-- dump date 20140620_064012 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_732140.1 113968347 4250600 79..1461 1 NC_008321.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1461 dnaA 4250600 dnaA Shewanella sp. MR-4 chromosomal replication initiation protein YP_732140.1 79 D 60480 CDS YP_732141.1 113968348 4250601 1482..2582 1 NC_008321.1 KEGG: son:SO0009 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 2582 4250601 Shewmr4_0002 Shewanella sp. MR-4 DNA polymerase III subunit beta YP_732141.1 1482 D 60480 CDS YP_732142.1 113968349 4250602 2744..3826 1 NC_008321.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3826 recF 4250602 recF Shewanella sp. MR-4 recombination protein F YP_732142.1 2744 D 60480 CDS YP_732143.1 113968350 4250603 3843..6260 1 NC_008321.1 KEGG: son:SO0011 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 6260 4250603 Shewmr4_0004 Shewanella sp. MR-4 DNA gyrase subunit B YP_732143.1 3843 D 60480 CDS YP_732144.1 113968351 4250604 complement(6341..6997) 1 NC_008321.1 PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO0012 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 6997 4250604 Shewmr4_0005 Shewanella sp. MR-4 glutathione S-transferase domain-containing protein YP_732144.1 6341 R 60480 CDS YP_732145.1 113968352 4250605 7124..7972 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vvu:VV20874 transcriptional regulator; LysR family transcriptional regulator 7972 4250605 Shewmr4_0006 Shewanella sp. MR-4 LysR family transcriptional regulator YP_732145.1 7124 D 60480 CDS YP_732146.1 113968353 4250606 8128..9171 1 NC_008321.1 KEGG: son:SO0013 hypothetical protein; putative signal transduction protein 9171 4250606 Shewmr4_0007 Shewanella sp. MR-4 putative signal transduction protein YP_732146.1 8128 D 60480 CDS YP_732147.1 113968354 4250607 complement(9235..11301) 1 NC_008321.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 11301 glyS 4250607 glyS Shewanella sp. MR-4 glycyl-tRNA synthetase subunit beta YP_732147.1 9235 R 60480 CDS YP_732148.1 113968355 4250608 complement(11311..12216) 1 NC_008321.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 12216 glyQ 4250608 glyQ Shewanella sp. MR-4 glycyl-tRNA synthetase subunit alpha YP_732148.1 11311 R 60480 CDS YP_732149.1 113968356 4250609 12335..12907 1 NC_008321.1 KEGG: son:SO0016 DNA-3-methyladenine glycosidase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 12907 4250609 Shewmr4_0010 Shewanella sp. MR-4 DNA-3-methyladenine glycosylase I YP_732149.1 12335 D 60480 CDS YP_732150.1 113968357 4250610 complement(12996..16184) 1 NC_008321.1 PFAM: amidohydrolase; WD40 domain protein beta Propeller; KEGG: son:SO0017 hypothetical amidohydrolase; amidohydrolase 16184 4250610 Shewmr4_0011 Shewanella sp. MR-4 amidohydrolase YP_732150.1 12996 R 60480 CDS YP_732151.1 113968358 4250611 complement(16381..16818) 1 NC_008321.1 KEGG: son:SO0018 hypothetical protein; hypothetical protein 16818 4250611 Shewmr4_0012 Shewanella sp. MR-4 hypothetical protein YP_732151.1 16381 R 60480 CDS YP_732152.1 113968359 4250612 complement(16854..17099) 1 NC_008321.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 17099 4250612 Shewmr4_0013 Shewanella sp. MR-4 sulfur transfer protein SirA YP_732152.1 16854 R 60480 CDS YP_732153.1 113968360 4250613 complement(17258..18451) 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cvi:CV0239 hypothetical protein; diguanylate cyclase 18451 4250613 Shewmr4_0014 Shewanella sp. MR-4 diguanylate cyclase YP_732153.1 17258 R 60480 CDS YP_732154.1 113968361 4250614 complement(18661..19464) 1 NC_008321.1 PFAM: Integrase, catalytic region; KEGG: pcr:Pcryo_0715 Integrase, catalytic region; integrase catalytic subunit 19464 4250614 Shewmr4_0015 Shewanella sp. MR-4 integrase catalytic subunit YP_732154.1 18661 R 60480 CDS YP_732155.1 113968362 4250615 complement(19494..19889) 1 NC_008321.1 KEGG: dde:Dde_2987 transposase; transposase 19889 4250615 Shewmr4_0016 Shewanella sp. MR-4 transposase YP_732155.1 19494 R 60480 CDS YP_732156.1 113968363 4250616 complement(19987..21150) 1 NC_008321.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 21150 fadA 4250616 fadA Shewanella sp. MR-4 3-ketoacyl-CoA thiolase YP_732156.1 19987 R 60480 CDS YP_732157.1 113968364 4250617 complement(21173..23323) 1 NC_008321.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 23323 fadB 4250617 fadB Shewanella sp. MR-4 multifunctional fatty acid oxidation complex subunit alpha YP_732157.1 21173 R 60480 CDS YP_732158.1 113968365 4250705 23767..25086 1 NC_008321.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 25086 4250705 Shewmr4_0019 Shewanella sp. MR-4 proline dipeptidase YP_732158.1 23767 D 60480 CDS YP_732159.1 113968366 4250706 25102..25716 1 NC_008321.1 PFAM: protein of unknown function UPF0029; KEGG: son:SO0023 conserved hypothetical protein TIGR00257; hypothetical protein 25716 4250706 Shewmr4_0020 Shewanella sp. MR-4 hypothetical protein YP_732159.1 25102 D 60480 CDS YP_732160.1 113968367 4250707 25794..27251 1 NC_008321.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: son:SO0024 potassium uptake protein TrkH; TrkH family potassium uptake protein 27251 4250707 Shewmr4_0021 Shewanella sp. MR-4 TrkH family potassium uptake protein YP_732160.1 25794 D 60480 CDS YP_732161.1 113968368 4250708 27253..27777 1 NC_008321.1 KEGG: son:SO0025 protoporphyrinogen oxidase; protoporphyrinogen oxidase 27777 4250708 Shewmr4_0022 Shewanella sp. MR-4 protoporphyrinogen oxidase YP_732161.1 27253 D 60480 CDS YP_732162.1 113968369 4250709 complement(27840..28148) 1 NC_008321.1 PFAM: regulatory protein, ArsR; KEGG: son:SO0026 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 28148 4250709 Shewmr4_0023 Shewanella sp. MR-4 ArsR family transcriptional regulator YP_732162.1 27840 R 60480 CDS YP_732163.1 113968370 4250710 28348..28902 1 NC_008321.1 KEGG: son:SO0027 protoporphyrinogen oxidase; protoporphyrinogen oxidase 28902 4250710 Shewmr4_0024 Shewanella sp. MR-4 protoporphyrinogen oxidase YP_732163.1 28348 D 60480 CDS YP_732164.1 113968371 4250711 complement(28949..30391) 1 NC_008321.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: son:SO0028 potassium uptake protein TrkH; TrkH family potassium uptake protein 30391 4250711 Shewmr4_0025 Shewanella sp. MR-4 TrkH family potassium uptake protein YP_732164.1 28949 R 60480 CDS YP_732165.1 113968372 4250712 complement(30403..31812) 1 NC_008321.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 31812 trkA 4250712 trkA Shewanella sp. MR-4 potassium transporter peripheral membrane component YP_732165.1 30403 R 60480 CDS YP_732166.1 113968373 4250713 complement(31828..33117) 1 NC_008321.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; Methyltransferase type 11; KEGG: son:SO0030 Sun protein; sun protein 33117 4250713 Shewmr4_0027 Shewanella sp. MR-4 sun protein YP_732166.1 31828 R 60480 CDS YP_732167.1 113968374 4250714 complement(33117..34073) 1 NC_008321.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: son:SO0031 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 34073 4250714 Shewmr4_0028 Shewanella sp. MR-4 methionyl-tRNA formyltransferase YP_732167.1 33117 R 60480 CDS YP_732168.1 113968375 4250715 complement(34089..34595) 1 NC_008321.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 34595 def 4250715 def Shewanella sp. MR-4 peptide deformylase YP_732168.1 34089 R 60480 CDS YP_732169.1 113968376 4250716 34721..35845 1 NC_008321.1 PFAM: Peptidoglycan-binding LysM; KEGG: son:SO0033 LysM domain protein; peptidoglycan-binding LysM 35845 4250716 Shewmr4_0030 Shewanella sp. MR-4 peptidoglycan-binding LysM YP_732169.1 34721 D 60480 CDS YP_732170.1 113968377 4250717 35929..36945 1 NC_008321.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: son:SO0034 DNA processing protein DprA, putative; DNA protecting protein DprA 36945 4250717 Shewmr4_0031 Shewanella sp. MR-4 DNA protecting protein DprA YP_732170.1 35929 D 60480 CDS YP_732171.1 113968378 4250718 36948..37424 1 NC_008321.1 PFAM: protein of unknown function DUF494; KEGG: son:SO0035 Smg protein; hypothetical protein 37424 4250718 Shewmr4_0032 Shewanella sp. MR-4 hypothetical protein YP_732171.1 36948 D 60480 CDS YP_732172.1 113968379 4250719 37547..38110 1 NC_008321.1 PFAM: DNA topoisomerase, type IA, zn finger domain protein; KEGG: son:SO0036 topoisomerase DNA-binding C4 zinc finger domain protein; DNA topoisomerase type IA Zn finger domain-containing protein 38110 4250719 Shewmr4_0033 Shewanella sp. MR-4 DNA topoisomerase type IA Zn finger domain-containing protein YP_732172.1 37547 D 60480 CDS YP_732173.1 113968380 4250720 38249..38815 1 NC_008321.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain protein; KEGG: son:SO0037 Sua5/YciO/YrdC/YwlC family protein; translation factor SUA5 38815 4250720 Shewmr4_0034 Shewanella sp. MR-4 translation factor SUA5 YP_732173.1 38249 D 60480 CDS YP_732174.1 113968381 4250721 38845..39753 1 NC_008321.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 39753 4250721 Shewmr4_0035 Shewanella sp. MR-4 coproporphyrinogen III oxidase YP_732174.1 38845 D 60480 CDS YP_732175.1 113968382 4250652 complement(39785..40222) 1 NC_008321.1 PFAM: globin; KEGG: son:SO0039 hypothetical globin; globin 40222 4250652 Shewmr4_0036 Shewanella sp. MR-4 globin YP_732175.1 39785 R 60480 CDS YP_732176.1 113968383 4250653 40394..41272 1 NC_008321.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 41272 aroE 4250653 aroE Shewanella sp. MR-4 shikimate 5-dehydrogenase YP_732176.1 40394 D 60480 CDS YP_732177.1 113968384 4250654 41293..41568 1 NC_008321.1 PFAM: protein of unknown function DUF1488; KEGG: son:SO0041 hypothetical protein; hypothetical protein 41568 4250654 Shewmr4_0038 Shewanella sp. MR-4 hypothetical protein YP_732177.1 41293 D 60480 CDS YP_732178.1 113968385 4250655 complement(41625..42173) 1 NC_008321.1 KEGG: son:SO0042 carbonic anhydrase, family 3; carbonic anhydrase 42173 4250655 Shewmr4_0039 Shewanella sp. MR-4 carbonic anhydrase YP_732178.1 41625 R 60480 CDS YP_732179.1 113968386 4250656 48200..48454 1 NC_008321.1 PFAM: protein of unknown function UPF0153; KEGG: son:SO0044 hypothetical protein; hypothetical protein 48454 4250656 Shewmr4_0040 Shewanella sp. MR-4 hypothetical protein YP_732179.1 48200 D 60480 CDS YP_732180.1 113968387 4250657 48476..48931 1 NC_008321.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: son:SO0045 Rrf2 family protein; BadM/Rrf2 family transcriptional regulator 48931 4250657 Shewmr4_0041 Shewanella sp. MR-4 BadM/Rrf2 family transcriptional regulator YP_732180.1 48476 D 60480 CDS YP_732181.1 113968388 4250658 complement(48906..49661) 1 NC_008321.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: son:SO0046 hypothetical protein; hypothetical protein 49661 4250658 Shewmr4_0042 Shewanella sp. MR-4 hypothetical protein YP_732181.1 48906 R 60480 CDS YP_732182.1 113968389 4250659 complement(49674..50879) 1 NC_008321.1 KEGG: son:SO0047 carboxyl-terminal protease, putative; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; C-terminal processing peptidase-3 50879 4250659 Shewmr4_0043 Shewanella sp. MR-4 C-terminal processing peptidase-3 YP_732182.1 49674 R 60480 CDS YP_732183.1 113968390 4250660 complement(52071..53615) 1 NC_008321.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 53615 4250660 Shewmr4_0045 Shewanella sp. MR-4 phosphoglyceromutase YP_732183.1 52071 R 60480 CDS YP_732184.1 113968391 4250661 53881..54315 1 NC_008321.1 PFAM: Rhodanese domain protein; KEGG: son:SO0050 rhodanese domain protein; rhodanese domain-containing protein 54315 4250661 Shewmr4_0046 Shewanella sp. MR-4 rhodanese domain-containing protein YP_732184.1 53881 D 60480 CDS YP_732185.1 113968392 4250662 54576..55061 1 NC_008321.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 55061 4250662 Shewmr4_0047 Shewanella sp. MR-4 preprotein translocase subunit SecB YP_732185.1 54576 D 60480 CDS YP_732186.1 113968393 4250663 55066..56082 1 NC_008321.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 56082 gpsA 4250663 gpsA Shewanella sp. MR-4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_732186.1 55066 D 60480 CDS YP_732187.1 113968394 4250664 56321..57505 1 NC_008321.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0054 conserved hypothetical protein TIGR00275; hypothetical protein 57505 4250664 Shewmr4_0049 Shewanella sp. MR-4 hypothetical protein YP_732187.1 56321 D 60480 CDS YP_732188.1 113968395 4250665 58053..59630 1 NC_008321.1 hypothetical protein 59630 4250665 Shewmr4_0050 Shewanella sp. MR-4 hypothetical protein YP_732188.1 58053 D 60480 CDS YP_732189.1 113968396 4250666 complement(59838..61199) 1 NC_008321.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: son:SO0057 potassium uptake protein, Trk family; TrkH family potassium uptake protein 61199 4250666 Shewmr4_0051 Shewanella sp. MR-4 TrkH family potassium uptake protein YP_732189.1 59838 R 60480 CDS YP_732190.1 113968397 4250667 complement(61201..61899) 1 NC_008321.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: son:SO0058 potassium uptake protein, putative; TrkA domain-containing protein 61899 4250667 Shewmr4_0052 Shewanella sp. MR-4 TrkA domain-containing protein YP_732190.1 61201 R 60480 CDS YP_732191.1 113968398 4250668 complement(61944..62633) 1 NC_008321.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO0059 transcriptional regulatory protein KdpE; two component transcriptional regulator 62633 4250668 Shewmr4_0053 Shewanella sp. MR-4 two component transcriptional regulator YP_732191.1 61944 R 60480 CDS YP_732192.1 113968399 4250669 complement(62634..63680) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0060 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 63680 4250669 Shewmr4_0054 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_732192.1 62634 R 60480 CDS YP_732193.1 113968400 4250934 complement(63908..64831) 1 NC_008321.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: csa:Csal_1778 pirin-like protein; pirin domain-containing protein 64831 4250934 Shewmr4_0055 Shewanella sp. MR-4 pirin domain-containing protein YP_732193.1 63908 R 60480 CDS YP_732194.1 113968401 4250935 65316..66989 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: cvi:CV1771 probable sensor kinase protein; signal transduction histidine kinase, LytS 66989 4250935 Shewmr4_0056 Shewanella sp. MR-4 signal transduction histidine kinase, LytS YP_732194.1 65316 D 60480 CDS YP_732195.1 113968402 4250936 66983..67714 1 NC_008321.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: cvi:CV1770 probable two-component transcriptional regulator; response regulator receiver protein 67714 4250936 Shewmr4_0057 Shewanella sp. MR-4 response regulator receiver protein YP_732195.1 66983 D 60480 CDS YP_732196.1 113968403 4250937 67822..69066 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: cvi:CV1769 probable resistance protein; major facilitator transporter 69066 4250937 Shewmr4_0058 Shewanella sp. MR-4 major facilitator transporter YP_732196.1 67822 D 60480 CDS YP_732197.1 113968404 4250938 complement(69156..69776) 1 NC_008321.1 KEGG: ppr:PBPRA1645 hypothetical protein; hypothetical protein 69776 4250938 Shewmr4_0059 Shewanella sp. MR-4 hypothetical protein YP_732197.1 69156 R 60480 CDS YP_732198.1 113968405 4250939 70202..70939 1 NC_008321.1 PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_1586 protein of unknown function DUF81; hypothetical protein 70939 4250939 Shewmr4_0060 Shewanella sp. MR-4 hypothetical protein YP_732198.1 70202 D 60480 CDS YP_732199.1 113968406 4250940 71040..71519 1 NC_008321.1 PFAM: NLP/P60 protein; KEGG: son:SO0061 lipoprotein, NLP/P60 family; NLP/P60 protein 71519 4250940 Shewmr4_0061 Shewanella sp. MR-4 NLP/P60 protein YP_732199.1 71040 D 60480 CDS YP_732200.1 113968407 4250941 71544..72992 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: vch:VC1597 multidrug transporter, putative; major facilitator transporter 72992 4250941 Shewmr4_0062 Shewanella sp. MR-4 major facilitator transporter YP_732200.1 71544 D 60480 CDS YP_732201.1 113968408 4250942 73081..74109 1 NC_008321.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: hch:HCH_04796 transcriptional regulator; LacI family transcription regulator 74109 4250942 Shewmr4_0063 Shewanella sp. MR-4 LacI family transcription regulator YP_732201.1 73081 D 60480 CDS YP_732202.1 113968409 4250943 complement(74168..75652) 1 NC_008321.1 KEGG: atc:AGR_pTi_251 sucrose phosphorylase SplA; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; sucrose phosphorylase 75652 4250943 Shewmr4_0064 Shewanella sp. MR-4 sucrose phosphorylase YP_732202.1 74168 R 60480 CDS YP_732203.1 113968410 4250944 75909..77129 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC1133 transporter, putative; major facilitator transporter 77129 4250944 Shewmr4_0065 Shewanella sp. MR-4 major facilitator transporter YP_732203.1 75909 D 60480 CDS YP_732204.1 113968411 4250945 77389..79785 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC1136 TonB-dependent receptor; TonB-dependent receptor 79785 4250945 Shewmr4_0066 Shewanella sp. MR-4 TonB-dependent receptor YP_732204.1 77389 D 60480 CDS YP_732205.1 113968412 4250946 79878..80837 1 NC_008321.1 PFAM: PfkB domain protein; KEGG: csa:Csal_0931 PfkB; ribokinase-like domain-containing protein 80837 4250946 Shewmr4_0067 Shewanella sp. MR-4 ribokinase-like domain-containing protein YP_732205.1 79878 D 60480 CDS YP_732206.1 113968413 4250947 81043..81576 1 NC_008321.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 81576 mogA 4250947 mogA Shewanella sp. MR-4 molybdenum cofactor biosynthesis protein MogA YP_732206.1 81043 D 60480 CDS YP_732207.1 113968414 4250948 complement(81610..81828) 1 NC_008321.1 hypothetical protein 81828 4250948 Shewmr4_0069 Shewanella sp. MR-4 hypothetical protein YP_732207.1 81610 R 60480 CDS YP_732208.1 113968415 4250949 81980..83023 1 NC_008321.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: bur:Bcep18194_B1553 transcriptional regulator, AraC family; transcriptional regulator 83023 4250949 Shewmr4_0070 Shewanella sp. MR-4 transcriptional regulator YP_732208.1 81980 D 60480 CDS YP_732209.1 113968416 4250950 complement(83027..83287) 1 NC_008321.1 KEGG: son:SO0068 hypothetical protein; hypothetical protein 83287 4250950 Shewmr4_0071 Shewanella sp. MR-4 hypothetical protein YP_732209.1 83027 R 60480 CDS YP_732210.1 113968417 4250951 complement(83337..84476) 1 NC_008321.1 KEGG: son:SO0069 transport protein, putative; transport protein 84476 4250951 Shewmr4_0072 Shewanella sp. MR-4 transport protein YP_732210.1 83337 R 60480 CDS YP_732211.1 113968418 4250952 complement(84565..85299) 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0070 ATP-binding transport protein NatA; ABC transporter-like protein 85299 4250952 Shewmr4_0073 Shewanella sp. MR-4 ABC transporter-like protein YP_732211.1 84565 R 60480 CDS YP_732212.1 113968419 4250953 complement(85302..86909) 1 NC_008321.1 PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: son:SO0071 hydrolase, alpha/beta hydrolase fold family; TAP domain-containing protein 86909 4250953 Shewmr4_0074 Shewanella sp. MR-4 TAP domain-containing protein YP_732212.1 85302 R 60480 CDS YP_732213.1 113968420 4250954 87002..87367 1 NC_008321.1 PFAM: regulatory protein GntR, HTH; KEGG: son:SO0072 transcriptional regulator, GntR family; GntR family transcriptional regulator 87367 4250954 Shewmr4_0075 Shewanella sp. MR-4 GntR family transcriptional regulator YP_732213.1 87002 D 60480 CDS YP_732214.1 113968421 4250955 87414..88277 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0073 ABC transporter, ATP-binding protein; ABC transporter-like protein 88277 4250955 Shewmr4_0076 Shewanella sp. MR-4 ABC transporter-like protein YP_732214.1 87414 D 60480 CDS YP_732215.1 113968422 4250956 88274..89584 1 NC_008321.1 KEGG: son:SO0074 hypothetical protein; hypothetical protein 89584 4250956 Shewmr4_0077 Shewanella sp. MR-4 hypothetical protein YP_732215.1 88274 D 60480 CDS YP_732216.1 113968423 4250957 89713..91506 1 NC_008321.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0075 AMP-binding family protein; AMP-dependent synthetase and ligase 91506 4250957 Shewmr4_0078 Shewanella sp. MR-4 AMP-dependent synthetase and ligase YP_732216.1 89713 D 60480 CDS YP_732217.1 113968424 4250958 91647..94136 1 NC_008321.1 PFAM: MORN variant repeat protein; KEGG: son:SO0076 hypothetical protein; MORN repeat-containing protein 94136 4250958 Shewmr4_0079 Shewanella sp. MR-4 MORN repeat-containing protein YP_732217.1 91647 D 60480 CDS YP_732218.1 113968425 4250959 94244..94654 1 NC_008321.1 PFAM: thioesterase superfamily protein; KEGG: son:SO0077 hypothetical 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 94654 4250959 Shewmr4_0080 Shewanella sp. MR-4 thioesterase superfamily protein YP_732218.1 94244 D 60480 CDS YP_732219.1 113968426 4250960 94772..95320 1 NC_008321.1 PFAM: HPP family protein; KEGG: tdn:Tmden_1127 HPP; HPP family protein 95320 4250960 Shewmr4_0081 Shewanella sp. MR-4 HPP family protein YP_732219.1 94772 D 60480 CDS YP_732220.1 113968427 4250961 complement(95572..95979) 1 NC_008321.1 KEGG: son:SO0078 hypothetical protein; hypothetical protein 95979 4250961 Shewmr4_0082 Shewanella sp. MR-4 hypothetical protein YP_732220.1 95572 R 60480 CDS YP_732221.1 113968428 4250962 complement(96029..96292) 1 NC_008321.1 KEGG: son:SO0079 hypothetical protein; hypothetical protein 96292 4250962 Shewmr4_0083 Shewanella sp. MR-4 hypothetical protein YP_732221.1 96029 R 60480 CDS YP_732222.1 113968429 4250963 complement(96352..96816) 1 NC_008321.1 PFAM: thioesterase superfamily protein; KEGG: son:SO0080 hypothetical 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 96816 4250963 Shewmr4_0084 Shewanella sp. MR-4 thioesterase superfamily protein YP_732222.1 96352 R 60480 CDS YP_732223.1 113968430 4250964 96964..97317 1 NC_008321.1 PFAM: regulatory protein, MerR; KEGG: sdn:Sden_1798 regulatory protein, MerR; MerR family transcriptional regulator 97317 4250964 Shewmr4_0085 Shewanella sp. MR-4 MerR family transcriptional regulator YP_732223.1 96964 D 60480 CDS YP_732224.1 113968431 4250965 97389..97967 1 NC_008321.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sdn:Sden_1799 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 97967 4250965 Shewmr4_0086 Shewanella sp. MR-4 NAD(P)H dehydrogenase (quinone) YP_732224.1 97389 D 60480 CDS YP_732225.1 113968432 4250966 97983..98378 1 NC_008321.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: vpa:VP1790 hypothetical protein; glutathione-dependent formaldehyde-activating, GFA 98378 4250966 Shewmr4_0087 Shewanella sp. MR-4 glutathione-dependent formaldehyde-activating, GFA YP_732225.1 97983 D 60480 CDS YP_732226.1 113968433 4250967 98382..98738 1 NC_008321.1 PFAM: regulatory protein, MerR; KEGG: son:SO0082 transcriptional regulator, MerR family; MerR family transcriptional regulator 98738 4250967 Shewmr4_0088 Shewanella sp. MR-4 MerR family transcriptional regulator YP_732226.1 98382 D 60480 CDS YP_732227.1 113968434 4250968 98922..99308 1 NC_008321.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: son:SO0083 carboxymuconolactone decarboxylase family protein; carboxymuconolactone decarboxylase 99308 4250968 Shewmr4_0089 Shewanella sp. MR-4 carboxymuconolactone decarboxylase YP_732227.1 98922 D 60480 CDS YP_732228.1 113968435 4250969 complement(99360..100040) 1 NC_008321.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0084 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 100040 4250969 Shewmr4_0090 Shewanella sp. MR-4 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_732228.1 99360 R 60480 CDS YP_732229.1 113968436 4250970 100404..100838 1 NC_008321.1 KEGG: son:SO0085 hypothetical protein; hypothetical protein 100838 4250970 Shewmr4_0091 Shewanella sp. MR-4 hypothetical protein YP_732229.1 100404 D 60480 CDS YP_732230.1 113968437 4250971 100931..101944 1 NC_008321.1 KEGG: son:SO4661 hypothetical protein; hypothetical protein 101944 4250971 Shewmr4_0092 Shewanella sp. MR-4 hypothetical protein YP_732230.1 100931 D 60480 CDS YP_732231.1 113968438 4250972 102073..102804 1 NC_008321.1 KEGG: son:SO0087 hypothetical protein; hypothetical protein 102804 4250972 Shewmr4_0093 Shewanella sp. MR-4 hypothetical protein YP_732231.1 102073 D 60480 CDS YP_732232.1 113968439 4250973 complement(102895..104802) 1 NC_008321.1 PFAM: protein of unknown function DUF885; KEGG: cps:CPS_3202 putative lipoprotein; hypothetical protein 104802 4250973 Shewmr4_0094 Shewanella sp. MR-4 hypothetical protein YP_732232.1 102895 R 60480 CDS YP_732233.1 113968440 4250974 105072..105500 1 NC_008321.1 PFAM: regulatory protein, MarR; KEGG: hch:HCH_03311 transcriptional regulator; MarR family transcriptional regulator 105500 4250974 Shewmr4_0095 Shewanella sp. MR-4 MarR family transcriptional regulator YP_732233.1 105072 D 60480 CDS YP_732234.1 113968441 4250975 105536..106282 1 NC_008321.1 PFAM: Siderophore-interacting protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: rba:RB11489 vulnibactin utilization protein VIUB; FAD-binding 9, siderophore-interacting domain-containing protein 106282 4250975 Shewmr4_0096 Shewanella sp. MR-4 FAD-binding 9, siderophore-interacting domain-containing protein YP_732234.1 105536 D 60480 CDS YP_732235.1 113968442 4250976 complement(106986..108212) 1 NC_008321.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 108212 4250976 Shewmr4_0097 Shewanella sp. MR-4 imidazolonepropionase YP_732235.1 106986 R 60480 CDS YP_732236.1 113968443 4250977 108410..109117 1 NC_008321.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: son:SO0096 histidine utilization repressor; histidine utilization repressor 109117 4250977 Shewmr4_0098 Shewanella sp. MR-4 histidine utilization repressor YP_732236.1 108410 D 60480 CDS YP_732237.1 113968444 4250978 109241..110911 1 NC_008321.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 110911 4250978 Shewmr4_0099 Shewanella sp. MR-4 urocanate hydratase YP_732237.1 109241 D 60480 CDS YP_732238.1 113968445 4250979 110959..112500 1 NC_008321.