 R 990282 CDS YP_005252716.1 378989552 complement(2259820..2260737) 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein (AAC75192.1); putative ABC superfamily binding protein; possibly glycine betaine choline transport for osmoprotection; putative transport protein 2260737 yehZ 990282002194 yehZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005252716.1 2259820 R 990282 CDS YP_005252717.1 378989553 complement(2260918..2263215) 1 NC_016863.1 periplasmic beta-glucosidase precursor (SW:BGLX_SALTY); periplasmic beta-D-glucoside glucohydrolase 2263215 bglX 990282002195 bglX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 periplasmic beta-D-glucoside glucohydrolase YP_005252717.1 2260918 R 990282 CDS YP_005252718.1 378989554 2263482..2265212 1 NC_016863.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 2265212 dld 990282002196 dld Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-lactate dehydrogenase YP_005252718.1 2263482 D 990282 CDS YP_005252719.1 378989555 complement(2265270..2266217) 1 NC_016863.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 2266217 pbpG 990282002197 pbpG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-alanyl-D-alanine endopeptidase YP_005252719.1 2265270 R 990282 CDS YP_005252720.1 378989556 complement(2266383..2266970) 1 NC_016863.1 putative transport protein 2266970 yohC 990282002198 yohC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005252720.1 2266383 R 990282 CDS YP_005252721.1 378989557 2267102..2267698 1 NC_016863.1 DedA family; hypothetical protein 2267698 yohD 990282002199 yohD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252721.1 2267102 D 990282 CDS YP_005252722.1 378989558 complement(2267747..2268508) 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC75198.1); acetoin dehydrogenase 2268508 yohF 990282002200 yohF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetoin dehydrogenase YP_005252722.1 2267747 R 990282 CDS YP_005252723.1 378989559 complement(2268574..2270010) 1 NC_016863.1 may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance outer membrane protein MdtQ 2270010 yohG 990282002201 yohG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multidrug resistance outer membrane protein MdtQ YP_005252723.1 2268574 R 990282 CDS YP_005252724.1 378989560 2270201..2270398 1 NC_016863.1 putative cytoplasmic protein 2270398 990282002202 STMUK_2203 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252724.1 2270201 D 990282 CDS YP_005252725.1 378989561 complement(2270469..2271407) 1 NC_016863.1 similar to Escherichia coli putative nitrogen regulatory protein (AAC75201.1); tRNA-dihydrouridine synthase C 2271407 yohI 990282002203 yohI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA-dihydrouridine synthase C YP_005252725.1 2270469 R 990282 CDS YP_005252726.1 378989562 complement(2271516..2272709) 1 NC_016863.1 catalyzes the formation of catechol from salicylate; salicylate hydroxylase 2272709 990282002204 STMUK_2205 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 salicylate hydroxylase YP_005252726.1 2271516 R 990282 CDS YP_005252727.1 378989563 complement(2272724..2273368) 1 NC_016863.1 similar to Escherichia coli regulator of transcription; stringent starvation protein A (AAC76261.1); putative glutathione S-transferase 2273368 990282002205 STMUK_2206 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glutathione S-transferase YP_005252727.1 2272724 R 990282 CDS YP_005252728.1 378989564 complement(2273377..2274078) 1 NC_016863.1 similar to Escherichia coli putative isomerase (AAC74264.1); putative flutathione S-transferase 2274078 990282002206 STMUK_2207 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative flutathione S-transferase YP_005252728.1 2273377 R 990282 CDS YP_005252729.1 378989565 complement(2274094..2275131) 1 NC_016863.1 putative 1,2-dioxygenase 2275131 990282002207 STMUK_2208 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative 1,2-dioxygenase YP_005252729.1 2274094 R 990282 CDS YP_005252730.1 378989566 complement(2275143..2276501) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC73456.1); putative sugar transporter 2276501 990282002208 STMUK_2209 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar transporter YP_005252730.1 2275143 R 990282 CDS YP_005252731.1 378989567 2276627..2277535 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74504.1); LysR family; putative transcriptional regulator 2277535 990282002209 STMUK_2210 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252731.1 2276627 D 990282 CDS YP_005252732.1 378989568 2277667..2278065 1 NC_016863.1 hypothetical protein 2278065 yohJ 990282002210 yohJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252732.1 2277667 D 990282 CDS YP_005252733.1 378989569 2278062..2278757 1 NC_016863.1 similar to Escherichia coli putative seritonin transporter (AAC75203.1); hypothetical protein 2278757 yohK 990282002211 yohK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252733.1 2278062 D 990282 CDS YP_005252734.1 378989570 2278911..2279795 1 NC_016863.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2279795 cdd 990282002212 cdd Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytidine deaminase YP_005252734.1 2278911 D 990282 CDS YP_005252735.1 378989571 2279972..2280691 1 NC_016863.1 similar to Escherichia coli vancomycin sensitivity (AAC75205.1); hypothetical protein 2280691 sanA 990282002213 sanA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252735.1 2279972 D 990282 CDS YP_005252736.1 378989572 2280688..2280933 1 NC_016863.1 putative inner membrane protein 2280933 990282002214 STMUK_2215 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252736.1 2280688 D 990282 CDS YP_005252737.1 378989573 2281138..2282379 1 NC_016863.1 similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 2282379 990282002215 STMUK_2216 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidoreductase YP_005252737.1 2281138 D 990282 CDS YP_005252738.1 378989574 2282373..2283608 1 NC_016863.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 2283608 yeiA 990282002216 yeiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dihydropyrimidine dehydrogenase YP_005252738.1 2282373 D 990282 CDS YP_005252739.1 378989575 complement(2283683..2284693) 1 NC_016863.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane protein 2284693 mglC 990282002217 mglC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 beta-methylgalactoside transporter inner membrane protein YP_005252739.1 2283683 R 990282 CDS YP_005252740.1 378989576 complement(2284709..2286229) 1 NC_016863.1 with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein 2286229 mglA 990282002218 mglA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 galactose/methyl galaxtoside transporter ATP-binding protein YP_005252740.1 2284709 R 990282 CDS YP_005252741.1 378989577 complement(2286363..2287361) 1 NC_016863.1 D-galactose-binding periplasmic protein precursor; GDP; D-galactose/D-glucose binding protein; GGBP (SW:DGAL_SALTY); ABC superfamily periplasmic protein; galactose transport protein 2287361 mglB 990282002219 mglB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 galactose transport protein YP_005252741.1 2286363 R 990282 CDS YP_005252742.1 378989578 complement(2287860..2288882) 1 NC_016863.1 negative regulator of the mglBAC operon for galactose utilization; DNA-binding transcriptional regulator GalS 2288882 galS 990282002220 galS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator GalS YP_005252742.1 2287860 R 990282 CDS YP_005252743.1 378989579 complement(2289032..2290174) 1 NC_016863.1 hypothetical protein 2290174 yeiB 990282002221 yeiB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252743.1 2289032 R 990282 CDS YP_005252744.1 378989580 complement(2290189..2290857) 1 NC_016863.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2290857 folE 990282002222 folE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GTP cyclohydrolase I YP_005252744.1 2290189 R 990282 CDS YP_005252745.1 378989581 2291187..2292044 1 NC_016863.1 similar to Escherichia coli putative esterase (AAC75215.1); putative esterase 2292044 yeiG 990282002223 yeiG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative esterase YP_005252745.1 2291187 D 990282 CDS YP_005252746.1 378989582 complement(2292033..2292422) 1 NC_016863.1 putative transcriptional regulator 2292422 990282002224 STMUK_2225 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252746.1 2292033 R 990282 CDS YP_005252747.1 378989583 complement(2292427..2293794) 1 NC_016863.1 similar to Escherichia coli L-serine deaminase (AAC74884.1); putative L-serine dehydratase 2293794 990282002225 STMUK_2226 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative L-serine dehydratase YP_005252747.1 2292427 R 990282 CDS YP_005252748.1 378989584 2294011..2294898 1 NC_016863.1 similar to Escherichia coli 3-phosphoserine phosphatase (AAC77341.1); putative phosphoserine phosphatase 2294898 990282002226 STMUK_2227 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphoserine phosphatase YP_005252748.1 2294011 D 990282 CDS YP_005252749.1 378989585 2294931..2296253 1 NC_016863.1 similar to Escherichia coli regulator of uhpT (AAC76690.1); putative regulatory protein 2296253 990282002227 STMUK_2228 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005252749.1 2294931 D 990282 CDS YP_005252750.1 378989586 complement(2296297..2298288) 1 NC_016863.1 Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein; colicin I receptor 2298288 cirA 990282002228 cirA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 colicin I receptor YP_005252750.1 2296297 R 990282 CDS YP_005252751.1 378989587 complement(2298633..2300102) 1 NC_016863.1 similar to Escherichia coli lysine-specific permease (AAC75217.1); APC family; lysine transporter 2300102 lysP 990282002229 lysP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lysine transporter YP_005252751.1 2298633 R 990282 CDS YP_005252752.1 378989588 complement(2300292..2301155) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75218.1); LysR family; putative DNA-binding transcriptional regulator 2301155 yeiE 990282002230 yeiE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA-binding transcriptional regulator YP_005252752.1 2300292 R 990282 CDS YP_005252753.1 378989589 2301276..2302325 1 NC_016863.1 putative inner membrane protein 2302325 yeiH 990282002231 yeiH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252753.1 2301276 D 990282 CDS YP_005252754.1 378989590 2302404..2303261 1 NC_016863.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2303261 nfo 990282002232 nfo Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 endonuclease IV YP_005252754.1 2302404 D 990282 CDS YP_005252755.1 378989591 complement(2303326..2305014) 1 NC_016863.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group t; PTS system fructose-specific transporter subunit IIBC 2305014 fruA 990282002233 fruA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system fructose-specific transporter subunit IIBC YP_005252755.1 2303326 R 990282 CDS YP_005252756.1 378989592 complement(2305031..2305969) 1 NC_016863.1 converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase 2305969 fruK 990282002234 fruK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 1-phosphofructokinase YP_005252756.1 2305031 R 990282 CDS YP_005252757.1 378989593 complement(2305969..2307099) 1 NC_016863.1 phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then tra; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein 2307099 fruF 990282002235 fruF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein YP_005252757.1 2305969 R 990282 CDS YP_005252758.1 378989594 complement(2307167..2307274) 1 NC_016863.1 similar to hypothetical protein SPAB_00801 (Pid: YP_001587058.1).; hypothetical protein 2307274 990282002236 STMUK_2237 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252758.1 2307167 R 990282 CDS YP_005252759.1 378989595 2307468..2308649 1 NC_016863.1 sugar efflux transporter B (SW:SETB_SALTY); proton efflux pump 2308649 setB 990282002237 setB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 proton efflux pump YP_005252759.1 2307468 D 990282 CDS YP_005252760.1 378989596 complement(2308714..2309379) 1 NC_016863.1 putative inner membrane protein 2309379 990282002238 STMUK_2239 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252760.1 2308714 R 990282 CDS YP_005252761.1 378989597 complement(2309381..2309503) 1 NC_016863.1 putative inner membrane protein 2309503 990282002239 STMUK_2240 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252761.1 2309381 R 990282 CDS YP_005252762.1 378989598 2310238..2311041 1 NC_016863.1 Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 2311041 yeiP 990282002240 yeiP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 elongation factor P YP_005252762.1 2310238 D 990282 CDS YP_005252763.1 378989599 2311254..2312240 1 NC_016863.1 putative cobalamin biosynthetic protein 2312240 yeiR 990282002241 yeiR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cobalamin biosynthetic protein YP_005252763.1 2311254 D 990282 CDS YP_005252764.1 378989600 2312270..2312989 1 NC_016863.1 putative permease 2312989 yeiU 990282002242 yeiU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005252764.1 2312270 D 990282 CDS YP_005252765.1 378989601 2313403..2313975 1 NC_016863.1 by similarity, Spr seems to have peptidase activity; involved in thermoresistance; putative outer membrane lipoprotein 2313975 spr 990282002243 spr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005252765.1 2313403 D 990282 CDS YP_005252766.1 378989602 2314301..2315857 1 NC_016863.1 involved in resistance to lambda and N4 phages; hypothetical protein 2315857 rtn 990282002244 rtn Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252766.1 2314301 D 990282 CDS YP_005252767.1 378989603 2315964..2317769 1 NC_016863.1 putative ABC transporter periplasmic binding protein 2317769 yejA 990282002245 yejA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter periplasmic binding protein YP_005252767.1 2315964 D 990282 CDS YP_005252768.1 378989604 2317779..2318873 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein (AAC75239.1); putative ABC-type dipeptide/oligopeptide/nickel transport system permease 2318873 yejB 990282002246 yejB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type dipeptide/oligopeptide/nickel transport system permease YP_005252768.1 2317779 D 990282 CDS YP_005252769.1 378989605 2318873..2319898 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein (AAC75240.1); putative ABC-type dipeptide/oligopeptide/nickel transport system permease component 2319898 yejE 990282002247 yejE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type dipeptide/oligopeptide/nickel transport system permease component YP_005252769.1 2318873 D 990282 CDS YP_005252770.1 378989606 2319900..2321489 1 NC_016863.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC75241.1); contains duplicated ATPase domain; ABC transporter ATP-binding protein 2321489 yejF 990282002248 yejF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ABC transporter ATP-binding protein YP_005252770.1 2319900 D 990282 CDS YP_005252771.1 378989607 complement(2321493..2321837) 1 NC_016863.1 hypothetical protein 2321837 yejG 990282002249 yejG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252771.1 2321493 R 990282 CDS YP_005252772.1 378989608 complement(2322228..2323418) 1 NC_016863.1 Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system protein 2323418 bcr 990282002250 bcr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bicyclomycin/multidrug efflux system protein YP_005252772.1 2322228 R 990282 CDS YP_005252773.1 378989609 complement(2323446..2324141) 1 NC_016863.1 catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A 2324141 rsuA 990282002251 rsuA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 16S rRNA pseudouridylate synthase A YP_005252773.1 2323446 R 990282 CDS YP_005252774.1 378989610 2324293..2326053 1 NC_016863.1 similar to Escherichia coli putative ATP-dependent helicase (AAC75245.1); putative ATP-dependent helicase 2326053 yejH 990282002252 yejH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ATP-dependent helicase YP_005252774.1 2324293 D 990282 CDS YP_005252775.1 378989611 2326178..2326462 1 NC_016863.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress respo; 50S ribosomal protein L25 2326462 rplY 990282002253 rplY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L25 YP_005252775.1 2326178 D 990282 CDS YP_005252776.1 378989612 complement(2326571..2327191) 1 NC_016863.1 putative inner membrane protein 2327191 990282002254 STMUK_2255 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252776.1 2326571 R 990282 CDS YP_005252777.1 378989613 complement(2327219..2328226) 1 NC_016863.1 present in spermidine nucleoids; nucleoid-associated protein NdpA 2328226 yejK 990282002255 yejK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nucleoid-associated protein NdpA YP_005252777.1 2327219 R 990282 CDS YP_005252778.1 378989614 2328406..2328633 1 NC_016863.1 hypothetical protein 2328633 yejL 990282002256 yejL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252778.1 2328406 D 990282 CDS YP_005252779.1 378989615 2328665..2330425 1 NC_016863.1 hypothetical protein in rplY-proL intergenic region (SW:YEJM_SALTY); alkaline phosphatase superfamily; putative hydrolase 2330425 yejM 990282002257 yejM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase YP_005252779.1 2328665 D 990282 CDS YP_005252780.1 378989616 complement(2330706..2331209) 1 NC_016863.1 putative peptidase UmuD; similar to Escherichia coli SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC (AAC74267.1); DNA polymerase V subunit 2331209 990282002259 STMUK_2260 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase V subunit YP_005252780.1 2330706 R 990282 CDS YP_005252781.1 378989617 2331237..2331527 1 NC_016863.1 similar to virulence protein MsgA (SW:MSGA_SALTY); similar to STM1241; ssrB-regulated factor; virulence protein 2331527 990282002260 STMUK_2261 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 virulence protein YP_005252781.1 2331237 D 990282 CDS YP_005252782.1 378989618 2331875..2333704 1 NC_016863.1 O-antigen five; acetylation of the O-antigen (LPS); O-antigen acetylase 2333704 oafA 990282002261 oafA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 O-antigen acetylase YP_005252782.1 2331875 D 990282 CDS YP_005252783.1 378989619 complement(2333758..2334201) 1 NC_016863.1 putative cytoplasmic protein 2334201 990282002262 STMUK_2263 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252783.1 2333758 R 990282 CDS YP_005252784.1 378989620 complement(2334579..2335106) 1 NC_016863.1 putative phage tail fiber assembly protein 2335106 990282002263 STMUK_2264 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage tail fiber assembly protein YP_005252784.1 2334579 R 990282 CDS YP_005252785.1 378989621 complement(2335109..2336350) 1 NC_016863.1 hypothetical protein 2336350 990282002264 STMUK_2265 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252785.1 2335109 R 990282 CDS YP_005252786.1 378989622 complement(2336411..2336929) 1 NC_016863.1 hypothetical protein 2336929 990282002265 STMUK_2266 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252786.1 2336411 R 990282 CDS YP_005252787.1 378989623 complement(2336943..2337272) 1 NC_016863.1 putative inner membrane protein 2337272 990282002266 STMUK_2267 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252787.1 2336943 R 990282 CDS YP_005252788.1 378989624 2337569..2338900 1 NC_016863.1 hypothetical protein 2338900 990282002267 STMUK_2268 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252788.1 2337569 D 990282 CDS YP_005252789.1 378989625 complement(2338929..2339297) 1 NC_016863.1 similar to antiterminator protein Q of phage P5; putative phage antiterminator 2339297 990282002268 STMUK_2269 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage antiterminator YP_005252789.1 2338929 R 990282 CDS YP_005252790.1 378989626 complement(2339312..2340301) 1 NC_016863.1 putative cytoplasmic protein 2340301 990282002269 STMUK_2270 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252790.1 2339312 R 990282 CDS YP_005252791.1 378989627 complement(2340309..2340539) 1 NC_016863.1 similar to hypothetical protein SC1204 (Pid: YP_216191.1).; hypothetical protein 2340539 990282002270 STMUK_2271 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252791.1 2340309 R 990282 CDS YP_005252792.1 378989628 complement(2340630..2342996) 1 NC_016863.1 induced by the SPI-2 regulator ssrA/B; secreted by SPI-2; hypothetical protein 2342996 sspH2 990282002271 sspH2 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252792.1 2340630 R 990282 CDS YP_005252793.1 378989629 complement(2343165..2343368) 1 NC_016863.1 putative phage tail fiber protein 2343368 990282002272 STMUK_2273 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage tail fiber protein YP_005252793.1 2343165 R 990282 CDS YP_005252794.1 378989630 complement(2343665..2344456) 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC74454.1); putative tail fiber protein of phage 2344456 990282002273 STMUK_2274 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative tail fiber protein of phage YP_005252794.1 2343665 R 990282 CDS YP_005252795.1 378989631 2344759..2344962 1 NC_016863.1 similar to virulence protein MsgA (SW:MSGA_SALTY); similar to STM1241; virulence protein 2344962 990282002274 STMUK_2275 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 virulence protein YP_005252795.1 2344759 D 990282 CDS YP_005252796.1 378989632 complement(2345154..2345717) 1 NC_016863.1 putative outer membrane protein 2345717 990282002275 STMUK_2276 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005252796.1 2345154 R 990282 CDS YP_005252797.1 378989633 2346447..2347094 1 NC_016863.1 nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; transcriptional regulator NarP 2347094 narP 990282002276 narP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator NarP YP_005252797.1 2346447 D 990282 CDS YP_005252798.1 378989634 complement(2347138..2348181) 1 NC_016863.1 similar to Escherichia coli possible subunit of heme lyase (AAC75254.1); involved in cytochrome c-type biogenesis; putative heme lyase subunit 2348181 ccmH 990282002277 ccmH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative heme lyase subunit YP_005252798.1 2347138 R 990282 CDS YP_005252799.1 378989635 complement(2348178..2348735) 1 NC_016863.1 similar to Escherichia coli disulfide oxidoreductase; biogenesis of cytochrome c (AAC75255.1); heme lyase disulfide oxidoreductase 2348735 ccmG 990282002278 ccmG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 heme lyase disulfide oxidoreductase YP_005252799.1 2348178 R 990282 CDS YP_005252800.1 378989636 complement(2348732..2350663) 1 NC_016863.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocyt; cytochrome c-type biogenesis protein CcmE 2350663 ccmE 990282002279 ccmE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome c-type biogenesis protein CcmE YP_005252800.1 2348732 R 990282 CDS YP_005252801.1 378989637 complement(2350660..2351139) 1 NC_016863.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocyt; cytochrome c-type biogenesis protein CcmE 2351139 ccmE 990282002280 ccmE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome c-type biogenesis protein CcmE YP_005252801.1 2350660 R 990282 CDS YP_005252802.1 378989638 complement(2351136..2351348) 1 NC_016863.1 similar to Escherichia coli heme exporter protein C (AAC75258.1); cytochrome c-type biogenesis protein; heme exporter protein C 2351348 ccmD 990282002281 ccmD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 heme exporter protein C YP_005252802.1 2351136 R 990282 CDS YP_005252803.1 378989639 complement(2351345..2352082) 1 NC_016863.1 similar to Escherichia coli heme exporter protein C (AAC75259.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein 2352082 ccmC 990282002282 ccmC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 heme exporter protein YP_005252803.1 2351345 R 990282 CDS YP_005252804.1 378989640 complement(2352134..2352793) 1 NC_016863.1 similar to Escherichia coli heme exporter protein B cytochrome c-type biogenesis protein (AAC75260.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein 2352793 ccmB 990282002283 ccmB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 heme exporter protein YP_005252804.1 2352134 R 990282 CDS YP_005252805.1 378989641 complement(2352790..2353407) 1 NC_016863.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 2353407 ccmA 990282002284 ccmA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome c biogenesis protein CcmA YP_005252805.1 2352790 R 990282 CDS YP_005252806.1 378989642 complement(2353428..2354030) 1 NC_016863.1 with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC 2354030 napC 990282002285 napC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome c-type protein NapC YP_005252806.1 2353428 R 990282 CDS YP_005252807.1 378989643 complement(2354040..2354489) 1 NC_016863.1 small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; citrate reductase cytochrome c-type subunit 2354489 napB 990282002286 napB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 citrate reductase cytochrome c-type subunit YP_005252807.1 2354040 R 990282 CDS YP_005252808.1 378989644 complement(2354605..2355474) 1 NC_016863.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 2355474 napH 990282002287 napH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 quinol dehydrogenase membrane component YP_005252808.1 2354605 R 990282 CDS YP_005252809.1 378989645 complement(2355461..2356156) 1 NC_016863.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 2356156 napG 990282002288 napG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 quinol dehydrogenase periplasmic component YP_005252809.1 2355461 R 990282 CDS YP_005252810.1 378989646 complement(2356163..2358649) 1 NC_016863.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 2358649 napA 990282002289 napA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrate reductase catalytic subunit YP_005252810.1 2356163 R 990282 CDS YP_005252811.1 378989647 complement(2358646..2358909) 1 NC_016863.1 assembly protein for periplasmic nitrate reductase 2358909 napD 990282002290 napD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 assembly protein for periplasmic nitrate reductase YP_005252811.1 2358646 R 990282 CDS YP_005252812.1 378989648 complement(2358899..2359390) 1 NC_016863.1 Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.; ferredoxin-type protein 2359390 napF 990282002291 napF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ferredoxin-type protein YP_005252812.1 2358899 R 990282 CDS YP_005252813.1 378989649 2359804..2360298 1 NC_016863.1 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2360298 eco 990282002292 eco Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ecotin YP_005252813.1 2359804 D 990282 CDS YP_005252814.1 378989650 complement(2360507..2362150) 1 NC_016863.1 efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane protein/ATP-binding component 2362150 yojI 990282002293 yojI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multidrug transporter membrane protein/ATP-binding component YP_005252814.1 2360507 R 990282 CDS YP_005252815.1 378989651 complement(2362226..2362876) 1 NC_016863.1 alkylated DNA repair protein ALKB (SW:ALKB_SALTY); specific for alkylated DNA; DNA repair system protein 2362876 alkB 990282002294 alkB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA repair system protein YP_005252815.1 2362226 R 990282 CDS YP_005252816.1 378989652 complement(2362879..2363940) 1 NC_016863.1 ADA regulatory protein; regulatory protein of adaptative response; (SW:ADA_SALTY); AraC/Xyl family; O6-methylguanine-DNA methyltransferase/transcription activator/repressor 2363940 ada 990282002295 ada Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 O6-methylguanine-DNA methyltransferase/transcription activator/repressor YP_005252816.1 2362879 R 990282 CDS YP_005252817.1 378989653 complement(2364021..2365073) 1 NC_016863.1 catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the; thiamine biosynthesis lipoprotein ApbE 2365073 apbE 990282002296 apbE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiamine biosynthesis lipoprotein ApbE YP_005252817.1 2364021 R 990282 CDS YP_005252818.1 378989654 complement(2365188..2366324) 1 NC_016863.1 allows for ions and hydrophilic solutes to cross the outer membrane; outer membrane porin protein C 2366324 ompC 990282002297 ompC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane porin protein C YP_005252818.1 2365188 R 990282 CDS YP_005252819.1 378989655 2367053..2369722 1 NC_016863.1 similar to Escherichia coli putative 2-component sensor protein (AAC75276.1); regulatory protein; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2369722 yojN 990282002298 yojN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphotransfer intermediate protein in two-component regulatory system with RcsBC YP_005252819.1 2367053 D 990282 CDS YP_005252820.1 378989656 2369739..2370389 1 NC_016863.1 two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 2370389 rcsB 990282002299 rcsB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator RcsB YP_005252820.1 2369739 D 990282 CDS YP_005252821.1 378989657 complement(2370492..2373338) 1 NC_016863.1 similar to Escherichia coli sensor for ctr capsule biosynthesis; probable histidine kinase acting on RcsB (AAC75278.1); in two-component regulatory system; regulates colanic capsule biosynthesis; hybrid sensory kinase in two-component regulatory system with RcsB and YojN 2373338 rcsC 990282002300 rcsC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hybrid sensory kinase in two-component regulatory system with RcsB and YojN YP_005252821.1 2370492 R 990282 CDS YP_005252822.1 378989658 complement(2373456..2376092) 1 NC_016863.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2376092 gyrA 990282002301 gyrA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA gyrase subunit A YP_005252822.1 2373456 R 990282 CDS YP_005252823.1 378989659 complement(2376502..2377704) 1 NC_016863.1 similar to Escherichia coli starvation-sensing protein (AAC74653.1); putative dehydratase 2377704 990282002302 STMUK_2303 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dehydratase YP_005252823.1 2376502 R 990282 CDS YP_005252824.1 378989660 complement(2377719..2379044) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75306.1); putative permease 2379044 990282002303 STMUK_2304 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005252824.1 2377719 R 990282 CDS YP_005252825.1 378989661 2379094..2379978 1 NC_016863.1 GntR family; putative regulatory protein 2379978 990282002304 STMUK_2305 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005252825.1 2379094 D 990282 CDS YP_005252826.1 378989662 2380061..2380789 1 NC_016863.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2380789 ubiG 990282002305 ubiG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-demethylubiquinone-9 3-methyltransferase YP_005252826.1 2380061 D 990282 CDS YP_005252827.1 378989663 2381145..2383430 1 NC_016863.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2383430 nrdA 990282002306 nrdA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonucleotide-diphosphate reductase subunit alpha YP_005252827.1 2381145 D 990282 CDS YP_005252828.1 378989664 2383543..2384673 1 NC_016863.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2384673 nrdB 990282002307 nrdB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonucleotide-diphosphate reductase subunit beta YP_005252828.1 2383543 D 990282 CDS YP_005252829.1 378989665 2384673..2384927 1 NC_016863.1 plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; 2Fe-2S ferredoxin 2384927 yfaE 990282002308 yfaE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2Fe-2S ferredoxin YP_005252829.1 2384673 D 990282 CDS YP_005252830.1 378989666 complement(2384929..2386119) 1 NC_016863.1 similar to Escherichia coli putative transport (AAC76498.1); putative permease 2386119 990282002309 STMUK_2310 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005252830.1 2384929 R 990282 CDS YP_005252831.1 378989667 2386281..2387159 1 NC_016863.1 LysR family; putative transcriptional regulator 2387159 990282002310 STMUK_2311 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252831.1 2386281 D 990282 CDS YP_005252832.1 378989668 complement(2387275..2388345) 1 NC_016863.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 2388345 glpQ 990282002311 glpQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycerophosphodiester phosphodiesterase YP_005252832.1 2387275 R 990282 CDS YP_005252833.1 378989669 complement(2388350..2389708) 1 NC_016863.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter 2389708 glpT 990282002312 glpT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sn-glycerol-3-phosphate transporter YP_005252833.1 2388350 R 990282 CDS YP_005252834.1 378989670 2389981..2391609 1 NC_016863.1 anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A 2391609 glpA 990282002313 glpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sn-glycerol-3-phosphate dehydrogenase subunit A YP_005252834.1 2389981 D 990282 CDS YP_005252835.1 378989671 2391599..2392858 1 NC_016863.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2392858 glpB 990282002314 glpB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_005252835.1 2391599 D 990282 CDS YP_005252836.1 378989672 2392855..2394045 1 NC_016863.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 2394045 glpC 990282002315 glpC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sn-glycerol-3-phosphate dehydrogenase subunit C YP_005252836.1 2392855 D 990282 CDS YP_005252837.1 378989673 2394540..2395493 1 NC_016863.1 similar to ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity is; deubiquitinase 2395493 sseL 990282002316 sseL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 deubiquitinase YP_005252837.1 2394540 D 990282 CDS YP_005252838.1 378989674 complement(2395603..2395779) 1 NC_016863.1 putative cytoplasmic protein 2395779 990282002317 STMUK_2318 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252838.1 2395603 R 990282 CDS YP_005252839.1 378989675 complement(2395785..2396588) 1 NC_016863.1 putative aldolase 2396588 990282002318 STMUK_2319 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative aldolase YP_005252839.1 2395785 R 990282 CDS YP_005252840.1 378989676 complement(2396614..2397903) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75306.1); MFS family; putative transport protein 2397903 yfaV 990282002319 yfaV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005252840.1 2396614 R 990282 CDS YP_005252841.1 378989677 complement(2397959..2399176) 1 NC_016863.1 similar to Escherichia coli putative racemase (AAC75307.1); putative galactonate dehydratase 2399176 yfaW 990282002320 yfaW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative galactonate dehydratase YP_005252841.1 2397959 R 990282 CDS YP_005252842.1 378989678 complement(2399178..2399960) 1 NC_016863.1 similar to Escherichia coli putative regulator (AAC75308.1); putative transcriptional regulator 2399960 yfaX 990282002321 yfaX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252842.1 2399178 R 990282 CDS YP_005252843.1 378989679 complement(2400210..2401406) 1 NC_016863.1 similar to molybdopterin-biosynthesis; competence damage-inducible protein A 2401406 990282002322 STMUK_2323 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 competence damage-inducible protein A YP_005252843.1 2400210 R 990282 CDS YP_005252844.1 378989680 complement(2401521..2402168) 1 NC_016863.1 putative inner membrane protein 2402168 yfaZ 990282002323 yfaZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252844.1 2401521 R 990282 CDS YP_005252845.1 378989681 2402342..2402767 1 NC_016863.1 similar to oxidative damage repair enzymes; putative NTP pyrophosphohydrolase 2402767 yfaO 990282002324 yfaO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative NTP pyrophosphohydrolase YP_005252845.1 2402342 D 990282 CDS YP_005252846.1 378989682 complement(2402812..2403417) 1 NC_016863.1 similar to Escherichia coli protein induced by aluminum (AAC75312.1); aluminum-inducible protein 2403417 ais 990282002325 ais Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aluminum-inducible protein YP_005252846.1 2402812 R 990282 CDS YP_005252847.1 378989683 2403698..2404855 1 NC_016863.1 catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2404855 yfbE 990282002326 yfbE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase YP_005252847.1 2403698 D 990282 CDS YP_005252848.1 378989684 2404858..2405841 1 NC_016863.1 catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 2405841 pmrF 990282002327 pmrF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase YP_005252848.1 2404858 D 990282 CDS YP_005252849.1 378989685 2405838..2407820 1 NC_016863.1 Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutan; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2407820 yfbG 990282002328 yfbG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase YP_005252849.1 2405838 D 990282 CDS YP_005252850.1 378989686 2407817..2408716 1 NC_016863.1 putative cytoplasmic protein 2408716 990282002329 STMUK_2330 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252850.1 2407817 D 990282 CDS YP_005252851.1 378989687 2408713..2410359 1 NC_016863.1 catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 2410359 arnT 990282002330 arnT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-amino-4-deoxy-L-arabinose transferase YP_005252851.1 2408713 D 990282 CDS YP_005252852.1 378989688 2410356..2410691 1 NC_016863.1 putative inner membrane protein 2410691 990282002331 STMUK_2332 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252852.1 2410356 D 990282 CDS YP_005252853.1 378989689 2410691..2411068 1 NC_016863.1 similar to Escherichia coli putative transport/receptor protein (AAC75318.1); hypothetical protein 2411068 990282002332 STMUK_2333 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252853.1 2410691 D 990282 CDS YP_005252854.1 378989690 complement(2411063..2411320) 1 NC_016863.1 polymyxin b resistance protein PmrD (SW:PMRD_SALTY); polymyxin resistance protein B 2411320 pmrD 990282002333 pmrD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 polymyxin resistance protein B YP_005252854.1 2411063 R 990282 CDS YP_005252855.1 378989691 complement(2411418..2412785) 1 NC_016863.1 O-succinylbenzoic acid-CoA ligase (SW:MENE_SALTY); O-succinylbenzoic acid--CoA ligase 2412785 menE 990282002334 menE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 O-succinylbenzoic acid--CoA ligase YP_005252855.1 2411418 R 990282 CDS YP_005252856.1 378989692 complement(2412782..2413744) 1 NC_016863.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 2413744 menC 990282002335 menC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 O-succinylbenzoate synthase YP_005252856.1 2412782 R 990282 CDS YP_005252857.1 378989693 complement(2413744..2414601) 1 NC_016863.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 2414601 menB 990282002336 menB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 naphthoate synthase YP_005252857.1 2413744 R 990282 CDS YP_005252858.1 378989694 complement(2414616..2415374) 1 NC_016863.1 catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase YfbB 2415374 yfbB 990282002337 yfbB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acyl-CoA thioester hydrolase YfbB YP_005252858.1 2414616 R 990282 CDS YP_005252859.1 378989695 complement(2415371..2417041) 1 NC_016863.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 2417041 menD 990282002338 menD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_005252859.1 2415371 R 990282 CDS YP_005252860.1 378989696 complement(2417127..2418422) 1 NC_016863.1 synthesizes isochorismate acid from chorismate; menaquinone-specific isochorismate synthase 2418422 menF 990282002339 menF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 menaquinone-specific isochorismate synthase YP_005252860.1 2417127 R 990282 CDS YP_005252861.1 378989697 complement(2418523..2418834) 1 NC_016863.1 hypothetical protein 2418834 elaB 990282002340 elaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252861.1 2418523 R 990282 CDS YP_005252862.1 378989698 complement(2418883..2419344) 1 NC_016863.1 hypothetical protein 2419344 elaA 990282002341 elaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252862.1 2418883 R 990282 CDS YP_005252863.1 378989699 2419405..2420322 1 NC_016863.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; assoc; ribonuclease Z 2420322 elaC 990282002342 elaC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonuclease Z YP_005252863.1 2419405 D 990282 CDS YP_005252864.1 378989700 2420388..2421389 1 NC_016863.1 similar to Escherichia coli positive regulator of CheA protein activity (AAC74957.1); putative chemotaxis signal transduction protein 2421389 990282002343 STMUK_2344 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative chemotaxis signal transduction protein YP_005252864.1 2420388 D 990282 CDS YP_005252865.1 378989701 complement(2421430..2423211) 1 NC_016863.1 putative von Willebrand factor; contains vWF type A domain; hypothetical protein 2423211 yfbK 990282002344 yfbK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252865.1 2421430 R 990282 CDS YP_005252866.1 378989702 complement(2424099..2425376) 1 NC_016863.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 2425376 nuoN 990282002345 nuoN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NADH dehydrogenase subunit N YP_005252866.1 2424099 R 990282 CDS YP_005252867.1 378989703 complement(2425563..2427092) 1 NC_016863.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 2427092 nuoM 990282002346 nuoM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NADH dehydrogenase subunit M YP_005252867.1 2425563 R 990282 CDS YP_005252868.1 378989704 complement(2427406..2429247) 1 NC_016863.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 2429247 nuoL 990282002347 nuoL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NADH dehydrogenase subunit L YP_005252868.1 2427406 R 990282 CDS YP_005252869.1 378989705 complement(2429244..2429546) 1 NC_016863.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 2429546 nuoK 990282002348 nuoK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NADH dehydrogenase subunit K YP_005252869.1 2429244 R 990282 CDS YP_005252870.1 378989706 complement(2429543..2430097) 1 NC_016863.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 2430097 nuoJ 990282002349 nuoJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NADH dehydrogenase subunit J YP_005252870.1 2429543 R 990282 CDS YP_005252871.1 378989707 complement(2430108..2430650) 1 NC_016863.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 2430650 nuoI 990282002350 nuoI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NADH dehydrogenase subunit I YP_005252871.1 2430108 R 990282 CDS YP_005252872.1 378989708 complement(2430665..2431642) 1 NC_016863.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 2431642 nuoH 990282002351 nuoH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NADH dehydrogenase subunit H YP_005252872.1 2430665 R 990282 CDS YP_005252873.1 378989709 complement(2431639..2434371) 1 NC_016863.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 2434371 nuoG 990282002352 nuoG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NADH dehydrogenase subunit G YP_005252873.1 2431639 R 990282 CDS YP_005252874.1 378989710 complement(2434396..2435733) 1 NC_016863.1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 2435733 nuoF 990282002353 nuoF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NADH dehydrogenase I subunit F YP_005252874.1 2434396 R 990282 CDS YP_005252875.1 378989711 complement(2435730..2436230) 1 NC_016863.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 2436230 nuoE 990282002354 nuoE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NADH dehydrogenase subunit E YP_005252875.1 2435730 R 990282 CDS YP_005252876.1 378989712 complement(2436233..2438035) 1 NC_016863.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 2438035 nuoC 990282002355 nuoC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional NADH:ubiquinone oxidoreductase subunit C/D YP_005252876.1 2436233 R 990282 CDS YP_005252877.1 378989713 complement(2438122..2438784) 1 NC_016863.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 2438784 nuoB 990282002356 nuoB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NADH dehydrogenase subunit B YP_005252877.1 2438122 R 990282 CDS YP_005252878.1 378989714 complement(2438800..2439243) 1 NC_016863.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 2439243 nuoA 990282002357 nuoA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NADH dehydrogenase subunit A YP_005252878.1 2438800 R 990282 CDS YP_005252879.1 378989715 complement(2439638..2439790) 1 NC_016863.1 putative cytoplasmic protein 2439790 990282002358 STMUK_2359 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252879.1 2439638 R 990282 CDS YP_005252880.1 378989716 complement(2439870..2440808) 1 NC_016863.1 similar to Escherichia coli NADH dehydrogenase transcriptional regulator; LysR family (AAC75349.1); NADH dehydrogenase transcriptional repressor 2440808 lrhA 990282002359 lrhA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NADH dehydrogenase transcriptional repressor YP_005252880.1 2439870 R 990282 CDS YP_005252881.1 378989717 2441740..2442954 1 NC_016863.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2442954 yfbQ 990282002360 yfbQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aminotransferase AlaT YP_005252881.1 2441740 D 990282 CDS YP_005252882.1 378989718 2443048..2443647 1 NC_016863.1 similar to Escherichia coli putative alpha helix protein (AAC75351.1); HD superfamily; hypothetical protein 2443647 990282002361 STMUK_2362 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252882.1 2443048 D 990282 CDS YP_005252883.1 378989719 complement(2443739..2445565) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75352.1); putative response regulator 2445565 yfbS 990282002362 yfbS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative response regulator YP_005252883.1 2443739 R 990282 CDS YP_005252884.1 378989720 complement(2445642..2446319) 1 NC_016863.1 similar to Escherichia coli putative phosphatase (AAC75353.1); putative phosphatase 2446319 yfbT 990282002363 yfbT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphatase YP_005252884.1 2445642 R 990282 CDS YP_005252885.1 378989721 complement(2446312..2446806) 1 NC_016863.1 hypothetical protein 2446806 yfbU 990282002364 yfbU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252885.1 2446312 R 990282 CDS YP_005252886.1 378989722 complement(2446889..2447344) 1 NC_016863.1 hypothetical protein 2447344 990282002365 STMUK_2366 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252886.1 2446889 R 990282 CDS YP_005252887.1 378989723 2447684..2448886 1 NC_016863.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2448886 ackA 990282002366 ackA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetate kinase YP_005252887.1 2447684 D 990282 CDS YP_005252888.1 378989724 2448963..2451107 1 NC_016863.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2451107 pta 990282002367 pta Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphate acetyltransferase YP_005252888.1 2448963 D 990282 CDS YP_005252889.1 378989725 2451325..2452845 1 NC_016863.1 similar to Escherichia coli putative S-transferase (AAC75358.1); hypothetical protein 2452845 yfcC 990282002368 yfcC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252889.1 2451325 D 990282 CDS YP_005252890.1 378989726 complement(2452894..2453847) 1 NC_016863.1 similar to Escherichia coli 1-deoxyxylulose-5-phosphate synthase; flavoprotein (AAC73523.1); putative transketolase 2453847 990282002369 STMUK_2370 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transketolase YP_005252890.1 2452894 R 990282 CDS YP_005252891.1 378989727 complement(2453840..2454670) 1 NC_016863.1 similar to Escherichia coli transketolase 1 isozyme (AAC75972.1); putative transketolase 2454670 990282002370 STMUK_2371 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transketolase YP_005252891.1 2453840 R 990282 CDS YP_005252892.1 378989728 complement(2454667..2456058) 1 NC_016863.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 2456058 sgaT 990282002371 sgaT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system ascorbate-specific transporter subunit IIC YP_005252892.1 2454667 R 990282 CDS YP_005252893.1 378989729 complement(2456079..2456351) 1 NC_016863.1 putative cytoplasmic protein 2456351 990282002372 STMUK_2373 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252893.1 2456079 R 990282 CDS YP_005252894.1 378989730 complement(2456432..2456875) 1 NC_016863.1 similar to Escherichia coli putative PTS system enzyme II A component (AAC77152.1); putative phosphotransferase system enzyme II A component 2456875 990282002373 STMUK_2374 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphotransferase system enzyme II A component YP_005252894.1 2456432 R 990282 CDS YP_005252895.1 378989731 2457128..2458147 1 NC_016863.1 similar to Escherichia coli regulator of gluconate (gnt) operon (AAC76463.1); putative transcriptional regulator 2458147 990282002374 STMUK_2375 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252895.1 2457128 D 990282 CDS YP_005252896.1 378989732 complement(2458153..2458707) 1 NC_016863.1 similar to Escherichia coli putative regulator (AAC75359.1); putative NTP pyrophosphohydrolase 2458707 990282002375 STMUK_2376 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative NTP pyrophosphohydrolase YP_005252896.1 2458153 R 990282 CDS YP_005252897.1 378989733 complement(2458764..2459315) 1 NC_016863.1 phosphodiesterase 2459315 yfcE 990282002376 yfcE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphodiesterase YP_005252897.1 2458764 R 990282 CDS YP_005252898.1 378989734 complement(2459371..2460015) 1 NC_016863.1 putative glutathione S-transferase 2460015 yfcF 990282002377 yfcF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glutathione S-transferase YP_005252898.1 2459371 R 990282 CDS YP_005252899.1 378989735 2460158..2460805 1 NC_016863.1 similar to Escherichia coli putative S-transferase (AAC75362.1); putative glutathione S-transferase 2460805 yfcG 990282002378 yfcG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glutathione S-transferase YP_005252899.1 2460158 D 990282 CDS YP_005252900.1 378989736 2460931..2461824 1 NC_016863.1 similar to Escherichia coli putative sugar nucleotide epimerase (AAC75364.1); putative sugar nucleotide epimerase 2461824 yfcH 990282002379 yfcH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar nucleotide epimerase YP_005252900.1 2460931 D 990282 CDS YP_005252901.1 378989737 complement(2461876..2462652) 1 NC_016863.1 histidine transport ATP-binding protein HisP (SW:HISP_SALTY); ABC superfamily ATP-binding protein; histidine/lysine/arginine/ornithine transporter subunit 2462652 hisP 990282002380 hisP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 histidine/lysine/arginine/ornithine transporter subunit YP_005252901.1 2461876 R 990282 CDS YP_005252902.1 378989738 complement(2462663..2463370) 1 NC_016863.1 histidine transport system permease protein HisM (SW:HISM_SALTY); ABC superfamily membrane protein; histidine/lysine/arginine/ornithine transport protein 2463370 hisM 990282002381 hisM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 histidine/lysine/arginine/ornithine transport protein YP_005252902.1 2462663 R 990282 CDS YP_005252903.1 378989739 complement(2463367..2464053) 1 NC_016863.1 histidine transport system permease protein HisQ (SW:HISQ_SALTY); ABC superfamily membrane protein; histidine/lysine/arginine/ornithine transport protein 2464053 hisQ 990282002382 hisQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 histidine/lysine/arginine/ornithine transport protein YP_005252903.1 2463367 R 990282 CDS YP_005252904.1 378989740 complement(2464236..2465018) 1 NC_016863.1 histidine-binding periplasmic protein precursor; HBP (SW:HISJ_SALTY); ABC superfamily binding protein; histidine transport protein 2465018 hisJ 990282002383 hisJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 histidine transport protein YP_005252904.1 2464236 R 990282 CDS YP_005252905.1 378989741 complement(2465256..2466038) 1 NC_016863.1 lysine-arginine-ornithine-binding periplasmic protein precursor; LAO-binding protein (SW:ARGT_SALTY); ABC superfamily binding protein; lysine/arginine/ornithine transport protein 2466038 argT 990282002384 argT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lysine/arginine/ornithine transport protein YP_005252905.1 2465256 R 990282 CDS YP_005252906.1 378989742 complement(2466327..2466896) 1 NC_016863.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2466896 ubiX 990282002385 ubiX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_005252906.1 2466327 R 990282 CDS YP_005252907.1 378989743 complement(2466923..2468329) 1 NC_016863.1 similar to Escherichia coli putative amino acid/amine transport protein (AAC73363.1); putative amino acid transporter 2468329 990282002386 STMUK_2387 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative amino acid transporter YP_005252907.1 2466923 R 990282 CDS YP_005252908.1 378989744 complement(2468393..2469496) 1 NC_016863.1 putative cytoplasmic protein 2469496 990282002387 STMUK_2388 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252908.1 2468393 R 990282 CDS YP_005252909.1 378989745 complement(2469498..2470919) 1 NC_016863.1 similar to Escherichia coli acid sensitivity protein, putative transporter (AAC74565.1); putative amino acid transporter 2470919 990282002388 STMUK_2389 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative amino acid transporter YP_005252909.1 2469498 R 990282 CDS YP_005252910.1 378989746 complement(2471010..2472407) 1 NC_016863.1 similar to Escherichia coli diaminopimelate decarboxylase (AAC75877.1); putative diaminopimelate decarboxylase 2472407 990282002389 STMUK_2390 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative diaminopimelate decarboxylase YP_005252910.1 2471010 R 990282 CDS YP_005252911.1 378989747 2472618..2474045 1 NC_016863.1 similar to Escherichia coli response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS) (AAC75280.1); putative regulatory protein 2474045 990282002390 STMUK_2391 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005252911.1 2472618 D 990282 CDS YP_005252912.1 378989748 complement(2474081..2475598) 1 NC_016863.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2475598 purF 990282002391 purF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 amidophosphoribosyltransferase YP_005252912.1 2474081 R 990282 CDS YP_005252913.1 378989749 complement(2475636..2476124) 1 NC_016863.1 membrane protein required for colicin V production; colicin V noteion protein 2476124 cvpA 990282002392 cvpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 colicin V noteion protein YP_005252913.1 2475636 R 990282 CDS YP_005252914.1 378989750 complement(2476435..2477109) 1 NC_016863.1 similar to Escherichia coli putative lipoprotein (AAC75374.1); hypothetical protein 2477109 dedD 990282002393 dedD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252914.1 2476435 R 990282 CDS YP_005252915.1 378989751 complement(2477099..2478367) 1 NC_016863.1 similar to Escherichia coli dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase (AAC75375.1); formylTHF polyglutamate synthase activity; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 2478367 folC 990282002394 folC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase YP_005252915.1 2477099 R 990282 CDS YP_005252916.1 378989752 complement(2478435..2479349) 1 NC_016863.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 2479349 accD 990282002395 accD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetyl-CoA carboxylase subunit beta YP_005252916.1 2478435 R 990282 CDS YP_005252917.1 378989753 complement(2479499..2480158) 1 NC_016863.1 putative DedA family; hypothetical protein 2480158 dedA 990282002396 dedA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252917.1 2479499 R 990282 CDS YP_005252918.1 378989754 complement(2480207..2481019) 1 NC_016863.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2481019 hisT 990282002397 hisT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA pseudouridine synthase A YP_005252918.1 2480207 R 990282 CDS YP_005252919.1 378989755 complement(2481019..2482032) 1 NC_016863.1 similar to Escherichia coli putative PTS system enzyme II A component (AAC75379.1); putative semialdehyde dehydrogenase 2482032 usg 990282002398 usg Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative semialdehyde dehydrogenase YP_005252919.1 2481019 R 990282 CDS YP_005252920.1 378989756 complement(2482100..2483236) 1 NC_016863.1 catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase 2483236 pdxB 990282002399 pdxB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 erythronate-4-phosphate dehydrogenase YP_005252920.1 2482100 R 990282 CDS YP_005252921.1 378989757 2483340..2484341 1 NC_016863.1 in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 2484341 flk 990282002400 flk Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagella biosynthesis regulator YP_005252921.1 2483340 D 990282 CDS YP_005252922.1 378989758 complement(2484338..2485516) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75382.1); hypothetical protein 2485516 990282002401 STMUK_2402 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252922.1 2484338 R 990282 CDS YP_005252923.1 378989759 complement(2485696..2486070) 1 NC_016863.1 putative cytoplasmic protein 2486070 990282002402 STMUK_2403 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252923.1 2485696 R 990282 CDS YP_005252924.1 378989760 2486243..2486491 1 NC_016863.1 similar to Escherichia coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); helix-turn-helix; putative regulatory protein 2486491 990282002403 STMUK_2404 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005252924.1 2486243 D 990282 CDS YP_005252925.1 378989761 2486660..2487028 1 NC_016863.1 putative cytoplasmic protein 2487028 990282002404 STMUK_2405 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252925.1 2486660 D 990282 CDS YP_005252926.1 378989762 2487028..2487546 1 NC_016863.1 hypothetical protein 2487546 990282002405 STMUK_2406 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252926.1 2487028 D 990282 CDS YP_005252927.1 378989763 complement(2487613..2488269) 1 NC_016863.1 putative inner membrane protein 2488269 990282002406 STMUK_2407 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252927.1 2487613 R 990282 CDS YP_005252928.1 378989764 complement(2488367..2489581) 1 NC_016863.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 2489581 fabB 990282002407 fabB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-oxoacyl-ACP synthase YP_005252928.1 2488367 R 990282 CDS YP_005252929.1 378989765 2489681..2491741 1 NC_016863.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 2491741 mnmC 990282002408 mnmC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 5-methylaminomethyl-2-thiouridine methyltransferase YP_005252929.1 2489681 D 990282 CDS YP_005252930.1 378989766 complement(2491793..2492068) 1 NC_016863.1 putative cytoplasmic protein 2492068 yfcL 990282002409 yfcL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252930.1 2491793 R 990282 CDS YP_005252931.1 378989767 complement(2492101..2492649) 1 NC_016863.1 similar to Escherichia coli putative transporting ATPase (AAC75386.1); putative cytoplasmic protein 2492649 yfcM 990282002410 yfcM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252931.1 2492101 R 990282 CDS YP_005252932.1 378989768 complement(2492649..2493458) 1 NC_016863.1 similar to Escherichia coli putative structural protein (AAC75387.1); hypothetical protein 2493458 yfcA 990282002411 yfcA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252932.1 2492649 R 990282 CDS YP_005252933.1 378989769 complement(2493458..2494282) 1 NC_016863.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 2494282 mepA 990282002412 mepA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 penicillin-insensitive murein endopeptidase YP_005252933.1 2493458 R 990282 CDS YP_005252934.1 378989770 complement(2494286..2495371) 1 NC_016863.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2495371 aroC 990282002413 aroC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chorismate synthase YP_005252934.1 2494286 R 990282 CDS YP_005252935.1 378989771 complement(2495407..2496339) 1 NC_016863.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2496339 yfcB 990282002414 yfcB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_005252935.1 2495407 R 990282 CDS YP_005252936.1 378989772 2496505..2497056 1 NC_016863.1 contains putative Smr domain; hypothetical protein 2497056 yfcN 990282002415 yfcN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252936.1 2496505 D 990282 CDS YP_005252937.1 378989773 complement(2497156..2497641) 1 NC_016863.1 phosphohistidine phosphatase 2497641 sixA 990282002416 sixA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphohistidine phosphatase YP_005252937.1 2497156 R 990282 CDS YP_005252938.1 378989774 complement(2497850..2499997) 1 NC_016863.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase a; multifunctional fatty acid oxidation complex subunit alpha 2499997 fadJ 990282002417 fadJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multifunctional fatty acid oxidation complex subunit alpha YP_005252938.1 2497850 R 990282 CDS YP_005252939.1 378989775 complement(2499997..2501307) 1 NC_016863.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 2501307 fadI 990282002418 fadI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-ketoacyl-CoA thiolase YP_005252939.1 2499997 R 990282 CDS YP_005252940.1 378989776 complement(2501485..2501769) 1 NC_016863.1 putative cytoplasmic protein 2501769 yfcZ 990282002419 yfcZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252940.1 2501485 R 990282 CDS YP_005252941.1 378989777 2502134..2503447 1 NC_016863.1 similar to Escherichia coli transport of long-chain fatty acids; sensitivity to phage T2 (AAC75404.1); long-chain fatty acid outer membrane transporter 2503447 fadL 990282002420 fadL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 long-chain fatty acid outer membrane transporter YP_005252941.1 2502134 D 990282 CDS YP_005252942.1 378989778 complement(2503508..2504263) 1 NC_016863.1 similar to Escherichia coli lipoprotein precursor (AAC75406.1); lipoprotein 2504263 vacJ 990282002421 vacJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipoprotein YP_005252942.1 2503508 R 990282 CDS YP_005252943.1 378989779 2504552..2505493 1 NC_016863.1 similar to Escherichia coli putative transport (AAC75407.1); hypothetical protein 2505493 yfdC 990282002422 yfdC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252943.1 2504552 D 990282 CDS YP_005252944.1 378989780 complement(2505800..2506738) 1 NC_016863.1 outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves; outer membrane protease 2506738 pgtE 990282002424 pgtE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane protease YP_005252944.1 2505800 R 990282 CDS YP_005252945.1 378989781 complement(2507006..2508253) 1 NC_016863.1 phosphoglycerate transport system transcriptional regulatory protein PgtA (SW:PGTA_SALTY); phosphoglycerate transport; activator 2508253 pgtA 990282002425 pgtA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 activator YP_005252945.1 2507006 R 990282 CDS YP_005252946.1 378989782 complement(2508243..2510249) 1 NC_016863.1 protein for signal transmission; PgtB (SW:PGTB_SALTY); phosphoglycerate transport; phosphoglycerate transport system sensor protein 2510249 pgtB 990282002426 pgtB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoglycerate transport system sensor protein YP_005252946.1 2508243 R 990282 CDS YP_005252947.1 378989783 complement(2510246..2511439) 1 NC_016863.1 protein for signal transmission; PgtC precursor (SW:PGTC_SALTY); phosphoglycerate transport; phosphoglycerate transport regulatory protein precursor 2511439 pgtC 990282002427 pgtC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoglycerate transport regulatory protein precursor YP_005252947.1 2510246 R 990282 CDS YP_005252948.1 378989784 2511875..2513266 1 NC_016863.1 phosphoglycerate transporter protein (SW:PGTP_SALTY); phosphoglycerate transport; transporter 2513266 pgtP 990282002428 pgtP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transporter YP_005252948.1 2511875 D 990282 CDS YP_005252949.1 378989785 complement(2513542..2513784) 1 NC_016863.1 putative inner membrane protein 2513784 990282002429 STMUK_2430 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252949.1 2513542 R 990282 CDS YP_005252950.1 378989786 complement(2513945..2514058) 1 NC_016863.1 similar to hypothetical protein SPC_1257 (Pid: YP_002636862.1).; hypothetical protein 2514058 990282002430 STMUK_2431 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252950.1 2513945 R 990282 CDS YP_005252951.1 378989787 2514306..2515226 1 NC_016863.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; lipid A biosynthesis palmitoleoyl acyltransferase 2515226 ddg 990282002431 ddg Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipid A biosynthesis palmitoleoyl acyltransferase YP_005252951.1 2514306 D 990282 CDS YP_005252952.1 378989788 complement(2515750..2516988) 1 NC_016863.1 similar to Escherichia coli putative aminotransferase (AAC75438.1); aminotransferase 2516988 yfdZ 990282002432 yfdZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aminotransferase YP_005252952.1 2515750 R 990282 CDS YP_005252953.1 378989789 complement(2517709..2518674) 1 NC_016863.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 2518674 glk 990282002433 glk Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucokinase YP_005252953.1 2517709 R 990282 CDS YP_005252954.1 378989790 2518878..2520113 1 NC_016863.1 hypothetical protein 2520113 990282002434 STMUK_2435 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252954.1 2518878 D 990282 CDS YP_005252955.1 378989791 complement(2520133..2521785) 1 NC_016863.1 similar to Escherichia coli acetolactate synthase III; valine sensitive; large subunit (AAC73188.1); putative thiamine pyrophosphate enzymes; indolepyruvate decarboxylase 2521785 990282002435 STMUK_2436 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 indolepyruvate decarboxylase YP_005252955.1 2520133 R 990282 CDS YP_005252956.1 378989792 2521965..2522963 1 NC_016863.1 similar to Escherichia coli putative reductase (AAC76037.1); putative oxidoreductase 2522963 990282002436 STMUK_2437 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidoreductase YP_005252956.1 2521965 D 990282 CDS YP_005252957.1 378989793 2523077..2523403 1 NC_016863.1 hypothetical protein 2523403 ypeC 990282002437 ypeC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252957.1 2523077 D 990282 CDS YP_005252958.1 378989794 complement(2523464..2524705) 1 NC_016863.1 manganese transport protein MntH (SW:MNTH_SALTY); Nramp family; manganese transport protein MntH 2524705 mntH 990282002438 mntH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 manganese transport protein MntH YP_005252958.1 2523464 R 990282 CDS YP_005252959.1 378989795 2525048..2526250 1 NC_016863.1 similar to Escherichia coli permease of transport system for 3 nucleosides (AAC75452.1); NUP family; nucleoside transport 2526250 nupC 990282002439 nupC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nucleoside transport YP_005252959.1 2525048 D 990282 CDS YP_005252960.1 378989796 complement(2526303..2528492) 1 NC_016863.1 putative diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain 2; hypothetical protein 2528492 yfeA 990282002440 yfeA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252960.1 2526303 R 990282 CDS YP_005252961.1 378989797 2529098..2529460 1 NC_016863.1 putative negative regulator 2529460 yfeC 990282002443 yfeC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative negative regulator YP_005252961.1 2529098 D 990282 CDS YP_005252962.1 378989798 2529462..2529854 1 NC_016863.1 putative negative regulator 2529854 yfeD 990282002444 yfeD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative negative regulator YP_005252962.1 2529462 D 990282 CDS YP_005252963.1 378989799 complement(2529908..2531323) 1 NC_016863.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2531323 gltX 990282002445 gltX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamyl-tRNA synthetase YP_005252963.1 2529908 R 990282 CDS YP_005252964.1 378989800 complement(2532139..2533023) 1 NC_016863.1 similar to Escherichia coli regulator for xapA (AAC75458.1); LysR family; DNA-binding transcriptional activator XapR 2533023 xapR 990282002450 xapR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator XapR YP_005252964.1 2532139 R 990282 CDS YP_005252965.1 378989801 complement(2533075..2533233) 1 NC_016863.1 similar to hypothetical protein STM2420.1n (Pid: NP_945166.1).; hypothetical protein 2533233 990282002451 STMUK_2452 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252965.1 2533075 R 990282 CDS YP_005252966.1 378989802 complement(2533292..2534548) 1 NC_016863.1 similar to Escherichia coli xanthosine permease (AAC75459.1); MFS superfamily; xanthosine permease 2534548 xapB 990282002452 xapB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 xanthosine permease YP_005252966.1 2533292 R 990282 CDS YP_005252967.1 378989803 complement(2534603..2535436) 1 NC_016863.1 similar to E. coli xanthosine phosphorylase(AAC75460.1); Blastp hit to AAC75460.1 (277 aa); xanthosine phosphorylase 2535436 990282002453 STMUK_2454 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 xanthosine phosphorylase YP_005252967.1 2534603 R 990282 CDS YP_005252968.1 378989804 2535692..2536453 1 NC_016863.1 similar to Escherichia coli putative sugar hydrolase (AAC75461.1); hypothetical protein 2536453 yfeN 990282002454 yfeN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252968.1 2535692 D 990282 CDS YP_005252969.1 378989805 complement(2536515..2537441) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75462.1); LysR family; putative transcriptional regulator 2537441 yfeR 990282002455 yfeR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005252969.1 2536515 R 990282 CDS YP_005252970.1 378989806 2537531..2538529 1 NC_016863.1 similar to Escherichia coli putative cytochrome oxidase (AAC75463.1); putative Na+-dependent transporter 2538529 yfeH 990282002456 yfeH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative Na+-dependent transporter YP_005252970.1 2537531 D 990282 CDS YP_005252971.1 378989807 complement(2538526..2538753) 1 NC_016863.1 putative cytoplasmic protein 2538753 990282002457 STMUK_2458 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252971.1 2538526 R 990282 CDS YP_005252972.1 378989808 complement(2538746..2540761) 1 NC_016863.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; NAD-dependent DNA ligase LigA 2540761 ligA 990282002458 ligA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NAD-dependent DNA ligase LigA YP_005252972.1 2538746 R 990282 CDS YP_005252973.1 378989809 complement(2540833..2541819) 1 NC_016863.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA 2541819 zipA 990282002459 zipA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division protein ZipA YP_005252973.1 2540833 R 990282 CDS YP_005252974.1 378989810 2542051..2542812 1 NC_016863.1 putative role in sulfur assimilation; putative sulfate transport protein CysZ 2542812 cysZ 990282002460 cysZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sulfate transport protein CysZ YP_005252974.1 2542051 D 990282 CDS YP_005252975.1 378989811 2542976..2543947 1 NC_016863.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2543947 cysK 990282002461 cysK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cysteine synthase A YP_005252975.1 2542976 D 990282 CDS YP_005252976.1 378989812 2544331..2544588 1 NC_016863.1 phosphocarrier protein HPR; histidine-containing protein (SW:PTHP_ECOLI); PTS family, Hpr protein; PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr 2544588 ptsH 990282002462 ptsH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr YP_005252976.1 2544331 D 990282 CDS YP_005252977.1 378989813 2544637..2546364 1 NC_016863.1 Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport sy; phosphoenolpyruvate-protein phosphotransferase 2546364 ptsI 990282002463 ptsI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoenolpyruvate-protein phosphotransferase YP_005252977.1 2544637 D 990282 CDS YP_005252978.1 378989814 2546405..2546914 1 NC_016863.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2546914 crr 990282002464 crr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system glucose-specific transporter YP_005252978.1 2546405 D 990282 CDS YP_005252979.1 378989815 complement(2547063..2547302) 1 NC_016863.1 putative cytoplasmic protein 2547302 990282002465 STMUK_2466 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252979.1 2547063 R 990282 CDS YP_005252980.1 378989816 complement(2547299..2548165) 1 NC_016863.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase 2548165 pdxK 990282002466 pdxK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyridoxal kinase YP_005252980.1 2547299 R 990282 CDS YP_005252981.1 378989817 2548248..2549540 1 NC_016863.1 putative transcriptional regulator PtsJ (SW:PTSJ_SALTY); GntR family; putative regulatory protein 2549540 ptsJ 990282002467 ptsJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005252981.1 2548248 D 990282 CDS YP_005252982.1 378989818 2549555..2550274 1 NC_016863.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2550274 yfeJ 990282002468 yfeJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamine amidotransferase YP_005252982.1 2549555 D 990282 CDS YP_005252983.1 378989819 2550333..2550713 1 NC_016863.1 hypothetical 13.3 kDa protein in pdxK-cysM intergenic region (SW:YFEK_SALTY); hypothetical protein 2550713 yfeK 990282002469 yfeK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252983.1 2550333 D 990282 CDS YP_005252984.1 378989820 2550726..2551265 1 NC_016863.1 hypothetical 20.5 kDa protein in pdxK-cysM intergenic region (SW:YFEL_SALTY); penicillin-binding protein; putative membrane carboxypeptidase 2551265 yfeL 990282002470 yfeL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative membrane carboxypeptidase YP_005252984.1 2550726 D 990282 CDS YP_005252985.1 378989821 complement(2551396..2552307) 1 NC_016863.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 2552307 cysM 990282002471 cysM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cysteine synthase B YP_005252985.1 2551396 R 990282 CDS YP_005252986.1 378989822 complement(2552375..2553472) 1 NC_016863.1 sulfate transport atp-binding protein CYSA (SW:CYSA_SALTY); ABC superfamily ATP-binding protein; chromate resistance; sulfate/thiosulfate transporter subunit 2553472 cysA 990282002472 cysA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sulfate/thiosulfate transporter subunit YP_005252986.1 2552375 R 990282 CDS YP_005252987.1 378989823 complement(2553462..2554337) 1 NC_016863.1 Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit 2554337 cysW 990282002473 cysW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sulfate/thiosulfate transporter permease subunit YP_005252987.1 2553462 R 990282 CDS YP_005252988.1 378989824 complement(2554337..2555170) 1 NC_016863.1 similar to Escherichia coli sulfate, thiosulfate transport system permease T protein (AAC75477.1); ABC superfamily membrane protein; sulfate/thiosulfate transporter subunit 2555170 cysU 990282002474 cysU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sulfate/thiosulfate transporter subunit YP_005252988.1 2554337 R 990282 CDS YP_005252989.1 378989825 complement(2555170..2556186) 1 NC_016863.1 thiosulfate-binding protein precursor (SW:CYSP_SALTY); ABC superfamily binding protein; thiosulfate transporter subunit 2556186 cysP 990282002475 cysP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiosulfate transporter subunit YP_005252989.1 2555170 R 990282 CDS YP_005252990.1 378989826 complement(2556344..2557135) 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC75479.1); short chain dehydrogenase 2557135 ucpA 990282002476 ucpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 short chain dehydrogenase YP_005252990.1 2556344 R 990282 CDS YP_005252991.1 378989827 complement(2557373..2558272) 1 NC_016863.1 putative iron-dependent peroxidase 2558272 990282002477 STMUK_2478 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative iron-dependent peroxidase YP_005252991.1 2557373 R 990282 CDS YP_005252992.1 378989828 complement(2558367..2558942) 1 NC_016863.1 hypothetical protein 2558942 990282002478 STMUK_2479 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005252992.1 2558367 R 990282 CDS YP_005252993.1 378989829 complement(2559004..2559453) 1 NC_016863.1 putative inner membrane protein 2559453 yfeZ 990282002479 yfeZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252993.1 2559004 R 990282 CDS YP_005252994.1 378989830 complement(2559440..2559976) 1 NC_016863.1 putative acetyltransferase 2559976 990282002480 STMUK_2481 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acetyltransferase YP_005252994.1 2559440 R 990282 CDS YP_005252995.1 378989831 2560078..2560947 1 NC_016863.1 probable N-acetylmuramoyl-L-alanine amidase AMIA precursor (SW:AMIA_SALTY); N-acetylmuramoyl-l-alanine amidase I 2560947 amiA 990282002481 amiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-acetylmuramoyl-l-alanine amidase I YP_005252995.1 2560078 D 990282 CDS YP_005252996.1 378989832 2560950..2561849 1 NC_016863.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2561849 hemF 990282002482 hemF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 coproporphyrinogen III oxidase YP_005252996.1 2560950 D 990282 CDS YP_005252997.1 378989833 2561870..2562199 1 NC_016863.1 hypothetical protein in eutR-hemF intergenic region; ORF33 (SW:YPFK_SALTY); putative inner membrane protein 2562199 990282002483 STMUK_2484 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005252997.1 2561870 D 990282 CDS YP_005252998.1 378989834 2562328..2563605 1 NC_016863.1 hypothetical 30.0 kDa protein in eutR-hemF intergenic region (ORF79) (SW:YPFL_SALTY); putative cytoplasmic protein 2563605 990282002484 STMUK_2485 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005252998.1 2562328 D 990282 CDS YP_005252999.1 378989835 complement(2563805..2564857) 1 NC_016863.1 activates the transcription of the ethanolamine utilization operon; transcriptional regulator EutR 2564857 eutR 990282002485 eutR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator EutR YP_005252999.1 2563805 R 990282 CDS YP_005253000.1 378989836 complement(2564905..2565399) 1 NC_016863.1 ethanolamine utilization protein EutK precursor (SW:EUTK_SALTY); putative carboxysome structural protein 2565399 eutK 990282002486 eutK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative carboxysome structural protein YP_005253000.1 2564905 R 990282 CDS YP_005253001.1 378989837 complement(2565412..2566071) 1 NC_016863.1 ethanolamine utilization protein EutL (SW:EUTL_SALTY); putative carboxysome structural protein 2566071 eutL 990282002487 eutL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative carboxysome structural protein YP_005253001.1 2565412 R 990282 CDS YP_005253002.1 378989838 complement(2566081..2566977) 1 NC_016863.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 2566977 eutC 990282002488 eutC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ethanolamine ammonia-lyase small subunit YP_005253002.1 2566081 R 990282 CDS YP_005253003.1 378989839 complement(2566996..2568357) 1 NC_016863.1 ethanolamine ammonia-lyase heavy chain (SW:EUTB_SALTY); ethanolamine ammonia-lyase heavy chain 2568357 eutB 990282002489 eutB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ethanolamine ammonia-lyase heavy chain YP_005253003.1 2566996 R 990282 CDS YP_005253004.1 378989840 complement(2568369..2569772) 1 NC_016863.1 ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 2569772 eutA 990282002490 eutA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 reactivating factor for ethanolamine ammonia lyase YP_005253004.1 2568369 R 990282 CDS YP_005253005.1 378989841 complement(2569769..2570995) 1 NC_016863.1 ethanolamine utilization protein EutH (SW:EUTH_SALTY); putative transport protein 2570995 eutH 990282002491 eutH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005253005.1 2569769 R 990282 CDS YP_005253006.1 378989842 complement(2571115..2572302) 1 NC_016863.1 ethanolamine utilization protein EutG (SW:EUTG_SALTY); putative transport protein 2572302 eutG 990282002492 eutG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005253006.1 2571115 R 990282 CDS YP_005253007.1 378989843 complement(2572292..2573131) 1 NC_016863.1 EutJ (SW:EUTJ_SALTY); putative heatshock protein 70; ethanolamine utilization protein 2573131 eutJ 990282002493 eutJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ethanolamine utilization protein YP_005253007.1 2572292 R 990282 CDS YP_005253008.1 378989844 complement(2573142..2574545) 1 NC_016863.1 invovled in ethanolamine utilization protein EutE (SW:EUTE_SALTY); putative aldehyde oxidoreductase 2574545 eutE 990282002494 eutE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative aldehyde oxidoreductase YP_005253008.1 2573142 R 990282 CDS YP_005253009.1 378989845 complement(2574557..2574856) 1 NC_016863.1 involved in ethanolamine utilization protein EutN (SW:EUTN_SALTY); putative detox protein 2574856 eutN 990282002495 eutN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative detox protein YP_005253009.1 2574557 R 990282 CDS YP_005253010.1 378989846 complement(2574957..2575247) 1 NC_016863.1 involved in ethanolamine utilization protein EutM precursor (SW:EUTM_SALTY); putative detox protein 2575247 eutM 990282002496 eutM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative detox protein YP_005253010.1 2574957 R 990282 CDS YP_005253011.1 378989847 complement(2575288..2576304) 1 NC_016863.