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 112500 4250979 Shewmr4_0100 Shewanella sp. MR-4 histidine ammonia-lyase YP_732238.1 110959 D 60480 CDS YP_732239.1 113968446 4250980 113109..113690 1 NC_008321.1 KEGG: son:SO0098.1 formate dehydrogenase-N, nitrate-inducible, alpha subunit; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase Fe4S4 region; twin-arginine translocation pathway signal 113690 4250980 Shewmr4_0101 Shewanella sp. MR-4 twin-arginine translocation pathway signal YP_732239.1 113109 D 60480 CDS YP_732240.1 113968447 4250981 113739..116123 1 NC_008321.1 KEGG: son:SO0101 formate dehydrogenase, major subunit (formate dehydrogenase alpha subunit); TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 116123 4250981 Shewmr4_0102 Shewanella sp. MR-4 formate dehydrogenase subunit alpha YP_732240.1 113739 D 60480 CDS YP_732241.1 113968448 4250982 116126..117040 1 NC_008321.1 TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO0102 formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit); formate dehydrogenase subunit beta 117040 4250982 Shewmr4_0103 Shewanella sp. MR-4 formate dehydrogenase subunit beta YP_732241.1 116126 D 60480 CDS YP_732242.1 113968449 4250983 117037..117678 1 NC_008321.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO0103 formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit); formate dehydrogenase subunit gamma 117678 4250983 Shewmr4_0104 Shewanella sp. MR-4 formate dehydrogenase subunit gamma YP_732242.1 117037 D 60480 CDS YP_732243.1 113968450 4250984 117678..118586 1 NC_008321.1 TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: son:SO0104 fdhE protein; formate dehydrogenase accessory protein FdhE 118586 4250984 Shewmr4_0105 Shewanella sp. MR-4 formate dehydrogenase accessory protein FdhE YP_732243.1 117678 D 60480 CDS YP_732244.1 113968451 4250985 118635..120065 1 NC_008321.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 120065 4250985 Shewmr4_0106 Shewanella sp. MR-4 selenocysteine synthase YP_732244.1 118635 D 60480 CDS YP_732245.1 113968452 4250986 120062..122083 1 NC_008321.1 TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: son:SO0106 selenocysteine-specific translation elongation factor; selenocysteine-specific translation elongation factor SelB 122083 4250986 Shewmr4_0107 Shewanella sp. MR-4 selenocysteine-specific translation elongation factor SelB YP_732245.1 120062 D 60480 CDS YP_732246.1 113968453 4250987 122191..123027 1 NC_008321.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 123027 4250987 Shewmr4_0108 Shewanella sp. MR-4 formate dehydrogenase accessory protein YP_732246.1 122191 D 60480 CDS YP_732247.1 113968454 4250988 123153..124367 1 NC_008321.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: son:SO0108 hypothetical transporter component; putative inner membrane protein 124367 4250988 Shewmr4_0109 Shewanella sp. MR-4 putative inner membrane protein YP_732247.1 123153 D 60480 CDS YP_732248.1 113968455 4250989 124367..124600 1 NC_008321.1 PFAM: SirA family protein; KEGG: son:SO0109 hypothetical protein; hypothetical protein 124600 4250989 Shewmr4_0110 Shewanella sp. MR-4 hypothetical protein YP_732248.1 124367 D 60480 CDS YP_732249.1 113968456 4250990 complement(124662..126005) 1 NC_008321.1 PFAM: peptidase M48, Ste24p; KEGG: son:SO0110 hypothetical protease; peptidase M48, Ste24p 126005 4250990 Shewmr4_0111 Shewanella sp. MR-4 peptidase M48, Ste24p YP_732249.1 124662 R 60480 CDS YP_732250.1 113968457 4250991 complement(126122..126736) 1 NC_008321.1 KEGG: son:SO0111 hypothetical protein; hypothetical protein 126736 4250991 Shewmr4_0112 Shewanella sp. MR-4 hypothetical protein YP_732250.1 126122 R 60480 CDS YP_732251.1 113968458 4250992 127068..127454 1 NC_008321.1 KEGG: son:SO0112 hypothetical protein; hypothetical protein 127454 4250992 Shewmr4_0113 Shewanella sp. MR-4 hypothetical protein YP_732251.1 127068 D 60480 CDS YP_732252.1 113968459 4250993 complement(127306..127839) 1 NC_008321.1 KEGG: son:SO0113 hypothetical protein; hypothetical protein 127839 4250993 Shewmr4_0114 Shewanella sp. MR-4 hypothetical protein YP_732252.1 127306 R 60480 CDS YP_732253.1 113968460 4250994 complement(127963..128583) 1 NC_008321.1 KEGG: son:SO0114 hypothetical protein; hypothetical protein 128583 4250994 Shewmr4_0115 Shewanella sp. MR-4 hypothetical protein YP_732253.1 127963 R 60480 CDS YP_732254.1 113968461 4250995 128776..129159 1 NC_008321.1 PFAM: protein of unknown function DUF1090; KEGG: son:SO0119 hypothetical protein; hypothetical protein 129159 4250995 Shewmr4_0116 Shewanella sp. MR-4 hypothetical protein YP_732254.1 128776 D 60480 CDS YP_732255.1 113968462 4250996 129392..130660 1 NC_008321.1 PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0121 hypothetical small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 130660 4250996 Shewmr4_0117 Shewanella sp. MR-4 mechanosensitive ion channel protein MscS YP_732255.1 129392 D 60480 CDS YP_732256.1 113968463 4250997 complement(130657..131280) 1 NC_008321.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO0122 transporter, LysE family; lysine exporter protein LysE/YggA 131280 4250997 Shewmr4_0118 Shewanella sp. MR-4 lysine exporter protein LysE/YggA YP_732256.1 130657 R 60480 CDS YP_732257.1 113968464 4250998 complement(131306..131866) 1 NC_008321.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0123 acyltransferase family protein; phospholipid/glycerol acyltransferase 131866 4250998 Shewmr4_0119 Shewanella sp. MR-4 phospholipid/glycerol acyltransferase YP_732257.1 131306 R 60480 CDS YP_732258.1 113968465 4250999 131996..132445 1 NC_008321.1 KEGG: son:SO0125 hypothetical protein; hypothetical protein 132445 4250999 Shewmr4_0120 Shewanella sp. MR-4 hypothetical protein YP_732258.1 131996 D 60480 CDS YP_732259.1 113968466 4251000 complement(132469..133269) 1 NC_008321.1 PFAM: protein of unknown function DUF833; KEGG: son:SO0126 hypothetical protein; hypothetical protein 133269 4251000 Shewmr4_0121 Shewanella sp. MR-4 hypothetical protein YP_732259.1 132469 R 60480 CDS YP_732260.1 113968467 4251001 complement(133332..134990) 1 NC_008321.1 KEGG: son:SO0127 hypothetical protein; hypothetical protein 134990 4251001 Shewmr4_0122 Shewanella sp. MR-4 hypothetical protein YP_732260.1 133332 R 60480 CDS YP_732261.1 113968468 4251002 complement(135169..135768) 1 NC_008321.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO0129 conserved hypothetical protein TIGR00427; multiple antibiotic resistance (MarC)-like protein 135768 4251002 Shewmr4_0123 Shewanella sp. MR-4 multiple antibiotic resistance (MarC)-like protein YP_732261.1 135169 R 60480 CDS YP_732262.1 113968469 4251003 136100..138955 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcv:XCV2894 TonB-dependent outer membrane receptor; TonB-dependent receptor 138955 4251003 Shewmr4_0124 Shewanella sp. MR-4 TonB-dependent receptor YP_732262.1 136100 D 60480 CDS YP_732263.1 113968470 4250618 139356..142166 1 NC_008321.1 PFAM: PKD domain containing protein; peptidase M6, immune inhibitor A; KEGG: son:SO0130 protease, putative; peptidase M6, immune inhibitor A 142166 4250618 Shewmr4_0125 Shewanella sp. MR-4 peptidase M6, immune inhibitor A YP_732263.1 139356 D 60480 CDS YP_732264.1 113968471 4250619 complement(142227..142799) 1 NC_008321.1 PFAM: Chorismate lyase; KEGG: son:SO0131 putative chorismate--pyruvate lyase; chorismate lyase 142799 4250619 Shewmr4_0126 Shewanella sp. MR-4 chorismate lyase YP_732264.1 142227 R 60480 CDS YP_732265.1 113968472 4250620 142901..143311 1 NC_008321.1 PFAM: flagellar basal body-associated protein FliL; KEGG: son:SO0132 flagellar protein FliL, putative; flagellar basal body-associated protein FliL-like protein 143311 4250620 Shewmr4_0127 Shewanella sp. MR-4 flagellar basal body-associated protein FliL-like protein YP_732265.1 142901 D 60480 CDS YP_732266.1 113968473 4250621 143371..144465 1 NC_008321.1 PFAM: protein of unknown function DUF890; KEGG: son:SO0134 hypothetical protein; putative SAM-dependent methyltransferase 144465 4250621 Shewmr4_0128 Shewanella sp. MR-4 putative SAM-dependent methyltransferase YP_732266.1 143371 D 60480 CDS YP_732267.1 113968474 4250622 complement(144508..144804) 1 NC_008321.1 PFAM: protein of unknown function DUF333; KEGG: son:SO0135 hemolysin protein, putative; hypothetical protein 144804 4250622 Shewmr4_0129 Shewanella sp. MR-4 hypothetical protein YP_732267.1 144508 R 60480 CDS YP_732268.1 113968475 4250623 complement(144830..145492) 1 NC_008321.1 KEGG: son:SO0136 hypothetical protein; hypothetical protein 145492 4250623 Shewmr4_0130 Shewanella sp. MR-4 hypothetical protein YP_732268.1 144830 R 60480 CDS YP_732269.1 113968476 4250624 complement(145530..146291) 1 NC_008321.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 146291 4250624 Shewmr4_0131 Shewanella sp. MR-4 molybdopterin biosynthesis protein MoeB YP_732269.1 145530 R 60480 CDS YP_732270.1 113968477 4250625 complement(146303..147637) 1 NC_008321.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: son:SO0138 molybdopterin biosynthesis MoeA protein; molybdopterin molybdochelatase 147637 4250625 Shewmr4_0132 Shewanella sp. MR-4 molybdopterin molybdochelatase YP_732270.1 146303 R 60480 CDS YP_732271.1 113968478 4250626 147885..148421 1 NC_008321.1 PFAM: Ferritin, Dps family protein; KEGG: son:SO0139 ferritin; Ferritin, Dps family protein 148421 4250626 Shewmr4_0133 Shewanella sp. MR-4 Ferritin, Dps family protein YP_732271.1 147885 D 60480 CDS YP_732272.1 113968479 4250627 complement(148499..151732) 1 NC_008321.1 KEGG: son:SO0141 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 151732 4250627 Shewmr4_0134 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_732272.1 148499 R 60480 CDS YP_732273.1 113968480 4250628 complement(152094..152747) 1 NC_008321.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 152747 ribB 4250628 ribB Shewanella sp. MR-4 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_732273.1 152094 R 60480 CDS YP_732274.1 113968481 4250629 153435..155570 1 NC_008321.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO0144 protease II; oligopeptidase B 155570 4250629 Shewmr4_0136 Shewanella sp. MR-4 oligopeptidase B YP_732274.1 153435 D 60480 CDS YP_732275.1 113968482 4250630 155593..156012 1 NC_008321.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: son:SO0145 hypothetical URI domain endonuclease; excinuclease ABC subunit C 156012 4250630 Shewmr4_0137 Shewanella sp. MR-4 excinuclease ABC subunit C YP_732275.1 155593 D 60480 CDS YP_732276.1 113968483 4250631 complement(156392..156973) 1 NC_008321.1 hypothetical protein 156973 4250631 Shewmr4_0138 Shewanella sp. MR-4 hypothetical protein YP_732276.1 156392 R 60480 CDS YP_732277.1 113968484 4250632 complement(157532..158434) 1 NC_008321.1 PFAM: regulatory protein, LysR; KEGG: ilo:IL1611 transcriptional regulator, LysR family; LysR family transcriptional regulator 158434 4250632 Shewmr4_0139 Shewanella sp. MR-4 LysR family transcriptional regulator YP_732277.1 157532 R 60480 CDS YP_732278.1 113968485 4250633 158518..159207 1 NC_008321.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: ilo:IL1610 acyl carrier protein phosphodiesterase; (Acyl-carrier-protein) phosphodiesterase 159207 4250633 Shewmr4_0140 Shewanella sp. MR-4 (Acyl-carrier-protein) phosphodiesterase YP_732278.1 158518 D 60480 CDS YP_732279.1 113968486 4250634 159200..159673 1 NC_008321.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sco:SCO4974 deaminase; CMP/dCMP deaminase, zinc-binding 159673 4250634 Shewmr4_0141 Shewanella sp. MR-4 CMP/dCMP deaminase, zinc-binding YP_732279.1 159200 D 60480 CDS YP_732280.1 113968487 4250864 complement(159659..160162) 1 NC_008321.1 hypothetical protein 160162 4250864 Shewmr4_0142 Shewanella sp. MR-4 hypothetical protein YP_732280.1 159659 R 60480 CDS YP_732281.1 113968488 4250865 complement(160452..161228) 1 NC_008321.1 KEGG: son:SO0150 lipoprotein, putative; putative lipoprotein 161228 4250865 Shewmr4_0143 Shewanella sp. MR-4 putative lipoprotein YP_732281.1 160452 R 60480 CDS YP_732282.1 113968489 4250866 161499..162266 1 NC_008321.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0151 hypothetical SAM-dependent methyltransferase; type 12 methyltransferase 162266 4250866 Shewmr4_0144 Shewanella sp. MR-4 type 12 methyltransferase YP_732282.1 161499 D 60480 CDS YP_732283.1 113968490 4250867 complement(162291..164267) 1 NC_008321.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: son:SO0152 hypothetical carboxypeptidase; peptidase M14, carboxypeptidase A 164267 4250867 Shewmr4_0145 Shewanella sp. MR-4 peptidase M14, carboxypeptidase A YP_732283.1 162291 R 60480 CDS YP_732284.1 113968491 4250868 complement(164399..165517) 1 NC_008321.1 KEGG: son:SO0154 hypothetical protein; hypothetical protein 165517 4250868 Shewmr4_0146 Shewanella sp. MR-4 hypothetical protein YP_732284.1 164399 R 60480 CDS YP_732285.1 113968492 4250869 complement(165781..167010) 1 NC_008321.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO0157 proton/glutamate symporter; sodium:dicarboxylate symporter 167010 4250869 Shewmr4_0147 Shewanella sp. MR-4 sodium:dicarboxylate symporter YP_732285.1 165781 R 60480 CDS YP_732286.1 113968493 4250870 167411..167824 1 NC_008321.1 KEGG: son:SO0159 hypothetical protein; hypothetical protein 167824 4250870 Shewmr4_0148 Shewanella sp. MR-4 hypothetical protein YP_732286.1 167411 D 60480 CDS YP_732287.1 113968494 4250871 complement(167914..169653) 1 NC_008321.1 KEGG: ilo:IL0291 hypothetical protein; hypothetical protein 169653 4250871 Shewmr4_0149 Shewanella sp. MR-4 hypothetical protein YP_732287.1 167914 R 60480 CDS YP_732288.1 113968495 4250872 170060..171523 1 NC_008321.1 PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_04311 outer membrane protein and related peptidoglycan-associated (LipO)protein; OmpA/MotB domain-containing protein 171523 4250872 Shewmr4_0150 Shewanella sp. MR-4 OmpA/MotB domain-containing protein YP_732288.1 170060 D 60480 CDS YP_732289.1 113968496 4250873 complement(171643..173202) 1 NC_008321.1 PFAM: AbgT putative transporter; short chain fatty acid transporter; KEGG: son:SO0160 transporter, putative; transporter AbgT 173202 4250873 Shewmr4_0151 Shewanella sp. MR-4 transporter AbgT YP_732289.1 171643 R 60480 CDS YP_732290.1 113968497 4250874 complement(173450..174991) 1 NC_008321.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 174991 4250874 Shewmr4_0152 Shewanella sp. MR-4 phosphoenolpyruvate carboxykinase YP_732290.1 173450 R 60480 CDS YP_732291.1 113968498 4250875 complement(175193..176053) 1 NC_008321.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 176053 hslO 4250875 hslO Shewanella sp. MR-4 Hsp33-like chaperonin YP_732291.1 175193 R 60480 CDS YP_732292.1 113968499 4250876 complement(176090..176488) 1 NC_008321.1 PFAM: RNA-binding S4 domain protein; KEGG: son:SO0164 heat shock protein 15; RNA-binding S4 domain-containing protein 176488 4250876 Shewmr4_0154 Shewanella sp. MR-4 RNA-binding S4 domain-containing protein YP_732292.1 176090 R 60480 CDS YP_732293.1 113968500 4250877 176740..177666 1 NC_008321.1 TIGRFAM: general secretion pathway protein C; KEGG: son:SO0165 general secretion pathway protein C; general secretion pathway protein C 177666 4250877 Shewmr4_0155 Shewanella sp. MR-4 general secretion pathway protein C YP_732293.1 176740 D 60480 CDS YP_732294.1 113968501 4250878 177691..179793 1 NC_008321.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: son:SO0166 general secretion pathway protein D; general secretion pathway protein D 179793 4250878 Shewmr4_0156 Shewanella sp. MR-4 general secretion pathway protein D YP_732294.1 177691 D 60480 CDS YP_732295.1 113968502 4250879 179790..181355 1 NC_008321.1 KEGG: son:SO0167 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; type II secretion system protein E (GspE) 181355 4250879 Shewmr4_0157 Shewanella sp. MR-4 type II secretion system protein E (GspE) YP_732295.1 179790 D 60480 CDS YP_732296.1 113968503 4250880 181359..182582 1 NC_008321.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: son:SO0168 general secretion pathway protein F; general secretion pathway protein F 182582 4250880 Shewmr4_0158 Shewanella sp. MR-4 general secretion pathway protein F YP_732296.1 181359 D 60480 CDS YP_732297.1 113968504 4250881 182658..183092 1 NC_008321.1 TIGRFAM: general secretion pathway protein G; PFAM: methylation site containing protein; Bacterial type II secretion system protein G; KEGG: son:SO0169 general secretion pathway protein G; general secretion pathway protein G 183092 4250881 Shewmr4_0159 Shewanella sp. MR-4 general secretion pathway protein G YP_732297.1 182658 D 60480 CDS YP_732298.1 113968505 4250688 183154..183666 1 NC_008321.1 KEGG: son:SO0170 general secretion pathway protein H; general secretion pathway protein H 183666 4250688 Shewmr4_0160 Shewanella sp. MR-4 general secretion pathway protein H YP_732298.1 183154 D 60480 CDS YP_732299.1 113968506 4250689 183653..184021 1 NC_008321.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; methylation site containing protein; KEGG: son:SO0171 general secretion pathway protein I; general secretion pathway protein I 184021 4250689 Shewmr4_0161 Shewanella sp. MR-4 general secretion pathway protein I YP_732299.1 183653 D 60480 CDS YP_732300.1 113968507 4250690 184002..184763 1 NC_008321.1 TIGRFAM: general secretion pathway protein J; PFAM: methylation site containing protein; KEGG: son:SO0172 general secretion pathway protein J; general secretion pathway protein J 184763 4250690 Shewmr4_0162 Shewanella sp. MR-4 general secretion pathway protein J YP_732300.1 184002 D 60480 CDS YP_732301.1 113968508 4250691 184760..185758 1 NC_008321.1 PFAM: General secretion pathway protein K; KEGG: son:SO0173 general secretion pathway protein K; general secretion pathway protein K 185758 4250691 Shewmr4_0163 Shewanella sp. MR-4 general secretion pathway protein K YP_732301.1 184760 D 60480 CDS YP_732302.1 113968509 4250692 185807..186994 1 NC_008321.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: son:SO0174 general secretion pathway protein L; general secretion pathway protein L 186994 4250692 Shewmr4_0164 Shewanella sp. MR-4 general secretion pathway protein L YP_732302.1 185807 D 60480 CDS YP_732303.1 113968510 4250693 186996..187472 1 NC_008321.1 PFAM: General secretion pathway M protein; KEGG: son:SO0175 general secretion pathway protein M; general secretion pathway M protein 187472 4250693 Shewmr4_0165 Shewanella sp. MR-4 general secretion pathway M protein YP_732303.1 186996 D 60480 CDS YP_732304.1 113968511 4250694 187487..188248 1 NC_008321.1 PFAM: type II secretion system protein N; KEGG: son:SO0176 general secretion pathway protein N; type II secretion system protein N 188248 4250694 Shewmr4_0166 Shewanella sp. MR-4 type II secretion system protein N YP_732304.1 187487 D 60480 CDS YP_732305.1 113968512 4250695 complement(188313..188975) 1 NC_008321.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0177 HAD-superfamily hydrolase, subfamily IA, variant 3 protein family; HAD family hydrolase 188975 4250695 Shewmr4_0167 Shewanella sp. MR-4 HAD family hydrolase YP_732305.1 188313 R 60480 CDS YP_732306.1 113968513 4250696 189257..189664 1 NC_008321.1 KEGG: son:SO0189 fibronectin type III domain protein; hypothetical protein 189664 4250696 Shewmr4_0168 Shewanella sp. MR-4 hypothetical protein YP_732306.1 189257 D 60480 CDS YP_732307.1 113968514 4250697 189902..190453 1 NC_008321.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 190453 nudE 4250697 nudE Shewanella sp. MR-4 ADP-ribose diphosphatase NudE YP_732307.1 189902 D 60480 CDS YP_732308.1 113968515 4250698 190524..191336 1 NC_008321.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: son:SO0191 cysQ protein; 3'(2'),5'-bisphosphate nucleotidase 191336 4250698 Shewmr4_0170 Shewanella sp. MR-4 3'(2'),5'-bisphosphate nucleotidase YP_732308.1 190524 D 60480 CDS YP_732309.1 113968516 4250699 191343..191786 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0192 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 191786 4250699 Shewmr4_0171 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_732309.1 191343 D 60480 CDS YP_732310.1 113968517 4250700 192017..192628 1 NC_008321.1 PFAM: regulatory protein, TetR; KEGG: son:SO0193 transcriptional regulator, TetR family; TetR family transcriptional regulator 192628 4250700 Shewmr4_0172 Shewanella sp. MR-4 TetR family transcriptional regulator YP_732310.1 192017 D 60480 CDS YP_732311.1 113968518 4250701 192619..194481 1 NC_008321.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: son:SO0194 acyltransferase family protein; phospholipid/glycerol acyltransferase 194481 4250701 Shewmr4_0173 Shewanella sp. MR-4 phospholipid/glycerol acyltransferase YP_732311.1 192619 D 60480 CDS YP_732312.1 113968519 4250702 complement(194536..195690) 1 NC_008321.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 195690 4250702 Shewmr4_0174 Shewanella sp. MR-4 tRNA 2-selenouridine synthase YP_732312.1 194536 R 60480 CDS YP_732313.1 113968520 4250703 complement(195690..196748) 1 NC_008321.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 196748 4250703 Shewmr4_0175 Shewanella sp. MR-4 selenophosphate synthetase YP_732313.1 195690 R 60480 CDS YP_732314.1 113968521 4250704 complement(196845..197972) 1 NC_008321.1 PFAM: fatty acid desaturase; KEGG: son:SO0197 fatty acid desaturase, family 1; Delta-9 acyl-phospholipid desaturase 197972 4250704 Shewmr4_0176 Shewanella sp. MR-4 Delta-9 acyl-phospholipid desaturase YP_732314.1 196845 R 60480 CDS YP_732315.1 113968522 4250722 198095..198709 1 NC_008321.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 198709 4250722 Shewmr4_0177 Shewanella sp. MR-4 DNA-binding transcriptional repressor FabR YP_732315.1 198095 D 60480 CDS YP_732316.1 113968523 4250723 complement(198779..199876) 1 NC_008321.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 199876 4250723 Shewmr4_0178 Shewanella sp. MR-4 tRNA (uracil-5-)-methyltransferase YP_732316.1 198779 R 60480 CDS YP_732317.1 113968524 4250724 200018..200836 1 NC_008321.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 200836 4250724 Shewmr4_0179 Shewanella sp. MR-4 glutamate racemase YP_732317.1 200018 D 60480 CDS YP_732318.1 113968525 4250725 complement(200848..201312) 1 NC_008321.1 PFAM: RNP-1 like RNA-binding protein; KEGG: son:SO0208 RNA-binding protein; RNP-1 like RNA-binding protein 201312 4250725 Shewmr4_0180 Shewanella sp. MR-4 RNP-1 like RNA-binding protein YP_732318.1 200848 R 60480 CDS YP_732319.1 113968526 4250726 207421..208476 1 NC_008321.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 208476 murB 4250726 murB Shewanella sp. MR-4 UDP-N-acetylenolpyruvoylglucosamine reductase YP_732319.1 207421 D 60480 CDS YP_732320.1 113968527 4250727 208469..209428 1 NC_008321.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 209428 4250727 Shewmr4_0182 Shewanella sp. MR-4 biotin--protein ligase YP_732320.1 208469 D 60480 CDS YP_732321.1 113968528 4250728 complement(209430..210380) 1 NC_008321.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 210380 4250728 Shewmr4_0183 Shewanella sp. MR-4 pantothenate kinase YP_732321.1 209430 R 60480 CDS YP_732322.1 113968529 4250729 210493..210624 1 NC_008321.1 KEGG: son:SO0216 hypothetical protein; hypothetical protein 210624 4250729 Shewmr4_0184 Shewanella sp. MR-4 hypothetical protein YP_732322.1 210493 D 60480 CDS YP_732323.1 113968530 4250730 211092..212276 1 NC_008321.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 212276 4250730 Shewmr4_0185 Shewanella sp. MR-4 elongation factor Tu YP_732323.1 211092 D 60480 CDS YP_732324.1 113968531 4250731 212554..212925 1 NC_008321.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 212925 secE 4250731 secE Shewanella sp. MR-4 preprotein translocase subunit SecE YP_732324.1 212554 D 60480 CDS YP_732325.1 113968532 4250732 212935..213486 1 NC_008321.1 KEGG: son:SO0219 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; transcription antitermination protein nusG 213486 4250732 Shewmr4_0187 Shewanella sp. MR-4 transcription antitermination protein nusG YP_732325.1 212935 D 60480 CDS YP_732326.1 113968533 4250733 213615..214043 1 NC_008321.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 214043 rplK 4250733 rplK Shewanella sp. MR-4 50S ribosomal protein L11 YP_732326.1 213615 D 60480 CDS YP_732327.1 113968534 4250734 214048..214749 1 NC_008321.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 214749 rplA 4250734 rplA Shewanella sp. MR-4 50S ribosomal protein L1 YP_732327.1 214048 D 60480 CDS YP_732328.1 113968535 4250735 215015..215515 1 NC_008321.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 215515 rplJ 4250735 rplJ Shewanella sp. MR-4 50S ribosomal protein L10 YP_732328.1 215015 D 60480 CDS YP_732329.1 113968536 4250736 215570..215941 1 NC_008321.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 215941 rplL 4250736 rplL Shewanella sp. MR-4 50S ribosomal protein L7/L12 YP_732329.1 215570 D 60480 CDS YP_732330.1 113968537 4250737 216244..220221 1 NC_008321.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 220221 rpoB 4250737 rpoB Shewanella sp. MR-4 DNA-directed RNA polymerase subunit beta YP_732330.1 216244 D 60480 CDS YP_732331.1 113968538 4250738 220305..224522 1 NC_008321.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 224522 4250738 Shewmr4_0193 Shewanella sp. MR-4 DNA-directed RNA polymerase subunit beta' YP_732331.1 220305 D 60480 CDS YP_732332.1 113968539 4250739 224702..225076 1 NC_008321.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 225076 rpsL 4250739 rpsL Shewanella sp. MR-4 30S ribosomal protein S12 YP_732332.1 224702 D 60480 CDS YP_732333.1 113968540 4250917 225157..225627 1 NC_008321.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 225627 4250917 Shewmr4_0195 Shewanella sp. MR-4 30S ribosomal protein S7 YP_732333.1 225157 D 60480 CDS YP_732334.1 113968541 4250918 225706..227802 1 NC_008321.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 227802 4250918 Shewmr4_0196 Shewanella sp. MR-4 elongation factor G YP_732334.1 225706 D 60480 CDS YP_732335.1 113968542 4250919 227874..229058 1 NC_008321.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 229058 4250919 Shewmr4_0197 Shewanella sp. MR-4 elongation factor Tu YP_732335.1 227874 D 60480 CDS YP_732336.1 113968543 4250920 229397..229708 1 NC_008321.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 229708 rpsJ 4250920 rpsJ Shewanella sp. MR-4 30S ribosomal protein S10 YP_732336.1 229397 D 60480 CDS YP_732337.1 113968544 4250921 229736..230374 1 NC_008321.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 230374 rplC 4250921 rplC Shewanella sp. MR-4 50S ribosomal protein L3 YP_732337.1 229736 D 60480 CDS YP_732338.1 113968545 4250922 230392..230997 1 NC_008321.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 230997 rplD 4250922 rplD Shewanella sp. MR-4 50S ribosomal protein L4 YP_732338.1 230392 D 60480 CDS YP_732339.1 113968546 4250923 230994..231299 1 NC_008321.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 231299 rplW 4250923 rplW Shewanella sp. MR-4 50S ribosomal protein L23 YP_732339.1 230994 D 60480 CDS YP_732340.1 113968547 4250924 231316..232140 1 NC_008321.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 232140 rplB 4250924 rplB Shewanella sp. MR-4 50S ribosomal protein L2 YP_732340.1 231316 D 60480 CDS YP_732341.1 113968548 4250925 232155..232433 1 NC_008321.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 232433 rpsS 4250925 rpsS Shewanella sp. MR-4 30S ribosomal protein S19 YP_732341.1 232155 D 60480 CDS YP_732342.1 113968549 4250926 232449..232781 1 NC_008321.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 232781 rplV 4250926 rplV Shewanella sp. MR-4 50S ribosomal protein L22 YP_732342.1 232449 D 60480 CDS YP_732343.1 113968550 4250927 232791..233483 1 NC_008321.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 233483 rpsC 4250927 rpsC Shewanella sp. MR-4 30S ribosomal protein S3 YP_732343.1 232791 D 60480 CDS YP_732344.1 113968551 4250928 233495..233905 1 NC_008321.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 233905 rplP 4250928 rplP Shewanella sp. MR-4 50S ribosomal protein L16 YP_732344.1 233495 D 60480 CDS YP_732345.1 113968552 4250929 233905..234096 1 NC_008321.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 234096 4250929 Shewmr4_0207 Shewanella sp. MR-4 50S ribosomal protein L29 YP_732345.1 233905 D 60480 CDS YP_732346.1 113968553 4250930 234096..234344 1 NC_008321.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 234344 rpsQ 4250930 rpsQ Shewanella sp. MR-4 30S ribosomal protein S17 YP_732346.1 234096 D 60480 CDS YP_732347.1 113968554 4250931 234523..234891 1 NC_008321.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 234891 rplN 4250931 rplN Shewanella sp. MR-4 50S ribosomal protein L14 YP_732347.1 234523 D 60480 CDS YP_732348.1 113968555 4250932 234903..235217 1 NC_008321.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 235217 rplX 4250932 rplX Shewanella sp. MR-4 50S ribosomal protein L24 YP_732348.1 234903 D 60480 CDS YP_732349.1 113968556 4250933 235230..235769 1 NC_008321.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 235769 rplE 4250933 rplE Shewanella sp. MR-4 50S ribosomal protein L5 YP_732349.1 235230 D 60480 CDS YP_732350.1 113968557 4250670 235780..236085 1 NC_008321.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 236085 rpsN 4250670 rpsN Shewanella sp. MR-4 30S ribosomal protein S14 YP_732350.1 235780 D 60480 CDS YP_732351.1 113968558 4250671 236110..236502 1 NC_008321.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 236502 rpsH 4250671 rpsH Shewanella sp. MR-4 30S ribosomal protein S8 YP_732351.1 236110 D 60480 CDS YP_732352.1 113968559 4250672 236513..237046 1 NC_008321.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 237046 rplF 4250672 rplF Shewanella sp. MR-4 50S ribosomal protein L6 YP_732352.1 236513 D 60480 CDS YP_732353.1 113968560 4250673 237057..237407 1 NC_008321.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 237407 rplR 4250673 rplR Shewanella sp. MR-4 50S ribosomal protein L18 YP_732353.1 237057 D 60480 CDS YP_732354.1 113968561 4250674 237420..237923 1 NC_008321.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 237923 rpsE 4250674 rpsE Shewanella sp. MR-4 30S ribosomal protein S5 YP_732354.1 237420 D 60480 CDS YP_732355.1 113968562 4250675 237930..238112 1 NC_008321.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 238112 rpmD 4250675 rpmD Shewanella sp. MR-4 50S ribosomal protein L30 YP_732355.1 237930 D 60480 CDS YP_732356.1 113968563 4250676 238116..238550 1 NC_008321.1 late assembly protein; 50S ribosomal protein L15 238550 rplO 4250676 rplO Shewanella sp. MR-4 50S ribosomal protein L15 YP_732356.1 238116 D 60480 CDS YP_732357.1 113968564 4250677 238558..239898 1 NC_008321.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 239898 secY 4250677 secY Shewanella sp. MR-4 preprotein translocase subunit SecY YP_732357.1 238558 D 60480 CDS YP_732358.1 113968565 4250678 239920..240033 1 NC_008321.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 240033 rpmJ 4250678 rpmJ Shewanella sp. MR-4 50S ribosomal protein L36 YP_732358.1 239920 D 60480 CDS YP_732359.1 113968566 4250679 240149..240505 1 NC_008321.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 240505 rpsM 4250679 rpsM Shewanella sp. MR-4 30S ribosomal protein S13 YP_732359.1 240149 D 60480 CDS YP_732360.1 113968567 4250680 240520..240912 1 NC_008321.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 240912 4250680 Shewmr4_0222 Shewanella sp. MR-4 30S ribosomal protein S11 YP_732360.1 240520 D 60480 CDS YP_732361.1 113968568 4250681 240944..241564 1 NC_008321.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 241564 rpsD 4250681 rpsD Shewanella sp. MR-4 30S ribosomal protein S4 YP_732361.1 240944 D 60480 CDS YP_732362.1 113968569 4250682 241589..242578 1 NC_008321.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 242578 4250682 Shewmr4_0224 Shewanella sp. MR-4 DNA-directed RNA polymerase subunit alpha YP_732362.1 241589 D 60480 CDS YP_732363.1 113968570 4250683 242619..243014 1 NC_008321.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 243014 rplQ 4250683 rplQ Shewanella sp. MR-4 50S ribosomal protein L17 YP_732363.1 242619 D 60480 CDS YP_732364.1 113968571 4250684 complement(243079..244083) 1 NC_008321.1 KEGG: vch:VCA0212 hypothetical protein; hypothetical protein 244083 4250684 Shewmr4_0226 Shewanella sp. MR-4 hypothetical protein YP_732364.1 243079 R 60480 CDS YP_732365.1 113968572 4250685 complement(244196..244681) 1 NC_008321.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 244681 4250685 Shewmr4_0227 Shewanella sp. MR-4 cytochrome c-type biogenesis protein CcmE YP_732365.1 244196 R 60480 CDS YP_732366.1 113968573 4250686 complement(244678..244878) 1 NC_008321.1 PFAM: Heme exporter protein D (CcmD); KEGG: son:SO0260 heme exporter protein CcmD; Heme exporter protein D (CcmD) 244878 4250686 Shewmr4_0228 Shewanella sp. MR-4 Heme exporter protein D (CcmD) YP_732366.1 244678 R 60480 CDS YP_732367.1 113968574 4250687 complement(244878..245624) 1 NC_008321.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: son:SO0261 heme exporter protein CcmC; heme exporter protein CcmC 245624 4250687 Shewmr4_0229 Shewanella sp. MR-4 heme exporter protein CcmC YP_732367.1 244878 R 60480 CDS YP_732368.1 113968575 4251004 complement(245626..246312) 1 NC_008321.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: son:SO0262 heme exporter protein CcmB; heme exporter protein CcmB 246312 4251004 Shewmr4_0230 Shewanella sp. MR-4 heme exporter protein CcmB YP_732368.1 245626 R 60480 CDS YP_732369.1 113968576 4251005 complement(246324..246974) 1 NC_008321.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 246974 4251005 Shewmr4_0231 Shewanella sp. MR-4 cytochrome c biogenesis protein CcmA YP_732369.1 246324 R 60480 CDS YP_732370.1 113968577 4251006 247300..247599 1 NC_008321.1 PFAM: cytochrome c, class I; KEGG: son:SO0264 cytochrome c; cytochrome c, class I 247599 4251006 Shewmr4_0232 Shewanella sp. MR-4 cytochrome c, class I YP_732370.1 247300 D 60480 CDS YP_732371.1 113968578 4251007 complement(247689..248936) 1 NC_008321.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0265 cytochrome c-type biogenesis protein CcmH; TPR repeat-containing protein 248936 4251007 Shewmr4_0233 Shewanella sp. MR-4 TPR repeat-containing protein YP_732371.1 247689 R 60480 CDS YP_732372.1 113968579 4251008 249336..251315 1 NC_008321.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO0266 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 251315 4251008 Shewmr4_0234 Shewanella sp. MR-4 cytochrome c-type biogenesis protein CcmF YP_732372.1 249336 D 60480 CDS YP_732373.1 113968580 4251009 251327..251881 1 NC_008321.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: son:SO0267 thiol:disulfide interchange protein DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE 251881 4251009 Shewmr4_0235 Shewanella sp. MR-4 periplasmic protein thiol--disulfide oxidoreductase DsbE YP_732373.1 251327 D 60480 CDS YP_732374.1 113968581 4251010 251878..252357 1 NC_008321.1 PFAM: cytochrome C biogenesis protein; KEGG: son:SO0268 cytochrome c-type biogenesis protein CcmH; cytochrome C biogenesis protein 252357 4251010 Shewmr4_0236 Shewanella sp. MR-4 cytochrome C biogenesis protein YP_732374.1 251878 D 60480 CDS YP_732375.1 113968582 4251011 252354..252935 1 NC_008321.1 PFAM: Redoxin domain protein; KEGG: son:SO0269 thioredoxin, putative; redoxin domain-containing protein 252935 4251011 Shewmr4_0237 Shewanella sp. MR-4 redoxin domain-containing protein YP_732375.1 252354 D 60480 CDS YP_732376.1 113968583 4251012 258855..259367 1 NC_008321.1 KEGG: son:SO4492 hypothetical protein; hypothetical protein 259367 4251012 Shewmr4_0238 Shewanella sp. MR-4 hypothetical protein YP_732376.1 258855 D 60480 CDS YP_732377.1 113968584 4251013 complement(259406..260722) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: son:SO4488 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 260722 4251013 Shewmr4_0239 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_732377.1 259406 R 60480 CDS YP_732378.1 113968585 4251014 complement(260725..261387) 1 NC_008321.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4487 DNA-binding response regulator; two component transcriptional regulator 261387 4251014 Shewmr4_0240 Shewanella sp. MR-4 two component transcriptional regulator YP_732378.1 260725 R 60480 CDS YP_732379.1 113968586 4251015 complement(261387..261653) 1 NC_008321.1 PFAM: Propeptide, PepSY amd peptidase M4; KEGG: son:SO4486 hypothetical protein; peptidase 261653 4251015 Shewmr4_0241 Shewanella sp. MR-4 peptidase YP_732379.1 261387 R 60480 CDS YP_732380.1 113968587 4251016 complement(261646..262209) 1 NC_008321.1 KEGG: son:SO4485 diheme cytochrome c; diheme cytochrome c 262209 4251016 Shewmr4_0242 Shewanella sp. MR-4 diheme cytochrome c YP_732380.1 261646 R 60480 CDS YP_732381.1 113968588 4251017 complement(262257..262697) 1 NC_008321.1 KEGG: son:SO4484 cytochrome c-type protein Shp; cytochrome c-type protein Shp 262697 4251017 Shewmr4_0243 Shewanella sp. MR-4 cytochrome c-type protein Shp YP_732381.1 262257 R 60480 CDS YP_732382.1 113968589 4251018 complement(262731..263327) 1 NC_008321.1 PFAM: cytochrome B561; KEGG: son:SO4483 cytochrome b, putative; cytochrome B561 263327 4251018 Shewmr4_0244 Shewanella sp. MR-4 cytochrome B561 YP_732382.1 262731 R 60480 CDS YP_732383.1 113968590 4251019 263535..263957 1 NC_008321.1 KEGG: son:SO4482 hypothetical protein; hypothetical protein 263957 4251019 Shewmr4_0245 Shewanella sp. MR-4 hypothetical protein YP_732383.1 263535 D 60480 CDS YP_732384.1 113968591 4251020 263986..264474 1 NC_008321.1 KEGG: son:SO4481 hypothetical protein; hypothetical protein 264474 4251020 Shewmr4_0246 Shewanella sp. MR-4 hypothetical protein YP_732384.1 263986 D 60480 CDS YP_732385.1 113968592 4250811 complement(264471..265388) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mfa:Mfla_2592 transcriptional regulator, LysR family; LysR family transcriptional regulator 265388 4250811 Shewmr4_0247 Shewanella sp. MR-4 LysR family transcriptional regulator YP_732385.1 264471 R 60480 CDS YP_732386.1 113968593 4250812 265526..266287 1 NC_008321.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hch:HCH_02025 short-chain alcohol dehydrogenase-like protein; short-chain dehydrogenase/reductase SDR 266287 4250812 Shewmr4_0248 Shewanella sp. MR-4 short-chain dehydrogenase/reductase SDR YP_732386.1 265526 D 60480 CDS YP_732387.1 113968594 4250813 complement(266356..267876) 1 NC_008321.1 PFAM: aldehyde dehydrogenase; KEGG: son:SO4480 aldehyde dehydrogenase; aldehyde dehydrogenase 267876 4250813 Shewmr4_0249 Shewanella sp. MR-4 aldehyde dehydrogenase YP_732387.1 266356 R 60480 CDS YP_732388.1 113968595 4250814 268246..270105 1 NC_008321.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: son:SO4479 sigma-54 dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator 270105 4250814 Shewmr4_0250 Shewanella sp. MR-4 Fis family GAF modulated sigma54 specific transcriptional regulator YP_732388.1 268246 D 60480 CDS YP_732389.1 113968596 4250815 complement(270164..271513) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4478 sensor protein CpxA; periplasmic sensor signal transduction histidine kinase 271513 4250815 Shewmr4_0251 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_732389.1 270164 R 60480 CDS YP_732390.1 113968597 4250816 complement(271528..272214) 1 NC_008321.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4477 transcriptional regulatory protein CpxR; two component transcriptional regulator 272214 4250816 Shewmr4_0252 Shewanella sp. MR-4 two component transcriptional regulator YP_732390.1 271528 R 60480 CDS YP_732391.1 113968598 4250817 272561..273052 1 NC_008321.1 PFAM: protein of unknown function, Spy-related; KEGG: son:SO4476 spheroplast protein y precursor, putative; hypothetical protein 273052 4250817 Shewmr4_0253 Shewanella sp. MR-4 hypothetical protein YP_732391.1 272561 D 60480 CDS YP_732392.1 113968599 4250818 273103..273996 1 NC_008321.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: son:SO4475 cation efflux family protein; cation diffusion facilitator family transporter 273996 4250818 Shewmr4_0254 Shewanella sp. MR-4 cation diffusion facilitator family transporter YP_732392.1 273103 D 60480 CDS YP_732393.1 113968600 4250819 274042..274452 1 NC_008321.1 KEGG: son:SO4474 hypothetical protein; hypothetical protein 274452 4250819 Shewmr4_0255 Shewanella sp. MR-4 hypothetical protein YP_732393.1 274042 D 60480 CDS YP_732394.1 113968601 4250820 274640..275197 1 NC_008321.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: son:SO4473 outer membrane protein, putative; OmpA domain-containing protein 275197 4250820 Shewmr4_0256 Shewanella sp. MR-4 OmpA domain-containing protein YP_732394.1 274640 D 60480 CDS YP_732395.1 113968602 4250821 complement(275266..276681) 1 NC_008321.1 KEGG: son:SO4472 nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator, NtrC, Fis family 276681 4250821 Shewmr4_0257 Shewanella sp. MR-4 nitrogen metabolism transcriptional regulator, NtrC, Fis family YP_732395.1 275266 R 60480 CDS YP_732396.1 113968603 4250822 complement(276719..277765) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: son:SO4471 nitrogen regulation protein; signal transduction histidine kinase, nitrogen specific, NtrB 277765 4250822 Shewmr4_0258 Shewanella sp. MR-4 signal transduction histidine kinase, nitrogen specific, NtrB YP_732396.1 276719 R 60480 CDS YP_732397.1 113968604 4250823 complement(277887..278420) 1 NC_008321.1 KEGG: son:SO4470 hypothetical protein; hypothetical protein 278420 4250823 Shewmr4_0259 Shewanella sp. MR-4 hypothetical protein YP_732397.1 277887 R 60480 CDS YP_732398.1 113968605 4250824 complement(278694..279851) 1 NC_008321.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO4469 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 279851 4250824 Shewmr4_0260 Shewanella sp. MR-4 iron-containing alcohol dehydrogenase YP_732398.1 278694 R 60480 CDS YP_732399.1 113968606 4250825 complement(279996..280592) 1 NC_008321.1 PFAM: regulatory protein, TetR; KEGG: son:SO4468 transcriptional regulator, TetR family; TetR family transcriptional regulator 280592 4250825 Shewmr4_0261 Shewanella sp. MR-4 TetR family transcriptional regulator YP_732399.1 279996 R 60480 CDS YP_732400.1 113968607 4250826 complement(280708..281019) 1 NC_008321.1 PFAM: protein of unknown function DUF1255; KEGG: son:SO4467 hypothetical protein; hypothetical protein 281019 4250826 Shewmr4_0262 Shewanella sp. MR-4 hypothetical protein YP_732400.1 280708 R 60480 CDS YP_732401.1 113968608 4250827 complement(283422..285521) 1 NC_008321.1 PFAM: protein of unknown function DUF323; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4465 hypothetical protein; hypothetical protein 285521 4250827 Shewmr4_0264 Shewanella sp. MR-4 hypothetical protein YP_732401.1 283422 R 60480 CDS YP_732402.1 113968609 4250828 285868..286257 1 NC_008321.1 KEGG: son:SO4462 hypothetical protein; hypothetical protein 286257 4250828 Shewmr4_0265 Shewanella sp. MR-4 hypothetical protein YP_732402.1 285868 D 60480 CDS YP_732403.1 113968610 4251162 complement(286266..286463) 1 NC_008321.1 KEGG: son:SO4461 hypothetical protein; hypothetical protein 286463 4251162 Shewmr4_0266 Shewanella sp. MR-4 hypothetical protein YP_732403.1 286266 R 60480 CDS YP_732404.1 113968611 4251163 286831..287670 1 NC_008321.1 PFAM: PfkB domain protein; KEGG: son:SO4458 carbohydrate kinase, PfkB family; ribokinase-like domain-containing protein 287670 4251163 Shewmr4_0267 Shewanella sp. MR-4 ribokinase-like domain-containing protein YP_732404.1 286831 D 60480 CDS YP_732405.1 113968612 4251164 287979..289436 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4457 GGDEF domain protein; diguanylate cyclase 289436 4251164 Shewmr4_0268 Shewanella sp. MR-4 diguanylate cyclase YP_732405.1 287979 D 60480 CDS YP_732406.1 113968613 4251165 289540..290235 1 NC_008321.1 PFAM: 3-alpha; MOSC domain containing protein; KEGG: son:SO4456 hypothetical protein; MOSC domain-containing protein 290235 4251165 Shewmr4_0269 Shewanella sp. MR-4 MOSC domain-containing protein YP_732406.1 289540 D 60480 CDS YP_732407.1 113968614 4251166 290272..290628 1 NC_008321.1 KEGG: son:SO4455 hypothetical protein; hypothetical protein 290628 4251166 Shewmr4_0270 Shewanella sp. MR-4 hypothetical protein YP_732407.1 290272 D 60480 CDS YP_732408.1 113968615 4251167 complement(290711..292627) 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4454 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 292627 4251167 Shewmr4_0271 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_732408.1 290711 R 60480 CDS YP_732409.1 113968616 4251168 complement(292930..294579) 1 NC_008321.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: son:SO4453 electron transfer flavoprotein-ubiquinone oxidoreductase, putative; electron-transferring-flavoprotein dehydrogenase 294579 4251168 Shewmr4_0272 Shewanella sp. MR-4 electron-transferring-flavoprotein dehydrogenase YP_732409.1 292930 R 60480 CDS YP_732410.1 113968617 4251169 294920..295933 1 NC_008321.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 295933 moaA 4251169 moaA Shewanella sp. MR-4 molybdenum cofactor biosynthesis protein A YP_732410.1 294920 D 60480 CDS YP_732411.1 113968618 4251170 296046..296525 1 NC_008321.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 296525 moaC 4251170 moaC Shewanella sp. MR-4 molybdenum cofactor biosynthesis protein MoaC YP_732411.1 296046 D 60480 CDS YP_732412.1 113968619 4251171 296545..296796 1 NC_008321.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: son:SO4450 molybdenum cofactor biosynthesis protein D; molybdopterin synthase subunit MoaD 296796 4251171 Shewmr4_0275 Shewanella sp. MR-4 molybdopterin synthase subunit MoaD YP_732412.1 296545 D 60480 CDS YP_732413.1 113968620 4251172 296798..297265 1 NC_008321.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: son:SO4449 molybdenum cofactor biosynthesis protein E; molybdopterin synthase subunit MoaE 297265 4251172 Shewmr4_0276 Shewanella sp. MR-4 molybdopterin synthase subunit MoaE YP_732413.1 296798 D 60480 CDS YP_732414.1 113968621 4251173 297308..298111 1 NC_008321.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: son:SO4448 molybdenum ABC transporter, periplasmic molybdenum-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 298111 4251173 Shewmr4_0277 Shewanella sp. MR-4 molybdenum ABC transporter periplasmic molybdate-binding protein YP_732414.1 297308 D 60480 CDS YP_732415.1 113968622 4251174 298120..298800 1 NC_008321.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4447 molybdenum ABC transporter, permease protein; molybdate ABC transporter inner membrane subunit 298800 4251174 Shewmr4_0278 Shewanella sp. MR-4 molybdate ABC transporter inner membrane subunit YP_732415.1 298120 D 60480 CDS YP_732416.1 113968623 4251175 298781..299884 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4446 molybdenum ABC transporter, ATP-binding protein; ABC transporter-like protein 299884 4251175 Shewmr4_0279 Shewanella sp. MR-4 ABC transporter-like protein YP_732416.1 298781 D 60480 CDS YP_732417.1 113968624 4251176 300458..300979 1 NC_008321.1 KEGG: son:SO4429 hypothetical protein; hypothetical protein 300979 4251176 Shewmr4_0280 Shewanella sp. MR-4 hypothetical protein YP_732417.1 300458 D 60480 CDS YP_732418.1 113968625 4251177 301028..301705 1 NC_008321.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4428 DNA-binding response regulator; two component transcriptional regulator 301705 4251177 Shewmr4_0281 Shewanella sp. MR-4 two component transcriptional regulator YP_732418.1 301028 D 60480 CDS YP_732419.1 113968626 4251178 301776..303011 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4427 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 303011 4251178 Shewmr4_0282 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_732419.1 301776 D 60480 CDS YP_732420.1 113968627 4250829 303044..303730 1 NC_008321.1 TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: sdn:Sden_0111 pseudouridine synthase RluA-like protein; pseudouridine synthase Rlu family protein 303730 4250829 Shewmr4_0283 Shewanella sp. MR-4 pseudouridine synthase Rlu family protein YP_732420.1 303044 D 60480 CDS YP_732421.1 113968628 4250830 complement(303727..304902) 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4425 GGDEF family protein; diguanylate cyclase 304902 4250830 Shewmr4_0284 Shewanella sp. MR-4 diguanylate cyclase YP_732421.1 303727 R 60480 CDS YP_732422.1 113968629 4250831 305092..305259 1 NC_008321.1 PFAM: protein of unknown function UPF0057; KEGG: son:SO4423 hypothetical protein; hypothetical protein 305259 4250831 Shewmr4_0285 Shewanella sp. MR-4 hypothetical protein YP_732422.1 305092 D 60480 CDS YP_732423.1 113968630 4250832 complement(305325..307496) 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4423.1 hypothetical ferric aerobactin receptor; TonB-dependent receptor 307496 4250832 Shewmr4_0286 Shewanella sp. MR-4 TonB-dependent receptor YP_732423.1 305325 R 60480 CDS YP_732424.1 113968631 4250833 307803..307994 1 NC_008321.1 KEGG: son:SO4421 hypothetical protein; hypothetical protein 307994 4250833 Shewmr4_0287 Shewanella sp. MR-4 hypothetical protein YP_732424.1 307803 D 60480 CDS YP_732425.1 113968632 4250834 complement(308007..308519) 1 NC_008321.1 PFAM: peptidase M23B; KEGG: son:SO4420 peptidase, M23/M37 family; peptidase M23B 308519 4250834 Shewmr4_0288 Shewanella sp. MR-4 peptidase M23B YP_732425.1 308007 R 60480 CDS YP_732426.1 113968633 4250835 complement(308541..309119) 1 NC_008321.1 KEGG: son:SO4419 hypothetical protein; hypothetical protein 309119 4250835 Shewmr4_0289 Shewanella sp. MR-4 hypothetical protein YP_732426.1 308541 R 60480 CDS YP_732427.1 113968634 4250836 complement(309194..309847) 1 NC_008321.1 PFAM: CHAP domain containing protein; KEGG: son:SO4418 trypanothione synthetase domain protein; CHAP domain-containing protein 309847 4250836 Shewmr4_0290 Shewanella sp. MR-4 CHAP domain-containing protein YP_732427.1 309194 R 60480 CDS YP_732428.1 113968635 4250837 complement(310037..311107) 1 NC_008321.1 KEGG: rso:RS05497 hypothetical protein; hypothetical protein 311107 4250837 Shewmr4_0291 Shewanella sp. MR-4 hypothetical protein YP_732428.1 310037 R 60480 CDS YP_732429.1 113968636 4250838 311261..311872 1 NC_008321.1 PFAM: regulatory protein, TetR; KEGG: hch:HCH_03535 transcriptional regulator; TetR family transcriptional regulator 311872 4250838 Shewmr4_0292 Shewanella sp. MR-4 TetR family transcriptional regulator YP_732429.1 311261 D 60480 CDS YP_732430.1 113968637 4250839 complement(311951..313294) 1 NC_008321.