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 2576304 eutD 990282002497 eutD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphotransacetylase YP_005253011.1 2575288 R 990282 CDS YP_005253012.1 378989848 complement(2576301..2577104) 1 NC_016863.1 ethanolamine utilization cobalamin adenosyltransferase (SW:EUTT_SALTY); putative cobalamin adenosyltransferase 2577104 eutT 990282002498 eutT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cobalamin adenosyltransferase YP_005253012.1 2576301 R 990282 CDS YP_005253013.1 378989849 complement(2577101..2577790) 1 NC_016863.1 ethanolamine utilization protein EutQ (SW:EUTQ_SALTY); putative ethanolamine utilization protein 2577790 eutQ 990282002499 eutQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ethanolamine utilization protein YP_005253013.1 2577101 R 990282 CDS YP_005253014.1 378989850 complement(2577768..2578247) 1 NC_016863.1 ethanolamine utilization protein EutP (SW:EUTP_SALTY); putative ethanolamine utilization protein 2578247 eutP 990282002500 eutP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ethanolamine utilization protein YP_005253014.1 2577768 R 990282 CDS YP_005253015.1 378989851 complement(2578260..2578595) 1 NC_016863.1 ethanolamine utilization protein EutS (SW:EUTS_SALTY); putative carboxysome structural protein 2578595 eutS 990282002501 eutS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative carboxysome structural protein YP_005253015.1 2578260 R 990282 CDS YP_005253016.1 378989852 complement(2579076..2579534) 1 NC_016863.1 transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 2579534 tnpA_6 990282002502 tnpA_6 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transposase for IS200 YP_005253016.1 2579076 R 990282 CDS YP_005253017.1 378989853 complement(2579724..2582003) 1 NC_016863.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 2582003 maeB 990282002503 maeB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 malic enzyme YP_005253017.1 2579724 R 990282 CDS YP_005253018.1 378989854 2582275..2583225 1 NC_016863.1 Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase A 2583225 talA 990282002504 talA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transaldolase A YP_005253018.1 2582275 D 990282 CDS YP_005253019.1 378989855 2583245..2585245 1 NC_016863.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during expo; transketolase 2585245 tktB 990282002505 tktB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transketolase YP_005253019.1 2583245 D 990282 CDS YP_005253020.1 378989856 complement(2585308..2585538) 1 NC_016863.1 putative cytoplasmic protein 2585538 990282002506 STMUK_2507 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253020.1 2585308 R 990282 CDS YP_005253021.1 378989857 complement(2585666..2586709) 1 NC_016863.1 hypothetical protein 2586709 ypfG 990282002507 ypfG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253021.1 2585666 R 990282 CDS YP_005253022.1 378989858 complement(2586834..2587409) 1 NC_016863.1 putative pyrophosphohydrolase 2587409 yffH 990282002508 yffH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative pyrophosphohydrolase YP_005253022.1 2586834 R 990282 CDS YP_005253023.1 378989859 2587613..2588911 1 NC_016863.1 similar to Escherichia coli putative beta-lactamase (AAC75483.1); hypothetical protein 2588911 990282002509 STMUK_2510 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253023.1 2587613 D 990282 CDS YP_005253024.1 378989860 complement(2589360..2591321) 1 NC_016863.1 unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); putative oxidoreductase Fe-S binding subunit 2591321 aegA 990282002510 aegA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidoreductase Fe-S binding subunit YP_005253024.1 2589360 R 990282 CDS YP_005253025.1 378989861 2591507..2593207 1 NC_016863.1 similar to Escherichia coli sensor for nitrate reductase system; protein histidine kinase; acts on NarP and narL (AAC75522.1); in two-component regulatory system; nitrate/nitrite sensor protein NarQ 2593207 narQ 990282002511 narQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrate/nitrite sensor protein NarQ YP_005253025.1 2591507 D 990282 CDS YP_005253026.1 378989862 2593392..2596505 1 NC_016863.1 similar to Escherichia coli protein that results in sensitivity to acriflavine; integral membrane protein; possible efflux pump (AAC75523.1); RND family; aminoglycoside/multidrug efflux system 2596505 acrD 990282002512 acrD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aminoglycoside/multidrug efflux system YP_005253026.1 2593392 D 990282 CDS YP_005253027.1 378989863 2597079..2597435 1 NC_016863.1 hypothetical protein 2597435 yffB 990282002513 yffB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253027.1 2597079 D 990282 CDS YP_005253028.1 378989864 2597439..2598566 1 NC_016863.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is simi; succinyl-diaminopimelate desuccinylase 2598566 dapE 990282002514 dapE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 succinyl-diaminopimelate desuccinylase YP_005253028.1 2597439 D 990282 CDS YP_005253029.1 378989865 2598594..2598794 1 NC_016863.1 hypothetical protein 2598794 990282002515 STMUK_2516 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253029.1 2598594 D 990282 CDS YP_005253030.1 378989866 complement(2598821..2600839) 1 NC_016863.1 putative acetyltransferase 2600839 ypfI 990282002516 ypfI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acetyltransferase YP_005253030.1 2598821 R 990282 CDS YP_005253031.1 378989867 complement(2600855..2601718) 1 NC_016863.1 putative inner membrane protein 2601718 990282002517 STMUK_2518 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253031.1 2600855 R 990282 CDS YP_005253032.1 378989868 complement(2601849..2602562) 1 NC_016863.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 2602562 purC 990282002518 purC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_005253032.1 2601849 R 990282 CDS YP_005253033.1 378989869 complement(2602737..2603771) 1 NC_016863.1 similar to Escherichia coli lipoprotein-34 (AAC75530.1); lipoprotein 2603771 nlpB 990282002519 nlpB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipoprotein YP_005253033.1 2602737 R 990282 CDS YP_005253034.1 378989870 complement(2603788..2604666) 1 NC_016863.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2604666 dapA 990282002520 dapA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dihydrodipicolinate synthase YP_005253034.1 2603788 R 990282 CDS YP_005253035.1 378989871 2604746..2605384 1 NC_016863.1 negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 2605384 gcvR 990282002521 gcvR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycine cleavage system transcriptional repressor YP_005253035.1 2604746 D 990282 CDS YP_005253036.1 378989872 2605384..2605854 1 NC_016863.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2605854 bcp 990282002522 bcp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thioredoxin-dependent thiol peroxidase YP_005253036.1 2605384 D 990282 CDS YP_005253037.1 378989873 complement(2605901..2606254) 1 NC_016863.1 putative glycerate kinase 2606254 990282002523 STMUK_2524 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycerate kinase YP_005253037.1 2605901 R 990282 CDS YP_005253038.1 378989874 complement(2606441..2607508) 1 NC_016863.1 similar to Escherichia coli putative permease (AAC75546.1); PerM family; putative permease 2607508 perM 990282002524 perM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005253038.1 2606441 R 990282 CDS YP_005253039.1 378989875 2607716..2609179 1 NC_016863.1 putative inner membrane or exported protein; hypothetical protein 2609179 990282002525 STMUK_2526 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253039.1 2607716 D 990282 CDS YP_005253040.1 378989876 2609219..2609578 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC75548.1); putative arsenate reductase 2609578 yfgD 990282002526 yfgD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative arsenate reductase YP_005253040.1 2609219 D 990282 CDS YP_005253041.1 378989877 complement(2609605..2610330) 1 NC_016863.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 2610330 yfgE 990282002527 yfgE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA replication initiation factor YP_005253041.1 2609605 R 990282 CDS YP_005253042.1 378989878 complement(2610401..2611690) 1 NC_016863.1 similar to Escherichia coli uracil transport (AAC75550.1); NCS2 family; uracil transporter 2611690 uraA 990282002528 uraA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 uracil transporter YP_005253042.1 2610401 R 990282 CDS YP_005253043.1 378989879 complement(2611778..2612404) 1 NC_016863.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2612404 upp 990282002529 upp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 uracil phosphoribosyltransferase YP_005253043.1 2611778 R 990282 CDS YP_005253044.1 378989880 2612818..2613855 1 NC_016863.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2613855 purM 990282002530 purM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoribosylaminoimidazole synthetase YP_005253044.1 2612818 D 990282 CDS YP_005253045.1 378989881 2613855..2614493 1 NC_016863.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses format; phosphoribosylglycinamide formyltransferase 2614493 purN 990282002531 purN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoribosylglycinamide formyltransferase YP_005253045.1 2613855 D 990282 CDS YP_005253046.1 378989882 2614682..2616748 1 NC_016863.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2616748 ppk 990282002532 ppk Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 polyphosphate kinase YP_005253046.1 2614682 D 990282 CDS YP_005253047.1 378989883 2616753..2618294 1 NC_016863.1 similar to Escherichia coli exopolyphosphatase (AAC75555.1); exopolyphosphatase 2618294 ppx 990282002533 ppx Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exopolyphosphatase YP_005253047.1 2616753 D 990282 CDS YP_005253048.1 378989884 complement(2618330..2620543) 1 NC_016863.1 similar to Escherichia coli putative cytochrome C-type biogenesis protein (AAC75556.1); putative diguanylate cyclase 2620543 990282002534 STMUK_2535 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative diguanylate cyclase YP_005253048.1 2618330 R 990282 CDS YP_005253049.1 378989885 complement(2620640..2620777) 1 NC_016863.1 putative cytoplasmic protein 2620777 990282002535 STMUK_2536 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253049.1 2620640 R 990282 CDS YP_005253050.1 378989886 complement(2620848..2621108) 1 NC_016863.1 putative inner membrane protein 2621108 990282002536 STMUK_2537 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253050.1 2620848 R 990282 CDS YP_005253051.1 378989887 2620956..2621147 1 NC_016863.1 putative inner membrane protein 2621147 990282002537 STMUK_2538 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253051.1 2620956 D 990282 CDS YP_005253052.1 378989888 complement(2621226..2621462) 1 NC_016863.1 putative inner membrane protein 2621462 990282002538 STMUK_2539 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253052.1 2621226 R 990282 CDS YP_005253053.1 378989889 2621688..2622017 1 NC_016863.1 similar to STM2011 and STM2902; putative cytoplasmic protein 2622017 990282002539 STMUK_2540 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253053.1 2621688 D 990282 CDS YP_005253054.1 378989890 complement(2622037..2622393) 1 NC_016863.1 similar to Escherichia coli IS3 putative transposase (AAC75150.1); putative transposase 2622393 990282002540 STMUK_2541 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transposase YP_005253054.1 2622037 R 990282 CDS YP_005253055.1 378989891 complement(2622550..2624127) 1 NC_016863.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2624127 guaA 990282002541 guaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GMP synthase YP_005253055.1 2622550 R 990282 CDS YP_005253056.1 378989892 complement(2624197..2625663) 1 NC_016863.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 2625663 guaB 990282002542 guaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 inosine 5'-monophosphate dehydrogenase YP_005253056.1 2624197 R 990282 CDS YP_005253057.1 378989893 2625824..2627173 1 NC_016863.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2627173 xseA 990282002543 xseA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exodeoxyribonuclease VII large subunit YP_005253057.1 2625824 D 990282 CDS YP_005253058.1 378989894 complement(2627335..2633454) 1 NC_016863.1 ShdA (gi|5107805); similar to the C-terminal region of AIDA; IcsA; subspecies I-specific; Peyer's patch colonization and shedding factor; AIDA autotransporter-like protein 2633454 shdA 990282002544 shdA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 AIDA autotransporter-like protein YP_005253058.1 2627335 R 990282 CDS YP_005253059.1 378989895 complement(2641620..2647217) 1 NC_016863.1 RatA (gi|4583529); putative outer membrane protein 2647217 ratA 990282002546 ratA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005253059.1 2641620 R 990282 CDS YP_005253060.1 378989896 complement(2647337..2648296) 1 NC_016863.1 SinI (gi|4583530); putative outer membrane protein 2648296 sinI 990282002547 sinI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005253060.1 2647337 R 990282 CDS YP_005253061.1 378989897 complement(2648354..2650546) 1 NC_016863.1 SinH (gi|4583531); similar to Escherichia coli intimin and Yersinia pestis invasin proteins; intimin-like protein 2650546 sinH 990282002548 sinH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 intimin-like protein YP_005253061.1 2648354 R 990282 CDS YP_005253062.1 378989898 complement(2650892..2651113) 1 NC_016863.1 putative cytoplasmic protein 2651113 yfgJ 990282002549 yfgJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253062.1 2650892 R 990282 CDS YP_005253063.1 378989899 complement(2651202..2652674) 1 NC_016863.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows differen; GTP-binding protein EngA 2652674 engA 990282002550 engA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GTP-binding protein EngA YP_005253063.1 2651202 R 990282 CDS YP_005253064.1 378989900 complement(2652793..2653971) 1 NC_016863.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 2653971 yfgL 990282002551 yfgL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane protein assembly complex subunit YfgL YP_005253064.1 2652793 R 990282 CDS YP_005253065.1 378989901 complement(2653982..2654602) 1 NC_016863.1 putative inner membrane protein 2654602 yfgM 990282002552 yfgM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253065.1 2653982 R 990282 CDS YP_005253066.1 378989902 complement(2654616..2655890) 1 NC_016863.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organis; histidyl-tRNA synthetase 2655890 hisS 990282002553 hisS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 histidyl-tRNA synthetase YP_005253066.1 2654616 R 990282 CDS YP_005253067.1 378989903 complement(2656001..2657119) 1 NC_016863.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2657119 gcpE 990282002554 gcpE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_005253067.1 2656001 R 990282 CDS YP_005253068.1 378989904 complement(2657146..2658150) 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC75569.1); cytoskeletal protein RodZ 2658150 yfgA 990282002555 yfgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytoskeletal protein RodZ YP_005253068.1 2657146 R 990282 CDS YP_005253069.1 378989905 complement(2658442..2659608) 1 NC_016863.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2659608 yfgB 990282002556 yfgB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribosomal RNA large subunit methyltransferase N YP_005253069.1 2658442 R 990282 CDS YP_005253070.1 378989906 complement(2659815..2660246) 1 NC_016863.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2660246 ndk 990282002557 ndk Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nucleoside diphosphate kinase YP_005253070.1 2659815 R 990282 CDS YP_005253071.1 378989907 complement(2660367..2661230) 1 NC_016863.1 similar to Escherichia coli hydrogenase 4 Fe-S subunit (AAC75541.1); putative polyferredoxin 2661230 990282002558 STMUK_2559 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative polyferredoxin YP_005253071.1 2660367 R 990282 CDS YP_005253072.1 378989908 complement(2661230..2662039) 1 NC_016863.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit C (AAC73982.1); putative dimethylsulfoxide reductase 2662039 990282002559 STMUK_2560 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dimethylsulfoxide reductase YP_005253072.1 2661230 R 990282 CDS YP_005253073.1 378989909 complement(2662032..2662661) 1 NC_016863.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); putative anaerobic dimethylsulfoxide reductase 2662661 990282002560 STMUK_2561 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative anaerobic dimethylsulfoxide reductase YP_005253073.1 2662032 R 990282 CDS YP_005253074.1 378989910 complement(2662658..2665081) 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase, major subunit (AAC74660.1); putative anaerobic dimethylsulfoxide reductase 2665081 990282002561 STMUK_2562 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative anaerobic dimethylsulfoxide reductase YP_005253074.1 2662658 R 990282 CDS YP_005253075.1 378989911 complement(2665210..2667525) 1 NC_016863.1 penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 2667525 pbpC 990282002562 pbpC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 penicillin-binding protein 1C YP_005253075.1 2665210 R 990282 CDS YP_005253076.1 378989912 complement(2667526..2672460) 1 NC_016863.1 putative inner membrane lipoprotein 2672460 990282002563 STMUK_2564 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane lipoprotein YP_005253076.1 2667526 R 990282 CDS YP_005253077.1 378989913 2672669..2673511 1 NC_016863.1 catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 2673511 sseA 990282002564 sseA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-mercaptopyruvate sulfurtransferase YP_005253077.1 2672669 D 990282 CDS YP_005253078.1 378989914 2673758..2674426 1 NC_016863.1 putative cytoplasmic protein 2674426 990282002565 STMUK_2566 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253078.1 2673758 D 990282 CDS YP_005253079.1 378989915 complement(2674995..2675780) 1 NC_016863.1 enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB 2675780 sseB 990282002566 sseB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 enhanced serine sensitivity protein SseB YP_005253079.1 2674995 R 990282 CDS YP_005253080.1 378989916 complement(2675881..2677164) 1 NC_016863.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 2677164 pepB 990282002567 pepB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aminopeptidase B YP_005253080.1 2675881 R 990282 CDS YP_005253081.1 378989917 complement(2677411..2677611) 1 NC_016863.1 believed to be involved in assembly of Fe-S clusters; hypothetical protein 2677611 yfhJ 990282002568 yfhJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253081.1 2677411 R 990282 CDS YP_005253082.1 378989918 complement(2677623..2677958) 1 NC_016863.1 similar to Escherichia coli 2FE-2S ferredoxin, electron carrer protein (AAC75578.1); believed to be involved in assembly of Fe-S clusters; electron carrer protein 2677958 fdx 990282002569 fdx Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 electron carrer protein YP_005253082.1 2677623 R 990282 CDS YP_005253083.1 378989919 complement(2677960..2679810) 1 NC_016863.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2679810 hscA 990282002570 hscA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chaperone protein HscA YP_005253083.1 2677960 R 990282 CDS YP_005253084.1 378989920 complement(2679823..2680338) 1 NC_016863.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 2680338 hscB 990282002571 hscB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 co-chaperone HscB YP_005253084.1 2679823 R 990282 CDS YP_005253085.1 378989921 complement(2680534..2680857) 1 NC_016863.1 forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein 2680857 iscA 990282002572 iscA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 iron-sulfur cluster assembly protein YP_005253085.1 2680534 R 990282 CDS YP_005253086.1 378989922 complement(2680886..2681272) 1 NC_016863.1 similar to NifU; involved in Fe-S cluster formation; scaffold protein 2681272 nifU 990282002573 nifU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 scaffold protein YP_005253086.1 2680886 R 990282 CDS YP_005253087.1 378989923 complement(2681300..2682514) 1 NC_016863.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 2682514 nifS 990282002574 nifS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cysteine desulfurase YP_005253087.1 2681300 R 990282 CDS YP_005253088.1 378989924 complement(2682695..2683189) 1 NC_016863.1 regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR 2683189 yfhP 990282002575 yfhP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator IscR YP_005253088.1 2682695 R 990282 CDS YP_005253089.1 378989925 complement(2683349..2684080) 1 NC_016863.1 similar to Escherichia coli putative ATP synthase beta subunit (AAC75585.1); putative rRNA methylase 2684080 990282002576 STMUK_2577 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative rRNA methylase YP_005253089.1 2683349 R 990282 CDS YP_005253090.1 378989926 2684199..2685002 1 NC_016863.1 similar to Escherichia coli enhances synthesis of sigma32 in mutant; extragenic suppressor, may modulate RNAse III lethal action (AAC75586.1); inositol monophosphatase 2685002 suhB 990282002577 suhB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 inositol monophosphatase YP_005253090.1 2684199 D 990282 CDS YP_005253091.1 378989927 2685147..2686025 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC75587.1); putative hydrolase 2686025 990282002578 STMUK_2579 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase YP_005253091.1 2685147 D 990282 CDS YP_005253092.1 378989928 2686207..2687250 1 NC_016863.1 anaerobic sulfite reductase subunit A (anaerobic sulfite reductaseiron-sulfur subunit) (SW:ASRA_SALTY); anaerobic sulfide reductase 2687250 asrA 990282002579 asrA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anaerobic sulfide reductase YP_005253092.1 2686207 D 990282 CDS YP_005253093.1 378989929 2687254..2688072 1 NC_016863.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 2688072 asrB 990282002580 asrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anaerobic sulfite reductase subunit B YP_005253093.1 2687254 D 990282 CDS YP_005253094.1 378989930 2688083..2689096 1 NC_016863.1 anaerobic sulfite reductase subunit C (SW:ASRC_SALTY); anaerobic sulfide reductase 2689096 asrC 990282002581 asrC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anaerobic sulfide reductase YP_005253094.1 2688083 D 990282 CDS YP_005253095.1 378989931 complement(2689097..2690083) 1 NC_016863.1 putative inner membrane protein 2690083 990282002582 STMUK_2583 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253095.1 2689097 R 990282 CDS YP_005253096.1 378989932 complement(2690074..2690712) 1 NC_016863.1 putative periplasmic protein; hypothetical protein 2690712 990282002583 STMUK_2584 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253096.1 2690074 R 990282 CDS YP_005253097.1 378989933 2690838..2692115 1 NC_016863.1 stationary phase inducible protein CsiE 2692115 csiE 990282002584 csiE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 stationary phase inducible protein CsiE YP_005253097.1 2690838 D 990282 CDS YP_005253098.1 378989934 complement(2692110..2693249) 1 NC_016863.1 putative transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; putative 3-phenylpropionic acid transporter 2693249 hcaT 990282002585 hcaT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative 3-phenylpropionic acid transporter YP_005253098.1 2692110 R 990282 CDS YP_005253099.1 378989935 complement(2693445..2694698) 1 NC_016863.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2694698 glyA 990282002586 glyA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 serine hydroxymethyltransferase YP_005253099.1 2693445 R 990282 CDS YP_005253100.1 378989936 2695023..2696213 1 NC_016863.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2696213 hmpA 990282002587 hmpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitric oxide dioxygenase YP_005253100.1 2695023 D 990282 CDS YP_005253101.1 378989937 2696395..2697939 1 NC_016863.1 regulates the cadBA operon; DNA-binding transcriptional activator CadC 2697939 cadC 990282002588 cadC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator CadC YP_005253101.1 2696395 D 990282 CDS YP_005253102.1 378989938 2698300..2699631 1 NC_016863.1 antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 2699631 cadB 990282002589 cadB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lysine/cadaverine antiporter YP_005253102.1 2698300 D 990282 CDS YP_005253103.1 378989939 2699714..2701858 1 NC_016863.1 lysine decarboxylase; inducible (SW:DCLY_SALTY); lysine decarboxylase 1 2701858 cadA 990282002590 cadA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lysine decarboxylase 1 YP_005253103.1 2699714 D 990282 CDS YP_005253104.1 378989940 2701914..2703374 1 NC_016863.1 similar to Escherichia coli putative peptide transporter (AAC77091.1); POT family; putative di-/tripeptide transport protein 2703374 yjdL 990282002591 yjdL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative di-/tripeptide transport protein YP_005253104.1 2701914 D 990282 CDS YP_005253105.1 378989941 complement(2703423..2703761) 1 NC_016863.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts w; nitrogen regulatory protein P-II 1 2703761 glnB 990282002592 glnB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrogen regulatory protein P-II 1 YP_005253105.1 2703423 R 990282 CDS YP_005253106.1 378989942 complement(2703838..2705175) 1 NC_016863.1 similar to Escherichia coli putative 2-component transcriptional regulator (AAC75607.1); regulator of two-component regulator protein; EBP family; putative transcriptional regulator 2705175 yfhA 990282002593 yfhA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253106.1 2703838 R 990282 CDS YP_005253107.1 378989943 complement(2705172..2705936) 1 NC_016863.1 similar to Escherichia coli putative alpha helix protein (AAC75608.1); regulator of two-component regulator protein; EBP familiiy; hypothetical protein 2705936 yfhG 990282002594 yfhG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253107.1 2705172 R 990282 CDS YP_005253108.1 378989944 complement(2705938..2707380) 1 NC_016863.1 similar to Escherichia coli putative 2-component sensor protein (AAC75609.1); regulatory protein; putative sensor kinase 2707380 yfhK 990282002595 yfhK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sensor kinase YP_005253108.1 2705938 R 990282 CDS YP_005253109.1 378989945 complement(2708018..2711905) 1 NC_016863.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 2711905 purG 990282002596 purG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoribosylformylglycinamidine synthase YP_005253109.1 2708018 R 990282 CDS YP_005253110.1 378989946 2711927..2712160 1 NC_016863.1 hypothetical protein 2712160 990282002597 STMUK_2598 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253110.1 2711927 D 990282 CDS YP_005253111.1 378989947 2712161..2713705 1 NC_016863.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 2713705 yfhD 990282002598 yfhD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transglycosylase YP_005253111.1 2712161 D 990282 CDS YP_005253112.1 378989948 complement(2713756..2714307) 1 NC_016863.1 similar to Escherichia coli putative deaminase (AAC75612.1); tRNA-specific adenosine deaminase 2714307 yfhC 990282002599 yfhC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA-specific adenosine deaminase YP_005253112.1 2713756 R 990282 CDS YP_005253113.1 378989949 complement(2714332..2714967) 1 NC_016863.1 hypothetical protein 2714967 yfhB 990282002600 yfhB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253113.1 2714332 R 990282 CDS YP_005253114.1 378989950 complement(2714971..2716332) 1 NC_016863.1 similar to Escherichia coli putative PTS enzyme II (AAC75482.1); putative phosphotransferase system IIB component 2716332 990282002601 STMUK_2602 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphotransferase system IIB component YP_005253114.1 2714971 R 990282 CDS YP_005253115.1 378989951 complement(2716343..2717236) 1 NC_016863.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 2717236 yfeU 990282002602 yfeU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-acetylmuramic acid 6-phosphate etherase YP_005253115.1 2716343 R 990282 CDS YP_005253116.1 378989952 2717352..2718200 1 NC_016863.1 putative ABC superfamily membrane protein; putative DNA-binding transcriptional regulator 2718200 yfhH 990282002603 yfhH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA-binding transcriptional regulator YP_005253116.1 2717352 D 990282 CDS YP_005253117.1 378989953 complement(2718239..2719156) 1 NC_016863.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 2719156 990282002604 STMUK_2605 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-dehydropantoate 2-reductase YP_005253117.1 2718239 R 990282 CDS YP_005253118.1 378989954 complement(2719178..2720374) 1 NC_016863.1 similar to Escherichia coli putative resistance protein (AAC76571.1); putative permease 2720374 990282002605 STMUK_2606 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005253118.1 2719178 R 990282 CDS YP_005253119.1 378989955 2720490..2721416 1 NC_016863.1 similar to Escherichia coli cyn operon positive regulator (AAC73441.1); LysR family; putative transcriptional regulator 2721416 990282002606 STMUK_2607 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253119.1 2720490 D 990282 CDS YP_005253120.1 378989956 2721454..2721714 1 NC_016863.1 putative ferredoxin 2721714 yfhL 990282002607 yfhL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ferredoxin YP_005253120.1 2721454 D 990282 CDS YP_005253121.1 378989957 complement(2721826..2722206) 1 NC_016863.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 2722206 acpS 990282002608 acpS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4'-phosphopantetheinyl transferase YP_005253121.1 2721826 R 990282 CDS YP_005253122.1 378989958 complement(2722206..2722937) 1 NC_016863.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 2722937 pdxJ 990282002609 pdxJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyridoxine 5'-phosphate synthase YP_005253122.1 2722206 R 990282 CDS YP_005253123.1 378989959 complement(2722949..2723677) 1 NC_016863.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 2723677 recO 990282002610 recO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA repair protein RecO YP_005253123.1 2722949 R 990282 CDS YP_005253124.1 378989960 complement(2723689..2724594) 1 NC_016863.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested du; GTP-binding protein Era 2724594 era 990282002611 era Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GTP-binding protein Era YP_005253124.1 2723689 R 990282 CDS YP_005253125.1 378989961 complement(2724591..2725271) 1 NC_016863.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 2725271 rnc 990282002612 rnc Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonuclease III YP_005253125.1 2724591 R 990282 CDS YP_005253126.1 378989962 complement(2725545..2726519) 1 NC_016863.1 catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I 2726519 lepB 990282002613 lepB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 signal peptidase I YP_005253126.1 2725545 R 990282 CDS YP_005253127.1 378989963 complement(2726536..2728335) 1 NC_016863.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2728335 lepA 990282002614 lepA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GTP-binding protein LepA YP_005253127.1 2726536 R 990282 CDS YP_005253128.1 378989964 2728740..2730233 1 NC_016863.1 leucine-rich repeat protein; hypothetical protein 2730233 gogB 990282002615 gogB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253128.1 2728740 D 990282 CDS YP_005253129.1 378989965 2731090..2731635 1 NC_016863.1 similar to transposase; transposase-like protein 2731635 990282002616 STMUK_2617 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transposase-like protein YP_005253129.1 2731090 D 990282 CDS YP_005253130.1 378989966 2732747..2732974 1 NC_016863.1 similar to pagK; PagK-like protein 2732974 990282002617 STMUK_2618 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PagK-like protein YP_005253130.1 2732747 D 990282 CDS YP_005253131.1 378989967 complement(2733071..2733649) 1 NC_016863.1 phage tail assembly protein (gi|2460256); phage tail assembly-like protein 2733649 990282002618 STMUK_2619 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phage tail assembly-like protein YP_005253131.1 2733071 R 990282 CDS YP_005253132.1 378989968 complement(2733639..2734463) 1 NC_016863.1 phage tail assembly protein (gi|2460256); phage tail assembly-like protein 2734463 990282002619 STMUK_2620 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phage tail assembly-like protein YP_005253132.1 2733639 R 990282 CDS YP_005253133.1 378989969 complement(2734460..2736832) 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC74454.1); tail fiber-like protein 2736832 990282002620 STMUK_2621 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tail fiber-like protein YP_005253133.1 2734460 R 990282 CDS YP_005253134.1 378989970 complement(2736886..2737128) 1 NC_016863.1 similar to hypothetical protein SNSL254_A2795 (Pid: YP_002041853.1).; hypothetical protein 2737128 990282002621 STMUK_2622 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253134.1 2736886 R 990282 CDS YP_005253135.1 378989971 complement(2737167..2740529) 1 NC_016863.1 similar to host specificity protein-J in phage lambda; host specificity protein-J-like protein 2740529 990282002622 STMUK_2623 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 host specificity protein-J-like protein YP_005253135.1 2737167 R 990282 CDS YP_005253136.1 378989972 complement(2740591..2741238) 1 NC_016863.1 similar to tail assembly protein I in phage lambda; tail assembly protein I-like protein 2741238 990282002623 STMUK_2624 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tail assembly protein I-like protein YP_005253136.1 2740591 R 990282 CDS YP_005253137.1 378989973 complement(2741136..2741735) 1 NC_016863.1 similar to tail assembly protein K in phage lambda; tail assembly protein K-like protein 2741735 990282002624 STMUK_2625 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tail assembly protein K-like protein YP_005253137.1 2741136 R 990282 CDS YP_005253138.1 378989974 complement(2741880..2742578) 1 NC_016863.1 similar to phage tail component L; phage tail component L-like protein 2742578 990282002625 STMUK_2626 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phage tail component L-like protein YP_005253138.1 2741880 R 990282 CDS YP_005253139.1 378989975 complement(2742588..2742917) 1 NC_016863.1 similar to lambda phage M tail component (gi|2232363); phage tail component M-like protein 2742917 990282002626 STMUK_2627 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phage tail component M-like protein YP_005253139.1 2742588 R 990282 CDS YP_005253140.1 378989976 complement(2742920..2746015) 1 NC_016863.1 similar to lambda phage tail component H (gi|2232364); phage tail component H-like protein 2746015 990282002627 STMUK_2628 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phage tail component H-like protein YP_005253140.1 2742920 R 990282 CDS YP_005253141.1 378989977 complement(2745987..2746325) 1 NC_016863.1 similar to minor tail protein; minor tail-like protein 2746325 990282002628 STMUK_2629 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 minor tail-like protein YP_005253141.1 2745987 R 990282 CDS YP_005253142.1 378989978 complement(2746322..2746717) 1 NC_016863.1 similar to minor tail protein; minor tail-like protein 2746717 990282002629 STMUK_2630 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 minor tail-like protein YP_005253142.1 2746322 R 990282 CDS YP_005253143.1 378989979 complement(2746768..2747514) 1 NC_016863.1 similar to major tail protein; major tail-like protein 2747514 990282002630 STMUK_2631 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 major tail-like protein YP_005253143.1 2746768 R 990282 CDS YP_005253144.1 378989980 complement(2747522..2747923) 1 NC_016863.1 hypothetical protein 2747923 990282002631 STMUK_2632 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253144.1 2747522 R 990282 CDS YP_005253145.1 378989981 2747912..2749162 1 NC_016863.1 similar to Escherichia coli putative virulence protein (AAC74514.1); putative virulence protein 2749162 990282002632 STMUK_2633 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative virulence protein YP_005253145.1 2747912 D 990282 CDS YP_005253146.1 378989982 complement(2749211..2749789) 1 NC_016863.1 similar to minor tail protein Z; minor tail protein Z-like protein 2749789 990282002633 STMUK_2634 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 minor tail protein Z-like protein YP_005253146.1 2749211 R 990282 CDS YP_005253147.1 378989983 complement(2749817..2750200) 1 NC_016863.1 similar to minor capsid protein FII of phage N15; minor capsid protein FII 2750200 990282002634 STMUK_2635 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 minor capsid protein FII YP_005253147.1 2749817 R 990282 CDS YP_005253148.1 378989984 complement(2750211..2750570) 1 NC_016863.1 similar to DNA packaging protein gp9 of phage N14; DNA packaging-like protein 2750570 990282002635 STMUK_2636 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA packaging-like protein YP_005253148.1 2750211 R 990282 CDS YP_005253149.1 378989985 complement(2750628..2751656) 1 NC_016863.1 similar to head protein gp7 of phage 21; phage head-like protein 2751656 990282002636 STMUK_2637 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phage head-like protein YP_005253149.1 2750628 R 990282 CDS YP_005253150.1 378989986 complement(2751711..2752058) 1 NC_016863.1 similar to head protein gpshp of phage 21; phage head-like protein 2752058 990282002637 STMUK_2638 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phage head-like protein YP_005253150.1 2751711 R 990282 CDS YP_005253151.1 378989987 complement(2752071..2753567) 1 NC_016863.1 similar to head-tail preconnector gp5 of phage 21; similar to Escherichia coli putative protease (AAC74354.1); head-tail preconnector-like protein 2753567 990282002638 STMUK_2639 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 head-tail preconnector-like protein YP_005253151.1 2752071 R 990282 CDS YP_005253152.1 378989988 complement(2753557..2755137) 1 NC_016863.1 similar to head-tail preconnector gp4 of phage 21; head-tail preconnector-like protein 2755137 990282002639 STMUK_2640 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 head-tail preconnector-like protein YP_005253152.1 2753557 R 990282 CDS YP_005253153.1 378989989 complement(2755134..2755337) 1 NC_016863.1 similar to head to tail joining protein; head-to-tail joining-like protein 2755337 990282002640 STMUK_2641 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 head-to-tail joining-like protein YP_005253153.1 2755134 R 990282 CDS YP_005253154.1 378989990 complement(2755321..2757252) 1 NC_016863.1 similar to terminase large chain gp2 of N15; terminase-like large protein 2757252 990282002641 STMUK_2642 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 terminase-like large protein YP_005253154.1 2755321 R 990282 CDS YP_005253155.1 378989991 complement(2757224..2757769) 1 NC_016863.1 similar to DNA packaging protein Nu1 of phage 21; similar to Qin prophage packaging protein NU1 (AAC74621.1); DNA packaging-like protein 2757769 990282002642 STMUK_2643 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA packaging-like protein YP_005253155.1 2757224 R 990282 CDS YP_005253156.1 378989992 2758056..2758457 1 NC_016863.1 hypothetical protein 2758457 990282002643 STMUK_2644 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253156.1 2758056 D 990282 CDS YP_005253157.1 378989993 complement(2758693..2759166) 1 NC_016863.1 similar to Escherichia coli bacteriophage lambda endopeptidase (AAC73657.1); endopeptidase-like protein 2759166 990282002644 STMUK_2645 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 endopeptidase-like protein YP_005253157.1 2758693 R 990282 CDS YP_005253158.1 378989994 complement(2759163..2759615) 1 NC_016863.1 similar to morphogenesis protein of phage B103; similar to Escherichia coli bacteriophage lambda lysozyme (AAC73656.1); morphogenesis-like protein 2759615 990282002645 STMUK_2646 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 morphogenesis-like protein YP_005253158.1 2759163 R 990282 CDS YP_005253159.1 378989995 complement(2759599..2759928) 1 NC_016863.1 hypothetical protein 2759928 990282002646 STMUK_2647 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253159.1 2759599 R 990282 CDS YP_005253160.1 378989996 2760204..2760890 1 NC_016863.1 hypothetical protein 2760890 990282002647 STMUK_2648 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253160.1 2760204 D 990282 CDS YP_005253161.1 378989997 complement(2761105..2761293) 1 NC_016863.1 similar to hypothetical protein SNSL254_A2822 (Pid: YP_002041879.1).; hypothetical protein 2761293 990282002648 STMUK_2649 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253161.1 2761105 R 990282 CDS YP_005253162.1 378989998 complement(2761800..2762363) 1 NC_016863.1 similar to antirepressor protein of phage P22; antirepressor-like protein 2762363 990282002650 STMUK_2651 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 antirepressor-like protein YP_005253162.1 2761800 R 990282 CDS YP_005253163.1 378989999 complement(2762636..2763313) 1 NC_016863.1 similar to antiterminator Q; antiterminator-like protein 2763313 990282002651 STMUK_2652 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 antiterminator-like protein YP_005253163.1 2762636 R 990282 CDS YP_005253164.1 378990000 complement(2763310..2763450) 1 NC_016863.1 hypothetical protein 2763450 990282002652 STMUK_2653 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253164.1 2763310 R 990282 CDS YP_005253165.1 378990001 complement(2763447..2764058) 1 NC_016863.1 hypothetical protein 2764058 990282002653 STMUK_2654 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253165.1 2763447 R 990282 CDS YP_005253166.1 378990002 complement(2764267..2764869) 1 NC_016863.1 hypothetical protein 2764869 990282002654 STMUK_2655 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253166.1 2764267 R 990282 CDS YP_005253167.1 378990003 complement(2765269..2765502) 1 NC_016863.1 hypothetical protein 2765502 990282002655 STMUK_2656 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253167.1 2765269 R 990282 CDS YP_005253168.1 378990004 2765772..2766764 1 NC_016863.1 similar to T3SS effector protein NleC (Pid: YP_003365223.1).; hypothetical protein 2766764 990282002656 STMUK_2657 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253168.1 2765772 D 990282 CDS YP_005253169.1 378990005 complement(2766791..2767309) 1 NC_016863.1 hypothetical protein 2767309 990282002657 STMUK_2658 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253169.1 2766791 R 990282 CDS YP_005253170.1 378990006 complement(2767306..2767653) 1 NC_016863.1 hypothetical protein 2767653 990282002658 STMUK_2659 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253170.1 2767306 R 990282 CDS YP_005253171.1 378990007 complement(2767664..2768413) 1 NC_016863.1 acts to load the DnaB helicase onto the intiation site durning DNA replication; putative replication protein 2768413 990282002659 STMUK_2660 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative replication protein YP_005253171.1 2767664 R 990282 CDS YP_005253172.1 378990008 complement(2768416..2769435) 1 NC_016863.1 similar to replication protein 15 (gi|7467283); replication protein 15-like protein 2769435 990282002660 STMUK_2661 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 replication protein 15-like protein YP_005253172.1 2768416 R 990282 CDS YP_005253173.1 378990009 complement(2769589..2769909) 1 NC_016863.1 similar to cI protein in phage N; probable regulatory protein (gi|7467282); cI-like protein 2769909 990282002661 STMUK_2662 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cI-like protein YP_005253173.1 2769589 R 990282 CDS YP_005253174.1 378990010 2770238..2770651 1 NC_016863.1 similar to hypothetical protein CKO_01905 (Pid: YP_001453468.1).; hypothetical protein 2770651 990282002662 STMUK_2663 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253174.1 2770238 D 990282 CDS YP_005253175.1 378990011 2770794..2771903 1 NC_016863.1 similar to regulatory protein CII (Pid: YP_003297469.1).; hypothetical protein 2771903 990282002663 STMUK_2664 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253175.1 2770794 D 990282 CDS YP_005253176.1 378990012 2772384..2772542 1 NC_016863.1 hypothetical protein 2772542 990282002665 STMUK_2666 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253176.1 2772384 D 990282 CDS YP_005253177.1 378990013 2772564..2772914 1 NC_016863.1 hypothetical protein 2772914 990282002666 STMUK_2667 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253177.1 2772564 D 990282 CDS YP_005253178.1 378990014 2773041..2775968 1 NC_016863.1 similar to exodeoxyribonuclease VIII (gi|7467238); exodeoxyribonuclease VIII-like protein 2775968 990282002667 STMUK_2668 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exodeoxyribonuclease VIII-like protein YP_005253178.1 2773041 D 990282 CDS YP_005253179.1 378990015 2775979..2777088 1 NC_016863.1 similar to enterohemolysin 1 in Escherichia coli; hypothetical protein AAC26069.1 (gi|7467267); enterohemolysin 1-like protein 2777088 990282002668 STMUK_2669 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 enterohemolysin 1-like protein YP_005253179.1 2775979 D 990282 CDS YP_005253180.1 378990016 2777131..2777370 1 NC_016863.1 putative cytoplasmic protein 2777370 990282002669 STMUK_2670 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253180.1 2777131 D 990282 CDS YP_005253181.1 378990017 2777411..2777695 1 NC_016863.1 similar to excisionase in phage phi-80; probable excisionase (gi|7467278); excisionase-like protein 2777695 990282002670 STMUK_2671 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 excisionase-like protein YP_005253181.1 2777411 D 990282 CDS YP_005253182.1 378990018 complement(2777673..2778902) 1 NC_016863.1 similar to integrase in phage (gi|7467280); integrase-like protein 2778902 990282002671 STMUK_2672 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 integrase-like protein YP_005253182.1 2777673 R 990282 CDS YP_005253183.1 378990019 complement(2779400..2779879) 1 NC_016863.1 involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC 2779879 rseC 990282002672 rseC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 SoxR reducing system protein RseC YP_005253183.1 2779400 R 990282 CDS YP_005253184.1 378990020 complement(2779876..2780832) 1 NC_016863.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE 2780832 rseB 990282002673 rseB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 periplasmic negative regulator of sigmaE YP_005253184.1 2779876 R 990282 CDS YP_005253185.1 378990021 complement(2780832..2781482) 1 NC_016863.1 similar to Escherichia coli anti sigma-E/sigma 24 factor; negative regulatory protein (AAC75625.1); anti-RNA polymerase sigma factor SigE 2781482 rseA 990282002674 rseA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anti-RNA polymerase sigma factor SigE YP_005253185.1 2780832 R 990282 CDS YP_005253186.1 378990022 complement(2781514..2782089) 1 NC_016863.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate; RNA polymerase sigma factor RpoE 2782089 rpoE 990282002675 rpoE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 RNA polymerase sigma factor RpoE YP_005253186.1 2781514 R 990282 CDS YP_005253187.1 378990023 2782514..2784136 1 NC_016863.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2784136 nadB 990282002676 nadB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-aspartate oxidase YP_005253187.1 2782514 D 990282 CDS YP_005253188.1 378990024 complement(2784121..2784858) 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC75628.1); putative transferase 2784858 yfiC 990282002677 yfiC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transferase YP_005253188.1 2784121 R 990282 CDS YP_005253189.1 378990025 2784989..2786323 1 NC_016863.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 2786323 srmB 990282002678 srmB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent RNA helicase SrmB YP_005253189.1 2784989 D 990282 CDS YP_005253190.1 378990026 complement(2786341..2787240) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75630.1); LysR family; putative transcriptional regulator 2787240 yfiE 990282002679 yfiE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253190.1 2786341 R 990282 CDS YP_005253191.1 378990027 2787343..2787930 1 NC_016863.1 neutral amino-acid efflux protein 2787930 yfiK 990282002680 yfiK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 neutral amino-acid efflux protein YP_005253191.1 2787343 D 990282 CDS YP_005253192.1 378990028 complement(2787992..2788375) 1 NC_016863.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 2788375 yfiD 990282002681 yfiD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 autonomous glycyl radical cofactor GrcA YP_005253192.1 2787992 R 990282 CDS YP_005253193.1 378990029 2788694..2789383 1 NC_016863.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2789383 ung 990282002682 ung Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 uracil-DNA glycosylase YP_005253193.1 2788694 D 990282 CDS YP_005253194.1 378990030 complement(2789499..2790536) 1 NC_016863.1 putative methyltransferase 2790536 yfiF 990282002683 yfiF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative methyltransferase YP_005253194.1 2789499 R 990282 CDS YP_005253195.1 378990031 2790740..2791159 1 NC_016863.1 similar to Escherichia coli putative thioredoxin-like protein (AAC75635.1); redox factor; thioredoxin 2 2791159 trxC 990282002684 trxC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thioredoxin 2 YP_005253195.1 2790740 D 990282 CDS YP_005253196.1 378990032 2791232..2791912 1 NC_016863.1 putative cytoplasmic protein 2791912 yfiP 990282002685 yfiP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253196.1 2791232 D 990282 CDS YP_005253197.1 378990033 2791966..2794626 1 NC_016863.1 putative acetyl-CoA synthetase 2794626 yfiQ 990282002686 yfiQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acetyl-CoA synthetase YP_005253197.1 2791966 D 990282 CDS YP_005253198.1 378990034 2794741..2796096 1 NC_016863.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2796096 pssA 990282002687 pssA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphatidylserine synthase YP_005253198.1 2794741 D 990282 CDS YP_005253199.1 378990035 2796141..2796464 1 NC_016863.1 hypothetical protein 2796464 yfiM 990282002688 yfiM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253199.1 2796141 D 990282 CDS YP_005253200.1 378990036 complement(2796461..2797762) 1 NC_016863.1 similar to Escherichia coli alpha-ketoglutarate permease (AAC75640.1); MFS family; alpha-ketoglutarate transporter 2797762 kgtP 990282002689 kgtP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alpha-ketoglutarate transporter YP_005253200.1 2796461 R 990282 CDS YP_005253201.1 378990037 complement(2797866..2798321) 1 NC_016863.1 putative cytoplasmic protein 2798321 990282002690 STMUK_2691 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253201.1 2797866 R 990282 CDS YP_005253202.1 378990038 complement(2804286..2806859) 1 NC_016863.1 similar to Escherichia coli heat shock protein (AAC75641.1); Hsp 100; part of novel multi-chaperone system with DnaK, DnaJ, and GrpE; protein disaggregation chaperone 2806859 clpB 990282002695 clpB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 protein disaggregation chaperone YP_005253202.1 2804286 R 990282 CDS YP_005253203.1 378990039 complement(2806989..2807720) 1 NC_016863.1 hypothetical protein 2807720 yfiH 990282002696 yfiH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253203.1 2806989 R 990282 CDS YP_005253204.1 378990040 complement(2807717..2808697) 1 NC_016863.1 responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D 2808697 rluD 990282002697 rluD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 23S rRNA pseudouridine synthase D YP_005253204.1 2807717 R 990282 CDS YP_005253205.1 378990041 2808829..2809566 1 NC_016863.1 with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly complex subunit YfiO 2809566 yfiO 990282002698 yfiO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane protein assembly complex subunit YfiO YP_005253205.1 2808829 D 990282 CDS YP_005253206.1 378990042 2809838..2810176 1 NC_016863.1 associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 2810176 yfiA 990282002699 yfiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 translation inhibitor protein RaiA YP_005253206.1 2809838 D 990282 CDS YP_005253207.1 378990043 2810280..2810327 1 NC_016863.1 hypothetical protein 2810327 990282002700 STMUK_2701 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253207.1 2810280 D 990282 CDS YP_005253208.1 378990044 2810427..2811587 1 NC_016863.1 catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 2811587 pheA 990282002701 pheA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional chorismate mutase/prephenate dehydratase YP_005253208.1 2810427 D 990282 CDS YP_005253209.1 378990045 complement(2811548..2812456) 1 NC_016863.1 putative cytoplasmic protein 2812456 990282002702 STMUK_2703 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253209.1 2811548 R 990282 CDS YP_005253210.1 378990046 complement(2812514..2813635) 1 NC_016863.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 2813635 tyrA 990282002703 tyrA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional chorismate mutase/prephenate dehydrogenase YP_005253210.1 2812514 R 990282 CDS YP_005253211.1 378990047 complement(2813645..2814715) 1 NC_016863.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 2814715 aroF 990282002704 aroF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_005253211.1 2813645 R 990282 CDS YP_005253212.1 378990048 2815155..2815673 1 NC_016863.1 hypothetical protein 2815673 yfiR 990282002705 yfiR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253212.1 2815155 D 990282 CDS YP_005253213.1 378990049 2815666..2816886 1 NC_016863.1 hypothetical protein 2816886 yfiN 990282002706 yfiN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253213.1 2815666 D 990282 CDS YP_005253214.1 378990050 complement(2817043..2817390) 1 NC_016863.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2817390 rplS 990282002707 rplS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L19 YP_005253214.1 2817043 R 990282 CDS YP_005253215.1 378990051 complement(2817431..2818198) 1 NC_016863.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 2818198 trmD 990282002708 trmD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA (guanine-N(1)-)-methyltransferase YP_005253215.1 2817431 R 990282 CDS YP_005253216.1 378990052 complement(2818243..2818791) 1 NC_016863.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 2818791 rimM 990282002709 rimM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 16S rRNA-processing protein RimM YP_005253216.1 2818243 R 990282 CDS YP_005253217.1 378990053 complement(2818810..2819058) 1 NC_016863.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2819058 rpsP 990282002710 rpsP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S16 YP_005253217.1 2818810 R 990282 CDS YP_005253218.1 378990054 complement(2819372..2820733) 1 NC_016863.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 2820733 ffh 990282002711 ffh Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 signal recognition particle protein YP_005253218.1 2819372 R 990282 CDS YP_005253219.1 378990055 2820899..2821690 1 NC_016863.1 CorE (gi|4877800); putative cytochrome c-type biogenesis protein; heme exporter protein C; hypothetical protein 2821690 corE 990282002712 corE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253219.1 2820899 D 990282 CDS YP_005253220.1 378990056 2821755..2822996 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75662.1); hypothetical protein 2822996 yfjD 990282002713 yfjD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253220.1 2821755 D 990282 CDS YP_005253221.1 378990057 2823117..2823722 1 NC_016863.1 putative cytoplasmic protein 2823722 990282002714 STMUK_2715 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253221.1 2823117 D 990282 CDS YP_005253224.1 378990060 2824470..2825348 1 NC_016863.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2825348 ppnK 990282002716 ppnK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 inorganic polyphosphate/ATP-NAD kinase YP_005253224.1 2824470 D 990282 CDS YP_005253225.1 378990061 2825434..2827095 1 NC_016863.1 similar to Escherichia coli protein used in recombination and DNA repair (AAC75665.1); recombination and repair protein 2827095 recN 990282002717 recN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 recombination and repair protein YP_005253225.1 2825434 D 990282 CDS YP_005253226.1 378990062 2827244..2827582 1 NC_016863.1 similar to Escherichia coli small membrane protein A (AAC75666.1); hypothetical protein 2827582 smpA 990282002718 smpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253226.1 2827244 D 990282 CDS YP_005253227.1 378990063 complement(2827748..2828038) 1 NC_016863.1 hypothetical protein 2828038 yfjF 990282002719 yfjF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253227.1 2827748 R 990282 CDS YP_005253228.1 378990064 complement(2828028..2828504) 1 NC_016863.1 lipid transport protein; hypothetical protein 2828504 yfjG 990282002720 yfjG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253228.1 2828028 R 990282 CDS YP_005253229.1 378990065 2828654..2829136 1 NC_016863.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca; SsrA-binding protein 2829136 smpB 990282002721 smpB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 SsrA-binding protein YP_005253229.1 2828654 D 990282 CDS YP_005253230.1 378990066 2829750..2841224 1 NC_016863.1 similar to large repetitive protein (Pid: YP_002143218.1).; hypothetical protein 2841224 990282002722 STMUK_2724 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253230.1 2829750 D 990282 CDS YP_005253231.1 378990067 2841289..2842698 1 NC_016863.1 similar to Escherichia coli putative resistance protein (AAC73673.1); putative outer membrane efflux protein 2842698 990282002723 STMUK_2725 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane efflux protein YP_005253231.1 2841289 D 990282 CDS YP_005253232.1 378990068 2842695..2844875 1 NC_016863.1 similar to Escherichia coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1); putative ABC transporter transmembrane region 2844875 990282002724 STMUK_2726 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter transmembrane region YP_005253232.1 2842695 D 990282 CDS YP_005253233.1 378990069 2844883..2846046 1 NC_016863.1 HlyD family secretion protein 2846046 990282002725 STMUK_2727 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 HlyD family secretion protein YP_005253233.1 2844883 D 990282 CDS YP_005253234.1 378990070 2846647..2847711 1 NC_016863.1 similar to Escherichia coli prophage CP4-57 integrase (AAC75670.1); integrase-like protein 2847711 990282002726 STMUK_2728 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 integrase-like protein YP_005253234.1 2846647 D 990282 CDS YP_005253235.1 378990071 2847939..2848532 1 NC_016863.1 hypothetical protein 2848532 990282002727 STMUK_2729 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253235.1 2847939 D 990282 CDS YP_005253236.1 378990072 2848922..2850115 1 NC_016863.1 putative cytoplasmic protein 2850115 990282002728 STMUK_2730 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253236.1 2848922 D 990282 CDS YP_005253237.1 378990073 complement(2850450..2851277) 1 NC_016863.1 putative cytoplasmic protein 2851277 990282002729 STMUK_2731 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253237.1 2850450 R 990282 CDS YP_005253238.1 378990074 2851728..2851943 1 NC_016863.1 putative cytoplasmic protein 2851943 990282002730 STMUK_2732 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253238.1 2851728 D 990282 CDS YP_005253239.1 378990075 2851979..2854048 1 NC_016863.1 putative inner membrane protein 2854048 990282002731 STMUK_2733 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253239.1 2851979 D 990282 CDS YP_005253240.1 378990076 2854551..2855834 1 NC_016863.1 excinuclease; putative ATPase 2855834 990282002732 STMUK_2734 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ATPase YP_005253240.1 2854551 D 990282 CDS YP_005253241.1 378990077 2855879..2856697 1 NC_016863.1 putative cytoplasmic protein 2856697 990282002733 STMUK_2735 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253241.1 2855879 D 990282 CDS YP_005253242.1 378990078 complement(2856851..2857207) 1 NC_016863.1 putative transcriptional regulator 2857207 990282002734 STMUK_2736 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253242.1 2856851 R 990282 CDS YP_005253243.1 378990079 2857302..2857586 1 NC_016863.1 similar to Escherichia coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); putative cytoplasmic protein 2857586 990282002735 STMUK_2737 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253243.1 2857302 D 990282 CDS YP_005253244.1 378990080 2857699..2858220 1 NC_016863.1 similar to Escherichia coli PTS system glucitol/sorbitol-specific IIC component; one of two (AAC75744.1); putative PTS system glucitol/sorbitol-specific enzyme II 2858220 990282002736 STMUK_2738 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative PTS system glucitol/sorbitol-specific enzyme II YP_005253244.1 2857699 D 990282 CDS YP_005253245.1 378990081 2858217..2858591 1 NC_016863.1 similar to Escherichia coli PTS system glucitol/sorbitol-specific enzyme IIA component (AAC75746.1); putative glucitol-specific PTS enzyme III 2858591 990282002737 STMUK_2739 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glucitol-specific PTS enzyme III YP_005253245.1 2858217 D 990282 CDS YP_005253246.1 378990082 2858588..2859568 1 NC_016863.1 similar to Escherichia coli PTS system glucitol/sorbitol-specific IIB component and second of two IIC components (AAC75745.1); putative glucitol-specific PTS enzyme III 2859568 990282002738 STMUK_2740 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glucitol-specific PTS enzyme III YP_005253246.1 2858588 D 990282 CDS YP_005253247.1 378990083 2859579..2860592 1 NC_016863.1 similar to Escherichia coli putative dehydrogenase (AAC74397.1); putative dehydrogenase 2860592 990282002739 STMUK_2741 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dehydrogenase YP_005253247.1 2859579 D 990282 CDS YP_005253248.1 378990084 2860887..2862089 1 NC_016863.1 putative hexulose 6 phosphate synthase 2862089 990282002740 STMUK_2742 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hexulose 6 phosphate synthase YP_005253248.1 2860887 D 990282 CDS YP_005253249.1 378990085 complement(2862163..2862798) 1 NC_016863.1 similar to Escherichia coli probable hexulose-6-phosphate synthase (AAC77153.1); putative hexulose 6 phosphate synthase 2862798 990282002741 STMUK_2743 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hexulose 6 phosphate synthase YP_005253249.1 2862163 R 990282 CDS YP_005253250.1 378990086 complement(2862822..2863385) 1 NC_016863.1 putative sugar phosphate aminotransferase 2863385 990282002742 STMUK_2744 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar phosphate aminotransferase YP_005253250.1 2862822 R 990282 CDS YP_005253251.1 378990087 complement(2863385..2864227) 1 NC_016863.1 putative cytoplasmic protein 2864227 990282002743 STMUK_2745 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253251.1 2863385 R 990282 CDS YP_005253252.1 378990088 2866121..2867800 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC73180.1); putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component 2867800 990282002745 STMUK_2747 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component YP_005253252.1 2866121 D 990282 CDS YP_005253253.1 378990089 2868917..2869792 1 NC_016863.1 putative integrase 2869792 990282002746 STMUK_2748 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative integrase YP_005253253.1 2868917 D 990282 CDS YP_005253254.1 378990090 2869958..2871832 1 NC_016863.1 putative inner membrane protein 2871832 990282002747 STMUK_2749 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253254.1 2869958 D 990282 CDS YP_005253255.1 378990091 complement(2872092..2873375) 1 NC_016863.1 putative inner membrane protein 2873375 990282002748 STMUK_2750 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253255.1 2872092 R 990282 CDS YP_005253256.1 378990092 2873953..2874549 1 NC_016863.1 similar to E. coli prophage CP4-57 integrase(AAC75670.1); Blastp hit to AAC75670.1 (413 aa); putative integrase 2874549 990282002749 STMUK_2751 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative integrase YP_005253256.1 2873953 D 990282 CDS YP_005253257.1 378990093 complement(2875003..2875332) 1 NC_016863.1 putative integrase core domain protein 2875332 990282002750 STMUK_2752 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative integrase core domain protein YP_005253257.1 2875003 R 990282 CDS YP_005253258.1 378990094 complement(2875554..2875820) 1 NC_016863.1 putative transposase 2875820 990282002751 STMUK_2753 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transposase YP_005253258.1 2875554 R 990282 CDS YP_005253259.1 378990095 complement(2876273..2876911) 1 NC_016863.1 putative cytoplasmic protein 2876911 990282002752 STMUK_2754 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253259.1 2876273 R 990282 CDS YP_005253260.1 378990096 complement(2876908..2878890) 1 NC_016863.1 superfamily I; putative DNA/RNA helicase 2878890 990282002753 STMUK_2755 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA/RNA helicase YP_005253260.1 2876908 R 990282 CDS YP_005253261.1 378990097 2879169..2879468 1 NC_016863.1 putative transposase 2879468 990282002754 STMUK_2756 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transposase YP_005253261.1 2879169 D 990282 CDS YP_005253262.1 378990098 2879465..2880331 1 NC_016863.1 similar to Escherichia coli IS3 putative transposase (AAC75150.1); putative transposase 2880331 990282002755 STMUK_2757 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transposase YP_005253262.1 2879465 D 990282 CDS YP_005253263.1 378990099 complement(2881111..2881650) 1 NC_016863.1 repressor of fliC (SW:FLJA_SALTY); flagellar synthesis; phase-1 flagellin repressor 2881650 fljA 990282002756 fljA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phase-1 flagellin repressor YP_005253263.1 2881111 R 990282 CDS YP_005253264.1 378990100 complement(2881718..2883238) 1 NC_016863.1 structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; flagellin 2883238 fljB 990282002757 fljB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flagellin YP_005253264.1 2881718 R 990282 CDS YP_005253265.1 378990101 2883330..2883902 1 NC_016863.1 DNA-invertase hin (SW:HIN_SALTY); regulation of flagellar gene expression by site-specific H inversion of DNA; DNA-invertase Hin 2883902 hin 990282002758 hin Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-invertase Hin YP_005253265.1 2883330 D 990282 CDS YP_005253266.1 378990102 2884865..2885980 1 NC_016863.1 related to UDP-glucuronosyltransferase; putative glycosyl transferase 2885980 iroB 990282002759 iroB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyl transferase YP_005253266.1 2884865 D 990282 CDS YP_005253267.1 378990103 2886061..2889714 1 NC_016863.1 similar to Escherichia coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1); putative ABC transporter protein 2889714 iroC 990282002760 iroC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter protein YP_005253267.1 2886061 D 990282 CDS YP_005253268.1 378990104 2889824..2891068 1 NC_016863.1 similar to Escherichia coli enterochelin esterase (AAC73686.1); Fes; enterochelin esterase 2891068 iroD 990282002761 iroD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 enterochelin esterase YP_005253268.1 2889824 D 990282 CDS YP_005253269.1 378990105 2891100..2892035 1 NC_016863.1 alpha/beta superfamily; putative hydrolase 2892035 iroE 990282002762 iroE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase YP_005253269.1 2891100 D 990282 CDS YP_005253270.1 378990106 complement(2892077..2894257) 1 NC_016863.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 2894257 iroN 990282002763 iroN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane receptor FepA YP_005253270.1 2892077 R 990282 CDS YP_005253271.1 378990107 complement(2894783..2895115) 1 NC_016863.1 putative inner membrane protein 2895115 990282002764 STMUK_2766 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253271.1 2894783 R 990282 CDS YP_005253272.1 378990108 complement(2895290..2896342) 1 NC_016863.1 PipB2; similar to STM1088; contains pentapeptide repeats; secreted by SPI-2 type III secretion; localizes to Salmonella-containing vacuole and host cell membranes; secreted effector protein 2896342 pipB2 990282002765 pipB2 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secreted effector protein YP_005253272.1 2895290 R 990282 CDS YP_005253273.1 378990109 2896861..2897790 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC73964.1); similar to virK in Shigella; virulence protein 2897790 virK 990282002766 virK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 virulence protein YP_005253273.1 2896861 D 990282 CDS YP_005253274.1 378990110 2898083..2898979 1 NC_016863.1 putative transcriptional activator 2898979 mig14 990282002767 mig14 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional activator YP_005253274.1 2898083 D 990282 CDS YP_005253275.1 378990111 2899495..2899608 1 NC_016863.1 similar to putative inner membrane protein (Pid: YP_002115736.1).; hypothetical protein 2899608 990282002768 STMUK_2770 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253275.1 2899495 D 990282 CDS YP_005253276.1 378990112 complement(2899701..2900714) 1 NC_016863.1 putative nickel transporter 2900714 nixA 990282002769 nixA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative nickel transporter YP_005253276.1 2899701 R 990282 CDS YP_005253277.1 378990113 complement(2900847..2902262) 1 NC_016863.1 similar to Escherichia coli putative 2-component sensor protein (AAC76062.1); tricarboxylic transport; regulatory protein 2902262 tctE 990282002770 tctE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 regulatory protein YP_005253277.1 2900847 R 990282 CDS YP_005253278.1 378990114 complement(2902249..2902923) 1 NC_016863.1 transcriptional regulatory protein TctD (SW:TCTD_SALTY); tricarboxylic transport; regulatory protein 2902923 tctD 990282002771 tctD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 regulatory protein YP_005253278.1 2902249 R 990282 CDS YP_005253279.1 378990115 2903078..2904055 1 NC_016863.1 tricarboxylic transport 2904055 990282002772 STMUK_2774 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tricarboxylic transport YP_005253279.1 2903078 D 990282 CDS YP_005253280.1 378990116 2904067..2904501 1 NC_016863.1 tricarboxylic transport 2904501 990282002773 STMUK_2775 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tricarboxylic transport YP_005253280.1 2904067 D 990282 CDS YP_005253281.1 378990117 2904512..2906026 1 NC_016863.1 tricarboxylic transport 2906026 990282002774 STMUK_2776 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tricarboxylic transport YP_005253281.1 2904512 D 990282 CDS YP_005253282.1 378990118 2906320..2907306 1 NC_016863.1 in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms h; hypothetical protein 2907306 990282002775 STMUK_2777 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253282.1 2906320 D 990282 CDS YP_005253283.1 378990119 2907332..2908600 1 NC_016863.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 2908600 ygaF 990282002776 ygaF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydroxyglutarate oxidase YP_005253283.1 2907332 D 990282 CDS YP_005253284.1 378990120 2908622..2910070 1 NC_016863.1 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 2910070 gabD 990282002777 gabD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 succinate-semialdehyde dehydrogenase I YP_005253284.1 2908622 D 990282 CDS YP_005253285.1 378990121 2910085..2911368 1 NC_016863.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2911368 gabT 990282002778 gabT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-aminobutyrate aminotransferase YP_005253285.1 2910085 D 990282 CDS YP_005253286.1 378990122 2911498..2912898 1 NC_016863.1 similar to Escherichia coli transport permease protein of gamma-aminobutyrate (AAC75710.1); APC family; RpoS dependent; gamma-aminobutyrate transporter 2912898 gabP 990282002779 gabP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 gamma-aminobutyrate transporter YP_005253286.1 2911498 D 990282 CDS YP_005253287.1 378990123 2912940..2913617 1 NC_016863.1 regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 2913617 ygaE 990282002780 ygaE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator CsiR YP_005253287.1 2912940 D 990282 CDS YP_005253288.1 378990124 complement(2913639..2914088) 1 NC_016863.1 putative LysM domain; LysM domain/BON superfamily protein 2914088 ygaU 990282002781 ygaU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 LysM domain/BON superfamily protein YP_005253288.1 2913639 R 990282 CDS YP_005253289.1 378990125 complement(2914188..2914346) 1 NC_016863.1 YqaE family; putative transport protein 2914346 yqaE 990282002782 yqaE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005253289.1 2914188 R 990282 CDS YP_005253290.1 378990126 2914529..2914828 1 NC_016863.1 ArsR family; putative regulatory protein 2914828 990282002783 STMUK_2785 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005253290.1 2914529 D 990282 CDS YP_005253291.1 378990127 2914838..2915365 1 NC_016863.1 putative rhodanese-like sulfurtransferase 2915365 ygaP 990282002784 ygaP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative rhodanese-like sulfurtransferase YP_005253291.1 2914838 D 990282 CDS YP_005253292.1 378990128 2915444..2915623 1 NC_016863.1 similar to hypothetical protein SPAB_03475 (Pid: YP_001589655.1).; hypothetical protein 2915623 990282002785 STMUK_2787 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253292.1 2915444 D 990282 CDS YP_005253293.1 378990129 complement(2915713..2916114) 1 NC_016863.1 DNA-binding protein STPA (SW:STPA_SALTY); has chaperone activity; DNA binding protein 2916114 stpA 990282002786 stpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA binding protein YP_005253293.1 2915713 R 990282 CDS YP_005253294.1 378990130 2916813..2917262 1 NC_016863.1 putative inner membrane protein 2917262 990282002787 STMUK_2789 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253294.1 2916813 D 990282 CDS YP_005253295.1 378990131 complement(2917297..2917647) 1 NC_016863.1 hypothetical protein 2917647 ygaC 990282002788 ygaC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253295.1 2917297 R 990282 CDS YP_005253296.1 378990132 2917797..2918135 1 NC_016863.1 hypothetical protein 2918135 ygaM 990282002789 ygaM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253296.1 2917797 D 990282 CDS YP_005253297.1 378990133 complement(2918219..2919553) 1 NC_016863.1 similar to Escherichia coli putative regulator (AAC77296.1); GntR family; putative regulatory protein 2919553 990282002790 STMUK_2792 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005253297.1 2918219 R 990282 CDS YP_005253298.1 378990134 2919642..2920073 1 NC_016863.1 putative cytoplasmic protein 2920073 990282002791 STMUK_2793 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253298.1 2919642 D 990282 CDS YP_005253299.1 378990135 2920345..2920590 1 NC_016863.1 glutaredoxin-like protein NrdH (SW:NRDH_SALTY); hydrogen donor; glutaredoxin-like protein 2920590 nrdH 990282002792 nrdH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutaredoxin-like protein YP_005253299.1 2920345 D 990282 CDS YP_005253300.1 378990136 2920587..2920997 1 NC_016863.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 2920997 nrdI 990282002793 nrdI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonucleotide reductase stimulatory protein YP_005253300.1 2920587 D 990282 CDS YP_005253301.1 378990137 2920970..2923114 1 NC_016863.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2923114 nrdE 990282002794 nrdE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonucleotide-diphosphate reductase subunit alpha YP_005253301.1 2920970 D 990282 CDS YP_005253302.1 378990138 2923125..2924084 1 NC_016863.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2924084 nrdF 990282002795 nrdF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonucleotide-diphosphate reductase subunit beta YP_005253302.1 2923125 D 990282 CDS YP_005253303.1 378990139 2924439..2925641 1 NC_016863.1 with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter ATP-binding subunit 2925641 proV 990282002796 proV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycine betaine transporter ATP-binding subunit YP_005253303.1 2924439 D 990282 CDS YP_005253304.1 378990140 2925634..2926698 1 NC_016863.1 with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 2926698 proW 990282002797 proW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycine betaine transporter membrane protein YP_005253304.1 2925634 D 990282 CDS YP_005253305.1 378990141 2926768..2927763 1 NC_016863.1 with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 2927763 proX 990282002798 proX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycine betaine transporter periplasmic subunit YP_005253305.1 2926768 D 990282 CDS YP_005253306.1 378990142 2927928..2929112 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75728.1); putative inner membrane protein 2929112 990282002799 STMUK_2801 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253306.1 2927928 D 990282 CDS YP_005253307.1 378990143 2929609..2930139 1 NC_016863.1 DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 2930139 emrR 990282002800 emrR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional repressor MprA YP_005253307.1 2929609 D 990282 CDS YP_005253308.1 378990144 2930266..2931438 1 NC_016863.1 similar to Escherichia coli multidrug resistance secretion protein (AAC75732.1); multidrug resistance secretion protein 2931438 emrA 990282002801 emrA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multidrug resistance secretion protein YP_005253308.1 2930266 D 990282 CDS YP_005253309.1 378990145 2931455..2932993 1 NC_016863.1 similar to Escherichia coli multidrug resistance; probably membrane translocase (AAC75733.1); MFS family; putative multidrug transport protein 2932993 emrB 990282002802 emrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative multidrug transport protein YP_005253309.1 2931455 D 990282 CDS YP_005253310.1 378990146 complement(2933042..2934412) 1 NC_016863.1 putative glycoporin 2934412 990282002803 STMUK_2805 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycoporin YP_005253310.1 2933042 R 990282 CDS YP_005253311.1 378990147 complement(2934758..2935273) 1 NC_016863.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 2935273 luxS 990282002804 luxS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 S-ribosylhomocysteinase YP_005253311.1 2934758 R 990282 CDS YP_005253312.1 378990148 complement(2935423..2936979) 1 NC_016863.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 2936979 gshA 990282002805 gshA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamate--cysteine ligase YP_005253312.1 2935423 R 990282 CDS YP_005253313.1 378990149 complement(2937056..2937481) 1 NC_016863.1 putative inner membrane protein 2937481 yqaA 990282002806 yqaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253313.1 2937056 R 990282 CDS YP_005253314.1 378990150 complement(2937478..2938044) 1 NC_016863.1 YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; fructose-1-phosphatase 2938044 yqaB 990282002807 yqaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fructose-1-phosphatase YP_005253314.1 2937478 R 990282 CDS YP_005253315.1 378990151 complement(2939439..2939624) 1 NC_016863.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 2939624 csrA 990282002813 csrA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 carbon storage regulator YP_005253315.1 2939439 R 990282 CDS YP_005253316.1 378990152 complement(2939859..2942489) 1 NC_016863.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2942489 alaS 990282002814 alaS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alanyl-tRNA synthetase YP_005253316.1 2939859 R 990282 CDS YP_005253317.1 378990153 complement(2942725..2943225) 1 NC_016863.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 2943225 recX 990282002815 recX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 recombination regulator RecX YP_005253317.1 2942725 R 990282 CDS YP_005253318.1 378990154 complement(2943342..2944403) 1 NC_016863.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 2944403 recA 990282002816 recA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 recombinase A YP_005253318.1 2943342 R 990282 CDS YP_005253319.1 378990155 complement(2944488..2944985) 1 NC_016863.1 competence damage-inducible protein A 2944985 ygaD 990282002817 ygaD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 competence damage-inducible protein A YP_005253319.1 2944488 R 990282 CDS YP_005253320.1 378990156 complement(2945463..2946542) 1 NC_016863.1 membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B 2946542 mltB 990282002818 mltB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 murein hydrolase B YP_005253320.1 2945463 R 990282 CDS YP_005253321.1 378990157 2946796..2947359 1 NC_016863.1 similar to Escherichia coli PTS system; one of two glucitol/sorbitol-specific components (AAC75744.1); PTS family; glucitol/sorbitol-specific enzyme IIC component 2947359 srlA 990282002819 srlA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucitol/sorbitol-specific enzyme IIC component YP_005253321.1 2946796 D 990282 CDS YP_005253322.1 378990158 2947356..2948327 1 NC_016863.1 similar to Escherichia coli PTS system; one of two glucitol/sorbitol-specific components (AAC75745.1); PTS family; PTS system glucitol/sorbitol-specific transporter subunit IIB 2948327 srlE 990282002820 srlE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system glucitol/sorbitol-specific transporter subunit IIB YP_005253322.1 2947356 D 990282 CDS YP_005253323.1 378990159 2948339..2948701 1 NC_016863.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group t; PTS system glucitol/sorbitol-specific transporter subunit IIA 2948701 slrB 990282002821 slrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system glucitol/sorbitol-specific transporter subunit IIA YP_005253323.1 2948339 D 990282 CDS YP_005253324.1 378990160 2948713..2949492 1 NC_016863.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 2949492 srlD 990282002822 srlD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sorbitol-6-phosphate dehydrogenase YP_005253324.1 2948713 D 990282 CDS YP_005253325.1 378990161 2949568..2949927 1 NC_016863.1 regulator for glucitol utilization; DNA-binding transcriptional activator GutM 2949927 gutM 990282002823 gutM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator GutM YP_005253325.1 2949568 D 990282 CDS YP_005253326.1 378990162 2950125..2950898 1 NC_016863.1 regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 2950898 srlR 990282002824 srlR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional repressor SrlR YP_005253326.1 2950125 D 990282 CDS YP_005253327.1 378990163 2950930..2951856 1 NC_016863.1 catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; D-arabinose 5-phosphate isomerase 2951856 gutQ 990282002825 gutQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-arabinose 5-phosphate isomerase YP_005253327.1 2950930 D 990282 CDS YP_005253328.1 378990164 complement(2951853..2953373) 1 NC_016863.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 2953373 ygaA 990282002826 ygaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anaerobic nitric oxide reductase transcriptional regulator YP_005253328.1 2951853 R 990282 CDS YP_005253329.1 378990165 2953559..2954998 1 NC_016863.1 detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 2954998 990282002827 STMUK_2829 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anaerobic nitric oxide reductase flavorubredoxin YP_005253329.1 2953559 D 990282 CDS YP_005253330.1 378990166 2954995..2956128 1 NC_016863.1 catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 2956128 ygbD 990282002828 ygbD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitric oxide reductase YP_005253330.1 2954995 D 990282 CDS YP_005253331.1 378990167 complement(2956225..2958465) 1 NC_016863.1 similar to Escherichia coli transcriptional regulatory protein (AAC75754.1); hydrogenase maturation protein 2958465 hypF 990282002829 hypF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase maturation protein YP_005253331.1 2956225 R 990282 CDS YP_005253332.1 378990168 complement(2958611..2959156) 1 NC_016863.1 involved in electron transport from formate to hydrogen; electron transport protein HydN 2959156 hydN 990282002830 hydN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 electron transport protein HydN YP_005253332.1 2958611 R 990282 CDS YP_005253333.1 378990169 complement(2959357..2960166) 1 NC_016863.1 putative periplasmic protein; hypothetical protein 2960166 990282002831 STMUK_2833 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253333.1 2959357 R 990282 CDS YP_005253334.1 378990170 complement(2960193..2960663) 1 NC_016863.1 involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease 2960663 hycI 990282002832 hycI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase 3 maturation protease YP_005253334.1 2960193 R 990282 CDS YP_005253335.1 378990171 complement(2960656..2961066) 1 NC_016863.1 similar to Escherichia coli processing of large subunit HycE of hydrogenase 3; part of the FHL complex (AAC75760.1); hydrogenase 3 large subunit processing protein 2961066 hycH 990282002833 hycH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase 3 large subunit processing protein YP_005253335.1 2960656 R 990282 CDS YP_005253336.1 378990172 complement(2961063..2961830) 1 NC_016863.1 similar to Escherichia coli hydrogenase (AAC75761.1); hydrogenase 2961830 hycG 990282002834 hycG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase YP_005253336.1 2961063 R 990282 CDS YP_005253337.1 378990173 complement(2961830..2962372) 1 NC_016863.1 electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released; formate hydrogenlyase complex iron-sulfur subunit 2962372 hycF 990282002835 hycF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formate hydrogenlyase complex iron-sulfur subunit YP_005253337.1 2961830 R 990282 CDS YP_005253338.1 378990174 complement(2962382..2964091) 1 NC_016863.1 similar to Escherichia coli large subunit of hydrogenase 3; part of FHL complex (AAC75763.1); hydrogenase 3 large subunit 2964091 hycE 990282002836 hycE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase 3 large subunit YP_005253338.1 2962382 R 990282 CDS YP_005253339.1 378990175 complement(2964109..2965032) 1 NC_016863.1 similar to Escherichia coli membrane-spanning protein of hydrogenase 3; part of FHL complex (AAC75764.1); hydrogenase 3 membrane subunit 2965032 hycD 990282002837 hycD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase 3 membrane subunit YP_005253339.1 2964109 R 990282 CDS YP_005253340.1 378990176 complement(2965035..2966861) 1 NC_016863.1 catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); formate hydrogenlyase subunit 3 2966861 hycC 990282002838 hycC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formate hydrogenlyase subunit 3 YP_005253340.1 2965035 R 990282 CDS YP_005253341.1 378990177 complement(2966861..2967469) 1 NC_016863.1 similar to Escherichia coli probable small subunit of hydrogenase-3; iron-sulfur protein; part of FHL complex (AAC75766.1); hydrogenase-3 iron-sulfur subunit 2967469 hycB 990282002839 hycB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase-3 iron-sulfur subunit YP_005253341.1 2966861 R 990282 CDS YP_005253342.1 378990178 complement(2967615..2968076) 1 NC_016863.1 regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA 2968076 hycA 990282002840 hycA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formate hydrogenlyase regulatory protein HycA YP_005253342.1 2967615 R 990282 CDS YP_005253343.1 378990179 2968286..2968642 1 NC_016863.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF 2968642 hypA 990282002841 hypA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase nickel incorporation protein HybF YP_005253343.1 2968286 D 990282 CDS YP_005253344.1 378990180 2968711..2969583 1 NC_016863.1 GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 2969583 hypB 990282002842 hypB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase nickel incorporation protein HypB YP_005253344.1 2968711 D 990282 CDS YP_005253345.1 378990181 2969574..2969846 1 NC_016863.1 HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase; hydrogenase assembly chaperone 2969846 hypC 990282002843 hypC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase assembly chaperone YP_005253345.1 2969574 D 990282 CDS YP_005253346.1 378990182 2969846..2970967 1 NC_016863.1 similar to Escherichia coli pleiotrophic effects on 3 hydrogenase isozymes (AAC75771.1); putative hydrogenase formation protein 2970967 hypD 990282002844 hypD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrogenase formation protein YP_005253346.1 2969846 D 990282 CDS YP_005253347.1 378990183 2971006..2971974 1 NC_016863.1 similar to Escherichia coli protein which plays a structural role in maturation of all 3 hydrogenases (AAC75772.1); putative hydrogenase formation protein 2971974 hypE 990282002845 hypE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrogenase formation protein YP_005253347.1 2971006 D 990282 CDS YP_005253348.1 378990184 2972193..2974271 1 NC_016863.1 formate hydrogenlyase transcriptional activator for fdhF, hyc and hyp operons EBP family (SW:FHLA_SALTY); formate hydrogen-lyase transcriptional activator 2974271 fhlA 990282002846 fhlA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formate hydrogen-lyase transcriptional activator YP_005253348.1 2972193 D 990282 CDS YP_005253349.1 378990185 complement(2974333..2974677) 1 NC_016863.1 hypothetical protein 2974677 ygbA 990282002847 ygbA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253349.1 2974333 R 990282 CDS YP_005253350.1 378990186 2974859..2975776 1 NC_016863.1 SitA (gi|5231094); Salmonella iron transporter; Fur-regulated; putative periplasmic binding protein 2975776 sitA 990282002848 sitA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative periplasmic binding protein YP_005253350.1 2974859 D 990282 CDS YP_005253351.1 378990187 2975773..2976594 1 NC_016863.1 SitB (gi|5231095); Salmonella iron transporter; Fur-regulated; putative ATP-binding protein 2976594 sitB 990282002849 sitB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ATP-binding protein YP_005253351.1 2975773 D 990282 CDS YP_005253352.1 378990188 2976591..2977451 1 NC_016863.1 SitC (gi|5231096); Salmonella iron transporter; Fur-regulated; putative permease 2977451 sitC 990282002850 sitC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005253352.1 2976591 D 990282 CDS YP_005253353.1 378990189 2977442..2978290 1 NC_016863.1 SitD (gi|5231097); Salmonella iron transporter; Fur-regulated; putative permease 2978290 sitD 990282002851 sitD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005253353.1 2977442 D 990282 CDS YP_005253354.1 378990190 complement(2978460..2979296) 1 NC_016863.1 invasion protein; inhbits activation of key proinflammatory transcription factor NF-kappaB; secreted effector protein 2979296 avrA 990282002852 avrA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secreted effector protein YP_005253354.1 2978460 R 990282 CDS YP_005253355.1 378990191 complement(2979457..2980212) 1 NC_016863.1 transcriptional regulator SprB (gi|5007028); transcriptional regulator 2980212 sprB 990282002853 sprB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator YP_005253355.1 2979457 R 990282 CDS YP_005253356.1 378990192 complement(2980597..2981484) 1 NC_016863.1 SprA; HilC (gi|4455106); helix-turn-helix protein; AraC family; activator for invasion genes; derepresses hilA expression; invasion regulatory protein 2981484 hilC 990282002854 hilC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 invasion regulatory protein YP_005253356.1 2980597 R 990282 CDS YP_005253357.1 378990193 complement(2981829..2982281) 1 NC_016863.1 putative cytoplasmic protein 2982281 orgC 990282002855 orgC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253357.1 2981829 R 990282 CDS YP_005253358.1 378990194 complement(2982278..2982958) 1 NC_016863.1 oxygen-regulated invasion protein OrgB (SW:ORGB_SALTY); putative flagellar biosynthesis/type III secretion apparatus; needle complex export protein 2982958 orgB 990282002856 orgB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 needle complex export protein YP_005253358.1 2982278 R 990282 CDS YP_005253359.1 378990195 complement(2982915..2983514) 1 NC_016863.1 oxygen-regulated invasion protein OrgA (SW:ORGA_SALTY); putative flagellar biosynthesis/type III secretion apparatus; needle complex assembly protein 2983514 orgA 990282002857 orgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 needle complex assembly protein YP_005253359.1 2982915 R 990282 CDS YP_005253360.1 378990196 complement(2983486..2984244) 1 NC_016863.1 PrgK protein precursor (SW:PRGK_SALTY); cell invasion protein; interacts with PrgH and forms oligomeric rings; type III secretion apparatus; needle complex inner membrane lipoprotein 2984244 prgK 990282002858 prgK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 needle complex inner membrane lipoprotein YP_005253360.1 2983486 R 990282 CDS YP_005253361.1 378990197 complement(2984241..2984546) 1 NC_016863.1 PrgJ protein (SW:PRGJ_SALTY); invasion protein; may cap needle complex; type III secretion apparatus; needle complex minor subunit 2984546 prgJ 990282002859 prgJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 needle complex minor subunit YP_005253361.1 2984241 R 990282 CDS YP_005253362.1 378990198 complement(2984565..2984807) 1 NC_016863.1 PrgI protein (SW:PRGI_SALTY); invasion protein; type III secretion apparatus; needle complex major subunit 2984807 prgI 990282002860 prgI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 needle complex major subunit YP_005253362.1 2984565 R 990282 CDS YP_005253363.1 378990199 complement(2984832..2986010) 1 NC_016863.1 PrgH protein (SW:PRGH_SALTY); invasion protein; interacts with PrgK; tetarmerizes; with PrgK forms multimeric ring-shaped structures; type III secretion apparatus; needle complex inner membrane protein 2986010 prgH 990282002861 prgH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 needle complex inner membrane protein YP_005253363.1 2984832 R 990282 CDS YP_005253364.1 378990200 2986326..2987255 1 NC_016863.1 HilD (gi|4455108); helix-turn-helix proteins; AraC family; activator for invasion genes; derepresses hilA expression; invasion protein regulatory protein 2987255 hilD 990282002862 hilD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 invasion protein regulatory protein YP_005253364.1 2986326 D 990282 CDS YP_005253365.1 378990201 2988346..2990007 1 NC_016863.1 Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; invasion protein regulator 2990007 hilA 990282002863 hilA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 invasion protein regulator YP_005253365.1 2988346 D 990282 CDS YP_005253366.1 378990202 2990025..2990507 1 NC_016863.1 invasion associated gene protein IagB precursor (SW:IAGB_SALTY); invasion protein precursor 2990507 iagB 990282002864 iagB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 invasion protein precursor YP_005253366.1 2990025 D 990282 CDS YP_005253367.1 378990203 complement(2990561..2992192) 1 NC_016863.1 protein tyrosine phosphatase SptP (gi|1519054); translocated protein; type III secretion; antagonizes bacterial-encoded exchange factors SopE and SopE2 by interfering with stimulation of Cdc42 and Rac1; binds Rac1; protein tyrosine phosphatase/GTPase activating protein 2992192 sptP 990282002865 sptP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 protein tyrosine phosphatase/GTPase activating protein YP_005253367.1 2990561 R 990282 CDS YP_005253368.1 378990204 complement(2992179..2992571) 1 NC_016863.1 SicP (gi|3283218); virulence protein; chaperone for SptP; type III secretion; secretion system chaperone 2992571 sicP 990282002866 sicP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secretion system chaperone YP_005253368.1 2992179 R 990282 CDS YP_005253369.1 378990205 complement(2992598..2992858) 1 NC_016863.1 putative cytoplasmic protein 2992858 990282002867 STMUK_2869 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253369.1 2992598 R 990282 CDS YP_005253370.1 378990206 complement(2992902..2993150) 1 NC_016863.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2993150 iacP 990282002868 iacP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acyl carrier protein YP_005253370.1 2992902 R 990282 CDS YP_005253371.1 378990207 complement(2993169..2995226) 1 NC_016863.1 Salmonella invasion protein SipA (gi|1172128); binds actin and promotes polymerization; results in membrane ruffling and internalization due to cytoskeleton rearrangements; secreted effector protein 2995226 sipA 990282002869 sipA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secreted effector protein YP_005253371.1 2993169 R 990282 CDS YP_005253372.1 378990208 complement(2995245..2996276) 1 NC_016863.1 cell invasion protein SspD protein (gi|7443300); involved in translocating secreted proteins to host cells; translocon; type III secretion; translocation machinery component 2996276 sipD 990282002870 sipD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 translocation machinery component YP_005253372.1 2995245 R 990282 CDS YP_005253373.1 378990209 complement(2996347..2997576) 1 NC_016863.1 cell invasion protein SspC (gi|7443298); involved in translocating secreted proteins to host cell; translocon; type III secretion; inserted into host cell plasma membrane; interacts with SipC; translocation machinery component 2997576 sipC 990282002871 sipC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 translocation machinery component YP_005253373.1 2996347 R 990282 CDS YP_005253374.1 378990210 complement(2997604..2999385) 1 NC_016863.1 cell invasion protein SspB (gi|975295); involved in translocating secreted proteins to host cell; translocon; type III secretion; inserted into host cell plasma membrane; interacts with SipB; translocation machinery component 2999385 sipB 990282002872 sipB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 translocation machinery component YP_005253374.1 2997604 R 990282 CDS YP_005253375.1 378990211 complement(2999388..2999885) 1 NC_016863.1 surface presentation of antigens protein SpaT (SW:SPAT_SALTY); surface presentation of antigens; secretory proteins; partitioning factor for SipB/C; prevents premature association of SipB/C; regulates several promoters with InvF; secretion chaperone 2999885 sicA 990282002873 sicA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secretion chaperone YP_005253375.1 2999388 R 990282 CDS YP_005253376.1 378990212 complement(3000023..3001093) 1 NC_016863.1 Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS 3001093 spaS 990282002874 spaS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 surface presentation of antigens protein SpaS YP_005253376.1 3000023 R 990282 CDS YP_005253377.1 378990213 complement(3001080..3001871) 1 NC_016863.1 surface presentation of antigens protein SpaR (SW:SPAR_SALTY); inner membrane secretory protein; type III secretion apparatus; needle complex export protein 3001871 spaR 990282002875 spaR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 needle complex export protein YP_005253377.1 3001080 R 990282 CDS YP_005253378.1 378990214 complement(3001875..3002135) 1 NC_016863.1 surface presentation of antigens protein SpaQ (SW:SPAQ_SALTY); inner membrane secretory protein; type III secretion apparatus; needle complex export protein 3002135 spaQ 990282002876 spaQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 needle complex export protein YP_005253378.1 3001875 R 990282 CDS YP_005253379.1 378990215 complement(3002161..3002835) 1 NC_016863.1 part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP 3002835 spaP 990282002877 spaP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 surface presentation of antigens protein SpaP YP_005253379.1 3002161 R 990282 CDS YP_005253380.1 378990216 complement(3002825..3003736) 1 NC_016863.1 involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; surface presentation of antigens protein SpaO 3003736 spaO 990282002878 spaO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 surface presentation of antigens protein SpaO YP_005253380.1 3002825 R 990282 CDS YP_005253381.1 378990217 complement(3003736..3004746) 1 NC_016863.1 surface presentation of antigens protein SpaN (SW:SPAN_SALTY); surface presentation of antigens; secretory proteins; needle length control protein 3004746 invJ 990282002879 invJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 needle length control protein YP_005253381.1 3003736 R 990282 CDS YP_005253382.1 378990218 complement(3004746..3005189) 1 NC_016863.1 surface presentation of antigens protein SpaM (SW:SPAM_SALTY); secretory proteins; type III secretion apparatus; needle complex assembly protein 3005189 invI 990282002880 invI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 needle complex assembly protein YP_005253382.1 3004746 R 990282 CDS YP_005253383.1 378990219 complement(3005167..3006462) 1 NC_016863.1 Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL 3006462 invC 990282002881 invC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP synthase SpaL YP_005253383.1 3005167 R 990282 CDS YP_005253384.1 378990220 complement(3006459..3006866) 1 NC_016863.1 surface presentation of antigens protein SpaK (SW:SPAK_SALTY); secretory protein; chaperone for SopE/SopE2; type III secretion; secretion chaperone 3006866 invB 990282002882 invB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secretion chaperone YP_005253384.1 3006459 R 990282 CDS YP_005253385.1 378990221 complement(3006890..3008947) 1 NC_016863.1 invasion protein InvA (SW:INVA_SALTY); inner membrane protein; type III secretion apparatus; needle complex export protein 3008947 invA 990282002883 invA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 needle complex export protein YP_005253385.1 3006890 R 990282 CDS YP_005253386.1 378990222 complement(3008972..3010090) 1 NC_016863.1 invasion protein InvE (SW:INVE_SALTY); interacts with SecA-SipB/C complex; essential for translocation into host cells; invasion protein 3010090 invE 990282002884 invE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 invasion protein YP_005253386.1 3008972 R 990282 CDS YP_005253387.1 378990223 complement(3010087..3011775) 1 NC_016863.1 InvG protein precursor (SW:INVG_SALTY); forms ring-shaped structure in outer membrane; requires InvH for stability; type III secretion apparatus; outer membrane secretin precursor 3011775 invG 990282002885 invG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane secretin precursor YP_005253387.1 3010087 R 990282 CDS YP_005253388.1 378990224 complement(3011772..3012422) 1 NC_016863.1 invasion protein InvF (SW:INVF_SALTY); SPI-1 transcription factor; activated by HilA; requires SicA as a co-factor; controls sigD/sopB, sopE and sicAsipBCDA genes; invasion regulatory protein 3012422 invF 990282002886 invF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 invasion regulatory protein YP_005253388.1 3011772 R 990282 CDS YP_005253389.1 378990225 3012879..3013322 1 NC_016863.1 invasion protein InvH precursor (SW:INVH_SALTY); stabilizes InvG secretin; type III secretion apparatus; needle complex outer membrane lipoprotein precursor 3013322 invH 990282002887 invH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 needle complex outer membrane lipoprotein precursor YP_005253389.1 3012879 D 990282 CDS YP_005253390.1 378990226 3013753..3014202 1 NC_016863.1 putative cytoplasmic protein 3014202 990282002888 STMUK_2890 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253390.1 3013753 D 990282 CDS YP_005253391.1 378990227 3014187..3014534 1 NC_016863.1 similar to STM2011 and STM2508; putative cytoplasmic protein 3014534 990282002889 STMUK_2891 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253391.1 3014187 D 990282 CDS YP_005253392.1 378990228 complement(3014807..3015133) 1 NC_016863.1 putative cytoplasmic protein 3015133 990282002890 STMUK_2892 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253392.1 3014807 R 990282 CDS YP_005253393.1 378990229 3015822..3016112 1 NC_016863.1 putative ABC-type transporter 3016112 990282002891 STMUK_2893 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type transporter YP_005253393.1 3015822 D 990282 CDS YP_005253394.1 378990230 3016109..3016636 1 NC_016863.1 putative acetyltransferase 3016636 990282002892 STMUK_2894 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acetyltransferase YP_005253394.1 3016109 D 990282 CDS YP_005253395.1 378990231 complement(3016709..3016897) 1 NC_016863.1 putative cytoplasmic protein 3016897 990282002893 STMUK_2895 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253395.1 3016709 R 990282 CDS YP_005253396.1 378990232 3017261..3017917 1 NC_016863.1 similar to Escherichia coli protein phosphatase 2 (AAC75776.1); serine/threonine-specific protein phosphatase 2 3017917 pphB 990282002894 pphB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 serine/threonine-specific protein phosphatase 2 YP_005253396.1 3017261 D 990282 CDS YP_005253397.1 378990233 complement(3018089..3018610) 1 NC_016863.1 putative cytoplasmic protein 3018610 990282002895 STMUK_2897 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253397.1 3018089 R 990282 CDS YP_005253398.1 378990234 3018769..3021336 1 NC_016863.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3021336 mutS 990282002896 mutS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA mismatch repair protein MutS YP_005253398.1 3018769 D 990282 CDS YP_005253399.1 378990235 complement(3021392..3021772) 1 NC_016863.1 putative cytoplasmic protein 3021772 990282002897 STMUK_2899 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253399.1 3021392 R 990282 CDS YP_005253400.1 378990236 3023064..3023996 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73313.1); LysR family; putative transcriptional regulator 3023996 990282002899 STMUK_2901 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253400.1 3023064 D 990282 CDS YP_005253401.1 378990237 complement(3024038..3025534) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75782.1); putative permease 3025534 990282002900 STMUK_2902 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005253401.1 3024038 R 990282 CDS YP_005253402.1 378990238 complement(3025531..3026481) 1 NC_016863.1 similar to Escherichia coli UDP-galactose-4-epimerase (AAC73846.1); putative nucleoside-diphosphate-sugar epimerase 3026481 990282002901 STMUK_2903 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative nucleoside-diphosphate-sugar epimerase YP_005253402.1 3025531 R 990282 CDS YP_005253403.1 378990239 complement(3026521..3027297) 1 NC_016863.1 hypothetical protein 3027297 ygbM 990282002902 ygbM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253403.1 3026521 R 990282 CDS YP_005253404.1 378990240 complement(3027302..3027940) 1 NC_016863.1 similar to Escherichia coli putative epimerase/aldolase (AAC75780.1); putative aldolase 3027940 ygbL 990282002903 ygbL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative aldolase YP_005253404.1 3027302 R 990282 CDS YP_005253405.1 378990241 complement(3027937..3029199) 1 NC_016863.1 putative tRNA synthase 3029199 ygbK 990282002904 ygbK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative tRNA synthase YP_005253405.1 3027937 R 990282 CDS YP_005253406.1 378990242 complement(3029193..3030116) 1 NC_016863.1 similar to Escherichia coli putative dehydrogenase (AAC75778.1); 3-hydroxyisobutyrate dehydrogenase 3030116 ygbJ 990282002905 ygbJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-hydroxyisobutyrate dehydrogenase YP_005253406.1 3029193 R 990282 CDS YP_005253407.1 378990243 3030313..3031077 1 NC_016863.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC75777.1); DeoR family; putative regulatory protein 3031077 ygbI 990282002906 ygbI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005253407.1 3030313 D 990282 CDS YP_005253408.1 378990244 complement(3031096..3031500) 1 NC_016863.1 similar to Escherichia coli transcriptional regulator for cryptic hemolysin (AAC74714.1); putative transcriptional regulator 3031500 990282002907 STMUK_2909 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253408.1 3031096 R 990282 CDS YP_005253409.1 378990245 3031671..3032264 1 NC_016863.1 similar to Escherichia coli 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (AAC75371.1); putative flavoprotein 3032264 990282002908 STMUK_2910 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative flavoprotein YP_005253409.1 3031671 D 990282 CDS YP_005253410.1 378990246 3032264..3033691 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC76846.1); putative 3-polyprenyl-4-hydroxybenzoate decarboxylase 3033691 990282002909 STMUK_2911 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative 3-polyprenyl-4-hydroxybenzoate decarboxylase YP_005253410.1 3032264 D 990282 CDS YP_005253411.1 378990247 3033702..3033938 1 NC_016863.1 putative cytoplasmic protein 3033938 990282002910 STMUK_2912 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253411.1 3033702 D 990282 CDS YP_005253412.1 378990248 complement(3033983..3034975) 1 NC_016863.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 3034975 rpoS 990282002911 rpoS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 RNA polymerase sigma factor RpoS YP_005253412.1 3033983 R 990282 CDS YP_005253413.1 378990249 complement(3035038..3036159) 1 NC_016863.1 outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD 3036159 nlpD 990282002912 nlpD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipoprotein NlpD YP_005253413.1 3035038 R 990282 CDS YP_005253414.1 378990250 complement(3036335..3036961) 1 NC_016863.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 3036961 pcm 990282002913 pcm Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 protein-L-isoaspartate O-methyltransferase YP_005253414.1 3036335 R 990282 CDS YP_005253415.1 378990251 complement(3036955..3037716) 1 NC_016863.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 3037716 surE 990282002914 surE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 stationary phase survival protein SurE YP_005253415.1 3036955 R 990282 CDS YP_005253416.1 378990252 complement(3037697..3038746) 1 NC_016863.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 3038746 ygbO 990282002915 ygbO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA pseudouridine synthase D YP_005253416.1 3037697 R 990282 CDS YP_005253417.1 378990253 complement(3038743..3039222) 1 NC_016863.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 3039222 ispF 990282002916 ispF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_005253417.1 3038743 R 990282 CDS YP_005253418.1 378990254 complement(3039222..3039932) 1 NC_016863.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthes; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3039932 ispD 990282002917 ispD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_005253418.1 3039222 R 990282 CDS YP_005253419.1 378990255 complement(3039951..3040262) 1 NC_016863.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 3040262 ftsB 990282002918 ftsB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division protein FtsB YP_005253419.1 3039951 R 990282 CDS YP_005253420.1 378990256 complement(3040453..3040809) 1 NC_016863.1 similar to Escherichia coli putative cytochrome oxidase subunit (AAC75791.1); hypothetical protein 3040809 ygbE 990282002919 ygbE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253420.1 3040453 R 990282 CDS YP_005253421.1 378990257 complement(3040827..3041432) 1 NC_016863.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 3041432 cysC 990282002920 cysC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 adenylylsulfate kinase YP_005253421.1 3040827 R 990282 CDS YP_005253422.1 378990258 complement(3041419..3042858) 1 NC_016863.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; p; sulfate adenylyltransferase subunit 1 3042858 cysN 990282002921 cysN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sulfate adenylyltransferase subunit 1 YP_005253422.1 3041419 R 990282 CDS YP_005253423.1 378990259 complement(3042868..3043776) 1 NC_016863.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 3043776 cysD 990282002922 cysD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sulfate adenylyltransferase subunit 2 YP_005253423.1 3042868 R 990282 CDS YP_005253424.1 378990260 3044027..3045073 1 NC_016863.1 catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase isozyme conversion aminopeptidase 3045073 iap 990282002923 iap Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alkaline phosphatase isozyme conversion aminopeptidase YP_005253424.1 3044027 D 990282 CDS YP_005253425.1 378990261 complement(3046172..3046468) 1 NC_016863.1 hypothetical protein 3046468 ygbF 990282002924 ygbF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253425.1 3046172 R 990282 CDS YP_005253426.1 378990262 complement(3046465..3047385) 1 NC_016863.1 putative cytoplasmic protein 3047385 990282002925 STMUK_2927 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253426.1 3046465 R 990282 CDS YP_005253427.1 378990263 complement(3047382..3048032) 1 NC_016863.1 putative cytoplasmic protein 3048032 ygcH 990282002926 ygcH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253427.1 3047382 R 990282 CDS YP_005253428.1 378990264 complement(3048014..3048760) 1 NC_016863.1 putative cytoplasmic protein 3048760 990282002927 STMUK_2929 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253428.1 3048014 R 990282 CDS YP_005253429.1 378990265 complement(3048771..3049829) 1 NC_016863.1 putative cytoplasmic protein 3049829 yghJ 990282002928 yghJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253429.1 3048771 R 990282 CDS YP_005253430.1 378990266 complement(3049843..3050403) 1 NC_016863.1 putative transposase 3050403 990282002929 STMUK_2931 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transposase YP_005253430.1 3049843 R 990282 CDS YP_005253431.1 378990267 complement(3050400..3051956) 1 NC_016863.1 putative cytoplasmic protein 3051956 990282002930 STMUK_2932 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253431.1 3050400 R 990282 CDS YP_005253432.1 378990268 complement(3051968..3054631) 1 NC_016863.1 putative helicase 3054631 ygcB 990282002931 ygcB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative helicase YP_005253432.1 3051968 R 990282 CDS YP_005253433.1 378990269 3055076..3056029 1 NC_016863.1 hypothetical 36.1 kDa protein in cysH 3'region (ORF4) (SW:YGCC_SALTY); secreted by SPI-1; type III secretion; secreted effector protein 3056029 sopD 990282002932 sopD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 secreted effector protein YP_005253433.1 3055076 D 990282 CDS YP_005253434.1 378990270 complement(3056117..3056851) 1 NC_016863.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 3056851 cysH 990282002933 cysH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoadenosine phosphosulfate reductase YP_005253434.1 3056117 R 990282 CDS YP_005253435.1 378990271 complement(3056927..3058639) 1 NC_016863.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 3058639 cysI 990282002934 cysI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sulfite reductase subunit beta YP_005253435.1 3056927 R 990282 CDS YP_005253436.1 378990272 complement(3058639..3060438) 1 NC_016863.1 catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha 3060438 cysJ 990282002935 cysJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sulfite reductase subunit alpha YP_005253436.1 3058639 R 990282 CDS YP_005253437.1 378990273 3060862..3061224 1 NC_016863.1 similar to Escherichia coli putative 6-pyruvoyl tetrahydrobiopterin synthase (AAC75807.1); putative 6-pyruvoyl tetrahydrobiopterin synthase 3061224 ptpS 990282002936 ptpS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative 6-pyruvoyl tetrahydrobiopterin synthase YP_005253437.1 3060862 D 990282 CDS YP_005253438.1 378990274 complement(3061312..3062109) 1 NC_016863.1 beta-lactamase superfamily II; putative metal-dependent hydrolase 3062109 990282002937 STMUK_2939 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative metal-dependent hydrolase YP_005253438.1 3061312 R 990282 CDS YP_005253439.1 378990275 complement(3063936..3064607) 1 NC_016863.1 putative organic radical activating enzymes; hypothetical protein 3064607 ygcF 990282002938 ygcF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253439.1 3063936 R 990282 CDS YP_005253440.1 378990276 complement(3064743..3066041) 1 NC_016863.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3066041 eno 990282002939 eno Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphopyruvate hydratase YP_005253440.1 3064743 R 990282 CDS YP_005253441.1 378990277 complement(3066124..3067761) 1 NC_016863.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 3067761 pyrG 990282002940 pyrG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 CTP synthetase YP_005253441.1 3066124 R 990282 CDS YP_005253442.1 378990278 complement(3067989..3068789) 1 NC_016863.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus; nucleoside triphosphate pyrophosphohydrolase 3068789 mazG 990282002941 mazG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nucleoside triphosphate pyrophosphohydrolase YP_005253442.1 3067989 R 990282 CDS YP_005253443.1 378990279 complement(3069819..3070175) 1 NC_016863.1 contains CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; putative transcriptional regulator 3070175 990282002942 STMUK_2944 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253443.1 3069819 R 990282 CDS YP_005253444.1 378990280 complement(3070259..3072493) 1 NC_016863.1 (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase 3072493 relA 990282002943 relA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GDP/GTP pyrophosphokinase YP_005253444.1 3070259 R 990282 CDS YP_005253445.1 378990281 complement(3072545..3073840) 1 NC_016863.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 3073840 rumA 990282002944 rumA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 23S rRNA 5-methyluridine methyltransferase YP_005253445.1 3072545 R 990282 CDS YP_005253446.1 378990282 3073898..3076654 1 NC_016863.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3076654 barA 990282002945 barA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hybrid sensory histidine kinase BarA YP_005253446.1 3073898 D 990282 CDS YP_005253447.1 378990283 complement(3076698..3077840) 1 NC_016863.1 putative glycerate kinase 2 3077840 990282002946 STMUK_2948 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycerate kinase 2 YP_005253447.1 3076698 R 990282 CDS YP_005253448.1 378990284 complement(3077918..3079258) 1 NC_016863.1 similar to Escherichia coli putative glucarate dehydratase (AAC75829.1); d-glucarate dehydratase 3079258 gudD 990282002947 gudD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 d-glucarate dehydratase YP_005253448.1 3077918 R 990282 CDS YP_005253449.1 378990285 complement(3079279..3080619) 1 NC_016863.1 similar to Escherichia coli putative glucarate dehydratase (AAC75830.1); putative D-glucarate dehydratase 3080619 ygcY 990282002948 ygcY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative D-glucarate dehydratase YP_005253449.1 3079279 R 990282 CDS YP_005253450.1 378990286 complement(3080616..3081974) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75831.1); MFS family; putative D-glucarate permease 3081974 gudT 990282002949 gudT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative D-glucarate permease YP_005253450.1 3080616 R 990282 CDS YP_005253451.1 378990287 complement(3082455..3082904) 1 NC_016863.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 3082904 990282002950 STMUK_2952 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flavodoxin YP_005253451.1 3082455 R 990282 CDS YP_005253452.1 378990288 complement(3082923..3083705) 1 NC_016863.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 3083705 yqcB 990282002951 yqcB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA pseudouridine synthase C YP_005253452.1 3082923 R 990282 CDS YP_005253453.1 378990289 complement(3083705..3084034) 1 NC_016863.1 putative cytoplasmic protein 3084034 yqcC 990282002952 yqcC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253453.1 3083705 R 990282 CDS YP_005253454.1 378990290 complement(3084646..3085191) 1 NC_016863.1 putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 3085191 syd 990282002953 syd Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 SecY interacting protein Syd YP_005253454.1 3084646 R 990282 CDS YP_005253455.1 378990291 3085260..3086108 1 NC_016863.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3086108 queF 990282002954 queF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 7-cyano-7-deazaguanine reductase YP_005253455.1 3085260 D 990282 CDS YP_005253456.1 378990292 3086221..3087585 1 NC_016863.1 putative nucleotide binding protein 3087585 ygdH 990282002955 ygdH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative nucleotide binding protein YP_005253456.1 3086221 D 990282 CDS YP_005253457.1 378990293 3088150..3089439 1 NC_016863.1 similar to Escherichia coli probable serine transporter (AAC75838.1); HAAAP family; putative serine transport protein 3089439 sdaC 990282002956 sdaC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative serine transport protein YP_005253457.1 3088150 D 990282 CDS YP_005253458.1 378990294 3089498..3090865 1 NC_016863.1 similar to Escherichia coli L-serine dehydratase; deaminase; L-SD2 (AAC75839.1); L-serine dehydratase/L-threonine deaminase 2 3090865 sdaB 990282002957 sdaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-serine dehydratase/L-threonine deaminase 2 YP_005253458.1 3089498 D 990282 CDS YP_005253459.1 378990295 3090976..3091791 1 NC_016863.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3091791 exo 990282002958 exo Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exonuclease IX YP_005253459.1 3090976 D 990282 CDS YP_005253460.1 378990296 complement(3091883..3093031) 1 NC_016863.1 similar to Escherichia coli L-1,2-propanediol oxidoreductase (AAC75841.1); L-1,2-propanediol oxidoreductase 3093031 fucO 990282002959 fucO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-1,2-propanediol oxidoreductase YP_005253460.1 3091883 R 990282 CDS YP_005253461.1 378990297 complement(3093048..3093695) 1 NC_016863.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase 3093695 fucA 990282002960 fucA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-fuculose phosphate aldolase YP_005253461.1 3093048 R 990282 CDS YP_005253462.1 378990298 3094289..3095566 1 NC_016863.1 similar to L-fucose:H+ symporter permease (Pid: YP_002115928.1).; hypothetical protein 3095566 990282002961 STMUK_2963 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253462.1 3094289 D 990282 CDS YP_005253463.1 378990299 3095598..3097373 1 NC_016863.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3097373 fucI 990282002962 fucI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-fucose isomerase YP_005253463.1 3095598 D 990282 CDS YP_005253464.1 378990300 3097474..3098892 1 NC_016863.1 similar to Escherichia coli L-fuculokinase (AAC75845.1); L-fuculokinase 3098892 fucK 990282002963 fucK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-fuculokinase YP_005253464.1 3097474 D 990282 CDS YP_005253465.1 378990301 3098894..3099316 1 NC_016863.1 similar to Escherichia coli protein of fucose operon (AAC75846.1); putative L-fucose-binding protein 3099316 fucU 990282002964 fucU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative L-fucose-binding protein YP_005253465.1 3098894 D 990282 CDS YP_005253466.1 378990302 3099374..3100084 1 NC_016863.1 regulates expression of genes involved in L-fucose utilization; DNA-binding transcriptional activator FucR 3100084 fucR 990282002965 fucR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator FucR YP_005253466.1 3099374 D 990282 CDS YP_005253467.1 378990303 complement(3100143..3101243) 1 NC_016863.1 putative RNA 2'-O-ribose methyltransferase 3101243 ygdE 990282002966 ygdE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative RNA 2'-O-ribose methyltransferase YP_005253467.1 3100143 R 990282 CDS YP_005253468.1 378990304 complement(3101236..3101631) 1 NC_016863.1 hypothetical protein 3101631 ygdD 990282002967 ygdD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253468.1 3101236 R 990282 CDS YP_005253469.1 378990305 complement(3101650..3102567) 1 NC_016863.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3102567 gcvA 990282002968 gcvA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator GcvA YP_005253469.1 3101650 R 990282 CDS YP_005253470.1 378990306 complement(3102914..3103141) 1 NC_016863.1 putative lipoprotein 3103141 ygdI 990282002969 ygdI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative lipoprotein YP_005253470.1 3102914 R 990282 CDS YP_005253471.1 378990307 3103334..3104539 1 NC_016863.1 cysteine sulfinate desulfinase 3104539 csdA 990282002970 csdA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cysteine sulfinate desulfinase YP_005253471.1 3103334 D 990282 CDS YP_005253472.1 378990308 3104539..3104982 1 NC_016863.1 similar to SufE; putative FeS center assembly protein 3104982 ygdK 990282002971 ygdK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative FeS center assembly protein YP_005253472.1 3104539 D 990282 CDS YP_005253473.1 378990309 3105282..3106169 1 NC_016863.1 hypothetical protein 3106169 990282002972 STMUK_2974 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253473.1 3105282 D 990282 CDS YP_005253474.1 378990310 complement(3106221..3107027) 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC75854.1); hypothetical protein 3107027 ygdL 990282002973 ygdL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253474.1 3106221 R 990282 CDS YP_005253475.1 378990311 complement(3107137..3108234) 1 NC_016863.1 membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 3108234 mltA 990282002974 mltA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 murein transglycosylase A YP_005253475.1 3107137 R 990282 CDS YP_005253476.1 378990312 complement(3108734..3109987) 1 NC_016863.1 similar to Escherichia coli putative amidase (AAC75856.1); N-acetylmuramoyl-L-alanine amidase 3109987 amiC 990282002977 amiC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-acetylmuramoyl-L-alanine amidase YP_005253476.1 3108734 R 990282 CDS YP_005253477.1 378990313 3110220..3111551 1 NC_016863.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3111551 argA 990282002978 argA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-acetylglutamate synthase YP_005253477.1 3110220 D 990282 CDS YP_005253478.1 378990314 complement(3111654..3113489) 1 NC_016863.1 helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha 3113489 recD 990282002979 recD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exonuclease V subunit alpha YP_005253478.1 3111654 R 990282 CDS YP_005253479.1 378990315 complement(3113486..3117031) 1 NC_016863.1 helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta 3117031 recB 990282002980 recB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exonuclease V subunit beta YP_005253479.1 3113486 R 990282 CDS YP_005253480.1 378990316 complement(3117024..3119912) 1 NC_016863.1 similar to Escherichia coli protease III (AAC75860.1); protease III 3119912 ptr 990282002981 ptr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 protease III YP_005253480.1 3117024 R 990282 CDS YP_005253481.1 378990317 complement(3120090..3123461) 1 NC_016863.1 catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma 3123461 recC 990282002982 recC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exonuclease V subunit gamma YP_005253481.1 3120090 R 990282 CDS YP_005253482.1 378990318 complement(3123477..3123797) 1 NC_016863.1 similar to Escherichia coli prepilin peptidase dependent protein C (AAC75862.1); putative component involved type IV pilin biogenesis; hypothetical protein 3123797 ppdC 990282002983 ppdC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253482.1 3123477 R 990282 CDS YP_005253483.1 378990319 complement(3123782..3124189) 1 NC_016863.1 hypothetical protein 3124189 ygdB 990282002984 ygdB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253483.1 3123782 R 990282 CDS YP_005253484.1 378990320 complement(3124186..3124749) 1 NC_016863.1 similar to Escherichia coli prepilin peptidase dependent protein B (AAC75864.1); putative component involved in type IV pilin biogenesis; hypothetical protein 3124749 ppdB 990282002985 ppdB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253484.1 3124186 R 990282 CDS YP_005253485.1 378990321 complement(3124740..3125210) 1 NC_016863.1 similar to Escherichia coli prepilin peptidase dependent protein A (AAC75865.1); putative component innvolved in type IV pilin biogenesis; hypothetical protein 3125210 ppdA 990282002986 ppdA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253485.1 3124740 R 990282 CDS YP_005253486.1 378990322 complement(3125395..3126189) 1 NC_016863.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 3126189 thyA 990282002987 thyA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thymidylate synthase YP_005253486.1 3125395 R 990282 CDS YP_005253487.1 378990323 complement(3126196..3127071) 1 NC_016863.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3127071 lgt 990282002988 lgt Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 prolipoprotein diacylglyceryl transferase YP_005253487.1 3126196 R 990282 CDS YP_005253488.1 378990324 complement(3127287..3129533) 1 NC_016863.1 member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein 3129533 ptsP 990282002989 ptsP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein YP_005253488.1 3127287 R 990282 CDS YP_005253489.1 378990325 complement(3129546..3130076) 1 NC_016863.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 3130076 ygdP 990282002990 ygdP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dinucleoside polyphosphate hydrolase YP_005253489.1 3129546 R 990282 CDS YP_005253490.1 378990326 3130759..3131454 1 NC_016863.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3131454 mutH 990282002991 mutH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA mismatch repair protein YP_005253490.1 3130759 D 990282 CDS YP_005253491.1 378990327 3131636..3132349 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75871.1); integral membrane protein; putative transport protein 3132349 ygdQ 990282002992 ygdQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005253491.1 3131636 D 990282 CDS YP_005253492.1 378990328 3132519..3132737 1 NC_016863.1 POT family; putative peptide transport protein 3132737 ygdR 990282002993 ygdR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative peptide transport protein YP_005253492.1 3132519 D 990282 CDS YP_005253493.1 378990329 3132928..3133968 1 NC_016863.1 complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; putative aldo-keto reductase 3133968 tas 990282002994 tas Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative aldo-keto reductase YP_005253493.1 3132928 D 990282 CDS YP_005253494.1 378990330 complement(3134055..3135257) 1 NC_016863.1 similar to Escherichia coli putative resistance protein (AAC75874.1); lysophospholipid transporter LplT 3135257 ygeD 990282002995 ygeD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lysophospholipid transporter LplT YP_005253494.1 3134055 R 990282 CDS YP_005253495.1 378990331 complement(3135250..3137409) 1 NC_016863.1 Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by t; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase 3137409 aas 990282002996 aas Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase YP_005253495.1 3135250 R 990282 CDS YP_005253496.1 378990332 3138002..3139030 1 NC_016863.1 controls transcription of galETKM; DNA-binding transcriptional regulator GalR 3139030 galR 990282002997 galR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator GalR YP_005253496.1 3138002 D 990282 CDS YP_005253497.1 378990333 3139041..3140063 1 NC_016863.1 similar to Escherichia coli ascBF operon repressor (AAC75756.1); putative transcriptional regulator 3140063 990282002998 STMUK_3000 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253497.1 3139041 D 990282 CDS YP_005253498.1 378990334 complement(3140073..3141335) 1 NC_016863.1 catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 3141335 lysA 990282002999 lysA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 diaminopimelate decarboxylase YP_005253498.1 3140073 R 990282 CDS YP_005253499.1 378990335 3141453..3142388 1 NC_016863.1 activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR 3142388 lysR 990282003000 lysR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator LysR YP_005253499.1 3141453 D 990282 CDS YP_005253500.1 378990336 complement(3142360..3143067) 1 NC_016863.1 similar to Escherichia coli putative resistance proteins (AAC75879.1); putative racemase 3143067 ygeA 990282003001 ygeA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative racemase YP_005253500.1 3142360 R 990282 CDS YP_005253501.1 378990337 complement(3143180..3144598) 1 NC_016863.1 similar to Escherichia coli low-affinity L-arabinose transport system proton symport protein (AAC75880.1); MFS family; L-arabinose/proton symport protein 3144598 araE 990282003002 araE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-arabinose/proton symport protein YP_005253501.1 3143180 R 990282 CDS YP_005253502.1 378990338 complement(3144952..3145713) 1 NC_016863.1 catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase 3145713 kduD 990282003003 kduD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-deoxy-D-gluconate 3-dehydrogenase YP_005253502.1 3144952 R 990282 CDS YP_005253503.1 378990339 complement(3145770..3146606) 1 NC_016863.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 3146606 kduI 990282003004 kduI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 5-keto-4-deoxyuronate isomerase YP_005253503.1 3145770 R 990282 CDS YP_005253504.1 378990340 complement(3147036..3148214) 1 NC_016863.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and; acetyl-CoA acetyltransferase 3148214 yqeF 990282003005 yqeF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetyl-CoA acetyltransferase YP_005253504.1 3147036 R 990282 CDS YP_005253505.1 378990341 complement(3148337..3149200) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73606.1); LysR family; putative transcriptional regulator 3149200 990282003006 STMUK_3008 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253505.1 3148337 R 990282 CDS YP_005253506.1 378990342 3149277..3149759 1 NC_016863.1 putative inner membrane protein 3149759 990282003007 STMUK_3009 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253506.1 3149277 D 990282 CDS YP_005253507.1 378990343 3149901..3151130 1 NC_016863.1 similar to Escherichia coli putative transporter protein (AAC75884.1); putative transport protein 3151130 990282003008 STMUK_3010 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005253507.1 3149901 D 990282 CDS YP_005253508.1 378990344 complement(3151161..3151433) 1 NC_016863.1 putative cytoplasmic protein 3151433 yohL 990282003009 yohL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253508.1 3151161 R 990282 CDS YP_005253509.1 378990345 3151555..3152499 1 NC_016863.1 membrane protein conferring nickel and cobalt resistance; nickel/cobalt efflux protein RcnA 3152499 yohM 990282003010 yohM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nickel/cobalt efflux protein RcnA YP_005253509.1 3151555 D 990282 CDS YP_005253510.1 378990346 complement(3152709..3153467) 1 NC_016863.1 similar to transcriptional regulator SprB (gi|5007028); putative cytoplasmic protein 3153467 990282003011 STMUK_3013 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253510.1 3152709 R 990282 CDS YP_005253511.1 378990347 complement(3153454..3153966) 1 NC_016863.1 similar to hypothetical protein STM3025.1N (Pid: NP_945169.1).; hypothetical protein 3153966 990282003012 STMUK_3014 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253511.1 3153454 R 990282 CDS YP_005253512.1 378990348 complement(3154110..3155186) 1 NC_016863.1 putative outer membrane protein 3155186 990282003013 STMUK_3015 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005253512.1 3154110 R 990282 CDS YP_005253513.1 378990349 complement(3155183..3155926) 1 NC_016863.1 similar to Escherichia coli putative chaperone (AAC73811.1); putative fimbrial chaperone 3155926 stdC 990282003014 stdC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial chaperone YP_005253513.1 3155183 R 990282 CDS YP_005253514.1 378990350 complement(3155967..3158456) 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC76082.1); putative outer membrane usher protein 3158456 stdB 990282003015 stdB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane usher protein YP_005253514.1 3155967 R 990282 CDS YP_005253515.1 378990351 complement(3158576..3159286) 1 NC_016863.1 similar to Escherichia coli putative fimbrial-like protein (AAC73813.1); putative fimbrial-like protein 3159286 stdA 990282003016 stdA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial-like protein YP_005253515.1 3158576 R 990282 CDS YP_005253516.1 378990352 complement(3159879..3160511) 1 NC_016863.1 hypothetical protein 3160511 990282003017 STMUK_3019 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253516.1 3159879 R 990282 CDS YP_005253517.1 378990353 complement(3160558..3161094) 1 NC_016863.1 similar to Escherichia coli outer membrane protein X (AAC73901.1); Ail/OmpX-like protein 3161094 990282003018 STMUK_3020 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Ail/OmpX-like protein YP_005253517.1 3160558 R 990282 CDS YP_005253518.1 378990354 complement(3161900..3162298) 1 NC_016863.1 stability determinant protein; plasmid maintenance protein 3162298 990282003019 STMUK_3021 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 plasmid maintenance protein YP_005253518.1 3161900 R 990282 CDS YP_005253519.1 378990355 complement(3162298..3162525) 1 NC_016863.1 putative cytoplasmic protein 3162525 990282003020 STMUK_3022 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253519.1 3162298 R 990282 CDS YP_005253520.1 378990356 3162702..3162953 1 NC_016863.1 hypothetical protein 3162953 990282003021 STMUK_3023 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253520.1 3162702 D 990282 CDS YP_005253521.1 378990357 3163228..3164034 1 NC_016863.1 putative inner membrane protein 3164034 990282003022 STMUK_3024 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253521.1 3163228 D 990282 CDS YP_005253522.1 378990358 complement(3164319..3165077) 1 NC_016863.1 similar to Escherichia coli putative lipoprotein (AAC75903.1); putative metalloendopeptidase 3165077 990282003024 STMUK_3026 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative metalloendopeptidase YP_005253522.1 3164319 R 990282 CDS YP_005253523.1 378990359 3165342..3165887 1 NC_016863.1 catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 3165887 idi 990282003025 idi Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 isopentenyl-diphosphate delta-isomerase YP_005253523.1 3165342 D 990282 CDS YP_005253524.1 378990360 complement(3165963..3167480) 1 NC_016863.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA; lysyl-tRNA synthetase 3167480 lysS 990282003026 lysS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lysyl-tRNA synthetase YP_005253524.1 3165963 R 990282 CDS YP_005253525.1 378990361 complement(3167490..3168371) 1 NC_016863.1 peptide chain release factor 2; RF-2 (SW:RF2_SALTY); peptide chain release factor 2 3168371 prfB 990282003027 prfB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptide chain release factor 2 YP_005253525.1 3167490 R 990282 CDS YP_005253526.1 378990362 complement(3168693..3170426) 1 NC_016863.1 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ 3170426 recJ 990282003028 recJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ssDNA exonuclease RecJ YP_005253526.1 3168693 R 990282 CDS YP_005253527.1 378990363 complement(3170432..3171145) 1 NC_016863.1 DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC 3171145 dsbC 990282003029 dsbC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiol:disulfide interchange protein DsbC YP_005253527.1 3170432 R 990282 CDS YP_005253528.1 378990364 complement(3171169..3172065) 1 NC_016863.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d; site-specific tyrosine recombinase XerD 3172065 xerD 990282003030 xerD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 site-specific tyrosine recombinase XerD YP_005253528.1 3171169 R 990282 CDS YP_005253529.1 378990365 3172178..3172699 1 NC_016863.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB 3172699 fldB 990282003031 fldB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flavodoxin FldB YP_005253529.1 3172178 D 990282 CDS YP_005253530.1 378990366 complement(3172752..3173165) 1 NC_016863.1 putative inner membrane protein 3173165 ygfX 990282003032 ygfX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253530.1 3172752 R 990282 CDS YP_005253531.1 378990367 complement(3173146..3173412) 1 NC_016863.1 hypothetical protein 3173412 ygfY 990282003033 ygfY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253531.1 3173146 R 990282 CDS YP_005253532.1 378990368 3173662..3174642 1 NC_016863.1 physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and t; putative global regulator 3174642 ygfZ 990282003034 ygfZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative global regulator YP_005253532.1 3173662 D 990282 CDS YP_005253533.1 378990369 complement(3174758..3175417) 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC75937.1); putative hemolysin 3175417 yqfA 990282003035 yqfA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hemolysin YP_005253533.1 3174758 R 990282 CDS YP_005253534.1 378990370 complement(3175581..3175892) 1 NC_016863.1 hypothetical protein 3175892 yqfB 990282003036 yqfB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253534.1 3175581 R 990282 CDS YP_005253535.1 378990371 3176051..3177484 1 NC_016863.1 similar to Escherichia coli 6-phospho-beta-glucosidase A; cryptic (AAC75939.1); 6-phospho-beta-glucosidase 3177484 bglA 990282003037 bglA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 6-phospho-beta-glucosidase YP_005253535.1 3176051 D 990282 CDS YP_005253536.1 378990372 complement(3177532..3178425) 1 NC_016863.1 putative outer membrane protein 3178425 990282003038 STMUK_3040 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005253536.1 3177532 R 990282 CDS YP_005253537.1 378990373 complement(3178881..3181754) 1 NC_016863.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3181754 gcvP 990282003039 gcvP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycine dehydrogenase YP_005253537.1 3178881 R 990282 CDS YP_005253538.1 378990374 complement(3181917..3182306) 1 NC_016863.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P t; glycine cleavage system protein H 3182306 gcvH 990282003040 gcvH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycine cleavage system protein H YP_005253538.1 3181917 R 990282 CDS YP_005253539.1 378990375 complement(3182332..3183426) 1 NC_016863.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 3183426 gcvT 990282003041 gcvT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycine cleavage system aminomethyltransferase T YP_005253539.1 3182332 R 990282 CDS YP_005253540.1 378990376 complement(3183881..3185083) 1 NC_016863.1 hypothetical protein 3185083 visC 990282003042 visC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253540.1 3183881 R 990282 CDS YP_005253541.1 378990377 complement(3185209..3186387) 1 NC_016863.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 3186387 ubiH 990282003043 ubiH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-octaprenyl-6-methoxyphenyl hydroxylase YP_005253541.1 3185209 R 990282 CDS YP_005253542.1 378990378 complement(3186384..3187700) 1 NC_016863.1 exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II 3187700 pepP 990282003044 pepP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 proline aminopeptidase P II YP_005253542.1 3186384 R 990282 CDS YP_005253543.1 378990379 complement(3187726..3188310) 1 NC_016863.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 3188310 ygfB 990282003045 ygfB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253543.1 3187726 R 990282 CDS YP_005253544.1 378990380 3188471..3188800 1 NC_016863.1 Z-ring-associated protein 3188800 ygfE 990282003046 ygfE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Z-ring-associated protein YP_005253544.1 3188471 D 990282 CDS YP_005253545.1 378990381 3189094..3189642 1 NC_016863.1 ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; putative ligase 3189642 ygfA 990282003047 ygfA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ligase YP_005253545.1 3189094 D 990282 CDS YP_005253546.1 378990382 complement(3190023..3191255) 1 NC_016863.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3191255 serA 990282003048 serA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-3-phosphoglycerate dehydrogenase YP_005253546.1 3190023 R 990282 CDS YP_005253547.1 378990383 complement(3191521..3192180) 1 NC_016863.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 3192180 rpiA 990282003049 rpiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribose-5-phosphate isomerase A YP_005253547.1 3191521 R 990282 CDS YP_005253548.1 378990384 3192334..3193227 1 NC_016863.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3193227 iciA 990282003050 iciA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chromosome replication initiation inhibitor protein YP_005253548.1 3192334 D 990282 CDS YP_005253549.1 378990385 complement(3193493..3194239) 1 NC_016863.1 putative periplasmic immunogenic protein; hypothetical protein 3194239 yggE 990282003051 yggE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253549.1 3193493 R 990282 CDS YP_005253550.1 378990386 complement(3194333..3194968) 1 NC_016863.1 Involved in the export of arginine; arginine exporter protein 3194968 yggA 990282003052 yggA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 arginine exporter protein YP_005253550.1 3194333 R 990282 CDS YP_005253551.1 378990387 complement(3195168..3196028) 1 NC_016863.1 participates in the regulation of osmotic pressure changes within the cel; mechanosensitive channel MscS 3196028 yggB 990282003053 yggB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 mechanosensitive channel MscS YP_005253551.1 3195168 R 990282 CDS YP_005253552.1 378990388 complement(3196255..3197334) 1 NC_016863.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 3197334 fba 990282003054 fba Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fructose-bisphosphate aldolase YP_005253552.1 3196255 R 990282 CDS YP_005253553.1 378990389 complement(3197436..3198599) 1 NC_016863.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3198599 pgk 990282003055 pgk Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoglycerate kinase YP_005253553.1 3197436 R 990282 CDS YP_005253554.1 378990390 complement(3198621..3199667) 1 NC_016863.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 3199667 epd 990282003056 epd Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 erythrose 4-phosphate dehydrogenase YP_005253554.1 3198621 R 990282 CDS YP_005253555.1 378990391 3200041..3200466 1 NC_016863.1 putative DNA-binding protein 3200466 990282003057 STMUK_3059 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA-binding protein YP_005253555.1 3200041 D 990282 CDS YP_005253556.1 378990392 3200492..3201070 1 NC_016863.1 putative inner membrane protein 3201070 990282003058 STMUK_3060 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253556.1 3200492 D 990282 CDS YP_005253557.1 378990393 3201071..3201778 1 NC_016863.1 CbiQ and related transporter; putative ABC-type cobalt transport system permease component 3201778 990282003059 STMUK_3061 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type cobalt transport system permease component YP_005253557.1 3201071 D 990282 CDS YP_005253558.1 378990394 3201766..3202443 1 NC_016863.1 similar to Escherichia coli ATP-binding component of putrescine transport system (AAC73942.1); putative ABC-type cobalt transport system ATP-binding component 3202443 990282003060 STMUK_3062 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type cobalt transport system ATP-binding component YP_005253558.1 3201766 D 990282 CDS YP_005253559.1 378990395 3202437..3203093 1 NC_016863.1 similar to Escherichia coli ATP-binding component of sulfate permease A protein; chromate resistance (AAC75475.1); putative ABC-type cobalt transport system ATP-binding component 3203093 990282003061 STMUK_3063 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type cobalt transport system ATP-binding component YP_005253559.1 3202437 D 990282 CDS YP_005253560.1 378990396 complement(3203137..3205128) 1 NC_016863.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during expo; transketolase 3205128 tktA 990282003062 tktA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transketolase YP_005253560.1 3203137 R 990282 CDS YP_005253561.1 378990397 3205404..3206162 1 NC_016863.1 contains putative chaperone function; putative Zn-dependent protease 3206162 yggG 990282003063 yggG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative Zn-dependent protease YP_005253561.1 3205404 D 990282 CDS YP_005253562.1 378990398 complement(3206263..3207183) 1 NC_016863.1 catalyzes the formation of putrescine from agmatine; agmatinase 3207183 speB 990282003064 speB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 agmatinase YP_005253562.1 3206263 R 990282 CDS YP_005253563.1 378990399 complement(3207388..3208344) 1 NC_016863.1 putative hydrolase/acyltransferase 3208344 990282003065 STMUK_3067 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase/acyltransferase YP_005253563.1 3207388 R 990282 CDS YP_005253564.1 378990400 complement(3208558..3209031) 1 NC_016863.1 putative mannitol dehydrogenase 3209031 990282003066 STMUK_3068 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative mannitol dehydrogenase YP_005253564.1 3208558 R 990282 CDS YP_005253565.1 378990401 complement(3209070..3210077) 1 NC_016863.1 similar to Escherichia coli putative malate dehydrogenase (AAC73619.1); putative malate/L-lactate dehydrogenase 3210077 990282003067 STMUK_3069 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative malate/L-lactate dehydrogenase YP_005253565.1 3209070 R 990282 CDS YP_005253566.1 378990402 complement(3210091..3211107) 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC77314.1); putative zinc-binding dehydrogenase 3211107 990282003068 STMUK_3070 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative zinc-binding dehydrogenase YP_005253566.1 3210091 R 990282 CDS YP_005253567.1 378990403 complement(3211110..3212582) 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC75233.1); putative mannitol dehydrogenase 3212582 990282003069 STMUK_3071 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative mannitol dehydrogenase YP_005253567.1 3211110 R 990282 CDS YP_005253568.1 378990404 complement(3213824..3214624) 1 NC_016863.1 similar to Escherichia coli regulator for uxu operon (AAC77280.1); GntR family; putative regulatory protein 3214624 990282003070 STMUK_3072 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005253568.1 3213824 R 990282 CDS YP_005253569.1 378990405 complement(3214778..3215509) 1 NC_016863.1 putative outer membrane lipoprotein 3215509 990282003071 STMUK_3073 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005253569.1 3214778 R 990282 CDS YP_005253570.1 378990406 complement(3215653..3217629) 1 NC_016863.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 3217629 speA 990282003072 speA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 arginine decarboxylase YP_005253570.1 3215653 R 990282 CDS YP_005253571.1 378990407 complement(3217638..3217769) 1 NC_016863.1 putative inner membrane protein 3217769 yqgB 990282003073 yqgB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253571.1 3217638 R 990282 CDS YP_005253572.1 378990408 3217903..3218067 1 NC_016863.1 similar to E. coli orf, hypothetical protein(AAC75977.1); Blastp hit to AAC75977.1 (71 aa); putative cytoplasmic protein 3218067 990282003074 STMUK_3076 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253572.1 3217903 D 990282 CDS YP_005253573.1 378990409 complement(3218064..3218363) 1 NC_016863.1 putative inner membrane protein 3218363 yqgD 990282003075 yqgD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253573.1 3218064 R 990282 CDS YP_005253574.1 378990410 3218419..3219573 1 NC_016863.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3219573 metK 990282003076 metK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 S-adenosylmethionine synthetase YP_005253574.1 3218419 D 990282 CDS YP_005253575.1 378990411 3220066..3221460 1 NC_016863.1 similar to Escherichia coli galactose-proton symport of transport system (AAC75980.1); MFS family; galactose/proton symporter 3221460 galP 990282003077 galP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 galactose/proton symporter YP_005253575.1 3220066 D 990282 CDS YP_005253576.1 378990412 3221539..3222036 1 NC_016863.1 hypothetical protein 3222036 sprT 990282003078 sprT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253576.1 3221539 D 990282 CDS YP_005253577.1 378990413 3222131..3222838 1 NC_016863.1 similar to Escherichia coli DNA-specific endonuclease I (AAC75982.1); DNA-specific endonuclease I 3222838 endA 990282003079 endA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-specific endonuclease I YP_005253577.1 3222131 D 990282 CDS YP_005253578.1 378990414 3222867..3223646 1 NC_016863.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3223646 yggJ 990282003080 yggJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 16S ribosomal RNA methyltransferase RsmE YP_005253578.1 3222867 D 990282 CDS YP_005253579.1 378990415 3223666..3224613 1 NC_016863.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3224613 gshB 990282003081 gshB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutathione synthetase YP_005253579.1 3223666 D 990282 CDS YP_005253580.1 378990416 3224829..3225392 1 NC_016863.1 hypothetical protein 3225392 yqgE 990282003082 yqgE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253580.1 3224829 D 990282 CDS YP_005253581.1 378990417 3225392..3225808 1 NC_016863.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3225808 yqgF 990282003083 yqgF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Holliday junction resolvase-like protein YP_005253581.1 3225392 D 990282 CDS YP_005253582.1 378990418 complement(3225855..3226541) 1 NC_016863.1 putative transcriptional regulator 3226541 990282003084 STMUK_3086 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253582.1 3225855 R 990282 CDS YP_005253583.1 378990419 complement(3226673..3227653) 1 NC_016863.1 similar to Escherichia coli putative protein transport (AAC75987.1); may be involved in type II secretion; twitching motility protein 3227653 yggR 990282003085 yggR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 twitching motility protein YP_005253583.1 3226673 R 990282 CDS YP_005253584.1 378990420 3227671..3228375 1 NC_016863.1 putative enzyme with a TIM-barrel fold; hypothetical protein 3228375 yggS 990282003086 yggS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253584.1 3227671 D 990282 CDS YP_005253585.1 378990421 3228394..3228960 1 NC_016863.1 similar to Escherichia coli putative resistance protein (AAC75989.1); hypothetical protein 3228960 yggT 990282003087 yggT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253585.1 3228394 D 990282 CDS YP_005253586.1 378990422 3228957..3229247 1 NC_016863.1 hypothetical protein 3229247 yggU 990282003088 yggU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253586.1 3228957 D 990282 CDS YP_005253587.1 378990423 3229255..3229848 1 NC_016863.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 3229848 yggV 990282003089 yggV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative deoxyribonucleotide triphosphate pyrophosphatase YP_005253587.1 3229255 D 990282 CDS YP_005253588.1 378990424 3229841..3230977 1 NC_016863.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3230977 yggW 990282003090 yggW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 coproporphyrinogen III oxidase YP_005253588.1 3229841 D 990282 CDS YP_005253589.1 378990425 complement(3231068..3232075) 1 NC_016863.1 similar to Escherichia coli putative alpha helix chain (AAC75993.1); hypothetical protein 3232075 yggM 990282003091 yggM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253589.1 3231068 R 990282 CDS YP_005253590.1 378990426 complement(3232208..3233254) 1 NC_016863.1 catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II 3233254 ansB 990282003092 ansB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-asparaginase II YP_005253590.1 3232208 R 990282 CDS YP_005253591.1 378990427 complement(3233443..3234162) 1 NC_016863.1 hypothetical protein 3234162 yggN 990282003093 yggN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253591.1 3233443 R 990282 CDS YP_005253592.1 378990428 complement(3234212..3234538) 1 NC_016863.1 hypothetical protein 3234538 yggL 990282003094 yggL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253592.1 3234212 R 990282 CDS YP_005253593.1 378990429 complement(3234538..3235257) 1 NC_016863.