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 313294 4250839 Shewmr4_0293 Shewanella sp. MR-4 anaerobic C4-dicarboxylate transporter YP_732430.1 311951 R 60480 CDS YP_732431.1 113968638 4250840 313578..314756 1 NC_008321.1 KEGG: son:SO4414 hypothetical protein; hypothetical protein 314756 4250840 Shewmr4_0294 Shewanella sp. MR-4 hypothetical protein YP_732431.1 313578 D 60480 CDS YP_732432.1 113968639 4250841 314761..315885 1 NC_008321.1 PFAM: aminotransferase, class V; KEGG: son:SO4413 hypothetical kynureninase; aminotransferase, class V 315885 4250841 Shewmr4_0295 Shewanella sp. MR-4 aminotransferase, class V YP_732432.1 314761 D 60480 CDS YP_732433.1 113968640 4250842 complement(315958..316281) 1 NC_008321.1 KEGG: son:SO4412 hypothetical protein; hypothetical protein 316281 4250842 Shewmr4_0296 Shewanella sp. MR-4 hypothetical protein YP_732433.1 315958 R 60480 CDS YP_732434.1 113968641 4250843 complement(316466..317713) 1 NC_008321.1 PFAM: sodium:dicarboxylate symporter; KEGG: sdn:Sden_3453 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 317713 4250843 Shewmr4_0297 Shewanella sp. MR-4 sodium:dicarboxylate symporter YP_732434.1 316466 R 60480 CDS YP_732435.1 113968642 4250844 complement(318669..319472) 1 NC_008321.1 PFAM: regulatory protein, TetR; KEGG: son:SO1415 transcriptional regulator, TetR family; TetR family transcriptional regulator 319472 4250844 Shewmr4_0298 Shewanella sp. MR-4 TetR family transcriptional regulator YP_732435.1 318669 R 60480 CDS YP_732436.1 113968643 4250845 319808..321328 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: son:SO1414 flavocytochrome c flavin subunit, putative; flavocytochrome c 321328 4250845 Shewmr4_0299 Shewanella sp. MR-4 flavocytochrome c YP_732436.1 319808 D 60480 CDS YP_732437.1 113968644 4250846 321332..321703 1 NC_008321.1 KEGG: son:SO1413 tetraheme cytochrome c, putative; tetraheme cytochrome c 321703 4250846 Shewmr4_0300 Shewanella sp. MR-4 tetraheme cytochrome c YP_732437.1 321332 D 60480 CDS YP_732438.1 113968645 4251915 321742..322875 1 NC_008321.1 KEGG: son:SO1412 hypothetical protein; hypothetical protein 322875 4251915 Shewmr4_0301 Shewanella sp. MR-4 hypothetical protein YP_732438.1 321742 D 60480 CDS YP_732439.1 113968646 4251916 322984..324066 1 NC_008321.1 KEGG: son:SO1411 hypothetical protein; hypothetical protein 324066 4251916 Shewmr4_0302 Shewanella sp. MR-4 hypothetical protein YP_732439.1 322984 D 60480 CDS YP_732440.1 113968647 4251917 324237..324980 1 NC_008321.1 KEGG: son:SO1410 hypothetical protein; hypothetical protein 324980 4251917 Shewmr4_0303 Shewanella sp. MR-4 hypothetical protein YP_732440.1 324237 D 60480 CDS YP_732441.1 113968648 4251918 complement(325211..327448) 1 NC_008321.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eca:ECA0876 TonB-dependent ferric aerobactin receptor; TonB-dependent siderophore receptor 327448 4251918 Shewmr4_0304 Shewanella sp. MR-4 TonB-dependent siderophore receptor YP_732441.1 325211 R 60480 CDS YP_732442.1 113968649 4251919 complement(327853..329262) 1 NC_008321.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 329262 glnA 4251919 glnA Shewanella sp. MR-4 glutamine synthetase YP_732442.1 327853 R 60480 CDS YP_732443.1 113968650 4251920 330262..332073 1 NC_008321.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: son:SO4408 virulence regulator BipA; GTP-binding protein TypA 332073 4251920 Shewmr4_0306 Shewanella sp. MR-4 GTP-binding protein TypA YP_732443.1 330262 D 60480 CDS YP_732444.1 113968651 4251921 complement(332448..333455) 1 NC_008321.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: vpa:VPA0381 putative transcription regulator; AraC family transcriptional regulator 333455 4251921 Shewmr4_0307 Shewanella sp. MR-4 AraC family transcriptional regulator YP_732444.1 332448 R 60480 CDS YP_732445.1 113968652 4251922 333593..334354 1 NC_008321.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vpa:VPA0382 putative sorbitol-6-phosphate 2-dehydrogenase; short-chain dehydrogenase/reductase SDR 334354 4251922 Shewmr4_0308 Shewanella sp. MR-4 short-chain dehydrogenase/reductase SDR YP_732445.1 333593 D 60480 CDS YP_732446.1 113968653 4251923 334402..334908 1 NC_008321.1 KEGG: vpa:VPA0383 hypothetical protein; hypothetical protein 334908 4251923 Shewmr4_0309 Shewanella sp. MR-4 hypothetical protein YP_732446.1 334402 D 60480 CDS YP_732447.1 113968654 4251924 334919..335995 1 NC_008321.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: vpa:VPA0384 hypothetical protein; alcohol dehydrogenase 335995 4251924 Shewmr4_0310 Shewanella sp. MR-4 alcohol dehydrogenase YP_732447.1 334919 D 60480 CDS YP_732448.1 113968655 4251925 336349..338535 1 NC_008321.1 KEGG: son:SO4405 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 338535 4251925 Shewmr4_0311 Shewanella sp. MR-4 catalase/peroxidase HPI YP_732448.1 336349 D 60480 CDS YP_732449.1 113968656 4251926 complement(338620..339867) 1 NC_008321.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4404 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 339867 4251926 Shewmr4_0312 Shewanella sp. MR-4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_732449.1 338620 R 60480 CDS YP_732450.1 113968657 4251927 complement(340043..341776) 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, transmembrane region; KEGG: tdn:Tmden_1328 diguanylate cyclase (GGDEF domain); diguanylate cyclase 341776 4251927 Shewmr4_0313 Shewanella sp. MR-4 diguanylate cyclase YP_732450.1 340043 R 60480 CDS YP_732451.1 113968658 4251928 complement(342020..342673) 1 NC_008321.1 KEGG: son:SO4403 hypothetical protein; hypothetical protein 342673 4251928 Shewmr4_0314 Shewanella sp. MR-4 hypothetical protein YP_732451.1 342020 R 60480 CDS YP_732452.1 113968659 4251929 complement(342703..342924) 1 NC_008321.1 KEGG: son:SO4402 hypothetical protein; hypothetical protein 342924 4251929 Shewmr4_0315 Shewanella sp. MR-4 hypothetical protein YP_732452.1 342703 R 60480 CDS YP_732453.1 113968660 4251930 343006..344019 1 NC_008321.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 344019 rbn 4251930 rbn Shewanella sp. MR-4 ribonuclease BN YP_732453.1 343006 D 60480 CDS YP_732454.1 113968661 4251931 344065..345021 1 NC_008321.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO4400 proline iminopeptidase, putative; prolyl aminopeptidase 345021 4251931 Shewmr4_0317 Shewanella sp. MR-4 prolyl aminopeptidase YP_732454.1 344065 D 60480 CDS YP_732455.1 113968662 4251477 345018..345620 1 NC_008321.1 KEGG: son:SO4399 hypothetical protein; hypothetical protein 345620 4251477 Shewmr4_0318 Shewanella sp. MR-4 hypothetical protein YP_732455.1 345018 D 60480 CDS YP_732456.1 113968663 4251478 345636..346073 1 NC_008321.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 346073 4251478 Shewmr4_0319 Shewanella sp. MR-4 D-tyrosyl-tRNA(Tyr) deacylase YP_732456.1 345636 D 60480 CDS YP_732457.1 113968664 4251479 346113..346550 1 NC_008321.1 TIGRFAM: thioesterase domain, putative; KEGG: son:SO4397 hypothetical acetyltransferase; thioesterase domain-containing protein 346550 4251479 Shewmr4_0320 Shewanella sp. MR-4 thioesterase domain-containing protein YP_732457.1 346113 D 60480 CDS YP_732458.1 113968665 4251480 346684..347280 1 NC_008321.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 347280 4251480 Shewmr4_0321 Shewanella sp. MR-4 azoreductase YP_732458.1 346684 D 60480 CDS YP_732459.1 113968666 4251481 complement(347341..347523) 1 NC_008321.1 KEGG: son:SO4395 hypothetical protein; hypothetical protein 347523 4251481 Shewmr4_0322 Shewanella sp. MR-4 hypothetical protein YP_732459.1 347341 R 60480 CDS YP_732460.1 113968667 4251482 complement(347543..347866) 1 NC_008321.1 PFAM: Rhodanese domain protein; KEGG: son:SO4394 phage shock protein E; rhodanese domain-containing protein 347866 4251482 Shewmr4_0323 Shewanella sp. MR-4 rhodanese domain-containing protein YP_732460.1 347543 R 60480 CDS YP_732461.1 113968668 4251483 complement(347962..348537) 1 NC_008321.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: lpp:plpp0134 hypothetical protein; XRE family transcriptional regulator 348537 4251483 Shewmr4_0324 Shewanella sp. MR-4 XRE family transcriptional regulator YP_732461.1 347962 R 60480 CDS YP_732462.1 113968669 4251484 348672..349832 1 NC_008321.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: xcv:XCV4391 benzoate permease; benzoate transporter 349832 4251484 Shewmr4_0325 Shewanella sp. MR-4 benzoate transporter YP_732462.1 348672 D 60480 CDS YP_732463.1 113968670 4251485 complement(349869..351260) 1 NC_008321.1 PFAM: chemotaxis sensory transducer; KEGG: psp:PSPPH_5044 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 351260 4251485 Shewmr4_0326 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_732463.1 349869 R 60480 CDS YP_732464.1 113968671 4251486 complement(351382..351978) 1 NC_008321.1 PFAM: electron transport protein SCO1/SenC; KEGG: pae:PA0114 hypothetical protein; electron transport protein SCO1/SenC 351978 4251486 Shewmr4_0327 Shewanella sp. MR-4 electron transport protein SCO1/SenC YP_732464.1 351382 R 60480 CDS YP_732465.1 113968672 4251487 complement(352216..352671) 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO4393 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 352671 4251487 Shewmr4_0328 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_732465.1 352216 R 60480 CDS YP_732466.1 113968673 4251488 complement(352957..353388) 1 NC_008321.1 KEGG: plu:plu0332 hypothetical protein; hypothetical protein 353388 4251488 Shewmr4_0329 Shewanella sp. MR-4 hypothetical protein YP_732466.1 352957 R 60480 CDS YP_732467.1 113968674 4251489 complement(353443..353913) 1 NC_008321.1 hypothetical protein 353913 4251489 Shewmr4_0330 Shewanella sp. MR-4 hypothetical protein YP_732467.1 353443 R 60480 CDS YP_732468.1 113968675 4251490 complement(353988..354872) 1 NC_008321.1 KEGG: xac:XAC2266 hypothetical protein; hypothetical protein 354872 4251490 Shewmr4_0331 Shewanella sp. MR-4 hypothetical protein YP_732468.1 353988 R 60480 CDS YP_732469.1 113968676 4251491 complement(355301..355600) 1 NC_008321.1 PFAM: plasmid stabilization system; KEGG: vch:VCA0385 hypothetical protein; plasmid stabilization system protein 355600 4251491 Shewmr4_0332 Shewanella sp. MR-4 plasmid stabilization system protein YP_732469.1 355301 R 60480 CDS YP_732470.1 113968677 4251492 complement(355609..355851) 1 NC_008321.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: vvy:VV1866 hypothetical protein; prevent-host-death family protein 355851 4251492 Shewmr4_0333 Shewanella sp. MR-4 prevent-host-death family protein YP_732470.1 355609 R 60480 CDS YP_732471.1 113968678 4251493 complement(356036..356779) 1 NC_008321.1 KEGG: son:SO4384 hypothetical protein; hypothetical protein 356779 4251493 Shewmr4_0334 Shewanella sp. MR-4 hypothetical protein YP_732471.1 356036 R 60480 CDS YP_732472.1 113968679 4251494 complement(356790..358043) 1 NC_008321.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 358043 4251494 Shewmr4_0335 Shewanella sp. MR-4 3-oxoacyl-(acyl carrier protein) synthase II YP_732472.1 356790 R 60480 CDS YP_732473.1 113968680 4250847 complement(358044..358769) 1 NC_008321.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 358769 fabG 4250847 fabG Shewanella sp. MR-4 3-ketoacyl-(acyl-carrier-protein) reductase YP_732473.1 358044 R 60480 CDS YP_732474.1 113968681 4250848 complement(358895..359434) 1 NC_008321.1 KEGG: son:SO4381 thioester dehydrase family protein; thioester dehydrase family protein 359434 4250848 Shewmr4_0337 Shewanella sp. MR-4 thioester dehydrase family protein YP_732474.1 358895 R 60480 CDS YP_732475.1 113968682 4250849 complement(359440..360663) 1 NC_008321.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase I 360663 4250849 Shewmr4_0338 Shewanella sp. MR-4 3-oxoacyl-(acyl carrier protein) synthase I YP_732475.1 359440 R 60480 CDS YP_732476.1 113968683 4250850 complement(360760..361500) 1 NC_008321.1 KEGG: son:SO4379 hypothetical protein; hypothetical protein 361500 4250850 Shewmr4_0339 Shewanella sp. MR-4 hypothetical protein YP_732476.1 360760 R 60480 CDS YP_732477.1 113968684 4250851 complement(361505..362812) 1 NC_008321.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: son:SO4378 FAD-binding protein; monooxygenase, FAD-binding 362812 4250851 Shewmr4_0340 Shewanella sp. MR-4 monooxygenase, FAD-binding YP_732477.1 361505 R 60480 CDS YP_732478.1 113968685 4250852 complement(362813..365332) 1 NC_008321.1 KEGG: son:SO4377 hypothetical protein; hypothetical protein 365332 4250852 Shewmr4_0341 Shewanella sp. MR-4 hypothetical protein YP_732478.1 362813 R 60480 CDS YP_732479.1 113968686 4250853 complement(365342..366160) 1 NC_008321.1 KEGG: son:SO4376 hypothetical protein; hypothetical protein 366160 4250853 Shewmr4_0342 Shewanella sp. MR-4 hypothetical protein YP_732479.1 365342 R 60480 CDS YP_732480.1 113968687 4250854 complement(366157..366591) 1 NC_008321.1 PFAM: thioesterase superfamily protein; KEGG: son:SO4375 hypothetical 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 366591 4250854 Shewmr4_0343 Shewanella sp. MR-4 thioesterase superfamily protein YP_732480.1 366157 R 60480 CDS YP_732481.1 113968688 4250855 complement(366588..368153) 1 NC_008321.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO4374 histidine ammonia-lyase, putative; histidine ammonia-lyase 368153 4250855 Shewmr4_0344 Shewanella sp. MR-4 histidine ammonia-lyase YP_732481.1 366588 R 60480 CDS YP_732482.1 113968689 4250856 complement(368150..369982) 1 NC_008321.1 PFAM: glycosyl transferase, family 2; lipid A biosynthesis acyltransferase; KEGG: son:SO4373 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 369982 4250856 Shewmr4_0345 Shewanella sp. MR-4 glycosyl transferase family protein YP_732482.1 368150 R 60480 CDS YP_732483.1 113968690 4250857 complement(369979..370353) 1 NC_008321.1 KEGG: son:SO4372 thioester dehydrase family protein; thioester dehydrase family protein 370353 4250857 Shewmr4_0346 Shewanella sp. MR-4 thioester dehydrase family protein YP_732483.1 369979 R 60480 CDS YP_732484.1 113968691 4250858 complement(370346..371710) 1 NC_008321.1 KEGG: son:SO4371 hypothetical protein; hypothetical protein 371710 4250858 Shewmr4_0347 Shewanella sp. MR-4 hypothetical protein YP_732484.1 370346 R 60480 CDS YP_732485.1 113968692 4250859 complement(371707..372255) 1 NC_008321.1 KEGG: son:SO4370 hypothetical protein; hypothetical protein 372255 4250859 Shewmr4_0348 Shewanella sp. MR-4 hypothetical protein YP_732485.1 371707 R 60480 CDS YP_732486.1 113968693 4250860 complement(372255..372503) 1 NC_008321.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 372503 4250860 Shewmr4_0349 Shewanella sp. MR-4 acyl carrier protein YP_732486.1 372255 R 60480 CDS YP_732487.1 113968694 4250861 complement(372513..372767) 1 NC_008321.1 KEGG: son:SO4368 acyl carrier protein, putative; acyl carrier protein 372767 4250861 Shewmr4_0350 Shewanella sp. MR-4 acyl carrier protein YP_732487.1 372513 R 60480 CDS YP_732488.1 113968695 4250862 complement(372754..373602) 1 NC_008321.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO4367 acyltransferase family protein; phospholipid/glycerol acyltransferase 373602 4250862 Shewmr4_0351 Shewanella sp. MR-4 phospholipid/glycerol acyltransferase YP_732488.1 372754 R 60480 CDS YP_732489.1 113968696 4250863 complement(373595..374332) 1 NC_008321.1 KEGG: son:SO4366 hypothetical protein; hypothetical protein 374332 4250863 Shewmr4_0352 Shewanella sp. MR-4 hypothetical protein YP_732489.1 373595 R 60480 CDS YP_732490.1 113968697 4251547 complement(374689..375585) 1 NC_008321.1 KEGG: son:SO4365 hypothetical protein; hypothetical protein 375585 4251547 Shewmr4_0353 Shewanella sp. MR-4 hypothetical protein YP_732490.1 374689 R 60480 CDS YP_732491.1 113968698 4251548 complement(375764..377854) 1 NC_008321.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 377854 4251548 Shewmr4_0354 Shewanella sp. MR-4 ATP-dependent DNA helicase RecG YP_732491.1 375764 R 60480 CDS YP_732492.1 113968699 4251549 378221..379246 1 NC_008321.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pfl:PFL_3664 periplasmic sugar-binding domain protein; periplasmic binding protein/LacI transcriptional regulator 379246 4251549 Shewmr4_0355 Shewanella sp. MR-4 periplasmic binding protein/LacI transcriptional regulator YP_732492.1 378221 D 60480 CDS YP_732493.1 113968700 4251550 379266..381092 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; histidine kinase, HAMP region domain protein; KEGG: ilo:IL2535 intracellular signaling protein (GAF,GGDEF domains); diguanylate cyclase 381092 4251550 Shewmr4_0356 Shewanella sp. MR-4 diguanylate cyclase YP_732493.1 379266 D 60480 CDS YP_732494.1 113968701 4251551 381208..381621 1 NC_008321.1 PFAM: protein of unknown function UPF0153; KEGG: son:SO4354 hypothetical Fe-S-cluster oxidoreductase; hypothetical protein 381621 4251551 Shewmr4_0357 Shewanella sp. MR-4 hypothetical protein YP_732494.1 381208 D 60480 CDS YP_732495.1 113968702 4251552 complement(381584..382423) 1 NC_008321.1 KEGG: son:SO4353 hypothetical protein; amino acid ABC transporter periplasmic protein 382423 4251552 Shewmr4_0358 Shewanella sp. MR-4 amino acid ABC transporter periplasmic protein YP_732495.1 381584 R 60480 CDS YP_732496.1 113968703 4251553 382594..383910 1 NC_008321.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO4351 CBS domain protein; hypothetical protein 383910 4251553 Shewmr4_0359 Shewanella sp. MR-4 hypothetical protein YP_732496.1 382594 D 60480 CDS YP_732497.1 113968704 4251554 complement(383969..384841) 1 NC_008321.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 384841 4251554 Shewmr4_0360 Shewanella sp. MR-4 DNA-binding transcriptional regulator IlvY YP_732497.1 383969 R 60480 CDS YP_732498.1 113968705 4251555 385038..386516 1 NC_008321.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 386516 4251555 Shewmr4_0361 Shewanella sp. MR-4 ketol-acid reductoisomerase YP_732498.1 385038 D 60480 CDS YP_732499.1 113968706 4251556 387107..388780 1 NC_008321.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 388780 4251556 Shewmr4_0362 Shewanella sp. MR-4 acetolactate synthase 2 catalytic subunit YP_732499.1 387107 D 60480 CDS YP_732500.1 113968707 4251557 388777..389037 1 NC_008321.1 KEGG: son:SO4346 acetolactate synthase small subunit; acetolactate synthase 2 regulatory subunit 389037 ilvM 4251557 ilvM Shewanella sp. MR-4 acetolactate synthase 2 regulatory subunit YP_732500.1 388777 D 60480 CDS YP_732501.1 113968708 4251558 389117..390976 1 NC_008321.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 390976 4251558 Shewmr4_0364 Shewanella sp. MR-4 dihydroxy-acid dehydratase YP_732501.1 389117 D 60480 CDS YP_732502.1 113968709 4251559 390978..392651 1 NC_008321.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 392651 4251559 Shewmr4_0365 Shewanella sp. MR-4 threonine dehydratase YP_732502.1 390978 D 60480 CDS YP_732503.1 113968710 4251560 392794..393927 1 NC_008321.1 PFAM: aminotransferase, class V; KEGG: son:SO4343 aminotransferase, class V; alanine-glyoxylate aminotransferase 393927 4251560 Shewmr4_0366 Shewanella sp. MR-4 alanine-glyoxylate aminotransferase YP_732503.1 392794 D 60480 CDS YP_732504.1 113968711 4251561 393929..394222 1 NC_008321.1 KEGG: son:SO4342 hypothetical protein; hypothetical protein 394222 4251561 Shewmr4_0367 Shewanella sp. MR-4 hypothetical protein YP_732504.1 393929 D 60480 CDS YP_732505.1 113968712 4251562 394536..394772 1 NC_008321.1 hypothetical protein 394772 4251562 Shewmr4_0368 Shewanella sp. MR-4 hypothetical protein YP_732505.1 394536 D 60480 CDS YP_732506.1 113968713 4251563 complement(395222..396046) 1 NC_008321.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO4335 phosphatidylglycerophosphatase B, putative; phosphatidylglycerophosphatase 396046 4251563 Shewmr4_0369 Shewanella sp. MR-4 phosphatidylglycerophosphatase YP_732506.1 395222 R 60480 CDS YP_732507.1 113968714 4251564 complement(396122..397594) 1 NC_008321.1 PFAM: Inner membrane CreD family protein; KEGG: son:SO4334 inner membrane protein, putative; hypothetical protein 397594 4251564 Shewmr4_0370 Shewanella sp. MR-4 hypothetical protein YP_732507.1 396122 R 60480 CDS YP_732508.1 113968715 4251932 complement(397757..398284) 1 NC_008321.1 KEGG: son:SO4333 hypothetical protein; hypothetical protein 398284 4251932 Shewmr4_0371 Shewanella sp. MR-4 hypothetical protein YP_732508.1 397757 R 60480 CDS YP_732509.1 113968716 4251933 398519..399685 1 NC_008321.1 PFAM: protein of unknown function DUF1006; KEGG: son:SO4332 hypothetical protein; hypothetical protein 399685 4251933 Shewmr4_0372 Shewanella sp. MR-4 hypothetical protein YP_732509.1 398519 D 60480 CDS YP_732510.1 113968717 4251934 complement(399682..400047) 1 NC_008321.1 KEGG: son:SO4331 hypothetical protein; hypothetical protein 400047 4251934 Shewmr4_0373 Shewanella sp. MR-4 hypothetical protein YP_732510.1 399682 R 60480 CDS YP_732511.1 113968718 4251935 complement(400107..400439) 1 NC_008321.1 KEGG: son:SO4330 hypothetical protein; hypothetical protein 400439 4251935 Shewmr4_0374 Shewanella sp. MR-4 hypothetical protein YP_732511.1 400107 R 60480 CDS YP_732512.1 113968719 4251936 complement(400534..400788) 1 NC_008321.1 PFAM: protein of unknown function DUF526; KEGG: son:SO4329 hypothetical protein; hypothetical protein 400788 4251936 Shewmr4_0375 Shewanella sp. MR-4 hypothetical protein YP_732512.1 400534 R 60480 CDS YP_732513.1 113968720 4251937 401004..403019 1 NC_008321.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: son:SO4325 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep 403019 4251937 Shewmr4_0376 Shewanella sp. MR-4 ATP-dependent DNA helicase Rep YP_732513.1 401004 D 60480 CDS YP_732514.1 113968721 4251938 complement(403049..405679) 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO4324 GGDEF domain protein; diguanylate cyclase/phosphodiesterase with GAF sensor 405679 4251938 Shewmr4_0377 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase with GAF sensor YP_732514.1 403049 R 60480 CDS YP_732515.1 113968722 4251939 complement(406591..408510) 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO4323 GGDEF domain protein; diguanylate cyclase/phosphodiesterase 408510 4251939 Shewmr4_0378 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase YP_732515.1 406591 R 60480 CDS YP_732516.1 113968723 4251940 complement(408519..409226) 1 NC_008321.1 KEGG: son:SO4322 hypothetical protein; hypothetical protein 409226 4251940 Shewmr4_0379 Shewanella sp. MR-4 hypothetical protein YP_732516.1 408519 R 60480 CDS YP_732517.1 113968724 4251941 complement(409245..409853) 1 NC_008321.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO4321 OmpA family protein; OmpA/MotB domain-containing protein 409853 4251941 Shewmr4_0380 Shewanella sp. MR-4 OmpA/MotB domain-containing protein YP_732517.1 409245 R 60480 CDS YP_732518.1 113968725 4251942 complement(409850..411265) 1 NC_008321.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: son:SO4320 agglutination protein; TolC family type I secretion outer membrane protein 411265 4251942 Shewmr4_0381 Shewanella sp. MR-4 TolC family type I secretion outer membrane protein YP_732518.1 409850 R 60480 CDS YP_732519.1 113968726 4251943 complement(411292..412674) 1 NC_008321.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: son:SO4319 HlyD family secretion protein; HlyD family type I secretion membrane fusion protein 412674 4251943 Shewmr4_0382 Shewanella sp. MR-4 HlyD family type I secretion membrane fusion protein YP_732519.1 411292 R 60480 CDS YP_732520.1 113968727 4251944 complement(412671..414848) 1 NC_008321.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4318 toxin secretion ATP-binding protein; ABC transporter-like protein 414848 4251944 Shewmr4_0383 Shewanella sp. MR-4 ABC transporter-like protein YP_732520.1 412671 R 60480 CDS YP_732521.1 113968728 4251945 complement(414937..431265) 1 NC_008321.1 TIGRFAM: putative outer membrane adhesin like protein; PFAM: Hemolysin-type calcium-binding region; KEGG: son:SO4317 RTX toxin, putative; putative outer membrane adhesin like protein 431265 4251945 Shewmr4_0384 Shewanella sp. MR-4 putative outer membrane adhesin like protein YP_732521.1 414937 R 60480 CDS YP_732522.1 113968729 4251946 complement(431571..432737) 1 NC_008321.1 PFAM: HemY domain protein; KEGG: son:SO4316 HemY protein; HemY domain-containing protein 432737 4251946 Shewmr4_0385 Shewanella sp. MR-4 HemY domain-containing protein YP_732522.1 431571 R 60480 CDS YP_732523.1 113968730 4251947 complement(432734..433963) 1 NC_008321.1 PFAM: protein of unknown function DUF513, hemX; KEGG: son:SO4315 hemX protein; hypothetical protein 433963 4251947 Shewmr4_0386 Shewanella sp. MR-4 hypothetical protein YP_732523.1 432734 R 60480 CDS YP_732524.1 113968731 4251948 complement(434024..434722) 1 NC_008321.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: son:SO4314 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 434722 4251948 Shewmr4_0387 Shewanella sp. MR-4 uroporphyrinogen III synthase HEM4 YP_732524.1 434024 R 60480 CDS YP_732525.1 113968732 4251721 complement(434769..435701) 1 NC_008321.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 435701 hemC 4251721 hemC Shewanella sp. MR-4 porphobilinogen deaminase YP_732525.1 434769 R 60480 CDS YP_732526.1 113968733 4251722 435904..438318 1 NC_008321.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 438318 cyaA 4251722 cyaA Shewanella sp. MR-4 adenylate cyclase YP_732526.1 435904 D 60480 CDS YP_732527.1 113968734 4251723 complement(438358..438687) 1 NC_008321.1 PFAM: Frataxin family protein; KEGG: son:SO4311 CyaY protein; frataxin family protein 438687 4251723 Shewmr4_0390 Shewanella sp. MR-4 frataxin family protein YP_732527.1 438358 R 60480 CDS YP_732528.1 113968735 4251724 438992..440236 1 NC_008321.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: son:SO4309 diaminopimelate decarboxylase; diaminopimelate decarboxylase 440236 4251724 Shewmr4_0391 Shewanella sp. MR-4 diaminopimelate decarboxylase YP_732528.1 438992 D 60480 CDS YP_732529.1 113968736 4251725 440307..441134 1 NC_008321.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 441134 dapF 4251725 dapF Shewanella sp. MR-4 diaminopimelate epimerase YP_732529.1 440307 D 60480 CDS YP_732530.1 113968737 4251726 441131..441766 1 NC_008321.1 PFAM: protein of unknown function DUF484; KEGG: son:SO4307 hypothetical protein; hypothetical protein 441766 4251726 Shewmr4_0393 Shewanella sp. MR-4 hypothetical protein YP_732530.1 441131 D 60480 CDS YP_732531.1 113968738 4251727 441815..442714 1 NC_008321.1 TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO4306 integrase/recombinase XerC; tyrosine recombinase XerC 442714 4251727 Shewmr4_0394 Shewanella sp. MR-4 tyrosine recombinase XerC YP_732531.1 441815 D 60480 CDS YP_732532.1 113968739 4251728 442714..443436 1 NC_008321.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO4305 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; HAD family hydrolase 443436 4251728 Shewmr4_0395 Shewanella sp. MR-4 HAD family hydrolase YP_732532.1 442714 D 60480 CDS YP_732533.1 113968740 4251729 443582..444160 1 NC_008321.1 PFAM: HupE/UreJ protein; KEGG: son:SO4304 urease accessory protein UreJ; HupE/UreJ protein 444160 4251729 Shewmr4_0396 Shewanella sp. MR-4 HupE/UreJ protein YP_732533.1 443582 D 60480 CDS YP_732534.1 113968741 4251730 complement(444165..444668) 1 NC_008321.1 PFAM: AAA-4 family protein; KEGG: son:SO4303 hypothetical protein; putative transcriptional regulator 444668 4251730 Shewmr4_0397 Shewanella sp. MR-4 putative transcriptional regulator YP_732534.1 444165 R 60480 CDS YP_732535.1 113968742 4251731 complement(444767..445513) 1 NC_008321.