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 3235257 yggH 990282003095 yggH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA (guanine-N(7)-)-methyltransferase YP_005253593.1 3234538 R 990282 CDS YP_005253594.1 378990430 3235412..3236464 1 NC_016863.1 A/G-specific adenine glycosylase (SW:MUTY_SALTY); adenine DNA glycosylase 3236464 mutY 990282003096 mutY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 adenine DNA glycosylase YP_005253594.1 3235412 D 990282 CDS YP_005253595.1 378990431 3236492..3236767 1 NC_016863.1 hypothetical protein 3236767 yggX 990282003097 yggX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253595.1 3236492 D 990282 CDS YP_005253596.1 378990432 3236880..3237965 1 NC_016863.1 Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C 3237965 mltC 990282003098 mltC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 murein transglycosylase C YP_005253596.1 3236880 D 990282 CDS YP_005253597.1 378990433 complement(3238631..3240766) 1 NC_016863.1 similar to Escherichia coli ornithine decarboxylase isozyme (AAC76002.1); ornithine decarboxylase 3240766 speC 990282003100 speC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ornithine decarboxylase YP_005253597.1 3238631 R 990282 CDS YP_005253598.1 378990434 3241191..3241898 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC76003.1); putative inner membrane protein 3241898 yqgA 990282003101 yqgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253598.1 3241191 D 990282 CDS YP_005253599.1 378990435 complement(3242238..3242672) 1 NC_016863.1 putative lactoylglutathione lyase 3242672 990282003103 STMUK_3105 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative lactoylglutathione lyase YP_005253599.1 3242238 R 990282 CDS YP_005253600.1 378990436 complement(3242683..3244008) 1 NC_016863.1 similar to Escherichia coli putative coenzyme A transferase (AAC75957.1); putative acetyl-CoA hydrolase 3244008 990282003104 STMUK_3106 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acetyl-CoA hydrolase YP_005253600.1 3242683 R 990282 CDS YP_005253601.1 378990437 complement(3244033..3244560) 1 NC_016863.1 similar to Escherichia coli putative aldehyde dehydrogenase (AAC74469.1); putative monoamine oxidase 3244560 990282003105 STMUK_3107 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative monoamine oxidase YP_005253601.1 3244033 R 990282 CDS YP_005253602.1 378990438 complement(3244584..3245426) 1 NC_016863.1 similar to Escherichia coli citrate lyase beta chain; acyl lyase subunit (AAC73717.1); LysR family; putative transcriptional regulator 3245426 990282003106 STMUK_3108 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253602.1 3244584 R 990282 CDS YP_005253603.1 378990439 3245518..3246396 1 NC_016863.1 putative transcriptional regulator (gi|5852589); LysR family; putative transcriptional regulator 3246396 990282003107 STMUK_3109 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253603.1 3245518 D 990282 CDS YP_005253604.1 378990440 complement(3246444..3248183) 1 NC_016863.1 similar to Escherichia coli putative sulfatase (AAC74571.1); putative arylsulfatase 3248183 990282003108 STMUK_3110 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative arylsulfatase YP_005253604.1 3246444 R 990282 CDS YP_005253605.1 378990441 complement(3248252..3249436) 1 NC_016863.1 similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); putative arylsulfatase regulator 3249436 990282003109 STMUK_3111 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative arylsulfatase regulator YP_005253605.1 3248252 R 990282 CDS YP_005253606.1 378990442 3249948..3250631 1 NC_016863.1 similar to Escherichia coli putative regulator (AAC76545.1); contains CheY-like receiver domain and HTH DNA-binding domain; putative response regulator 3250631 990282003110 STMUK_3112 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative response regulator YP_005253606.1 3249948 D 990282 CDS YP_005253607.1 378990443 complement(3250735..3251292) 1 NC_016863.1 putative cytoplasmic protein 3251292 990282003111 STMUK_3113 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253607.1 3250735 R 990282 CDS YP_005253608.1 378990444 complement(3251270..3252769) 1 NC_016863.1 similar to Escherichia coli proline permease transport protein (AAC73505.1); putative amino acid transporter 3252769 990282003112 STMUK_3114 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative amino acid transporter YP_005253608.1 3251270 R 990282 CDS YP_005253609.1 378990445 complement(3252978..3253352) 1 NC_016863.1 putative cytoplasmic protein 3253352 990282003113 STMUK_3115 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253609.1 3252978 R 990282 CDS YP_005253610.1 378990446 complement(3253367..3254668) 1 NC_016863.1 similar to Escherichia coli probable oxidoreductase (AAC74383.1); putative oxidoreductase 3254668 990282003114 STMUK_3116 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidoreductase YP_005253610.1 3253367 R 990282 CDS YP_005253611.1 378990447 3254830..3256314 1 NC_016863.1 similar to Escherichia coli phenylacetaldehyde dehydrogenase (AAC74467.1); putative NAD-dependent aldehyde dehydrogenase 3256314 990282003115 STMUK_3117 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative NAD-dependent aldehyde dehydrogenase YP_005253611.1 3254830 D 990282 CDS YP_005253612.1 378990448 complement(3256450..3256830) 1 NC_016863.1 inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; DNA replication/recombination/repair protein 3256830 iraD 990282003116 iraD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA replication/recombination/repair protein YP_005253612.1 3256450 R 990282 CDS YP_005253613.1 378990449 complement(3256830..3257315) 1 NC_016863.1 putative cytoplasmic protein 3257315 990282003117 STMUK_3119 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253613.1 3256830 R 990282 CDS YP_005253614.1 378990450 complement(3258041..3258964) 1 NC_016863.1 putative xylanase/chitin deacetylase 3258964 990282003118 STMUK_3120 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative xylanase/chitin deacetylase YP_005253614.1 3258041 R 990282 CDS YP_005253615.1 378990451 complement(3259003..3259881) 1 NC_016863.1 putative amidohydrolase 3259881 990282003119 STMUK_3121 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative amidohydrolase YP_005253615.1 3259003 R 990282 CDS YP_005253616.1 378990452 complement(3260277..3261581) 1 NC_016863.1 similar to Escherichia coli transport of hexuronates (AAC76128.1); putative permease 3261581 990282003120 STMUK_3122 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005253616.1 3260277 R 990282 CDS YP_005253617.1 378990453 3261986..3263170 1 NC_016863.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3263170 990282003121 STMUK_3123 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 mannonate dehydratase YP_005253617.1 3261986 D 990282 CDS YP_005253618.1 378990454 3263281..3264753 1 NC_016863.1 similar to Escherichia coli D-mannonate oxidoreductase (AAC77279.1); putative D-mannonate oxidoreductase 3264753 990282003122 STMUK_3124 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative D-mannonate oxidoreductase YP_005253618.1 3263281 D 990282 CDS YP_005253619.1 378990455 3264765..3266177 1 NC_016863.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 3266177 990282003123 STMUK_3125 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucuronate isomerase YP_005253619.1 3264765 D 990282 CDS YP_005253620.1 378990456 complement(3266477..3267535) 1 NC_016863.1 similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); putative methyl-accepting chemotaxis protein 3267535 990282003124 STMUK_3126 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative methyl-accepting chemotaxis protein YP_005253620.1 3266477 R 990282 CDS YP_005253621.1 378990457 complement(3268205..3270061) 1 NC_016863.1 catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase 3270061 gsp 990282003125 gsp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase YP_005253621.1 3268205 R 990282 CDS YP_005253622.1 378990458 3270288..3271154 1 NC_016863.1 YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU 3271154 yghU 990282003126 yghU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glutathione S-transferase YghU YP_005253622.1 3270288 D 990282 CDS YP_005253623.1 378990459 complement(3271222..3271932) 1 NC_016863.1 molybdate ABC transporter substrate-binding protein 3271932 990282003127 STMUK_3129 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 molybdate ABC transporter substrate-binding protein YP_005253623.1 3271222 R 990282 CDS YP_005253624.1 378990460 complement(3271932..3272984) 1 NC_016863.1 putative periplasmic ferrichrome-binding protein 3272984 990282003128 STMUK_3130 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative periplasmic ferrichrome-binding protein YP_005253624.1 3271932 R 990282 CDS YP_005253625.1 378990461 complement(3273060..3273308) 1 NC_016863.1 similar to Escherichia coli hydrogenase-2 chaperone-like protein; may effect maturation of large subunit of hydrogenase-2 (AAC76026.1); hydrogenase 2 accessory protein HypG 3273308 hybG 990282003129 hybG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase 2 accessory protein HypG YP_005253625.1 3273060 R 990282 CDS YP_005253626.1 378990462 complement(3273336..3273677) 1 NC_016863.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF 3273677 hypA 990282003130 hypA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase nickel incorporation protein HybF YP_005253626.1 3273336 R 990282 CDS YP_005253627.1 378990463 complement(3273670..3274158) 1 NC_016863.1 similar to Escherichia coli member of hyb operon (AAC76028.1); hydrogenase 2-specific chaperone 3274158 hybE 990282003131 hybE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase 2-specific chaperone YP_005253627.1 3273670 R 990282 CDS YP_005253628.1 378990464 complement(3274151..3274645) 1 NC_016863.1 protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase 3274645 hybD 990282003132 hybD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase 2 maturation endopeptidase YP_005253628.1 3274151 R 990282 CDS YP_005253629.1 378990465 complement(3274645..3276348) 1 NC_016863.1 involved in hydrogen uptake; hydrogenase 2 large subunit 3276348 hybC 990282003133 hybC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase 2 large subunit YP_005253629.1 3274645 R 990282 CDS YP_005253630.1 378990466 complement(3276345..3277523) 1 NC_016863.1 HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; putative hydrogenase 2 b cytochrome subunit 3277523 hybB 990282003134 hybB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrogenase 2 b cytochrome subunit YP_005253630.1 3276345 R 990282 CDS YP_005253631.1 378990467 complement(3277513..3278499) 1 NC_016863.1 Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA 3278499 hybA 990282003135 hybA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase 2 protein HybA YP_005253631.1 3277513 R 990282 CDS YP_005253632.1 378990468 complement(3278502..3279620) 1 NC_016863.1 involved in hydrogen uptake; hydrogenase 2 small subunit 3279620 hypO 990282003136 hypO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydrogenase 2 small subunit YP_005253632.1 3278502 R 990282 CDS YP_005253633.1 378990469 complement(3279810..3280097) 1 NC_016863.1 putative cytoplasmic protein 3280097 yghW 990282003137 yghW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253633.1 3279810 R 990282 CDS YP_005253634.1 378990470 complement(3280182..3281825) 1 NC_016863.1 similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); putative methyl-accepting chemotaxis protein 3281825 990282003138 STMUK_3140 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative methyl-accepting chemotaxis protein YP_005253634.1 3280182 R 990282 CDS YP_005253635.1 378990471 complement(3282132..3282626) 1 NC_016863.1 hypothetical protein 3282626 yqhA 990282003139 yqhA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253635.1 3282132 R 990282 CDS YP_005253636.1 378990472 complement(3282906..3283421) 1 NC_016863.1 putative ATP-dependent RNA helicase-like protein 3283421 990282003140 STMUK_3142 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ATP-dependent RNA helicase-like protein YP_005253636.1 3282906 R 990282 CDS YP_005253637.1 378990473 3283513..3283923 1 NC_016863.1 putative cytoplasmic protein 3283923 990282003141 STMUK_3143 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253637.1 3283513 D 990282 CDS YP_005253638.1 378990474 3283910..3284314 1 NC_016863.1 putative cytoplasmic protein 3284314 990282003142 STMUK_3144 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253638.1 3283910 D 990282 CDS YP_005253639.1 378990475 3284438..3285322 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC76039.1); oxidoreductase 3285322 yghA 990282003143 yghA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 oxidoreductase YP_005253639.1 3284438 D 990282 CDS YP_005253640.1 378990476 complement(3285435..3285860) 1 NC_016863.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 3285860 exbD 990282003144 exbD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 biopolymer transport protein ExbD YP_005253640.1 3285435 R 990282 CDS YP_005253641.1 378990477 complement(3285867..3286601) 1 NC_016863.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbB 3286601 exbB 990282003145 exbB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 biopolymer transport protein ExbB YP_005253641.1 3285867 R 990282 CDS YP_005253642.1 378990478 complement(3286594..3286743) 1 NC_016863.1 putative inner membrane protein 3286743 990282003146 STMUK_3148 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253642.1 3286594 R 990282 CDS YP_005253643.1 378990479 3286853..3288040 1 NC_016863.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3288040 metC 990282003147 metC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cystathionine beta-lyase YP_005253643.1 3286853 D 990282 CDS YP_005253644.1 378990480 3288180..3288839 1 NC_016863.1 hypothetical protein in metC 3'region (SW:YGHB_SALTY); DedA family; hypothetical protein 3288839 yghB 990282003148 yghB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253644.1 3288180 D 990282 CDS YP_005253645.1 378990481 complement(3288903..3289820) 1 NC_016863.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC76046.1); AraC/XylS family; putative transcriptional regulator 3289820 yqhC 990282003149 yqhC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253645.1 3288903 R 990282 CDS YP_005253646.1 378990482 3289995..3291158 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC76047.1); putative alcohol dehydrogenase 3291158 yqhD 990282003150 yqhD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative alcohol dehydrogenase YP_005253646.1 3289995 D 990282 CDS YP_005253647.1 378990483 3291264..3292091 1 NC_016863.1 methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; 2,5-diketo-D-gluconate reductase A 3292091 dkgA 990282003151 dkgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2,5-diketo-D-gluconate reductase A YP_005253647.1 3291264 D 990282 CDS YP_005253648.1 378990484 3292282..3293742 1 NC_016863.1 similar to Escherichia coli putative membrane pump protein (AAC73857.1); putative cation transporter 3293742 990282003152 STMUK_3154 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cation transporter YP_005253648.1 3292282 D 990282 CDS YP_005253649.1 378990485 3293787..3294242 1 NC_016863.1 Ap4A; putative diadenosine tetraphosphatehydrolase 3294242 990282003153 STMUK_3155 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative diadenosine tetraphosphatehydrolase YP_005253649.1 3293787 D 990282 CDS YP_005253650.1 378990486 complement(3294400..3294594) 1 NC_016863.1 similar to hypothetical protein SPC_3240 (Pid: YP_002638766.1).; hypothetical protein 3294594 990282003154 STMUK_3156 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253650.1 3294400 R 990282 CDS YP_005253651.1 378990487 complement(3294797..3296968) 1 NC_016863.1 putative FeS oxidoreductase family 2; hypothetical protein 3296968 ygiR 990282003155 ygiR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253651.1 3294797 R 990282 CDS YP_005253652.1 378990488 3297456..3298439 1 NC_016863.1 similar to Escherichia coli putative solute-binding transport protein (AAC76603.1); putative periplasmic dicarboxylate-binding protein 3298439 990282003156 STMUK_3158 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative periplasmic dicarboxylate-binding protein YP_005253652.1 3297456 D 990282 CDS YP_005253653.1 378990489 3298481..3298963 1 NC_016863.1 putative inner membrane protein 3298963 990282003157 STMUK_3159 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253653.1 3298481 D 990282 CDS YP_005253654.1 378990490 3298974..3300281 1 NC_016863.1 hypothetical 46.1 kDa protein in plsC 3'region (SW:YGIK_SALTY); integral membrane protein; putative transporter 3300281 ygiK 990282003158 ygiK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transporter YP_005253654.1 3298974 D 990282 CDS YP_005253655.1 378990491 complement(3300326..3301738) 1 NC_016863.1 SufI protein precursor (SW:SUFI_SALTY); putative periplasmic protein; repressor protein for FtsI 3301738 sufI 990282003159 sufI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 repressor protein for FtsI YP_005253655.1 3300326 R 990282 CDS YP_005253656.1 378990492 complement(3301812..3302549) 1 NC_016863.1 1-acyl-SN-glycerol-3-phosphate acyltransferase (SW:PLSC_SALTY); 1-acyl-sn-glycerol-3-phosphate acyltransferase 3302549 plsC 990282003160 plsC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_005253656.1 3301812 R 990282 CDS YP_005253657.1 378990493 complement(3302806..3305064) 1 NC_016863.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3305064 parC 990282003161 parC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA topoisomerase IV subunit A YP_005253657.1 3302806 R 990282 CDS YP_005253658.1 378990494 complement(3305175..3306041) 1 NC_016863.1 AraC family; helix-turn-helix; putative regulatory protein 3306041 990282003162 STMUK_3164 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005253658.1 3305175 R 990282 CDS YP_005253659.1 378990495 complement(3306113..3306505) 1 NC_016863.1 putative outer membrane protein 3306505 ygiW 990282003163 ygiW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005253659.1 3306113 R 990282 CDS YP_005253660.1 378990496 3306657..3307316 1 NC_016863.1 response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; DNA-binding transcriptional regulator QseB 3307316 ygiX 990282003164 ygiX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator QseB YP_005253660.1 3306657 D 990282 CDS YP_005253661.1 378990497 3307313..3308662 1 NC_016863.1 similar to Escherichia coli putative 2-component sensor protein (AAC76062.1); regulatory protein; sensor protein QseC 3308662 ygiY 990282003165 ygiY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sensor protein QseC YP_005253661.1 3307313 D 990282 CDS YP_005253662.1 378990498 3308769..3309350 1 NC_016863.1 similar to Escherichia coli modulator of drug activity B (AAC76064.1); drug modulator; NADPH-specific quinone oxidoreductase 3309350 mdaB 990282003166 mdaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NADPH-specific quinone oxidoreductase YP_005253662.1 3308769 D 990282 CDS YP_005253663.1 378990499 3309382..3309696 1 NC_016863.1 putative cytoplasmic protein 3309696 ygiN 990282003167 ygiN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253663.1 3309382 D 990282 CDS YP_005253664.1 378990500 complement(3309821..3311713) 1 NC_016863.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3311713 parE 990282003168 parE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA topoisomerase IV subunit B YP_005253664.1 3309821 R 990282 CDS YP_005253665.1 378990501 complement(3311741..3312322) 1 NC_016863.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA 3312322 yqiA 990282003169 yqiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 esterase YqiA YP_005253665.1 3311741 R 990282 CDS YP_005253666.1 378990502 complement(3312322..3313149) 1 NC_016863.1 similar to Escherichia coli regulator of lacZ (AAC76068.1); cyclic 3',5'-adenosine monophosphate phosphodiesterase 3313149 icc 990282003170 icc Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cyclic 3',5'-adenosine monophosphate phosphodiesterase YP_005253666.1 3312322 R 990282 CDS YP_005253667.1 378990503 complement(3313174..3313596) 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC76069.1); hypothetical protein 3313596 yqiB 990282003171 yqiB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253667.1 3313174 R 990282 CDS YP_005253668.1 378990504 complement(3313593..3314225) 1 NC_016863.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase NudF 3314225 nudF 990282003172 nudF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ADP-ribose pyrophosphatase NudF YP_005253668.1 3313593 R 990282 CDS YP_005253669.1 378990505 3314426..3315901 1 NC_016863.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3315901 tolC 990282003173 tolC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane channel protein YP_005253669.1 3314426 D 990282 CDS YP_005253670.1 378990506 3316114..3316785 1 NC_016863.1 hypothetical protein 3316785 ygiB 990282003174 ygiB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253670.1 3316114 D 990282 CDS YP_005253671.1 378990507 3316791..3317954 1 NC_016863.1 similar to Escherichia coli putative synthetase/amidase (AAC76074.1); putative glutathionylspermidine synthase 3317954 ygiC 990282003175 ygiC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glutathionylspermidine synthase YP_005253671.1 3316791 D 990282 CDS YP_005253672.1 378990508 complement(3318016..3318846) 1 NC_016863.1 seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; hypothetical protein 3318846 ygiD 990282003176 ygiD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253672.1 3318016 R 990282 CDS YP_005253673.1 378990509 3318945..3319718 1 NC_016863.1 zinc transporter ZupT 3319718 ygiE 990282003177 ygiE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 zinc transporter ZupT YP_005253673.1 3318945 D 990282 CDS YP_005253674.1 378990510 complement(3319785..3319961) 1 NC_016863.1 similar to hypothetical protein SPC_3265 (Pid: YP_002638791.1).; hypothetical protein 3319961 990282003178 STMUK_3180 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253674.1 3319785 R 990282 CDS YP_005253675.1 378990511 3320361..3322157 1 NC_016863.1 putative arylsulfate sulfotransferase 3322157 990282003179 STMUK_3181 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative arylsulfate sulfotransferase YP_005253675.1 3320361 D 990282 CDS YP_005253676.1 378990512 3322177..3322848 1 NC_016863.1 thiol-disulfide isomerase and thioredoxin; putative disulfide bond formation protein 3322848 990282003180 STMUK_3182 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative disulfide bond formation protein YP_005253676.1 3322177 D 990282 CDS YP_005253677.1 378990513 3322863..3323540 1 NC_016863.1 putative disulfide oxidoreductase 3323540 990282003181 STMUK_3183 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative disulfide oxidoreductase YP_005253677.1 3322863 D 990282 CDS YP_005253678.1 378990514 complement(3323711..3324364) 1 NC_016863.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3324364 ribB 990282003182 ribB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_005253678.1 3323711 R 990282 CDS YP_005253679.1 378990515 3324741..3325100 1 NC_016863.1 putative cytoplasmic protein 3325100 yqiC 990282003183 yqiC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253679.1 3324741 D 990282 CDS YP_005253680.1 378990516 complement(3325174..3325383) 1 NC_016863.1 Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS 3325383 glgS 990282003184 glgS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycogen synthesis protein GlgS YP_005253680.1 3325174 R 990282 CDS YP_005253681.1 378990517 3325641..3326261 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC76086.1); putative inner membrane protein 3326261 990282003185 STMUK_3187 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253681.1 3325641 D 990282 CDS YP_005253682.1 378990518 3326280..3327959 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC76087.1); hypothetical protein 3327959 yqiK 990282003186 yqiK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253682.1 3326280 D 990282 CDS YP_005253683.1 378990519 complement(3328419..3329852) 1 NC_016863.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3329852 rfaE 990282003187 rfaE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_005253683.1 3328419 R 990282 CDS YP_005253684.1 378990520 complement(3329900..3332743) 1 NC_016863.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3332743 glnE 990282003188 glnE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_005253684.1 3329900 R 990282 CDS YP_005253685.1 378990521 complement(3332861..3334162) 1 NC_016863.1 putative cytoplasmic protein 3334162 ygiF 990282003189 ygiF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253685.1 3332861 R 990282 CDS YP_005253686.1 378990522 3334404..3335018 1 NC_016863.1 contains putative SH3 domain protein; putative signal transduction protein 3335018 ygiM 990282003190 ygiM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative signal transduction protein YP_005253686.1 3334404 D 990282 CDS YP_005253687.1 378990523 3335081..3336322 1 NC_016863.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the pro; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3336322 cca 990282003191 cca Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_005253687.1 3335081 D 990282 CDS YP_005253688.1 378990524 complement(3336427..3337251) 1 NC_016863.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 3337251 uppP 990282003192 uppP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 undecaprenyl pyrophosphate phosphatase YP_005253688.1 3336427 R 990282 CDS YP_005253689.1 378990525 complement(3337346..3337708) 1 NC_016863.1 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase 3337708 folB 990282003193 folB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase YP_005253689.1 3337346 R 990282 CDS YP_005253690.1 378990526 3337812..3338423 1 NC_016863.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 3338423 ygiH 990282003194 ygiH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycerol-3-phosphate acyltransferase PlsY YP_005253690.1 3337812 D 990282 CDS YP_005253691.1 378990527 complement(3338674..3339687) 1 NC_016863.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteur; putative DNA-binding/iron metalloprotein/AP endonuclease 3339687 gcp 990282003195 gcp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA-binding/iron metalloprotein/AP endonuclease YP_005253691.1 3338674 R 990282 CDS YP_005253692.1 378990528 3339915..3340130 1 NC_016863.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3340130 rpsU 990282003196 rpsU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S21 YP_005253692.1 3339915 D 990282 CDS YP_005253693.1 378990529 3340366..3342111 1 NC_016863.1 synthesizes RNA primers at the replication forks; DNA primase 3342111 dnaG 990282003197 dnaG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA primase YP_005253693.1 3340366 D 990282 CDS YP_005253694.1 378990530 3342126..3344108 1 NC_016863.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3344108 rpoD 990282003198 rpoD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 RNA polymerase sigma factor RpoD YP_005253694.1 3342126 D 990282 CDS YP_005253695.1 378990531 complement(3344232..3344738) 1 NC_016863.1 G/U mismatch-specific DNA glycosylase 3344738 mug 990282003199 mug Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 G/U mismatch-specific DNA glycosylase YP_005253695.1 3344232 R 990282 CDS YP_005253696.1 378990532 complement(3345019..3345786) 1 NC_016863.1 putative transporter 3345786 yqjH 990282003201 yqjH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transporter YP_005253696.1 3345019 R 990282 CDS YP_005253697.1 378990533 3346018..3346665 1 NC_016863.1 putative transcriptional regulator 3346665 yqjI 990282003202 yqjI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253697.1 3346018 D 990282 CDS YP_005253698.1 378990534 complement(3346662..3348227) 1 NC_016863.1 similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); putative methyl-accepting chemotaxis protein 3348227 990282003203 STMUK_3205 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative methyl-accepting chemotaxis protein YP_005253698.1 3346662 R 990282 CDS YP_005253699.1 378990535 complement(3348615..3350135) 1 NC_016863.1 similar to Escherichia coli aerotaxis sensor receptor; flavoprotein (AAC76107.1); senses cellular redox state or proton motive force; aerotaxis sensor receptor 3350135 aer 990282003204 aer Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aerotaxis sensor receptor YP_005253699.1 3348615 R 990282 CDS YP_005253700.1 378990536 3350655..3351944 1 NC_016863.1 catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase 3351944 oat 990282003205 oat Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putrescine--2-oxoglutarate aminotransferase YP_005253700.1 3350655 D 990282 CDS YP_005253701.1 378990537 3352115..3354133 1 NC_016863.1 similar to Escherichia coli putative NADPH dehydrogenase (AAC76116.1); 2,4-dienoyl-CoA reductase 3354133 fadH 990282003206 fadH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2,4-dienoyl-CoA reductase YP_005253701.1 3352115 D 990282 CDS YP_005253702.1 378990538 complement(3354214..3355350) 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC76119.1); putative methyltransferase 3355350 ygjO 990282003207 ygjO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative methyltransferase YP_005253702.1 3354214 R 990282 CDS YP_005253703.1 378990539 3355436..3355933 1 NC_016863.1 putative metal-dependent hydrolase 3355933 ygjP 990282003208 ygjP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative metal-dependent hydrolase YP_005253703.1 3355436 D 990282 CDS YP_005253704.1 378990540 3356085..3356777 1 NC_016863.1 hypothetical protein 3356777 ygjQ 990282003209 ygjQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253704.1 3356085 D 990282 CDS YP_005253705.1 378990541 3356866..3357864 1 NC_016863.1 putative dehydrogenase 3357864 ygjR 990282003210 ygjR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dehydrogenase YP_005253705.1 3356866 D 990282 CDS YP_005253706.1 378990542 3358137..3359105 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC76123.1); putative tellurite resistance protein 3359105 ygjT 990282003211 ygjT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative tellurite resistance protein YP_005253706.1 3358137 D 990282 CDS YP_005253707.1 378990543 3359360..3360604 1 NC_016863.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3360604 ygjU 990282003212 ygjU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 serine/threonine transporter SstT YP_005253707.1 3359360 D 990282 CDS YP_005253708.1 378990544 3361054..3361716 1 NC_016863.1 DedA family; hypothetical protein 3361716 yqjA 990282003213 yqjA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253708.1 3361054 D 990282 CDS YP_005253709.1 378990545 3361720..3362103 1 NC_016863.1 hypothetical protein 3362103 yqjB 990282003214 yqjB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253709.1 3361720 D 990282 CDS YP_005253710.1 378990546 3362248..3362616 1 NC_016863.1 hypothetical protein 3362616 yqjC 990282003215 yqjC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253710.1 3362248 D 990282 CDS YP_005253711.1 378990547 3362658..3362963 1 NC_016863.1 putative inner membrane protein 3362963 yqjD 990282003216 yqjD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253711.1 3362658 D 990282 CDS YP_005253712.1 378990548 3362966..3363364 1 NC_016863.1 putative inner membrane protein 3363364 yqjE 990282003217 yqjE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253712.1 3362966 D 990282 CDS YP_005253713.1 378990549 3363361..3363660 1 NC_016863.1 putative inner membrane protein 3363660 yqjK 990282003218 yqjK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253713.1 3363361 D 990282 CDS YP_005253714.1 378990550 3363805..3364290 1 NC_016863.1 hypothetical protein 3364290 yqjF 990282003219 yqjF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253714.1 3363805 D 990282 CDS YP_005253715.1 378990551 3364358..3365344 1 NC_016863.1 similar to Escherichia coli putative transferase (AAC76137.1); putative glutathione S-transferase 3365344 yqjG 990282003220 yqjG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glutathione S-transferase YP_005253715.1 3364358 D 990282 CDS YP_005253716.1 378990552 3365468..3365833 1 NC_016863.1 similar to Escherichia coli putative cytochrome (AAC76138.1); putative inner membrane protein 3365833 yhaH 990282003221 yhaH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253716.1 3365468 D 990282 CDS YP_005253717.1 378990553 complement(3365872..3366768) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76140.1); LysR family; putative transcriptional regulator 3366768 yhaJ 990282003222 yhaJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253717.1 3365872 R 990282 CDS YP_005253718.1 378990554 3366873..3367574 1 NC_016863.1 putative cytoplasmic protein 3367574 yhaK 990282003223 yhaK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253718.1 3366873 D 990282 CDS YP_005253719.1 378990555 3367598..3367762 1 NC_016863.1 putative cytoplasmic protein 3367762 yhaL 990282003224 yhaL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253719.1 3367598 D 990282 CDS YP_005253720.1 378990556 complement(3367875..3369185) 1 NC_016863.1 putative inner membrane protein 3369185 yhaN 990282003225 yhaN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253720.1 3367875 R 990282 CDS YP_005253721.1 378990557 complement(3369211..3370542) 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein (AAC76145.1); HAAAP family; putative transport protein 3370542 yhaO 990282003226 yhaO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005253721.1 3369211 R 990282 CDS YP_005253722.1 378990558 complement(3370858..3372222) 1 NC_016863.1 similar to Escherichia coli L-serine dehydratase; deaminase L-SD2 (AAC75839.1); L-serine deaminase 3372222 tdcG 990282003227 tdcG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-serine deaminase YP_005253722.1 3370858 R 990282 CDS YP_005253723.1 378990559 complement(3372292..3374586) 1 NC_016863.1 similar to Escherichia coli probable formate acetyltransferase 3 (AAC76149.1); pyruvate formate-lyase 4/2-ketobutyrate formate-lyase 3374586 tdcE 990282003228 tdcE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyruvate formate-lyase 4/2-ketobutyrate formate-lyase YP_005253723.1 3372292 R 990282 CDS YP_005253724.1 378990560 complement(3374620..3375828) 1 NC_016863.1 catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase 3375828 tdcD 990282003229 tdcD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 propionate/acetate kinase YP_005253724.1 3374620 R 990282 CDS YP_005253725.1 378990561 complement(3375894..3377225) 1 NC_016863.1 involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC 3377225 tdcC 990282003230 tdcC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 threonine/serine transporter TdcC YP_005253725.1 3375894 R 990282 CDS YP_005253726.1 378990562 complement(3377246..3378235) 1 NC_016863.1 catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase 3378235 tdcB 990282003231 tdcB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 threonine dehydratase YP_005253726.1 3377246 R 990282 CDS YP_005253727.1 378990563 complement(3378333..3379271) 1 NC_016863.1 regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA 3379271 tdcA 990282003232 tdcA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator TdcA YP_005253727.1 3378333 R 990282 CDS YP_005253728.1 378990564 complement(3381070..3382215) 1 NC_016863.1 glycerate kinase 3382215 garK 990282003233 garK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycerate kinase YP_005253728.1 3381070 R 990282 CDS YP_005253729.1 378990565 complement(3382313..3383203) 1 NC_016863.1 catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase 3383203 garR 990282003234 garR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tartronate semialdehyde reductase YP_005253729.1 3382313 R 990282 CDS YP_005253730.1 378990566 complement(3383229..3383999) 1 NC_016863.1 cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase 3383999 garL 990282003235 garL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alpha-dehydro-beta-deoxy-D-glucarate aldolase YP_005253730.1 3383229 R 990282 CDS YP_005253731.1 378990567 3384529..3386100 1 NC_016863.1 similar to Escherichia coli putative hydrolase (AAC76162.1); galactarate dehydratase 3386100 garD 990282003236 garD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 galactarate dehydratase YP_005253731.1 3384529 D 990282 CDS YP_005253732.1 378990568 complement(3386340..3387287) 1 NC_016863.1 similar to Escherichia coli ribokinase (AAC76775.1); ribokinase family; putative sugar kinase 3387287 990282003237 STMUK_3239 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar kinase YP_005253732.1 3386340 R 990282 CDS YP_005253733.1 378990569 complement(3387298..3388131) 1 NC_016863.1 similar to Escherichia coli putative DeoR-type transcriptional regulator of Aga operon (AAC76165.1); DeoR family; AGA operon transcriptional repressor 3388131 agaR 990282003238 agaR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 AGA operon transcriptional repressor YP_005253733.1 3387298 R 990282 CDS YP_005253734.1 378990570 3388465..3389319 1 NC_016863.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; putative fructose-1,6-bisphosphate aldolase 3389319 gatY 990282003239 gatY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fructose-1,6-bisphosphate aldolase YP_005253734.1 3388465 D 990282 CDS YP_005253735.1 378990571 3389330..3390244 1 NC_016863.1 similar to Escherichia coli 6-phosphofructokinase II; suppressor of pfkA (AAC74793.1); putative fructose-1-phosphate kinase 3390244 990282003240 STMUK_3242 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fructose-1-phosphate kinase YP_005253735.1 3389330 D 990282 CDS YP_005253736.1 378990572 3391106..3392149 1 NC_016863.1 Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 3392149 990282003243 STMUK_3245 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 galactitol-1-phosphate dehydrogenase YP_005253736.1 3391106 D 990282 CDS YP_005253737.1 378990573 3392260..3393033 1 NC_016863.1 similar to Escherichia coli split galactitol utilization operon repressor (AAC75148.1); galactitol utilization operon transcriptional repressor 3393033 990282003244 STMUK_3246 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 galactitol utilization operon transcriptional repressor YP_005253737.1 3392260 D 990282 CDS YP_005253738.1 378990574 complement(3393191..3394054) 1 NC_016863.1 putative methyltransferase 3394054 yraL 990282003245 yraL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative methyltransferase YP_005253738.1 3393191 R 990282 CDS YP_005253739.1 378990575 3394118..3396160 1 NC_016863.1 similar to Escherichia coli putative glycosylase (AAC76181.1); putative transglycosylase 3396160 yraM 990282003246 yraM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transglycosylase YP_005253739.1 3394118 D 990282 CDS YP_005253740.1 378990576 3396118..3396513 1 NC_016863.1 hypothetical protein 3396513 yraN 990282003247 yraN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253740.1 3396118 D 990282 CDS YP_005253741.1 378990577 3396535..3397125 1 NC_016863.1 Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 3397125 yraO 990282003248 yraO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DnaA initiator-associating protein DiaA YP_005253741.1 3396535 D 990282 CDS YP_005253742.1 378990578 3397135..3397710 1 NC_016863.1 similar to Escherichia coli putative periplasmic protein (AAC76184.1); hypothetical protein 3397710 yraP 990282003249 yraP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253742.1 3397135 D 990282 CDS YP_005253743.1 378990579 complement(3397777..3398445) 1 NC_016863.1 putative nucleoside-diphosphate-sugar epimerase 3398445 yraR 990282003250 yraR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative nucleoside-diphosphate-sugar epimerase YP_005253743.1 3397777 R 990282 CDS YP_005253744.1 378990580 3398543..3399061 1 NC_016863.1 putative intracellular proteinase 3399061 yhbO 990282003251 yhbO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative intracellular proteinase YP_005253744.1 3398543 D 990282 CDS YP_005253745.1 378990581 complement(3399041..3399484) 1 NC_016863.1 hypothetical protein 3399484 yhbP 990282003252 yhbP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253745.1 3399041 R 990282 CDS YP_005253746.1 378990582 3399522..3399839 1 NC_016863.1 GIY-YIG nuclease superfamily protein 3399839 yhbQ 990282003253 yhbQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GIY-YIG nuclease superfamily protein YP_005253746.1 3399522 D 990282 CDS YP_005253747.1 378990583 complement(3399826..3400329) 1 NC_016863.1 putative ABC superfamily membrane protein; putative transport protein 3400329 yhbS 990282003254 yhbS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005253747.1 3399826 R 990282 CDS YP_005253748.1 378990584 complement(3400323..3400847) 1 NC_016863.1 putative lipid carrier protein 3400847 yhbT 990282003255 yhbT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative lipid carrier protein YP_005253748.1 3400323 R 990282 CDS YP_005253749.1 378990585 3401064..3402059 1 NC_016863.1 similar to Escherichia coli putative collagenase (AAC76192.1); putative protease 3402059 yhbU 990282003256 yhbU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative protease YP_005253749.1 3401064 D 990282 CDS YP_005253750.1 378990586 3402050..3402946 1 NC_016863.1 putative protease 3402946 yhbV 990282003257 yhbV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative protease YP_005253750.1 3402050 D 990282 CDS YP_005253751.1 378990587 3403124..3404131 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC76194.1); hypothetical protein 3404131 yhbW 990282003258 yhbW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253751.1 3403124 D 990282 CDS YP_005253752.1 378990588 complement(3404109..3404828) 1 NC_016863.1 putative inner membrane protein 3404828 990282003259 STMUK_3261 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253752.1 3404109 R 990282 CDS YP_005253753.1 378990589 3404987..3405517 1 NC_016863.1 putative cytoplasmic protein 3405517 990282003260 STMUK_3262 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253753.1 3404987 D 990282 CDS YP_005253754.1 378990590 complement(3405578..3406822) 1 NC_016863.1 tryptophan transporter of high affinity; tryptophan permease 3406822 mtr 990282003261 mtr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tryptophan permease YP_005253754.1 3405578 R 990282 CDS YP_005253755.1 378990591 complement(3406976..3408916) 1 NC_016863.1 participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD 3408916 deaD 990282003262 deaD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent RNA helicase DeaD YP_005253755.1 3406976 R 990282 CDS YP_005253756.1 378990592 complement(3409044..3409928) 1 NC_016863.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 3409928 nlpI 990282003263 nlpI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipoprotein NlpI YP_005253756.1 3409044 R 990282 CDS YP_005253757.1 378990593 complement(3410038..3412173) 1 NC_016863.1 similar to Escherichia coli polynucleotide phosphorylase; cytidylate kinase activity (AAC76198.1); member of mRNA degradosome; polynucleotide phosphorylase/polyadenylase 3412173 pnp 990282003264 pnp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 polynucleotide phosphorylase/polyadenylase YP_005253757.1 3410038 R 990282 CDS YP_005253758.1 378990594 complement(3412415..3412684) 1 NC_016863.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 3412684 rpsO 990282003265 rpsO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S15 YP_005253758.1 3412415 R 990282 CDS YP_005253759.1 378990595 complement(3412835..3413779) 1 NC_016863.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 3413779 truB 990282003266 truB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA pseudouridine synthase B YP_005253759.1 3412835 R 990282 CDS YP_005253760.1 378990596 complement(3413779..3414180) 1 NC_016863.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 3414180 rbfA 990282003267 rbfA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribosome-binding factor A YP_005253760.1 3413779 R 990282 CDS YP_005253761.1 378990597 complement(3414401..3417079) 1 NC_016863.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 3417079 infB 990282003268 infB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 translation initiation factor IF-2 YP_005253761.1 3414401 R 990282 CDS YP_005253762.1 378990598 complement(3417104..3418606) 1 NC_016863.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 3418606 nusA 990282003269 nusA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcription elongation factor NusA YP_005253762.1 3417104 R 990282 CDS YP_005253763.1 378990599 complement(3418634..3419056) 1 NC_016863.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 3419056 yhbC 990282003270 yhbC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253763.1 3418634 R 990282 CDS YP_005253764.1 378990600 3419648..3421057 1 NC_016863.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3421057 argG 990282003272 argG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 argininosuccinate synthase YP_005253764.1 3419648 D 990282 CDS YP_005253765.1 378990601 complement(3421143..3422207) 1 NC_016863.1 putative cytoplasmic protein 3422207 990282003273 STMUK_3275 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253765.1 3421143 R 990282 CDS YP_005253766.1 378990602 complement(3422643..3422975) 1 NC_016863.1 similar to Escherichia coli protein export; membrane protein (AAC76207.1); IISP family; auxillary membrane component; preprotein translocase subunit SecG 3422975 secG 990282003275 secG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 preprotein translocase subunit SecG YP_005253766.1 3422643 R 990282 CDS YP_005253767.1 378990603 complement(3423198..3424535) 1 NC_016863.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 3424535 glmM 990282003276 glmM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoglucosamine mutase YP_005253767.1 3423198 R 990282 CDS YP_005253768.1 378990604 complement(3424528..3425376) 1 NC_016863.1 catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate; dihydropteroate synthase 3425376 folP 990282003277 folP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dihydropteroate synthase YP_005253768.1 3424528 R 990282 CDS YP_005253769.1 378990605 complement(3425523..3425981) 1 NC_016863.1 transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 3425981 tnpA_6 990282003278 tnpA_6 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transposase for IS200 YP_005253769.1 3425523 R 990282 CDS YP_005253770.1 378990606 complement(3426192..3428126) 1 NC_016863.1 inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease 3428126 ftsH 990282003279 ftsH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent metalloprotease YP_005253770.1 3426192 R 990282 CDS YP_005253771.1 378990607 complement(3428230..3428856) 1 NC_016863.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 3428856 rrmJ 990282003280 rrmJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 23S rRNA methyltransferase J YP_005253771.1 3428230 R 990282 CDS YP_005253772.1 378990608 3428944..3429276 1 NC_016863.1 RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 3429276 yhbY 990282003281 yhbY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 RNA-binding protein YhbY YP_005253772.1 3428944 D 990282 CDS YP_005253773.1 378990609 complement(3429432..3429908) 1 NC_016863.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary com; transcription elongation factor GreA 3429908 greA 990282003282 greA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcription elongation factor GreA YP_005253773.1 3429432 R 990282 CDS YP_005253774.1 378990610 complement(3429962..3430063) 1 NC_016863.1 similar to hypothetical protein SeSA_A3490 (Pid: YP_002116248.1).; hypothetical protein 3430063 990282003283 STMUK_3285 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253774.1 3429962 R 990282 CDS YP_005253775.1 378990611 3430156..3431589 1 NC_016863.1 penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chain; D-alanyl-D-alanine carboxypeptidase 3431589 dacB 990282003284 dacB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-alanyl-D-alanine carboxypeptidase YP_005253775.1 3430156 D 990282 CDS YP_005253776.1 378990612 complement(3431721..3432893) 1 NC_016863.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 3432893 obgE 990282003285 obgE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GTPase ObgE YP_005253776.1 3431721 R 990282 CDS YP_005253777.1 378990613 complement(3432909..3433874) 1 NC_016863.1 similar to hypothetical protein STY3481 (Pid: NP_457681.1).; hypothetical protein 3433874 990282003286 STMUK_3288 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253777.1 3432909 R 990282 CDS YP_005253778.1 378990614 complement(3434004..3434261) 1 NC_016863.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 3434261 rpmA 990282003287 rpmA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L27 YP_005253778.1 3434004 R 990282 CDS YP_005253779.1 378990615 complement(3434281..3434592) 1 NC_016863.1 similar to Escherichia coli 50S ribosomal subunit protein L21 (AAC76218.1); 50S ribosomal protein L21 3434592 rplU 990282003288 rplU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L21 YP_005253779.1 3434281 R 990282 CDS YP_005253780.1 378990616 3434850..3435821 1 NC_016863.1 similar to Escherichia coli octaprenyl diphosphate synthase (AAC76219.1); octaprenyl diphosphate synthase 3435821 ispB 990282003289 ispB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 octaprenyl diphosphate synthase YP_005253780.1 3434850 D 990282 CDS YP_005253781.1 378990617 3436053..3436340 1 NC_016863.1 activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 3436340 nlp 990282003290 nlp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator Nlp YP_005253781.1 3436053 D 990282 CDS YP_005253782.1 378990618 complement(3436398..3437657) 1 NC_016863.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3437657 murA 990282003291 murA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_005253782.1 3436398 R 990282 CDS YP_005253783.1 378990619 complement(3437711..3438004) 1 NC_016863.1 BolA family; putative transcriptional regulator 3438004 yrbA 990282003292 yrbA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005253783.1 3437711 R 990282 CDS YP_005253784.1 378990620 complement(3438153..3438449) 1 NC_016863.1 putative STAS domain; hypothetical protein 3438449 yrbB 990282003293 yrbB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253784.1 3438153 R 990282 CDS YP_005253785.1 378990621 complement(3438449..3439084) 1 NC_016863.1 putative ABC superfamily; putative transport protein 3439084 yrbC 990282003294 yrbC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005253785.1 3438449 R 990282 CDS YP_005253786.1 378990622 complement(3439103..3439654) 1 NC_016863.1 putative ABC superfamily binding protein; putative transport protein 3439654 yrbD 990282003295 yrbD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005253786.1 3439103 R 990282 CDS YP_005253787.1 378990623 complement(3439659..3440441) 1 NC_016863.1 putative ABC superfamily membrane protein; putative transport protein 3440441 yrbE 990282003296 yrbE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005253787.1 3439659 R 990282 CDS YP_005253788.1 378990624 complement(3440449..3441261) 1 NC_016863.1 ATP-binding subunit of a putative ABC toluene efflux transporter; putative ABC transporter ATP-binding protein YrbF 3441261 yrbF 990282003297 yrbF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter ATP-binding protein YrbF YP_005253788.1 3440449 R 990282 CDS YP_005253789.1 378990625 3441474..3442451 1 NC_016863.1 YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; putative calcium/sodium:proton antiporter 3442451 yrbG 990282003298 yrbG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative calcium/sodium:proton antiporter YP_005253789.1 3441474 D 990282 CDS YP_005253790.1 378990626 3442465..3443451 1 NC_016863.1 similar to Escherichia coli putative isomerase (AAC76229.1); polysialic acid capsule expression protein; D-arabinose 5-phosphate isomerase 3443451 yrbH 990282003299 yrbH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-arabinose 5-phosphate isomerase YP_005253790.1 3442465 D 990282 CDS YP_005253791.1 378990627 3443472..3444038 1 NC_016863.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3444038 yrbI 990282003300 yrbI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_005253791.1 3443472 D 990282 CDS YP_005253792.1 378990628 3444035..3444610 1 NC_016863.1 hypothetical protein 3444610 yrbK 990282003301 yrbK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253792.1 3444035 D 990282 CDS YP_005253793.1 378990629 3444579..3445133 1 NC_016863.1 LptA; periplasmic binding protein part of a putative ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; lipopolysaccharide transport periplasmic protein LptA 3445133 yhbN 990282003302 yhbN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipopolysaccharide transport periplasmic protein LptA YP_005253793.1 3444579 D 990282 CDS YP_005253794.1 378990630 3445140..3445865 1 NC_016863.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC76233.1); putative ABC superfamily ATP-binding protein; putative ABC transporter ATP-binding protein YhbG 3445865 yhbG 990282003303 yhbG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter ATP-binding protein YhbG YP_005253794.1 3445140 D 990282 CDS YP_005253795.1 378990631 3445913..3447346 1 NC_016863.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizo; RNA polymerase factor sigma-54 3447346 rpoN 990282003304 rpoN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 RNA polymerase factor sigma-54 YP_005253795.1 3445913 D 990282 CDS YP_005253796.1 378990632 3447369..3447656 1 NC_016863.1 YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigm; putative sigma(54) modulation protein 3447656 yhbH 990282003305 yhbH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sigma(54) modulation protein YP_005253796.1 3447369 D 990282 CDS YP_005253797.1 378990633 3447774..3448265 1 NC_016863.1 similar to Escherichia coli phosphotransferase system enzyme IIA; regulates N metabolism (AAC76236.1); PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 3448265 ptsN 990282003306 ptsN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_005253797.1 3447774 D 990282 CDS YP_005253798.1 378990634 3448311..3449165 1 NC_016863.1 putative kinase; contains putative P-loop; hypothetical protein 3449165 yhbJ 990282003307 yhbJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253798.1 3448311 D 990282 CDS YP_005253799.1 378990635 3449162..3449434 1 NC_016863.1 similar to Escherichia coli phosphocarrier protein HPr-like NPr; nitrogen-related; exchanges phosphate with Enzyme I Hpr (AAC76238.1); phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3449434 ptsO 990282003308 ptsO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) YP_005253799.1 3449162 D 990282 CDS YP_005253800.1 378990636 3449683..3450315 1 NC_016863.1 hypothetical protein 3450315 yrbL 990282003309 yrbL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253800.1 3449683 D 990282 CDS YP_005253801.1 378990637 complement(3450390..3451118) 1 NC_016863.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 3451118 mtgA 990282003310 mtgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 monofunctional biosynthetic peptidoglycan transglycosylase YP_005253801.1 3450390 R 990282 CDS YP_005253802.1 378990638 complement(3451115..3451768) 1 NC_016863.1 similar to Escherichia coli sigma cross-reacting protein 27A (AAC76241.1); SCRP-27A; isoprenoid biosynthesis protein with amidotransferase-like domain 3451768 yhbL 990282003311 yhbL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 isoprenoid biosynthesis protein with amidotransferase-like domain YP_005253802.1 3451115 R 990282 CDS YP_005253803.1 378990639 complement(3451995..3454331) 1 NC_016863.1 sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB 3454331 arcB 990282003312 arcB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aerobic respiration control sensor protein ArcB YP_005253803.1 3451995 R 990282 CDS YP_005253804.1 378990640 complement(3454425..3455354) 1 NC_016863.1 putative FeS oxidoreductase 3455354 yhcC 990282003313 yhcC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative FeS oxidoreductase YP_005253804.1 3454425 R 990282 CDS YP_005253805.1 378990641 3456026..3460486 1 NC_016863.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3460486 gltB 990282003314 gltB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamate synthase subunit alpha YP_005253805.1 3456026 D 990282 CDS YP_005253806.1 378990642 3460496..3461914 1 NC_016863.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3461914 gltD 990282003315 gltD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamate synthase subunit beta YP_005253806.1 3460496 D 990282 CDS YP_005253807.1 378990643 3462121..3463224 1 NC_016863.1 putative cytoplasmic protein 3463224 yhcG 990282003316 yhcG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253807.1 3462121 D 990282 CDS YP_005253808.1 378990644 3463341..3464594 1 NC_016863.1 similar to Escherichia coli cytosine permease/transport (AAC73439.1); cytosine permease 3464594 codB 990282003317 codB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytosine permease YP_005253808.1 3463341 D 990282 CDS YP_005253809.1 378990645 3464581..3465861 1 NC_016863.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3465861 990282003318 STMUK_3320 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytosine deaminase YP_005253809.1 3464581 D 990282 CDS YP_005253810.1 378990646 complement(3465944..3466411) 1 NC_016863.1 putative cytoplasmic protein 3466411 yhcH 990282003319 yhcH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253810.1 3465944 R 990282 CDS YP_005253811.1 378990647 complement(3466408..3467283) 1 NC_016863.1 catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase 3467283 nanK 990282003320 nanK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-acetylmannosamine kinase YP_005253811.1 3466408 R 990282 CDS YP_005253812.1 378990648 complement(3467280..3467969) 1 NC_016863.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 3467969 nanE 990282003321 nanE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-acetylmannosamine-6-phosphate 2-epimerase YP_005253812.1 3467280 R 990282 CDS YP_005253813.1 378990649 complement(3468016..3469506) 1 NC_016863.1 similar to Escherichia coli sialic acid transporter (AAC76256.1); MFS family; putative sialic acid transporter 3469506 nanT 990282003322 nanT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sialic acid transporter YP_005253813.1 3468016 R 990282 CDS YP_005253814.1 378990650 complement(3469622..3470515) 1 NC_016863.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 3470515 nanA 990282003323 nanA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-acetylneuraminate lyase YP_005253814.1 3469622 R 990282 CDS YP_005253815.1 378990651 complement(3470650..3471441) 1 NC_016863.1 Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR 3471441 yhcK 990282003324 yhcK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator NanR YP_005253815.1 3470650 R 990282 CDS YP_005253816.1 378990652 complement(3471550..3472050) 1 NC_016863.1 similar to Escherichia coli stringent starvation protein B (AAC76260.1); ClpXP protease specificity-enhancing factor 3472050 sspB 990282003325 sspB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ClpXP protease specificity-enhancing factor YP_005253816.1 3471550 R 990282 CDS YP_005253817.1 378990653 complement(3472056..3472694) 1 NC_016863.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 3472694 sspA 990282003326 sspA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 stringent starvation protein A YP_005253817.1 3472056 R 990282 CDS YP_005253818.1 378990654 complement(3472957..3473709) 1 NC_016863.1 putative cytoplasmic protein 3473709 990282003327 STMUK_3329 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253818.1 3472957 R 990282 CDS YP_005253819.1 378990655 complement(3473909..3474301) 1 NC_016863.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3474301 rpsI 990282003328 rpsI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S9 YP_005253819.1 3473909 R 990282 CDS YP_005253820.1 378990656 complement(3474317..3474745) 1 NC_016863.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3474745 rplM 990282003329 rplM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L13 YP_005253820.1 3474317 R 990282 CDS YP_005253821.1 378990657 complement(3475048..3476172) 1 NC_016863.1 putative ATPase 3476172 yhcM 990282003330 yhcM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ATPase YP_005253821.1 3475048 R 990282 CDS YP_005253822.1 378990658 3476359..3476763 1 NC_016863.1 cytochrome d ubiquinol oxidase subunit III 3476763 yhcB 990282003331 yhcB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome d ubiquinol oxidase subunit III YP_005253822.1 3476359 D 990282 CDS YP_005253823.1 378990659 3476920..3478287 1 NC_016863.1 similar to Escherichia coli serine endoprotease (AAC76266.1); serine endoprotease 3478287 degQ 990282003332 degQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 serine endoprotease YP_005253823.1 3476920 D 990282 CDS YP_005253824.1 378990660 3478380..3479450 1 NC_016863.1 similar to Escherichia coli protease (AAC76267.1); serine endoprotease 3479450 degS 990282003333 degS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 serine endoprotease YP_005253824.1 3478380 D 990282 CDS YP_005253825.1 378990661 complement(3479484..3480215) 1 NC_016863.1 similar to STM0063; putative inner membrane protein 3480215 990282003334 STMUK_3336 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253825.1 3479484 R 990282 CDS YP_005253826.1 378990662 complement(3480235..3481536) 1 NC_016863.1 oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); putative sodium ion pump oxaloacetate decarboxylase beta chain 3481536 oadB 990282003335 oadB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sodium ion pump oxaloacetate decarboxylase beta chain YP_005253826.1 3480235 R 990282 CDS YP_005253827.1 378990663 complement(3481552..3483327) 1 NC_016863.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 3483327 oadA 990282003336 oadA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 oxaloacetate decarboxylase YP_005253827.1 3481552 R 990282 CDS YP_005253828.1 378990664 complement(3483343..3483597) 1 NC_016863.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 3483597 oadG 990282003337 oadG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 oxaloacetate decarboxylase subunit gamma YP_005253828.1 3483343 R 990282 CDS YP_005253829.1 378990665 complement(3483753..3484370) 1 NC_016863.1 Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta 3484370 990282003338 STMUK_3340 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L(+)-tartrate dehydratase subunit beta YP_005253829.1 3483753 R 990282 CDS YP_005253830.1 378990666 complement(3484370..3485269) 1 NC_016863.1 Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha 3485269 990282003339 STMUK_3341 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tartrate dehydratase subunit alpha YP_005253830.1 3484370 R 990282 CDS YP_005253831.1 378990667 complement(3485302..3486570) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75352.1); putative cation transporter 3486570 990282003340 STMUK_3342 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cation transporter YP_005253831.1 3485302 R 990282 CDS YP_005253832.1 378990668 complement(3486781..3487446) 1 NC_016863.1 GntR family; putative regulatory protein 3487446 990282003341 STMUK_3343 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005253832.1 3486781 R 990282 CDS YP_005253833.1 378990669 complement(3487433..3488062) 1 NC_016863.1 GntR family; putative regulatory protein 3488062 990282003342 STMUK_3344 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005253833.1 3487433 R 990282 CDS YP_005253834.1 378990670 complement(3488182..3489120) 1 NC_016863.1 oxidizes malate to oxaloacetate; malate dehydrogenase 3489120 mdh 990282003343 mdh Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 malate dehydrogenase YP_005253834.1 3488182 R 990282 CDS YP_005253835.1 378990671 3489534..3490004 1 NC_016863.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 3490004 argR 990282003344 argR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 arginine repressor YP_005253835.1 3489534 D 990282 CDS YP_005253836.1 378990672 3490369..3490632 1 NC_016863.1 putative outer membrane protein 3490632 yhcN 990282003345 yhcN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005253836.1 3490369 D 990282 CDS YP_005253837.1 378990673 3490736..3491002 1 NC_016863.1 hypothetical protein 3491002 990282003346 STMUK_3348 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253837.1 3490736 D 990282 CDS YP_005253838.1 378990674 complement(3491062..3491334) 1 NC_016863.1 putative cytoplasmic protein 3491334 yhcO 990282003347 yhcO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253838.1 3491062 R 990282 CDS YP_005253839.1 378990675 complement(3491506..3493473) 1 NC_016863.1 with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB 3493473 yhcP 990282003348 yhcP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 p-hydroxybenzoic acid efflux subunit AaeB YP_005253839.1 3491506 R 990282 CDS YP_005253840.1 378990676 complement(3493479..3494411) 1 NC_016863.1 with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeA 3494411 yhcQ 990282003349 yhcQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 p-hydroxybenzoic acid efflux subunit AaeA YP_005253840.1 3493479 R 990282 CDS YP_005253841.1 378990677 complement(3494419..3494622) 1 NC_016863.1 membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein 3494622 yhcR 990282003350 yhcR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253841.1 3494419 R 990282 CDS YP_005253842.1 378990678 3494804..3495733 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76275.1); LysR family; putative DNA-binding transcriptional regulator 3495733 yhcS 990282003351 yhcS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA-binding transcriptional regulator YP_005253842.1 3494804 D 990282 CDS YP_005253843.1 378990679 complement(3495856..3497301) 1 NC_016863.1 responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD 3497301 tldD 990282003352 tldD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 protease TldD YP_005253843.1 3495856 R 990282 CDS YP_005253844.1 378990680 complement(3497446..3501246) 1 NC_016863.1 hypothetical protein 3501246 yhdP 990282003353 yhdP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253844.1 3497446 R 990282 CDS YP_005253845.1 378990681 complement(3501353..3502822) 1 NC_016863.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 3502822 cafA 990282003354 cafA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonuclease G YP_005253845.1 3501353 R 990282 CDS YP_005253846.1 378990682 complement(3502812..3503405) 1 NC_016863.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 3503405 maf 990282003355 maf Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Maf-like protein YP_005253846.1 3502812 R 990282 CDS YP_005253847.1 378990683 complement(3503414..3503905) 1 NC_016863.1 part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD 3503905 mreD 990282003356 mreD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 rod shape-determining protein MreD YP_005253847.1 3503414 R 990282 CDS YP_005253848.1 378990684 complement(3503905..3504957) 1 NC_016863.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3504957 mreC 990282003357 mreC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 rod shape-determining protein MreC YP_005253848.1 3503905 R 990282 CDS YP_005253849.1 378990685 complement(3505022..3506065) 1 NC_016863.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3506065 mreB 990282003358 mreB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 rod shape-determining protein MreB YP_005253849.1 3505022 R 990282 CDS YP_005253850.1 378990686 complement(3506373..3508313) 1 NC_016863.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 3508313 yhdA 990282003359 yhdA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 regulatory protein CsrD YP_005253850.1 3506373 R 990282 CDS YP_005253851.1 378990687 3508517..3509491 1 NC_016863.1 similar to Escherichia coli putative dehydrogenase (AAC76285.1); putative oxidoreductase 3509491 yhdH 990282003360 yhdH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidoreductase YP_005253851.1 3508517 D 990282 CDS YP_005253852.1 378990688 3509604..3510608 1 NC_016863.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 3510608 990282003361 STMUK_3363 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sulfite oxidase subunit YedY YP_005253852.1 3509604 D 990282 CDS YP_005253853.1 378990689 3510609..3511208 1 NC_016863.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 3511208 990282003362 STMUK_3364 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sulfite oxidase subunit YedZ YP_005253853.1 3510609 D 990282 CDS YP_005253854.1 378990690 3511601..3512071 1 NC_016863.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3512071 accB 990282003363 accB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_005253854.1 3511601 D 990282 CDS YP_005253855.1 378990691 3512082..3513431 1 NC_016863.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 3513431 accC 990282003364 accC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetyl-CoA carboxylase biotin carboxylase subunit YP_005253855.1 3512082 D 990282 CDS YP_005253856.1 378990692 3513540..3513782 1 NC_016863.1 hypothetical protein 3513782 yhdT 990282003365 yhdT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253856.1 3513540 D 990282 CDS YP_005253857.1 378990693 3513772..3515223 1 NC_016863.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3515223 panF 990282003366 panF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sodium/panthothenate symporter YP_005253857.1 3513772 D 990282 CDS YP_005253858.1 378990694 3515235..3516116 1 NC_016863.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3516116 prmA 990282003367 prmA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L11 methyltransferase YP_005253858.1 3515235 D 990282 CDS YP_005253859.1 378990695 3516777..3517742 1 NC_016863.1 putative TIM-barrel enzyme; hypothetical 35.9 kDa protein in pmrA-fis intergenic region (SW:YHDG_SALTY); tRNA-dihydrouridine synthase B 3517742 yhdG 990282003368 yhdG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA-dihydrouridine synthase B YP_005253859.1 3516777 D 990282 CDS YP_005253860.1 378990696 3517768..3518064 1 NC_016863.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3518064 fis 990282003369 fis Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding protein Fis YP_005253860.1 3517768 D 990282 CDS YP_005253861.1 378990697 3518150..3519034 1 NC_016863.1 similar to Escherichia coli putative methyltransferase (AAC76294.1); putative methyltransferase 3519034 yhdJ 990282003370 yhdJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative methyltransferase YP_005253861.1 3518150 D 990282 CDS YP_005253862.1 378990698 3519117..3519281 1 NC_016863.1 hypothetical protein 3519281 yhdU 990282003371 yhdU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253862.1 3519117 D 990282 CDS YP_005253863.1 378990699 3519432..3521531 1 NC_016863.1 membrane domain involved in; diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain 2; putative signal transduction protein 3521531 990282003372 STMUK_3374 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative signal transduction protein YP_005253863.1 3519432 D 990282 CDS YP_005253864.1 378990700 complement(3521534..3522196) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator (AAC76296.1); regulator for envCD; acrEF; TetR/AcrR family; DNA-binding transcriptional regulator EnvR 3522196 envR 990282003373 envR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator EnvR YP_005253864.1 3521534 R 990282 CDS YP_005253865.1 378990701 3522610..3523767 1 NC_016863.1 similar to Escherichia coli transmembrane protein affects septum formation and cell membrane permeability (AAC76297.1); acriflavine resistance protein E 3523767 acrE 990282003374 acrE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acriflavine resistance protein E YP_005253865.1 3522610 D 990282 CDS YP_005253866.1 378990702 3523779..3526892 1 NC_016863.1 similar to Escherichia coli integral transmembrane protein; acridine resistance protein F (AAC76298.1); RND family; multidrug transport protein 3526892 acrF 990282003375 acrF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multidrug transport protein YP_005253866.1 3523779 D 990282 CDS YP_005253867.1 378990703 3527128..3527349 1 NC_016863.1 putative outer membrane lipoprotein 3527349 yhdV 990282003376 yhdV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005253867.1 3527128 D 990282 CDS YP_005253868.1 378990704 3533947..3534501 1 NC_016863.1 similar to Escherichia coli putative transferase (AAC76304.1); putative ferripyochelin-binding protein 3534501 yrdA 990282003383 yrdA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ferripyochelin-binding protein YP_005253868.1 3533947 D 990282 CDS YP_005253869.1 378990705 complement(3534477..3534734) 1 NC_016863.1 hypothetical protein 3534734 yrdB 990282003384 yrdB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253869.1 3534477 R 990282 CDS YP_005253870.1 378990706 complement(3534731..3535549) 1 NC_016863.1 catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3535549 aroE 990282003385 aroE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 shikimate 5-dehydrogenase YP_005253870.1 3534731 R 990282 CDS YP_005253871.1 378990707 complement(3535554..3536126) 1 NC_016863.1 RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; putative ribosome maturation factor 3536126 yrdC 990282003386 yrdC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ribosome maturation factor YP_005253871.1 3535554 R 990282 CDS YP_005253872.1 378990708 complement(3536131..3536673) 1 NC_016863.1 similar to Escherichia coli putative DNA topoisomerase (AAC76308.1); putative DNA topoisomerase 3536673 yrdD 990282003387 yrdD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA topoisomerase YP_005253872.1 3536131 R 990282 CDS YP_005253873.1 378990709 complement(3536700..3537173) 1 NC_016863.1 hypothetical protein 3537173 smg 990282003388 smg Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253873.1 3536700 R 990282 CDS YP_005253874.1 378990710 complement(3537145..3538269) 1 NC_016863.1 similar to Escherichia coli orf; fragment 1 (AAC76311.1); putative protein involved in DNA uptake; DNA protecting protein DprA 3538269 smf 990282003389 smf Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA protecting protein DprA YP_005253874.1 3537145 R 990282 CDS YP_005253875.1 378990711 3538401..3538910 1 NC_016863.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3538910 def 990282003390 def Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptide deformylase YP_005253875.1 3538401 D 990282 CDS YP_005253876.1 378990712 3538926..3539873 1 NC_016863.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3539873 fmt 990282003391 fmt Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 methionyl-tRNA formyltransferase YP_005253876.1 3538926 D 990282 CDS YP_005253877.1 378990713 3539925..3541214 1 NC_016863.1 catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase B 3541214 sun 990282003392 sun Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 16S rRNA methyltransferase B YP_005253877.1 3539925 D 990282 CDS YP_005253878.1 378990714 3541236..3542612 1 NC_016863.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 3542612 sapG 990282003393 sapG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 potassium transporter peripheral membrane protein YP_005253878.1 3541236 D 990282 CDS YP_005253879.1 378990715 3542754..3543167 1 NC_016863.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3543167 mscL 990282003394 mscL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 large-conductance mechanosensitive channel YP_005253879.1 3542754 D 990282 CDS YP_005253880.1 378990716 complement(3543103..3543372) 1 NC_016863.1 putative cytoplasmic protein 3543372 990282003395 STMUK_3397 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253880.1 3543103 R 990282 CDS YP_005253881.1 378990717 complement(3543430..3543855) 1 NC_016863.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 3543855 zntR 990282003396 zntR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 zinc-responsive transcriptional regulator YP_005253881.1 3543430 R 990282 CDS YP_005253882.1 378990718 complement(3543866..3544234) 1 NC_016863.1 hypothetical protein 3544234 yhdN 990282003397 yhdN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253882.1 3543866 R 990282 CDS YP_005253883.1 378990719 complement(3544342..3544725) 1 NC_016863.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 3544725 rplQ 990282003398 rplQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L17 YP_005253883.1 3544342 R 990282 CDS YP_005253884.1 378990720 complement(3544766..3545755) 1 NC_016863.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 3545755 rpoA 990282003399 rpoA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-directed RNA polymerase subunit alpha YP_005253884.1 3544766 R 990282 CDS YP_005253885.1 378990721 complement(3545781..3546401) 1 NC_016863.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic; 30S ribosomal protein S4 3546401 rpsD 990282003400 rpsD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S4 YP_005253885.1 3545781 R 990282 CDS YP_005253886.1 378990722 complement(3546435..3546824) 1 NC_016863.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 3546824 rpsK 990282003401 rpsK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S11 YP_005253886.1 3546435 R 990282 CDS YP_005253887.1 378990723 complement(3546841..3547197) 1 NC_016863.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 3547197 rpsM 990282003402 rpsM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S13 YP_005253887.1 3546841 R 990282 CDS YP_005253888.1 378990724 complement(3547344..3547460) 1 NC_016863.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc io; 50S ribosomal protein L36 3547460 rpmJ 990282003403 rpmJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L36 YP_005253888.1 3547344 R 990282 CDS YP_005253889.1 378990725 complement(3547492..3548823) 1 NC_016863.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 3548823 secY 990282003404 secY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 preprotein translocase subunit SecY YP_005253889.1 3547492 R 990282 CDS YP_005253890.1 378990726 complement(3548831..3549265) 1 NC_016863.1 late assembly protein; 50S ribosomal protein L15 3549265 rplO 990282003405 rplO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L15 YP_005253890.1 3548831 R 990282 CDS YP_005253891.1 378990727 complement(3549269..3549448) 1 NC_016863.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 3549448 rpmD 990282003406 rpmD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L30 YP_005253891.1 3549269 R 990282 CDS YP_005253892.1 378990728 complement(3549452..3549955) 1 NC_016863.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 3549955 rpsE 990282003407 rpsE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S5 YP_005253892.1 3549452 R 990282 CDS YP_005253893.1 378990729 complement(3549970..3550323) 1 NC_016863.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 3550323 rplR 990282003408 rplR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L18 YP_005253893.1 3549970 R 990282 CDS YP_005253894.1 378990730 complement(3550333..3550866) 1 NC_016863.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resist; 50S ribosomal protein L6 3550866 rplF 990282003409 rplF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L6 YP_005253894.1 3550333 R 990282 CDS YP_005253895.1 378990731 complement(3550879..3551271) 1 NC_016863.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 3551271 rpsH 990282003410 rpsH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S8 YP_005253895.1 3550879 R 990282 CDS YP_005253896.1 378990732 complement(3551305..3551610) 1 NC_016863.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are prese; 30S ribosomal protein S14 3551610 rpsN 990282003411 rpsN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S14 YP_005253896.1 3551305 R 990282 CDS YP_005253897.1 378990733 complement(3551625..3552164) 1 NC_016863.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 3552164 rplE 990282003412 rplE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L5 YP_005253897.1 3551625 R 990282 CDS YP_005253898.1 378990734 complement(3552179..3552493) 1 NC_016863.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 3552493 rplX 990282003413 rplX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L24 YP_005253898.1 3552179 R 990282 CDS YP_005253899.1 378990735 complement(3552504..3552875) 1 NC_016863.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 3552875 rplN 990282003414 rplN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L14 YP_005253899.1 3552504 R 990282 CDS YP_005253900.1 378990736 complement(3553039..3553293) 1 NC_016863.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 3553293 rpsQ 990282003415 rpsQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S17 YP_005253900.1 3553039 R 990282 CDS YP_005253901.1 378990737 complement(3553293..3553484) 1 NC_016863.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 3553484 rpmC 990282003416 rpmC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L29 YP_005253901.1 3553293 R 990282 CDS YP_005253902.1 378990738 complement(3553484..3553894) 1 NC_016863.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 3553894 rplP 990282003417 rplP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L16 YP_005253902.1 3553484 R 990282 CDS YP_005253903.1 378990739 complement(3553907..3554608) 1 NC_016863.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 3554608 rpsC 990282003418 rpsC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S3 YP_005253903.1 3553907 R 990282 CDS YP_005253904.1 378990740 complement(3554626..3554958) 1 NC_016863.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase; 50S ribosomal protein L22 3554958 rplV 990282003419 rplV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L22 YP_005253904.1 3554626 R 990282 CDS YP_005253905.1 378990741 complement(3554973..3555251) 1 NC_016863.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 3555251 rpsS 990282003420 rpsS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S19 YP_005253905.1 3554973 R 990282 CDS YP_005253906.1 378990742 complement(3555268..3556089) 1 NC_016863.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 3556089 rplB 990282003421 rplB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L2 YP_005253906.1 3555268 R 990282 CDS YP_005253907.1 378990743 complement(3556107..3556409) 1 NC_016863.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 3556409 rplW 990282003422 rplW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L23 YP_005253907.1 3556107 R 990282 CDS YP_005253908.1 378990744 complement(3556406..3557011) 1 NC_016863.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 3557011 rplD 990282003423 rplD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L4 YP_005253908.1 3556406 R 990282 CDS YP_005253909.1 378990745 complement(3557022..3557651) 1 NC_016863.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 3557651 rplC 990282003424 rplC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L3 YP_005253909.1 3557022 R 990282 CDS YP_005253910.1 378990746 complement(3557684..3557995) 1 NC_016863.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in; 30S ribosomal protein S10 3557995 nusE 990282003425 nusE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S10 YP_005253910.1 3557684 R 990282 CDS YP_005253911.1 378990747 3558375..3558842 1 NC_016863.1 similar to Escherichia coli leader peptidase; integral membrane protein (AAC76360.1); leader peptidase HopD 3558842 hopD 990282003426 hopD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 leader peptidase HopD YP_005253911.1 3558375 D 990282 CDS YP_005253912.1 378990748 complement(3558839..3559315) 1 NC_016863.1 iron storage protein; bacterioferritin 3559315 bfr 990282003427 bfr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bacterioferritin YP_005253912.1 3558839 R 990282 CDS YP_005253913.1 378990749 complement(3559388..3559582) 1 NC_016863.1 regulatory or redox component complexing with Bfr in iron storage and mobility (SW:BFD_SALTY); bacterioferritin-associated ferredoxin 3559582 bfd 990282003428 bfd Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bacterioferritin-associated ferredoxin YP_005253913.1 3559388 R 990282 CDS YP_005253914.1 378990750 complement(3559767..3560951) 1 NC_016863.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promot; elongation factor Tu 3560951 tuf 990282003429 tuf Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 elongation factor Tu YP_005253914.1 3559767 R 990282 CDS YP_005253915.1 378990751 complement(3561023..3563137) 1 NC_016863.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3563137 fusA 990282003430 fusA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 elongation factor G YP_005253915.1 3561023 R 990282 CDS YP_005253916.1 378990752 complement(3563234..3563704) 1 NC_016863.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 3563704 rpsG 990282003431 rpsG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S7 YP_005253916.1 3563234 R 990282 CDS YP_005253917.1 378990753 complement(3563800..3564174) 1 NC_016863.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the oth; 30S ribosomal protein S12 3564174 rpsL 990282003432 rpsL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S12 YP_005253917.1 3563800 R 990282 CDS YP_005253918.1 378990754 complement(3564300..3564587) 1 NC_016863.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusB 3564587 yheL 990282003433 yheL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sulfur transfer complex subunit TusB YP_005253918.1 3564300 R 990282 CDS YP_005253919.1 378990755 complement(3564595..3564951) 1 NC_016863.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 3564951 yheM 990282003434 yheM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sulfur relay protein TusC YP_005253919.1 3564595 R 990282 CDS YP_005253920.1 378990756 complement(3564951..3565337) 1 NC_016863.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 3565337 yheN 990282003435 yheN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sulfur transfer complex subunit TusD YP_005253920.1 3564951 R 990282 CDS YP_005253921.1 378990757 complement(3565337..3566059) 1 NC_016863.1 putative regulatory protein 3566059 yheO 990282003436 yheO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005253921.1 3565337 R 990282 CDS YP_005253922.1 378990758 complement(3566336..3567154) 1 NC_016863.1 rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase 3567154 fkpA 990282003437 fkpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 FKBP-type peptidyl-prolyl cis-trans isomerase YP_005253922.1 3566336 R 990282 CDS YP_005253923.1 378990759 3567374..3567592 1 NC_016863.1 similar to Escherichia coli host factor for lysis of phiX174 infection (AAC76373.1); hypothetical protein 3567592 slyX 990282003438 slyX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253923.1 3567374 D 990282 CDS YP_005253924.1 378990760 complement(3567780..3568370) 1 NC_016863.1 rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase 3568370 slyD 990282003439 slyD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 FKBP-type peptidyl-prolyl cis-trans isomerase YP_005253924.1 3567780 R 990282 CDS YP_005253925.1 378990761 complement(3568465..3568665) 1 NC_016863.1 putative cytoplasmic protein 3568665 yheV 990282003440 yheV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253925.1 3568465 R 990282 CDS YP_005253926.1 378990762 complement(3568676..3570481) 1 NC_016863.1 involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB 3570481 kefB 990282003441 kefB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutathione-regulated potassium-efflux system protein KefB YP_005253926.1 3568676 R 990282 CDS YP_005253927.1 378990763 complement(3570481..3571032) 1 NC_016863.1 required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG 3571032 yheR 990282003442 yheR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutathione-regulated potassium-efflux system ancillary protein KefG YP_005253927.1 3570481 R 990282 CDS YP_005253928.1 378990764 3571298..3573205 1 NC_016863.1 similar to Escherichia coli putative ATP-binding component (AAC76377.1); contains duplicated ATPase domain; putative ABC transporter ATP-binding protein 3573205 yheS 990282003443 yheS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter ATP-binding protein YP_005253928.1 3571298 D 990282 CDS YP_005253929.1 378990765 3573368..3573589 1 NC_016863.1 similar to putative ATPase component of ABC transporter with duplicated ATPase domain (Pid: YP_002047483.1).; hypothetical protein 3573589 990282003444 STMUK_3446 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253929.1 3573368 D 990282 CDS YP_005253930.1 378990766 complement(3573591..3573902) 1 NC_016863.1 hypothetical protein 3573902 990282003445 STMUK_3447 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253930.1 3573591 R 990282 CDS YP_005253931.1 378990767 3574100..3575167 1 NC_016863.1 alpha/beta-hydrolase fold; putative hydrolase 3575167 yheT 990282003446 yheT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase YP_005253931.1 3574100 D 990282 CDS YP_005253932.1 378990768 3575164..3575382 1 NC_016863.1 hypothetical protein 3575382 yheU 990282003447 yheU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253932.1 3575164 D 990282 CDS YP_005253933.1 378990769 3575434..3576303 1 NC_016863.1 similar to Escherichia coli probable phosphoribulokinase (AAC76380.1); putative phosphoribulokinase 3576303 prkB 990282003448 prkB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphoribulokinase YP_005253933.1 3575434 D 990282 CDS YP_005253934.1 378990770 complement(3576399..3576803) 1 NC_016863.1 hypothetical protein 3576803 yhfA 990282003449 yhfA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253934.1 3576399 R 990282 CDS YP_005253935.1 378990771 3577111..3577743 1 NC_016863.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3577743 crp 990282003450 crp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cAMP-regulatory protein YP_005253935.1 3577111 D 990282 CDS YP_005253936.1 378990772 3577792..3579879 1 NC_016863.1 putative inner membrane protein 3579879 yhfK 990282003451 yhfK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253936.1 3577792 D 990282 CDS YP_005253937.1 378990773 complement(3579922..3581139) 1 NC_016863.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxo; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 3581139 argD 990282003452 argD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_005253937.1 3579922 R 990282 CDS YP_005253938.1 378990774 complement(3581225..3581788) 1 NC_016863.1 aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II 3581788 pabA 990282003453 pabA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 para-aminobenzoate synthase component II YP_005253938.1 3581225 R 990282 CDS YP_005253939.1 378990775 complement(3581820..3582422) 1 NC_016863.1 cell filamentation protein Fic (SW:FIC_SALTY); stationary phase induced gene; affects cell division; cell filamentation protein Fic 3582422 fic 990282003454 fic Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell filamentation protein Fic YP_005253939.1 3581820 R 990282 CDS YP_005253940.1 378990776 complement(3582412..3582579) 1 NC_016863.1 hypothetical 6.8 kDa protein in fic-ppiA intergenic region (SW:YHFG_SALTY); hypothetical protein 3582579 yhfG 990282003455 yhfG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253940.1 3582412 R 990282 CDS YP_005253941.1 378990777 complement(3582688..3583260) 1 NC_016863.1 peptidyl-prolyl cis-trans isomerase A (SW:PPIA_SALTY); rotamase A; peptidyl-prolyl cis-trans isomerase A 3583260 ppiA 990282003456 ppiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptidyl-prolyl cis-trans isomerase A YP_005253941.1 3582688 R 990282 CDS YP_005253942.1 378990778 3583537..3584718 1 NC_016863.1 similar to Escherichia coli putative transport (AAC76389.1); MFS family; hypothetical protein 3584718 yhfC 990282003457 yhfC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253942.1 3583537 D 990282 CDS YP_005253943.1 378990779 3584981..3587524 1 NC_016863.1 similar to Escherichia coli nitrite reductase-NAD(P)H subunit (AAC76390.1); nitrite reductase large subunit 3587524 nirB 990282003458 nirB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrite reductase large subunit YP_005253943.1 3584981 D 990282 CDS YP_005253944.1 378990780 3587521..3587847 1 NC_016863.1 involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit 3587847 nirD 990282003459 nirD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrite reductase small subunit YP_005253944.1 3587521 D 990282 CDS YP_005253945.1 378990781 3588113..3588922 1 NC_016863.1 member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 3588922 nirC 990282003460 nirC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrite transporter NirC YP_005253945.1 3588113 D 990282 CDS YP_005253946.1 378990782 3588934..3590307 1 NC_016863.1 multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin fro; siroheme synthase 3590307 cysG 990282003461 cysG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 siroheme synthase YP_005253946.1 3588934 D 990282 CDS YP_005253947.1 378990783 3590636..3596530 1 NC_016863.1 putative surface-exposed virulence protein BigA (gi|5081595); putative surface-exposed virulence protein 3596530 bigA 990282003462 bigA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative surface-exposed virulence protein YP_005253947.1 3590636 D 990282 CDS YP_005253948.1 378990784 complement(3596662..3597120) 1 NC_016863.1 transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 3597120 tnpA_6 990282003463 tnpA_6 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transposase for IS200 YP_005253948.1 3596662 R 990282 CDS YP_005253949.1 378990785 3597434..3597604 1 NC_016863.1 putative outer membrane lipoprotein 3597604 yhfL 990282003464 yhfL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005253949.1 3597434 D 990282 CDS YP_005253950.1 378990786 complement(3597749..3598753) 1 NC_016863.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 3598753 trpS 990282003465 trpS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tryptophanyl-tRNA synthetase YP_005253950.1 3597749 R 990282 CDS YP_005253951.1 378990787 complement(3598746..3599504) 1 NC_016863.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 3599504 gph 990282003466 gph Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoglycolate phosphatase YP_005253951.1 3598746 R 990282 CDS YP_005253952.1 378990788 complement(3599497..3600174) 1 NC_016863.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 3600174 rpe 990282003467 rpe Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribulose-phosphate 3-epimerase YP_005253952.1 3599497 R 990282 CDS YP_005253953.1 378990789 complement(3600192..3601028) 1 NC_016863.1 DNA adenine methylase (SW:DMA_SALTY); DNA adenine methylase 3601028 dam 990282003468 dam Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA adenine methylase YP_005253953.1 3600192 R 990282 CDS YP_005253954.1 378990790 complement(3601209..3602486) 1 NC_016863.1 similar to Escherichia coli putative membrane protein; overproduction may interfere with cell division (AAC76413.1); hypothetical protein 3602486 damX 990282003469 damX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253954.1 3601209 R 990282 CDS YP_005253955.1 378990791 complement(3602584..3603672) 1 NC_016863.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 3603672 aroB 990282003470 aroB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-dehydroquinate synthase YP_005253955.1 3602584 R 990282 CDS YP_005253956.1 378990792 complement(3603729..3604250) 1 NC_016863.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 3604250 aroK 990282003471 aroK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 shikimate kinase I YP_005253956.1 3603729 R 990282 CDS YP_005253957.1 378990793 complement(3604715..3605953) 1 NC_016863.1 outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeru; outer membrane porin HofQ 3605953 hofQ 990282003472 hofQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane porin HofQ YP_005253957.1 3604715 R 990282 CDS YP_005253958.1 378990794 complement(3605868..3606269) 1 NC_016863.1 putative inner membrane protein 3606269 yrfA 990282003473 yrfA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253958.1 3605868 R 990282 CDS YP_005253959.1 378990795 complement(3606259..3606732) 1 NC_016863.1 putative inner membrane protein 3606732 yrfB 990282003474 yrfB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253959.1 3606259 R 990282 CDS YP_005253960.1 378990796 complement(3606716..3607255) 1 NC_016863.1 putative inner membrane protein 3607255 yrfC 990282003475 yrfC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253960.1 3606716 R 990282 CDS YP_005253961.1 378990797 complement(3607255..3608034) 1 NC_016863.1 hypothetical protein 3608034 yrfD 990282003476 yrfD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253961.1 3607255 R 990282 CDS YP_005253962.1 378990798 3608131..3610707 1 NC_016863.1 bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the f; peptidoglycan synthetase 3610707 mrcA 990282003477 mrcA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptidoglycan synthetase YP_005253962.1 3608131 D 990282 CDS YP_005253963.1 378990799 complement(3610803..3611399) 1 NC_016863.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 3611399 nudE 990282003478 nudE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ADP-ribose diphosphatase NudE YP_005253963.1 3610803 R 990282 CDS YP_005253964.1 378990800 3611689..3613821 1 NC_016863.1 similar to Escherichia coli putative dehydrogenase (AAC76423.1); putative inner membrane protein 3613821 yrfF 990282003479 yrfF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253964.1 3611689 D 990282 CDS YP_005253965.1 378990801 3613886..3614554 1 NC_016863.1 similar to Escherichia coli putative phosphatase (AAC76424.1); putative hydrolase 3614554 yrfG 990282003480 yrfG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase YP_005253965.1 3613886 D 990282 CDS YP_005253966.1 378990802 3614565..3614966 1 NC_016863.1 predicted small RNA-binding protein; ribosome-associated heat shock protein Hsp15 3614966 yrfH 990282003481 yrfH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribosome-associated heat shock protein Hsp15 YP_005253966.1 3614565 D 990282 CDS YP_005253967.1 378990803 3614985..3615869 1 NC_016863.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone prot; Hsp33-like chaperonin 3615869 hslO 990282003482 hslO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Hsp33-like chaperonin YP_005253967.1 3614985 D 990282 CDS YP_005253968.1 378990804 complement(3615979..3617688) 1 NC_016863.1 similar to Escherichia coli putative transport (AAC76427.1); putative inner membrane protein 3617688 yhgE 990282003483 yhgE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005253968.1 3615979 R 990282 CDS YP_005253969.1 378990805 3618068..3619687 1 NC_016863.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3619687 pckA 990282003484 pckA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoenolpyruvate carboxykinase YP_005253969.1 3618068 D 990282 CDS YP_005253970.1 378990806 complement(3619762..3621114) 1 NC_016863.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 3621114 ompB 990282003485 ompB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 osmolarity sensor protein YP_005253970.1 3619762 R 990282 CDS YP_005253971.1 378990807 complement(3621111..3621830) 1 NC_016863.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of o; osmolarity response regulator 3621830 ompR 990282003486 ompR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 osmolarity response regulator YP_005253971.1 3621111 R 990282 CDS YP_005253972.1 378990808 3622056..3622529 1 NC_016863.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary com; transcription elongation factor GreB 3622529 greB 990282003487 greB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcription elongation factor GreB YP_005253972.1 3622056 D 990282 CDS YP_005253973.1 378990809 3622631..3624958 1 NC_016863.1 putative RNase R 3624958 yhgF 990282003488 yhgF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative RNase R YP_005253973.1 3622631 D 990282 CDS YP_005253974.1 378990810 3625395..3625622 1 NC_016863.1 similar to Escherichia coli ferrous iron transport protein A (AAC76433.1); ferrous iron transport protein A 3625622 feoA 990282003489 feoA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ferrous iron transport protein A YP_005253974.1 3625395 D 990282 CDS YP_005253975.1 378990811 3625641..3627959 1 NC_016863.1 cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 3627959 feoB 990282003490 feoB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ferrous iron transport protein B YP_005253975.1 3625641 D 990282 CDS YP_005253976.1 378990812 3627972..3628208 1 NC_016863.1 putative cytoplasmic protein 3628208 yhgG 990282003491 yhgG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253976.1 3627972 D 990282 CDS YP_005253977.1 378990813 3628443..3629357 1 NC_016863.1 putative cytoplasmic protein 3629357 990282003492 STMUK_3494 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253977.1 3628443 D 990282 CDS YP_005253978.1 378990814 complement(3629393..3630163) 1 NC_016863.1 Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; carboxylesterase BioH 3630163 bioH 990282003493 bioH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 carboxylesterase BioH YP_005253978.1 3629393 R 990282 CDS YP_005253979.1 378990815 3630201..3630884 1 NC_016863.1 involved in high-affinity gluconate transport; gluconate periplasmic binding protein 3630884 yhgH 990282003494 yhgH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 gluconate periplasmic binding protein YP_005253979.1 3630201 D 990282 CDS YP_005253980.1 378990816 3630943..3631518 1 NC_016863.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 3631518 yhgI 990282003495 yhgI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA uptake protein YP_005253980.1 3630943 D 990282 CDS YP_005253981.1 378990817 3631895..3633211 1 NC_016863.1 similar to Escherichia coli high-affinity transport of gluconate/gluconate permease (AAC76440.1); GntP family; GNT I system; high-affinity gluconate permease 3633211 gntT 990282003496 gntT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 high-affinity gluconate permease YP_005253981.1 3631895 D 990282 CDS YP_005253982.1 378990818 complement(3633330..3635408) 1 NC_016863.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 3635408 malQ 990282003497 malQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-alpha-glucanotransferase YP_005253982.1 3633330 R 990282 CDS YP_005253983.1 378990819 complement(3635418..3637811) 1 NC_016863.1 similar to Escherichia coli maltodextrin phosphorylase (AAC76442.1); maltodextrin phosphorylase 3637811 malP 990282003498 malP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 maltodextrin phosphorylase YP_005253983.1 3635418 R 990282 CDS YP_005253984.1 378990820 3638405..3641110 1 NC_016863.1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 3641110 malT 990282003499 malT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator MalT YP_005253984.1 3638405 D 990282 CDS YP_005253985.1 378990821 complement(3641197..3641472) 1 NC_016863.1 putative cytoplasmic protein 3641472 990282003500 STMUK_3502 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253985.1 3641197 R 990282 CDS YP_005253986.1 378990822 complement(3641475..3641735) 1 NC_016863.1 similar to Escherichia coli damage-inducible protein J (AAC73330.1); putative DNA-damage-inducibile protein 3641735 990282003501 STMUK_3503 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA-damage-inducibile protein YP_005253986.1 3641475 R 990282 CDS YP_005253987.1 378990823 complement(3641844..3642863) 1 NC_016863.1 catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; RNA 3'-terminal-phosphate cyclase 3642863 rtcA 990282003502 rtcA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 RNA 3'-terminal-phosphate cyclase YP_005253987.1 3641844 R 990282 CDS YP_005253988.1 378990824 complement(3642867..3644084) 1 NC_016863.1 putative cytoplasmic protein 3644084 rtcB 990282003503 rtcB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005253988.1 3642867 R 990282 CDS YP_005253989.1 378990825 complement(3644429..3645982) 1 NC_016863.1 putative ribonucleoprotein related-protein 3645982 990282003504 STMUK_3506 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ribonucleoprotein related-protein YP_005253989.1 3644429 R 990282 CDS YP_005253990.1 378990826 3646172..3647755 1 NC_016863.1 similar to Escherichia coli putative 2-component regulator (AAC76447.1); sigma N; sigma 54-dependent regulator of rtcBA expression; EBP family; sigma N 3647755 rtcR 990282003505 rtcR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sigma N YP_005253990.1 3646172 D 990282 CDS YP_005253991.1 378990827 complement(3647752..3648510) 1 NC_016863.1 represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; DNA-binding transcriptional repressor GlpR 3648510 glpR 990282003506 glpR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional repressor GlpR YP_005253991.1 3647752 R 990282 CDS YP_005253992.1 378990828 complement(3648604..3649434) 1 NC_016863.1 protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG 3649434 glpG 990282003507 glpG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 intramembrane serine protease GlpG YP_005253992.1 3648604 R 990282 CDS YP_005253993.1 378990829 complement(3649510..3649836) 1 NC_016863.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 3649836 glpE 990282003508 glpE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiosulfate sulfurtransferase YP_005253993.1 3649510 R 990282 CDS YP_005253994.1 378990830 3650035..3651543 1 NC_016863.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the; glycerol-3-phosphate dehydrogenase 3651543 glpD 990282003509 glpD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycerol-3-phosphate dehydrogenase YP_005253994.1 3650035 D 990282 CDS YP_005253995.1 378990831 complement(3651590..3652135) 1 NC_016863.1 hypothetical protein 3652135 990282003510 STMUK_3512 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253995.1 3651590 R 990282 CDS YP_005253996.1 378990832 complement(3652145..3653704) 1 NC_016863.1 putative periplasmic phosphate-binding protein 3653704 990282003511 STMUK_3513 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative periplasmic phosphate-binding protein YP_005253996.1 3652145 R 990282 CDS YP_005253997.1 378990833 complement(3653798..3654907) 1 NC_016863.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 3654907 gldA 990282003512 gldA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycerol dehydrogenase YP_005253997.1 3653798 R 990282 CDS YP_005253998.1 378990834 3655248..3656579 1 NC_016863.1 similar to hypothetical protein SPAB_04385 (Pid: YP_001590534.1).; hypothetical protein 3656579 990282003513 STMUK_3515 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005253998.1 3655248 D 990282 CDS YP_005253999.1 378990835 3656576..3658291 1 NC_016863.1 similar to Escherichia coli putative dehydratase (AAC73372.1); putative dihydroxyacid dehydratase 3658291 990282003514 STMUK_3516 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dihydroxyacid dehydratase YP_005253999.1 3656576 D 990282 CDS YP_005254000.1 378990836 3658335..3659240 1 NC_016863.1 similar to Escherichia coli putative lyase/synthase (AAC73371.1); dihydrodipicolinate synthase 3659240 990282003515 STMUK_3517 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dihydrodipicolinate synthase YP_005254000.1 3658335 D 990282 CDS YP_005254001.1 378990837 complement(3659284..3660039) 1 NC_016863.1 similar to Escherichia coli putative regulator (AAC75308.1); putative transcriptional regulator 3660039 990282003516 STMUK_3518 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254001.1 3659284 R 990282 CDS YP_005254002.1 378990838 complement(3660217..3662664) 1 NC_016863.1 similar to Escherichia coli glycogen phosphorylase (AAC76453.1); glycogen phosphorylase 3662664 glgP 990282003517 glgP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycogen phosphorylase YP_005254002.1 3660217 R 990282 CDS YP_005254003.1 378990839 complement(3662684..3664117) 1 NC_016863.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 3664117 glgA 990282003518 glgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycogen synthase YP_005254003.1 3662684 R 990282 CDS YP_005254004.1 378990840 complement(3664117..3665412) 1 NC_016863.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 3665412 glgC 990282003519 glgC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucose-1-phosphate adenylyltransferase YP_005254004.1 3664117 R 990282 CDS YP_005254005.1 378990841 complement(3665427..3667403) 1 NC_016863.1 catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; glycogen debranching protein 3667403 glgX 990282003520 glgX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycogen debranching protein YP_005254005.1 3665427 R 990282 CDS YP_005254006.1 378990842 complement(3667400..3669586) 1 NC_016863.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 3669586 glgB 990282003521 glgB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycogen branching protein YP_005254006.1 3667400 R 990282 CDS YP_005254007.1 378990843 complement(3669933..3671039) 1 NC_016863.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 3671039 asd 990282003522 asd Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aspartate-semialdehyde dehydrogenase YP_005254007.1 3669933 R 990282 CDS YP_005254008.1 378990844 3671166..3671546 1 NC_016863.1 similar to E. coli orf, hypothetical protein(AAC76459.1); Blastp hit to AAC76459.1 (197 aa); putative inner membrane protein 3671546 990282003523 STMUK_3525 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254008.1 3671166 D 990282 CDS YP_005254009.1 378990845 complement(3671463..3672803) 1 NC_016863.1 similar to Escherichia coli low-affinity gluconate transport permease protein, interrupted (AAC76461.1); low affinity gluconate transporter 3672803 gntU 990282003524 gntU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 low affinity gluconate transporter YP_005254009.1 3671463 R 990282 CDS YP_005254010.1 378990846 complement(3672800..3673333) 1 NC_016863.1 thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase 3673333 gntK 990282003525 gntK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 gluconate kinase YP_005254010.1 3672800 R 990282 CDS YP_005254011.1 378990847 complement(3673472..3674467) 1 NC_016863.1 similar to Escherichia coli regulator of gluconate operon (AAC76463.1); gntUKR (GalR/LacI familiy; gluconate operon transcriptional repressor 3674467 gntR 990282003526 gntR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 gluconate operon transcriptional repressor YP_005254011.1 3673472 R 990282 CDS YP_005254012.1 378990848 complement(3674597..3675292) 1 NC_016863.1 putative cytoplasmic protein 3675292 yhhW 990282003527 yhhW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254012.1 3674597 R 990282 CDS YP_005254013.1 378990849 complement(3675416..3676453) 1 NC_016863.1 similar to Escherichia coli putative regulator (AAC76465.1); putative dehydrogenase 3676453 yhhX 990282003528 yhhX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dehydrogenase YP_005254013.1 3675416 R 990282 CDS YP_005254014.1 378990850 3676922..3677410 1 NC_016863.1 YhhY; regulated by the fur regulator; unknown function; putative acetyltransferase YhhY 3677410 yhhY 990282003529 yhhY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acetyltransferase YhhY YP_005254014.1 3676922 D 990282 CDS YP_005254015.1 378990851 3677675..3678889 1 NC_016863.1 ORF408 (gi|4456874); regulator of sugar metabolism; putative transcriptional regulator 3678889 990282003530 STMUK_3532 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254015.1 3677675 D 990282 CDS YP_005254016.1 378990852 3678905..3679666 1 NC_016863.1 ORF 245 (gi|4456875); similar to STM1381; putative cytoplasmic protein 3679666 990282003531 STMUK_3533 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254016.1 3678905 D 990282 CDS YP_005254017.1 378990853 3679720..3680691 1 NC_016863.1 putative inner membrane protein 3680691 990282003532 STMUK_3534 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254017.1 3679720 D 990282 CDS YP_005254018.1 378990854 3680688..3681722 1 NC_016863.1 similar to Escherichia coli putative hydrolase (AAC76404.1); putative phosphotriesterase 3681722 990282003533 STMUK_3535 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphotriesterase YP_005254018.1 3680688 D 990282 CDS YP_005254019.1 378990855 complement(3681767..3683509) 1 NC_016863.1 periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptid; gamma-glutamyltranspeptidase 3683509 ggt 990282003534 ggt Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 gamma-glutamyltranspeptidase YP_005254019.1 3681767 R 990282 CDS YP_005254020.1 378990856 3683635..3684051 1 NC_016863.1 hypothetical protein 3684051 yhhA 990282003535 yhhA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254020.1 3683635 D 990282 CDS YP_005254021.1 378990857 complement(3684064..3684804) 1 NC_016863.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase 3684804 ugpQ 990282003536 ugpQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycerophosphodiester phosphodiesterase YP_005254021.1 3684064 R 990282 CDS YP_005254022.1 378990858 complement(3684801..3685871) 1 NC_016863.1 part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit 3685871 ugpC 990282003537 ugpC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycerol-3-phosphate transporter ATP-binding subunit YP_005254022.1 3684801 R 990282 CDS YP_005254023.1 378990859 complement(3685873..3686718) 1 NC_016863.1 with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein 3686718 ugpE 990282003538 ugpE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycerol-3-phosphate transporter membrane protein YP_005254023.1 3685873 R 990282 CDS YP_005254024.1 378990860 complement(3686715..3687602) 1 NC_016863.1 with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease 3687602 ugpA 990282003539 ugpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycerol-3-phosphate transporter permease YP_005254024.1 3686715 R 990282 CDS YP_005254025.1 378990861 complement(3687666..3688982) 1 NC_016863.1 with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein 3688982 ugpB 990282003540 ugpB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycerol-3-phosphate transporter periplasmic binding protein YP_005254025.1 3687666 R 990282 CDS YP_005254026.1 378990862 complement(3689241..3689609) 1 NC_016863.1 similar to death-on-curing protein of phage P1; death-on-curing protein 3689609 990282003541 STMUK_3543 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 death-on-curing protein YP_005254026.1 3689241 R 990282 CDS YP_005254027.1 378990863 complement(3689606..3689833) 1 NC_016863.1 hypothetical protein in livF 5'region (SW:YHHV_SALTY); putative cytoplasmic protein 3689833 yhhV 990282003542 yhhV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254027.1 3689606 R 990282 CDS YP_005254028.1 378990864 complement(3689959..3690672) 1 NC_016863.1 with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 3690672 livF 990282003543 livF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 leucine/isoleucine/valine transporter ATP-binding subunit YP_005254028.1 3689959 R 990282 CDS YP_005254029.1 378990865 complement(3690674..3691441) 1 NC_016863.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 3691441 livG 990282003544 livG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 leucine/isoleucine/valine transporter ATP-binding subunit YP_005254029.1 3690674 R 990282 CDS YP_005254030.1 378990866 complement(3691438..3692715) 1 NC_016863.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit 3692715 livM 990282003545 livM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 leucine/isoleucine/valine transporter permease subunit YP_005254030.1 3691438 R 990282 CDS YP_005254031.1 378990867 complement(3692712..3693638) 1 NC_016863.1 LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease subunit LivH 3693638 livH 990282003546 livH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 branched-chain amino acid transporter permease subunit LivH YP_005254031.1 3692712 R 990282 CDS YP_005254032.1 378990868 complement(3693698..3694807) 1 NC_016863.1 leucine-specific binding protein precursor; LS-BP (SW:LIVK_SALTY); ABC superfamily binding protein; high-affinity branched-chain amino acid transporter 3694807 livK 990282003547 livK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 high-affinity branched-chain amino acid transporter YP_005254032.1 3693698 R 990282 CDS YP_005254033.1 378990869 3695229..3695612 1 NC_016863.1 putative acetyltransferase 3695612 yhhK 990282003548 yhhK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acetyltransferase YP_005254033.1 3695229 D 990282 CDS YP_005254034.1 378990870 3695590..3695724 1 NC_016863.1 putative cytoplasmic protein 3695724 990282003549 STMUK_3551 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254034.1 3695590 D 990282 CDS YP_005254035.1 378990871 complement(3695807..3696904) 1 NC_016863.1 leu/ile/val/thr-binding protein precursor; LIVT-BP (SW:LIVJ_SALTY); ABC superfamily binding protein; high-affinity branched-chain amino acid transporter 3696904 livJ 990282003550 livJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 high-affinity branched-chain amino acid transporter YP_005254035.1 3695807 R 990282 CDS YP_005254036.1 378990872 complement(3697232..3698086) 1 NC_016863.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 3698086 rpoH 990282003551 rpoH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 RNA polymerase factor sigma-32 YP_005254036.1 3697232 R 990282 CDS YP_005254037.1 378990873 complement(3698332..3699387) 1 NC_016863.1 putative ABC transporter, membrane protein; cell division protein FtsX 3699387 ftsX 990282003552 ftsX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division protein FtsX YP_005254037.1 3698332 R 990282 CDS YP_005254038.1 378990874 complement(3699380..3700048) 1 NC_016863.1 putative ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; cell division protein FtsE 3700048 ftsE 990282003553 ftsE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division protein FtsE YP_005254038.1 3699380 R 990282 CDS YP_005254039.1 378990875 complement(3700051..3701526) 1 NC_016863.1 signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; cell division protein FtsY 3701526 ftsY 990282003554 ftsY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division protein FtsY YP_005254039.1 3700051 R 990282 CDS YP_005254040.1 378990876 3701652..3702248 1 NC_016863.1 catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 3702248 rsmD 990282003555 rsmD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 16S rRNA m(2)G966-methyltransferase YP_005254040.1 3701652 D 990282 CDS YP_005254041.1 378990877 3702235..3702507 1 NC_016863.1 hypothetical protein 3702507 yhhL 990282003556 yhhL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254041.1 3702235 D 990282 CDS YP_005254042.1 378990878 complement(3702529..3702900) 1 NC_016863.1 similar to Escherichia coli putative receptor (AAC76492.1); putative inner membrane protein 3702900 yhhM 990282003557 yhhM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254042.1 3702529 R 990282 CDS YP_005254043.1 378990879 3703042..3703668 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC76493.1); putative inner membrane protein 3703668 yhhN 990282003558 yhhN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254043.1 3703042 D 990282 CDS YP_005254044.1 378990880 3703749..3705947 1 NC_016863.1 P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 3705947 zntA 990282003559 zntA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 zinc/cadmium/mercury/lead-transporting ATPase YP_005254044.1 3703749 D 990282 CDS YP_005254045.1 378990881 3706147..3707790 1 NC_016863.1 methyl-accepting chemotaxis citrate transducer (citrate chemoreceptorprotein) (SW:MCPC_SALTY); methyl-accepting transmembrane citrate/phenol chemoreceptor 3707790 tcp 990282003560 tcp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 methyl-accepting transmembrane citrate/phenol chemoreceptor YP_005254045.1 3706147 D 990282 CDS YP_005254046.1 378990882 complement(3707814..3708059) 1 NC_016863.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 3708059 yhhP 990282003561 yhhP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sulfur transfer protein SirA YP_005254046.1 3707814 R 990282 CDS YP_005254047.1 378990883 3708229..3708894 1 NC_016863.1 hypothetical protein 3708894 yhhQ 990282003562 yhhQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254047.1 3708229 D 990282 CDS YP_005254048.1 378990884 3708967..3709524 1 NC_016863.1 hypothetical protein 3709524 990282003563 STMUK_3565 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254048.1 3708967 D 990282 CDS YP_005254049.1 378990885 complement(3709528..3710787) 1 NC_016863.1 similar to Escherichia coli putative transport (AAC76498.1); MFS family; major facilitator superfamily transporter 3710787 yhhS 990282003564 yhhS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 major facilitator superfamily transporter YP_005254049.1 3709528 R 990282 CDS YP_005254050.1 378990886 3710877..3711926 1 NC_016863.1 PerM family; putative permease 3711926 yhhT 990282003565 yhhT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005254050.1 3710877 D 990282 CDS YP_005254051.1 378990887 3711978..3712556 1 NC_016863.1 holo-(acyl carrier protein) synthase 2 3712556 acpT 990282003566 acpT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 holo-(acyl carrier protein) synthase 2 YP_005254051.1 3711978 D 990282 CDS YP_005254052.1 378990888 3712648..3713049 1 NC_016863.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3713049 nikR 990282003567 nikR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nickel responsive regulator YP_005254052.1 3712648 D 990282 CDS YP_005254053.1 378990889 complement(3713139..3714263) 1 NC_016863.1 similar to Escherichia coli putative transporter (AAC76510.1); putative ABC superfamily; ATP-binding/membrane transport protein; putative ABC transport protein 3714263 yhhJ 990282003568 yhhJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transport protein YP_005254053.1 3713139 R 990282 CDS YP_005254054.1 378990890 complement(3714263..3716953) 1 NC_016863.1 similar to Escherichia coli putative ATP-binding component of a transport system; fragment 1 (AAC76511.1); permease component; putative ABC-type multidrug transport system ATPase component 3716953 yhiH 990282003569 yhiH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type multidrug transport system ATPase component YP_005254054.1 3714263 R 990282 CDS YP_005254055.1 378990891 complement(3717001..3718068) 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC76512.1); hypothetical protein 3718068 yhiI 990282003570 yhiI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254055.1 3717001 R 990282 CDS YP_005254056.1 378990892 complement(3718374..3719570) 1 NC_016863.1 hypothetical protein 3719570 yhiN 990282003571 yhiN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254056.1 3718374 R 990282 CDS YP_005254057.1 378990893 3719801..3721297 1 NC_016863.1 similar to Escherichia coli low-affinity phosphate transport (AAC76518.1); PiT family; low-affinity phosphate transporter 3721297 pitA 990282003572 pitA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 low-affinity phosphate transporter YP_005254057.1 3719801 D 990282 CDS YP_005254058.1 378990894 complement(3721437..3721772) 1 NC_016863.1 ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB 3721772 uspB 990282003573 uspB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 universal stress protein UspB YP_005254058.1 3721437 R 990282 CDS YP_005254059.1 378990895 3722160..3722594 1 NC_016863.1 similar to Escherichia coli universal stress protein; broad regulatory function (AAC76520.1); universal stress protein A 3722594 uspA 990282003574 uspA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 universal stress protein A YP_005254059.1 3722160 D 990282 CDS YP_005254060.1 378990896 3722919..3724391 1 NC_016863.1 member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; inner membrane transporter YhiP 3724391 yhiP 990282003575 yhiP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 inner membrane transporter YhiP YP_005254060.1 3722919 D 990282 CDS YP_005254061.1 378990897 complement(3724483..3725241) 1 NC_016863.1 predicted SAM-dependent methyltransferase; putative methyltransferase 3725241 yhiQ 990282003576 yhiQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative methyltransferase YP_005254061.1 3724483 R 990282 CDS YP_005254062.1 378990898 complement(3725248..3727290) 1 NC_016863.1 oligopeptidase A (SW:OPDA_SALTY); oligopeptidase A 3727290 prlC 990282003577 prlC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 oligopeptidase A YP_005254062.1 3725248 R 990282 CDS YP_005254063.1 378990899 complement(3727472..3728743) 1 NC_016863.1 putative phosphatase 3728743 990282003578 STMUK_3580 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphatase YP_005254063.1 3727472 R 990282 CDS YP_005254064.1 378990900 3728954..3729796 1 NC_016863.1 putative cytoplasmic protein 3729796 yhiR 990282003579 yhiR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254064.1 3728954 D 990282 CDS YP_005254065.1 378990901 3729901..3731253 1 NC_016863.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 3731253 gor 990282003580 gor Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutathione reductase YP_005254065.1 3729901 D 990282 CDS YP_005254066.1 378990902 complement(3731300..3732343) 1 NC_016863.1 similar to Escherichia coli periplasmic L-asparaginase II (AAC75994.1); putative L-asparaginase 3732343 990282003581 STMUK_3583 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative L-asparaginase YP_005254066.1 3731300 R 990282 CDS YP_005254067.1 378990903 complement(3732402..3733721) 1 NC_016863.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 3733721 990282003582 STMUK_3584 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anaerobic C4-dicarboxylate transporter YP_005254067.1 3732402 R 990282 CDS YP_005254068.1 378990904 complement(3733775..3734620) 1 NC_016863.1 similar to Escherichia coli putative kinase (AAC76399.1); ribokinase family; putative sugar kinase 3734620 990282003583 STMUK_3585 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar kinase YP_005254068.1 3733775 R 990282 CDS YP_005254069.1 378990905 complement(3734684..3735661) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC76396.1); putative phosphosugar isomerase 3735661 990282003584 STMUK_3586 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphosugar isomerase YP_005254069.1 3734684 R 990282 CDS YP_005254070.1 378990906 complement(3735837..3736556) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator (AAC76400.1); GntR family; putative regulatory protein 3736556 990282003585 STMUK_3587 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005254070.1 3735837 R 990282 CDS YP_005254071.1 378990907 3736882..3738531 1 NC_016863.1 cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 3738531 treF 990282003586 treF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 trehalase YP_005254071.1 3736882 D 990282 CDS YP_005254072.1 378990908 complement(3738544..3740133) 1 NC_016863.1 putative inner membrane protein 3740133 990282003587 STMUK_3589 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254072.1 3738544 R 990282 CDS YP_005254073.1 378990909 3740414..3740770 1 NC_016863.1 putative phage endolysin 3740770 990282003588 STMUK_3590 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage endolysin YP_005254073.1 3740414 D 990282 CDS YP_005254074.1 378990910 complement(3740776..3741378) 1 NC_016863.1 similar to Escherichia coli putative regulator (AAC76545.1); LuxR/UhpA family; putative transcriptional regulator 3741378 yhjB 990282003589 yhjB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254074.1 3740776 R 990282 CDS YP_005254075.1 378990911 3742009..3742908 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76546.1); LysR family; putative transcriptional regulator 3742908 yhjC 990282003590 yhjC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254075.1 3742009 D 990282 CDS YP_005254076.1 378990912 3742981..3744009 1 NC_016863.1 putative tRNA-processing ribonuclease 3744009 yhjD 990282003591 yhjD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative tRNA-processing ribonuclease YP_005254076.1 3742981 D 990282 CDS YP_005254077.1 378990913 3744360..3745682 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC76548.1); MFS family; putative transport protein 3745682 yhjE 990282003592 yhjE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005254077.1 3744360 D 990282 CDS YP_005254078.1 378990914 complement(3745722..3747782) 1 NC_016863.1 putative inner membrane protein 3747782 yhjG 990282003593 yhjG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254078.1 3745722 R 990282 CDS YP_005254079.1 378990915 complement(3747892..3748659) 1 NC_016863.1 in Escherichia coli this protein is involved in flagellar function; EAL domain-containing protein 3748659 yhjH 990282003594 yhjH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 EAL domain-containing protein YP_005254079.1 3747892 R 990282 CDS YP_005254080.1 378990916 3748888..3749817 1 NC_016863.1 similar to Escherichia coli ketodeoxygluconokinase (AAC76551.1); ketodeoxygluconokinase 3749817 kdgK 990282003595 kdgK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ketodeoxygluconokinase YP_005254080.1 3748888 D 990282 CDS YP_005254081.1 378990917 complement(3749871..3751358) 1 NC_016863.1 protein YhjJ precursor (SW:YHJJ_SALTY); putative Zn-dependent peptidase 3751358 yhjJ 990282003596 yhjJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative Zn-dependent peptidase YP_005254081.1 3749871 R 990282 CDS YP_005254082.1 378990918 complement(3751578..3752864) 1 NC_016863.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 3752864 dctA 990282003597 dctA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 C4-dicarboxylate transporter DctA YP_005254082.1 3751578 R 990282 CDS YP_005254083.1 378990919 complement(3753022..3754995) 1 NC_016863.1 HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a putative p; putative phosphodiesterase 3754995 yhjK 990282003598 yhjK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphodiesterase YP_005254083.1 3753022 R 990282 CDS YP_005254084.1 378990920 complement(3755202..3758744) 1 NC_016863.1 cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC 3758744 bscC 990282003599 bscC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cellulose synthase subunit BcsC YP_005254084.1 3755202 R 990282 CDS YP_005254085.1 378990921 complement(3758726..3759835) 1 NC_016863.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 3759835 990282003600 STMUK_3602 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 endo-1,4-D-glucanase YP_005254085.1 3758726 R 990282 CDS YP_005254086.1 378990922 complement(3759839..3762139) 1 NC_016863.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 3762139 yhjN 990282003601 yhjN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cellulose synthase regulator protein YP_005254086.1 3759839 R 990282 CDS YP_005254087.1 378990923 complement(3762150..3764774) 1 NC_016863.1 polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit 3764774 bcsA 990282003602 bcsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cellulose synthase catalytic subunit YP_005254087.1 3762150 R 990282 CDS YP_005254088.1 378990924 complement(3764771..3765523) 1 NC_016863.1 cell division protein 3765523 yhjQ 990282003603 yhjQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division protein YP_005254088.1 3764771 R 990282 CDS YP_005254089.1 378990925 complement(3765524..3765727) 1 NC_016863.1 putative cytoplasmic protein 3765727 yhjR 990282003604 yhjR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254089.1 3765524 R 990282 CDS YP_005254090.1 378990926 3765972..3767543 1 NC_016863.1 similar to Escherichia coli putative protease (AAC76561.1); putative cytoplasmic protein 3767543 yhjS 990282003605 yhjS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254090.1 3765972 D 990282 CDS YP_005254091.1 378990927 3767540..3767731 1 NC_016863.1 putative inner membrane protein 3767731 yhjT 990282003606 yhjT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254091.1 3767540 D 990282 CDS YP_005254092.1 378990928 3767728..3769407 1 NC_016863.1 putative inner membrane protein 3769407 yhjU 990282003607 yhjU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254092.1 3767728 D 990282 CDS YP_005254093.1 378990929 complement(3769489..3769596) 1 NC_016863.1 similar to hypothetical protein SPAB_04503 (Pid: YP_001590651.1).; hypothetical protein 3769596 990282003608 STMUK_3610 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254093.1 3769489 R 990282 CDS YP_005254094.1 378990930 3769981..3770121 1 NC_016863.1 cystathionine gamma-synthase 3770121 990282003609 STMUK_3611 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cystathionine gamma-synthase YP_005254094.1 3769981 D 990282 CDS YP_005254095.1 378990931 3770239..3771537 1 NC_016863.1 similar to Escherichia coli putative transporter protein (AAC76564.1); HAAAP family; putative transport protein 3771537 yhjV 990282003610 yhjV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005254095.1 3770239 D 990282 CDS YP_005254096.1 378990932 complement(3771638..3772651) 1 NC_016863.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 3772651 dppF 990282003611 dppF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dipeptide transporter ATP-binding subunit YP_005254096.1 3771638 R 990282 CDS YP_005254097.1 378990933 complement(3772648..3773631) 1 NC_016863.1 DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit 3773631 dppD 990282003612 dppD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dipeptide transporter ATP-binding subunit YP_005254097.1 3772648 R 990282 CDS YP_005254098.1 378990934 complement(3773642..3774544) 1 NC_016863.1 similar to Escherichia coli dipeptide transport system permease protein 2 (AAC76567.1); ABC superfamily membrane protein; dipeptide transporter 3774544 dppC 990282003613 dppC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dipeptide transporter YP_005254098.1 3773642 R 990282 CDS YP_005254099.1 378990935 complement(3774554..3775573) 1 NC_016863.1 transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB 3775573 dppB 990282003614 dppB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dipeptide transporter permease DppB YP_005254099.1 3774554 R 990282 CDS YP_005254100.1 378990936 complement(3775730..3777337) 1 NC_016863.1 similar to Escherichia coli dipeptide transport protein (AAC76569.1); ABC superfamily periplasmic protein; dipeptide transport protein 3777337 dppA 990282003615 dppA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dipeptide transport protein YP_005254100.1 3775730 R 990282 CDS YP_005254101.1 378990937 complement(3777893..3779218) 1 NC_016863.1 similar to Escherichia coli putative permease (AAC75926.1); putative xanthine permease 3779218 990282003616 STMUK_3618 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative xanthine permease YP_005254101.1 3777893 R 990282 CDS YP_005254102.1 378990938 complement(3779276..3780400) 1 NC_016863.1 contains putative PQQ enzyme repeat; hypothetical protein 3780400 990282003617 STMUK_3619 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254102.1 3779276 R 990282 CDS YP_005254103.1 378990939 3780550..3781557 1 NC_016863.1 similar to Escherichia coli regulator for rbs operon (AAC76776.1); LacI family; putative regulatory protein 3781557 990282003618 STMUK_3620 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005254103.1 3780550 D 990282 CDS YP_005254104.1 378990940 complement(3781884..3783575) 1 NC_016863.1 catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase 3783575 yhjW 990282003620 yhjW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoethanolamine transferase YP_005254104.1 3781884 R 990282 CDS YP_005254105.1 378990941 complement(3783793..3784320) 1 NC_016863.1 PFE protein precursor (SW:LPFE_SALTY); long polar fimbrial minor protein 3784320 lpfE 990282003621 lpfE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 long polar fimbrial minor protein YP_005254105.1 3783793 R 990282 CDS YP_005254106.1 378990942 complement(3785413..3787941) 1 NC_016863.1 outer membrane usher protein LpfC precursor (SW:LPFC_SALTY); long polar fimbrial outer membrane usher protein 3787941 lpfC 990282003623 lpfC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 long polar fimbrial outer membrane usher protein YP_005254106.1 3785413 R 990282 CDS YP_005254107.1 378990943 complement(3787964..3788662) 1 NC_016863.1 chaperone protein LpfB precursor (SW:LPFB_SALTY); long polar fimbrial chaperone precursor 3788662 lpfB 990282003624 lpfB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 long polar fimbrial chaperone precursor YP_005254107.1 3787964 R 990282 CDS YP_005254108.1 378990944 complement(3788747..3789283) 1 NC_016863.1 long polar fimbrial protein A precursor (SW:LPFA_SALTY); long polar fimbrial protein A precursor 3789283 lpfA 990282003625 lpfA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 long polar fimbrial protein A precursor YP_005254108.1 3788747 R 990282 CDS YP_005254109.1 378990945 complement(3789789..3790493) 1 NC_016863.1 similar to Escherichia coli putative lipase (AAC76572.1); putative lipase 3790493 yhjY 990282003626 yhjY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative lipase YP_005254109.1 3789789 R 990282 CDS YP_005254110.1 378990946 3790650..3791231 1 NC_016863.1 constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine; 3-methyladenine DNA glycosylase 3791231 tag 990282003627 tag Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-methyladenine DNA glycosylase YP_005254110.1 3790650 D 990282 CDS YP_005254111.1 378990947 3791209..3791649 1 NC_016863.1 hypothetical protein 3791649 yiaC 990282003628 yiaC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254111.1 3791209 D 990282 CDS YP_005254112.1 378990948 complement(3791618..3793951) 1 NC_016863.1 similar to Escherichia coli biotin sulfoxide reductase (AAC76575.1); biotin sulfoxide reductase 3793951 bisC 990282003629 bisC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 biotin sulfoxide reductase YP_005254112.1 3791618 R 990282 CDS YP_005254113.1 378990949 3794104..3794766 1 NC_016863.1 similar to Escherichia coli putative outer membrane protein (AAC76576.1); putative outer membrane lipoprotein 3794766 yiaD 990282003630 yiaD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005254113.1 3794104 D 990282 CDS YP_005254114.1 378990950 3794985..3795959 1 NC_016863.1 Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 3795959 yiaE 990282003631 yiaE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-hydroxyacid dehydrogenase YP_005254114.1 3794985 D 990282 CDS YP_005254115.1 378990951 complement(3796009..3796719) 1 NC_016863.1 putative outer membrane lipoprotein 3796719 yiaF 990282003632 yiaF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005254115.1 3796009 R 990282 CDS YP_005254116.1 378990952 3797158..3797448 1 NC_016863.1 putative transcriptional regulator 3797448 yiaG 990282003633 yiaG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254116.1 3797158 D 990282 CDS YP_005254117.1 378990953 3797737..3797949 1 NC_016863.1 cold shock protein CspA (SW:CSPA_SALTY); 7.4 kDa; transcriptional activator of hns; major cold shock protein 3797949 cspA 990282003634 cspA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 major cold shock protein YP_005254117.1 3797737 D 990282 CDS YP_005254118.1 378990954 3798123..3798662 1 NC_016863.1 hypothetical protein 3798662 990282003635 STMUK_3637 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254118.1 3798123 D 990282 CDS YP_005254119.1 378990955 complement(3799034..3799519) 1 NC_016863.1 putative acetyltransferase 3799519 990282003636 STMUK_3638 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acetyltransferase YP_005254119.1 3799034 R 990282 CDS YP_005254120.1 378990956 complement(3799507..3799794) 1 NC_016863.1 putative cytoplasmic protein 3799794 990282003637 STMUK_3639 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254120.1 3799507 R 990282 CDS YP_005254121.1 378990957 complement(3799972..3800439) 1 NC_016863.1 putative acetyltransferase 3800439 990282003638 STMUK_3640 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acetyltransferase YP_005254121.1 3799972 R 990282 CDS YP_005254122.1 378990958 complement(3801068..3803137) 1 NC_016863.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the; glycyl-tRNA synthetase subunit beta 3803137 glyS 990282003639 glyS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycyl-tRNA synthetase subunit beta YP_005254122.1 3801068 R 990282 CDS YP_005254123.1 378990959 complement(3803147..3804058) 1 NC_016863.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of t; glycyl-tRNA synthetase subunit alpha 3804058 glyQ 990282003640 glyQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycyl-tRNA synthetase subunit alpha YP_005254123.1 3803147 R 990282 CDS YP_005254124.1 378990960 complement(3804197..3804499) 1 NC_016863.1 putative outer membrane lipoprotein 3804499 990282003641 STMUK_3643 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005254124.1 3804197 R 990282 CDS YP_005254125.1 378990961 3804665..3805660 1 NC_016863.1 putative inner membrane protein 3805660 yiaH 990282003642 yiaH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254125.1 3804665 D 990282 CDS YP_005254126.1 378990962 complement(3805683..3806036) 1 NC_016863.1 putative inner membrane protein 3806036 yiaB 990282003643 yiaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254126.1 3805683 R 990282 CDS YP_005254127.1 378990963 complement(3806211..3807665) 1 NC_016863.1 similar to Escherichia coli xylulokinase (AAC76588.1); xylulokinase 3807665 xylB 990282003644 xylB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 xylulokinase YP_005254127.1 3806211 R 990282 CDS YP_005254128.1 378990964 complement(3807765..3809087) 1 NC_016863.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 3809087 xylA 990282003645 xylA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 xylose isomerase YP_005254128.1 3807765 R 990282 CDS YP_005254129.1 378990965 3809450..3810628 1 NC_016863.1 similar to Escherichia coli putative regulator of xyl operon (AAC76593.1); AraC/XylS family; xylose operon regulatory protein 3810628 xylR 990282003646 xylR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 xylose operon regulatory protein YP_005254129.1 3809450 D 990282 CDS YP_005254130.1 378990966 complement(3810689..3811513) 1 NC_016863.1 similar to Escherichia coli putative ATP-binding protein (AAC76594.1); hypothetical protein 3811513 bax 990282003647 bax Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254130.1 3810689 R 990282 CDS YP_005254131.1 378990967 3811829..3813856 1 NC_016863.1 periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; periplasmic alpha-amylase 3813856 malS 990282003648 malS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 periplasmic alpha-amylase YP_005254131.1 3811829 D 990282 CDS YP_005254132.1 378990968 3814030..3815280 1 NC_016863.1 transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase 3815280 avtA 990282003649 avtA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 valine--pyruvate transaminase YP_005254132.1 3814030 D 990282 CDS YP_005254133.1 378990969 complement(3815317..3815790) 1 NC_016863.1 putative oxidoreductase 3815790 ysaA 990282003650 ysaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidoreductase YP_005254133.1 3815317 R 990282 CDS YP_005254134.1 378990970 complement(3815907..3816707) 1 NC_016863.1 similar to Escherichia coli putative regulator (AAC76598.1); IclR family; transcriptional repressor 3816707 yiaJ 990282003651 yiaJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional repressor YP_005254134.1 3815907 R 990282 CDS YP_005254135.1 378990971 3816937..3817935 1 NC_016863.1 NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; 2,3-diketo-L-gulonate reductase 3817935 yiaK 990282003652 yiaK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2,3-diketo-L-gulonate reductase YP_005254135.1 3816937 D 990282 CDS YP_005254136.1 378990972 3817947..3818411 1 NC_016863.1 similar to Escherichia coli putative lipase (AAC76600.1); putative cytoplasmic protein 3818411 yiaL 990282003653 yiaL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254136.1 3817947 D 990282 CDS YP_005254137.1 378990973 3818435..3819367 1 NC_016863.1 similar to CheA; putative chemotaxis protein 3819367 990282003654 STMUK_3656 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative chemotaxis protein YP_005254137.1 3818435 D 990282 CDS YP_005254138.1 378990974 3819506..3819979 1 NC_016863.1 membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO; 2,3-diketo-L-gulonate TRAP transporter small permease 3819979 yiaM 990282003655 yiaM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2,3-diketo-L-gulonate TRAP transporter small permease YP_005254138.1 3819506 D 990282 CDS YP_005254139.1 378990975 3819982..3821259 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC76602.1); DedA family; hypothetical protein 3821259 yiaN 990282003656 yiaN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254139.1 3819982 D 990282 CDS YP_005254140.1 378990976 3821271..3822257 1 NC_016863.1 similar to Escherichia coli putative solute-binding transport protein (AAC76603.1); putative periplasmic dicarboxylate-binding protein 3822257 yiaO 990282003657 yiaO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative periplasmic dicarboxylate-binding protein YP_005254140.1 3821271 D 990282 CDS YP_005254141.1 378990977 3822261..3823757 1 NC_016863.1 similar to Escherichia coli L-xylulose kinase (AAC76604.1); cryptic; L-xylulose kinase 3823757 lyxK 990282003658 lyxK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-xylulose kinase YP_005254141.1 3822261 D 990282 CDS YP_005254142.1 378990978 3823754..3824416 1 NC_016863.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 3824416 sgbH 990282003659 sgbH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-keto-L-gulonate-6-phosphate decarboxylase YP_005254142.1 3823754 D 990282 CDS YP_005254143.1 378990979 3824409..3825269 1 NC_016863.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; putative L-xylulose 5-phosphate 3-epimerase 3825269 sgbU 990282003660 sgbU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative L-xylulose 5-phosphate 3-epimerase YP_005254143.1 3824409 D 990282 CDS YP_005254144.1 378990980 complement(3826119..3826934) 1 NC_016863.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC76936.1); AraC family; helix-turn-helix; putative regulatory protein 3826934 990282003662 STMUK_3664 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005254144.1 3826119 R 990282 CDS YP_005254145.1 378990981 3827198..3829153 1 NC_016863.1 putative cytoplasmic protein 3829153 990282003663 STMUK_3665 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254145.1 3827198 D 990282 CDS YP_005254146.1 378990982 complement(3829271..3830809) 1 NC_016863.1 similar to Escherichia coli aldehyde dehydrogenase B; lactaldehyde dehydrogenase (AAC76612.1); aldehyde dehydrogenase B 3830809 aldB 990282003664 aldB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aldehyde dehydrogenase B YP_005254146.1 3829271 R 990282 CDS YP_005254147.1 378990983 3830978..3831859 1 NC_016863.1 similar to Escherichia coli possible NagC-like transcriptional regulator (AAC73497.1); putative transcriptional regulator 3831859 990282003665 STMUK_3667 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254147.1 3830978 D 990282 CDS YP_005254148.1 378990984 complement(3832144..3833994) 1 NC_016863.1 similar to Escherichia coli selenocysteinyl-tRNA-specific translation factor (AAC76614.1); selenocysteinyl-tRNA-specific translation factor 3833994 selB 990282003666 selB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 selenocysteinyl-tRNA-specific translation factor YP_005254148.1 3832144 R 990282 CDS YP_005254149.1 378990985 complement(3833991..3835382) 1 NC_016863.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 3835382 selA 990282003667 selA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 selenocysteine synthase YP_005254149.1 3833991 R 990282 CDS YP_005254150.1 378990986 complement(3835481..3836089) 1 NC_016863.1 similar to Escherichia coli putative S-transferase (AAC76616.1); putative glutathione S-transferase 3836089 yibF 990282003668 yibF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glutathione S-transferase YP_005254150.1 3835481 R 990282 CDS YP_005254151.1 378990987 3836565..3838481 1 NC_016863.1 similar to Escherichia coli PTS system; mannitol-specific enzyme IIABC components (AAC76623.1); PTS family; mannitol-specific enzyme IIABC component 3838481 mtlA 990282003669 mtlA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 mannitol-specific enzyme IIABC component YP_005254151.1 3836565 D 990282 CDS YP_005254152.1 378990988 3838702..3839850 1 NC_016863.1 similar to Escherichia coli mannitol-1-phosphate dehydrogenase (AAC76624.1); mannitol-1-phosphate 5-dehydrogenase 3839850 mtlD 990282003670 mtlD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 mannitol-1-phosphate 5-dehydrogenase YP_005254152.1 3838702 D 990282 CDS YP_005254153.1 378990989 3839847..3840437 1 NC_016863.1 Acts as a repressor of the mtlAD operon; mannitol repressor protein 3840437 mtlR 990282003671 mtlR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 mannitol repressor protein YP_005254153.1 3839847 D 990282 CDS YP_005254154.1 378990990 complement(3840447..3840656) 1 NC_016863.1 putative cytoplasmic protein 3840656 990282003672 STMUK_3674 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254154.1 3840447 R 990282 CDS YP_005254155.1 378990991 3840947..3841309 1 NC_016863.1 hypothetical protein 3841309 yibL 990282003673 yibL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254155.1 3840947 D 990282 CDS YP_005254156.1 378990992 3841800..3842483 1 NC_016863.1 putative inner membrane lipoprotein 3842483 990282003674 STMUK_3676 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane lipoprotein YP_005254156.1 3841800 D 990282 CDS YP_005254157.1 378990993 3842527..3846912 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC74454.1); putative inner membrane protein 3846912 990282003675 STMUK_3677 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254157.1 3842527 D 990282 CDS YP_005254158.1 378990994 3847211..3848866 1 NC_016863.1 similar to Escherichia coli L-lactate permease (AAC76627.1); L-lactate permease 3848866 lldP 990282003676 lldP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-lactate permease YP_005254158.1 3847211 D 990282 CDS YP_005254159.1 378990995 3848863..3849639 1 NC_016863.1 represses the lctPRD operon; DNA-binding transcriptional repressor LldR 3849639 lldR 990282003677 lldR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional repressor LldR YP_005254159.1 3848863 D 990282 CDS YP_005254160.1 378990996 3849636..3850826 1 NC_016863.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 3850826 lldD 990282003678 lldD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-lactate dehydrogenase YP_005254160.1 3849636 D 990282 CDS YP_005254161.1 378990997 3850890..3851363 1 NC_016863.1 member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; putative tRNA/rRNA methyltransferase YibK 3851363 yibK 990282003679 yibK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative tRNA/rRNA methyltransferase YibK YP_005254161.1 3850890 D 990282 CDS YP_005254162.1 378990998 complement(3851431..3852435) 1 NC_016863.1 similar to Escherichia coli L-idonate transcriptional regulator (AAC77221.1); putative transcriptional regulator 3852435 990282003680 STMUK_3682 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254162.1 3851431 R 990282 CDS YP_005254163.1 378990999 3852754..3853950 1 NC_016863.1 similar to Escherichia coli starvation-sensing protein (AAC74653.1); muconate lactonizing enzyme family; putative mandelate racemase 3853950 990282003681 STMUK_3683 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative mandelate racemase YP_005254163.1 3852754 D 990282 CDS YP_005254164.1 378991000 3854024..3855334 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75831.1); putative permease 3855334 990282003682 STMUK_3684 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005254164.1 3854024 D 990282 CDS YP_005254165.1 378991001 complement(3855417..3856238) 1 NC_016863.1 catalyzes the O-acetylation of serine; serine acetyltransferase 3856238 cysE 990282003683 cysE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 serine acetyltransferase YP_005254165.1 3855417 R 990282 CDS YP_005254166.1 378991002 complement(3856316..3857335) 1 NC_016863.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3857335 gpsA 990282003684 gpsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_005254166.1 3856316 R 990282 CDS YP_005254167.1 378991003 complement(3857335..3857802) 1 NC_016863.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 3857802 secB 990282003685 secB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 preprotein translocase subunit SecB YP_005254167.1 3857335 R 990282 CDS YP_005254168.1 378991004 complement(3857846..3858097) 1 NC_016863.1 similar to Escherichia coli glutaredoxin 3 (AAC76634.1); glutaredoxin 3 3858097 grxC 990282003686 grxC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutaredoxin 3 YP_005254168.1 3857846 R 990282 CDS YP_005254169.1 378991005 complement(3858184..3858615) 1 NC_016863.1 putative rhodanese-like sulfurtransferase 3858615 yibN 990282003687 yibN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative rhodanese-like sulfurtransferase YP_005254169.1 3858184 R 990282 CDS YP_005254170.1 378991006 3858863..3860407 1 NC_016863.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3860407 pmgI 990282003688 pmgI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoglyceromutase YP_005254170.1 3858863 D 990282 CDS YP_005254171.1 378991007 3860417..3861700 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC76637.1); hypothetical protein 3861700 yibP 990282003689 yibP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254171.1 3860417 D 990282 CDS YP_005254172.1 378991008 3861704..3862666 1 NC_016863.1 hypothetical protein 3862666 yigQ 990282003690 yigQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254172.1 3861704 D 990282 CDS YP_005254173.1 378991009 complement(3862653..3863687) 1 NC_016863.1 similar to Escherichia coli putative regulator (AAC76639.1); putative glycosyl transferase 3863687 yibD 990282003691 yibD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyl transferase YP_005254173.1 3862653 R 990282 CDS YP_005254174.1 378991010 complement(3864181..3865206) 1 NC_016863.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 3865206 tdh 990282003692 tdh Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-threonine 3-dehydrogenase YP_005254174.1 3864181 R 990282 CDS YP_005254175.1 378991011 complement(3865216..3866412) 1 NC_016863.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 3866412 kbl 990282003693 kbl Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-amino-3-ketobutyrate coenzyme A ligase YP_005254175.1 3865216 R 990282 CDS YP_005254176.1 378991012 3866615..3867547 1 NC_016863.1 catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 3867547 rfaD 990282003694 rfaD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ADP-L-glycero-D-manno-heptose-6-epimerase YP_005254176.1 3866615 D 990282 CDS YP_005254177.1 378991013 3867550..3868596 1 NC_016863.1 catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose--LPS heptosyltransferase 3868596 rfaF 990282003695 rfaF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ADP-heptose--LPS heptosyltransferase YP_005254177.1 3867550 D 990282 CDS YP_005254178.1 378991014 3868596..3869549 1 NC_016863.1 lipopolysaccharide heptosyltransferase-1 (SW:RFAC_SALTY); ADP-heptose--LPS heptosyltransferase 3869549 rfaC 990282003696 rfaC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ADP-heptose--LPS heptosyltransferase YP_005254178.1 3868596 D 990282 CDS YP_005254179.1 378991015 3869589..3870803 1 NC_016863.1 O-antigen ligase (SW:RFAL_SALTY); O-antigen ligase 3870803 rfaL 990282003697 rfaL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 O-antigen ligase YP_005254179.1 3869589 D 990282 CDS YP_005254180.1 378991016 complement(3870860..3872005) 1 NC_016863.1 lipopolysaccharide 1,2-N-acetylglucosaminetransferase (SW:RFAK_SALTY); lipopolysaccharide core biosynthetic protein; putative hexose transferase 3872005 rfaK 990282003698 rfaK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hexose transferase YP_005254180.1 3870860 R 990282 CDS YP_005254181.1 378991017 complement(3872106..3872915) 1 NC_016863.1 lipopolysaccharide core biosynthetic protein RfaZ (SW:RFAZ_SALTY); lipopolysaccharide core biosynthesis protein 3872915 rfaZ 990282003699 rfaZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipopolysaccharide core biosynthesis protein YP_005254181.1 3872106 R 990282 CDS YP_005254182.1 378991018 complement(3873065..3873763) 1 NC_016863.1 lipopolysaccharide core biosynthesis protein RfaY (SW:RFAY_SALTY); modification of heptose region of the core; lipopolysaccharide core biosynthesis protein 3873763 rfaY 990282003700 rfaY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipopolysaccharide core biosynthesis protein YP_005254182.1 3873065 R 990282 CDS YP_005254183.1 378991019 complement(3873786..3874796) 1 NC_016863.1 UDP-D-glucose/galactosyl; lipopolysaccharide 1,2-glucosyltransferase (SW:RFAJ_SALTY); lipopolysaccharide glucosyltransferase 3874796 rfaJ 990282003701 rfaJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipopolysaccharide glucosyltransferase YP_005254183.1 3873786 R 990282 CDS YP_005254184.1 378991020 complement(3874814..3875827) 1 NC_016863.1 UDP-D-galactose/glucosyl; lipopolysaccharide 1,3-galactosyltransferase (SW:RFAI_SALTY); lipopolysaccharide-alpha-1, 3-D-galactosyltransferase 3875827 rfaI 990282003702 rfaI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipopolysaccharide-alpha-1, 3-D-galactosyltransferase YP_005254184.1 3874814 R 990282 CDS YP_005254185.1 378991021 complement(3875833..3876912) 1 NC_016863.1 UDP-D-galactose/(glucosyl; lipopolysaccharide 1,6-galactosyltransferase (SW:RFAB_SALTY); UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase 3876912 rfaB 990282003703 rfaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase YP_005254185.1 3875833 R 990282 CDS YP_005254186.1 378991022 complement(3876982..3877215) 1 NC_016863.1 hypothetical 9.0 kDa protein in rfaB-rfaP intergenic region (SW:YIBR_SALTY); putative inner membrane protein 3877215 yibR 990282003704 yibR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254186.1 3876982 R 990282 CDS YP_005254187.1 378991023 complement(3877247..3878044) 1 NC_016863.1 lipopolysaccharide core biosynthetic protein RfaP (SW:RFAP_SALTY); phosphorylation of core heptose; lipopolysaccharide core biosynthetic protein 3878044 rfaP 990282003705 rfaP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipopolysaccharide core biosynthetic protein YP_005254187.1 3877247 R 990282 CDS YP_005254188.1 378991024 complement(3878037..3879161) 1 NC_016863.1 similar to Escherichia coli glucosyltransferase I; lipopolysaccharide core biosynthesis (AAC76655.1); glucosyltransferase I 3879161 rfaG 990282003706 rfaG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucosyltransferase I YP_005254188.1 3878037 R 990282 CDS YP_005254189.1 378991025 complement(3879158..3880192) 1 NC_016863.1 similar to Escherichia coli lipopolysaccharide core biosynthetic protein (AAC76656.1); modification of heptose region of core; lipopolysaccharide core biosynthesis protein 3880192 rfaQ 990282003707 rfaQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipopolysaccharide core biosynthesis protein YP_005254189.1 3879158 R 990282 CDS YP_005254190.1 378991026 3880637..3881914 1 NC_016863.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 3881914 kdtA 990282003708 kdtA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-deoxy-D-manno-octulosonic-acid transferase YP_005254190.1 3880637 D 990282 CDS YP_005254191.1 378991027 3881923..3882402 1 NC_016863.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3882402 coaD 990282003709 coaD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphopantetheine adenylyltransferase YP_005254191.1 3881923 D 990282 CDS YP_005254192.1 378991028 complement(3882430..3883239) 1 NC_016863.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 3883239 mutM 990282003710 mutM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formamidopyrimidine-DNA glycosylase YP_005254192.1 3882430 R 990282 CDS YP_005254193.1 378991029 complement(3883337..3883504) 1 NC_016863.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of th; 50S ribosomal protein L33 3883504 rpmG 990282003711 rpmG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L33 YP_005254193.1 3883337 R 990282 CDS YP_005254194.1 378991030 complement(3883525..3883761) 1 NC_016863.1 required for 70S ribosome assembly; 50S ribosomal protein L28 3883761 rpmB 990282003712 rpmB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L28 YP_005254194.1 3883525 R 990282 CDS YP_005254195.1 378991031 complement(3883979..3884644) 1 NC_016863.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 3884644 radC 990282003713 radC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA repair protein RadC YP_005254195.1 3883979 R 990282 CDS YP_005254196.1 378991032 3884817..3886040 1 NC_016863.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3886040 dfp 990282003714 dfp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_005254196.1 3884817 D 990282 CDS YP_005254197.1 378991033 3886021..3886476 1 NC_016863.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 3886476 dut 990282003715 dut Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_005254197.1 3886021 D 990282 CDS YP_005254198.1 378991034 3886584..3887180 1 NC_016863.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3887180 ttk 990282003716 ttk Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nucleoid occlusion protein YP_005254198.1 3886584 D 990282 CDS YP_005254199.1 378991035 complement(3887258..3887899) 1 NC_016863.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 3887899 pyrE 990282003717 pyrE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 orotate phosphoribosyltransferase YP_005254199.1 3887258 R 990282 CDS YP_005254200.1 378991036 complement(3887978..3888694) 1 NC_016863.