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: son:SO4302 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 445513 4251731 Shewmr4_0398 Shewanella sp. MR-4 hemerythrin HHE cation binding domain-containing protein YP_732535.1 444767 R 60480 CDS YP_732536.1 113968743 4251732 complement(445757..446062) 1 NC_008321.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 446062 fis 4251732 fis Shewanella sp. MR-4 DNA-binding protein Fis YP_732536.1 445757 R 60480 CDS YP_732537.1 113968744 4251733 complement(446079..447047) 1 NC_008321.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: son:SO0394 tRNA-dihydrouridine synthase B; nifR3 family TIM-barrel protein 447047 4251733 Shewmr4_0400 Shewanella sp. MR-4 nifR3 family TIM-barrel protein YP_732537.1 446079 R 60480 CDS YP_732538.1 113968745 4251734 complement(447222..448103) 1 NC_008321.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 448103 prmA 4251734 prmA Shewanella sp. MR-4 ribosomal protein L11 methyltransferase YP_732538.1 447222 R 60480 CDS YP_732539.1 113968746 4251735 448546..449271 1 NC_008321.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 449271 4251735 Shewmr4_0402 Shewanella sp. MR-4 fumarate reductase cytochrome b-556 subunit YP_732539.1 448546 D 60480 CDS YP_732540.1 113968747 4251736 449478..450149 1 NC_008321.1 PFAM: fumarate reductase respiratory complex, transmembrane subunit; KEGG: son:SO0397 fumarate reductase cytochrome B subunit; fumarate reductase respiratory complex, transmembrane subunit 450149 4251736 Shewmr4_0403 Shewanella sp. MR-4 fumarate reductase respiratory complex, transmembrane subunit YP_732540.1 449478 D 60480 CDS YP_732541.1 113968748 4251737 450211..452217 1 NC_008321.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 452217 4251737 Shewmr4_0404 Shewanella sp. MR-4 fumarate reductase flavoprotein subunit YP_732541.1 450211 D 60480 CDS YP_732542.1 113968749 4251738 452217..452948 1 NC_008321.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 452948 frdB 4251738 frdB Shewanella sp. MR-4 fumarate reductase iron-sulfur subunit YP_732542.1 452217 D 60480 CDS YP_732543.1 113968750 4251949 complement(453013..453297) 1 NC_008321.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0400 hypothetical protein; antibiotic biosynthesis monooxygenase 453297 4251949 Shewmr4_0406 Shewanella sp. MR-4 antibiotic biosynthesis monooxygenase YP_732543.1 453013 R 60480 CDS YP_732544.1 113968751 4251950 complement(453294..454316) 1 NC_008321.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0401 alcohol dehydrogenase, zinc-containing; NADPH:quinone reductase 454316 4251950 Shewmr4_0407 Shewanella sp. MR-4 NADPH:quinone reductase YP_732544.1 453294 R 60480 CDS YP_732545.1 113968752 4251951 454434..455351 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0402 transcriptional regulator, LysR family; LysR family transcriptional regulator 455351 4251951 Shewmr4_0408 Shewanella sp. MR-4 LysR family transcriptional regulator YP_732545.1 454434 D 60480 CDS YP_732546.1 113968753 4251952 complement(455535..456800) 1 NC_008321.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 456800 rho 4251952 rho Shewanella sp. MR-4 transcription termination factor Rho YP_732546.1 455535 R 60480 CDS YP_732547.1 113968754 4251953 complement(457012..457338) 1 NC_008321.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0406 thioredoxin 1; thioredoxin 457338 4251953 Shewmr4_0410 Shewanella sp. MR-4 thioredoxin YP_732547.1 457012 R 60480 CDS YP_732548.1 113968755 4251954 457491..458810 1 NC_008321.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 458810 4251954 Shewmr4_0411 Shewanella sp. MR-4 ATP-dependent RNA helicase RhlB YP_732548.1 457491 D 60480 CDS YP_732549.1 113968756 4251955 458811..459737 1 NC_008321.1 PFAM: Ppx/GppA phosphatase; KEGG: son:SO0408 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase; Ppx/GppA phosphatase 459737 4251955 Shewmr4_0412 Shewanella sp. MR-4 Ppx/GppA phosphatase YP_732549.1 458811 D 60480 CDS YP_732550.1 113968757 4251956 complement(459811..460347) 1 NC_008321.1 KEGG: son:SO0409 hypothetical protein; hypothetical protein 460347 4251956 Shewmr4_0413 Shewanella sp. MR-4 hypothetical protein YP_732550.1 459811 R 60480 CDS YP_732551.1 113968758 4251957 complement(460496..460894) 1 NC_008321.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: son:SO0410 mutator mutT protein; mutator MutT protein 460894 4251957 Shewmr4_0414 Shewanella sp. MR-4 mutator MutT protein YP_732551.1 460496 R 60480 CDS YP_732552.1 113968759 4251958 complement(460939..461148) 1 NC_008321.1 PFAM: protein of unknown function DUF329; KEGG: son:SO0411 hypothetical protein; hypothetical protein 461148 4251958 Shewmr4_0415 Shewanella sp. MR-4 hypothetical protein YP_732552.1 460939 R 60480 CDS YP_732553.1 113968760 4251959 complement(461271..462005) 1 NC_008321.1 PFAM: protein of unknown function DUF1342; KEGG: son:SO0412 hypothetical protein; hypothetical protein 462005 4251959 Shewmr4_0416 Shewanella sp. MR-4 hypothetical protein YP_732553.1 461271 R 60480 CDS YP_732554.1 113968761 4251960 complement(461998..462615) 1 NC_008321.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 462615 coaE 4251960 coaE Shewanella sp. MR-4 dephospho-CoA kinase YP_732554.1 461998 R 60480 CDS YP_732555.1 113968762 4251961 complement(462703..463629) 1 NC_008321.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: son:SO0414 leader peptidase (prepilin peptidase) / N-methyltransferase; type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A 463629 4251961 Shewmr4_0418 Shewanella sp. MR-4 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A YP_732555.1 462703 R 60480 CDS YP_732556.1 113968763 4251962 complement(463685..464950) 1 NC_008321.1 PFAM: type II secretion system protein; KEGG: son:SO0415 type IV pilus biogenesis protein PilC; type II secretion system protein 464950 4251962 Shewmr4_0419 Shewanella sp. MR-4 type II secretion system protein YP_732556.1 463685 R 60480 CDS YP_732557.1 113968764 4251963 complement(465080..466789) 1 NC_008321.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO0416 type IV pilus biogenesis protein PilB; type IV-A pilus assembly ATPase PilB 466789 4251963 Shewmr4_0420 Shewanella sp. MR-4 type IV-A pilus assembly ATPase PilB YP_732557.1 465080 R 60480 CDS YP_732558.1 113968765 4251964 466963..468294 1 NC_008321.1 PFAM: O-antigen polymerase; KEGG: eli:ELI_00020 hypothetical protein; O-antigen polymerase 468294 4251964 Shewmr4_0421 Shewanella sp. MR-4 O-antigen polymerase YP_732558.1 466963 D 60480 CDS YP_732559.1 113968766 4251965 complement(468345..468716) 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: tbd:Tbd_2200 pilus assembly protein PilA; methylation site containing protein 468716 4251965 Shewmr4_0422 Shewanella sp. MR-4 methylation site containing protein YP_732559.1 468345 R 60480 CDS YP_732560.1 113968767 4251897 complement(469613..471286) 1 NC_008321.1 PFAM: O-antigen polymerase; KEGG: vch:VC0393 hypothetical protein; O-antigen polymerase 471286 4251897 Shewmr4_0423 Shewanella sp. MR-4 O-antigen polymerase YP_732560.1 469613 R 60480 CDS YP_732561.1 113968768 4251898 complement(471348..472226) 1 NC_008321.1 KEGG: sdn:Sden_3387 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 472226 4251898 Shewmr4_0424 Shewanella sp. MR-4 nicotinate-nucleotide pyrophosphorylase YP_732561.1 471348 R 60480 CDS YP_732562.1 113968769 4251899 472477..473016 1 NC_008321.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: son:SO0421 AmpD protein; N-acetyl-anhydromuranmyl-L-alanine amidase 473016 4251899 Shewmr4_0425 Shewanella sp. MR-4 N-acetyl-anhydromuranmyl-L-alanine amidase YP_732562.1 472477 D 60480 CDS YP_732563.1 113968770 4251900 473097..473948 1 NC_008321.1 involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 473948 4251900 Shewmr4_0426 Shewanella sp. MR-4 regulatory protein AmpE YP_732563.1 473097 D 60480 CDS YP_732564.1 113968771 4251901 474586..475338 1 NC_008321.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 475338 pdhR 4251901 pdhR Shewanella sp. MR-4 transcriptional regulator PdhR YP_732564.1 474586 D 60480 CDS YP_732565.1 113968772 4251902 475419..478085 1 NC_008321.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 478085 aceE 4251902 aceE Shewanella sp. MR-4 pyruvate dehydrogenase subunit E1 YP_732565.1 475419 D 60480 CDS YP_732566.1 113968773 4251903 478098..480119 1 NC_008321.1 KEGG: son:SO0425 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 480119 4251903 Shewmr4_0429 Shewanella sp. MR-4 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_732566.1 478098 D 60480 CDS YP_732567.1 113968774 4251904 480269..481696 1 NC_008321.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 481696 4251904 Shewmr4_0430 Shewanella sp. MR-4 dihydrolipoamide dehydrogenase YP_732567.1 480269 D 60480 CDS YP_732568.1 113968775 4251905 482077..486561 1 NC_008321.1 KEGG: son:SO0427 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 486561 4251905 Shewmr4_0431 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_732568.1 482077 D 60480 CDS YP_732569.1 113968776 4251906 486792..489008 1 NC_008321.1 PFAM: surface antigen (D15); Patatin; KEGG: son:SO0428 hypothetical protein; patatin 489008 4251906 Shewmr4_0432 Shewanella sp. MR-4 patatin YP_732569.1 486792 D 60480 CDS YP_732570.1 113968777 4251907 489219..491261 1 NC_008321.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO0429 peptidase, M13 family; endothelin-converting protein 1 491261 4251907 Shewmr4_0433 Shewanella sp. MR-4 endothelin-converting protein 1 YP_732570.1 489219 D 60480 CDS YP_732571.1 113968778 4251908 complement(491301..492104) 1 NC_008321.1 PFAM: Integrase, catalytic region; KEGG: pcr:Pcryo_0715 Integrase, catalytic region; integrase catalytic subunit 492104 4251908 Shewmr4_0434 Shewanella sp. MR-4 integrase catalytic subunit YP_732571.1 491301 R 60480 CDS YP_732572.1 113968779 4251909 complement(492134..492529) 1 NC_008321.1 KEGG: dde:Dde_2987 transposase; transposase 492529 4251909 Shewmr4_0435 Shewanella sp. MR-4 transposase YP_732572.1 492134 R 60480 CDS YP_732573.1 113968780 4251910 complement(492634..493290) 1 NC_008321.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 493290 4251910 Shewmr4_0436 Shewanella sp. MR-4 2-deoxyglucose-6-phosphatase YP_732573.1 492634 R 60480 CDS YP_732574.1 113968781 4251911 493650..496322 1 NC_008321.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 496322 4251911 Shewmr4_0437 Shewanella sp. MR-4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_732574.1 493650 D 60480 CDS YP_732575.1 113968782 4251912 complement(496502..496999) 1 NC_008321.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 496999 4251912 Shewmr4_0438 Shewanella sp. MR-4 anti-RNA polymerase sigma 70 factor YP_732575.1 496502 R 60480 CDS YP_732576.1 113968783 4251913 497447..498511 1 NC_008321.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 498511 hemE 4251913 hemE Shewanella sp. MR-4 uroporphyrinogen decarboxylase YP_732576.1 497447 D 60480 CDS YP_732577.1 113968784 4251914 498888..501458 1 NC_008321.1 KEGG: son:SO0437 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 501458 4251914 Shewmr4_0440 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_732577.1 498888 D 60480 CDS YP_732578.1 113968785 4251565 501534..502337 1 NC_008321.1 PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: son:SO0438 short chain dehydrogenase; short chain dehydrogenase 502337 4251565 Shewmr4_0441 Shewanella sp. MR-4 short chain dehydrogenase YP_732578.1 501534 D 60480 CDS YP_732579.1 113968786 4251566 complement(502341..502565) 1 NC_008321.1 KEGG: son:SO0439 hypothetical protein; hypothetical protein 502565 4251566 Shewmr4_0442 Shewanella sp. MR-4 hypothetical protein YP_732579.1 502341 R 60480 CDS YP_732580.1 113968787 4251567 complement(502722..505943) 1 NC_008321.1 KEGG: son:SO0440 hypothetical protein; hypothetical protein 505943 4251567 Shewmr4_0443 Shewanella sp. MR-4 hypothetical protein YP_732580.1 502722 R 60480 CDS YP_732581.1 113968788 4251568 complement(506125..507423) 1 NC_008321.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 507423 4251568 Shewmr4_0444 Shewanella sp. MR-4 phosphoribosylamine--glycine ligase YP_732581.1 506125 R 60480 CDS YP_732582.1 113968789 4251569 complement(507529..509127) 1 NC_008321.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 509127 purH 4251569 purH Shewanella sp. MR-4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_732582.1 507529 R 60480 CDS YP_732583.1 113968790 4251570 509465..509938 1 NC_008321.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 509938 zntR 4251570 zntR Shewanella sp. MR-4 zinc-responsive transcriptional regulator YP_732583.1 509465 D 60480 CDS YP_732584.1 113968791 4251571 509941..511431 1 NC_008321.1 PFAM: permease; KEGG: son:SO0444 hypothetical protein; permease 511431 4251571 Shewmr4_0447 Shewanella sp. MR-4 permease YP_732584.1 509941 D 60480 CDS YP_732585.1 113968792 4251572 complement(511538..512425) 1 NC_008321.1 PFAM: band 7 protein; KEGG: son:SO0445 HflC protein, putative; hypothetical protein 512425 4251572 Shewmr4_0448 Shewanella sp. MR-4 hypothetical protein YP_732585.1 511538 R 60480 CDS YP_732586.1 113968793 4251573 512766..513020 1 NC_008321.1 KEGG: son:SO0447 hypothetical protein; hypothetical protein 513020 4251573 Shewmr4_0449 Shewanella sp. MR-4 hypothetical protein YP_732586.1 512766 D 60480 CDS YP_732587.1 113968794 4251574 513024..513314 1 NC_008321.1 KEGG: son:SO0448 hypothetical protein; hypothetical protein 513314 4251574 Shewmr4_0450 Shewanella sp. MR-4 hypothetical protein YP_732587.1 513024 D 60480 CDS YP_732588.1 113968795 4251575 513321..514940 1 NC_008321.1 PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO0449 hypothetical protein; PepSY-associated TM helix domain-containing protein 514940 4251575 Shewmr4_0451 Shewanella sp. MR-4 PepSY-associated TM helix domain-containing protein YP_732588.1 513321 D 60480 CDS YP_732589.1 113968796 4251576 complement(514987..516159) 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0450 major facilitator family protein; major facilitator transporter 516159 4251576 Shewmr4_0452 Shewanella sp. MR-4 major facilitator transporter YP_732589.1 514987 R 60480 CDS YP_732590.1 113968797 4251577 complement(516381..517418) 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: vpa:VPA0476 hypothetical protein; diguanylate cyclase with GAF sensor 517418 4251577 Shewmr4_0453 Shewanella sp. MR-4 diguanylate cyclase with GAF sensor YP_732590.1 516381 R 60480 CDS YP_732591.1 113968798 4251578 517717..517980 1 NC_008321.1 hypothetical protein 517980 4251578 Shewmr4_0454 Shewanella sp. MR-4 hypothetical protein YP_732591.1 517717 D 60480 CDS YP_732592.1 113968799 4251579 518068..519471 1 NC_008321.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vch:VCA0025 transporter, NadC family; anion transporter 519471 4251579 Shewmr4_0455 Shewanella sp. MR-4 anion transporter YP_732592.1 518068 D 60480 CDS YP_732593.1 113968800 4251580 complement(519540..519962) 1 NC_008321.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0452 thioredoxin 2; thioredoxin 519962 4251580 Shewmr4_0456 Shewanella sp. MR-4 thioredoxin YP_732593.1 519540 R 60480 CDS YP_732594.1 113968801 4251581 520152..520487 1 NC_008321.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO0453 peptidyl-prolyl cis-trans isomerase FkbP; peptidylprolyl isomerase, FKBP-type 520487 4251581 Shewmr4_0457 Shewanella sp. MR-4 peptidylprolyl isomerase, FKBP-type YP_732594.1 520152 D 60480 CDS YP_732595.1 113968802 4250793 520634..521620 1 NC_008321.1 KEGG: chy:CHY_1906 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; diguanylate cyclase with PAS/PAC sensor 521620 4250793 Shewmr4_0458 Shewanella sp. MR-4 diguanylate cyclase with PAS/PAC sensor YP_732595.1 520634 D 60480 CDS YP_732596.1 113968803 4250794 complement(521667..522065) 1 NC_008321.1 KEGG: son:SO0454 hypothetical protein; hypothetical protein 522065 4250794 Shewmr4_0459 Shewanella sp. MR-4 hypothetical protein YP_732596.1 521667 R 60480 CDS YP_732597.1 113968804 4250795 complement(522099..524132) 1 NC_008321.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO0455 hypothetical transporter; TRAP transporter, 4TM/12TM fusion protein 524132 4250795 Shewmr4_0460 Shewanella sp. MR-4 TRAP transporter, 4TM/12TM fusion protein YP_732597.1 522099 R 60480 CDS YP_732598.1 113968805 4250796 complement(524240..525196) 1 NC_008321.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: son:SO0456 immunogenic-related protein; TRAP transporter solute receptor TAXI family protein 525196 4250796 Shewmr4_0461 Shewanella sp. MR-4 TRAP transporter solute receptor TAXI family protein YP_732598.1 524240 R 60480 CDS YP_732599.1 113968806 4250797 complement(525699..525833) 1 NC_008321.1 KEGG: son:SO0458 hypothetical protein; hypothetical protein 525833 4250797 Shewmr4_0462 Shewanella sp. MR-4 hypothetical protein YP_732599.1 525699 R 60480 CDS YP_732600.1 113968807 4250798 complement(526135..527628) 1 NC_008321.1 PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: son:SO0459 hypothetical protein; hypothetical protein 527628 4250798 Shewmr4_0463 Shewanella sp. MR-4 hypothetical protein YP_732600.1 526135 R 60480 CDS YP_732601.1 113968808 4250799 528088..528321 1 NC_008321.1 KEGG: son:SO0461 hypothetical protein; hypothetical protein 528321 4250799 Shewmr4_0464 Shewanella sp. MR-4 hypothetical protein YP_732601.1 528088 D 60480 CDS YP_732602.1 113968809 4250800 528333..528758 1 NC_008321.1 KEGG: son:SO0462 hypothetical protein; hypothetical protein 528758 4250800 Shewmr4_0465 Shewanella sp. MR-4 hypothetical protein YP_732602.1 528333 D 60480 CDS YP_732603.1 113968810 4250801 528806..529687 1 NC_008321.1 PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: son:SO0463 hypothetical protein; hypothetical protein 529687 4250801 Shewmr4_0466 Shewanella sp. MR-4 hypothetical protein YP_732603.1 528806 D 60480 CDS YP_732604.1 113968811 4250802 529716..530123 1 NC_008321.1 PFAM: NUDIX hydrolase; KEGG: son:SO0464 MutT/nudix family protein; NUDIX hydrolase 530123 4250802 Shewmr4_0467 Shewanella sp. MR-4 NUDIX hydrolase YP_732604.1 529716 D 60480 CDS YP_732605.1 113968812 4250803 530166..531170 1 NC_008321.1 PFAM: SEC-C motif domain protein; KEGG: ppr:PBPRA0194 hypothetical protein; SecC motif-containing protein 531170 4250803 Shewmr4_0468 Shewanella sp. MR-4 SecC motif-containing protein YP_732605.1 530166 D 60480 CDS YP_732606.1 113968813 4250804 531181..532299 1 NC_008321.1 KEGG: hch:HCH_06329 hypothetical protein; hypothetical protein 532299 4250804 Shewmr4_0469 Shewanella sp. MR-4 hypothetical protein YP_732606.1 531181 D 60480 CDS YP_732607.1 113968814 4250805 complement(532446..533759) 1 NC_008321.1 KEGG: vvy:VV0261 hypothetical protein; hypothetical protein 533759 4250805 Shewmr4_0470 Shewanella sp. MR-4 hypothetical protein YP_732607.1 532446 R 60480 CDS YP_732608.1 113968815 4250806 complement(534479..536794) 1 NC_008321.1 KEGG: vpa:VPA1255 hypothetical protein; hypothetical protein 536794 4250806 Shewmr4_0471 Shewanella sp. MR-4 hypothetical protein YP_732608.1 534479 R 60480 CDS YP_732609.1 113968816 4250807 complement(536800..537042) 1 NC_008321.1 KEGG: psp:PSPPH_0607 hypothetical protein; hypothetical protein 537042 4250807 Shewmr4_0472 Shewanella sp. MR-4 hypothetical protein YP_732609.1 536800 R 60480 CDS YP_732610.1 113968817 4250808 537637..539805 1 NC_008321.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 539805 uvrD 4250808 uvrD Shewanella sp. MR-4 DNA-dependent helicase II YP_732610.1 537637 D 60480 CDS YP_732611.1 113968818 4250809 539931..540791 1 NC_008321.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 540791 ubiA 4250809 ubiA Shewanella sp. MR-4 4-hydroxybenzoate octaprenyltransferase YP_732611.1 539931 D 60480 CDS YP_732612.1 113968819 4250810 complement(540860..541114) 1 NC_008321.1 hypothetical protein 541114 4250810 Shewmr4_0475 Shewanella sp. MR-4 hypothetical protein YP_732612.1 540860 R 60480 CDS YP_732613.1 113968820 4250900 541423..542484 1 NC_008321.1 PFAM: dihydroorotate dehydrogenase; 2-nitropropane dioxygenase, NPD; KEGG: son:SO0471 hypothetical dioxygenase; 2-nitropropane dioxygenase, NPD 542484 4250900 Shewmr4_0476 Shewanella sp. MR-4 2-nitropropane dioxygenase, NPD YP_732613.1 541423 D 60480 CDS YP_732614.1 113968821 4250901 542631..543785 1 NC_008321.1 KEGG: sdn:Sden_3320 hypothetical protein; hypothetical protein 543785 4250901 Shewmr4_0477 Shewanella sp. MR-4 hypothetical protein YP_732614.1 542631 D 60480 CDS YP_732615.1 113968822 4250902 544028..544948 1 NC_008321.1 PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: cps:CPS_0994 hypothetical protein; redoxin domain-containing protein 544948 4250902 Shewmr4_0478 Shewanella sp. MR-4 redoxin domain-containing protein YP_732615.1 544028 D 60480 CDS YP_732616.1 113968823 4250903 545166..546284 1 NC_008321.1 PFAM: protein of unknown function UPF0118; KEGG: son:SO0472 hypothetical protein; hypothetical protein 546284 4250903 Shewmr4_0479 Shewanella sp. MR-4 hypothetical protein YP_732616.1 545166 D 60480 CDS YP_732617.1 113968824 4250904 complement(546281..546571) 1 NC_008321.1 KEGG: xcv:XCV4020 putative mitomycin resistance protein; putative mitomycin resistance protein 546571 4250904 Shewmr4_0480 Shewanella sp. MR-4 putative mitomycin resistance protein YP_732617.1 546281 R 60480 CDS YP_732618.1 113968825 4250905 complement(546640..547686) 1 NC_008321.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO4003 response regulator; response regulator receiver modulated metal dependent phosphohydrolase 547686 4250905 Shewmr4_0481 Shewanella sp. MR-4 response regulator receiver modulated metal dependent phosphohydrolase YP_732618.1 546640 R 60480 CDS YP_732619.1 113968826 4250906 548242..553287 1 NC_008321.1 KEGG: son:SO4002 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; extracellular solute-binding protein, family 3; multi-sensor hybrid histidine kinase 553287 4250906 Shewmr4_0482 Shewanella sp. MR-4 multi-sensor hybrid histidine kinase YP_732619.1 548242 D 60480 CDS YP_732620.1 113968827 4250907 553278..554852 1 NC_008321.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; KEGG: son:SO3999 sensor histidine kinase; response regulator receiver sensor signal transduction histidine kinase 554852 4250907 Shewmr4_0483 Shewanella sp. MR-4 response regulator receiver sensor signal transduction histidine kinase YP_732620.1 553278 D 60480 CDS YP_732621.1 113968828 4250908 complement(554997..555575) 1 NC_008321.1 KEGG: son:SO0474 hypothetical protein; hypothetical protein 555575 4250908 Shewmr4_0484 Shewanella sp. MR-4 hypothetical protein YP_732621.1 554997 R 60480 CDS YP_732622.1 113968829 4250909 complement(555838..556422) 1 NC_008321.1 PFAM: Redoxin domain protein; KEGG: son:SO0476 thioredoxin, putative; redoxin domain-containing protein 556422 4250909 Shewmr4_0485 Shewanella sp. MR-4 redoxin domain-containing protein YP_732622.1 555838 R 60480 CDS YP_732623.1 113968830 4250910 complement(556479..556913) 1 NC_008321.1 PFAM: cytochrome C biogenesis protein; KEGG: son:SO0477 cytochrome c-type biogenesis protein NrfF precursor; cytochrome C biogenesis protein 556913 4250910 Shewmr4_0486 Shewanella sp. MR-4 cytochrome C biogenesis protein YP_732623.1 556479 R 60480 CDS YP_732624.1 113968831 4250911 complement(556910..558949) 1 NC_008321.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO0478 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 558949 4250911 Shewmr4_0487 Shewanella sp. MR-4 cytochrome c-type biogenesis protein CcmF YP_732624.1 556910 R 60480 CDS YP_732625.1 113968832 4250912 559496..561625 1 NC_008321.1 KEGG: son:SO0479 cytochrome c, putative; cytochrome c 561625 4250912 Shewmr4_0488 Shewanella sp. MR-4 cytochrome c YP_732625.1 559496 D 60480 CDS YP_732626.1 113968833 4250913 561684..562127 1 NC_008321.1 SMART: Rhodanese domain protein; KEGG: son:SO0480 hypothetical protein; rhodanese domain-containing protein 562127 4250913 Shewmr4_0489 Shewanella sp. MR-4 rhodanese domain-containing protein YP_732626.1 561684 D 60480 CDS YP_732627.1 113968834 4250914 562221..563000 1 NC_008321.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO0481 peptidyl-prolyl cis-trans isomerase, FKBP-type; FKBP-type peptidyl-prolyl isomerase domain-containing protein 563000 4250914 Shewmr4_0490 Shewanella sp. MR-4 FKBP-type peptidyl-prolyl isomerase domain-containing protein YP_732627.1 562221 D 60480 CDS YP_732628.1 113968835 4250915 563065..563739 1 NC_008321.1 KEGG: son:SO0482 formate-dependent nitrite reductase, NrfG protein; formate-dependent nitrite reductase, NrfG protein 563739 4250915 Shewmr4_0491 Shewanella sp. MR-4 formate-dependent nitrite reductase, NrfG protein YP_732628.1 563065 D 60480 CDS YP_732629.1 113968836 4250916 563826..564533 1 NC_008321.