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 3888694 rph 990282003718 rph Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonuclease PH YP_005254200.1 3887978 R 990282 CDS YP_005254201.1 378991037 3888820..3889683 1 NC_016863.1 similar to Escherichia coli putative alpha helix protein (AAC76668.1); hypothetical protein 3889683 yicC 990282003719 yicC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254201.1 3888820 D 990282 CDS YP_005254202.1 378991038 complement(3889733..3890635) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73730.1); LysR family; putative transcriptional regulator 3890635 990282003720 STMUK_3722 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254202.1 3889733 R 990282 CDS YP_005254203.1 378991039 3890709..3891590 1 NC_016863.1 similar to glyoxylases; putative Zn-dependent hydrolase 3891590 990282003721 STMUK_3723 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative Zn-dependent hydrolase YP_005254203.1 3890709 D 990282 CDS YP_005254204.1 378991040 3891841..3892458 1 NC_016863.1 catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 3892458 yigC 990282003722 yigC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_005254204.1 3891841 D 990282 CDS YP_005254205.1 378991041 complement(3892455..3894140) 1 NC_016863.1 this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 3894140 yicF 990282003723 yicF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NAD-dependent DNA ligase LigB YP_005254205.1 3892455 R 990282 CDS YP_005254206.1 378991042 3894397..3895020 1 NC_016863.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 3895020 gmk 990282003724 gmk Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 guanylate kinase YP_005254206.1 3894397 D 990282 CDS YP_005254207.1 378991043 3895075..3895350 1 NC_016863.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3895350 rpoZ 990282003725 rpoZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-directed RNA polymerase subunit omega YP_005254207.1 3895075 D 990282 CDS YP_005254208.1 378991044 3895369..3897480 1 NC_016863.1 similar to Escherichia coli (p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (AAC76674.1); bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3897480 spoT 990282003726 spoT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_005254208.1 3895369 D 990282 CDS YP_005254209.1 378991045 3897485..3898174 1 NC_016863.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3898174 spoU 990282003727 spoU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA guanosine-2'-O-methyltransferase YP_005254209.1 3897485 D 990282 CDS YP_005254210.1 378991046 3898180..3900261 1 NC_016863.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3900261 recG 990282003728 recG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent DNA helicase RecG YP_005254210.1 3898180 D 990282 CDS YP_005254211.1 378991047 complement(3900264..3901115) 1 NC_016863.1 putative cytoplasmic protein 3901115 990282003729 STMUK_3731 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254211.1 3900264 R 990282 CDS YP_005254212.1 378991048 complement(3901118..3902323) 1 NC_016863.1 similar to Escherichia coli glutamate transport (AAC76677.1); GltS family; glutamate transport protein 3902323 gltS 990282003730 gltS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamate transport protein YP_005254212.1 3901118 R 990282 CDS YP_005254213.1 378991049 3902551..3903942 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC76678.1); NCS2 family; putative purine/xanthine transport protein 3903942 yicE 990282003731 yicE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative purine/xanthine transport protein YP_005254213.1 3902551 D 990282 CDS YP_005254214.1 378991050 3904063..3905772 1 NC_016863.1 putative inner membrane protein 3905772 yicH 990282003732 yicH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254214.1 3904063 D 990282 CDS YP_005254215.1 378991051 complement(3905875..3908193) 1 NC_016863.1 catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xy; alpha-xylosidase 3908193 yicI 990282003733 yicI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alpha-xylosidase YP_005254215.1 3905875 R 990282 CDS YP_005254216.1 378991052 complement(3908205..3909587) 1 NC_016863.1 may be involved in the transport of galactosides-pentoses-hexuronides; putative transporter 3909587 yicJ 990282003734 yicJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transporter YP_005254216.1 3908205 R 990282 CDS YP_005254217.1 378991053 complement(3910286..3910630) 1 NC_016863.1 putative cytoplasmic protein 3910630 990282003736 STMUK_3738 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254217.1 3910286 R 990282 CDS YP_005254218.1 378991054 3911308..3912498 1 NC_016863.1 similar to putative ATP binding protein SugR (gi|4324607); ATP-binding protein 3912498 sugR 990282003737 sugR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-binding protein YP_005254218.1 3911308 D 990282 CDS YP_005254219.1 378991055 3912495..3912845 1 NC_016863.1 similar to putative ATP binding protein SugR (gi|4324607); putative cytoplasmic protein 3912845 990282003738 STMUK_3740 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254219.1 3912495 D 990282 CDS YP_005254220.1 378991056 3913032..3914069 1 NC_016863.1 RhuM (gi|4324608); putative cytoplasmic protein 3914069 rhuM 990282003739 rhuM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254220.1 3913032 D 990282 CDS YP_005254221.1 378991057 3915368..3915985 1 NC_016863.1 RmbA (gi|4324609); putative cytoplasmic protein 3915985 rmbA 990282003740 rmbA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254221.1 3915368 D 990282 CDS YP_005254222.1 378991058 3916060..3918927 1 NC_016863.1 MisL (gi|4324610); similar to AIDA-I autotransporter; member of IgA1 family of proteases; outer membrane protein; putative autotransporter 3918927 misL 990282003741 misL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative autotransporter YP_005254222.1 3916060 D 990282 CDS YP_005254223.1 378991059 complement(3919022..3919486) 1 NC_016863.1 FidL (gi|4324611); putative inner membrane protein 3919486 fidL 990282003742 fidL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254223.1 3919022 R 990282 CDS YP_005254224.1 378991060 complement(3919497..3920354) 1 NC_016863.1 putative transcriptional regulator MarT (gi|4324612); similar to Vibrio cholerae ToxR; putative transcriptional regulator 3920354 marT 990282003743 marT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254224.1 3919497 R 990282 CDS YP_005254225.1 378991061 complement(3920407..3920520) 1 NC_016863.1 Pathogenicity island encoded protein: SPI3; putative cytoplasmic protein 3920520 990282003744 STMUK_3746 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254225.1 3920407 R 990282 CDS YP_005254226.1 378991062 3921138..3921818 1 NC_016863.1 SlsA (gi|4324613); similar to STM0950; putative inner membrane protein 3921818 slsA 990282003745 slsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254226.1 3921138 D 990282 CDS YP_005254227.1 378991063 complement(3922047..3922526) 1 NC_016863.1 CigR (gi|4324614); putative inner membrane protein 3922526 cigR 990282003746 cigR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254227.1 3922047 R 990282 CDS YP_005254228.1 378991064 complement(3922841..3925567) 1 NC_016863.1 Mg(2+) transport ATPase, P-type 2 (SW:ATMB_SALTY); cotranscribed with mgtC; Mg2+ transporter 3925567 mgtB 990282003747 mgtB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Mg2+ transporter YP_005254228.1 3922841 R 990282 CDS YP_005254229.1 378991065 complement(3925787..3926482) 1 NC_016863.1 Mg(2+) transport ATPase protein C (SW:ATMC_SALTY); reqired for intracmacrophage survival and growth in low calcium; cotranscribed with mgtB and transcriptionally controlled by PhoP/PhoQ system; Mg2+ transport protein 3926482 mgtC 990282003748 mgtC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Mg2+ transport protein YP_005254229.1 3925787 R 990282 CDS YP_005254230.1 378991066 3926991..3927893 1 NC_016863.1 hypothetical protein in selC 3'region (SW:YICL_SALTY); integral membrane protein; putative permease 3927893 yicL 990282003749 yicL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005254230.1 3926991 D 990282 CDS YP_005254231.1 378991067 complement(3927936..3928877) 1 NC_016863.1 putative cytoplasmic protein 3928877 990282003750 STMUK_3752 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254231.1 3927936 R 990282 CDS YP_005254232.1 378991068 complement(3929113..3929856) 1 NC_016863.1 putative cytoplasmic protein 3929856 990282003751 STMUK_3753 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254232.1 3929113 R 990282 CDS YP_005254233.1 378991069 complement(3929843..3930952) 1 NC_016863.1 L-seryl-tRNA selenium transferase; putative selenocysteine synthase 3930952 990282003752 STMUK_3754 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative selenocysteine synthase YP_005254233.1 3929843 R 990282 CDS YP_005254234.1 378991070 complement(3930956..3931816) 1 NC_016863.1 similar to Escherichia coli PTS enzyme IID; mannose-specific (AAC74889.1); putative phosphotransferase system enzyme II 3931816 990282003753 STMUK_3755 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphotransferase system enzyme II YP_005254234.1 3930956 R 990282 CDS YP_005254235.1 378991071 complement(3931813..3932562) 1 NC_016863.1 similar to Escherichia coli PTS system N-acetylgalactosamine-specific IIC component 1 (AAC76173.1); putative phosphotransferase system enzyme IIC 3932562 990282003754 STMUK_3756 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphotransferase system enzyme IIC YP_005254235.1 3931813 R 990282 CDS YP_005254236.1 378991072 complement(3932708..3933193) 1 NC_016863.1 similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative phosphotransferase system enzyme IIB 3933193 990282003755 STMUK_3757 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphotransferase system enzyme IIB YP_005254236.1 3932708 R 990282 CDS YP_005254237.1 378991073 complement(3933204..3933629) 1 NC_016863.1 putative phosphotransferase system enzyme IIA 3933629 990282003756 STMUK_3758 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphotransferase system enzyme IIA YP_005254237.1 3933204 R 990282 CDS YP_005254238.1 378991074 complement(3933848..3936646) 1 NC_016863.1 similar to Escherichia coli psp operon transcriptional activator (AAC74385.1); NtrC family; contains ATPase domain; putative transcriptional regulator 3936646 990282003757 STMUK_3759 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254238.1 3933848 R 990282 CDS YP_005254239.1 378991075 3936843..3937136 1 NC_016863.1 putative inner membrane protein 3937136 990282003758 STMUK_3760 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254239.1 3936843 D 990282 CDS YP_005254240.1 378991076 3937242..3938624 1 NC_016863.1 similar to Escherichia coli 6-phospho-beta-glucosidase; cryptic (AAC75758.1); putative glycosyl hydrolase 3938624 990282003759 STMUK_3761 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycosyl hydrolase YP_005254240.1 3937242 D 990282 CDS YP_005254241.1 378991077 complement(3938684..3939877) 1 NC_016863.1 experimental results in Escherichia coli suggest that this gene encodes an inosine export protein; member of major facilitator superfamily; MFS; ribonucleoside transporter 3939877 yicM 990282003760 yicM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonucleoside transporter YP_005254241.1 3938684 R 990282 CDS YP_005254242.1 378991078 3940093..3940452 1 NC_016863.1 putative cytoplasmic protein 3940452 990282003761 STMUK_3763 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254242.1 3940093 D 990282 CDS YP_005254243.1 378991079 3940436..3940759 1 NC_016863.1 helix-turn-helix; putative DNA-binding protein 3940759 990282003762 STMUK_3764 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA-binding protein YP_005254243.1 3940436 D 990282 CDS YP_005254244.1 378991080 complement(3940850..3941119) 1 NC_016863.1 similar to Escherichia coli PTS system protein HPr (AAC75468.1); putative phosphotransferase system HPr protein 3941119 990282003763 STMUK_3765 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphotransferase system HPr protein YP_005254244.1 3940850 R 990282 CDS YP_005254245.1 378991081 complement(3941129..3941989) 1 NC_016863.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; putative fructose-1,6-bisphosphate aldolase 3941989 gatY 990282003764 gatY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fructose-1,6-bisphosphate aldolase YP_005254245.1 3941129 R 990282 CDS YP_005254246.1 378991082 complement(3942052..3943536) 1 NC_016863.1 similar to Escherichia coli L-fuculokinase (AAC75845.1); pentulose and hexulose; putative sugar kinase 3943536 990282003765 STMUK_3767 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar kinase YP_005254246.1 3942052 R 990282 CDS YP_005254247.1 378991083 complement(3943529..3944887) 1 NC_016863.1 similar to Escherichia coli PTS system galactitol-specific enzyme IIC (AAC75153.1); putative PTS system galactitol-specific enzyme IIC component 3944887 990282003766 STMUK_3768 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative PTS system galactitol-specific enzyme IIC component YP_005254247.1 3943529 R 990282 CDS YP_005254248.1 378991084 complement(3944963..3945250) 1 NC_016863.1 similar to Escherichia coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1); hypothetical protein 3945250 990282003767 STMUK_3769 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254248.1 3944963 R 990282 CDS YP_005254249.1 378991085 complement(3945247..3945720) 1 NC_016863.1 similar to Escherichia coli galactitol-specific enzyme IIA of phosphotransferase system (AAC75155.1); phosphotransferase system mannitol/fructose-specific IIA component 3945720 990282003768 STMUK_3770 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphotransferase system mannitol/fructose-specific IIA component YP_005254249.1 3945247 R 990282 CDS YP_005254250.1 378991086 complement(3945738..3946481) 1 NC_016863.1 similar to Escherichia coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); GntR family; putative regulatory protein 3946481 990282003769 STMUK_3771 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005254250.1 3945738 R 990282 CDS YP_005254251.1 378991087 complement(3946834..3947286) 1 NC_016863.1 putative inner membrane protein 3947286 yicN 990282003770 yicN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254251.1 3946834 R 990282 CDS YP_005254252.1 378991088 complement(3947479..3948870) 1 NC_016863.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter 3948870 uhpT 990282003771 uhpT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sugar phosphate antiporter YP_005254252.1 3947479 R 990282 CDS YP_005254253.1 378991089 complement(3949013..3950341) 1 NC_016863.1 membrane protein regulates uhpT expression; regulatory protein UhpC 3950341 uhpC 990282003772 uhpC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 regulatory protein UhpC YP_005254253.1 3949013 R 990282 CDS YP_005254254.1 378991090 complement(3950351..3951853) 1 NC_016863.1 Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB 3951853 uhpB 990282003773 uhpB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sensory histidine kinase UhpB YP_005254254.1 3950351 R 990282 CDS YP_005254255.1 378991091 complement(3951853..3952443) 1 NC_016863.1 response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; DNA-binding transcriptional activator UhpA 3952443 uhpA 990282003774 uhpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator UhpA YP_005254255.1 3951853 R 990282 CDS YP_005254256.1 378991092 complement(3952518..3953531) 1 NC_016863.1 putative cytoplasmic protein 3953531 990282003775 STMUK_3777 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254256.1 3952518 R 990282 CDS YP_005254257.1 378991093 complement(3953543..3954859) 1 NC_016863.1 similar to Escherichia coli fucose permease (AAC75843.1); putative L-fucose permease 3954859 990282003776 STMUK_3778 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative L-fucose permease YP_005254257.1 3953543 R 990282 CDS YP_005254258.1 378991094 complement(3954890..3955810) 1 NC_016863.1 similar to Escherichia coli ribokinase (AAC76775.1); ribokinase family; putative sugar kinase 3955810 990282003777 STMUK_3779 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar kinase YP_005254258.1 3954890 R 990282 CDS YP_005254259.1 378991095 3956135..3956920 1 NC_016863.1 similar to Escherichia coli transcriptional repressor for deo operon, tsx, nupG (AAC73927.1); DeoR family; putative regulatory protein 3956920 990282003778 STMUK_3780 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005254259.1 3956135 D 990282 CDS YP_005254260.1 378991096 complement(3956922..3957212) 1 NC_016863.1 with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity; acetolactate synthase 1 regulatory subunit 3957212 ilvN 990282003779 ilvN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetolactate synthase 1 regulatory subunit YP_005254260.1 3956922 R 990282 CDS YP_005254261.1 378991097 complement(3957216..3958904) 1 NC_016863.1 catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase catalytic subunit 3958904 ilvB 990282003780 ilvB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetolactate synthase catalytic subunit YP_005254261.1 3957216 R 990282 CDS YP_005254262.1 378991098 complement(3959011..3959109) 1 NC_016863.1 similar to Escherichia coli ilvB operon leader peptide (AAC76695.1); ilvB operon leader peptide 3959109 ivbL 990282003781 ivbL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ilvB operon leader peptide YP_005254262.1 3959011 R 990282 CDS YP_005254263.1 378991099 3959743..3959832 1 NC_016863.1 hypothetical protein 3959832 990282003782 STMUK_3784 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254263.1 3959743 D 990282 CDS YP_005254264.1 378991100 3959925..3960785 1 NC_016863.1 integral membrane protein 3960785 990282003783 STMUK_3785 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 integral membrane protein YP_005254264.1 3959925 D 990282 CDS YP_005254265.1 378991101 3960988..3962172 1 NC_016863.1 multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 3962172 emrD 990282003784 emrD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multidrug resistance protein D YP_005254265.1 3960988 D 990282 CDS YP_005254266.1 378991102 complement(3962099..3963184) 1 NC_016863.1 hypothetical protein 3963184 990282003785 STMUK_3787 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254266.1 3962099 R 990282 CDS YP_005254267.1 378991103 complement(3963248..3964171) 1 NC_016863.1 regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 3964171 dsdC 990282003786 dsdC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator DsdC YP_005254267.1 3963248 R 990282 CDS YP_005254268.1 378991104 3964397..3965734 1 NC_016863.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 3965734 dsdX 990282003787 dsdX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 permease DsdX YP_005254268.1 3964397 D 990282 CDS YP_005254269.1 378991105 3965752..3967074 1 NC_016863.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 3967074 dsdA 990282003788 dsdA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-serine dehydratase YP_005254269.1 3965752 D 990282 CDS YP_005254270.1 378991106 complement(3967156..3967686) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator (AAC76697.1); putative cytoplasmic protein 3967686 yidF 990282003789 yidF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254270.1 3967156 R 990282 CDS YP_005254271.1 378991107 complement(3967683..3968045) 1 NC_016863.1 putative inner membrane protein 3968045 yidG 990282003790 yidG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254271.1 3967683 R 990282 CDS YP_005254272.1 378991108 complement(3968035..3968382) 1 NC_016863.1 putative inner membrane protein 3968382 yidH 990282003791 yidH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254272.1 3968035 R 990282 CDS YP_005254273.1 378991109 complement(3968826..3970487) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC76708.1); hypothetical protein 3970487 yidE 990282003792 yidE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254273.1 3968826 R 990282 CDS YP_005254274.1 378991110 complement(3970677..3971105) 1 NC_016863.1 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; heat shock chaperone IbpB 3971105 ibpB 990282003793 ibpB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 heat shock chaperone IbpB YP_005254274.1 3970677 R 990282 CDS YP_005254275.1 378991111 complement(3971215..3971628) 1 NC_016863.1 with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA 3971628 ibpA 990282003794 ibpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 heat shock protein IbpA YP_005254275.1 3971215 R 990282 CDS YP_005254276.1 378991112 3971935..3972270 1 NC_016863.1 hypothetical protein 3972270 yidQ 990282003795 yidQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254276.1 3971935 D 990282 CDS YP_005254277.1 378991113 complement(3972272..3973498) 1 NC_016863.1 putative cytoplasmic protein 3973498 yidR 990282003796 yidR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254277.1 3972272 R 990282 CDS YP_005254278.1 378991114 complement(3973620..3974663) 1 NC_016863.1 similar to Escherichia coli possible subunit of heme lyase (AAC75254.1); involved in cytochrome c-type biogenesis; putative heme lyase subunit 3974663 ccmH 990282003797 ccmH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative heme lyase subunit YP_005254278.1 3973620 R 990282 CDS YP_005254279.1 378991115 complement(3974660..3975217) 1 NC_016863.1 similar to Escherichia coli disulfide oxidoreductase; biogenesis of cytochrome c (AAC75255.1); heme lyase disulfide oxidoreductase 3975217 ccmG 990282003798 ccmG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 heme lyase disulfide oxidoreductase YP_005254279.1 3974660 R 990282 CDS YP_005254280.1 378991116 complement(3975214..3977145) 1 NC_016863.1 similar to Escherichia coli cytochrome c-type biogenesis protein (AAC75256.1); cytochrome c-type biogenesis protein 3977145 ccmF 990282003799 ccmF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome c-type biogenesis protein YP_005254280.1 3975214 R 990282 CDS YP_005254281.1 378991117 complement(3977142..3977621) 1 NC_016863.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocyt; cytochrome c-type biogenesis protein CcmE 3977621 ccmE 990282003800 ccmE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome c-type biogenesis protein CcmE YP_005254281.1 3977142 R 990282 CDS YP_005254282.1 378991118 complement(3977618..3977830) 1 NC_016863.1 similar to Escherichia coli heme exporter protein C (AAC75258.1); cytochrome c-type biogenesis protein; heme exporter protein C 3977830 ccmD 990282003801 ccmD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 heme exporter protein C YP_005254282.1 3977618 R 990282 CDS YP_005254283.1 378991119 complement(3977827..3978564) 1 NC_016863.1 similar to Escherichia coli heme exporter protein C (AAC75259.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein 3978564 ccmC 990282003802 ccmC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 heme exporter protein YP_005254283.1 3977827 R 990282 CDS YP_005254284.1 378991120 complement(3978616..3979272) 1 NC_016863.1 similar to Escherichia coli heme exporter protein B cytochrome c-type biogenesis protein (AAC75260.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein 3979272 ccmB 990282003803 ccmB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 heme exporter protein YP_005254284.1 3978616 R 990282 CDS YP_005254285.1 378991121 complement(3979272..3979889) 1 NC_016863.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 3979889 ccmA 990282003804 ccmA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome c biogenesis protein CcmA YP_005254285.1 3979272 R 990282 CDS YP_005254286.1 378991122 complement(3979895..3981295) 1 NC_016863.1 similar to Escherichia coli putative cytochrome C peroxidase (AAC76543.1); putative cytochrome c peroxidase 3981295 990282003805 STMUK_3807 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytochrome c peroxidase YP_005254286.1 3979895 R 990282 CDS YP_005254287.1 378991123 complement(3981485..3982117) 1 NC_016863.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 3982117 torD 990282003806 torD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chaperone protein TorD YP_005254287.1 3981485 R 990282 CDS YP_005254288.1 378991124 complement(3982110..3984662) 1 NC_016863.1 similar to Escherichia coli trimethylamine N-oxide reductase subunit (AAC74082.1); trimethylamine N-oxide reductase subunit 3984662 torA 990282003807 torA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 trimethylamine N-oxide reductase subunit YP_005254288.1 3982110 R 990282 CDS YP_005254289.1 378991125 complement(3984652..3985836) 1 NC_016863.1 similar to Escherichia coli trimethylamine N-oxide reductase; cytochrome c-type subunit (AAC74081.1); also has activity as negativer regulator of tor operon; trimethylamine N-oxide reductase cytochrome c-like subunit 3985836 torC 990282003808 torC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 trimethylamine N-oxide reductase cytochrome c-like subunit YP_005254289.1 3984652 R 990282 CDS YP_005254290.1 378991126 3985966..3986658 1 NC_016863.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 3986658 torR 990282003809 torR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator TorR YP_005254290.1 3985966 D 990282 CDS YP_005254291.1 378991127 complement(3986631..3987671) 1 NC_016863.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 3987671 torT 990282003810 torT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 TMAO reductase system periplasmic protein TorT YP_005254291.1 3986631 R 990282 CDS YP_005254292.1 378991128 3987751..3990486 1 NC_016863.1 Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; hybrid sensory histidine kinase TorS 3990486 torS 990282003811 torS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hybrid sensory histidine kinase TorS YP_005254292.1 3987751 D 990282 CDS YP_005254293.1 378991129 complement(3990512..3991849) 1 NC_016863.1 similar to Escherichia coli D-galactonate transport (AAC76714.1); MFS family; D-galactonate transport protein 3991849 dgoT 990282003812 dgoT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-galactonate transport protein YP_005254293.1 3990512 R 990282 CDS YP_005254294.1 378991130 complement(3991934..3993082) 1 NC_016863.1 similar to Escherichia coli 2-oxo-3-deoxygalactonate 6-phosphate aldolase/galactonate dehydratase (AAC76715.1); galactonate dehydratase 3993082 dgoA 990282003813 dgoA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 galactonate dehydratase YP_005254294.1 3991934 R 990282 CDS YP_005254295.1 378991131 complement(3993079..3993696) 1 NC_016863.1 similar to 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (Pid: YP_218733.1).; hypothetical protein 3993696 990282003814 STMUK_3816 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254295.1 3993079 R 990282 CDS YP_005254296.1 378991132 complement(3993680..3994558) 1 NC_016863.1 similar to Escherichia coli 2-oxo-3-deoxygalactonate kinase (AAC76716.1); 2-oxo-3-deoxygalactonate kinase 3994558 dgoK 990282003815 dgoK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2-oxo-3-deoxygalactonate kinase YP_005254296.1 3993680 R 990282 CDS YP_005254297.1 378991133 complement(3994555..3995244) 1 NC_016863.1 similar to Escherichia coli regulator protein for dgo operon (AAC76718.1); GntR family; galactonate operon transcriptional repressor 3995244 dgoR 990282003816 dgoR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 galactonate operon transcriptional repressor YP_005254297.1 3994555 R 990282 CDS YP_005254298.1 378991134 complement(3995505..3996350) 1 NC_016863.1 YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases su; sugar phosphatase 3996350 yidA 990282003817 yidA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sugar phosphatase YP_005254298.1 3995505 R 990282 CDS YP_005254299.1 378991135 3996656..3997918 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75831.1); putative permease 3997918 990282003818 STMUK_3820 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005254299.1 3996656 D 990282 CDS YP_005254300.1 378991136 3997932..3999125 1 NC_016863.1 similar to Escherichia coli starvation-sensing protein (AAC74653.1); muconate lactonizing enzyme family; putative mandelate racemase 3999125 990282003819 STMUK_3821 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative mandelate racemase YP_005254300.1 3997932 D 990282 CDS YP_005254301.1 378991137 3999240..4000136 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73855.1); LysR family; putative transcriptional regulator 4000136 990282003820 STMUK_3822 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254301.1 3999240 D 990282 CDS YP_005254302.1 378991138 complement(4000155..4002569) 1 NC_016863.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4002569 gyrB 990282003821 gyrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA gyrase subunit B YP_005254302.1 4000155 R 990282 CDS YP_005254303.1 378991139 complement(4002598..4003671) 1 NC_016863.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4003671 recF 990282003822 recF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 recombination protein F YP_005254303.1 4002598 R 990282 CDS YP_005254304.1 378991140 complement(4003819..4004919) 1 NC_016863.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 4004919 dnaN 990282003823 dnaN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase III subunit beta YP_005254304.1 4003819 R 990282 CDS YP_005254305.1 378991141 complement(4004924..4006324) 1 NC_016863.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 4006324 dnaA 990282003824 dnaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chromosomal replication initiation protein YP_005254305.1 4004924 R 990282 CDS YP_005254306.1 378991142 4006985..4007125 1 NC_016863.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4007125 rpmH 990282003825 rpmH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L34 YP_005254306.1 4006985 D 990282 CDS YP_005254307.1 378991143 4007142..4007501 1 NC_016863.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4007501 rnpA 990282003826 rnpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonuclease P YP_005254307.1 4007142 D 990282 CDS YP_005254308.1 378991144 4007465..4007722 1 NC_016863.1 hypothetical protein 4007722 990282003827 STMUK_3829 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254308.1 4007465 D 990282 CDS YP_005254309.1 378991145 4007725..4009371 1 NC_016863.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 4009371 yidC 990282003828 yidC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein translocase component YidC YP_005254309.1 4007725 D 990282 CDS YP_005254310.1 378991146 4009513..4010877 1 NC_016863.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimeriza; tRNA modification GTPase TrmE 4010877 trmE 990282003829 trmE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA modification GTPase TrmE YP_005254310.1 4009513 D 990282 CDS YP_005254311.1 378991147 4012678..4013640 1 NC_016863.1 putative inner membrane protein 4013640 990282003831 STMUK_3834 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254311.1 4012678 D 990282 CDS YP_005254312.1 378991148 4013706..4014575 1 NC_016863.1 RNA-dependent DNA polymerase; putative reverse transcriptase 4014575 990282003832 STMUK_3835 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative reverse transcriptase YP_005254312.1 4013706 D 990282 CDS YP_005254313.1 378991149 4015377..4016564 1 NC_016863.1 Confers resistance to chloramphenicol; multidrug efflux system protein MdtL 4016564 yidY 990282003833 yidY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multidrug efflux system protein MdtL YP_005254313.1 4015377 D 990282 CDS YP_005254314.1 378991150 4016533..4017492 1 NC_016863.1 Involved in anaerobic NO protection; DNA-binding transcriptional regulator YidZ 4017492 yidZ 990282003834 yidZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator YidZ YP_005254314.1 4016533 D 990282 CDS YP_005254315.1 378991151 4017650..4018405 1 NC_016863.1 putative cytoplasmic protein 4018405 yieE 990282003835 yieE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254315.1 4017650 D 990282 CDS YP_005254316.1 378991152 4018405..4018989 1 NC_016863.1 putative oxidoreductase 4018989 yieF 990282003836 yieF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidoreductase YP_005254316.1 4018405 D 990282 CDS YP_005254317.1 378991153 complement(4019034..4020497) 1 NC_016863.1 similar to Escherichia coli putative membrane/transport protein (AAC76737.1); xanthine/uracil permeases family; hypothetical protein 4020497 yieG 990282003837 yieG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254317.1 4019034 R 990282 CDS YP_005254318.1 378991154 4020540..4021205 1 NC_016863.1 YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; 6-phosphogluconate phosphatase 4021205 yieH 990282003838 yieH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 6-phosphogluconate phosphatase YP_005254318.1 4020540 D 990282 CDS YP_005254319.1 378991155 complement(4021300..4022025) 1 NC_016863.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 4022025 phoU 990282003839 phoU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator PhoU YP_005254319.1 4021300 R 990282 CDS YP_005254320.1 378991156 complement(4022040..4022813) 1 NC_016863.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 4022813 pstB 990282003840 pstB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphate transporter ATP-binding protein YP_005254320.1 4022040 R 990282 CDS YP_005254321.1 378991157 complement(4022900..4023790) 1 NC_016863.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA 4023790 pstA 990282003841 pstA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphate transporter permease subunit PtsA YP_005254321.1 4022900 R 990282 CDS YP_005254322.1 378991158 complement(4023790..4024749) 1 NC_016863.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC 4024749 pstC 990282003842 pstC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphate transporter permease subunit PstC YP_005254322.1 4023790 R 990282 CDS YP_005254323.1 378991159 complement(4024885..4025925) 1 NC_016863.1 similar to Escherichia coli high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein (AAC76751.1); ABC superfamily binding protein; phosphate ABC transporter substrate-binding protein 4025925 pstS 990282003843 pstS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphate ABC transporter substrate-binding protein YP_005254323.1 4024885 R 990282 CDS YP_005254324.1 378991160 complement(4026092..4027465) 1 NC_016863.1 similar to Escherichia coli PTS system; fructose-specific transport protein (AAC75228.1); putative phosphotransferase system fructose-specific component IIB 4027465 990282003844 STMUK_3847 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphotransferase system fructose-specific component IIB YP_005254324.1 4026092 R 990282 CDS YP_005254325.1 378991161 complement(4027514..4028332) 1 NC_016863.1 catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 4028332 aroE 990282003845 aroE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 shikimate 5-dehydrogenase YP_005254325.1 4027514 R 990282 CDS YP_005254326.1 378991162 4028427..4030184 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC73180.1); putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component 4030184 990282003846 STMUK_3849 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component YP_005254326.1 4028427 D 990282 CDS YP_005254327.1 378991163 complement(4030335..4032164) 1 NC_016863.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 4032164 glmS 990282003847 glmS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucosamine--fructose-6-phosphate aminotransferase YP_005254327.1 4030335 R 990282 CDS YP_005254328.1 378991164 complement(4032353..4033723) 1 NC_016863.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 4033723 glmU 990282003848 glmU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_005254328.1 4032353 R 990282 CDS YP_005254329.1 378991165 complement(4034043..4034741) 1 NC_016863.1 putative permease 4034741 990282003849 STMUK_3852 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005254329.1 4034043 R 990282 CDS YP_005254330.1 378991166 complement(4034970..4035389) 1 NC_016863.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 4035389 atpC 990282003850 atpC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 F0F1 ATP synthase subunit epsilon YP_005254330.1 4034970 R 990282 CDS YP_005254331.1 378991167 complement(4035410..4036792) 1 NC_016863.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 4036792 atpD 990282003851 atpD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 F0F1 ATP synthase subunit beta YP_005254331.1 4035410 R 990282 CDS YP_005254332.1 378991168 complement(4036819..4037682) 1 NC_016863.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 4037682 atpG 990282003852 atpG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 F0F1 ATP synthase subunit gamma YP_005254332.1 4036819 R 990282 CDS YP_005254333.1 378991169 complement(4037733..4039274) 1 NC_016863.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 4039274 atpA 990282003853 atpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 F0F1 ATP synthase subunit alpha YP_005254333.1 4037733 R 990282 CDS YP_005254334.1 378991170 complement(4039287..4039820) 1 NC_016863.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 4039820 atpH 990282003854 atpH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 F0F1 ATP synthase subunit delta YP_005254334.1 4039287 R 990282 CDS YP_005254335.1 378991171 complement(4039835..4040305) 1 NC_016863.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 4040305 atpF 990282003855 atpF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 F0F1 ATP synthase subunit B YP_005254335.1 4039835 R 990282 CDS YP_005254336.1 378991172 complement(4040365..4040604) 1 NC_016863.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 4040604 atpE 990282003856 atpE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 F0F1 ATP synthase subunit C YP_005254336.1 4040365 R 990282 CDS YP_005254337.1 378991173 complement(4040651..4041466) 1 NC_016863.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 4041466 atpB 990282003857 atpB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 F0F1 ATP synthase subunit A YP_005254337.1 4040651 R 990282 CDS YP_005254338.1 378991174 complement(4041475..4041855) 1 NC_016863.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 4041855 atpI 990282003858 atpI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 F0F1 ATP synthase subunit I YP_005254338.1 4041475 R 990282 CDS YP_005254339.1 378991175 complement(4042471..4043094) 1 NC_016863.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4043094 gidB 990282003859 gidB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 16S rRNA methyltransferase GidB YP_005254339.1 4042471 R 990282 CDS YP_005254340.1 378991176 complement(4043197..4045086) 1 NC_016863.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 4045086 gidA 990282003860 gidA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_005254340.1 4043197 R 990282 CDS YP_005254341.1 378991177 complement(4045465..4045908) 1 NC_016863.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 4045908 mioC 990282003861 mioC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flavodoxin YP_005254341.1 4045465 R 990282 CDS YP_005254342.1 378991178 complement(4045998..4046456) 1 NC_016863.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 4046456 asnC 990282003862 asnC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator AsnC YP_005254342.1 4045998 R 990282 CDS YP_005254343.1 378991179 4046607..4047599 1 NC_016863.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 4047599 asnA 990282003863 asnA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 asparagine synthetase AsnA YP_005254343.1 4046607 D 990282 CDS YP_005254344.1 378991180 complement(4047604..4049028) 1 NC_016863.1 contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein 4049028 yieM 990282003864 yieM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254344.1 4047604 R 990282 CDS YP_005254345.1 378991181 complement(4049049..4050545) 1 NC_016863.1 interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; regulatory ATPase RavA 4050545 yieN 990282003865 yieN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 regulatory ATPase RavA YP_005254345.1 4049049 R 990282 CDS YP_005254346.1 378991182 4050893..4052761 1 NC_016863.1 Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 4052761 trkD 990282003866 trkD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 potassium transport protein Kup YP_005254346.1 4050893 D 990282 CDS YP_005254347.1 378991183 4052958..4053377 1 NC_016863.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 4053377 rbsD 990282003867 rbsD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-ribose pyranase YP_005254347.1 4052958 D 990282 CDS YP_005254348.1 378991184 4053385..4054890 1 NC_016863.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP-binding protein 4054890 rbsA 990282003868 rbsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-ribose transporter ATP-binding protein YP_005254348.1 4053385 D 990282 CDS YP_005254349.1 378991185 4054896..4055861 1 NC_016863.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 4055861 rbsC 990282003869 rbsC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribose ABC transporter permease YP_005254349.1 4054896 D 990282 CDS YP_005254350.1 378991186 4055886..4056776 1 NC_016863.1 periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 4056776 rbsB 990282003870 rbsB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-ribose transporter subunit RbsB YP_005254350.1 4055886 D 990282 CDS YP_005254351.1 378991187 4056909..4057838 1 NC_016863.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 4057838 rbsK 990282003871 rbsK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribokinase YP_005254351.1 4056909 D 990282 CDS YP_005254352.1 378991188 4057842..4058840 1 NC_016863.1 DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 4058840 rbsR 990282003872 rbsR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional repressor RbsR YP_005254352.1 4057842 D 990282 CDS YP_005254353.1 378991189 complement(4058806..4060233) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC76777.1); MFS family; 1st module; putative tranport protein 4060233 yieO 990282003873 yieO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative tranport protein YP_005254353.1 4058806 R 990282 CDS YP_005254354.1 378991190 complement(4060245..4060949) 1 NC_016863.1 GntR family; putative regulatory protein 4060949 yieP 990282003874 yieP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005254354.1 4060245 R 990282 CDS YP_005254355.1 378991191 complement(4066842..4067690) 1 NC_016863.1 Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR 4067690 yifA 990282003881 yifA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator HdfR YP_005254355.1 4066842 R 990282 CDS YP_005254356.1 378991192 4067797..4068135 1 NC_016863.1 LysR type regulator; with pssR; hypothetical protein 4068135 yifE 990282003882 yifE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254356.1 4067797 D 990282 CDS YP_005254357.1 378991193 complement(4068160..4069680) 1 NC_016863.1 among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; putative ATP-dependent protease 4069680 yifB 990282003883 yifB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ATP-dependent protease YP_005254357.1 4068160 R 990282 CDS YP_005254358.1 378991194 4070032..4070130 1 NC_016863.1 ilvGmedA operon leader peptide; attenuator peptide (SW:LPID_ECOLI); ilvG operon leader peptide 4070130 ilvL 990282003884 ilvL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ilvG operon leader peptide YP_005254358.1 4070032 D 990282 CDS YP_005254359.1 378991195 4070270..4071916 1 NC_016863.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4071916 ilvG 990282003885 ilvG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetolactate synthase 2 catalytic subunit YP_005254359.1 4070270 D 990282 CDS YP_005254360.1 378991196 4071916..4072176 1 NC_016863.1 similar to Escherichia coli acetolactate synthase II; valine insensitive (AAC77489.1); acetolactate synthase 2 regulatory subunit 4072176 ilvM 990282003886 ilvM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetolactate synthase 2 regulatory subunit YP_005254360.1 4071916 D 990282 CDS YP_005254361.1 378991197 4072194..4073123 1 NC_016863.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4073123 ilvE 990282003887 ilvE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 branched-chain amino acid aminotransferase YP_005254361.1 4072194 D 990282 CDS YP_005254362.1 378991198 4073284..4075134 1 NC_016863.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4075134 ilvD 990282003888 ilvD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dihydroxy-acid dehydratase YP_005254362.1 4073284 D 990282 CDS YP_005254363.1 378991199 4075137..4076681 1 NC_016863.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4076681 ilvA 990282003889 ilvA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 threonine dehydratase YP_005254363.1 4075137 D 990282 CDS YP_005254364.1 378991200 4076965..4077282 1 NC_016863.1 putative cytoplasmic protein 4077282 990282003890 STMUK_3893 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254364.1 4076965 D 990282 CDS YP_005254365.1 378991201 4077279..4077620 1 NC_016863.1 putative cytoplasmic protein 4077620 990282003891 STMUK_3894 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254365.1 4077279 D 990282 CDS YP_005254366.1 378991202 complement(4077623..4078510) 1 NC_016863.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4078510 ilvY 990282003892 ilvY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator IlvY YP_005254366.1 4077623 R 990282 CDS YP_005254367.1 378991203 4078674..4080149 1 NC_016863.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 4080149 ilvC 990282003893 ilvC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ketol-acid reductoisomerase YP_005254367.1 4078674 D 990282 CDS YP_005254368.1 378991204 complement(4080241..4080522) 1 NC_016863.1 similar to Escherichia coli peptidyl-prolyl cis-trans isomerase C; rotamase C (AAC76780.1); peptidyl-prolyl cis-trans isomerase C 4080522 ppiC 990282003894 ppiC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptidyl-prolyl cis-trans isomerase C YP_005254368.1 4080241 R 990282 CDS YP_005254369.1 378991205 4080811..4080960 1 NC_016863.1 similar to Escherichia coli required for NMN transport (AAC73838.1); putative inner membrane protein 4080960 990282003895 STMUK_3898 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254369.1 4080811 D 990282 CDS YP_005254370.1 378991206 4081060..4083084 1 NC_016863.1 single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 4083084 rep 990282003896 rep Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent DNA helicase Rep YP_005254370.1 4081060 D 990282 CDS YP_005254371.1 378991207 complement(4083124..4084605) 1 NC_016863.1 catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine pentaphosphate phosphohydrolase 4084605 gppA 990282003897 gppA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 guanosine pentaphosphate phosphohydrolase YP_005254371.1 4083124 R 990282 CDS YP_005254372.1 378991208 complement(4084724..4085989) 1 NC_016863.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 4085989 rhlB 990282003898 rhlB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent RNA helicase RhlB YP_005254372.1 4084724 R 990282 CDS YP_005254373.1 378991209 4086133..4086462 1 NC_016863.1 thioredoxin 1; TRX1; TRX (SW:THIO_ECOLI); redox factor; thioredoxin 4086462 trxA 990282003899 trxA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thioredoxin YP_005254373.1 4086133 D 990282 CDS YP_005254374.1 378991210 4086881..4088140 1 NC_016863.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4088140 rho 990282003900 rho Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcription termination factor Rho YP_005254374.1 4086881 D 990282 CDS YP_005254375.1 378991211 4088370..4089473 1 NC_016863.1 similar to Escherichia coli UDP-GlcNAc-undecaprenylphosphate GlcNAc-1-phosphate transferase; synthesis of enterobacterial common antigen; ECA (AAC76789.1); undecaprenyl-phosphate N-acetylglucosaminyltransferase 4089473 rfe 990282003901 rfe Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 undecaprenyl-phosphate N-acetylglucosaminyltransferase YP_005254375.1 4088370 D 990282 CDS YP_005254376.1 378991212 4089485..4090531 1 NC_016863.1 Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4090531 wzzE 990282003902 wzzE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipopolysaccharide biosynthesis protein WzzE YP_005254376.1 4089485 D 990282 CDS YP_005254377.1 378991213 4090587..4091717 1 NC_016863.1 similar to Escherichia coli UDP-N-acetyl glucosamine-2-epimerase; synthesis of enterobacterial common antigen; ECA (AAC76791.1); UDP-N-acetyl glucosamine-2-epimerase 4091717 wecB 990282003903 wecB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-N-acetyl glucosamine-2-epimerase YP_005254377.1 4090587 D 990282 CDS YP_005254378.1 378991214 4091714..4092976 1 NC_016863.1 catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4092976 wecC 990282003904 wecC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-N-acetyl-D-mannosamine dehydrogenase YP_005254378.1 4091714 D 990282 CDS YP_005254379.1 378991215 4092976..4094043 1 NC_016863.1 similar to Escherichia coli dTDP-glucose 4,6-dehydratase (AAC76793.1); dTDP-glucose 4,6-dehydratase 4094043 rffG 990282003905 rffG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dTDP-glucose 4,6-dehydratase YP_005254379.1 4092976 D 990282 CDS YP_005254380.1 378991216 4094076..4094300 1 NC_016863.1 similar to Escherichia coli glucose-1-phosphate thymidylyltransferase (AAC76794.1); glucose-1-phosphate thymidylyltransferase 4094300 rffH 990282003906 rffH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucose-1-phosphate thymidylyltransferase YP_005254380.1 4094076 D 990282 CDS YP_005254381.1 378991217 4094407..4094955 1 NC_016863.1 TDP-fucosamine acetyltransferase 4094955 wecD 990282003907 wecD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 TDP-fucosamine acetyltransferase YP_005254381.1 4094407 D 990282 CDS YP_005254382.1 378991218 4094960..4096090 1 NC_016863.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4096090 wecE 990282003908 wecE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 TDP-4-oxo-6-deoxy-D-glucose transaminase YP_005254382.1 4094960 D 990282 CDS YP_005254383.1 378991219 4096092..4097342 1 NC_016863.1 similar to Escherichia coli putative cytochrome (AAC76797.1); involved in LPS biosynthesis; O-antigen translocase 4097342 wzxE 990282003909 wzxE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 O-antigen translocase YP_005254383.1 4096092 D 990282 CDS YP_005254384.1 378991220 4097339..4098418 1 NC_016863.1 catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4098418 990282003910 STMUK_3913 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-alpha-L-fucosyltransferase YP_005254384.1 4097339 D 990282 CDS YP_005254385.1 378991221 4098415..4099773 1 NC_016863.1 enterobacterial common antigen polymerase; putative common antigen polymerase 4099773 wecF 990282003911 wecF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative common antigen polymerase YP_005254385.1 4098415 D 990282 CDS YP_005254386.1 378991222 4099770..4100510 1 NC_016863.1 probable UDP-N-acetyl-D-mannosaminuronic acid transferase (SW:WECG_SALTY); putative UDP-N-acetyl-D-mannosaminuronic acid transferase 4100510 wecG 990282003912 wecG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative UDP-N-acetyl-D-mannosaminuronic acid transferase YP_005254386.1 4099770 D 990282 CDS YP_005254387.1 378991223 4100717..4102102 1 NC_016863.1 uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; putative transport protein YifK 4102102 yifK 990282003913 yifK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YifK YP_005254387.1 4100717 D 990282 CDS YP_005254388.1 378991224 complement(4103219..4104418) 1 NC_016863.1 similar to Escherichia coli protein involved in a late step of protoheme IX synthesis (AAC76805.1); putative protoheme IX biogenesis protein 4104418 hemY 990282003918 hemY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative protoheme IX biogenesis protein YP_005254388.1 4103219 R 990282 CDS YP_005254389.1 378991225 complement(4104418..4105587) 1 NC_016863.1 similar to Escherichia coli uroporphyrinogen III methylase (AAC76806.1); putative uroporphyrinogen III C-methyltransferase 4105587 hemX 990282003919 hemX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative uroporphyrinogen III C-methyltransferase YP_005254389.1 4104418 R 990282 CDS YP_005254390.1 378991226 complement(4105609..4106349) 1 NC_016863.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 4106349 hemD 990282003920 hemD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 uroporphyrinogen-III synthase YP_005254390.1 4105609 R 990282 CDS YP_005254391.1 378991227 complement(4106346..4107302) 1 NC_016863.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4107302 hemC 990282003921 hemC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 porphobilinogen deaminase YP_005254391.1 4106346 R 990282 CDS YP_005254392.1 378991228 4107664..4110210 1 NC_016863.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4110210 cyaA 990282003922 cyaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 adenylate cyclase YP_005254392.1 4107664 D 990282 CDS YP_005254393.1 378991229 4110318..4110671 1 NC_016863.1 putative inner membrane protein 4110671 990282003923 STMUK_3926 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254393.1 4110318 D 990282 CDS YP_005254394.1 378991230 4110857..4111399 1 NC_016863.1 putative inner membrane protein 4111399 990282003924 STMUK_3927 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254394.1 4110857 D 990282 CDS YP_005254395.1 378991231 4111411..4111773 1 NC_016863.1 putative cytoplasmic protein 4111773 990282003925 STMUK_3928 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254395.1 4111411 D 990282 CDS YP_005254396.1 378991232 complement(4111844..4112164) 1 NC_016863.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 4112164 cyaY 990282003926 cyaY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 frataxin-like protein YP_005254396.1 4111844 R 990282 CDS YP_005254397.1 378991233 complement(4112234..4112623) 1 NC_016863.1 putative inner membrane protein 4112623 990282003927 STMUK_3930 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254397.1 4112234 R 990282 CDS YP_005254398.1 378991234 4113319..4113522 1 NC_016863.1 putative outer membrane lipoprotein 4113522 yifL 990282003928 yifL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005254398.1 4113319 D 990282 CDS YP_005254399.1 378991235 4113556..4114383 1 NC_016863.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4114383 dapF 990282003929 dapF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 diaminopimelate epimerase YP_005254399.1 4113556 D 990282 CDS YP_005254400.1 378991236 4114380..4115087 1 NC_016863.1 hypothetical protein in dapF-xerC intergenic region (SW:YIGA_SALTY); hypothetical protein 4115087 yigA 990282003930 yigA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254400.1 4114380 D 990282 CDS YP_005254401.1 378991237 4115084..4115986 1 NC_016863.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d; site-specific tyrosine recombinase XerC 4115986 xerC 990282003931 xerC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 site-specific tyrosine recombinase XerC YP_005254401.1 4115084 D 990282 CDS YP_005254402.1 378991238 4115986..4116702 1 NC_016863.1 YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4116702 yigB 990282003932 yigB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 flavin mononucleotide phosphatase YP_005254402.1 4115986 D 990282 CDS YP_005254403.1 378991239 4116838..4119000 1 NC_016863.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch; DNA-dependent helicase II 4119000 uvrD 990282003933 uvrD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-dependent helicase II YP_005254403.1 4116838 D 990282 CDS YP_005254404.1 378991240 4119472..4120422 1 NC_016863.1 responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 4120422 corA 990282003934 corA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 magnesium/nickel/cobalt transporter CorA YP_005254404.1 4119472 D 990282 CDS YP_005254405.1 378991241 complement(4120471..4120851) 1 NC_016863.1 hypothetical 14.6 kDa protein in corA-rarD intergenic region (SW:YIGF_SALTY); putative inner membrane protein 4120851 yigF 990282003935 yigF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254405.1 4120471 R 990282 CDS YP_005254406.1 378991242 complement(4120867..4121325) 1 NC_016863.1 hypothetical protein 4121325 yigG 990282003936 yigG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254406.1 4120867 R 990282 CDS YP_005254407.1 378991243 complement(4121360..4122244) 1 NC_016863.1 chloramphenicol resistance 4122244 rarD 990282003937 rarD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chloramphenicol resistance YP_005254407.1 4121360 R 990282 CDS YP_005254408.1 378991244 complement(4122288..4122773) 1 NC_016863.1 hypothetical protein in rarD-pldA intergenic region (SW:YIGI_SALTY); possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein 4122773 yigI 990282003938 yigI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254408.1 4122288 R 990282 CDS YP_005254409.1 378991245 4122920..4123789 1 NC_016863.1 catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4123789 pldA 990282003939 pldA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phospholipase A YP_005254409.1 4122920 D 990282 CDS YP_005254410.1 378991246 4123855..4125702 1 NC_016863.1 functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ 4125702 recQ 990282003940 recQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent DNA helicase RecQ YP_005254410.1 4123855 D 990282 CDS YP_005254411.1 378991247 4125766..4126386 1 NC_016863.1 RhtB family; threonine efflux system 4126386 rhtC 990282003941 rhtC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 threonine efflux system YP_005254411.1 4125766 D 990282 CDS YP_005254412.1 378991248 complement(4126426..4127046) 1 NC_016863.1 homoserine/homoserine lactone efflux protein 4127046 rhtB 990282003942 rhtB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 homoserine/homoserine lactone efflux protein YP_005254412.1 4126426 R 990282 CDS YP_005254413.1 378991249 4127157..4128173 1 NC_016863.1 lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4128173 pldB 990282003943 pldB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lysophospholipase L2 YP_005254413.1 4127157 D 990282 CDS YP_005254414.1 378991250 4128189..4128989 1 NC_016863.1 purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium; putative sugar phosphatase 4128989 yigL 990282003944 yigL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar phosphatase YP_005254414.1 4128189 D 990282 CDS YP_005254415.1 378991251 4129070..4129969 1 NC_016863.1 putative transport protein 4129969 yigM 990282003945 yigM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005254415.1 4129070 D 990282 CDS YP_005254416.1 378991252 complement(4129857..4130810) 1 NC_016863.1 transcriptional activator protein metR (SW:METR_SALTY); LysR family; metE/metH regulator 4130810 metR 990282003946 metR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 metE/metH regulator YP_005254416.1 4129857 R 990282 CDS YP_005254417.1 378991253 4131059..4133323 1 NC_016863.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4133323 metE 990282003947 metE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_005254417.1 4131059 D 990282 CDS YP_005254418.1 378991254 4133667..4135010 1 NC_016863.1 similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); putative arylsulfatase regulator 4135010 990282003948 STMUK_3951 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative arylsulfatase regulator YP_005254418.1 4133667 D 990282 CDS YP_005254419.1 378991255 complement(4135090..4135902) 1 NC_016863.1 similar to Escherichia coli putative enzyme (AAC76833.1); putative dienelactone hydrolase 4135902 dlhH 990282003949 dlhH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dienelactone hydrolase YP_005254419.1 4135090 R 990282 CDS YP_005254420.1 378991256 4136161..4136922 1 NC_016863.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4136922 udp 990282003950 udp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 uridine phosphorylase YP_005254420.1 4136161 D 990282 CDS YP_005254421.1 378991257 4137062..4138492 1 NC_016863.1 YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in; DNA recombination protein RmuC 4138492 yigN 990282003951 yigN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA recombination protein RmuC YP_005254421.1 4137062 D 990282 CDS YP_005254422.1 378991258 4138588..4139343 1 NC_016863.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 4139343 ubiE 990282003952 ubiE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ubiquinone/menaquinone biosynthesis methyltransferase YP_005254422.1 4138588 D 990282 CDS YP_005254423.1 378991259 4139353..4139958 1 NC_016863.1 putative inner membrane protein 4139958 yigP 990282003953 yigP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254423.1 4139353 D 990282 CDS YP_005254424.1 378991260 4139955..4141595 1 NC_016863.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhi; putative ubiquinone biosynthesis protein UbiB 4141595 aarF 990282003954 aarF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ubiquinone biosynthesis protein UbiB YP_005254424.1 4139955 D 990282 CDS YP_005254425.1 378991261 4141801..4142055 1 NC_016863.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar; twin arginine translocase protein A 4142055 tatA 990282003955 tatA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 twin arginine translocase protein A YP_005254425.1 4141801 D 990282 CDS YP_005254426.1 378991262 4142059..4142607 1 NC_016863.1 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 4142607 tatB 990282003956 tatB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sec-independent translocase YP_005254426.1 4142059 D 990282 CDS YP_005254427.1 378991263 4142610..4143389 1 NC_016863.1 with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; twin-arginine protein translocation system subunit TatC 4143389 tatC 990282003957 tatC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 twin-arginine protein translocation system subunit TatC YP_005254427.1 4142610 D 990282 CDS YP_005254428.1 378991264 4143431..4144213 1 NC_016863.1 magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4144213 yigW 990282003958 yigW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNase TatD YP_005254428.1 4143431 D 990282 CDS YP_005254429.1 378991265 complement(4144221..4144709) 1 NC_016863.1 similar to Escherichia coli transcriptional activator that affects biosynthesis of lipopolysaccharide core, F pilin, and haemolysin (AAC76845.1); responsible for full expression of operons rfa, rfb, hly, tra, chu, cps, and kps; may suppress operon polarit; transcriptional activator RfaH 4144709 rfaH 990282003959 rfaH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional activator RfaH YP_005254429.1 4144221 R 990282 CDS YP_005254430.1 378991266 4144895..4146373 1 NC_016863.1 catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4146373 yigC 990282003960 yigC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_005254430.1 4144895 D 990282 CDS YP_005254431.1 378991267 4146459..4147160 1 NC_016863.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 4147160 fre 990282003961 fre Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 FMN reductase YP_005254431.1 4146459 D 990282 CDS YP_005254432.1 378991268 4147414..4149237 1 NC_016863.1 putative outer membrane protein 4149237 990282003962 STMUK_3965 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005254432.1 4147414 D 990282 CDS YP_005254433.1 378991269 complement(4149434..4150597) 1 NC_016863.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 4150597 fadA 990282003963 fadA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-ketoacyl-CoA thiolase YP_005254433.1 4149434 R 990282 CDS YP_005254434.1 378991270 complement(4150607..4152796) 1 NC_016863.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacy; multifunctional fatty acid oxidation complex subunit alpha 4152796 fadB 990282003964 fadB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 multifunctional fatty acid oxidation complex subunit alpha YP_005254434.1 4150607 R 990282 CDS YP_005254435.1 378991271 4152986..4154317 1 NC_016863.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 4154317 pepQ 990282003965 pepQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 proline dipeptidase YP_005254435.1 4152986 D 990282 CDS YP_005254436.1 378991272 4154317..4154931 1 NC_016863.1 hypothetical protein 4154931 yigZ 990282003966 yigZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254436.1 4154317 D 990282 CDS YP_005254437.1 378991273 4154970..4156421 1 NC_016863.1 similar to Escherichia coli potassium uptake, requires TrkE (AAC76852.1); Trk family; potassium transporter 4156421 trkH 990282003967 trkH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 potassium transporter YP_005254437.1 4154970 D 990282 CDS YP_005254438.1 378991274 4156433..4156978 1 NC_016863.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 4156978 hemG 990282003968 hemG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 protoporphyrinogen oxidase YP_005254438.1 4156433 D 990282 CDS YP_005254439.1 378991275 complement(4162874..4163389) 1 NC_016863.1 in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein MobB 4163389 mobB 990282003974 mobB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_005254439.1 4162874 R 990282 CDS YP_005254440.1 378991276 complement(4163386..4163970) 1 NC_016863.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4163970 mobA 990282003975 mobA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_005254440.1 4163386 R 990282 CDS YP_005254441.1 378991277 4164040..4164309 1 NC_016863.1 putative cytoplasmic protein 4164309 yihD 990282003976 yihD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254441.1 4164040 D 990282 CDS YP_005254442.1 378991278 4164386..4165372 1 NC_016863.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4165372 yihE 990282003977 yihE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 serine/threonine protein kinase YP_005254442.1 4164386 D 990282 CDS YP_005254443.1 378991279 4165389..4166012 1 NC_016863.1 thiol-disulfide interchange protein DabA precursor (SW:DSBA_SALTY); protein disulfide isomerase I 4166012 dsbA 990282003978 dsbA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 protein disulfide isomerase I YP_005254443.1 4165389 D 990282 CDS YP_005254444.1 378991280 complement(4166025..4166933) 1 NC_016863.1 similar to Escherichia coli putative endonuclease (AAC76860.1); putative acyltransferase 4166933 yihG 990282003979 yihG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acyltransferase YP_005254444.1 4166025 R 990282 CDS YP_005254445.1 378991281 4167321..4170107 1 NC_016863.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 4170107 polA 990282003980 polA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase I YP_005254445.1 4167321 D 990282 CDS YP_005254446.1 378991282 complement(4170442..4171074) 1 NC_016863.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 4171074 ysxC 990282003981 ysxC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribosome biogenesis GTP-binding protein YsxC YP_005254446.1 4170442 R 990282 CDS YP_005254447.1 378991283 4171314..4171538 1 NC_016863.1 putative cytoplasmic protein 4171538 990282003982 STMUK_3985 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254447.1 4171314 D 990282 CDS YP_005254448.1 378991284 4171657..4172172 1 NC_016863.1 hypothetical 19.2 kDa protein in polA-hemN intergenic region (SW:YIHI_SALTY); hypothetical protein 4172172 yihI 990282003983 yihI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254448.1 4171657 D 990282 CDS YP_005254449.1 378991285 4172361..4173734 1 NC_016863.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4173734 hemN 990282003984 hemN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 coproporphyrinogen III oxidase YP_005254449.1 4172361 D 990282 CDS YP_005254450.1 378991286 complement(4174047..4175456) 1 NC_016863.1 response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) 4175456 glnG 990282003985 glnG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrogen regulation protein NR(I) YP_005254450.1 4174047 R 990282 CDS YP_005254451.1 378991287 complement(4175465..4176514) 1 NC_016863.1 sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) 4176514 glnL 990282003986 glnL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nitrogen regulation protein NR(II) YP_005254451.1 4175465 R 990282 CDS YP_005254452.1 378991288 complement(4176789..4178198) 1 NC_016863.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltra; glutamine synthetase 4178198 glnA 990282003987 glnA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamine synthetase YP_005254452.1 4176789 R 990282 CDS YP_005254453.1 378991289 complement(4178177..4178605) 1 NC_016863.1 putative cytoplasmic protein 4178605 990282003988 STMUK_3991 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254453.1 4178177 R 990282 CDS YP_005254454.1 378991290 4178574..4180397 1 NC_016863.1 similar to Escherichia coli putative GTP-binding factor (AAC76868.1); GTP-binding protein 4180397 typA 990282003989 typA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GTP-binding protein YP_005254454.1 4178574 D 990282 CDS YP_005254455.1 378991291 complement(4180452..4181186) 1 NC_016863.1 similar to Escherichia coli putative phosphatase (AAC73853.1); putative hydrolase 4181186 990282003990 STMUK_3993 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hydrolase YP_005254455.1 4180452 R 990282 CDS YP_005254456.1 378991292 complement(4181171..4182049) 1 NC_016863.1 putative inner membrane protein 4182049 990282003991 STMUK_3994 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254456.1 4181171 R 990282 CDS YP_005254457.1 378991293 complement(4182046..4183287) 1 NC_016863.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4183287 990282003992 STMUK_3995 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 coproporphyrinogen III oxidase YP_005254457.1 4182046 R 990282 CDS YP_005254458.1 378991294 complement(4183289..4184164) 1 NC_016863.1 putative membrane-associated metal-dependent hydrolase 4184164 990282003993 STMUK_3996 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative membrane-associated metal-dependent hydrolase YP_005254458.1 4183289 R 990282 CDS YP_005254459.1 378991295 complement(4184157..4185182) 1 NC_016863.1 hypothetical protein 4185182 990282003994 STMUK_3997 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254459.1 4184157 R 990282 CDS YP_005254460.1 378991296 complement(4185195..4186043) 1 NC_016863.1 putative cytoplasmic protein 4186043 990282003995 STMUK_3998 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254460.1 4185195 R 990282 CDS YP_005254461.1 378991297 complement(4186200..4186892) 1 NC_016863.1 porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; outer membrane porin L 4186892 ompL 990282003996 ompL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane porin L YP_005254461.1 4186200 R 990282 CDS YP_005254462.1 378991298 complement(4186960..4188381) 1 NC_016863.1 similar to Escherichia coli putative permease (AAC76873.1); GPH family transport protein 4188381 yihO 990282003997 yihO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GPH family transport protein YP_005254462.1 4186960 R 990282 CDS YP_005254463.1 378991299 complement(4188427..4189809) 1 NC_016863.1 similar to Escherichia coli putative permease (AAC76874.1); GPH family transport protein 4189809 yihP 990282003998 yihP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 GPH family transport protein YP_005254463.1 4188427 R 990282 CDS YP_005254464.1 378991300 complement(4189855..4191891) 1 NC_016863.1 similar to Escherichia coli putative glycosidase (AAC76875.1); alpha-glucosidase 4191891 yihQ 990282003999 yihQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alpha-glucosidase YP_005254464.1 4189855 R 990282 CDS YP_005254465.1 378991301 complement(4191935..4192792) 1 NC_016863.1 similar to Escherichia coli putative aldose-1-epimerase (AAC76876.1); putative aldose-1-epimerase 4192792 yihR 990282004000 yihR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative aldose-1-epimerase YP_005254465.1 4191935 R 990282 CDS YP_005254466.1 378991302 complement(4192796..4194037) 1 NC_016863.1 putative isomerase 4194037 yihS 990282004001 yihS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative isomerase YP_005254466.1 4192796 R 990282 CDS YP_005254467.1 378991303 complement(4194053..4194931) 1 NC_016863.1 similar to Escherichia coli putative aldolase (AAD13443.1); putative aldolase 4194931 yihT 990282004002 yihT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative aldolase YP_005254467.1 4194053 R 990282 CDS YP_005254468.1 378991304 complement(4194954..4195850) 1 NC_016863.1 similar to Escherichia coli putative dehydrogenase (AAD13444.1); putative oxidoreductase 4195850 yihU 990282004003 yihU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative oxidoreductase YP_005254468.1 4194954 R 990282 CDS YP_005254469.1 378991305 4196015..4196911 1 NC_016863.1 similar to Escherichia coli putative kinase (AAD13445.1); putative sugar kinase 4196911 yihV 990282004004 yihV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar kinase YP_005254469.1 4196015 D 990282 CDS YP_005254470.1 378991306 4196945..4197748 1 NC_016863.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAD13446.1); DeoR family; putative glycerol-3-phosphate regulon repressor 4197748 yihW 990282004005 yihW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glycerol-3-phosphate regulon repressor YP_005254470.1 4196945 D 990282 CDS YP_005254471.1 378991307 4197939..4198538 1 NC_016863.1 similar to Escherichia coli putative phosphatase (AAD13447.1); phosphatase 4198538 yihX 990282004006 yihX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphatase YP_005254471.1 4197939 D 990282 CDS YP_005254472.1 378991308 4198532..4199404 1 NC_016863.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4199404 rbn 990282004007 rbn Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonuclease BN YP_005254472.1 4198532 D 990282 CDS YP_005254473.1 378991309 4199401..4199838 1 NC_016863.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4199838 yihZ 990282004008 yihZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-tyrosyl-tRNA(Tyr) deacylase YP_005254473.1 4199401 D 990282 CDS YP_005254474.1 378991310 4199835..4200824 1 NC_016863.1 similar to Escherichia coli putative acetyltransferase (AAD13450.1); putative acetyltransferase 4200824 yiiD 990282004009 yiiD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acetyltransferase YP_005254474.1 4199835 D 990282 CDS YP_005254475.1 378991311 complement(4200839..4201285) 1 NC_016863.1 putative cytoplasmic protein 4201285 990282004010 STMUK_4013 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254475.1 4200839 R 990282 CDS YP_005254476.1 378991312 complement(4201282..4201593) 1 NC_016863.1 putative cytoplasmic protein 4201593 990282004011 STMUK_4014 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254476.1 4201282 R 990282 CDS YP_005254477.1 378991313 complement(4201679..4202608) 1 NC_016863.1 similar to Escherichia coli putative lipase (AAC73578.1); putative acetyl esterase 4202608 990282004012 STMUK_4015 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acetyl esterase YP_005254477.1 4201679 R 990282 CDS YP_005254478.1 378991314 4202826..4203137 1 NC_016863.1 similar to hypothetical protein STM4032.2N (Pid: NP_945170.1).; hypothetical protein 4203137 990282004013 STMUK_4016 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254478.1 4202826 D 990282 CDS YP_005254479.1 378991315 4203174..4203428 1 NC_016863.1 merR family; putative regulatory protein 4203428 990282004014 STMUK_4017 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005254479.1 4203174 D 990282 CDS YP_005254480.1 378991316 complement(4203475..4204404) 1 NC_016863.1 required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE 4204404 fdhE 990282004015 fdhE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formate dehydrogenase accessory protein FdhE YP_005254480.1 4203475 R 990282 CDS YP_005254481.1 378991317 complement(4204401..4205036) 1 NC_016863.1 cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma 4205036 fdoI 990282004016 fdoI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formate dehydrogenase-O subunit gamma YP_005254481.1 4204401 R 990282 CDS YP_005254482.1 378991318 complement(4205033..4205935) 1 NC_016863.1 similar to Escherichia coli formate dehydrogenase-O iron-sulfur subunit (AAD13455.1); Fe-S subunit; formate dehydrogenase-O beta subunit 4205935 fdoH 990282004017 fdoH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formate dehydrogenase-O beta subunit YP_005254482.1 4205033 R 990282 CDS YP_005254483.1 378991319 4209193..4210029 1 NC_016863.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 4210029 fdhD 990282004019 fdhD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formate dehydrogenase accessory protein YP_005254483.1 4209193 D 990282 CDS YP_005254484.1 378991320 complement(4210297..4211328) 1 NC_016863.1 putative inner membrane lipoprotein 4211328 990282004020 STMUK_4023 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane lipoprotein YP_005254484.1 4210297 R 990282 CDS YP_005254485.1 378991321 4211553..4212611 1 NC_016863.1 putative cytoplasmic protein 4212611 yiiG 990282004021 yiiG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254485.1 4211553 D 990282 CDS YP_005254486.1 378991322 complement(4212966..4213289) 1 NC_016863.1 putative inner membrane protein 4213289 990282004022 STMUK_4025 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254486.1 4212966 R 990282 CDS YP_005254487.1 378991323 complement(4213289..4213948) 1 NC_016863.1 putative branched-chain amino acid permease 4213948 990282004023 STMUK_4026 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative branched-chain amino acid permease YP_005254487.1 4213289 R 990282 CDS YP_005254488.1 378991324 4214031..4214597 1 NC_016863.1 hypothetical protein 4214597 990282004024 STMUK_4027 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254488.1 4214031 D 990282 CDS YP_005254489.1 378991325 complement(4214686..4215000) 1 NC_016863.1 putative cytoplasmic protein 4215000 yiiL 990282004025 yiiL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254489.1 4214686 R 990282 CDS YP_005254490.1 378991326 complement(4214997..4216145) 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC76613.1); iron-containing; putative alcohol dehydrogenase 4216145 990282004026 STMUK_4029 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative alcohol dehydrogenase YP_005254490.1 4214997 R 990282 CDS YP_005254491.1 378991327 complement(4216272..4217099) 1 NC_016863.1 similar to Escherichia coli rhamnulose-phosphate aldolase (AAC76884.1); rhamnulose-1-phosphate aldolase 4217099 rhaD 990282004027 rhaD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 rhamnulose-1-phosphate aldolase YP_005254491.1 4216272 R 990282 CDS YP_005254492.1 378991328 complement(4217242..4218501) 1 NC_016863.1 catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase 4218501 rhaA 990282004028 rhaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-rhamnose isomerase YP_005254492.1 4217242 R 990282 CDS YP_005254493.1 378991329 complement(4218498..4219967) 1 NC_016863.1 catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase 4219967 rhaB 990282004029 rhaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 rhamnulokinase YP_005254493.1 4218498 R 990282 CDS YP_005254494.1 378991330 4220255..4221091 1 NC_016863.1 activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS 4221091 rhaS 990282004030 rhaS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional activator RhaS YP_005254494.1 4220255 D 990282 CDS YP_005254495.1 378991331 4221244..4222092 1 NC_016863.1 activates the expression of rhaRS in response to L-rhamnose; transcriptional activator RhaR 4222092 rhaR 990282004031 rhaR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional activator RhaR YP_005254495.1 4221244 D 990282 CDS YP_005254496.1 378991332 complement(4222089..4223123) 1 NC_016863.1 transports L-rhamnose and L-lyxose into the cell; rhamnose-proton symporter 4223123 rhaT 990282004032 rhaT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 rhamnose-proton symporter YP_005254496.1 4222089 R 990282 CDS YP_005254497.1 378991333 4223742..4224425 1 NC_016863.1 hypothetical 15.6 kDa protein in RhaT 5'region (SW:YIIY_SALTY); putative outer membrane protein 4224425 990282004033 STMUK_4036 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005254497.1 4223742 D 990282 CDS YP_005254498.1 378991334 complement(4224583..4225890) 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC76602.1); putative C4-dicarboxylate transport system 4225890 990282004034 STMUK_4037 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative C4-dicarboxylate transport system YP_005254498.1 4224583 R 990282 CDS YP_005254499.1 378991335 complement(4225883..4226398) 1 NC_016863.1 putative C4-dicarboxylate transport system 4226398 990282004035 STMUK_4038 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative C4-dicarboxylate transport system YP_005254499.1 4225883 R 990282 CDS YP_005254500.1 378991336 complement(4226417..4227400) 1 NC_016863.1 hypothetical protein in sodA 5'region (SW:YIIZ_SALTY); putative periplasmic dicarboxylate-binding protein 4227400 990282004036 STMUK_4039 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative periplasmic dicarboxylate-binding protein YP_005254500.1 4226417 R 990282 CDS YP_005254501.1 378991337 4227729..4228349 1 NC_016863.1 SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4228349 sodA 990282004037 sodA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 superoxide dismutase YP_005254501.1 4227729 D 990282 CDS YP_005254502.1 378991338 4228356..4229108 1 NC_016863.1 hypothetical protein 4229108 yiiM 990282004038 yiiM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254502.1 4228356 D 990282 CDS YP_005254503.1 378991339 4229120..4229515 1 NC_016863.1 putative inner membrane protein 4229515 990282004039 STMUK_4042 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254503.1 4229120 D 990282 CDS YP_005254504.1 378991340 complement(4229566..4230939) 1 NC_016863.1 part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 4230939 cpxA 990282004040 cpxA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 two-component sensor protein YP_005254504.1 4229566 R 990282 CDS YP_005254505.1 378991341 complement(4230936..4231634) 1 NC_016863.1 response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR 4231634 cpxR 990282004041 cpxR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator CpxR YP_005254505.1 4230936 R 990282 CDS YP_005254506.1 378991342 4231785..4232285 1 NC_016863.1 repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; repressor CpxP 4232285 cpxP 990282004042 cpxP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 repressor CpxP YP_005254506.1 4231785 D 990282 CDS YP_005254507.1 378991343 4232433..4233335 1 NC_016863.1 member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; ferrous iron efflux protein F 4233335 yiiP 990282004043 yiiP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ferrous iron efflux protein F YP_005254507.1 4232433 D 990282 CDS YP_005254508.1 378991344 4233520..4234482 1 NC_016863.