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO0483 formate-dependent nitrite reductase, NrfC protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 564533 4250916 Shewmr4_0492 Shewanella sp. MR-4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_732629.1 563826 D 60480 CDS YP_732630.1 113968837 4251739 564536..565483 1 NC_008321.1 PFAM: Polysulphide reductase, NrfD; KEGG: son:SO0484 formate-dependent nitrite reductase, NrfD protein; polysulfide reductase, NrfD 565483 4251739 Shewmr4_0493 Shewanella sp. MR-4 polysulfide reductase, NrfD YP_732630.1 564536 D 60480 CDS YP_732631.1 113968838 4251740 565603..566094 1 NC_008321.1 PFAM: NosL family protein; KEGG: son:SO0485 NosL protein; NosL family protein 566094 4251740 Shewmr4_0494 Shewanella sp. MR-4 NosL family protein YP_732631.1 565603 D 60480 CDS YP_732632.1 113968839 4251741 566104..567393 1 NC_008321.1 PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: son:SO0486 copper ABC transporter, periplasmic copper-binding protein; periplasmic copper-binding 567393 4251741 Shewmr4_0495 Shewanella sp. MR-4 periplasmic copper-binding YP_732632.1 566104 D 60480 CDS YP_732633.1 113968840 4251742 567374..568420 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0487 copper ABC transporter, ATP-binding protein; ABC transporter-like protein 568420 4251742 Shewmr4_0496 Shewanella sp. MR-4 ABC transporter-like protein YP_732633.1 567374 D 60480 CDS YP_732634.1 113968841 4251743 568417..569304 1 NC_008321.1 KEGG: son:SO0488 copper ABC transporter, permease protein; copper ABC transporter permease 569304 4251743 Shewmr4_0497 Shewanella sp. MR-4 copper ABC transporter permease YP_732634.1 568417 D 60480 CDS YP_732635.1 113968842 4251744 569518..570801 1 NC_008321.1 PFAM: transcriptional regulator domain protein; KEGG: son:SO0490 transcriptional regulator; lysine decarboxylase transcriptional regulator, CadC 570801 4251744 Shewmr4_0498 Shewanella sp. MR-4 lysine decarboxylase transcriptional regulator, CadC YP_732635.1 569518 D 60480 CDS YP_732636.1 113968843 4251745 571034..573166 1 NC_008321.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO0491 peptidase, M13 family; endothelin-converting protein 1 573166 4251745 Shewmr4_0499 Shewanella sp. MR-4 endothelin-converting protein 1 YP_732636.1 571034 D 60480 CDS YP_732637.1 113968844 4251746 complement(573209..575602) 1 NC_008321.1 PFAM: fatty acid cistrans isomerase; KEGG: vvy:VVA0636 fatty acid cis/trans isomerase; fatty acid cistrans isomerase 575602 4251746 Shewmr4_0500 Shewanella sp. MR-4 fatty acid cistrans isomerase YP_732637.1 573209 R 60480 CDS YP_732638.1 113968845 4251747 575886..580832 1 NC_008321.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO4539 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 580832 4251747 Shewmr4_0501 Shewanella sp. MR-4 peptidase S8/S53 subtilisin kexin sedolisin YP_732638.1 575886 D 60480 CDS YP_732639.1 113968846 4251748 580981..581607 1 NC_008321.1 KEGG: son:SO0492 hypothetical flavoprotein oxygenase; flavoprotein oxygenase 581607 4251748 Shewmr4_0502 Shewanella sp. MR-4 flavoprotein oxygenase YP_732639.1 580981 D 60480 CDS YP_732640.1 113968847 4251749 complement(582004..583914) 1 NC_008321.1 hypothetical protein 583914 4251749 Shewmr4_0503 Shewanella sp. MR-4 hypothetical protein YP_732640.1 582004 R 60480 CDS YP_732641.1 113968848 4251750 584225..585238 1 NC_008321.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3360 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 585238 4251750 Shewmr4_0504 Shewanella sp. MR-4 transposase IS116/IS110/IS902 family protein YP_732641.1 584225 D 60480 CDS YP_732642.1 113968849 4251751 complement(585638..586336) 1 NC_008321.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 586336 fre 4251751 fre Shewanella sp. MR-4 FMN reductase YP_732642.1 585638 R 60480 CDS YP_732643.1 113968850 4251752 complement(586447..587928) 1 NC_008321.1 TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: son:SO0506 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; 3-octaprenyl-4hydroxybenzoate decarboxylase 587928 4251752 Shewmr4_0506 Shewanella sp. MR-4 3-octaprenyl-4hydroxybenzoate decarboxylase YP_732643.1 586447 R 60480 CDS YP_732644.1 113968851 4251753 588087..588857 1 NC_008321.1 KEGG: son:SO0508 hypothetical protein; hypothetical protein 588857 4251753 Shewmr4_0507 Shewanella sp. MR-4 hypothetical protein YP_732644.1 588087 D 60480 CDS YP_732645.1 113968852 4251754 588949..590160 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr4870 MFS permease; major facilitator transporter 590160 4251754 Shewmr4_0508 Shewanella sp. MR-4 major facilitator transporter YP_732645.1 588949 D 60480 CDS YP_732646.1 113968853 4251755 complement(590212..590889) 1 NC_008321.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: son:SO0510 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 590889 4251755 Shewmr4_0509 Shewanella sp. MR-4 short-chain dehydrogenase/reductase SDR YP_732646.1 590212 R 60480 CDS YP_732647.1 113968854 4251756 complement(590905..591372) 1 NC_008321.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: son:SO0511 acetyl-CoA carboxylase, biotin carboxyl carrier protein; biotin carboxyl carrier protein 591372 4251756 Shewmr4_0510 Shewanella sp. MR-4 biotin carboxyl carrier protein YP_732647.1 590905 R 60480 CDS YP_732648.1 113968855 4251634 complement(591407..591841) 1 NC_008321.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 591841 4251634 Shewmr4_0511 Shewanella sp. MR-4 3-dehydroquinate dehydratase YP_732648.1 591407 R 60480 CDS YP_732649.1 113968856 4251635 complement(591943..592356) 1 NC_008321.1 PFAM: Class I peptide chain release factor; KEGG: son:SO0513 hypothetical protein; peptidyl-tRNA hydrolase domain protein 592356 4251635 Shewmr4_0512 Shewanella sp. MR-4 peptidyl-tRNA hydrolase domain protein YP_732649.1 591943 R 60480 CDS YP_732650.1 113968857 4251636 592505..592870 1 NC_008321.1 KEGG: son:SO0514 hypothetical protein; hypothetical protein 592870 4251636 Shewmr4_0513 Shewanella sp. MR-4 hypothetical protein YP_732650.1 592505 D 60480 CDS YP_732651.1 113968858 4251637 592907..593110 1 NC_008321.1 KEGG: son:SO0515 hypothetical protein; hypothetical protein 593110 4251637 Shewmr4_0514 Shewanella sp. MR-4 hypothetical protein YP_732651.1 592907 D 60480 CDS YP_732652.1 113968859 4251638 593274..593723 1 NC_008321.1 KEGG: son:SO0516 hypothetical protein; hypothetical protein 593723 4251638 Shewmr4_0515 Shewanella sp. MR-4 hypothetical protein YP_732652.1 593274 D 60480 CDS YP_732653.1 113968860 4251639 593938..595308 1 NC_008321.1 PFAM: outer membrane efflux protein; KEGG: son:SO0518 outer membrane efflux family protein, putative; outer membrane efflux protein 595308 4251639 Shewmr4_0516 Shewanella sp. MR-4 outer membrane efflux protein YP_732653.1 593938 D 60480 CDS YP_732654.1 113968861 4251640 595325..596617 1 NC_008321.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO0519 cation efflux protein, putative; RND family efflux transporter MFP subunit 596617 4251640 Shewmr4_0517 Shewanella sp. MR-4 RND family efflux transporter MFP subunit YP_732654.1 595325 D 60480 CDS YP_732655.1 113968862 4251641 596714..599926 1 NC_008321.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SO0520 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 599926 4251641 Shewmr4_0518 Shewanella sp. MR-4 CzcA family heavy metal efflux protein YP_732655.1 596714 D 60480 CDS YP_732656.1 113968863 4251642 600056..600142 1 NC_008321.1 KEGG: son:SO0521 hypothetical protein; hypothetical protein 600142 4251642 Shewmr4_0519 Shewanella sp. MR-4 hypothetical protein YP_732656.1 600056 D 60480 CDS YP_732657.1 113968864 4251643 600392..600646 1 NC_008321.1 KEGG: son:SO0521 hypothetical protein; hypothetical protein 600646 4251643 Shewmr4_0520 Shewanella sp. MR-4 hypothetical protein YP_732657.1 600392 D 60480 CDS YP_732658.1 113968865 4251644 complement(600732..601142) 1 NC_008321.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 601142 mscL 4251644 mscL Shewanella sp. MR-4 large-conductance mechanosensitive channel YP_732658.1 600732 R 60480 CDS YP_732659.1 113968866 4251645 complement(601326..602279) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0523 transcriptional regulator, LysR family; LysR family transcriptional regulator 602279 4251645 Shewmr4_0522 Shewanella sp. MR-4 LysR family transcriptional regulator YP_732659.1 601326 R 60480 CDS YP_732660.1 113968867 4251646 602377..603432 1 NC_008321.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO0524 HlyD family secretion protein; secretion protein HlyD family protein 603432 4251646 Shewmr4_0523 Shewanella sp. MR-4 secretion protein HlyD family protein YP_732660.1 602377 D 60480 CDS YP_732661.1 113968868 4251647 603446..605053 1 NC_008321.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0525 drug resistance transporter, EmrB/QacA family protein; EmrB/QacA family drug resistance transporter 605053 4251647 Shewmr4_0524 Shewanella sp. MR-4 EmrB/QacA family drug resistance transporter YP_732661.1 603446 D 60480 CDS YP_732662.1 113968869 4251648 605449..605922 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0526 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 605922 4251648 Shewmr4_0525 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_732662.1 605449 D 60480 CDS YP_732663.1 113968870 4251649 605966..606292 1 NC_008321.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0527 hypothetical protein; antibiotic biosynthesis monooxygenase 606292 4251649 Shewmr4_0526 Shewanella sp. MR-4 antibiotic biosynthesis monooxygenase YP_732663.1 605966 D 60480 CDS YP_732664.1 113968871 4251650 606618..607982 1 NC_008321.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: noc:Noc_1911 two component sigma-54 specific, transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 607982 4251650 Shewmr4_0527 Shewanella sp. MR-4 sigma-54 dependent trancsriptional regulator YP_732664.1 606618 D 60480 CDS YP_732665.1 113968872 4250882 608182..609903 1 NC_008321.1 KEGG: vpa:VPA0990 hypothetical protein; hypothetical protein 609903 4250882 Shewmr4_0528 Shewanella sp. MR-4 hypothetical protein YP_732665.1 608182 D 60480 CDS YP_732666.1 113968873 4250883 complement(609963..611924) 1 NC_008321.1 PFAM: Peptidase M11, gametolysin; KEGG: vpa:VPA0991 hypothetical protein; peptidase M11, gametolysin 611924 4250883 Shewmr4_0529 Shewanella sp. MR-4 peptidase M11, gametolysin YP_732666.1 609963 R 60480 CDS YP_732667.1 113968874 4250884 612936..613823 1 NC_008321.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: son:SO0528 hypothetical protein; radical SAM domain-containing protein 613823 4250884 Shewmr4_0530 Shewanella sp. MR-4 radical SAM domain-containing protein YP_732667.1 612936 D 60480 CDS YP_732668.1 113968875 4250885 complement(613891..615999) 1 NC_008321.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1156 TonB-dependent receptor; TonB-dependent siderophore receptor 615999 4250885 Shewmr4_0531 Shewanella sp. MR-4 TonB-dependent siderophore receptor YP_732668.1 613891 R 60480 CDS YP_732669.1 113968876 4250886 616319..616663 1 NC_008321.1 PFAM: regulatory protein, ArsR; KEGG: son:SO0532 arsenical resistence operon repressor; ArsR family transcriptional regulator 616663 4250886 Shewmr4_0532 Shewanella sp. MR-4 ArsR family transcriptional regulator YP_732669.1 616319 D 60480 CDS YP_732670.1 113968877 4250887 616699..617718 1 NC_008321.1 PFAM: Bile acid:sodium symporter; KEGG: son:SO0534 arsenical pump membrane protein, putative; bile acid:sodium symporter 617718 4250887 Shewmr4_0533 Shewanella sp. MR-4 bile acid:sodium symporter YP_732670.1 616699 D 60480 CDS YP_732671.1 113968878 4250888 617760..618755 1 NC_008321.1 PFAM: permease; KEGG: son:SO0535 hypothetical protein; permease 618755 4250888 Shewmr4_0534 Shewanella sp. MR-4 permease YP_732671.1 617760 D 60480 CDS YP_732672.1 113968879 4250889 618765..619001 1 NC_008321.1 KEGG: son:SO0536 redox-active disulfide protein 2; redox-active disulfide protein 2 619001 4250889 Shewmr4_0535 Shewanella sp. MR-4 redox-active disulfide protein 2 YP_732672.1 618765 D 60480 CDS YP_732673.1 113968880 4250890 619186..620199 1 NC_008321.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 620199 4250890 Shewmr4_0536 Shewanella sp. MR-4 glyceraldehyde-3-phosphate dehydrogenase YP_732673.1 619186 D 60480 CDS YP_732674.1 113968881 4250891 620209..621471 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0539 transporter, putative; major facilitator transporter 621471 4250891 Shewmr4_0537 Shewanella sp. MR-4 major facilitator transporter YP_732674.1 620209 D 60480 CDS YP_732675.1 113968882 4250892 621476..622345 1 NC_008321.1 KEGG: son:SO0540 hypothetical protein; hypothetical protein 622345 4250892 Shewmr4_0538 Shewanella sp. MR-4 hypothetical protein YP_732675.1 621476 D 60480 CDS YP_732676.1 113968883 4250893 622464..623906 1 NC_008321.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: son:SO0541 metallo-beta-lactamase family protein; RNA-metabolizing metallo-beta-lactamase 623906 4250893 Shewmr4_0539 Shewanella sp. MR-4 RNA-metabolizing metallo-beta-lactamase YP_732676.1 622464 D 60480 CDS YP_732677.1 113968884 4250894 complement(623951..625306) 1 NC_008321.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1704; KEGG: son:SO0542 hypothetical protein; hypothetical protein 625306 4250894 Shewmr4_0540 Shewanella sp. MR-4 hypothetical protein YP_732677.1 623951 R 60480 CDS YP_732678.1 113968885 4250895 625586..626548 1 NC_008321.1 KEGG: sdn:Sden_0651 hypothetical protein; hypothetical protein 626548 4250895 Shewmr4_0541 Shewanella sp. MR-4 hypothetical protein YP_732678.1 625586 D 60480 CDS YP_732679.1 113968886 4250896 complement(626656..626832) 1 NC_008321.1 KEGG: son:SO0543 hypothetical protein; hypothetical protein 626832 4250896 Shewmr4_0542 Shewanella sp. MR-4 hypothetical protein YP_732679.1 626656 R 60480 CDS YP_732680.1 113968887 4250897 627149..629302 1 NC_008321.1 KEGG: son:SO0544 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 629302 4250897 Shewmr4_0543 Shewanella sp. MR-4 multi-sensor signal transduction histidine kinase YP_732680.1 627149 D 60480 CDS YP_732681.1 113968888 4250898 629299..629733 1 NC_008321.1 PFAM: response regulator receiver; KEGG: son:SO0544.1 hypothetical CheY-homologous receiver domain protein; response regulator receiver protein 629733 4250898 Shewmr4_0544 Shewanella sp. MR-4 response regulator receiver protein YP_732681.1 629299 D 60480 CDS YP_732682.1 113968889 4250899 629743..631461 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: son:SO0545 response regulator; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 631461 4250899 Shewmr4_0545 Shewanella sp. MR-4 response regulator receiver modulated diguanylate cyclase/phosphodiesterase YP_732682.1 629743 D 60480 CDS YP_732683.1 113968890 4251774 631628..632533 1 NC_008321.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO0546 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 632533 4251774 Shewmr4_0546 Shewanella sp. MR-4 alpha-L-glutamate ligase YP_732683.1 631628 D 60480 CDS YP_732684.1 113968891 4251775 complement(632577..633269) 1 NC_008321.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO0547 hypothetical protein; hypothetical protein 633269 4251775 Shewmr4_0547 Shewanella sp. MR-4 hypothetical protein YP_732684.1 632577 R 60480 CDS YP_732685.1 113968892 4251776 complement(633560..633832) 1 NC_008321.1 PFAM: histone family protein DNA-binding protein; KEGG: son:SO0548 DNA-binding protein, HU family; histone family protein DNA-binding protein 633832 4251776 Shewmr4_0548 Shewanella sp. MR-4 histone family protein DNA-binding protein YP_732685.1 633560 R 60480 CDS YP_732686.1 113968893 4251777 complement(633979..634776) 1 NC_008321.1 PFAM: response regulator receiver; KEGG: son:SO0549 chemotaxis protein CheY/response regulator receiver domain protein; response regulator receiver protein 634776 4251777 Shewmr4_0549 Shewanella sp. MR-4 response regulator receiver protein YP_732686.1 633979 R 60480 CDS YP_732687.1 113968894 4251778 complement(634851..635234) 1 NC_008321.1 KEGG: son:SO0550 hypothetical protein; hypothetical protein 635234 4251778 Shewmr4_0550 Shewanella sp. MR-4 hypothetical protein YP_732687.1 634851 R 60480 CDS YP_732688.1 113968895 4251779 635360..635869 1 NC_008321.1 KEGG: son:SO0551 hypothetical protein; hypothetical protein 635869 4251779 Shewmr4_0551 Shewanella sp. MR-4 hypothetical protein YP_732688.1 635360 D 60480 CDS YP_732689.1 113968896 4251780 complement(635876..636190) 1 NC_008321.1 KEGG: son:SO0552 hypothetical protein; hypothetical protein 636190 4251780 Shewmr4_0552 Shewanella sp. MR-4 hypothetical protein YP_732689.1 635876 R 60480 CDS YP_732690.1 113968897 4251781 complement(636340..636648) 1 NC_008321.1 KEGG: son:SO0553 hypothetical protein; hypothetical protein 636648 4251781 Shewmr4_0553 Shewanella sp. MR-4 hypothetical protein YP_732690.1 636340 R 60480 CDS YP_732691.1 113968898 4251782 636919..637443 1 NC_008321.1 KEGG: son:SO0554 hypothetical protein; hypothetical protein 637443 4251782 Shewmr4_0554 Shewanella sp. MR-4 hypothetical protein YP_732691.1 636919 D 60480 CDS YP_732692.1 113968899 4251783 complement(637466..639217) 1 NC_008321.1 PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: son:SO0555 hypothetical protein; diguanylate cyclase/phosphodiesterase 639217 4251783 Shewmr4_0555 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase YP_732692.1 637466 R 60480 CDS YP_732693.1 113968900 4251784 complement(639356..639664) 1 NC_008321.1 KEGG: son:SO0556 hypothetical protein; hypothetical protein 639664 4251784 Shewmr4_0556 Shewanella sp. MR-4 hypothetical protein YP_732693.1 639356 R 60480 CDS YP_732694.1 113968901 4251785 639713..640609 1 NC_008321.1 PFAM: GumN family protein; KEGG: son:SO0557 hypothetical protein; GumN family protein 640609 4251785 Shewmr4_0557 Shewanella sp. MR-4 GumN family protein YP_732694.1 639713 D 60480 CDS YP_732695.1 113968902 4251786 complement(640737..641525) 1 NC_008321.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0558 smtA protein; type 11 methyltransferase 641525 4251786 Shewmr4_0558 Shewanella sp. MR-4 type 11 methyltransferase YP_732695.1 640737 R 60480 CDS YP_732696.1 113968903 4251787 641888..642751 1 NC_008321.1 PFAM: MaoC domain protein dehydratase; KEGG: son:SO0559 MaoC domain protein; dehydratase 642751 4251787 Shewmr4_0559 Shewanella sp. MR-4 dehydratase YP_732696.1 641888 D 60480 CDS YP_732697.1 113968904 4251788 complement(642806..643696) 1 NC_008321.1 PFAM: aldo/keto reductase; KEGG: vpa:VPA1163 oxidoreductase, aldo/keto reductase 2 family; aldo/keto reductase 643696 4251788 Shewmr4_0560 Shewanella sp. MR-4 aldo/keto reductase YP_732697.1 642806 R 60480 CDS YP_732698.1 113968905 4251789 643936..645648 1 NC_008321.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 645648 4251789 Shewmr4_0561 Shewanella sp. MR-4 formate--tetrahydrofolate ligase YP_732698.1 643936 D 60480 CDS YP_732699.1 113968906 4251790 complement(645728..647383) 1 NC_008321.1 PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0560.2 hypothetical small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 647383 4251790 Shewmr4_0562 Shewanella sp. MR-4 mechanosensitive ion channel protein MscS YP_732699.1 645728 R 60480 CDS YP_732700.1 113968907 4251126 647605..647934 1 NC_008321.1 KEGG: son:SO0562 hypothetical protein; hypothetical protein 647934 4251126 Shewmr4_0563 Shewanella sp. MR-4 hypothetical protein YP_732700.1 647605 D 60480 CDS YP_732701.1 113968908 4251127 complement(648015..648140) 1 NC_008321.1 KEGG: son:SO0563 hypothetical protein; hypothetical protein 648140 4251127 Shewmr4_0564 Shewanella sp. MR-4 hypothetical protein YP_732701.1 648015 R 60480 CDS YP_732702.1 113968909 4251128 648397..648687 1 NC_008321.1 KEGG: sdn:Sden_0526 hypothetical protein; hypothetical protein 648687 4251128 Shewmr4_0565 Shewanella sp. MR-4 hypothetical protein YP_732702.1 648397 D 60480 CDS YP_732703.1 113968910 4251129 648769..649950 1 NC_008321.1 KEGG: son:SO0564 hypothetical protein; hypothetical protein 649950 4251129 Shewmr4_0566 Shewanella sp. MR-4 hypothetical protein YP_732703.1 648769 D 60480 CDS YP_732704.1 113968911 4251130 649934..650842 1 NC_008321.1 PFAM: periplasmic solute binding protein; KEGG: son:SO0565 adhesion protein, putative; periplasmic solute binding protein 650842 4251130 Shewmr4_0567 Shewanella sp. MR-4 periplasmic solute binding protein YP_732704.1 649934 D 60480 CDS YP_732705.1 113968912 4251131 650847..651614 1 NC_008321.1 PFAM: ABC-3 protein; KEGG: son:SO0566 ABC 3 transport family protein; ABC-3 protein 651614 4251131 Shewmr4_0568 Shewanella sp. MR-4 ABC-3 protein YP_732705.1 650847 D 60480 CDS YP_732706.1 113968913 4251132 651771..652553 1 NC_008321.1 KEGG: son:SO0567 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 652553 4251132 Shewmr4_0569 Shewanella sp. MR-4 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_732706.1 651771 D 60480 CDS YP_732707.1 113968914 4251133 652597..653004 1 NC_008321.1 PFAM: protein of unknown function DUF1260; KEGG: son:SO0568 hypothetical protein; hypothetical protein 653004 4251133 Shewmr4_0570 Shewanella sp. MR-4 hypothetical protein YP_732707.1 652597 D 60480 CDS YP_732708.1 113968915 4251134 complement(653058..654032) 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO0569 sensory box/GGDEF family protein; diguanylate cyclase 654032 4251134 Shewmr4_0571 Shewanella sp. MR-4 diguanylate cyclase YP_732708.1 653058 R 60480 CDS YP_732709.1 113968916 4251135 complement(654051..655046) 1 NC_008321.1 PFAM: response regulator receiver; KEGG: son:SO0570 response regulator; response regulator receiver protein 655046 4251135 Shewmr4_0572 Shewanella sp. MR-4 response regulator receiver protein YP_732709.1 654051 R 60480 CDS YP_732710.1 113968917 4251136 655625..656431 1 NC_008321.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 656431 4251136 Shewmr4_0573 Shewanella sp. MR-4 enoyl-CoA hydratase YP_732710.1 655625 D 60480 CDS YP_732711.1 113968918 4251137 complement(656496..657509) 1 NC_008321.1 KEGG: son:SO0573 hypothetical protein; hypothetical protein 657509 4251137 Shewmr4_0574 Shewanella sp. MR-4 hypothetical protein YP_732711.1 656496 R 60480 CDS YP_732712.1 113968919 4251138 complement(657747..660653) 1 NC_008321.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 660653 4251138 Shewmr4_0575 Shewanella sp. MR-4 ATP-dependent helicase HepA YP_732712.1 657747 R 60480 CDS YP_732713.1 113968920 4251139 661056..662450 1 NC_008321.1 PFAM: PhoH family protein; SMART: AAA ATPase; Nucleotide binding protein, PINc; KEGG: son:SO0576 PhoH family protein; PhoH family protein 662450 4251139 Shewmr4_0576 Shewanella sp. MR-4 PhoH family protein YP_732713.1 661056 D 60480 CDS YP_732714.1 113968921 4251140 662671..666381 1 NC_008321.1 KEGG: son:SO0577 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Cache domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 666381 4251140 Shewmr4_0577 Shewanella sp. MR-4 multi-sensor hybrid histidine kinase YP_732714.1 662671 D 60480 CDS YP_732715.1 113968922 4251141 666465..668867 1 NC_008321.1 KEGG: son:SO0578 hypothetical protein; hypothetical protein 668867 4251141 Shewmr4_0578 Shewanella sp. MR-4 hypothetical protein YP_732715.1 666465 D 60480 CDS YP_732716.1 113968923 4251142 complement(668908..670716) 1 NC_008321.1 PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: son:SO0579 serine/threonine protein kinase, putative; serine/threonine protein kinase 670716 4251142 Shewmr4_0579 Shewanella sp. MR-4 serine/threonine protein kinase YP_732716.1 668908 R 60480 CDS YP_732717.1 113968924 4251143 670966..671304 1 NC_008321.1 KEGG: son:SO0581 hypothetical protein; hypothetical protein 671304 4251143 Shewmr4_0580 Shewanella sp. MR-4 hypothetical protein YP_732717.1 670966 D 60480 CDS YP_732718.1 113968925 4251704 671412..672068 1 NC_008321.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 672068 4251704 Shewmr4_0581 Shewanella sp. MR-4 thiopurine S-methyltransferase YP_732718.1 671412 D 60480 CDS YP_732719.1 113968926 4251705 complement(672268..672459) 1 NC_008321.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: son:SO0583 bacterioferritin-associated ferredoxin; BFD/(2Fe-2S)-binding domain-containing protein 672459 4251705 Shewmr4_0582 Shewanella sp. MR-4 BFD/(2Fe-2S)-binding domain-containing protein YP_732719.1 672268 R 60480 CDS YP_732720.1 113968927 4251706 672707..674281 1 NC_008321.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: son:SO0584 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 674281 4251706 Shewmr4_0583 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_732720.1 672707 D 60480 CDS YP_732721.1 113968928 4251707 complement(674366..675301) 1 NC_008321.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO0585 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 675301 4251707 Shewmr4_0584 Shewanella sp. MR-4 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_732721.1 674366 R 60480 CDS YP_732722.1 113968929 4251708 675392..675727 1 NC_008321.1 KEGG: son:SO0586 hypothetical protein; hypothetical protein 675727 4251708 Shewmr4_0585 Shewanella sp. MR-4 hypothetical protein YP_732722.1 675392 D 60480 CDS YP_732723.1 113968930 4251709 complement(675751..676473) 1 NC_008321.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: son:SO0587 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 676473 4251709 Shewmr4_0586 Shewanella sp. MR-4 glycerophosphoryl diester phosphodiesterase YP_732723.1 675751 R 60480 CDS YP_732724.1 113968931 4251710 complement(676489..679692) 1 NC_008321.1 PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0588 transporter, putative; mechanosensitive ion channel protein MscS 679692 4251710 Shewmr4_0587 Shewanella sp. MR-4 mechanosensitive ion channel protein MscS YP_732724.1 676489 R 60480 CDS YP_732725.1 113968932 4251711 complement(679761..680645) 1 NC_008321.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_3514 membrane protein; hypothetical protein 680645 4251711 Shewmr4_0588 Shewanella sp. MR-4 hypothetical protein YP_732725.1 679761 R 60480 CDS YP_732726.1 113968933 4251712 complement(680663..681541) 1 NC_008321.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 681541 psd 4251712 psd Shewanella sp. MR-4 phosphatidylserine decarboxylase YP_732726.1 680663 R 60480 CDS YP_732727.1 113968934 4251713 complement(681625..682689) 1 NC_008321.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 682689 4251713 Shewmr4_0590 Shewanella sp. MR-4 ribosome-associated GTPase YP_732727.1 681625 R 60480 CDS YP_732728.1 113968935 4251714 682802..683347 1 NC_008321.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 683347 4251714 Shewmr4_0591 Shewanella sp. MR-4 oligoribonuclease YP_732728.1 682802 D 60480 CDS YP_732729.1 113968936 4251715 684518..684973 1 NC_008321.1 KEGG: son:SO0595 hypothetical protein; hypothetical protein 684973 4251715 Shewmr4_0592 Shewanella sp. MR-4 hypothetical protein YP_732729.1 684518 D 60480 CDS YP_732730.1 113968937 4251716 685218..686717 1 NC_008321.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: son:SO0598 YjeF protein; carbohydrate kinase, YjeF related protein 686717 4251716 Shewmr4_0593 Shewanella sp. MR-4 carbohydrate kinase, YjeF related protein YP_732730.1 685218 D 60480 CDS YP_732731.1 113968938 4251717 686797..687255 1 NC_008321.1 PFAM: protein of unknown function UPF0079; KEGG: son:SO0599 conserved hypothetical protein TIGR00150; hypothetical protein 687255 4251717 Shewmr4_0594 Shewanella sp. MR-4 hypothetical protein YP_732731.1 686797 D 60480 CDS YP_732732.1 113968939 4251718 687264..688652 1 NC_008321.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: son:SO0600 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 688652 4251718 Shewmr4_0595 Shewanella sp. MR-4 N-acetylmuramoyl-L-alanine amidase YP_732732.1 687264 D 60480 CDS YP_732733.1 113968940 4251719 688666..690600 1 NC_008321.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 690600 mutL 4251719 mutL Shewanella sp. MR-4 DNA mismatch repair protein YP_732733.1 688666 D 60480 CDS YP_732734.1 113968941 4251720 690629..691519 1 NC_008321.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 691519 miaA 4251720 miaA Shewanella sp. MR-4 tRNA delta(2)-isopentenylpyrophosphate transferase YP_732734.1 690629 D 60480 CDS YP_732735.1 113968942 4251179 691612..691884 1 NC_008321.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: son:SO0603 host factor-I protein; RNA-binding protein Hfq 691884 4251179 Shewmr4_0598 Shewanella sp. MR-4 RNA-binding protein Hfq YP_732735.1 691612 D 60480 CDS YP_732736.1 113968943 4251180 691909..693216 1 NC_008321.1 PFAM: GTP-binding protein, HSR1-related; KEGG: son:SO0604 GTP-binding protein HflX; GTP-binding protein, HSR1-related 693216 4251180 Shewmr4_0599 Shewanella sp. MR-4 GTP-binding protein, HSR1-related YP_732736.1 691909 D 60480 CDS YP_732737.1 113968944 4251181 693253..694398 1 NC_008321.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: son:SO0605 hflK protein; HflK protein 694398 4251181 Shewmr4_0600 Shewanella sp. MR-4 HflK protein YP_732737.1 693253 D 60480 CDS YP_732738.1 113968945 4251182 694402..695295 1 NC_008321.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: son:SO0606 hflC protein; HflC protein 695295 4251182 Shewmr4_0601 Shewanella sp. MR-4 HflC protein YP_732738.1 694402 D 60480 CDS YP_732739.1 113968946 4251183 695666..696256 1 NC_008321.1 KEGG: son:SO0608 ubiquinol-cytochrome c reductase iron-sulfur subunit; TIGRFAM: Twin-arginine translocation pathway signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 696256 4251183 Shewmr4_0602 Shewanella sp. MR-4 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_732739.1 695666 D 60480 CDS YP_732740.1 113968947 4251184 696256..697470 1 NC_008321.1 PFAM: Cytochrome b/b6, N-terminal domain protein; Cytochrome b/b6, C-terminal domain protein; KEGG: son:SO0609 ubiquinol-cytochrome c reductase, cytochrome b; cytochrome b/b6 domain-containing protein 697470 4251184 Shewmr4_0603 Shewanella sp. MR-4 cytochrome b/b6 domain-containing protein YP_732740.1 696256 D 60480 CDS YP_732741.1 113968948 4251185 697470..698168 1 NC_008321.1 PFAM: cytochrome c1; KEGG: son:SO0610 ubiquinol-cytochrome c reductase cytochrome c1 subunit; cytochrome c1 698168 4251185 Shewmr4_0604 Shewanella sp. MR-4 cytochrome c1 YP_732741.1 697470 D 60480 CDS YP_732742.1 113968949 4251186 698265..698894 1 NC_008321.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 698894 sspA 4251186 sspA Shewanella sp. MR-4 stringent starvation protein A YP_732742.1 698265 D 60480 CDS YP_732743.1 113968950 4251187 698894..699331 1 NC_008321.1 PFAM: Stringent starvation protein B; KEGG: son:SO0612 stringent starvation protein b; ClpXP protease specificity-enhancing factor 699331 4251187 Shewmr4_0606 Shewanella sp. MR-4 ClpXP protease specificity-enhancing factor YP_732743.1 698894 D 60480 CDS YP_732744.1 113968951 4251188 699488..700099 1 NC_008321.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: son:SO0613 para-aminobenzoate synthase glutamine amidotransferase, component II; aminodeoxychorismate synthase, glutamine amidotransferase subunit 700099 4251188 Shewmr4_0607 Shewanella sp. MR-4 aminodeoxychorismate synthase, glutamine amidotransferase subunit YP_732744.1 699488 D 60480 CDS YP_732745.1 113968952 4251189 700330..702810 1 NC_008321.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: son:SO0614 dipeptidyl peptidase IV, putative; peptidase S9 prolyl oligopeptidase 702810 4251189 Shewmr4_0608 Shewanella sp. MR-4 peptidase S9 prolyl oligopeptidase YP_732745.1 700330 D 60480 CDS YP_732746.1 113968953 4251190 703010..704155 1 NC_008321.1 KEGG: son:SO0615 hypothetical protein; putative signal transduction protein 704155 4251190 Shewmr4_0609 Shewanella sp. MR-4 putative signal transduction protein YP_732746.1 703010 D 60480 CDS YP_732747.1 113968954 4251191 704211..705122 1 NC_008321.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: son:SO0616 esterase, putative; alpha/beta hydrolase domain-containing protein 705122 4251191 Shewmr4_0610 Shewanella sp. MR-4 alpha/beta hydrolase domain-containing protein YP_732747.1 704211 D 60480 CDS YP_732748.1 113968955 4251192 705431..706648 1 NC_008321.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 706648 argD 4251192 argD Shewanella sp. MR-4 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_732748.1 705431 D 60480 CDS YP_732749.1 113968956 4251193 706776..707795 1 NC_008321.1 PFAM: arginine N-succinyltransferase beta subunit; KEGG: son:SO0618 arginine N-succinyltransferase; arginine succinyltransferase 707795 4251193 Shewmr4_0612 Shewanella sp. MR-4 arginine succinyltransferase YP_732749.1 706776 D 60480 CDS YP_732750.1 113968957 4251194 707805..709268 1 NC_008321.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 709268 astD 4251194 astD Shewanella sp. MR-4 succinylglutamic semialdehyde dehydrogenase YP_732750.1 707805 D 60480 CDS YP_732751.1 113968958 4251195 709433..710236 1 NC_008321.1 KEGG: son:SO0620 hypothetical protein; hypothetical protein 710236 4251195 Shewmr4_0614 Shewanella sp. MR-4 hypothetical protein YP_732751.1 709433 D 60480 CDS YP_732752.1 113968959 4251196 complement(710367..711695) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0621 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 711695 4251196 Shewmr4_0615 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_732752.1 710367 R 60480 CDS YP_732753.1 113968960 4251513 complement(711692..712366) 1 NC_008321.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO0622 DNA-binding response regulator; two component transcriptional regulator 712366 4251513 Shewmr4_0616 Shewanella sp. MR-4 two component transcriptional regulator YP_732753.1 711692 R 60480 CDS YP_732754.1 113968961 4251514 complement(712347..712694) 1 NC_008321.1 KEGG: son:SO0623 hypothetical protein; hypothetical protein 712694 4251514 Shewmr4_0617 Shewanella sp. MR-4 hypothetical protein YP_732754.1 712347 R 60480 CDS YP_732755.1 113968962 4251515 complement(712777..713412) 1 NC_008321.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 713412 4251515 Shewmr4_0618 Shewanella sp. MR-4 cAMP-regulatory protein YP_732755.1 712777 R 60480 CDS YP_732756.1 113968963 4251516 713835..714614 1 NC_008321.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO0625 hypothetical protein; Sel1 domain-containing protein 714614 4251516 Shewmr4_0619 Shewanella sp. MR-4 Sel1 domain-containing protein YP_732756.1 713835 D 60480 CDS YP_732757.1 113968964 4251517 complement(714734..715306) 1 NC_008321.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: son:SO0627 putative 2'-5' RNA ligase; 2'-5' RNA ligase 715306 4251517 Shewmr4_0620 Shewanella sp. MR-4 2'-5' RNA ligase YP_732757.1 714734 R 60480 CDS YP_732758.1 113968965 4251518 715476..717662 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO0628 GGDEF domain protein; diguanylate cyclase/phosphodiesterase 717662 4251518 Shewmr4_0621 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase YP_732758.1 715476 D 60480 CDS YP_732759.1 113968966 4251519 717869..719875 1 NC_008321.1 TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0630 TonB-dependent receptor; TonB-dependent copper receptor 719875 4251519 Shewmr4_0622 Shewanella sp. MR-4 TonB-dependent copper receptor YP_732759.1 717869 D 60480 CDS YP_732760.1 113968967 4251520 720045..722552 1 NC_008321.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent, C-terminal domain protein; KEGG: son:SO0632 ATP-dependent helicase HrpB; ATP-dependent helicase HrpB 722552 4251520 Shewmr4_0623 Shewanella sp. MR-4 ATP-dependent helicase HrpB YP_732760.1 720045 D 60480 CDS YP_732761.1 113968968 4251521 722630..724924 1 NC_008321.1 KEGG: son:SO0633 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; penicillin-binding protein 1B 724924 4251521 Shewmr4_0624 Shewanella sp. MR-4 penicillin-binding protein 1B YP_732761.1 722630 D 60480 CDS YP_732762.1 113968969 4251522 725002..725280 1 NC_008321.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO0635 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase 725280 4251522 Shewmr4_0625 Shewanella sp. MR-4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_732762.1 725002 D 60480 CDS YP_732763.1 113968970 4251523 725452..725889 1 NC_008321.1 hypothetical protein 725889 4251523 Shewmr4_0626 Shewanella sp. MR-4 hypothetical protein YP_732763.1 725452 D 60480 CDS YP_732764.1 113968971 4251524 726233..726640 1 NC_008321.1 PFAM: OsmC family protein; KEGG: vpa:VP1807 hypothetical protein; OsmC family protein 726640 4251524 Shewmr4_0627 Shewanella sp. MR-4 OsmC family protein YP_732764.1 726233 D 60480 CDS YP_732765.1 113968972 4251525 726857..727267 1 NC_008321.1 KEGG: vpa:VPA0336 hypothetical protein; hypothetical protein 727267 4251525 Shewmr4_0628 Shewanella sp. MR-4 hypothetical protein YP_732765.1 726857 D 60480 CDS YP_732766.1 113968973 4251526 727386..727616 1 NC_008321.1 KEGG: son:SO4012 hypothetical protein; hypothetical protein 727616 4251526 Shewmr4_0629 Shewanella sp. MR-4 hypothetical protein YP_732766.1 727386 D 60480 CDS YP_732767.1 113968974 4251527 complement(727685..729868) 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa2478 putative TonB-dependent receptor protein; TonB-dependent receptor 729868 4251527 Shewmr4_0630 Shewanella sp. MR-4 TonB-dependent receptor YP_732767.1 727685 R 60480 CDS YP_732768.1 113968975 4251528 730125..730826 1 NC_008321.1 KEGG: son:SO4011 hypothetical protein; hypothetical protein 730826 4251528 Shewmr4_0631 Shewanella sp. MR-4 hypothetical protein YP_732768.1 730125 D 60480 CDS YP_732769.1 113968976 4251529 complement(730982..732280) 1 NC_008321.1 KEGG: hch:HCH_03096 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 732280 4251529 Shewmr4_0632 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_732769.1 730982 R 60480 CDS YP_732770.1 113968977 4251651 complement(732536..735643) 1 NC_008321.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ppr:PBPRB0003 putative tetrathionate reductase, subunit A; molydopterin dinucleotide-binding region 735643 4251651 Shewmr4_0633 Shewanella sp. MR-4 molydopterin dinucleotide-binding region YP_732770.1 732536 R 60480 CDS YP_732771.1 113968978 4251652 complement(735706..736800) 1 NC_008321.1 PFAM: Polysulphide reductase, NrfD; KEGG: eba:ebA3056 subunit C of a molybdoprotein, similar to that of tetrathionate reductase or polysulphide reductase; polysulfide reductase, NrfD 736800 4251652 Shewmr4_0634 Shewanella sp. MR-4 polysulfide reductase, NrfD YP_732771.1 735706 R 60480 CDS YP_732772.1 113968979 4251653 complement(736790..737545) 1 NC_008321.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bpa:BPP1030 tetrathionate reductase subunit B; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 737545 4251653 Shewmr4_0635 Shewanella sp. MR-4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_732772.1 736790 R 60480 CDS YP_732773.1 113968980 4251654 737763..739811 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ppr:PBPRB0007 hypothetical histidine kinase; periplasmic sensor signal transduction histidine kinase 739811 4251654 Shewmr4_0636 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_732773.1 737763 D 60480 CDS YP_732774.1 113968981 4251655 739808..740419 1 NC_008321.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: vfi:VFA0103 two component response regulator; two component LuxR family transcriptional regulator 740419 4251655 Shewmr4_0637 Shewanella sp. MR-4 two component LuxR family transcriptional regulator YP_732774.1 739808 D 60480 CDS YP_732775.1 113968982 4251656 740646..744317 1 NC_008321.1 KEGG: son:SO4008 hypothetical protein; hypothetical protein 744317 4251656 Shewmr4_0638 Shewanella sp. MR-4 hypothetical protein YP_732775.1 740646 D 60480 CDS YP_732776.1 113968983 4251657 744317..744982 1 NC_008321.1 KEGG: son:SO4007 hypothetical protein; hypothetical protein 744982 4251657 Shewmr4_0639 Shewanella sp. MR-4 hypothetical protein YP_732776.1 744317 D 60480 CDS YP_732777.1 113968984 4251658 745025..746245 1 NC_008321.1 KEGG: son:SO4006 hypothetical protein; hypothetical protein 746245 4251658 Shewmr4_0640 Shewanella sp. MR-4 hypothetical protein YP_732777.1 745025 D 60480 CDS YP_732778.1 113968985 4251659 746233..747141 1 NC_008321.1 KEGG: son:SO4005 hypothetical protein; hypothetical protein 747141 4251659 Shewmr4_0641 Shewanella sp. MR-4 hypothetical protein YP_732778.1 746233 D 60480 CDS YP_732779.1 113968986 4251660 747496..748746 1 NC_008321.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO4004 proton/glutamate symporter, putative; sodium:dicarboxylate symporter 748746 4251660 Shewmr4_0642 Shewanella sp. MR-4 sodium:dicarboxylate symporter YP_732779.1 747496 D 60480 CDS YP_732780.1 113968987 4251661 complement(748782..749585) 1 NC_008321.1 PFAM: Integrase, catalytic region; KEGG: pcr:Pcryo_0715 Integrase, catalytic region; integrase catalytic subunit 749585 4251661 Shewmr4_0643 Shewanella sp. MR-4 integrase catalytic subunit YP_732780.1 748782 R 60480 CDS YP_732781.1 113968988 4251662 complement(749615..750010) 1 NC_008321.1 KEGG: dde:Dde_2987 transposase; transposase 750010 4251662 Shewmr4_0644 Shewanella sp. MR-4 transposase YP_732781.1 749615 R 60480 CDS YP_732782.1 113968989 4251663 complement(750111..750581) 1 NC_008321.1 hypothetical protein 750581 4251663 Shewmr4_0645 Shewanella sp. MR-4 hypothetical protein YP_732782.1 750111 R 60480 CDS YP_732783.1 113968990 4251664 complement(750990..751478) 1 NC_008321.1 PFAM: Uncharacterized protein UPF0114; KEGG: son:SO3997 hypothetical protein; hypothetical protein 751478 4251664 Shewmr4_0646 Shewanella sp. MR-4 hypothetical protein YP_732783.1 750990 R 60480 CDS YP_732784.1 113968991 4251665 complement(752186..752959) 1 NC_008321.1 hypothetical protein 752959 4251665 Shewmr4_0647 Shewanella sp. MR-4 hypothetical protein YP_732784.1 752186 R 60480 CDS YP_732785.1 113968992 4251666 complement(753102..754091) 1 NC_008321.1 PFAM: NERD domain protein; KEGG: pha:PSHAb0100 putative orphan protein; NERD domain-containing protein 754091 4251666 Shewmr4_0648 Shewanella sp. MR-4 NERD domain-containing protein YP_732785.1 753102 R 60480 CDS YP_732786.1 113968993 4251667 complement(754798..755790) 1 NC_008321.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 755790 4251667 Shewmr4_0649 Shewanella sp. MR-4 fructose-1,6-bisphosphatase YP_732786.1 754798 R 60480 CDS YP_732787.1 113968994 4251668 756086..758377 1 NC_008321.1 PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: son:SO3990 dipeptidyl peptidase IV; dipeptidyl-peptidase IV 758377 4251668 Shewmr4_0650 Shewanella sp. MR-4 dipeptidyl-peptidase IV YP_732787.1 756086 D 60480 CDS YP_732788.1 113968995 4251582 complement(758731..759447) 1 NC_008321.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO3988 aerobic respiration control protein ArcA; two-component response regulator 759447 4251582 Shewmr4_0651 Shewanella sp. MR-4 two-component response regulator YP_732788.1 758731 R 60480 CDS YP_732789.1 113968996 4251583 760034..760468 1 NC_008321.1 KEGG: son:SO3987 hypothetical protein; hypothetical protein 760468 4251583 Shewmr4_0652 Shewanella sp. MR-4 hypothetical protein YP_732789.1 760034 D 60480 CDS YP_732790.1 113968997 4251584 761028..762383 1 NC_008321.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 762383 4251584 Shewmr4_0653 Shewanella sp. MR-4 aspartate kinase III YP_732790.1 761028 D 60480 CDS YP_732791.1 113968998 4251585 762385..763500 1 NC_008321.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO3985 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 763500 4251585 Shewmr4_0654 Shewanella sp. MR-4 succinylglutamate desuccinylase/aspartoacylase YP_732791.1 762385 D 60480 CDS YP_732792.1 113968999 4251586 complement(763555..764532) 1 NC_008321.1 PFAM: Mg2 transporter protein, CorA family protein; KEGG: son:SO3984 magnesium transporter, putative; Mg2 transporter protein, CorA family protein 764532 4251586 Shewmr4_0655 Shewanella sp. MR-4 Mg2 transporter protein, CorA family protein YP_732792.1 763555 R 60480 CDS YP_732793.1 113969000 4251587 764701..765075 1 NC_008321.1 PFAM: Uncharacterized conserved protein UCP006287; KEGG: son:SO3983 hypothetical protein; hypothetical protein 765075 4251587 Shewmr4_0656 Shewanella sp. MR-4 hypothetical protein YP_732793.1 764701 D 60480 CDS YP_732794.1 113969001 4251588 complement(765165..765794) 1 NC_008321.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: son:SO3982 DNA-binding nitrate/nitrite response regulator; two component LuxR family transcriptional regulator 765794 4251588 Shewmr4_0657 Shewanella sp. MR-4 two component LuxR family transcriptional regulator YP_732794.1 765165 R 60480 CDS YP_732795.1 113969002 4251589 complement(765787..767583) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: son:SO3981 nitrate/nitrite sensor protein NarQ; nitrate/nitrite sensor protein NarQ 767583 4251589 Shewmr4_0658 Shewanella sp. MR-4 nitrate/nitrite sensor protein NarQ YP_732795.1 765787 R 60480 CDS YP_732796.1 113969003 4251590 767809..769230 1 NC_008321.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 769230 nrfA 4251590 nrfA Shewanella sp. MR-4 cytochrome c552 YP_732796.1 767809 D 60480 CDS YP_732797.1 113969004 4251591 complement(769381..771315) 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: vvy:VVA0651 GGDEF family protein; diguanylate cyclase/phosphodiesterase with GAF sensor 771315 4251591 Shewmr4_0660 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase with GAF sensor YP_732797.1 769381 R 60480 CDS YP_732798.1 113969005 4251592 771521..772291 1 NC_008321.1 KEGG: son:SO3975 hypothetical protein; hypothetical protein 772291 4251592 Shewmr4_0661 Shewanella sp. MR-4 hypothetical protein YP_732798.1 771521 D 60480 CDS YP_732799.1 113969006 4251593 complement(772344..772892) 1 NC_008321.1 KEGG: son:SO3974 hypothetical protein; hypothetical protein 772892 4251593 Shewmr4_0662 Shewanella sp. MR-4 hypothetical protein YP_732799.1 772344 R 60480 CDS YP_732800.1 113969007 4251594 773093..773434 1 NC_008321.1 hypothetical protein 773434 4251594 Shewmr4_0663 Shewanella sp. MR-4 hypothetical protein YP_732800.1 773093 D 60480 CDS YP_732801.1 113969008 4251595 773705..774562 1 NC_008321.1 PFAM: protein of unknown function RIO1; KEGG: son:SO3973 RIO1/ZK632.3/MJ0444 family, putative; hypothetical protein 774562 4251595 Shewmr4_0664 Shewanella sp. MR-4 hypothetical protein YP_732801.1 773705 D 60480 CDS YP_732802.1 113969009 4251596 complement(775291..775524) 1 NC_008321.1 PFAM: transposase IS3/IS911 family protein; KEGG: son:SO3972 hypothetical transposase; transposase IS3/IS911 family protein 775524 4251596 Shewmr4_0665 Shewanella sp. MR-4 transposase IS3/IS911 family protein YP_732802.1 775291 R 60480 CDS YP_732803.1 113969010 4251597 776180..776872 1 NC_008321.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: son:SO3969 OmpA family protein; OmpA/MotB domain-containing protein 776872 4251597 Shewmr4_0666 Shewanella sp. MR-4 OmpA/MotB domain-containing protein YP_732803.1 776180 D 60480 CDS YP_732804.1 113969011 4251598 777112..777939 1 NC_008321.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: son:SO3967 hypothetical protein; molybdate ABC transporter periplasmic molybdate-binding protein 777939 4251598 Shewmr4_0667 Shewanella sp. MR-4 molybdate ABC transporter periplasmic molybdate-binding protein YP_732804.1 777112 D 60480 CDS YP_732805.1 113969012 4251879 complement(778276..779640) 1 NC_008321.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO3966 magnesium transporter; magnesium transporter 779640 4251879 Shewmr4_0668 Shewanella sp. MR-4 magnesium transporter YP_732805.1 778276 R 60480 CDS YP_732806.1 113969013 4251880 complement(779852..780127) 1 NC_008321.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: son:SO3965 phosphocarrier protein NPR; HPr family phosphocarrier protein 780127 4251880 Shewmr4_0669 Shewanella sp. MR-4 HPr family phosphocarrier protein YP_732806.1 779852 R 60480 CDS YP_732807.1 113969014 4251881 complement(780114..780968) 1 NC_008321.1 PFAM: Uncharacterized P-loop ATPase protein UPF0042; KEGG: son:SO3964 hypothetical protein; hypothetical protein 780968 4251881 Shewmr4_0670 Shewanella sp. MR-4 hypothetical protein YP_732807.1 780114 R 60480 CDS YP_732808.1 113969015 4251882 complement(780965..781408) 1 NC_008321.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: son:SO3963 nitrogen regulatory IIA protein; PTS IIA-like nitrogen-regulatory protein PtsN 781408 4251882 Shewmr4_0671 Shewanella sp. MR-4 PTS IIA-like nitrogen-regulatory protein PtsN YP_732808.1 780965 R 60480 CDS YP_732809.1 113969016 4251883 complement(781411..781698) 1 NC_008321.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3962 ribosomal subunit interface protein; sigma 54 modulation protein / SSU ribosomal protein S30P 781698 4251883 Shewmr4_0672 Shewanella sp. MR-4 sigma 54 modulation protein / SSU ribosomal protein S30P YP_732809.1 781411 R 60480 CDS YP_732810.1 113969017 4251884 complement(781727..783202) 1 NC_008321.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 783202 4251884 Shewmr4_0673 Shewanella sp. MR-4 RNA polymerase factor sigma-54 YP_732810.1 781727 R 60480 CDS YP_732811.1 113969018 4251885 complement(783309..784040) 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3960 ABC transporter, ATP-binding protein; ABC transporter-like protein 784040 4251885 Shewmr4_0674 Shewanella sp. MR-4 ABC transporter-like protein YP_732811.1 783309 R 60480 CDS YP_732812.1 113969019 4251886 complement(784037..784588) 1 NC_008321.1 PFAM: OstA family protein; KEGG: son:SO3959 hypothetical protein; OstA family protein 784588 4251886 Shewmr4_0675 Shewanella sp. MR-4 OstA family protein YP_732812.1 784037 R 60480 CDS YP_732813.1 113969020 4251887 complement(784575..785135) 1 NC_008321.1 PFAM: protein of unknown function DUF1239; KEGG: son:SO3958 hypothetical protein; hypothetical protein 785135 4251887 Shewmr4_0676 Shewanella sp. MR-4 hypothetical protein YP_732813.1 784575 R 60480 CDS YP_732814.1 113969021 4251888 complement(785132..785683) 1 NC_008321.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 785683 4251888 Shewmr4_0677 Shewanella sp. MR-4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_732814.1 785132 R 60480 CDS YP_732815.1 113969022 4251889 complement(785683..786660) 1 NC_008321.1 KEGG: son:SO3956 carbohydrate isomerase, KpsF/GutQ family; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 786660 4251889 Shewmr4_0678 Shewanella sp. MR-4 KpsF/GutQ family protein YP_732815.1 785683 R 60480 CDS YP_732816.1 113969023 4251890 787221..788039 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3954 ABC transporter, ATP-binding protein, putative; ABC transporter-like protein 788039 4251890 Shewmr4_0679 Shewanella sp. MR-4 ABC transporter-like protein YP_732816.1 787221 D 60480 CDS YP_732817.1 113969024 4251891 788036..788821 1 NC_008321.1 PFAM: protein of unknown function DUF140; KEGG: son:SO3953 putative membrane protein; hypothetical protein 788821 4251891 Shewmr4_0680 Shewanella sp. MR-4 hypothetical protein YP_732817.1 788036 D 60480 CDS YP_732818.1 113969025 4251892 788876..789349 1 NC_008321.1 PFAM: Mammalian cell entry related domain protein; KEGG: son:SO3952 mce-related protein; hypothetical protein 789349 4251892 Shewmr4_0681 Shewanella sp. MR-4 hypothetical protein YP_732818.1 788876 D 60480 CDS YP_732819.1 113969026 4251893 789361..790014 1 NC_008321.1 PFAM: toluene tolerance family protein; KEGG: son:SO3951 hypothetical protein; toluene tolerance family protein 790014 4251893 Shewmr4_0682 Shewanella sp. MR-4 toluene tolerance family protein YP_732819.1 789361 D 60480 CDS YP_732820.1 113969027 4251894 790020..790304 1 NC_008321.1 KEGG: son:SO3950 SpoIIAA family protein; SpoIIAA family protein 790304 4251894 Shewmr4_0683 Shewanella sp. MR-4 SpoIIAA family protein YP_732820.1 790020 D 60480 CDS YP_732821.1 113969028 4251895 790321..790572 1 NC_008321.1 PFAM: BolA family protein; KEGG: son:SO3949 BolA/YrbA family protein; BolA family protein 790572 4251895 Shewmr4_0684 Shewanella sp. MR-4 BolA family protein YP_732821.1 790321 D 60480 CDS YP_732822.1 113969029 4251896 790585..791844 1 NC_008321.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 791844 4251896 Shewmr4_0685 Shewanella sp. MR-4 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_732822.1 790585 D 60480 CDS YP_732823.1 113969030 4251530 complement(793478..793810) 1 NC_008321.1 PFAM: protein of unknown function DUF469; KEGG: vvu:VV20828 hypothetical protein; hypothetical protein 793810 4251530 Shewmr4_0686 Shewanella sp. MR-4 hypothetical protein YP_732823.1 793478 R 60480 CDS YP_732824.1 113969031 4251531 complement(794156..795217) 1 NC_008321.1 PFAM: methyltransferase small; Methyltransferase small, N-terminal domain protein; KEGG: son:SO0828 ribosomal RNA small subunit methyltransferase C; 16S rRNA m(2)G 1207 methyltransferase 795217 4251531 Shewmr4_0687 Shewanella sp. MR-4 16S rRNA m(2)G 1207 methyltransferase YP_732824.1 794156 R 60480 CDS YP_732825.1 113969032 4251532 complement(795372..796784) 1 NC_008321.1 PFAM: Alkaline phosphatase; KEGG: son:SO0830 alkaline phosphatase; alkaline phosphatase 796784 4251532 Shewmr4_0688 Shewanella sp. MR-4 alkaline phosphatase YP_732825.1 795372 R 60480 CDS YP_732826.1 113969033 4251533 complement(796858..797805) 1 NC_008321.