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 4234482 pfkA 990282004044 pfkA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 6-phosphofructokinase YP_005254508.1 4233520 D 990282 CDS YP_005254509.1 378991345 4234686..4235675 1 NC_016863.1 sulfate-binding protein (SW:SUBI_SALTY); ABC superfamily binding protein; sulfate transporter subunit 4235675 sbp 990282004045 sbp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sulfate transporter subunit YP_005254509.1 4234686 D 990282 CDS YP_005254510.1 378991346 4235776..4236531 1 NC_016863.1 CDP-diacylglycerol pyrophosphatase (SW:CDH_SALTY); CDP-diacylglycerol pyrophosphatase 4236531 ushB 990282004046 ushB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 CDP-diacylglycerol pyrophosphatase YP_005254510.1 4235776 D 990282 CDS YP_005254511.1 378991347 4236794..4238128 1 NC_016863.1 putative Na+/galactoside symporter 4238128 990282004047 STMUK_4050 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative Na+/galactoside symporter YP_005254511.1 4236794 D 990282 CDS YP_005254512.1 378991348 4238139..4239098 1 NC_016863.1 phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase 4239098 990282004048 STMUK_4051 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aminoimidazole riboside kinase YP_005254512.1 4238139 D 990282 CDS YP_005254513.1 378991349 4239108..4240148 1 NC_016863.1 putative ADP-ribosylglycohydrolase 4240148 990282004049 STMUK_4052 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ADP-ribosylglycohydrolase YP_005254513.1 4239108 D 990282 CDS YP_005254514.1 378991350 4240211..4240933 1 NC_016863.1 similar to Escherichia coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); GntR family; putative regulatory protein 4240933 990282004050 STMUK_4053 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005254514.1 4240211 D 990282 CDS YP_005254515.1 378991351 4241031..4241195 1 NC_016863.1 hypothetical protein 4241195 990282004051 STMUK_4054 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254515.1 4241031 D 990282 CDS YP_005254516.1 378991352 4241211..4241342 1 NC_016863.1 similar to Escherichia coli CDP-diacylglycerol phosphotidylhydrolase (AAC76900.1); putative cytoplasmic protein 4241342 990282004052 STMUK_4055 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254516.1 4241211 D 990282 CDS YP_005254517.1 378991353 complement(4241432..4241698) 1 NC_016863.1 putative mannose-6-phosphate isomerase 4241698 990282004053 STMUK_4056 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative mannose-6-phosphate isomerase YP_005254517.1 4241432 R 990282 CDS YP_005254518.1 378991354 complement(4241796..4243388) 1 NC_016863.1 similar to Escherichia coli putative kinase (AAC74584.1); autoinducer-2 (AI-2) kinase 4243388 ydeV 990282004054 ydeV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 autoinducer-2 (AI-2) kinase YP_005254518.1 4241796 R 990282 CDS YP_005254519.1 378991355 complement(4243477..4244436) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator, sorC family (AAC74585.1); putative transcriptional repressor 4244436 ydeW 990282004055 ydeW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional repressor YP_005254519.1 4243477 R 990282 CDS YP_005254520.1 378991356 4244692..4246227 1 NC_016863.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC74586.1); putative ABC-type aldose transport system ATPase component 4246227 ego 990282004056 ego Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type aldose transport system ATPase component YP_005254520.1 4244692 D 990282 CDS YP_005254521.1 378991357 4246221..4247264 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein (AAC74587.1); putative ABC superfamily membrane protein; putative sugar transport protein 4247264 ydeY 990282004057 ydeY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar transport protein YP_005254521.1 4246221 D 990282 CDS YP_005254522.1 378991358 4247261..4248262 1 NC_016863.1 similar to Escherichia coli putative transport system permease protein (AAC74588.1); putative ABC superfamily membrane protein; putative sugar transport protein 4248262 ydeZ 990282004058 ydeZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar transport protein YP_005254522.1 4247261 D 990282 CDS YP_005254523.1 378991359 4248291..4249313 1 NC_016863.1 similar to Escherichia coli putative LacI-type transcriptional regulator (AAC74589.1); putative ABC superfamily periplasmic protein; putative sugar transport protein 4249313 yneA 990282004059 yneA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar transport protein YP_005254523.1 4248291 D 990282 CDS YP_005254524.1 378991360 4249342..4250217 1 NC_016863.1 aldolase 4250217 yneB 990282004060 yneB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aldolase YP_005254524.1 4249342 D 990282 CDS YP_005254525.1 378991361 4250297..4250590 1 NC_016863.1 autoinducer-2 (AI-2) modifying protein LsrG 4250590 yneC 990282004061 yneC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 autoinducer-2 (AI-2) modifying protein LsrG YP_005254525.1 4250297 D 990282 CDS YP_005254526.1 378991362 4250600..4251364 1 NC_016863.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; epimerase 4251364 990282004062 STMUK_4065 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 epimerase YP_005254526.1 4250600 D 990282 CDS YP_005254527.1 378991363 complement(4251456..4252223) 1 NC_016863.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 4252223 tpiA 990282004063 tpiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 triosephosphate isomerase YP_005254527.1 4251456 R 990282 CDS YP_005254528.1 378991364 complement(4252336..4252932) 1 NC_016863.1 hypothetical protein 4252932 yiiQ 990282004064 yiiQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254528.1 4252336 R 990282 CDS YP_005254529.1 378991365 4253033..4253461 1 NC_016863.1 putative inner membrane protein 4253461 yiiR 990282004065 yiiR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254529.1 4253033 D 990282 CDS YP_005254530.1 378991366 complement(4253568..4254314) 1 NC_016863.1 similar to Escherichia coli ferredoxin-NADP reductase (AAC76906.1); ferredoxin-NADP reductase 4254314 fpr 990282004066 fpr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ferredoxin-NADP reductase YP_005254530.1 4253568 R 990282 CDS YP_005254531.1 378991367 complement(4254411..4255421) 1 NC_016863.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 4255421 glpX 990282004067 glpX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fructose 1,6-bisphosphatase II YP_005254531.1 4254411 R 990282 CDS YP_005254532.1 378991368 complement(4255533..4257041) 1 NC_016863.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 4257041 glpK 990282004068 glpK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycerol kinase YP_005254532.1 4255533 R 990282 CDS YP_005254533.1 378991369 complement(4257062..4257907) 1 NC_016863.1 similar to Escherichia coli facilitated diffusion of glycerol (AAC76909.1); MIP channel; glycerol diffusion 4257907 glpF 990282004069 glpF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycerol diffusion YP_005254533.1 4257062 R 990282 CDS YP_005254534.1 378991370 4258306..4258545 1 NC_016863.1 putative cytoplasmic protein 4258545 yiiU 990282004070 yiiU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254534.1 4258306 D 990282 CDS YP_005254535.1 378991371 complement(4258767..4259252) 1 NC_016863.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4259252 menG 990282004071 menG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribonuclease activity regulator protein RraA YP_005254535.1 4258767 R 990282 CDS YP_005254536.1 378991372 complement(4259345..4260274) 1 NC_016863.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4260274 menA 990282004072 menA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_005254536.1 4259345 R 990282 CDS YP_005254537.1 378991373 complement(4260341..4261672) 1 NC_016863.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4261672 hslU 990282004073 hslU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent protease ATP-binding subunit HslU YP_005254537.1 4260341 R 990282 CDS YP_005254538.1 378991374 complement(4261682..4262212) 1 NC_016863.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4262212 hslV 990282004074 hslV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ATP-dependent protease peptidase subunit YP_005254538.1 4261682 R 990282 CDS YP_005254539.1 378991375 complement(4262304..4263278) 1 NC_016863.1 similar to Escherichia coli essential cell division protein (AAC76915.1); cell division protein FtsN 4263278 ftsN 990282004075 ftsN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cell division protein FtsN YP_005254539.1 4262304 R 990282 CDS YP_005254540.1 378991376 complement(4263372..4264397) 1 NC_016863.1 negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR 4264397 cytR 990282004076 cytR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator CytR YP_005254540.1 4263372 R 990282 CDS YP_005254541.1 378991377 complement(4264552..4266750) 1 NC_016863.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 4266750 priA 990282004077 priA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 primosome assembly protein PriA YP_005254541.1 4264552 R 990282 CDS YP_005254542.1 378991378 4266954..4267166 1 NC_016863.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing B; 50S ribosomal protein L31 4267166 rpmE 990282004078 rpmE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L31 YP_005254542.1 4266954 D 990282 CDS YP_005254543.1 378991379 complement(4267212..4267874) 1 NC_016863.1 putative outer membrane lipoprotein 4267874 990282004079 STMUK_4082 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005254543.1 4267212 R 990282 CDS YP_005254544.1 378991380 complement(4268075..4269865) 1 NC_016863.1 putative arylsulfate sulfotransferase 4269865 990282004080 STMUK_4083 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative arylsulfate sulfotransferase YP_005254544.1 4268075 R 990282 CDS YP_005254545.1 378991381 complement(4270322..4270639) 1 NC_016863.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4270639 metJ 990282004081 metJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional repressor protein MetJ YP_005254545.1 4270322 R 990282 CDS YP_005254546.1 378991382 4270904..4272064 1 NC_016863.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 4272064 metB 990282004082 metB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cystathionine gamma-synthase YP_005254546.1 4270904 D 990282 CDS YP_005254547.1 378991383 4272067..4274499 1 NC_016863.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4274499 metM 990282004083 metM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional aspartate kinase II/homoserine dehydrogenase II YP_005254547.1 4272067 D 990282 CDS YP_005254548.1 378991384 complement(4274615..4275472) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75961.1); putative inner membrane protein 4275472 990282004084 STMUK_4087 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254548.1 4274615 R 990282 CDS YP_005254549.1 378991385 complement(4275475..4276473) 1 NC_016863.1 similar to hypothetical protein SPC_4212 (Pid: YP_002639716.1).; hypothetical protein 4276473 990282004085 STMUK_4088 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254549.1 4275475 R 990282 CDS YP_005254550.1 378991386 complement(4276708..4277832) 1 NC_016863.1 putative cytoplasmic protein 4277832 990282004086 STMUK_4089 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254550.1 4276708 R 990282 CDS YP_005254551.1 378991387 4277968..4279524 1 NC_016863.1 similar to Escherichia coli UDP-sugar hydrolase (AAC73582.1); similar to esterase; putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase 4279524 990282004087 STMUK_4090 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase YP_005254551.1 4277968 D 990282 CDS YP_005254552.1 378991388 4279719..4280609 1 NC_016863.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 4280609 metF 990282004088 metF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 5,10-methylenetetrahydrofolate reductase YP_005254552.1 4279719 D 990282 CDS YP_005254553.1 378991389 4280774..4282954 1 NC_016863.1 peroxidase/catalase HPI (SW:CATA_SALTY); hydroperoxidase 4282954 katG 990282004089 katG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydroperoxidase YP_005254553.1 4280774 D 990282 CDS YP_005254554.1 378991390 complement(4283012..4283635) 1 NC_016863.1 hypothetical protein 4283635 yijF 990282004090 yijF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254554.1 4283012 R 990282 CDS YP_005254555.1 378991391 complement(4283894..4284997) 1 NC_016863.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 4284997 gldA 990282004091 gldA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycerol dehydrogenase YP_005254555.1 4283894 R 990282 CDS YP_005254556.1 378991392 complement(4285009..4285671) 1 NC_016863.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase 4285671 talC 990282004092 talC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fructose-6-phosphate aldolase YP_005254556.1 4285009 R 990282 CDS YP_005254557.1 378991393 complement(4285682..4288183) 1 NC_016863.1 similar to Escherichia coli PEP-protein phosphotransferase system enzyme I (AAC76929.1); general PTS family; enzyme I; PEP-protein phosphotransferase 4288183 ptsA 990282004093 ptsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PEP-protein phosphotransferase YP_005254557.1 4285682 R 990282 CDS YP_005254558.1 378991394 4288492..4289571 1 NC_016863.1 FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site; putative fructose-like permease EIIC subunit 2 4289571 frwC 990282004094 frwC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fructose-like permease EIIC subunit 2 YP_005254558.1 4288492 D 990282 CDS YP_005254559.1 378991395 4289586..4289906 1 NC_016863.1 FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site o; putative PTS system fructose-like transporter subunit EIIB 4289906 frwB 990282004095 frwB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative PTS system fructose-like transporter subunit EIIB YP_005254559.1 4289586 D 990282 CDS YP_005254560.1 378991396 4290005..4292302 1 NC_016863.1 involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein; putative formate acetyltransferase 2 4292302 pflD 990282004096 pflD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative formate acetyltransferase 2 YP_005254560.1 4290005 D 990282 CDS YP_005254561.1 378991397 4292268..4293146 1 NC_016863.1 similar to Escherichia coli probable pyruvate formate lyase activating enzyme 2 (AAC76934.1); pyruvate formate lyase II activase 4293146 pflC 990282004097 pflC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyruvate formate lyase II activase YP_005254561.1 4292268 D 990282 CDS YP_005254562.1 378991398 4293148..4293501 1 NC_016863.1 FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog; putative fructose-like phosphotransferase EIIB subunit 3 4293501 frwD 990282004098 frwD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fructose-like phosphotransferase EIIB subunit 3 YP_005254562.1 4293148 D 990282 CDS YP_005254563.1 378991399 complement(4293488..4294339) 1 NC_016863.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC76936.1); AraC/XylS family; putative regulatory protein 4294339 yijO 990282004099 yijO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005254563.1 4293488 R 990282 CDS YP_005254564.1 378991400 complement(4294500..4296233) 1 NC_016863.1 hypothetical protein 4296233 yijP 990282004100 yijP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254564.1 4294500 R 990282 CDS YP_005254565.1 378991401 complement(4296444..4299095) 1 NC_016863.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4299095 ppc 990282004101 ppc Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoenolpyruvate carboxylase YP_005254565.1 4296444 R 990282 CDS YP_005254566.1 378991402 complement(4299464..4300615) 1 NC_016863.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 4300615 argE 990282004102 argE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetylornithine deacetylase YP_005254566.1 4299464 R 990282 CDS YP_005254567.1 378991403 4300704..4301708 1 NC_016863.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in; N-acetyl-gamma-glutamyl-phosphate reductase 4301708 argC 990282004103 argC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-acetyl-gamma-glutamyl-phosphate reductase YP_005254567.1 4300704 D 990282 CDS YP_005254568.1 378991404 4301716..4302492 1 NC_016863.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4302492 argB 990282004104 argB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetylglutamate kinase YP_005254568.1 4301716 D 990282 CDS YP_005254569.1 378991405 4302610..4303986 1 NC_016863.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4303986 argH 990282004105 argH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 argininosuccinate lyase YP_005254569.1 4302610 D 990282 CDS YP_005254570.1 378991406 4304271..4305188 1 NC_016863.1 Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 4305188 oxyR 990282004106 oxyR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator OxyR YP_005254570.1 4304271 D 990282 CDS YP_005254571.1 378991407 complement(4305171..4306571) 1 NC_016863.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 4306571 udhA 990282004107 udhA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 soluble pyridine nucleotide transhydrogenase YP_005254571.1 4305171 R 990282 CDS YP_005254572.1 378991408 4306770..4307405 1 NC_016863.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 4307405 yijC 990282004108 yijC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional repressor FabR YP_005254572.1 4306770 D 990282 CDS YP_005254573.1 378991409 4307421..4307780 1 NC_016863.1 hypothetical protein 4307780 yijD 990282004109 yijD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254573.1 4307421 D 990282 CDS YP_005254574.1 378991410 complement(4307827..4308927) 1 NC_016863.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 4308927 trmA 990282004110 trmA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA (uracil-5-)-methyltransferase YP_005254574.1 4307827 R 990282 CDS YP_005254575.1 378991411 4309301..4311145 1 NC_016863.1 involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter 4311145 btuB 990282004111 btuB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 vitamin B12/cobalamin outer membrane transporter YP_005254575.1 4309301 D 990282 CDS YP_005254576.1 378991412 4311090..4311941 1 NC_016863.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 4311941 murI 990282004112 murI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamate racemase YP_005254576.1 4311090 D 990282 CDS YP_005254577.1 378991413 4317859..4318887 1 NC_016863.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4318887 murB 990282004118 murB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-N-acetylenolpyruvoylglucosamine reductase YP_005254577.1 4317859 D 990282 CDS YP_005254578.1 378991414 4318884..4319846 1 NC_016863.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 4319846 birA 990282004119 birA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 biotin--protein ligase YP_005254578.1 4318884 D 990282 CDS YP_005254579.1 378991415 complement(4319881..4320831) 1 NC_016863.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 4320831 coaA 990282004120 coaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pantothenate kinase YP_005254579.1 4319881 R 990282 CDS YP_005254580.1 378991416 complement(4321040..4321213) 1 NC_016863.1 putative cytoplasmic protein 4321213 990282004121 STMUK_4124 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254580.1 4321040 R 990282 CDS YP_005254581.1 378991417 4321790..4322974 1 NC_016863.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promot; elongation factor Tu 4322974 tuf 990282004126 tuf Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 elongation factor Tu YP_005254581.1 4321790 D 990282 CDS YP_005254582.1 378991418 4323204..4323587 1 NC_016863.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 4323587 secE 990282004127 secE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 preprotein translocase subunit SecE YP_005254582.1 4323204 D 990282 CDS YP_005254583.1 378991419 4323589..4324134 1 NC_016863.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 4324134 nusG 990282004128 nusG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcription antitermination protein NusG YP_005254583.1 4323589 D 990282 CDS YP_005254584.1 378991420 4324292..4324720 1 NC_016863.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4324720 rplK 990282004129 rplK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L11 YP_005254584.1 4324292 D 990282 CDS YP_005254585.1 378991421 4324724..4325428 1 NC_016863.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 4325428 rplA 990282004130 rplA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L1 YP_005254585.1 4324724 D 990282 CDS YP_005254586.1 378991422 4325848..4326345 1 NC_016863.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4326345 rplJ 990282004131 rplJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L10 YP_005254586.1 4325848 D 990282 CDS YP_005254587.1 378991423 4326412..4326777 1 NC_016863.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimula; 50S ribosomal protein L7/L12 4326777 rplL 990282004132 rplL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L7/L12 YP_005254587.1 4326412 D 990282 CDS YP_005254588.1 378991424 4327095..4331123 1 NC_016863.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4331123 rpoB 990282004133 rpoB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-directed RNA polymerase subunit beta YP_005254588.1 4327095 D 990282 CDS YP_005254589.1 378991425 4331200..4335423 1 NC_016863.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4335423 rpoC 990282004134 rpoC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-directed RNA polymerase subunit beta' YP_005254589.1 4331200 D 990282 CDS YP_005254590.1 378991426 4335465..4335788 1 NC_016863.1 putative inner membrane protein 4335788 990282004135 STMUK_4138 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254590.1 4335465 D 990282 CDS YP_005254591.1 378991427 complement(4335794..4336138) 1 NC_016863.1 putative cytoplasmic protein 4336138 990282004136 STMUK_4139 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254591.1 4335794 R 990282 CDS YP_005254592.1 378991428 complement(4336092..4336229) 1 NC_016863.1 similar to hypothetical protein SARI_03506 (Pid: YP_001572473.1).; hypothetical protein 4336229 990282004137 STMUK_4140 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254592.1 4336092 R 990282 CDS YP_005254593.1 378991429 4336537..4337547 1 NC_016863.1 putative cytoplasmic protein 4337547 990282004138 STMUK_4141 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254593.1 4336537 D 990282 CDS YP_005254594.1 378991430 4337870..4338058 1 NC_016863.1 putative cytoplasmic protein 4338058 990282004139 STMUK_4142 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254594.1 4337870 D 990282 CDS YP_005254595.1 378991431 complement(4338209..4339342) 1 NC_016863.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an ir; thiamine biosynthesis protein ThiH 4339342 thiH 990282004140 thiH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiamine biosynthesis protein ThiH YP_005254595.1 4338209 R 990282 CDS YP_005254596.1 378991432 complement(4339339..4340109) 1 NC_016863.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4340109 thiG 990282004141 thiG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiazole synthase YP_005254596.1 4339339 R 990282 CDS YP_005254597.1 378991433 complement(4340111..4340311) 1 NC_016863.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 4340311 990282004142 STMUK_4145 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sulfur carrier protein ThiS YP_005254597.1 4340111 R 990282 CDS YP_005254598.1 378991434 complement(4340292..4341050) 1 NC_016863.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 4341050 thiF 990282004143 thiF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiamine biosynthesis protein ThiF YP_005254598.1 4340292 R 990282 CDS YP_005254599.1 378991435 complement(4341043..4341678) 1 NC_016863.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase 4341678 thiE 990282004144 thiE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiamine-phosphate pyrophosphorylase YP_005254599.1 4341043 R 990282 CDS YP_005254600.1 378991436 complement(4341678..4343573) 1 NC_016863.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 4343573 thiC 990282004145 thiC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiamine biosynthesis protein ThiC YP_005254600.1 4341678 R 990282 CDS YP_005254601.1 378991437 complement(4343937..4344425) 1 NC_016863.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 4344425 rsd 990282004146 rsd Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anti-RNA polymerase sigma 70 factor YP_005254601.1 4343937 R 990282 CDS YP_005254602.1 378991438 4344518..4345291 1 NC_016863.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4345291 nudC 990282004147 nudC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NADH pyrophosphatase YP_005254602.1 4344518 D 990282 CDS YP_005254603.1 378991439 4345332..4346396 1 NC_016863.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4346396 hemE 990282004148 hemE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 uroporphyrinogen decarboxylase YP_005254603.1 4345332 D 990282 CDS YP_005254604.1 378991440 4346406..4347077 1 NC_016863.1 Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and p; endonuclease V 4347077 nfi 990282004149 nfi Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 endonuclease V YP_005254604.1 4346406 D 990282 CDS YP_005254605.1 378991441 4347119..4347709 1 NC_016863.1 putative cytoplasmic protein 4347709 yjaG 990282004150 yjaG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254605.1 4347119 D 990282 CDS YP_005254606.1 378991442 4347896..4348168 1 NC_016863.1 histone-like DNA-binding protein; transcriptional regulator HU subunit alpha 4348168 hupA 990282004151 hupA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator HU subunit alpha YP_005254606.1 4347896 D 990282 CDS YP_005254607.1 378991443 4348180..4348872 1 NC_016863.1 putative inner membrane protein 4348872 yjaH 990282004152 yjaH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254607.1 4348180 D 990282 CDS YP_005254608.1 378991444 complement(4348914..4349369) 1 NC_016863.1 zinc resistance protein 4349369 zraP 990282004153 zraP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 zinc resistance protein YP_005254608.1 4348914 R 990282 CDS YP_005254609.1 378991445 4349623..4351020 1 NC_016863.1 sensor protein HydA (SW:HYDH_SALTY); in two component regulatory system with HydG; sensor protein ZraS 4351020 hydH 990282004154 hydH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sensor protein ZraS YP_005254609.1 4349623 D 990282 CDS YP_005254610.1 378991446 4351026..4352351 1 NC_016863.1 DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulatory protein ZraR 4352351 hydG 990282004155 hydG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulatory protein ZraR YP_005254610.1 4351026 D 990282 CDS YP_005254611.1 378991447 complement(4352348..4353637) 1 NC_016863.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 4353637 purD 990282004156 purD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoribosylamine--glycine ligase YP_005254611.1 4352348 R 990282 CDS YP_005254612.1 378991448 complement(4353649..4355238) 1 NC_016863.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4355238 purH 990282004157 purH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_005254612.1 4353649 R 990282 CDS YP_005254613.1 378991449 complement(4361392..4361829) 1 NC_016863.1 hypothetical protein in rrfE-metA intergenic region (SW:YJAB_SALTY); hypothetical protein 4361829 yjaB 990282004162 yjaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254613.1 4361392 R 990282 CDS YP_005254614.1 378991450 4361986..4362915 1 NC_016863.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4362915 metA 990282004163 metA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 homoserine O-succinyltransferase YP_005254614.1 4361986 D 990282 CDS YP_005254615.1 378991451 4363184..4364785 1 NC_016863.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4364785 aceB 990282004164 aceB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 malate synthase YP_005254615.1 4363184 D 990282 CDS YP_005254616.1 378991452 4364817..4366121 1 NC_016863.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 4366121 aceA 990282004165 aceA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 isocitrate lyase YP_005254616.1 4364817 D 990282 CDS YP_005254617.1 378991453 4366223..4367974 1 NC_016863.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4367974 aceK 990282004166 aceK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_005254617.1 4366223 D 990282 CDS YP_005254618.1 378991454 complement(4367938..4368345) 1 NC_016863.1 putative cytoplasmic protein 4368345 990282004167 STMUK_4170 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254618.1 4367938 R 990282 CDS YP_005254619.1 378991455 complement(4368356..4369180) 1 NC_016863.1 regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; IclR family transcriptional regulator 4369180 iclR 990282004168 iclR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 IclR family transcriptional regulator YP_005254619.1 4368356 R 990282 CDS YP_005254620.1 378991456 4369397..4373167 1 NC_016863.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4373167 metH 990282004169 metH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 B12-dependent methionine synthase YP_005254620.1 4369397 D 990282 CDS YP_005254621.1 378991457 4373434..4375065 1 NC_016863.1 hypothetical protein in metH-pepE intergenic region (SW:YJBB_SALTY); PNaS family; putative transport protein 4375065 yjbB 990282004170 yjbB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005254621.1 4373434 D 990282 CDS YP_005254622.1 378991458 complement(4375141..4375830) 1 NC_016863.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 4375830 pepE 990282004171 pepE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptidase E YP_005254622.1 4375141 R 990282 CDS YP_005254623.1 378991459 4375902..4376003 1 NC_016863.1 putative cytoplasmic protein 4376003 990282004172 STMUK_4175 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254623.1 4375902 D 990282 CDS YP_005254624.1 378991460 4376038..4376577 1 NC_016863.1 similar to Escherichia coli nucleoprotein/polynucleotide-associated enzyme (AAC73457.1); putative cytoplasmic protein 4376577 990282004173 STMUK_4176 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254624.1 4376038 D 990282 CDS YP_005254625.1 378991461 4376624..4377493 1 NC_016863.1 catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 4377493 yjbC 990282004174 yjbC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 23S rRNA pseudouridine synthase F YP_005254625.1 4376624 D 990282 CDS YP_005254626.1 378991462 complement(4377490..4377762) 1 NC_016863.1 hypothetical protein 4377762 yjbD 990282004175 yjbD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254626.1 4377490 R 990282 CDS YP_005254627.1 378991463 complement(4377860..4378801) 1 NC_016863.1 putative Na+-dependent transporter 4378801 990282004176 STMUK_4179 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative Na+-dependent transporter YP_005254627.1 4377860 R 990282 CDS YP_005254628.1 378991464 complement(4379063..4379791) 1 NC_016863.1 putative cytoplasmic protein 4379791 990282004177 STMUK_4180 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254628.1 4379063 R 990282 CDS YP_005254629.1 378991465 complement(4379988..4380278) 1 NC_016863.1 putative inner membrane protein 4380278 990282004178 STMUK_4181 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254629.1 4379988 R 990282 CDS YP_005254630.1 378991466 complement(4380527..4380982) 1 NC_016863.1 putative cytoplasmic protein 4380982 990282004179 STMUK_4182 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254630.1 4380527 R 990282 CDS YP_005254631.1 378991467 complement(4380979..4381584) 1 NC_016863.1 putative cytoplasmic protein 4381584 990282004180 STMUK_4183 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254631.1 4380979 R 990282 CDS YP_005254632.1 378991468 complement(4381589..4383334) 1 NC_016863.1 similar to Escherichia coli putative membrane protein (AAC74454.1); putative phage tail fiber protein H 4383334 990282004181 STMUK_4184 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage tail fiber protein H YP_005254632.1 4381589 R 990282 CDS YP_005254633.1 378991469 complement(4383337..4383969) 1 NC_016863.1 putative phage tail protein 4383969 990282004182 STMUK_4185 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage tail protein YP_005254633.1 4383337 R 990282 CDS YP_005254634.1 378991470 complement(4383962..4385077) 1 NC_016863.1 putative phage baseplate protein 4385077 990282004183 STMUK_4186 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage baseplate protein YP_005254634.1 4383962 R 990282 CDS YP_005254635.1 378991471 complement(4385068..4385427) 1 NC_016863.1 putative phage baseplate protein 4385427 990282004184 STMUK_4187 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage baseplate protein YP_005254635.1 4385068 R 990282 CDS YP_005254636.1 378991472 complement(4385591..4387138) 1 NC_016863.1 putative inner membrane protein 4387138 990282004185 STMUK_4188 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254636.1 4385591 R 990282 CDS YP_005254637.1 378991473 complement(4387138..4388067) 1 NC_016863.1 similar to Escherichia coli putative glycan biosynthesis enzyme (AAC75410.1); putative phage glycosyltransferase 4388067 990282004186 STMUK_4189 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage glycosyltransferase YP_005254637.1 4387138 R 990282 CDS YP_005254638.1 378991474 complement(4388064..4388426) 1 NC_016863.1 putative phage glucose translocase 4388426 990282004187 STMUK_4190 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage glucose translocase YP_005254638.1 4388064 R 990282 CDS YP_005254639.1 378991475 complement(4388754..4389476) 1 NC_016863.1 putative phage baseplate component 4389476 990282004188 STMUK_4191 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage baseplate component YP_005254639.1 4388754 R 990282 CDS YP_005254640.1 378991476 complement(4389486..4390529) 1 NC_016863.1 putative cytoplasmic protein 4390529 990282004189 STMUK_4192 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254640.1 4389486 R 990282 CDS YP_005254641.1 378991477 complement(4390517..4390726) 1 NC_016863.1 putative inner membrane protein 4390726 990282004190 STMUK_4193 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254641.1 4390517 R 990282 CDS YP_005254642.1 378991478 complement(4390726..4391679) 1 NC_016863.1 putative methyl-accepting chemotaxis protein 4391679 990282004191 STMUK_4194 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative methyl-accepting chemotaxis protein YP_005254642.1 4390726 R 990282 CDS YP_005254643.1 378991479 complement(4391679..4394033) 1 NC_016863.1 putative phage tail protein 4394033 990282004192 STMUK_4195 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage tail protein YP_005254643.1 4391679 R 990282 CDS YP_005254644.1 378991480 complement(4394218..4394535) 1 NC_016863.1 similar to hypothetical protein SeHA_C4551 (Pid: YP_002048200.1).; hypothetical protein 4394535 990282004193 STMUK_4196 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254644.1 4394218 R 990282 CDS YP_005254645.1 378991481 complement(4394587..4395111) 1 NC_016863.1 putative phage tail core protein 4395111 990282004194 STMUK_4197 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage tail core protein YP_005254645.1 4394587 R 990282 CDS YP_005254646.1 378991482 complement(4395111..4396538) 1 NC_016863.1 putative phage tail sheath protein 4396538 990282004195 STMUK_4198 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage tail sheath protein YP_005254646.1 4395111 R 990282 CDS YP_005254647.1 378991483 complement(4396528..4396725) 1 NC_016863.1 putative cytoplasmic protein 4396725 990282004196 STMUK_4199 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254647.1 4396528 R 990282 CDS YP_005254648.1 378991484 complement(4396722..4397177) 1 NC_016863.1 putative cytoplasmic protein 4397177 990282004197 STMUK_4200 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254648.1 4396722 R 990282 CDS YP_005254649.1 378991485 complement(4397337..4397651) 1 NC_016863.1 putative inner membrane protein 4397651 990282004198 STMUK_4201 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254649.1 4397337 R 990282 CDS YP_005254650.1 378991486 complement(4397664..4398269) 1 NC_016863.1 putative soluble lytic murein transglycosylase 4398269 990282004199 STMUK_4202 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative soluble lytic murein transglycosylase YP_005254650.1 4397664 R 990282 CDS YP_005254651.1 378991487 complement(4398272..4398559) 1 NC_016863.1 putative inner membrane protein 4398559 990282004200 STMUK_4203 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254651.1 4398272 R 990282 CDS YP_005254652.1 378991488 4399279..4399482 1 NC_016863.1 putative cytoplasmic protein 4399482 990282004201 STMUK_4204 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254652.1 4399279 D 990282 CDS YP_005254653.1 378991489 complement(4399615..4400964) 1 NC_016863.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 4400964 lysC 990282004202 lysC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aspartate kinase III YP_005254653.1 4399615 R 990282 CDS YP_005254654.1 378991490 4401309..4402958 1 NC_016863.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4402958 pgi 990282004203 pgi Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glucose-6-phosphate isomerase YP_005254654.1 4401309 D 990282 CDS YP_005254655.1 378991491 4403399..4403644 1 NC_016863.1 putative outer membrane protein 4403644 yjbE 990282004204 yjbE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005254655.1 4403399 D 990282 CDS YP_005254656.1 378991492 4403678..4404346 1 NC_016863.1 putative outer membrane lipoprotein 4404346 yjbF 990282004205 yjbF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005254656.1 4403678 D 990282 CDS YP_005254657.1 378991493 4404343..4405080 1 NC_016863.1 hypothetical protein 4405080 yjbG 990282004206 yjbG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254657.1 4404343 D 990282 CDS YP_005254658.1 378991494 4405080..4407176 1 NC_016863.1 putative outer membrane lipoprotein 4407176 yjbH 990282004207 yjbH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005254658.1 4405080 D 990282 CDS YP_005254659.1 378991495 4407319..4407729 1 NC_016863.1 phosphate-starvation-inducible protein PsiE 4407729 yjbA 990282004208 yjbA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphate-starvation-inducible protein PsiE YP_005254659.1 4407319 D 990282 CDS YP_005254660.1 378991496 complement(4407895..4408785) 1 NC_016863.1 with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease 4408785 malG 990282004209 malG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 maltose transporter permease YP_005254660.1 4407895 R 990282 CDS YP_005254661.1 378991497 complement(4408800..4410344) 1 NC_016863.1 with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein 4410344 malF 990282004210 malF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 maltose transporter membrane protein YP_005254661.1 4408800 R 990282 CDS YP_005254662.1 378991498 complement(4410476..4411675) 1 NC_016863.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter periplasmic protein 4411675 malE 990282004211 malE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 maltose ABC transporter periplasmic protein YP_005254662.1 4410476 R 990282 CDS YP_005254663.1 378991499 4412028..4413137 1 NC_016863.1 with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein 4413137 malK 990282004212 malK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 maltose/maltodextrin transporter ATP-binding protein YP_005254663.1 4412028 D 990282 CDS YP_005254664.1 378991500 4413226..4414584 1 NC_016863.1 porin involved in the transport of maltose and maltodextrins; maltoporin 4414584 lamB 990282004213 lamB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 maltoporin YP_005254664.1 4413226 D 990282 CDS YP_005254665.1 378991501 4414748..4415665 1 NC_016863.1 maltose operon periplasmic protein precursor (SW:MALM_SALTY); protein of mal regulon; maltose regulon periplasmic protein 4415665 malM 990282004214 malM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 maltose regulon periplasmic protein YP_005254665.1 4414748 D 990282 CDS YP_005254666.1 378991502 4415846..4416343 1 NC_016863.1 catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4416343 ubiC 990282004215 ubiC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chorismate pyruvate lyase YP_005254666.1 4415846 D 990282 CDS YP_005254667.1 378991503 4416357..4417229 1 NC_016863.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 4417229 ubiA 990282004216 ubiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4-hydroxybenzoate octaprenyltransferase YP_005254667.1 4416357 D 990282 CDS YP_005254668.1 378991504 complement(4417328..4419748) 1 NC_016863.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4419748 plsB 990282004217 plsB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glycerol-3-phosphate acyltransferase YP_005254668.1 4417328 R 990282 CDS YP_005254669.1 378991505 4419919..4420287 1 NC_016863.1 similar to Escherichia coli diacylglycerol kinase (AAC77012.1); diacylglycerol kinase 4420287 dgkA 990282004218 dgkA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 diacylglycerol kinase YP_005254669.1 4419919 D 990282 CDS YP_005254670.1 378991506 4420396..4421004 1 NC_016863.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 4421004 lexA 990282004219 lexA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 LexA repressor YP_005254670.1 4420396 D 990282 CDS YP_005254671.1 378991507 4421183..4422508 1 NC_016863.1 similar to Escherichia coli DNA-damage-inducible protein F (AAC77014.1); induced by UV and mitomycin C; SOS and lexA regulon; DNA-damage-inducible SOS response protein 4422508 dinF 990282004220 dinF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-damage-inducible SOS response protein YP_005254671.1 4421183 D 990282 CDS YP_005254672.1 378991508 4422505..4422618 1 NC_016863.1 putative cytoplasmic protein 4422618 990282004221 STMUK_4224 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254672.1 4422505 D 990282 CDS YP_005254673.1 378991509 4422637..4422849 1 NC_016863.1 unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; putative stress-response protein 4422849 yjbJ 990282004222 yjbJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative stress-response protein YP_005254673.1 4422637 D 990282 CDS YP_005254674.1 378991510 complement(4422948..4423463) 1 NC_016863.1 Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; zinc uptake transcriptional repressor 4423463 zur 990282004223 zur Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 zinc uptake transcriptional repressor YP_005254674.1 4422948 R 990282 CDS YP_005254675.1 378991511 4423710..4425020 1 NC_016863.1 similar to plasmid R64 TraF; conjugative transfer protein 4425020 990282004224 STMUK_4227 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer protein YP_005254675.1 4423710 D 990282 CDS YP_005254676.1 378991512 4425108..4426106 1 NC_016863.1 putative TIM-barrel enzyme; possibly dehydrogenases; nifR3 family; tRNA-dihydrouridine synthase A 4426106 yjbN 990282004225 yjbN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA-dihydrouridine synthase A YP_005254676.1 4425108 D 990282 CDS YP_005254677.1 378991513 4426274..4426516 1 NC_016863.1 coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; phage shock protein G 4426516 pspG 990282004226 pspG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phage shock protein G YP_005254677.1 4426274 D 990282 CDS YP_005254678.1 378991514 complement(4426691..4427674) 1 NC_016863.1 similar to Escherichia coli quinone oxidoreductase (AAC77021.1); NADPH-dependent; quinone oxidoreductase 4427674 qor 990282004227 qor Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 quinone oxidoreductase YP_005254678.1 4426691 R 990282 CDS YP_005254679.1 378991515 4427739..4429154 1 NC_016863.1 unwinds double stranded DNA; replicative DNA helicase 4429154 dnaB 990282004228 dnaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 replicative DNA helicase YP_005254679.1 4427739 D 990282 CDS YP_005254680.1 378991516 4429186..4430265 1 NC_016863.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4430265 alr 990282004229 alr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alanine racemase YP_005254680.1 4429186 D 990282 CDS YP_005254681.1 378991517 4430451..4431644 1 NC_016863.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4431644 tyrB 990282004230 tyrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aromatic amino acid aminotransferase YP_005254681.1 4430451 D 990282 CDS YP_005254682.1 378991518 4431831..4432544 1 NC_016863.1 Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase 4432544 aphA 990282004231 aphA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acid phosphatase/phosphotransferase YP_005254682.1 4431831 D 990282 CDS YP_005254683.1 378991519 4432673..4433089 1 NC_016863.1 putative cytoplasmic protein 4433089 yjbQ 990282004232 yjbQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254683.1 4432673 D 990282 CDS YP_005254684.1 378991520 4433092..4433448 1 NC_016863.1 putative cytoplasmic protein 4433448 yjbR 990282004233 yjbR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254684.1 4433092 D 990282 CDS YP_005254685.1 378991521 complement(4433449..4433787) 1 NC_016863.1 putative inner membrane protein 4433787 990282004234 STMUK_4237 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254685.1 4433449 R 990282 CDS YP_005254686.1 378991522 complement(4433774..4434229) 1 NC_016863.1 putative outer membrane lipoprotein 4434229 990282004235 STMUK_4238 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005254686.1 4433774 R 990282 CDS YP_005254687.1 378991523 complement(4434361..4437186) 1 NC_016863.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion h; excinuclease ABC subunit A 4437186 uvrA 990282004236 uvrA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 excinuclease ABC subunit A YP_005254687.1 4434361 R 990282 CDS YP_005254688.1 378991524 4437151..4437267 1 NC_016863.1 putative cytoplasmic protein 4437267 990282004237 STMUK_4240 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254688.1 4437151 D 990282 CDS YP_005254689.1 378991525 4437434..4437964 1 NC_016863.1 binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 4437964 ssb 990282004238 ssb Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 single-stranded DNA-binding protein YP_005254689.1 4437434 D 990282 CDS YP_005254690.1 378991526 4439005..4439637 1 NC_016863.1 putative inner membrane or exported protein spi4_A (gi|7467268); hypothetical protein 4439637 990282004239 STMUK_4242 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254690.1 4439005 D 990282 CDS YP_005254691.1 378991527 4439634..4441022 1 NC_016863.1 hypothetical protein spi4_A (gi|7467268); putative methyl-accepting chemotaxis protein 4441022 990282004240 STMUK_4243 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative methyl-accepting chemotaxis protein YP_005254691.1 4439634 D 990282 CDS YP_005254692.1 378991528 4441012..4442331 1 NC_016863.1 similar to ABC exporter outer membrane component (gi|7467234); putative ABC exporter outer membrane component 4442331 990282004241 STMUK_4244 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC exporter outer membrane component YP_005254692.1 4441012 D 990282 CDS YP_005254693.1 378991529 4442328..4443605 1 NC_016863.1 membrane permease; HlyD secretion protein (gi|7467244); cation efflux pump 4443605 990282004242 STMUK_4245 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cation efflux pump YP_005254693.1 4442328 D 990282 CDS YP_005254694.1 378991530 4443622..4460301 1 NC_016863.1 fusion of two Salmonella typhimurium hypothetical proteins (gi|7467255) and (gi|7467255); may contain rearrangements with respect to similar proteins; putative inner membrane protein 4460301 990282004243 STMUK_4246 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254694.1 4443622 D 990282 CDS YP_005254695.1 378991531 4460341..4462407 1 NC_016863.1 similar to leukotoxin expression protein B (gi|7467272); contains an N-terminal double-glycine peptidase domain; putative ABC-type bacteriocin/lantibiotic exporter 4462407 990282004244 STMUK_4247 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type bacteriocin/lantibiotic exporter YP_005254695.1 4460341 D 990282 CDS YP_005254696.1 378991532 complement(4462685..4462966) 1 NC_016863.1 putative inner membrane protein 4462966 yjcB 990282004245 yjcB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254696.1 4462685 R 990282 CDS YP_005254697.1 378991533 4463529..4465130 1 NC_016863.1 diguanylate cyclase 4465130 yjcC 990282004246 yjcC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 diguanylate cyclase YP_005254697.1 4463529 D 990282 CDS YP_005254698.1 378991534 complement(4465118..4465441) 1 NC_016863.1 regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS 4465441 soxS 990282004247 soxS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator SoxS YP_005254698.1 4465118 R 990282 CDS YP_005254699.1 378991535 4465528..4465986 1 NC_016863.1 redox-sensitive transcriptional activator SOXR (SW:SOXR_SALTY); MerR family; contains iron-sulfur center for redox-sensing; redox-sensing transcriptional activator 4465986 soxR 990282004248 soxR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 redox-sensing transcriptional activator YP_005254699.1 4465528 D 990282 CDS YP_005254700.1 378991536 4466279..4466947 1 NC_016863.1 putative glutathione S-transferase 4466947 990282004249 STMUK_4252 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glutathione S-transferase YP_005254700.1 4466279 D 990282 CDS YP_005254701.1 378991537 4467294..4468643 1 NC_016863.1 xanthine/uracil permease family; hypothetical protein 4468643 yjcD 990282004250 yjcD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254701.1 4467294 D 990282 CDS YP_005254702.1 378991538 4468793..4470439 1 NC_016863.1 putative CPA1 family; Na/H transport protein 4470439 yjcE 990282004251 yjcE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Na/H transport protein YP_005254702.1 4468793 D 990282 CDS YP_005254703.1 378991539 complement(4470534..4471421) 1 NC_016863.1 similar to Escherichia coli activator; hydrogen peroxide-inducible genes (AAC76943.1); LysR family; putative transcriptional regulator 4471421 990282004252 STMUK_4255 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254703.1 4470534 R 990282 CDS YP_005254704.1 378991540 4471525..4471935 1 NC_016863.1 putative inner membrane protein 4471935 990282004253 STMUK_4256 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254704.1 4471525 D 990282 CDS YP_005254705.1 378991541 4471928..4472617 1 NC_016863.1 similar to Escherichia coli putative seritonin transporter (AAC75203.1); putative inner membrane protein 4472617 990282004254 STMUK_4257 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254705.1 4471928 D 990282 CDS YP_005254706.1 378991542 complement(4472656..4474305) 1 NC_016863.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 4474305 actP 990282004255 actP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetate permease YP_005254706.1 4472656 R 990282 CDS YP_005254707.1 378991543 complement(4474302..4474616) 1 NC_016863.1 putative inner membrane protein 4474616 yjcH 990282004256 yjcH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254707.1 4474302 R 990282 CDS YP_005254708.1 378991544 complement(4474862..4476820) 1 NC_016863.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 4476820 acs 990282004257 acs Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 acetyl-CoA synthetase YP_005254708.1 4474862 R 990282 CDS YP_005254709.1 378991545 4477007..4477153 1 NC_016863.1 putative cytoplasmic protein 4477153 990282004258 STMUK_4261 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254709.1 4477007 D 990282 CDS YP_005254710.1 378991546 4477252..4478688 1 NC_016863.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 4478688 nrfA 990282004259 nrfA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome c552 YP_005254710.1 4477252 D 990282 CDS YP_005254711.1 378991547 4478713..4479366 1 NC_016863.1 part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit 4479366 nrfB 990282004260 nrfB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome c nitrite reductase pentaheme subunit YP_005254711.1 4478713 D 990282 CDS YP_005254712.1 378991548 4479363..4480034 1 NC_016863.1 similar to Escherichia coli formate-dependent nitrite reductase; FeS centers (AAC77042.1); putative formate-dependent nitrite reductase 4480034 nrfC 990282004261 nrfC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative formate-dependent nitrite reductase YP_005254712.1 4479363 D 990282 CDS YP_005254713.1 378991549 4480031..4480987 1 NC_016863.1 similar to Escherichia coli formate-dependent nitrate reductase complex; transmembrane protein (AAC77043.1); putative formate-dependent nitrate reductase 4480987 nrfD 990282004262 nrfD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative formate-dependent nitrate reductase YP_005254713.1 4480031 D 990282 CDS YP_005254714.1 378991550 4480980..4483202 1 NC_016863.1 similar to Escherichia coli formate-dependent nitrite reductase; possible assembly function (AAD13457.1); involved in attachment of haem c to cytochrome c552; formate-dependent nitrite reductase 4483202 nrfE 990282004263 nrfE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formate-dependent nitrite reductase YP_005254714.1 4480980 D 990282 CDS YP_005254715.1 378991551 4483199..4483819 1 NC_016863.1 similar to Escherichia coli protein of formate-dependent nitrite reductase complex (AAD13459.1); involved in attachment of haem c to cytochrome c552; formate-dependent nitrite reductase complex subunit NrfG 4483819 nrfG 990282004264 nrfG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 formate-dependent nitrite reductase complex subunit NrfG YP_005254715.1 4483199 D 990282 CDS YP_005254716.1 378991552 4484164..4485474 1 NC_016863.1 carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 4485474 gltP 990282004265 gltP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 glutamate/aspartate:proton symporter YP_005254716.1 4484164 D 990282 CDS YP_005254717.1 378991553 complement(4485632..4486321) 1 NC_016863.1 contains TPR repeats; hypothetical protein 4486321 yjcO 990282004266 yjcO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254717.1 4485632 R 990282 CDS YP_005254718.1 378991554 complement(4489000..4489908) 1 NC_016863.1 putative dioxygenase for lipid synthesis; LpxO (gi|9454389); putative dioxygenase 4489908 lpxO 990282004268 lpxO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dioxygenase YP_005254718.1 4489000 R 990282 CDS YP_005254719.1 378991555 complement(4490166..4490630) 1 NC_016863.1 PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate ca; aminoalkylphosphonic acid N-acetyltransferase 4490630 phnO 990282004269 phnO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aminoalkylphosphonic acid N-acetyltransferase YP_005254719.1 4490166 R 990282 CDS YP_005254720.1 378991556 complement(4490752..4491195) 1 NC_016863.1 hypothetical protein 4491195 phnB 990282004270 phnB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254720.1 4490752 R 990282 CDS YP_005254721.1 378991557 complement(4491315..4491650) 1 NC_016863.1 involved in phosphonate metabolism; hypothetical protein 4491650 phnA 990282004271 phnA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254721.1 4491315 R 990282 CDS YP_005254722.1 378991558 4492118..4493620 1 NC_016863.1 similar to Escherichia coli low-affinity transport system; proline permease II (AAC77072.1); MFS family; proline/glycine betaine transporter 4493620 proP 990282004272 proP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 proline/glycine betaine transporter YP_005254722.1 4492118 D 990282 CDS YP_005254723.1 378991559 complement(4493787..4494857) 1 NC_016863.1 sensor protein BasS/PmrB (SW:BASS_SALTY); in two-component regulatory system with BasR; sensor protein BasS/PmrB 4494857 basS 990282004273 basS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sensor protein BasS/PmrB YP_005254723.1 4493787 R 990282 CDS YP_005254724.1 378991560 complement(4494867..4495535) 1 NC_016863.1 response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR 4495535 basR 990282004274 basR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator BasR YP_005254724.1 4494867 R 990282 CDS YP_005254725.1 378991561 complement(4495532..4497175) 1 NC_016863.1 with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division; putative cell division protein 4497175 yjdB 990282004275 yjdB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cell division protein YP_005254725.1 4495532 R 990282 CDS YP_005254726.1 378991562 complement(4497309..4498646) 1 NC_016863.1 similar to Escherichia coli putative amino acid/amine transport protein; cryptic (AAC77076.1); APC family; arginine:agmatin antiporter 4498646 yjdE 990282004276 yjdE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 arginine:agmatin antiporter YP_005254726.1 4497309 R 990282 CDS YP_005254727.1 378991563 complement(4498786..4499547) 1 NC_016863.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC77077.1); AraC/XylS family; activates aidA; transcriptional activator 4499547 adiY 990282004277 adiY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional activator YP_005254727.1 4498786 R 990282 CDS YP_005254728.1 378991564 complement(4499845..4502115) 1 NC_016863.1 similar to Escherichia coli biodegradative arginine decarboxylase (AAC77078.1); inducible by acid; catabolic arginine decarboxylase 4502115 adi 990282004278 adi Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 catabolic arginine decarboxylase YP_005254728.1 4499845 R 990282 CDS YP_005254729.1 378991565 complement(4502345..4503277) 1 NC_016863.1 similar to Escherichia coli regulator of melibiose operon (AAC77079.1); AraC/XylS family; DNA-binding transcriptional regulator MelR 4503277 melR 990282004279 melR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional regulator MelR YP_005254729.1 4502345 R 990282 CDS YP_005254730.1 378991566 4503546..4504901 1 NC_016863.1 alpha-galactosidase (SW:AGAL_SALTY); alpha-galactosidase 4504901 melA 990282004280 melA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alpha-galactosidase YP_005254730.1 4503546 D 990282 CDS YP_005254731.1 378991567 4504985..4506415 1 NC_016863.1 melibiose carrier protein; thiomethylgalactoside permease; melibiose permease; Na+/Li+ melibiose symporter; melibiosetransporter (SW:MELB_SALTY); GPH family; melibiose:sodium symporter 4506415 melB 990282004281 melB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 melibiose:sodium symporter YP_005254731.1 4504985 D 990282 CDS YP_005254732.1 378991568 complement(4506513..4508159) 1 NC_016863.1 similar to Escherichia coli fumarase B; fumarate hydratase class I anaerobic isozyme (AAC77083.1); fumarase B 4508159 fumB 990282004282 fumB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fumarase B YP_005254732.1 4506513 R 990282 CDS YP_005254733.1 378991569 complement(4508255..4509595) 1 NC_016863.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 4509595 dcuB 990282004283 dcuB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anaerobic C4-dicarboxylate transporter YP_005254733.1 4508255 R 990282 CDS YP_005254734.1 378991570 complement(4509742..4510008) 1 NC_016863.1 putative cytoplasmic protein 4510008 990282004284 STMUK_4287 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254734.1 4509742 R 990282 CDS YP_005254735.1 378991571 complement(4510325..4511044) 1 NC_016863.1 response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DNA-binding transcriptional activator DcuR 4511044 dcuR 990282004285 dcuR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator DcuR YP_005254735.1 4510325 R 990282 CDS YP_005254736.1 378991572 complement(4511041..4512672) 1 NC_016863.1 C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS 4512672 dcuS 990282004286 dcuS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sensory histidine kinase DcuS YP_005254736.1 4511041 R 990282 CDS YP_005254737.1 378991573 4513106..4515457 1 NC_016863.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit A (AAC73980.1); putative anaerobic dimethylsulfoxide reductase subunit A 4515457 990282004287 STMUK_4290 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative anaerobic dimethylsulfoxide reductase subunit A YP_005254737.1 4513106 D 990282 CDS YP_005254738.1 378991574 4515471..4516097 1 NC_016863.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); putative anaerobic dimethylsulfoxide reductase subunit B 4516097 990282004288 STMUK_4291 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative anaerobic dimethylsulfoxide reductase subunit B YP_005254738.1 4515471 D 990282 CDS YP_005254739.1 378991575 4516090..4516863 1 NC_016863.1 similar to Escherichia coli putative DMSO reductase anchor subunit (AAC74662.1); putative anaerobic dimethylsulfoxide reductase subunit C 4516863 990282004289 STMUK_4292 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative anaerobic dimethylsulfoxide reductase subunit C YP_005254739.1 4516090 D 990282 CDS YP_005254740.1 378991576 4516879..4517532 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase component (AAC74663.1); putative anaerobic dehydrogenase component 4517532 990282004290 STMUK_4293 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative anaerobic dehydrogenase component YP_005254740.1 4516879 D 990282 CDS YP_005254741.1 378991577 complement(4517616..4519016) 1 NC_016863.1 hypothetical protein 4519016 990282004291 STMUK_4294 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254741.1 4517616 R 990282 CDS YP_005254742.1 378991578 4519320..4520225 1 NC_016863.1 putative inner membrane protein 4520225 990282004292 STMUK_4295 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254742.1 4519320 D 990282 CDS YP_005254743.1 378991579 complement(4520519..4520788) 1 NC_016863.1 hypothetical protein 4520788 990282004293 STMUK_4296 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254743.1 4520519 R 990282 CDS YP_005254744.1 378991580 complement(4520796..4521011) 1 NC_016863.1 putative cytoplasmic protein 4521011 990282004294 STMUK_4297 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254744.1 4520796 R 990282 CDS YP_005254745.1 378991581 complement(4521034..4521321) 1 NC_016863.1 LuxR family; putative regulatory protein 4521321 990282004295 STMUK_4298 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005254745.1 4521034 R 990282 CDS YP_005254746.1 378991582 complement(4521318..4522193) 1 NC_016863.1 HilD (gi|4455108); AraC-type; contains putative DNA-binding domain; putative DNA-binding protein 4522193 990282004296 STMUK_4299 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA-binding protein YP_005254746.1 4521318 R 990282 CDS YP_005254747.1 378991583 complement(4522458..4522679) 1 NC_016863.1 putative cytoplasmic protein 4522679 990282004297 STMUK_4300 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254747.1 4522458 R 990282 CDS YP_005254748.1 378991584 4522996..4523289 1 NC_016863.1 CopG family; putative helix-turn-helix protein; hypothetical protein 4523289 990282004298 STMUK_4301 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254748.1 4522996 D 990282 CDS YP_005254749.1 378991585 4523286..4523777 1 NC_016863.1 putative acetyltransferase 4523777 990282004299 STMUK_4302 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acetyltransferase YP_005254749.1 4523286 D 990282 CDS YP_005254750.1 378991586 complement(4524025..4524777) 1 NC_016863.1 nonspecific acid phosphatase precursor (SW:PHON_SALTY); non-specific acid phosphatase 4524777 phoN 990282004300 phoN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 non-specific acid phosphatase YP_005254750.1 4524025 R 990282 CDS YP_005254751.1 378991587 complement(4525987..4526364) 1 NC_016863.1 similar to hypothetical protein SARI_03325 (Pid: YP_001572299.1).; hypothetical protein 4526364 990282004301 STMUK_4304 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254751.1 4525987 R 990282 CDS YP_005254752.1 378991588 4526436..4526768 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator (AAC73589.1); MerR family; putative regulatory protein 4526768 990282004302 STMUK_4305 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005254752.1 4526436 D 990282 CDS YP_005254753.1 378991589 complement(4527207..4527782) 1 NC_016863.1 putative transcriptional regulator 4527782 yjdC 990282004304 yjdC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254753.1 4527207 R 990282 CDS YP_005254754.1 378991590 complement(4527819..4529522) 1 NC_016863.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bon; thiol:disulfide interchange protein 4529522 dipZ 990282004305 dipZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thiol:disulfide interchange protein YP_005254754.1 4527819 R 990282 CDS YP_005254755.1 378991591 complement(4529498..4529845) 1 NC_016863.1 copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA 4529845 cutA 990282004306 cutA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 divalent-cation tolerance protein CutA YP_005254755.1 4529498 R 990282 CDS YP_005254756.1 378991592 complement(4529966..4531267) 1 NC_016863.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 4531267 dcuA 990282004307 dcuA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anaerobic C4-dicarboxylate transporter YP_005254756.1 4529966 R 990282 CDS YP_005254757.1 378991593 complement(4531382..4532818) 1 NC_016863.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 4532818 aspA 990282004308 aspA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aspartate ammonia-lyase YP_005254757.1 4531382 R 990282 CDS YP_005254758.1 378991594 4533120..4533635 1 NC_016863.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 4533635 fxsA 990282004309 fxsA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 FxsA protein YP_005254758.1 4533120 D 990282 CDS YP_005254759.1 378991595 complement(4533694..4534935) 1 NC_016863.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH 4534935 yjeH 990282004310 yjeH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 inner membrane protein YjeH YP_005254759.1 4533694 R 990282 CDS YP_005254760.1 378991596 4535211..4535504 1 NC_016863.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; re; co-chaperonin GroES 4535504 groES 990282004311 groES Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 co-chaperonin GroES YP_005254760.1 4535211 D 990282 CDS YP_005254761.1 378991597 4535548..4537194 1 NC_016863.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they ar; chaperonin GroEL 4537194 groEL 990282004312 groEL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chaperonin GroEL YP_005254761.1 4535548 D 990282 CDS YP_005254762.1 378991598 4537420..4537791 1 NC_016863.1 putative outer membrane lipoprotein 4537791 yjeI 990282004313 yjeI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane lipoprotein YP_005254762.1 4537420 D 990282 CDS YP_005254763.1 378991599 complement(4537839..4538696) 1 NC_016863.1 putative inner membrane protein 4538696 yjeJ 990282004314 yjeJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254763.1 4537839 R 990282 CDS YP_005254764.1 378991600 complement(4538978..4540006) 1 NC_016863.1 putative aminomutase 4540006 yjeK 990282004315 yjeK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative aminomutase YP_005254764.1 4538978 R 990282 CDS YP_005254765.1 378991601 4540047..4540613 1 NC_016863.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4540613 efp 990282004316 efp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 elongation factor P YP_005254765.1 4540047 D 990282 CDS YP_005254766.1 378991602 4540632..4540808 1 NC_016863.1 putative entericidin A precursor 4540808 ecnA 990282004317 ecnA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative entericidin A precursor YP_005254766.1 4540632 D 990282 CDS YP_005254767.1 378991603 4540916..4541062 1 NC_016863.1 entericidin B membrane lipoprotein 4541062 ecnB 990282004318 ecnB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 entericidin B membrane lipoprotein YP_005254767.1 4540916 D 990282 CDS YP_005254768.1 378991604 complement(4541093..4541680) 1 NC_016863.1 LuxR family; putative regulatory protein 4541680 ecnR 990282004319 ecnR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative regulatory protein YP_005254768.1 4541093 R 990282 CDS YP_005254769.1 378991605 4541937..4542254 1 NC_016863.1 member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations; quaternary ammonium compound-resistance protein SugE 4542254 sugE 990282004320 sugE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 quaternary ammonium compound-resistance protein SugE YP_005254769.1 4541937 D 990282 CDS YP_005254770.1 378991606 complement(4542271..4542804) 1 NC_016863.1 lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 4542804 blc 990282004321 blc Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane lipoprotein Blc YP_005254770.1 4542271 R 990282 CDS YP_005254771.1 378991607 complement(4542916..4543275) 1 NC_016863.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 4543275 frdD 990282004322 frdD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fumarate reductase subunit D YP_005254771.1 4542916 R 990282 CDS YP_005254772.1 378991608 complement(4543286..4543681) 1 NC_016863.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respecti; fumarate reductase subunit C 4543681 frdC 990282004323 frdC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fumarate reductase subunit C YP_005254772.1 4543286 R 990282 CDS YP_005254773.1 378991609 complement(4543692..4544426) 1 NC_016863.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respecti; fumarate reductase iron-sulfur subunit 4544426 frdB 990282004324 frdB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fumarate reductase iron-sulfur subunit YP_005254773.1 4543692 R 990282 CDS YP_005254774.1 378991610 complement(4544419..4546209) 1 NC_016863.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respecti; fumarate reductase flavoprotein subunit 4546209 frdA 990282004325 frdA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fumarate reductase flavoprotein subunit YP_005254774.1 4544419 R 990282 CDS YP_005254775.1 378991611 4546532..4547509 1 NC_016863.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRN; lysyl-tRNA synthetase 4547509 yjeA 990282004326 yjeA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lysyl-tRNA synthetase YP_005254775.1 4546532 D 990282 CDS YP_005254776.1 378991612 4547735..4549237 1 NC_016863.1 hypothetical protein in poxA-psd intergenic region (SW:YJEM_SALTY); APC family; putative amino-acid transport protein 4549237 yjeM 990282004327 yjeM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative amino-acid transport protein YP_005254776.1 4547735 D 990282 CDS YP_005254777.1 378991613 4549289..4549603 1 NC_016863.1 putative inner membrane protein 4549603 yjeO 990282004328 yjeO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254777.1 4549289 D 990282 CDS YP_005254778.1 378991614 complement(4549670..4552996) 1 NC_016863.1 similar to Escherichia coli putative periplasmic binding protein (AAC77119.1); hypothetical protein 4552996 yjeP 990282004329 yjeP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254778.1 4549670 R 990282 CDS YP_005254779.1 378991615 complement(4553015..4553983) 1 NC_016863.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4553983 psd 990282004330 psd Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphatidylserine decarboxylase YP_005254779.1 4553015 R 990282 CDS YP_005254780.1 378991616 complement(4554075..4555151) 1 NC_016863.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 4555151 yjeQ 990282004331 yjeQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribosome-associated GTPase YP_005254780.1 4554075 R 990282 CDS YP_005254781.1 378991617 4555234..4555779 1 NC_016863.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4555779 orn 990282004332 orn Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 oligoribonuclease YP_005254781.1 4555234 D 990282 CDS YP_005254782.1 378991618 complement(4555841..4556581) 1 NC_016863.1 similar to Escherichia coli arginine 3rd transport system periplasmic binding protein (AAC73947.1); putative arginine-binding periplasmic protein 4556581 990282004333 STMUK_4336 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative arginine-binding periplasmic protein YP_005254782.1 4555841 R 990282 CDS YP_005254783.1 378991619 complement(4557666..4558820) 1 NC_016863.1 putative FeS protein 4558820 yjeS 990282004337 yjeS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative FeS protein YP_005254783.1 4557666 R 990282 CDS YP_005254784.1 378991620 4558804..4560351 1 NC_016863.1 hypothetical protein 4560351 yjeF 990282004338 yjeF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254784.1 4558804 D 990282 CDS YP_005254785.1 378991621 4560323..4560784 1 NC_016863.1 possibly involved in cell wall synthesis; putative ATPase 4560784 yjeE 990282004339 yjeE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ATPase YP_005254785.1 4560323 D 990282 CDS YP_005254786.1 378991622 4560801..4562120 1 NC_016863.1 N-acetylmuramoyl-L-alanine amidase AMIB (SW:AMIB_SALTY); a murein hydrolase; N-acetylmuramoyl-l-alanine amidase II 4562120 amiB 990282004340 amiB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 N-acetylmuramoyl-l-alanine amidase II YP_005254786.1 4560801 D 990282 CDS YP_005254787.1 378991623 4562130..4563986 1 NC_016863.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itsel; DNA mismatch repair protein 4563986 mutL 990282004341 mutL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA mismatch repair protein YP_005254787.1 4562130 D 990282 CDS YP_005254788.1 378991624 4563979..4564929 1 NC_016863.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA s; tRNA delta(2)-isopentenylpyrophosphate transferase 4564929 miaA 990282004342 miaA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tRNA delta(2)-isopentenylpyrophosphate transferase YP_005254788.1 4563979 D 990282 CDS YP_005254789.1 378991625 4565012..4565320 1 NC_016863.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4565320 hfq 990282004343 hfq Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 RNA-binding protein Hfq YP_005254789.1 4565012 D 990282 CDS YP_005254790.1 378991626 4565392..4566672 1 NC_016863.1 involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; putative GTPase HflX 4566672 hflX 990282004344 hflX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative GTPase HflX YP_005254790.1 4565392 D 990282 CDS YP_005254791.1 378991627 4566887..4568146 1 NC_016863.1 with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4568146 hflK 990282004345 hflK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 FtsH protease regulator HflK YP_005254791.1 4566887 D 990282 CDS YP_005254792.1 378991628 4568149..4569153 1 NC_016863.1 with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4569153 hflC 990282004346 hflC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 FtsH protease regulator HflC YP_005254792.1 4568149 D 990282 CDS YP_005254793.1 378991629 4569232..4569429 1 NC_016863.1 putative inner membrane protein 4569429 yjeT 990282004347 yjeT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254793.1 4569232 D 990282 CDS YP_005254794.1 378991630 4569532..4570830 1 NC_016863.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 4570830 purA 990282004348 purA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 adenylosuccinate synthetase YP_005254794.1 4569532 D 990282 CDS YP_005254795.1 378991631 4571037..4571462 1 NC_016863.1 negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 4571462 yjeB 990282004349 yjeB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional repressor NsrR YP_005254795.1 4571037 D 990282 CDS YP_005254796.1 378991632 4571500..4573938 1 NC_016863.1 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; exoribonuclease R 4573938 vacB 990282004350 vacB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 exoribonuclease R YP_005254796.1 4571500 D 990282 CDS YP_005254797.1 378991633 4574029..4574760 1 NC_016863.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4574760 yjfH 990282004351 yjfH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 23S rRNA (guanosine-2'-O-)-methyltransferase YP_005254797.1 4574029 D 990282 CDS YP_005254798.1 378991634 4574892..4575296 1 NC_016863.1 putative cytoplasmic protein 4575296 yjfI 990282004352 yjfI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254798.1 4574892 D 990282 CDS YP_005254799.1 378991635 4575311..4576009 1 NC_016863.1 similar to Escherichia coli putative alpha helical protein (AAC77139.1); IM30; suppresses sigma54-dependent transcription; putative phage shock protein A 4576009 yjfJ 990282004353 yjfJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phage shock protein A YP_005254799.1 4575311 D 990282 CDS YP_005254800.1 378991636 4576009..4577079 1 NC_016863.1 similar to eukaryotic potassium channels; putative potassium channel 4577079 990282004354 STMUK_4357 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative potassium channel YP_005254800.1 4576009 D 990282 CDS YP_005254801.1 378991637 4577052..4577735 1 NC_016863.1 putative cytoplasmic protein 4577735 yjfK 990282004355 yjfK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254801.1 4577052 D 990282 CDS YP_005254802.1 378991638 4577753..4578151 1 NC_016863.1 putative inner membrane protein 4578151 yjfL 990282004356 yjfL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254802.1 4577753 D 990282 CDS YP_005254803.1 378991639 4578161..4578799 1 NC_016863.1 putative inner membrane protein 4578799 yjfM 990282004357 yjfM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254803.1 4578161 D 990282 CDS YP_005254804.1 378991640 4578802..4579965 1 NC_016863.1 similar to Escherichia coli putative synthetase/amidase (AAC77143.1); putative glutathionylspermidine synthase 4579965 yjfC 990282004358 yjfC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glutathionylspermidine synthase YP_005254804.1 4578802 D 990282 CDS YP_005254805.1 378991641 4580050..4581672 1 NC_016863.1 catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; isovaleryl CoA dehydrogenase 4581672 aidB 990282004359 aidB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 isovaleryl CoA dehydrogenase YP_005254805.1 4580050 D 990282 CDS YP_005254806.1 378991642 complement(4581717..4582037) 1 NC_016863.1 putative inner membrane protein 4582037 yjfN 990282004360 yjfN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254806.1 4581717 R 990282 CDS YP_005254807.1 378991643 complement(4582123..4582452) 1 NC_016863.1 in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility; putative biofilm stress and motility protein A 4582452 yjfO 990282004361 yjfO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative biofilm stress and motility protein A YP_005254807.1 4582123 R 990282 CDS YP_005254808.1 378991644 4582636..4583385 1 NC_016863.1 YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase 4583385 yjfP 990282004362 yjfP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 esterase YP_005254808.1 4582636 D 990282 CDS YP_005254809.1 378991645 complement(4583382..4584137) 1 NC_016863.1 negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR 4584137 yjfQ 990282004363 yjfQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional repressor UlaR YP_005254809.1 4583382 R 990282 CDS YP_005254810.1 378991646 complement(4584242..4585306) 1 NC_016863.1 contains beta-lactamase fold; putative L-ascorbate 6-phosphate lactonase 4585306 yjfR 990282004364 yjfR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative L-ascorbate 6-phosphate lactonase YP_005254810.1 4584242 R 990282 CDS YP_005254811.1 378991647 4585636..4587066 1 NC_016863.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4587066 sgaT 990282004365 sgaT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system ascorbate-specific transporter subunit IIC YP_005254811.1 4585636 D 990282 CDS YP_005254812.1 378991648 4587082..4587387 1 NC_016863.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIB 4587387 sgaB 990282004366 sgaB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system L-ascorbate-specific transporter subunit IIB YP_005254812.1 4587082 D 990282 CDS YP_005254813.1 378991649 4587397..4587861 1 NC_016863.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIA 4587861 ptxA 990282004367 ptxA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 PTS system L-ascorbate-specific transporter subunit IIA YP_005254813.1 4587397 D 990282 CDS YP_005254814.1 378991650 4587875..4588525 1 NC_016863.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4588525 ulaD 990282004368 ulaD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 3-keto-L-gulonate-6-phosphate decarboxylase YP_005254814.1 4587875 D 990282 CDS YP_005254815.1 378991651 4588535..4589389 1 NC_016863.1 UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase 4589389 sgaU 990282004369 sgaU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-xylulose 5-phosphate 3-epimerase YP_005254815.1 4588535 D 990282 CDS YP_005254816.1 378991652 4589389..4590075 1 NC_016863.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4590075 ulaF 990282004370 ulaF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-ribulose-5-phosphate 4-epimerase YP_005254816.1 4589389 D 990282 CDS YP_005254817.1 378991653 complement(4590204..4590479) 1 NC_016863.1 putative outer membrane protein 4590479 yjfY 990282004371 yjfY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005254817.1 4590204 R 990282 CDS YP_005254818.1 378991654 4590673..4590879 1 NC_016863.1 putative cytoplasmic protein 4590879 990282004372 STMUK_4375 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254818.1 4590673 D 990282 CDS YP_005254819.1 378991655 4590950..4591345 1 NC_016863.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 4591345 rpsF 990282004373 rpsF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S6 YP_005254819.1 4590950 D 990282 CDS YP_005254820.1 378991656 4591352..4591666 1 NC_016863.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4591666 priB 990282004374 priB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 primosomal replication protein N YP_005254820.1 4591352 D 990282 CDS YP_005254821.1 378991657 4591671..4591898 1 NC_016863.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4591898 rpsR 990282004375 rpsR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 30S ribosomal protein S18 YP_005254821.1 4591671 D 990282 CDS YP_005254822.1 378991658 4591940..4592389 1 NC_016863.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4592389 rplI 990282004376 rplI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 50S ribosomal protein L9 YP_005254822.1 4591940 D 990282 CDS YP_005254823.1 378991659 4592537..4593463 1 NC_016863.1 putative permease 4593463 yifZ 990282004377 yifZ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005254823.1 4592537 D 990282 CDS YP_005254824.1 378991660 complement(4593513..4594148) 1 NC_016863.1 putative cell envelope opacity-associated protein A 4594148 ytfB 990282004378 ytfB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cell envelope opacity-associated protein A YP_005254824.1 4593513 R 990282 CDS YP_005254825.1 378991661 4594326..4594988 1 NC_016863.1 FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4594988 fklB 990282004379 fklB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptidyl-prolyl cis-trans isomerase YP_005254825.1 4594326 D 990282 CDS YP_005254826.1 378991662 4595284..4596693 1 NC_016863.1 involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 4596693 cycA 990282004380 cycA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-alanine/D-serine/glycine permease YP_005254826.1 4595284 D 990282 CDS YP_005254827.1 378991663 complement(4596805..4597467) 1 NC_016863.1 Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair di-iron protein 4597467 ytfE 990282004381 ytfE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 iron-sulfur cluster repair di-iron protein YP_005254827.1 4596805 R 990282 CDS YP_005254828.1 378991664 complement(4597570..4598535) 1 NC_016863.1 similar to Escherichia coli putative transmembrane subunit (AAC77167.1); putative cationic amino acid transporter 4598535 ytfF 990282004382 ytfF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cationic amino acid transporter YP_005254828.1 4597570 R 990282 CDS YP_005254829.1 378991665 complement(4598616..4599464) 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC77168.1); putative reductase 4599464 ytfG 990282004383 ytfG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative reductase YP_005254829.1 4598616 R 990282 CDS YP_005254830.1 378991666 4599552..4599938 1 NC_016863.1 putative transcriptional regulator 4599938 ytfH 990282004384 ytfH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254830.1 4599552 D 990282 CDS YP_005254831.1 378991667 complement(4599996..4601939) 1 NC_016863.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein 4601939 cpdB 990282004385 cpdB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein YP_005254831.1 4599996 R 990282 CDS YP_005254832.1 378991668 4602207..4602947 1 NC_016863.1 catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; adenosine-3'(2'),5'-bisphosphate nucleotidase 4602947 cysQ 990282004386 cysQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 adenosine-3'(2'),5'-bisphosphate nucleotidase YP_005254832.1 4602207 D 990282 CDS YP_005254833.1 378991669 complement(4602937..4603494) 1 NC_016863.1 putative transcriptional regulator 4603494 ytfJ 990282004387 ytfJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254833.1 4602937 R 990282 CDS YP_005254834.1 378991670 4603755..4604027 1 NC_016863.1 putative cytoplasmic protein 4604027 ytfK 990282004388 ytfK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254834.1 4603755 D 990282 CDS YP_005254835.1 378991671 complement(4604112..4605455) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC77175.1); putative hemolysin-like protein 4605455 ytfL 990282004389 ytfL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative hemolysin-like protein YP_005254835.1 4604112 R 990282 CDS YP_005254836.1 378991672 complement(4605638..4606276) 1 NC_016863.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 4606276 msrA 990282004390 msrA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 methionine sulfoxide reductase A YP_005254836.1 4605638 R 990282 CDS YP_005254837.1 378991673 4606489..4608222 1 NC_016863.1 putative outer membrane protein 4608222 ytfM 990282004391 ytfM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005254837.1 4606489 D 990282 CDS YP_005254838.1 378991674 4608219..4611998 1 NC_016863.1 hypothetical protein 4611998 ytfN 990282004392 ytfN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254838.1 4608219 D 990282 CDS YP_005254839.1 378991675 4612001..4612345 1 NC_016863.1 putative cytoplasmic protein 4612345 ytfP 990282004393 ytfP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254839.1 4612001 D 990282 CDS YP_005254840.1 378991676 complement(4612399..4613607) 1 NC_016863.1 similar to Escherichia coli D-galactonate transport (AAC76714.1); putative permease 4613607 990282004394 STMUK_4397 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005254840.1 4612399 R 990282 CDS YP_005254841.1 378991677 complement(4613604..4614767) 1 NC_016863.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; putative metallo-dependent hydrolase 4614767 990282004395 STMUK_4398 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative metallo-dependent hydrolase YP_005254841.1 4613604 R 990282 CDS YP_005254842.1 378991678 complement(4615177..4615707) 1 NC_016863.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 4615707 ppa 990282004396 ppa Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 inorganic pyrophosphatase YP_005254842.1 4615177 R 990282 CDS YP_005254843.1 378991679 complement(4615934..4616932) 1 NC_016863.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 4616932 fbp 990282004397 fbp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 fructose-1,6-bisphosphatase YP_005254843.1 4615934 R 990282 CDS YP_005254844.1 378991680 4617107..4618486 1 NC_016863.1 similar to Escherichia coli putative ligase (AAC77190.1); UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4618486 mpl 990282004398 mpl Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_005254844.1 4617107 D 990282 CDS YP_005254845.1 378991681 complement(4618483..4618797) 1 NC_016863.1 similar to hypothetical protein SeAg_B4697 (Pid: YP_002149332.1).; hypothetical protein 4618797 990282004399 STMUK_4402 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254845.1 4618483 R 990282 CDS YP_005254846.1 378991682 4618977..4619810 1 NC_016863.1 putative transcriptional regulator 4619810 990282004400 STMUK_4403 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254846.1 4618977 D 990282 CDS YP_005254847.1 378991683 complement(4619861..4621294) 1 NC_016863.1 similar to Escherichia coli xylose-proton symport (AAC77001.1); sugar transporter 4621294 990282004401 STMUK_4404 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sugar transporter YP_005254847.1 4619861 R 990282 CDS YP_005254848.1 378991684 complement(4621537..4621716) 1 NC_016863.1 similar to hypothetical protein SPAB_05563 (Pid: YP_001591665.1).; hypothetical protein 4621716 990282004402 STMUK_4405 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254848.1 4621537 R 990282 CDS YP_005254849.1 378991685 4621753..4623189 1 NC_016863.1 similar to Escherichia coli xylose-proton symport (AAC77001.1); sugar transporter 4623189 990282004403 STMUK_4406 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sugar transporter YP_005254849.1 4621753 D 990282 CDS YP_005254850.1 378991686 complement(4623542..4624351) 1 NC_016863.1 putative inner membrane protein 4624351 990282004404 STMUK_4407 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254850.1 4623542 R 990282 CDS YP_005254851.1 378991687 complement(4624376..4625881) 1 NC_016863.1 similar to Escherichia coli phenylacetaldehyde dehydrogenase (AAC74467.1); putative NAD-dependent aldehyde dehydrogenase 4625881 990282004405 STMUK_4408 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative NAD-dependent aldehyde dehydrogenase YP_005254851.1 4624376 R 990282 CDS YP_005254852.1 378991688 4626321..4627145 1 NC_016863.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC74766.1); contains putative DNA-binding domain; putative DNA-binding protein 4627145 990282004406 STMUK_4409 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA-binding protein YP_005254852.1 4626321 D 990282 CDS YP_005254853.1 378991689 4627405..4628325 1 NC_016863.1 putative endonuclease 4628325 990282004407 STMUK_4410 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative endonuclease YP_005254853.1 4627405 D 990282 CDS YP_005254854.1 378991690 4628344..4629354 1 NC_016863.1 similar to Escherichia coli putative dehydrogenase (AAC77236.1); putative dehydrogenase 4629354 990282004408 STMUK_4411 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dehydrogenase YP_005254854.1 4628344 D 990282 CDS YP_005254855.1 378991691 4629451..4630794 1 NC_016863.1 SrfJ (gi|8347262); activated by transcription factor SsrB; similar to Homo sapiens lysosomal glucosyl ceramidase; lysosomal glucosyl ceramidase-like protein 4630794 srfJ 990282004409 srfJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lysosomal glucosyl ceramidase-like protein YP_005254855.1 4629451 D 990282 CDS YP_005254856.1 378991692 4630795..4631628 1 NC_016863.1 putative endonuclease 4631628 990282004410 STMUK_4413 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative endonuclease YP_005254856.1 4630795 D 990282 CDS YP_005254857.1 378991693 complement(4631625..4632791) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC75382.1); major facilitator superfamily transporter 4632791 990282004411 STMUK_4414 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 major facilitator superfamily transporter YP_005254857.1 4631625 R 990282 CDS YP_005254858.1 378991694 complement(4632852..4634783) 1 NC_016863.1 ribokinase family; putative sugar kinase 4634783 990282004412 STMUK_4415 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar kinase YP_005254858.1 4632852 R 990282 CDS YP_005254859.1 378991695 4635206..4637146 1 NC_016863.1 similar to E. coli acetolactate synthase I,valine-sensitive, large subunit (AAC76694.1); Blastp hitto AAC76694.1 (562 aa); putative thiamine pyrophosphate-requiringenzyme 4637146 990282004413 STMUK_4416 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative thiamine pyrophosphate-requiringenzyme YP_005254859.1 4635206 D 990282 CDS YP_005254860.1 378991696 4637327..4638349 1 NC_016863.1 similar to Escherichia coli putative virulence factor (AAC74152.1); oxidoreductase family; putative thiamine pyrophosphate-requiring enzyme; myo-inositol 2-dehydrogenase 4638349 990282004414 STMUK_4418 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 myo-inositol 2-dehydrogenase YP_005254860.1 4637327 D 990282 CDS YP_005254861.1 378991697 4638422..4639648 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC77235.1); putative permease 4639648 990282004415 STMUK_4419 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005254861.1 4638422 D 990282 CDS YP_005254862.1 378991698 4639809..4640624 1 NC_016863.1 putative cytoplasmic protein 4640624 990282004416 STMUK_4420 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254862.1 4639809 D 990282 CDS YP_005254863.1 378991699 4640677..4641561 1 NC_016863.1 putative endonuclease 4641561 990282004417 STMUK_4421 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative endonuclease YP_005254863.1 4640677 D 990282 CDS YP_005254864.1 378991700 complement(4641617..4642168) 1 NC_016863.1 similar to Escherichia coli putative alpha helix protein (AAC77191.1); hypothetical protein 4642168 yjgA 990282004418 yjgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254864.1 4641617 R 990282 CDS YP_005254865.1 378991701 4642264..4643616 1 NC_016863.1 protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 4643616 tldE 990282004419 tldE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptidase PmbA YP_005254865.1 4642264 D 990282 CDS YP_005254866.1 378991702 4643715..4644101 1 NC_016863.1 similar to Escherichia coli cytochrome b562 (AAC77193.1); cytochrome b562 4644101 cybC 990282004420 cybC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 cytochrome b562 YP_005254866.1 4643715 D 990282 CDS YP_005254867.1 378991703 4644379..4644717 1 NC_016863.1 nitrogen regulation protein NR(ii) (SW:NTRB_SALTY); putative cytoplasmic protein 4644717 990282004421 STMUK_4425 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254867.1 4644379 D 990282 CDS YP_005254868.1 378991704 4644728..4645090 1 NC_016863.1 putative cytoplasmic protein 4645090 990282004422 STMUK_4426 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254868.1 4644728 D 990282 CDS YP_005254869.1 378991705 4645090..4645392 1 NC_016863.1 putative cytoplasmic protein 4645392 990282004423 STMUK_4427 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254869.1 4645090 D 990282 CDS YP_005254870.1 378991706 4645415..4646191 1 NC_016863.1 putative inner membrane protein 4646191 990282004424 STMUK_4428 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254870.1 4645415 D 990282 CDS YP_005254871.1 378991707 4646203..4646847 1 NC_016863.1 putative inner membrane protein 4646847 990282004425 STMUK_4429 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254871.1 4646203 D 990282 CDS YP_005254872.1 378991708 4646906..4648039 1 NC_016863.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4648039 990282004426 STMUK_4430 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 dihydroorotase YP_005254872.1 4646906 D 990282 CDS YP_005254873.1 378991709 4648023..4649141 1 NC_016863.1 L-seryl-tRNA selenium transferase; putative selenocysteine synthase 4649141 990282004427 STMUK_4431 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative selenocysteine synthase YP_005254873.1 4648023 D 990282 CDS YP_005254874.1 378991710 4649138..4649878 1 NC_016863.1 hypothetical protein 4649878 990282004428 STMUK_4432 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254874.1 4649138 D 990282 CDS YP_005254875.1 378991711 4649895..4651808 1 NC_016863.1 Ntr-type; phosphotransferase system mannitol/fructose-specific IIA component 4651808 990282004429 STMUK_4433 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphotransferase system mannitol/fructose-specific IIA component YP_005254875.1 4649895 D 990282 CDS YP_005254876.1 378991712 4651886..4652128 1 NC_016863.1 Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 4652128 990282004430 STMUK_4434 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 bifunctional antitoxin/transcriptional repressor RelB YP_005254876.1 4651886 D 990282 CDS YP_005254877.1 378991713 4652118..4652402 1 NC_016863.1 putative inner membrane protein 4652402 990282004431 STMUK_4435 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254877.1 4652118 D 990282 CDS YP_005254878.1 378991714 complement(4652406..4652870) 1 NC_016863.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 4652870 nrdG 990282004432 nrdG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anaerobic ribonucleotide reductase-activating protein YP_005254878.1 4652406 R 990282 CDS YP_005254879.1 378991715 complement(4652991..4655129) 1 NC_016863.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 4655129 nrdD 990282004433 nrdD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 anaerobic ribonucleoside triphosphate reductase YP_005254879.1 4652991 R 990282 CDS YP_005254880.1 378991716 complement(4655538..4657190) 1 NC_016863.1 similar to Escherichia coli trehalase 6-P hydrolase (AAC77196.1); alternative inducer of maltose system; cytoplasmic; trehalose-6-phosphate hydrolase 4657190 treC 990282004434 treC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 trehalose-6-phosphate hydrolase YP_005254880.1 4655538 R 990282 CDS YP_005254881.1 378991717 complement(4658795..4659742) 1 NC_016863.1 regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor 4659742 treR 990282004436 treR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 trehalose repressor YP_005254881.1 4658795 R 990282 CDS YP_005254882.1 378991718 4660126..4662834 1 NC_016863.1 P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 4662834 mgtA 990282004437 mgtA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 magnesium-transporting ATPase MgtA YP_005254882.1 4660126 D 990282 CDS YP_005254883.1 378991719 complement(4662950..4663396) 1 NC_016863.1 putative transposase 4663396 990282004438 STMUK_4443 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transposase YP_005254883.1 4662950 R 990282 CDS YP_005254884.1 378991720 complement(4663471..4663857) 1 NC_016863.1 putative translation initiation inhibitor 4663857 yjgF 990282004439 yjgF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative translation initiation inhibitor YP_005254884.1 4663471 R 990282 CDS YP_005254885.1 378991721 complement(4663934..4664395) 1 NC_016863.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit 4664395 pyrI 990282004440 pyrI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aspartate carbamoyltransferase regulatory subunit YP_005254885.1 4663934 R 990282 CDS YP_005254886.1 378991722 complement(4664408..4665343) 1 NC_016863.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 4665343 pyrB 990282004441 pyrB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 aspartate carbamoyltransferase catalytic subunit YP_005254886.1 4664408 R 990282 CDS YP_005254887.1 378991723 complement(4665379..4665480) 1 NC_016863.1 pyrBI operon leader peptide (attenuator) (SW:LPPY_SALTY); contains a frameshift and premature stop as compared to Escherichia coli pyrBI operon leader peptide; pyrBI operon leader peptide 4665480 pyrL 990282004442 pyrL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyrBI operon leader peptide YP_005254887.1 4665379 R 990282 CDS YP_005254888.1 378991724 4665460..4665600 1 NC_016863.1 similar to E. coli orf, hypothetical protein(AAC77204.1); Blastp hit to AAC77204.1 (110 aa); putative cytoplasmic protein 4665600 990282004443 STMUK_4448 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254888.1 4665460 D 990282 CDS YP_005254889.1 378991725 complement(4665570..4666058) 1 NC_016863.1 similar to Escherichia coli repressor of arg regulon; cer-mediated site specific recombination (AAC76269.1); putative arginine repressor 4666058 990282004444 STMUK_4449 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative arginine repressor YP_005254889.1 4665570 R 990282 CDS YP_005254890.1 378991726 complement(4666245..4667648) 1 NC_016863.1 similar to Escherichia coli putative S-transferase (AAC75358.1); putative arginine repressor 4667648 990282004445 STMUK_4450 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative arginine repressor YP_005254890.1 4666245 R 990282 CDS YP_005254891.1 378991727 complement(4667704..4668708) 1 NC_016863.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 4668708 990282004446 STMUK_4451 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ornithine carbamoyltransferase YP_005254891.1 4667704 R 990282 CDS YP_005254892.1 378991728 complement(4668820..4669752) 1 NC_016863.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 4669752 990282004447 STMUK_4452 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 carbamate kinase YP_005254892.1 4668820 R 990282 CDS YP_005254893.1 378991729 complement(4669763..4670983) 1 NC_016863.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 4670983 990282004448 STMUK_4453 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 arginine deiminase YP_005254893.1 4669763 R 990282 CDS YP_005254894.1 378991730 4671659..4672111 1 NC_016863.1 putative cytoplasmic protein 4672111 yjgK 990282004449 yjgK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254894.1 4671659 D 990282 CDS YP_005254895.1 378991731 complement(4672185..4673189) 1 NC_016863.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in th; ornithine carbamoyltransferase subunit I 4673189 argI 990282004450 argI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ornithine carbamoyltransferase subunit I YP_005254895.1 4672185 R 990282 CDS YP_005254896.1 378991732 4673355..4673771 1 NC_016863.1 hypothetical 15.7 dda protein in argI-miaE intergenic region (ORF15.6) (SW:YJGD_SALTY); hypothetical protein 4673771 yjgD 990282004451 yjgD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254896.1 4673355 D 990282 CDS YP_005254897.1 378991733 4673783..4674595 1 NC_016863.1 tRNA-hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA (SW:MIAE_SALTY); hydroxylase 4674595 miaE 990282004452 miaE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hydroxylase YP_005254897.1 4673783 D 990282 CDS YP_005254898.1 378991734 complement(4674829..4675317) 1 NC_016863.1 hypothetical 17.8 kKa protein in miaE 3'region (ORF 17.8) (SW:YTGA_SALTY); putative inner membrane protein 4675317 ytgA 990282004453 ytgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254898.1 4674829 R 990282 CDS YP_005254899.1 378991735 complement(4675424..4675927) 1 NC_016863.1 hypothetical 18.3 kDa protein in miaE 3'region (ORF 18.3) (SW:YJGM_SALTY); putative acetyltransferase 4675927 yjgM 990282004454 yjgM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative acetyltransferase YP_005254899.1 4675424 R 990282 CDS YP_005254900.1 378991736 4676122..4677309 1 NC_016863.1 hypothetical protein in miaE 3'region (ORF x) (SW:YJGN_SALTY); putative inner membrane protein 4677309 yjgN 990282004455 yjgN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254900.1 4676122 D 990282 CDS YP_005254901.1 378991737 complement(4677451..4680306) 1 NC_016863.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 4680306 valS 990282004456 valS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 valyl-tRNA synthetase YP_005254901.1 4677451 R 990282 CDS YP_005254902.1 378991738 complement(4680306..4680788) 1 NC_016863.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 4680788 holC 990282004457 holC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase III subunit chi YP_005254902.1 4680306 R 990282 CDS YP_005254903.1 378991739 complement(4680886..4682397) 1 NC_016863.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4682397 pepA 990282004458 pepA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 leucyl aminopeptidase YP_005254903.1 4680886 R 990282 CDS YP_005254904.1 378991740 complement(4682441..4682560) 1 NC_016863.1 putative cytoplasmic protein 4682560 990282004459 STMUK_4464 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254904.1 4682441 R 990282 CDS YP_005254905.1 378991741 4682792..4683892 1 NC_016863.1 putative permease 4683892 yjgP 990282004460 yjgP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005254905.1 4682792 D 990282 CDS YP_005254906.1 378991742 4683892..4684974 1 NC_016863.1 putative permease 4684974 yjgQ 990282004461 yjgQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative permease YP_005254906.1 4683892 D 990282 CDS YP_005254907.1 378991743 complement(4685169..4686167) 1 NC_016863.1 similar to Escherichia coli L-idonate transcriptional regulator (AAC77221.1); GalR/LacI family; L-idonate regulator 4686167 idnR 990282004462 idnR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-idonate regulator YP_005254907.1 4685169 R 990282 CDS YP_005254908.1 378991744 complement(4686231..4687550) 1 NC_016863.1 similar to Escherichia coli L-idonate transporter (AAC77222.1); GntP family; L-idonate transport protein 4687550 idnT 990282004463 idnT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-idonate transport protein YP_005254908.1 4686231 R 990282 CDS YP_005254909.1 378991745 complement(4687612..4688376) 1 NC_016863.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 4688376 idnO 990282004464 idnO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 gluconate 5-dehydrogenase YP_005254909.1 4687612 R 990282 CDS YP_005254910.1 378991746 complement(4688401..4689432) 1 NC_016863.1 NAD-binding; L-idonate 5-dehydrogenase 4689432 idnD 990282004465 idnD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 L-idonate 5-dehydrogenase YP_005254910.1 4688401 R 990282 CDS YP_005254911.1 378991747 4689649..4690179 1 NC_016863.1 similar to Escherichia coli gluconate kinase, thermosensitive glucokinase (AAC77225.1); D-gluconate kinase 4690179 idnK 990282004466 idnK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 D-gluconate kinase YP_005254911.1 4689649 D 990282 CDS YP_005254912.1 378991748 complement(4690207..4691226) 1 NC_016863.1 similar to Escherichia coli putative oxidoreductase (AAC77226.1); putative alcohol dehydrogenase 4691226 yjgB 990282004467 yjgB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative alcohol dehydrogenase YP_005254912.1 4690207 R 990282 CDS YP_005254913.1 378991749 4691752..4692039 1 NC_016863.1 similar to Escherichia coli putative prophage integrase (AAC75495.1); putative integrase 4692039 990282004469 STMUK_4474 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative integrase YP_005254913.1 4691752 D 990282 CDS YP_005254914.1 378991750 4692401..4695916 1 NC_016863.1 similar to Escherichia coli putative frameshift suppressor (AAC77264.1); superfamily I; putative DNA helicase 4695916 990282004470 STMUK_4475 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA helicase YP_005254914.1 4692401 D 990282 CDS YP_005254915.1 378991751 4696013..4697002 1 NC_016863.1 Mrr; putative restriction endonuclease 4697002 990282004471 STMUK_4476 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative restriction endonuclease YP_005254915.1 4696013 D 990282 CDS YP_005254916.1 378991752 complement(4697115..4699199) 1 NC_016863.1 similar to Escherichia coli DNA-binding, ATP-dependent protease La; heat shock K-protein (AAC73542.1); putative ATP-dependent Lon protease 4699199 990282004472 STMUK_4477 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ATP-dependent Lon protease YP_005254916.1 4697115 R 990282 CDS YP_005254917.1 378991753 complement(4699210..4701807) 1 NC_016863.1 putative cytoplasmic protein 4701807 990282004473 STMUK_4478 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254917.1 4699210 R 990282 CDS YP_005254918.1 378991754 complement(4701810..4702631) 1 NC_016863.1 putative cytoplasmic protein 4702631 990282004474 STMUK_4479 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254918.1 4701810 R 990282 CDS YP_005254919.1 378991755 complement(4702609..4703700) 1 NC_016863.1 putative ABC-type sugar/spermidine/putrescine transport system ATPase component 4703700 990282004475 STMUK_4480 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC-type sugar/spermidine/putrescine transport system ATPase component YP_005254919.1 4702609 R 990282 CDS YP_005254920.1 378991756 complement(4703700..4707377) 1 NC_016863.1 putative type II restriction enzyme methylase subunit 4707377 990282004476 STMUK_4481 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative type II restriction enzyme methylase subunit YP_005254920.1 4703700 R 990282 CDS YP_005254921.1 378991757 complement(4707423..4711064) 1 NC_016863.1 putative DNA repair ATPase 4711064 990282004477 STMUK_4482 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA repair ATPase YP_005254921.1 4707423 R 990282 CDS YP_005254922.1 378991758 complement(4711076..4711678) 1 NC_016863.1 putative cytoplasmic protein 4711678 990282004478 STMUK_4483 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254922.1 4711076 R 990282 CDS YP_005254923.1 378991759 complement(4711675..4712277) 1 NC_016863.1 putative inner membrane protein 4712277 990282004479 STMUK_4484 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254923.1 4711675 R 990282 CDS YP_005254924.1 378991760 complement(4712470..4712784) 1 NC_016863.1 similar to molybdopterin-guanine dinucleotide biosynthesis protein A (Pid: YP_001749801.1).; hypothetical protein 4712784 990282004480 STMUK_4485 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254924.1 4712470 R 990282 CDS YP_005254925.1 378991761 complement(4713103..4713828) 1 NC_016863.1 hypothetical protein 4713828 yeeN 990282004481 yeeN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254925.1 4713103 R 990282 CDS YP_005254926.1 378991762 complement(4714378..4716009) 1 NC_016863.1 similar to Escherichia coli putative methyltransferase (AAC77262.1); putative SAM-dependent methyltransferase 4716009 yjhP 990282004482 yjhP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative SAM-dependent methyltransferase YP_005254926.1 4714378 R 990282 CDS YP_005254927.1 378991763 complement(4716014..4716271) 1 NC_016863.1 hypothetical protein 4716271 990282004483 STMUK_4488 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254927.1 4716014 R 990282 CDS YP_005254928.1 378991764 4716760..4717368 1 NC_016863.1 putative cytoplasmic protein 4717368 990282004484 STMUK_4489 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254928.1 4716760 D 990282 CDS YP_005254929.1 378991765 4717878..4718615 1 NC_016863.1 putative inner membrane protein 4718615 990282004485 STMUK_4490 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254929.1 4717878 D 990282 CDS YP_005254930.1 378991766 4718891..4719802 1 NC_016863.1 IicA (gi|5616506); putative cytoplasmic protein 4719802 990282004486 STMUK_4491 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254930.1 4718891 D 990282 CDS YP_005254931.1 378991767 4720007..4720468 1 NC_016863.1 putative inner membrane or exported; hypothetical protein 4720468 990282004487 STMUK_4492 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254931.1 4720007 D 990282 CDS YP_005254932.1 378991768 complement(4720465..4721139) 1 NC_016863.1 putative dienelactone hydrolase 4721139 990282004488 STMUK_4493 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative dienelactone hydrolase YP_005254932.1 4720465 R 990282 CDS YP_005254933.1 378991769 4721489..4722262 1 NC_016863.1 regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 4722262 uxuR 990282004489 uxuR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional repressor UxuR YP_005254933.1 4721489 D 990282 CDS YP_005254934.1 378991770 complement(4722263..4723276) 1 NC_016863.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 4723276 trpS2 990282004490 trpS2 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 tryptophanyl-tRNA synthetase II YP_005254934.1 4722263 R 990282 CDS YP_005254935.1 378991771 4723994..4724524 1 NC_016863.1 putative cytoplasmic protein 4724524 990282004491 STMUK_4496 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254935.1 4723994 D 990282 CDS YP_005254936.1 378991772 4724763..4725497 1 NC_016863.1 similar to Escherichia coli putative resistance proteins (AAC75879.1); putative aspartate racemase 4725497 990282004492 STMUK_4497 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative aspartate racemase YP_005254936.1 4724763 D 990282 CDS YP_005254937.1 378991773 complement(4725503..4726411) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC77283.1); LysR family; putative DNA-binding transcriptional regulator 4726411 yjiE 990282004493 yjiE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA-binding transcriptional regulator YP_005254937.1 4725503 R 990282 CDS YP_005254938.1 378991774 complement(4726530..4727702) 1 NC_016863.1 similar to Escherichia coli isoaspartyl dipeptidase (AAC77284.1); isoaspartyl dipeptidase 4727702 iadA 990282004494 iadA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 isoaspartyl dipeptidase YP_005254938.1 4726530 R 990282 CDS YP_005254939.1 378991775 complement(4727715..4728176) 1 NC_016863.1 hypothetical protein 4728176 yjiG 990282004495 yjiG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254939.1 4727715 R 990282 CDS YP_005254940.1 378991776 complement(4728173..4729057) 1 NC_016863.1 putative inner membrane protein 4729057 yjiH 990282004496 yjiH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254940.1 4728173 R 990282 CDS YP_005254941.1 378991777 complement(4729717..4730901) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC77288.1); putative sugar transporter 4730901 yjiJ 990282004497 yjiJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative sugar transporter YP_005254941.1 4729717 R 990282 CDS YP_005254942.1 378991778 complement(4731121..4732392) 1 NC_016863.1 putative inner membrane protein 4732392 yjiN 990282004498 yjiN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254942.1 4731121 R 990282 CDS YP_005254943.1 378991779 complement(4732479..4733720) 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC77293.1); MFS family; putative transport protein 4733720 yjiO 990282004499 yjiO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transport protein YP_005254943.1 4732479 R 990282 CDS YP_005254944.1 378991780 4734199..4734714 1 NC_016863.1 putative inner membrane protein 4734714 990282004500 STMUK_4505 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254944.1 4734199 D 990282 CDS YP_005254945.1 378991781 4734895..4736265 1 NC_016863.1 similar to Escherichia coli putative aldehyde dehydrogenase (AAC74598.1); putative NAD-dependent aldehyde dehydrogenase 4736265 990282004501 STMUK_4506 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative NAD-dependent aldehyde dehydrogenase YP_005254945.1 4734895 D 990282 CDS YP_005254946.1 378991782 complement(4736360..4736503) 1 NC_016863.1 putative cytoplasmic protein 4736503 990282004502 STMUK_4507 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254946.1 4736360 R 990282 CDS YP_005254947.1 378991783 4736470..4736634 1 NC_016863.1 putative cytoplasmic protein 4736634 yjiS 990282004503 yjiS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254947.1 4736470 D 990282 CDS YP_005254948.1 378991784 complement(4736709..4737410) 1 NC_016863.1 putative inner membrane protein 4737410 990282004504 STMUK_4509 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254948.1 4736709 R 990282 CDS YP_005254949.1 378991785 complement(4737484..4737816) 1 NC_016863.1 involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response; endoribonuclease SymE 4737816 yjiW 990282004505 yjiW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 endoribonuclease SymE YP_005254949.1 4737484 R 990282 CDS YP_005254950.1 378991786 complement(4738043..4739452) 1 NC_016863.1 S protein; STYSJI specificity protein (SW:T1S_SALTY); specificity determinant for hsdM and hsdR; type I restriction enzyme specificity protein 4739452 hsdS 990282004506 hsdS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type I restriction enzyme specificity protein YP_005254950.1 4738043 R 990282 CDS YP_005254951.1 378991787 complement(4739449..4741038) 1 NC_016863.1 type I restriction enzyme STYSJI Mm protein (SW:T1M_SALTY); host modification; DNA methylase M 4741038 hsdM 990282004507 hsdM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA methylase M YP_005254951.1 4739449 R 990282 CDS YP_005254952.1 378991788 complement(4741196..4744705) 1 NC_016863.1 restriction endonuclease; the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'; subunit R is required for both nuclease and ATPase activities; type I restriction enzyme EcoKI subunit R 4744705 hsdR 990282004508 hsdR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 type I restriction enzyme EcoKI subunit R YP_005254952.1 4741196 R 990282 CDS YP_005254953.1 378991789 4744903..4745817 1 NC_016863.1 similar to Escherichia coli restriction of methylated adenine (AAC77307.1); restriction of methylated adenine; restriction endonuclease 4745817 mrr 990282004509 mrr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 restriction endonuclease YP_005254953.1 4744903 D 990282 CDS YP_005254954.1 378991790 4746086..4746373 1 NC_016863.1 putative inner membrane protein 4746373 990282004510 STMUK_4515 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254954.1 4746086 D 990282 CDS YP_005254955.1 378991791 4746360..4746662 1 NC_016863.1 putative cytoplasmic protein 4746662 990282004511 STMUK_4516 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254955.1 4746360 D 990282 CDS YP_005254956.1 378991792 complement(4746737..4747693) 1 NC_016863.1 putative GTP-binding protein YjiA 4747693 yjiA 990282004512 yjiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative GTP-binding protein YjiA YP_005254956.1 4746737 R 990282 CDS YP_005254957.1 378991793 complement(4747704..4747907) 1 NC_016863.1 putative cytoplasmic protein 4747907 yjiX 990282004513 yjiX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254957.1 4747704 R 990282 CDS YP_005254958.1 378991794 complement(4748002..4750152) 1 NC_016863.1 similar to Escherichia coli putative carbon starvation protein (AAC77310.1); putative carbon starvation protein 4750152 yjiY 990282004514 yjiY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative carbon starvation protein YP_005254958.1 4748002 R 990282 CDS YP_005254959.1 378991795 4750519..4752180 1 NC_016863.1 similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); methyl-accepting chemotaxis protein I 4752180 tsr 990282004515 tsr Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 methyl-accepting chemotaxis protein I YP_005254959.1 4750519 D 990282 CDS YP_005254960.1 378991796 4752504..4755269 1 NC_016863.1 similar to Escherichia coli psp operon transcriptional activator (AAC74385.1); NtrC family; contains ATPase domain; putative transcriptional regulator 4755269 990282004516 STMUK_4521 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254960.1 4752504 D 990282 CDS YP_005254961.1 378991797 4755371..4755793 1 NC_016863.1 similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative PTS permease 4755793 990282004517 STMUK_4522 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative PTS permease YP_005254961.1 4755371 D 990282 CDS YP_005254962.1 378991798 4755808..4756269 1 NC_016863.1 similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative PTS permease 4756269 990282004518 STMUK_4523 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative PTS permease YP_005254962.1 4755808 D 990282 CDS YP_005254963.1 378991799 4756295..4757074 1 NC_016863.1 similar to Escherichia coli PTS system N-acetylgalactosamine-specific IIC component 1 (AAC76173.1); putative PTS permease 4757074 990282004519 STMUK_4524 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative PTS permease YP_005254963.1 4756295 D 990282 CDS YP_005254964.1 378991800 4757064..4757900 1 NC_016863.1 similar to Escherichia coli PTS enzyme IID; mannose-specific (AAC74889.1); putative PTS permease 4757900 990282004520 STMUK_4525 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative PTS permease YP_005254964.1 4757064 D 990282 CDS YP_005254965.1 378991801 4757913..4758974 1 NC_016863.1 similar to Escherichia coli L-glutamine:D-fructose-6-phosphate aminotransferase (AAC76752.1); putative glucosamine-fructose-6-phosphate aminotransferase 4758974 990282004521 STMUK_4526 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glucosamine-fructose-6-phosphate aminotransferase YP_005254965.1 4757913 D 990282 CDS YP_005254966.1 378991802 4758971..4760002 1 NC_016863.1 similar to Escherichia coli putative transport protein (AAC76396.1); putative glucosamine-fructose-6-phosphate aminotransferase 4760002 990282004522 STMUK_4527 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative glucosamine-fructose-6-phosphate aminotransferase YP_005254966.1 4758971 D 990282 CDS YP_005254967.1 378991803 complement(4760136..4762388) 1 NC_016863.1 catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I 4762388 mdoB 990282004523 mdoB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoglycerol transferase I YP_005254967.1 4760136 R 990282 CDS YP_005254968.1 378991804 complement(4762710..4763171) 1 NC_016863.1 similar to Escherichia coli putative glycoprotein/receptor (AAC77316.1); hypothetical protein 4763171 yjjA 990282004524 yjjA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254968.1 4762710 R 990282 CDS YP_005254969.1 378991805 complement(4763229..4763966) 1 NC_016863.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 4763966 dnaC 990282004525 dnaC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA replication protein DnaC YP_005254969.1 4763229 R 990282 CDS YP_005254970.1 378991806 complement(4763969..4764508) 1 NC_016863.1 This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein; primosomal protein DnaI 4764508 dnaT 990282004526 dnaT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 primosomal protein DnaI YP_005254970.1 4763969 R 990282 CDS YP_005254971.1 378991807 complement(4764601..4765074) 1 NC_016863.1 hypothetical protein 4765074 990282004527 STMUK_4532 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254971.1 4764601 R 990282 CDS YP_005254972.1 378991808 complement(4765065..4765976) 1 NC_016863.1 similar to Escherichia coli putative structural protein (AAC77320.1); hypothetical protein 4765976 yjjP 990282004528 yjjP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254972.1 4765065 R 990282 CDS YP_005254973.1 378991809 4766554..4767279 1 NC_016863.1 similar to Escherichia coli putative regulator (AAC77321.1); LuxR/UhpA family; putative transcriptional regulator 4767279 yjjQ 990282004529 yjjQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transcriptional regulator YP_005254973.1 4766554 D 990282 CDS YP_005254974.1 378991810 4767240..4767914 1 NC_016863.1 regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; DNA-binding transcriptional activator BglJ 4767914 bglJ 990282004530 bglJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding transcriptional activator BglJ YP_005254974.1 4767240 D 990282 CDS YP_005254975.1 378991811 complement(4767965..4768423) 1 NC_016863.1 putative cytoplasmic protein 4768423 990282004531 STMUK_4536 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005254975.1 4767965 R 990282 CDS YP_005254976.1 378991812 complement(4768574..4769362) 1 NC_016863.1 involved in reduction of ferric iron in cytoplasmic ferrioxamine B; ferric hydroximate transport ferric iron reductase 4769362 fhuF 990282004532 fhuF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ferric hydroximate transport ferric iron reductase YP_005254976.1 4768574 R 990282 CDS YP_005254977.1 378991813 complement(4769483..4770547) 1 NC_016863.1 contains putative diguanylate cyclase/phosphodiesterase domain 1; hypothetical protein 4770547 990282004533 STMUK_4538 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254977.1 4769483 R 990282 CDS YP_005254978.1 378991814 4770798..4771034 1 NC_016863.1 putative inner membrane protein 4771034 990282004534 STMUK_4539 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005254978.1 4770798 D 990282 CDS YP_005254979.1 378991815 complement(4771575..4772603) 1 NC_016863.1 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase 4772603 rsmC 990282004538 rsmC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 16S ribosomal RNA m2G1207 methyltransferase YP_005254979.1 4771575 R 990282 CDS YP_005254980.1 378991816 4772706..4773143 1 NC_016863.1 with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 4773143 holD 990282004539 holD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase III subunit psi YP_005254980.1 4772706 D 990282 CDS YP_005254981.1 378991817 4773088..4773534 1 NC_016863.1 alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 4773534 rimI 990282004540 rimI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 ribosomal-protein-alanine N-acetyltransferase YP_005254981.1 4773088 D 990282 CDS YP_005254982.1 378991818 4773553..4774233 1 NC_016863.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 4774233 yjjG 990282004541 yjjG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nucleotidase YP_005254982.1 4773553 D 990282 CDS YP_005254983.1 378991819 4774325..4775914 1 NC_016863.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4775914 prfC 990282004542 prfC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 peptide chain release factor 3 YP_005254983.1 4774325 D 990282 CDS YP_005254984.1 378991820 4776316..4776933 1 NC_016863.1 similar to Escherichia coli hyperosmotically inducible periplasmic protein (AAC77329.1); RpoS-dependent stationary phase gene; hypothetical protein 4776933 osmY 990282004543 osmY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254984.1 4776316 D 990282 CDS YP_005254985.1 378991821 4777044..4777223 1 NC_016863.1 hypothetical protein 4777223 990282004544 STMUK_4549 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254985.1 4777044 D 990282 CDS YP_005254986.1 378991822 4777347..4778420 1 NC_016863.1 putative phosphoesterase 4778420 yjjU 990282004545 yjjU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphoesterase YP_005254986.1 4777347 D 990282 CDS YP_005254987.1 378991823 4778417..4779190 1 NC_016863.1 putative deoxyribonuclease YjjV 4779190 yjjV 990282004546 yjjV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative deoxyribonuclease YjjV YP_005254987.1 4778417 D 990282 CDS YP_005254988.1 378991824 complement(4779223..4780086) 1 NC_016863.1 similar to Escherichia coli putative activating enzyme (AAC77332.1); pyruvate formate lyase-activating enzyme 4780086 yjjW 990282004547 yjjW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 pyruvate formate lyase-activating enzyme YP_005254988.1 4779223 R 990282 CDS YP_005254989.1 378991825 complement(4780058..4781608) 1 NC_016863.1 hypothetical protein 4781608 yjjI 990282004548 yjjI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005254989.1 4780058 R 990282 CDS YP_005254990.1 378991826 4781850..4782647 1 NC_016863.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 4782647 deoC 990282004549 deoC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 deoxyribose-phosphate aldolase YP_005254990.1 4781850 D 990282 CDS YP_005254991.1 378991827 4782771..4784093 1 NC_016863.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 4784093 deoA 990282004550 deoA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 thymidine phosphorylase YP_005254991.1 4782771 D 990282 CDS YP_005254992.1 378991828 4784145..4785368 1 NC_016863.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 4785368 deoB 990282004551 deoB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphopentomutase YP_005254992.1 4784145 D 990282 CDS YP_005254993.1 378991829 4785578..4786297 1 NC_016863.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4786297 deoD 990282004552 deoD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 purine nucleoside phosphorylase YP_005254993.1 4785578 D 990282 CDS YP_005254994.1 378991830 complement(4786335..4786907) 1 NC_016863.1 putative outer membrane protein 4786907 990282004553 STMUK_4558 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005254994.1 4786335 R 990282 CDS YP_005254995.1 378991831 complement(4786904..4789312) 1 NC_016863.1 similar to Escherichia coli putative outer membrane protein (AAC76248.1); putative fimbrial usher protein 4789312 stjB 990282004554 stjB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial usher protein YP_005254995.1 4786904 R 990282 CDS YP_005254996.1 378991832 complement(4789326..4790033) 1 NC_016863.1 member of the periplasmic pilus chaperone family of proteins; putative periplasmic chaperone protein 4790033 stjC 990282004555 stjC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative periplasmic chaperone protein YP_005254996.1 4789326 R 990282 CDS YP_005254997.1 378991833 complement(4790111..4790800) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator (AAC76251.1); putative outer membrane protein 4790800 990282004556 STMUK_4561 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005254997.1 4790111 R 990282 CDS YP_005254998.1 378991834 complement(4790848..4791537) 1 NC_016863.1 similar to Escherichia coli putative transcriptional regulator (AAC76251.1); putative outer membrane protein 4791537 990282004557 STMUK_4562 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005254998.1 4790848 R 990282 CDS YP_005254999.1 378991835 complement(4791850..4792866) 1 NC_016863.1 Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-; lipoate-protein ligase A 4792866 lplA 990282004558 lplA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lipoate-protein ligase A YP_005254999.1 4791850 R 990282 CDS YP_005255000.1 378991836 complement(4792900..4793544) 1 NC_016863.1 membrane protein; transcribed divergently from serB; hypothetical protein 4793544 smp 990282004559 smp Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005255000.1 4792900 R 990282 CDS YP_005255001.1 378991837 4793661..4794629 1 NC_016863.1 catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 4794629 serB 990282004560 serB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoserine phosphatase YP_005255001.1 4793661 D 990282 CDS YP_005255002.1 378991838 4794713..4796095 1 NC_016863.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4796095 radA 990282004561 radA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA repair protein RadA YP_005255002.1 4794713 D 990282 CDS YP_005255003.1 378991839 4796246..4797478 1 NC_016863.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 4797478 nadR 990282004562 nadR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 nicotinamide-nucleotide adenylyltransferase YP_005255003.1 4796246 D 990282 CDS YP_005255004.1 378991840 complement(4797596..4799263) 1 NC_016863.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 4799263 yjjK 990282004563 yjjK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ABC transporter ATP-binding protein YP_005255004.1 4797596 R 990282 CDS YP_005255005.1 378991841 4799436..4801409 1 NC_016863.1 catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 4801409 slt 990282004564 slt Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 lytic murein transglycosylase YP_005255005.1 4799436 D 990282 CDS YP_005255006.1 378991842 4801467..4801793 1 NC_016863.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 4801793 trpR 990282004565 trpR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Trp operon repressor YP_005255006.1 4801467 D 990282 CDS YP_005255007.1 378991843 complement(4801895..4802410) 1 NC_016863.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of; NTPase 4802410 yjjX 990282004566 yjjX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 NTPase YP_005255007.1 4801895 R 990282 CDS YP_005255008.1 378991844 4802458..4803105 1 NC_016863.1 catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 4803105 gpmB 990282004567 gpmB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 phosphoglycerate mutase YP_005255008.1 4802458 D 990282 CDS YP_005255009.1 378991845 complement(4803102..4803971) 1 NC_016863.1 similar to Escherichia coli right origin-binding protein (AAC77349.1); AraC/XylS family; transcriptional regulator 4803971 rob 990282004568 rob Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 transcriptional regulator YP_005255009.1 4803102 R 990282 CDS YP_005255010.1 378991846 4804183..4804656 1 NC_016863.1 hypothetical protein 4804656 creA 990282004569 creA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005255010.1 4804183 D 990282 CDS YP_005255011.1 378991847 4804669..4805358 1 NC_016863.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4805358 creB 990282004570 creB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA-binding response regulator CreB YP_005255011.1 4804669 D 990282 CDS YP_005255012.1 378991848 4805358..4806782 1 NC_016863.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4806782 creC 990282004571 creC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 sensory histidine kinase CreC YP_005255012.1 4805358 D 990282 CDS YP_005255013.1 378991849 4806840..4808189 1 NC_016863.1 similar to Escherichia coli tolerance to colicin E2 (AAC77353.1); hypothetical protein 4808189 creD 990282004572 creD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005255013.1 4806840 D 990282 CDS YP_005255014.1 378991850 complement(4808247..4809332) 1 NC_016863.1 putative major fimbrial subunit 4809332 sthE 990282004573 sthE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative major fimbrial subunit YP_005255014.1 4808247 R 990282 CDS YP_005255015.1 378991851 complement(4809373..4809930) 1 NC_016863.1 similar to Escherichia coli fimbrial morphology (AAC77275.1); putative fimbrial subunit 4809930 sthD 990282004574 sthD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial subunit YP_005255015.1 4809373 R 990282 CDS YP_005255016.1 378991852 complement(4809948..4812485) 1 NC_016863.1 similar to Escherichia coli putative outer membrane protein; export function (AAC73634.1); putative fimbrial usher protein 4812485 sthB 990282004575 sthB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial usher protein YP_005255016.1 4809948 R 990282 CDS YP_005255017.1 378991853 complement(4812531..4813214) 1 NC_016863.1 similar to Escherichia coli periplasmic chaperone; required for type 1 fimbriae (AAC77272.1); putative fimbrial chaperone 4813214 sthA 990282004576 sthA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial chaperone YP_005255017.1 4812531 R 990282 CDS YP_005255018.1 378991854 complement(4813285..4813830) 1 NC_016863.1 similar to Escherichia coli fimbrial morphology (AAC77274.1); putative fimbrial chaperone 4813830 990282004577 STMUK_4582 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative fimbrial chaperone YP_005255018.1 4813285 R 990282 CDS YP_005255019.1 378991855 complement(4814169..4814840) 1 NC_016863.1 putative inner membrane protein 4814840 990282004578 STMUK_4583 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005255019.1 4814169 R 990282 CDS YP_005255020.1 378991856 complement(4815225..4815539) 1 NC_016863.1 hypothetical protein 4815539 990282004579 STMUK_4584 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005255020.1 4815225 R 990282 CDS YP_005255021.1 378991857 complement(4815806..4816522) 1 NC_016863.1 similar to Escherichia coli negative response regulator of genes in aerobic pathways with sensors ArcB and CpxA (AAC77354.1); OmpR family; regulates genes in aerobic pathways; two-component response regulator 4816522 arcA 990282004580 arcA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 two-component response regulator YP_005255021.1 4815806 R 990282 CDS YP_005255022.1 378991858 4816618..4816758 1 NC_016863.1 putative inner membrane protein 4816758 yjjY 990282004581 yjjY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005255022.1 4816618 D 990282 CDS YP_005255023.1 378991859 4817158..4817844 1 NC_016863.1 member of the SPOUT superfamily of methyltransferases; putative RNA methyltransferase 4817844 lasT 990282004582 lasT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative RNA methyltransferase YP_005255023.1 4817158 D 990282 CDS YP_005255024.1 378991861 join(93011..93277,1..42) 1 NC_016864.1 hypothetical protein 42 990282004583 STMUK_p101 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005255024.1 93011 D 990282 CDS YP_005255025.1 378991862 complement(484..780) 1 NC_016864.1 putative cytoplasmic protein 780 990282004584 STMUK_p001 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005255025.1 484 R 990282 CDS YP_005255026.1 378991863 complement(1264..1785) 1 NC_016864.1 hypothetical protein 1785 990282004585 STMUK_p002 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005255026.1 1264 R 990282 CDS YP_005255027.1 378991864 2461..2679 1 NC_016864.1 toxin addiction system: antidote 2679 ccdA 990282004586 ccdA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 toxin addiction system: antidote YP_005255027.1 2461 D 990282 CDS YP_005255028.1 378991865 2681..2986 1 NC_016864.1 toxin addiction system: toxin 2986 ccdB 990282004587 ccdB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 toxin addiction system: toxin YP_005255028.1 2681 D 990282 CDS YP_005255029.1 378991866 2988..3278 1 NC_016864.1 putative cytoplasmic protein 3278 990282004588 STMUK_p005 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005255029.1 2988 D 990282 CDS YP_005255030.1 378991867 3275..3796 1 NC_016864.1 putative cytoplasmic protein 3796 990282004589 STMUK_p006 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005255030.1 3275 D 990282 CDS YP_005255031.1 378991868 3831..4613 1 NC_016864.1 resolvase 4613 rsdB 990282004590 rsdB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 resolvase YP_005255031.1 3831 D 990282 CDS YP_005255032.1 378991869 4622..5173 1 NC_016864.1 diguanylate cyclase 5173 990282004591 STMUK_p008 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 diguanylate cyclase YP_005255032.1 4622 D 990282 CDS YP_005255033.1 378991870 5842..6327 1 NC_016864.1 putative inner membrane protein 6327 990282004592 STMUK_p009 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005255033.1 5842 D 990282 CDS YP_005255034.1 378991871 complement(7096..7446) 1 NC_016864.1 hypothetical protein 7446 spvD 990282004593 spvD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005255034.1 7096 R 990282 CDS YP_005255035.1 378991872 7664..7927 1 NC_016864.1 putative transposase, IS200-like protein 7927 990282004594 STMUK_p011 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transposase, IS200-like protein YP_005255035.1 7664 D 990282 CDS YP_005255036.1 378991873 complement(8054..8704) 1 NC_016864.1 hypothetical protein 8704 spvD 990282004595 spvD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005255036.1 8054 R 990282 CDS YP_005255037.1 378991874 complement(8965..9690) 1 NC_016864.1 hypothetical protein 9690 spvC 990282004596 spvC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005255037.1 8965 R 990282 CDS YP_005255038.1 378991875 complement(9971..11740) 1 NC_016864.1 hypothetical protein 11740 spvB 990282004597 spvB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005255038.1 9971 R 990282 CDS YP_005255039.1 378991876 complement(11922..12689) 1 NC_016864.1 outer membrane protein 12689 spvA 990282004598 spvA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 outer membrane protein YP_005255039.1 11922 R 990282 CDS YP_005255040.1 378991877 complement(13201..14094) 1 NC_016864.1 LysR family transcriptional regulator 14094 spvR 990282004599 spvR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 LysR family transcriptional regulator YP_005255040.1 13201 R 990282 CDS YP_005255041.1 378991878 14702..15739 1 NC_016864.1 putative integrase protein 15739 990282004600 STMUK_p017 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative integrase protein YP_005255041.1 14702 D 990282 CDS YP_005255042.1 378991879 complement(15928..16953) 1 NC_016864.1 putative phosphoribulokinase / uridine kinase family 16953 990282004601 STMUK_p018 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative phosphoribulokinase / uridine kinase family YP_005255042.1 15928 R 990282 CDS YP_005255043.1 378991880 complement(16886..18550) 1 NC_016864.1 putative resolvase 18550 rlgA 990282004602 rlgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative resolvase YP_005255043.1 16886 R 990282 CDS YP_005255044.1 378991881 complement(18534..19094) 1 NC_016864.1 putative resolvase 19094 rlgA 990282004603 rlgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative resolvase YP_005255044.1 18534 R 990282 CDS YP_005255045.1 378991882 complement(19301..20041) 1 NC_016864.1 putative carbonic anhydrase 20041 990282004604 STMUK_p021 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative carbonic anhydrase YP_005255045.1 19301 R 990282 CDS YP_005255046.1 378991883 complement(20696..21184) 1 NC_016864.1 putative cytoplasmic protein 21184 990282004605 STMUK_p022 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005255046.1 20696 R 990282 CDS YP_005255047.1 378991884 21443..22558 1 NC_016864.1 alpha-helical coiled coil protein 22558 tlpA 990282004606 tlpA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 alpha-helical coiled coil protein YP_005255047.1 21443 D 990282 CDS YP_005255048.1 378991885 22644..23060 1 NC_016864.1 putative DNA polymerase III epsilon subunit (3'-5' exonuclease) 23060 990282004607 STMUK_p024 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative DNA polymerase III epsilon subunit (3'-5' exonuclease) YP_005255048.1 22644 D 990282 CDS YP_005255049.1 378991886 complement(22754..23080) 1 NC_016864.1 putative cytoplasmic protein 23080 990282004608 STMUK_p025 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005255049.1 22754 R 990282 CDS YP_005255050.1 378991887 complement(24234..25175) 1 NC_016864.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 25175 umuC 990282004609 umuC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase V subunit UmuC YP_005255050.1 24234 R 990282 CDS YP_005255051.1 378991888 25590..26795 1 NC_016864.1 plasmid partition protein A 26795 parA 990282004610 parA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 plasmid partition protein A YP_005255051.1 25590 D 990282 CDS YP_005255052.1 378991889 26792..27769 1 NC_016864.1 plasmid partition protein B 27769 parB 990282004611 parB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 plasmid partition protein B YP_005255052.1 26792 D 990282 CDS YP_005255053.1 378991890 complement(27851..29125) 1 NC_016864.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 29125 umuC 990282004612 umuC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA polymerase V subunit UmuC YP_005255053.1 27851 R 990282 CDS YP_005255054.1 378991891 complement(29125..29547) 1 NC_016864.1 related to umuDC operon; mutagenesis by UV and mutagens 29547 samA 990282004613 samA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 mutagenesis by UV and mutagens YP_005255054.1 29125 R 990282 CDS YP_005255055.1 378991892 30058..30528 1 NC_016864.1 putative cytoplasmic protein 30528 990282004614 STMUK_p031 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005255055.1 30058 D 990282 CDS YP_005255056.1 378991893 30521..30877 1 NC_016864.1 putative cytoplasmic protein 30877 990282004615 STMUK_p032 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005255056.1 30521 D 990282 CDS YP_005255057.1 378991894 31259..31939 1 NC_016864.1 putative adenine-specific DNA methylase 31939 990282004616 STMUK_p033 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative adenine-specific DNA methylase YP_005255057.1 31259 D 990282 CDS YP_005255058.1 378991895 31939..32160 1 NC_016864.1 putative cytoplasmic protein 32160 990282004617 STMUK_p034 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005255058.1 31939 D 990282 CDS YP_005255059.1 378991896 32701..33465 1 NC_016864.1 putative inner membrane protein 33465 990282004618 STMUK_p035 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005255059.1 32701 D 990282 CDS YP_005255060.1 378991897 33961..34395 1 NC_016864.1 putative cytoplasmic protein 34395 990282004619 STMUK_p036 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005255060.1 33961 D 990282 CDS YP_005255061.1 378991898 34462..34896 1 NC_016864.1 putative cytoplasmic protein 34896 990282004620 STMUK_p037 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005255061.1 34462 D 990282 CDS YP_005255062.1 378991899 35132..35455 1 NC_016864.1 putative inner membrane protein 35455 990282004621 STMUK_p038 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative inner membrane protein YP_005255062.1 35132 D 990282 CDS YP_005255063.1 378991900 36186..36704 1 NC_016864.1 single-strand binding protein 36704 ssbB 990282004622 ssbB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 single-strand binding protein YP_005255063.1 36186 D 990282 CDS YP_005255064.1 378991901 36759..37001 1 NC_016864.1 putative cytoplasmic protein 37001 990282004623 STMUK_p040 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005255064.1 36759 D 990282 CDS YP_005255065.1 378991902 37070..39067 1 NC_016864.1 putative ParB-like nuclease domain protein 39067 990282004624 STMUK_p041 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative ParB-like nuclease domain protein YP_005255065.1 37070 D 990282 CDS YP_005255066.1 378991903 39107..39541 1 NC_016864.1 Plasmid SOS inhibition 39541 psiB 990282004625 psiB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Plasmid SOS inhibition YP_005255066.1 39107 D 990282 CDS YP_005255067.1 378991904 39538..40275 1 NC_016864.1 Plasmid SOS inhibition 40275 psiA 990282004626 psiA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Plasmid SOS inhibition YP_005255067.1 39538 D 990282 CDS YP_005255068.1 378991905 complement(41914..42384) 1 NC_016864.1 putative transglycosylase 42384 990282004627 STMUK_p044 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative transglycosylase YP_005255068.1 41914 R 990282 CDS YP_005255069.1 378991906 42799..43179 1 NC_016864.1 conjugative transfer: mating signal 43179 traM 990282004628 traM Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: mating signal YP_005255069.1 42799 D 990282 CDS YP_005255070.1 378991907 43372..44058 1 NC_016864.1 conjugative transfer: regulation 44058 traJ 990282004629 traJ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: regulation YP_005255070.1 43372 D 990282 CDS YP_005255071.1 378991908 44059..44379 1 NC_016864.1 conjugative transfer: oriT nicking 44379 traY 990282004630 traY Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: oriT nicking YP_005255071.1 44059 D 990282 CDS YP_005255072.1 378991909 44421..44783 1 NC_016864.1 conjugative transfer: fimbrial subunit 44783 traA 990282004631 traA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: fimbrial subunit YP_005255072.1 44421 D 990282 CDS YP_005255073.1 378991910 44798..45109 1 NC_016864.1 conjugative transfer: assembly 45109 traL 990282004632 traL Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: assembly YP_005255073.1 44798 D 990282 CDS YP_005255074.1 378991911 45131..45697 1 NC_016864.1 conjugative transfer: assembly 45697 traE 990282004633 traE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: assembly YP_005255074.1 45131 D 990282 CDS YP_005255075.1 378991912 45684..46424 1 NC_016864.1 conjugative transfer: assembly 46424 traK 990282004634 traK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: assembly YP_005255075.1 45684 D 990282 CDS YP_005255076.1 378991913 46424..47845 1 NC_016864.1 conjugative transfer: assembly 47845 traB 990282004635 traB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: assembly YP_005255076.1 46424 D 990282 CDS YP_005255077.1 378991914 47835..48431 1 NC_016864.1 conjugative transfer 48431 traP 990282004636 traP Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer YP_005255077.1 47835 D 990282 CDS YP_005255078.1 378991915 48409..48654 1 NC_016864.1 conjugative transfer protein 48654 trbD 990282004637 trbD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer protein YP_005255078.1 48409 D 990282 CDS YP_005255079.1 378991916 48651..49166 1 NC_016864.1 conjugative transfer: assembly 49166 traV 990282004638 traV Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: assembly YP_005255079.1 48651 D 990282 CDS YP_005255080.1 378991917 49301..49522 1 NC_016864.1 conjugative transfer 49522 traR 990282004639 traR Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer YP_005255080.1 49301 D 990282 CDS YP_005255081.1 378991918 49515..49982 1 NC_016864.1 conjugative transfer protein 49982 990282004640 STMUK_p057 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer protein YP_005255081.1 49515 D 990282 CDS YP_005255082.1 378991919 50378..53026 1 NC_016864.1 conjugative transfer: assembly 53026 traC 990282004641 traC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: assembly YP_005255082.1 50378 D 990282 CDS YP_005255083.1 378991920 53001..53387 1 NC_016864.1 conjugative transfer 53387 trbI 990282004642 trbI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer YP_005255083.1 53001 D 990282 CDS YP_005255084.1 378991921 53384..54016 1 NC_016864.1 conjugative transfer: assembly 54016 traW 990282004643 traW Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: assembly YP_005255084.1 53384 D 990282 CDS YP_005255085.1 378991922 54013..55005 1 NC_016864.1 conjugative transfer: assembly 55005 traU 990282004644 traU Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: assembly YP_005255085.1 54013 D 990282 CDS YP_005255086.1 378991923 55024..55332 1 NC_016864.1 conjugative transfer protein 55332 990282004645 STMUK_p062 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer protein YP_005255086.1 55024 D 990282 CDS YP_005255087.1 378991924 55317..55955 1 NC_016864.1 conjugative transfer: assembly 55955 trbC 990282004646 trbC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: assembly YP_005255087.1 55317 D 990282 CDS YP_005255088.1 378991925 56408..58234 1 NC_016864.1 conjugative transfer: aggregate stability 58234 traN 990282004647 traN Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: aggregate stability YP_005255088.1 56408 D 990282 CDS YP_005255089.1 378991926 58245..58460 1 NC_016864.1 conjugative transfer 58460 trbE 990282004648 trbE Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer YP_005255089.1 58245 D 990282 CDS YP_005255090.1 378991927 58472..59221 1 NC_016864.1 conjugative transfer: assembly 59221 traF 990282004649 traF Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: assembly YP_005255090.1 58472 D 990282 CDS YP_005255091.1 378991928 59435..59728 1 NC_016864.1 conjugative transfer: fimbrial synthesis 59728 traQ 990282004650 traQ Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: fimbrial synthesis YP_005255091.1 59435 D 990282 CDS YP_005255092.1 378991929 59715..60263 1 NC_016864.1 conjugative transfer 60263 trbB 990282004651 trbB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer YP_005255092.1 59715 D 990282 CDS YP_005255093.1 378991930 60253..61635 1 NC_016864.1 conjugative transfer: assembly 61635 traH 990282004652 traH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: assembly YP_005255093.1 60253 D 990282 CDS YP_005255094.1 378991931 61632..64454 1 NC_016864.1 conjugative transfer: assembly abd aggregate stability 64454 traG 990282004653 traG Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: assembly abd aggregate stability YP_005255094.1 61632 D 990282 CDS YP_005255095.1 378991932 64470..64964 1 NC_016864.1 conjugative transfer: surface exclusion 64964 traS 990282004654 traS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: surface exclusion YP_005255095.1 64470 D 990282 CDS YP_005255096.1 378991933 65000..65731 1 NC_016864.1 conjugative transfer: surface exclusion 65731 traT 990282004655 traT Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: surface exclusion YP_005255096.1 65000 D 990282 CDS YP_005255097.1 378991934 66108..68270 1 NC_016864.1 conjugative transfer: DNA transport 68270 traD 990282004656 traD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: DNA transport YP_005255097.1 66108 D 990282 CDS YP_005255098.1 378991935 68270..68989 1 NC_016864.1 conjugative transfer 68989 trbH 990282004657 trbH Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer YP_005255098.1 68270 D 990282 CDS YP_005255099.1 378991936 complement(68279..68677) 1 NC_016864.1 similar to mvpA, Shigella flexneri; MvpA-like protein 68677 990282004658 STMUK_p075 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 MvpA-like protein YP_005255099.1 68279 R 990282 CDS YP_005255100.1 378991937 complement(68677..68907) 1 NC_016864.1 putative cytoplasmic protein 68907 990282004659 STMUK_p076 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005255100.1 68677 R 990282 CDS YP_005255101.1 378991938 68986..74244 1 NC_016864.1 conjugative transfer: oriT nicking-unwinding 74244 traI 990282004660 traI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: oriT nicking-unwinding YP_005255101.1 68986 D 990282 CDS YP_005255102.1 378991939 74264..75004 1 NC_016864.1 conjugative transfer: fimbrial acetylation 75004 traX 990282004661 traX Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: fimbrial acetylation YP_005255102.1 74264 D 990282 CDS YP_005255103.1 378991940 75059..75622 1 NC_016864.1 conjugative transfer: regulation 75622 finO 990282004662 finO Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 conjugative transfer: regulation YP_005255103.1 75059 D 990282 CDS YP_005255104.1 378991941 75737..76021 1 NC_016864.1 putative cytoplasmic protein 76021 990282004663 STMUK_p080 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative cytoplasmic protein YP_005255104.1 75737 D 990282 CDS YP_005255105.1 378991942 76976..77242 1 NC_016864.1 DNA replication 77242 repC 990282004665 repC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA replication YP_005255105.1 76976 D 990282 CDS YP_005255106.1 378991943 77365..77487 1 NC_016864.1 DNA replication 77487 repA3 990282004666 repA3 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA replication YP_005255106.1 77365 D 990282 CDS YP_005255107.1 378991944 77492..77569 1 NC_016864.1 replication of plasmid 77569 tap 990282004667 tap Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 replication of plasmid YP_005255107.1 77492 D 990282 CDS YP_005255108.1 378991945 77550..78431 1 NC_016864.1 DNA replication 78431 repA 990282004668 repA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA replication YP_005255108.1 77550 D 990282 CDS YP_005255109.1 378991946 79372..79512 1 NC_016864.1 putative outer membrane protein 79512 990282004669 STMUK_p086 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005255109.1 79372 D 990282 CDS YP_005255110.1 378991947 complement(79609..80367) 1 NC_016864.1 sdiA-regulated protein; AraC family transcriptional regulator 80367 srgC 990282004670 srgC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 AraC family transcriptional regulator YP_005255110.1 79609 R 990282 CDS YP_005255111.1 378991948 complement(80634..81191) 1 NC_016864.1 resistance to complement killing 81191 rcK 990282004671 rcK Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 resistance to complement killing YP_005255111.1 80634 R 990282 CDS YP_005255112.1 378991949 complement(81281..82180) 1 NC_016864.1 sdiA-regulated protein; putative outer membrane protein 82180 srgB 990282004672 srgB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005255112.1 81281 R 990282 CDS YP_005255113.1 378991950 complement(82313..82966) 1 NC_016864.1 sdiA-regulated protein; putative thiol-disulfide isomerase or thioredoxin 82966 srgA 990282004673 srgA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative thiol-disulfide isomerase or thioredoxin YP_005255113.1 82313 R 990282 CDS YP_005255114.1 378991951 complement(83211..83561) 1 NC_016864.1 LuxR family regulatory protein 83561 990282004674 STMUK_p091 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 LuxR family regulatory protein YP_005255114.1 83211 R 990282 CDS YP_005255115.1 378991952 complement(83546..83758) 1 NC_016864.1 plasmid-encoded fimbriae; regulatory 83758 pefI 990282004675 pefI Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 plasmid-encoded fimbriae; regulatory YP_005255115.1 83546 R 990282 CDS YP_005255116.1 378991953 complement(84190..85065) 1 NC_016864.1 putative outer membrane protein 85065 990282004676 STMUK_p093 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005255116.1 84190 R 990282 CDS YP_005255117.1 378991954 complement(85318..85875) 1 NC_016864.1 putative outer membrane protein 85875 990282004677 STMUK_p094 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 putative outer membrane protein YP_005255117.1 85318 R 990282 CDS YP_005255118.1 378991955 complement(85890..86582) 1 NC_016864.1 plasmid-encoded fimbriae;chaperone 86582 pefD 990282004678 pefD Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 plasmid-encoded fimbriae;chaperone YP_005255118.1 85890 R 990282 CDS YP_005255119.1 378991956 complement(86575..88983) 1 NC_016864.1 plasmid-encoded fimbriae; usher protein 88983 pefC 990282004679 pefC Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 plasmid-encoded fimbriae; usher protein YP_005255119.1 86575 R 990282 CDS YP_005255120.1 378991957 complement(89211..89729) 1 NC_016864.1 plasmid-encoded fimbriae; major fimbrial subunit 89729 pefA 990282004680 pefA Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 plasmid-encoded fimbriae; major fimbrial subunit YP_005255120.1 89211 R 990282 CDS YP_005255121.1 378991958 complement(90004..90306) 1 NC_016864.1 plasmid-encoded fimbriae;regulation 90306 pefB 990282004681 pefB Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 plasmid-encoded fimbriae;regulation YP_005255121.1 90004 R 990282 CDS YP_005255122.1 378991959 91203..91406 1 NC_016864.1 hypothetical protein 91406 990282004682 STMUK_p099 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 hypothetical protein YP_005255122.1 91203 D 990282 CDS YP_005255123.1 378991960 complement(92278..93267) 1 NC_016864.1 DNA replication 93267 repA2 990282004683 repA2 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 DNA replication YP_005255123.1 92278 R 990282 CDS