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 797805 4251533 Shewmr4_0689 Shewanella sp. MR-4 glutathione synthetase YP_732826.1 796858 R 60480 CDS YP_732827.1 113969034 4251534 complement(797914..798645) 1 NC_008321.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 798645 4251534 Shewmr4_0690 Shewanella sp. MR-4 16S ribosomal RNA methyltransferase RsmE YP_732827.1 797914 R 60480 CDS YP_732828.1 113969035 4251535 complement(798654..799427) 1 NC_008321.1 PFAM: Endonuclease I; KEGG: son:SO0833 endonuclease I; deoxyribonuclease I 799427 4251535 Shewmr4_0691 Shewanella sp. MR-4 deoxyribonuclease I YP_732828.1 798654 R 60480 CDS YP_732829.1 113969036 4251536 complement(799557..800162) 1 NC_008321.1 PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: son:SO0834 sprT protein, putative; hypothetical protein 800162 4251536 Shewmr4_0692 Shewanella sp. MR-4 hypothetical protein YP_732829.1 799557 R 60480 CDS YP_732830.1 113969037 4251537 complement(800343..801500) 1 NC_008321.1 KEGG: son:SO0835 hypothetical protein; hypothetical protein 801500 4251537 Shewmr4_0693 Shewanella sp. MR-4 hypothetical protein YP_732830.1 800343 R 60480 CDS YP_732831.1 113969038 4251538 801850..802647 1 NC_008321.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: son:SO0837 beta-lactamase, putative; Beta-lactamase 802647 4251538 Shewmr4_0694 Shewanella sp. MR-4 Beta-lactamase YP_732831.1 801850 D 60480 CDS YP_732832.1 113969039 4251539 complement(802954..803865) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0839 transcriptional regulator, LysR family; LysR family transcriptional regulator 803865 4251539 Shewmr4_0695 Shewanella sp. MR-4 LysR family transcriptional regulator YP_732832.1 802954 R 60480 CDS YP_732833.1 113969040 4251540 803988..808541 1 NC_008321.1 PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase; carbamoyl-phosphate synthase L chain, ATP-binding 808541 4251540 Shewmr4_0696 Shewanella sp. MR-4 carbamoyl-phosphate synthase L chain, ATP-binding YP_732833.1 803988 D 60480 CDS YP_732834.1 113969041 4251541 808736..810184 1 NC_008321.1 KEGG: son:SO0841 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3; diguanylate cyclase 810184 4251541 Shewmr4_0697 Shewanella sp. MR-4 diguanylate cyclase YP_732834.1 808736 D 60480 CDS YP_732835.1 113969042 4251542 810634..812727 1 NC_008321.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 812727 4251542 Shewmr4_0698 Shewanella sp. MR-4 elongation factor G YP_732835.1 810634 D 60480 CDS YP_732836.1 113969043 4251543 complement(812856..813743) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0843 transcriptional regulator, LysR family; LysR family transcriptional regulator 813743 4251543 Shewmr4_0699 Shewanella sp. MR-4 LysR family transcriptional regulator YP_732836.1 812856 R 60480 CDS YP_732837.1 113969044 4251544 813838..813990 1 NC_008321.1 KEGG: son:SO0844 hypothetical protein; hypothetical protein 813990 4251544 Shewmr4_0700 Shewanella sp. MR-4 hypothetical protein YP_732837.1 813838 D 60480 CDS YP_732838.1 113969045 4251545 complement(814216..814647) 1 NC_008321.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: son:SO0845 cytochrome c-type protein NapB; periplasmic nitrate reductase subunit NapB 814647 4251545 Shewmr4_0701 Shewanella sp. MR-4 periplasmic nitrate reductase subunit NapB YP_732838.1 814216 R 60480 CDS YP_732839.1 113969046 4251546 complement(814644..815642) 1 NC_008321.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 815642 napH 4251546 napH Shewanella sp. MR-4 quinol dehydrogenase membrane component YP_732839.1 814644 R 60480 CDS YP_732840.1 113969047 4251144 complement(815639..816373) 1 NC_008321.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 816373 napG 4251144 napG Shewanella sp. MR-4 quinol dehydrogenase periplasmic component YP_732840.1 815639 R 60480 CDS YP_732841.1 113969048 4251145 complement(816425..818905) 1 NC_008321.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 818905 4251145 Shewmr4_0704 Shewanella sp. MR-4 nitrate reductase catalytic subunit YP_732841.1 816425 R 60480 CDS YP_732842.1 113969049 4251146 complement(818902..819186) 1 NC_008321.1 PFAM: NapD family protein; KEGG: son:SO0849 napD protein; NapD family protein 819186 4251146 Shewmr4_0705 Shewanella sp. MR-4 NapD family protein YP_732842.1 818902 R 60480 CDS YP_732843.1 113969050 4251147 complement(819427..821052) 1 NC_008321.1 KEGG: son:SO0850 hypothetical protein; hypothetical protein 821052 4251147 Shewmr4_0706 Shewanella sp. MR-4 hypothetical protein YP_732843.1 819427 R 60480 CDS YP_732844.1 113969051 4251148 complement(821068..821610) 1 NC_008321.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO0851 hypothetical protein; prepilin-type cleavage/methylation-like protein 821610 4251148 Shewmr4_0707 Shewanella sp. MR-4 prepilin-type cleavage/methylation-like protein YP_732844.1 821068 R 60480 CDS YP_732845.1 113969052 4251149 complement(821613..822011) 1 NC_008321.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO0852 type IV pilus assembly protein PilV; prepilin-type cleavage/methylation-like protein 822011 4251149 Shewmr4_0708 Shewanella sp. MR-4 prepilin-type cleavage/methylation-like protein YP_732845.1 821613 R 60480 CDS YP_732846.1 113969053 4251150 complement(822011..822445) 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: son:SO0853 pilin, putative; methylation site containing protein 822445 4251150 Shewmr4_0709 Shewanella sp. MR-4 methylation site containing protein YP_732846.1 822011 R 60480 CDS YP_732847.1 113969054 4251151 complement(822447..822818) 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: son:SO0854 type IV pilin, putative; methylation site containing protein 822818 4251151 Shewmr4_0710 Shewanella sp. MR-4 methylation site containing protein YP_732847.1 822447 R 60480 CDS YP_732848.1 113969055 4251152 complement(823035..824285) 1 NC_008321.1 KEGG: son:SO0855 hypothetical protein; hypothetical protein 824285 4251152 Shewmr4_0711 Shewanella sp. MR-4 hypothetical protein YP_732848.1 823035 R 60480 CDS YP_732849.1 113969056 4251153 complement(824282..826951) 1 NC_008321.1 PFAM: protein of unknown function DUF214; KEGG: son:SO0856 putative ABC transport system permease protein; hypothetical protein 826951 4251153 Shewmr4_0712 Shewanella sp. MR-4 hypothetical protein YP_732849.1 824282 R 60480 CDS YP_732850.1 113969057 4251154 complement(826956..827627) 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0857 ABC transporter, ATP-binding protein; ABC transporter-like protein 827627 4251154 Shewmr4_0713 Shewanella sp. MR-4 ABC transporter-like protein YP_732850.1 826956 R 60480 CDS YP_732851.1 113969058 4251155 828281..829639 1 NC_008321.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO0858 sodium:alanine symporter family protein; amino acid carrier protein 829639 4251155 Shewmr4_0714 Shewanella sp. MR-4 amino acid carrier protein YP_732851.1 828281 D 60480 CDS YP_732852.1 113969059 4251156 829768..835071 1 NC_008321.1 KEGG: son:SO0859 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 835071 4251156 Shewmr4_0715 Shewanella sp. MR-4 multi-sensor hybrid histidine kinase YP_732852.1 829768 D 60480 CDS YP_732853.1 113969060 4251157 835137..836153 1 NC_008321.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO0860 response regulator; response regulator receiver modulated metal dependent phosphohydrolase 836153 4251157 Shewmr4_0716 Shewanella sp. MR-4 response regulator receiver modulated metal dependent phosphohydrolase YP_732853.1 835137 D 60480 CDS YP_732854.1 113969061 4251158 complement(836217..837173) 1 NC_008321.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: son:SO0861 hypothetical protein; glycine cleavage T protein (aminomethyl transferase) 837173 4251158 Shewmr4_0717 Shewanella sp. MR-4 glycine cleavage T protein (aminomethyl transferase) YP_732854.1 836217 R 60480 CDS YP_732855.1 113969062 4251159 complement(837311..838540) 1 NC_008321.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 838540 4251159 Shewmr4_0718 Shewanella sp. MR-4 D-3-phosphoglycerate dehydrogenase YP_732855.1 837311 R 60480 CDS YP_732856.1 113969063 4251160 838696..839304 1 NC_008321.1 KEGG: son:SO0863 hypothetical protein; hypothetical protein 839304 4251160 Shewmr4_0719 Shewanella sp. MR-4 hypothetical protein YP_732856.1 838696 D 60480 CDS YP_732857.1 113969064 4251161 839672..840337 1 NC_008321.1 PFAM: regulatory protein, LuxR; KEGG: son:SO0864 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 840337 4251161 Shewmr4_0720 Shewanella sp. MR-4 LuxR family transcriptional regulator YP_732857.1 839672 D 60480 CDS YP_732858.1 113969065 4251757 complement(840521..842029) 1 NC_008321.1 PFAM: Curlin associated repeat protein; KEGG: son:SO0865 hypothetical protein; curlin-associated protein 842029 4251757 Shewmr4_0721 Shewanella sp. MR-4 curlin-associated protein YP_732858.1 840521 R 60480 CDS YP_732859.1 113969066 4251758 complement(842044..842463) 1 NC_008321.1 PFAM: Curlin associated repeat protein; KEGG: son:SO0866 minor curlin subunit CsgB, putative; curlin-associated protein 842463 4251758 Shewmr4_0722 Shewanella sp. MR-4 curlin-associated protein YP_732859.1 842044 R 60480 CDS YP_732860.1 113969067 4251759 842865..845372 1 NC_008321.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; PKD domain containing protein; Proprotein convertase, P; KEGG: son:SO0867 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 845372 4251759 Shewmr4_0723 Shewanella sp. MR-4 peptidase S8/S53 subtilisin kexin sedolisin YP_732860.1 842865 D 60480 CDS YP_732861.1 113969068 4251760 complement(845434..845955) 1 NC_008321.1 KEGG: son:SO0868 hypothetical protein; hypothetical protein 845955 4251760 Shewmr4_0724 Shewanella sp. MR-4 hypothetical protein YP_732861.1 845434 R 60480 CDS YP_732862.1 113969069 4251761 complement(846245..847090) 1 NC_008321.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 847090 panC 4251761 panC Shewanella sp. MR-4 pantoate--beta-alanine ligase YP_732862.1 846245 R 60480 CDS YP_732863.1 113969070 4251762 complement(847142..847936) 1 NC_008321.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 847936 panB 4251762 panB Shewanella sp. MR-4 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_732863.1 847142 R 60480 CDS YP_732864.1 113969071 4251763 complement(847993..848481) 1 NC_008321.1 KEGG: son:SO0871 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 848481 4251763 Shewmr4_0727 Shewanella sp. MR-4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_732864.1 847993 R 60480 CDS YP_732865.1 113969072 4251764 complement(848481..849788) 1 NC_008321.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: son:SO0872 tRNA nucleotidyltransferase (CCA-adding enzyme); poly(A) polymerase 849788 4251764 Shewmr4_0728 Shewanella sp. MR-4 poly(A) polymerase YP_732865.1 848481 R 60480 CDS YP_732866.1 113969073 4251765 complement(850071..850970) 1 NC_008321.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: son:SO0873 glutamyl-tRNA synthetase domain protein; glutamyl-tRNA synthetase, class Ic 850970 4251765 Shewmr4_0729 Shewanella sp. MR-4 glutamyl-tRNA synthetase, class Ic YP_732866.1 850071 R 60480 CDS YP_732867.1 113969074 4251766 complement(851106..851549) 1 NC_008321.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: son:SO0874 DnaK suppressor protein; TraR/DksA family transcriptional regulator 851549 4251766 Shewmr4_0730 Shewanella sp. MR-4 TraR/DksA family transcriptional regulator YP_732867.1 851106 R 60480 CDS YP_732868.1 113969075 4251767 complement(851713..852417) 1 NC_008321.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 852417 4251767 Shewmr4_0731 Shewanella sp. MR-4 sugar fermentation stimulation protein A YP_732868.1 851713 R 60480 CDS YP_732869.1 113969076 4251768 852649..853941 1 NC_008321.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 853941 4251768 Shewmr4_0732 Shewanella sp. MR-4 aminopeptidase B YP_732869.1 852649 D 60480 CDS YP_732870.1 113969077 4251769 854120..854629 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0877 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 854629 4251769 Shewmr4_0733 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_732870.1 854120 D 60480 CDS YP_732871.1 113969078 4251770 complement(855168..856055) 1 NC_008321.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: son:SO0878 phosphoribulokinase; phosphoribulokinase 856055 4251770 Shewmr4_0734 Shewanella sp. MR-4 phosphoribulokinase YP_732871.1 855168 R 60480 CDS YP_732872.1 113969079 4251771 complement(856144..856389) 1 NC_008321.1 PFAM: protein of unknown function UPF0270; KEGG: son:SO0879 hypothetical protein; hypothetical protein 856389 4251771 Shewmr4_0735 Shewanella sp. MR-4 hypothetical protein YP_732872.1 856144 R 60480 CDS YP_732873.1 113969080 4251772 complement(856399..857382) 1 NC_008321.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO0880 hypothetical protein; alpha/beta hydrolase fold domain-containing protein 857382 4251772 Shewmr4_0736 Shewanella sp. MR-4 alpha/beta hydrolase fold domain-containing protein YP_732873.1 856399 R 60480 CDS YP_732874.1 113969081 4251773 857494..858000 1 NC_008321.1 KEGG: son:SO0881 hypothetical protein; hypothetical protein 858000 4251773 Shewmr4_0737 Shewanella sp. MR-4 hypothetical protein YP_732874.1 857494 D 60480 CDS YP_732875.1 113969082 4251424 858047..859648 1 NC_008321.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: son:SO0882 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 859648 4251424 Shewmr4_0738 Shewanella sp. MR-4 glucose-methanol-choline oxidoreductase YP_732875.1 858047 D 60480 CDS YP_732876.1 113969083 4251425 859661..860071 1 NC_008321.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: son:SO0883 hypothetical protein; glutathione-dependent formaldehyde-activating, GFA 860071 4251425 Shewmr4_0739 Shewanella sp. MR-4 glutathione-dependent formaldehyde-activating, GFA YP_732876.1 859661 D 60480 CDS YP_732877.1 113969084 4251426 complement(860088..860549) 1 NC_008321.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO0884 hypothetical protein; hypothetical protein 860549 4251426 Shewmr4_0740 Shewanella sp. MR-4 hypothetical protein YP_732877.1 860088 R 60480 CDS YP_732878.1 113969085 4251427 complement(860585..862498) 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0885 ABC transporter, ATP-binding protein; ABC transporter-like protein 862498 4251427 Shewmr4_0741 Shewanella sp. MR-4 ABC transporter-like protein YP_732878.1 860585 R 60480 CDS YP_732879.1 113969086 4251428 862890..863090 1 NC_008321.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO0886 hypothetical protein; hypothetical protein 863090 4251428 Shewmr4_0742 Shewanella sp. MR-4 hypothetical protein YP_732879.1 862890 D 60480 CDS YP_732880.1 113969087 4251429 863497..865026 1 NC_008321.1 KEGG: vvu:VV21314 chromosome segregation ATPase; chromosome segregation ATPase 865026 4251429 Shewmr4_0743 Shewanella sp. MR-4 chromosome segregation ATPase YP_732880.1 863497 D 60480 CDS YP_732881.1 113969088 4251430 865609..866466 1 NC_008321.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: son:SO0895 pirin family protein; pirin domain-containing protein 866466 4251430 Shewmr4_0744 Shewanella sp. MR-4 pirin domain-containing protein YP_732881.1 865609 D 60480 CDS YP_732882.1 113969089 4251431 866983..868359 1 NC_008321.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 868359 4251431 Shewmr4_0745 Shewanella sp. MR-4 ATP-dependent RNA helicase DbpA YP_732882.1 866983 D 60480 CDS YP_732883.1 113969090 4251432 complement(868527..868949) 1 NC_008321.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO0899 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 868949 4251432 Shewmr4_0746 Shewanella sp. MR-4 glyoxalase/bleomycin resistance protein/dioxygenase YP_732883.1 868527 R 60480 CDS YP_732884.1 113969091 4251433 complement(869072..870112) 1 NC_008321.1 PFAM: aldo/keto reductase; KEGG: son:SO0900 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 870112 4251433 Shewmr4_0747 Shewanella sp. MR-4 aldo/keto reductase YP_732884.1 869072 R 60480 CDS YP_732885.1 113969092 4251434 870578..871948 1 NC_008321.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 871948 4251434 Shewmr4_0748 Shewanella sp. MR-4 Na(+)-translocating NADH-quinone reductase subunit A YP_732885.1 870578 D 60480 CDS YP_732886.1 113969093 4251435 871948..873180 1 NC_008321.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 873180 4251435 Shewmr4_0749 Shewanella sp. MR-4 Na(+)-translocating NADH-quinone reductase subunit B YP_732886.1 871948 D 60480 CDS YP_732887.1 113969094 4251436 873170..873964 1 NC_008321.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 873964 4251436 Shewmr4_0750 Shewanella sp. MR-4 Na(+)-translocating NADH-quinone reductase subunit C YP_732887.1 873170 D 60480 CDS YP_732888.1 113969095 4251437 873961..874581 1 NC_008321.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 874581 4251437 Shewmr4_0751 Shewanella sp. MR-4 Na(+)-translocating NADH-quinone reductase subunit D YP_732888.1 873961 D 60480 CDS YP_732889.1 113969096 4251438 874591..875199 1 NC_008321.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 875199 4251438 Shewmr4_0752 Shewanella sp. MR-4 Na(+)-translocating NADH-quinone reductase subunit E YP_732889.1 874591 D 60480 CDS YP_732890.1 113969097 4251439 875251..876468 1 NC_008321.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 876468 4251439 Shewmr4_0753 Shewanella sp. MR-4 Na(+)-translocating NADH-quinone reductase subunit F YP_732890.1 875251 D 60480 CDS YP_732891.1 113969098 4251440 complement(877031..878044) 1 NC_008321.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3360 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 878044 4251440 Shewmr4_0754 Shewanella sp. MR-4 transposase IS116/IS110/IS902 family protein YP_732891.1 877031 R 60480 CDS YP_732892.1 113969099 4251441 878445..878762 1 NC_008321.1 hypothetical protein 878762 4251441 Shewmr4_0755 Shewanella sp. MR-4 hypothetical protein YP_732892.1 878445 D 60480 CDS YP_732893.1 113969100 4251267 878882..880066 1 NC_008321.1 PFAM: beta-lactamase; KEGG: son:SO0914 hypothetical protein; beta-lactamase 880066 4251267 Shewmr4_0756 Shewanella sp. MR-4 beta-lactamase YP_732893.1 878882 D 60480 CDS YP_732894.1 113969101 4251268 complement(880203..882653) 1 NC_008321.1 PFAM: Ankyrin; KEGG: son:SO0915 ankyrin domain protein; ankyrin 882653 4251268 Shewmr4_0757 Shewanella sp. MR-4 ankyrin YP_732894.1 880203 R 60480 CDS YP_732895.1 113969102 4251269 complement(882893..883915) 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; KEGG: son:SO0916 putative acetyltransferase; MarR family transcriptional regulator 883915 4251269 Shewmr4_0758 Shewanella sp. MR-4 MarR family transcriptional regulator YP_732895.1 882893 R 60480 CDS YP_732896.1 113969103 4251270 complement(883981..884520) 1 NC_008321.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 884520 4251270 Shewmr4_0759 Shewanella sp. MR-4 NTPase YP_732896.1 883981 R 60480 CDS YP_732897.1 113969104 4251271 884777..887344 1 NC_008321.1 PFAM: peptidase S45, penicillin amidase; KEGG: son:SO0918 aculeacin A acylase; peptidase S45, penicillin amidase 887344 4251271 Shewmr4_0760 Shewanella sp. MR-4 peptidase S45, penicillin amidase YP_732897.1 884777 D 60480 CDS YP_732898.1 113969105 4251272 887781..889073 1 NC_008321.1 PFAM: Amino acid transporter, transmembrane; KEGG: son:SO0919 serine transporter, putative; amino acid transporter, transmembrane 889073 4251272 Shewmr4_0761 Shewanella sp. MR-4 amino acid transporter, transmembrane YP_732898.1 887781 D 60480 CDS YP_732899.1 113969106 4251273 complement(889131..889574) 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0920 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 889574 4251273 Shewmr4_0762 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_732899.1 889131 R 60480 CDS YP_732900.1 113969107 4251274 889794..890090 1 NC_008321.1 KEGG: son:SO0921 hypothetical protein; hypothetical protein 890090 4251274 Shewmr4_0763 Shewanella sp. MR-4 hypothetical protein YP_732900.1 889794 D 60480 CDS YP_732901.1 113969108 4251275 890252..891559 1 NC_008321.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO0922 proton/glutamate symporter; sodium:dicarboxylate symporter 891559 4251275 Shewmr4_0764 Shewanella sp. MR-4 sodium:dicarboxylate symporter YP_732901.1 890252 D 60480 CDS YP_732902.1 113969109 4251276 complement(891615..892031) 1 NC_008321.1 PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: son:SO0923 hypothetical protein; hypothetical protein 892031 4251276 Shewmr4_0765 Shewanella sp. MR-4 hypothetical protein YP_732902.1 891615 R 60480 CDS YP_732903.1 113969110 4251277 892102..892335 1 NC_008321.1 KEGG: son:SO0924 hypothetical protein; hypothetical protein 892335 4251277 Shewmr4_0766 Shewanella sp. MR-4 hypothetical protein YP_732903.1 892102 D 60480 CDS YP_732904.1 113969111 4251278 complement(892349..893362) 1 NC_008321.1 KEGG: son:SO0925 GGDEF domain protein; GGDEF domain-containing protein 893362 4251278 Shewmr4_0767 Shewanella sp. MR-4 GGDEF domain-containing protein YP_732904.1 892349 R 60480 CDS YP_732905.1 113969112 4251279 893536..894078 1 NC_008321.1 KEGG: son:SO0926 acetyltransferase, GNAT family; acetyltransferase 894078 4251279 Shewmr4_0768 Shewanella sp. MR-4 acetyltransferase YP_732905.1 893536 D 60480 CDS YP_732906.1 113969113 4251280 894202..896217 1 NC_008321.1 PFAM: EAL domain protein; phosphotransferase system, EIIC; KEGG: vch:VC1211 hypothetical protein; diguanylate phosphodiesterase 896217 4251280 Shewmr4_0769 Shewanella sp. MR-4 diguanylate phosphodiesterase YP_732906.1 894202 D 60480 CDS YP_732907.1 113969114 4251281 896210..896551 1 NC_008321.1 KEGG: son:SO0927 hypothetical protein; hypothetical protein 896551 4251281 Shewmr4_0770 Shewanella sp. MR-4 hypothetical protein YP_732907.1 896210 D 60480 CDS YP_732908.1 113969115 4251282 complement(896558..897007) 1 NC_008321.1 hypothetical protein 897007 4251282 Shewmr4_0771 Shewanella sp. MR-4 hypothetical protein YP_732908.1 896558 R 60480 CDS YP_732909.1 113969116 4251283 complement(897137..898288) 1 NC_008321.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 898288 4251283 Shewmr4_0772 Shewanella sp. MR-4 S-adenosylmethionine synthetase YP_732909.1 897137 R 60480 CDS YP_732910.1 113969117 4251495 898768..900762 1 NC_008321.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 900762 4251495 Shewmr4_0773 Shewanella sp. MR-4 transketolase YP_732910.1 898768 D 60480 CDS YP_732911.1 113969118 4251496 900891..901907 1 NC_008321.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 901907 4251496 Shewmr4_0774 Shewanella sp. MR-4 erythrose 4-phosphate dehydrogenase YP_732911.1 900891 D 60480 CDS YP_732912.1 113969119 4251497 902040..903215 1 NC_008321.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 903215 pgk 4251497 pgk Shewanella sp. MR-4 phosphoglycerate kinase YP_732912.1 902040 D 60480 CDS YP_732913.1 113969120 4251498 903414..904481 1 NC_008321.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 904481 4251498 Shewmr4_0776 Shewanella sp. MR-4 fructose-1,6-bisphosphate aldolase YP_732913.1 903414 D 60480 CDS YP_732914.1 113969121 4251499 904620..905357 1 NC_008321.1 PFAM: protein of unknown function DUF481; KEGG: son:SO0934 hypothetical protein; hypothetical protein 905357 4251499 Shewmr4_0777 Shewanella sp. MR-4 hypothetical protein YP_732914.1 904620 D 60480 CDS YP_732915.1 113969122 4251500 905598..907067 1 NC_008321.1 KEGG: son:SO0935 Na+/H+ antiporter; Na+/H+ antiporter 907067 4251500 Shewmr4_0778 Shewanella sp. MR-4 Na+/H+ antiporter YP_732915.1 905598 D 60480 CDS YP_732916.1 113969123 4251501 907234..907983 1 NC_008321.1 PFAM: transcriptional regulator domain protein; KEGG: son:SO0936 transcriptional regulator; response regulator receiver protein 907983 4251501 Shewmr4_0779 Shewanella sp. MR-4 response regulator receiver protein YP_732916.1 907234 D 60480 CDS YP_732917.1 113969124 4251502 907976..908524 1 NC_008321.1 KEGG: son:SO0937 hypothetical protein; hypothetical protein 908524 4251502 Shewmr4_0780 Shewanella sp. MR-4 hypothetical protein YP_732917.1 907976 D 60480 CDS YP_732918.1 113969125 4251503 complement(908586..909110) 1 NC_008321.1 KEGG: son:SO0938 hypothetical protein; hypothetical protein 909110 4251503 Shewmr4_0781 Shewanella sp. MR-4 hypothetical protein YP_732918.1 908586 R 60480 CDS YP_732919.1 113969126 4251504 complement(909121..909945) 1 NC_008321.1 KEGG: son:SO0939 cytochrome c, putative; cytochrome c 909945 4251504 Shewmr4_0782 Shewanella sp. MR-4 cytochrome c YP_732919.1 909121 R 60480 CDS YP_732920.1 113969127 4251505 910387..911130 1 NC_008321.1 PFAM: transcriptional regulator domain protein; KEGG: son:SO0940 transcriptional regulator-related protein; lysine decarboxylase transcriptional regulator, CadC 911130 4251505 Shewmr4_0783 Shewanella sp. MR-4 lysine decarboxylase transcriptional regulator, CadC YP_732920.1 910387 D 60480 CDS YP_732921.1 113969128 4251506 911123..911653 1 NC_008321.1 KEGG: son:SO0941 hypothetical protein; hypothetical protein 911653 4251506 Shewmr4_0784 Shewanella sp. MR-4 hypothetical protein YP_732921.1 911123 D 60480 CDS YP_732922.1 113969129 4251507 911738..913138 1 NC_008321.1 KEGG: son:SO0942 hypothetical protein; hypothetical protein 913138 4251507 Shewmr4_0785 Shewanella sp. MR-4 hypothetical protein YP_732922.1 911738 D 60480 CDS YP_732923.1 113969130 4251508 complement(913119..915356) 1 NC_008321.1 KEGG: son:SO0943 sensory box protein, putative; TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 915356 4251508 Shewmr4_0786 Shewanella sp. MR-4 putative PAS/PAC sensor protein YP_732923.1 913119 R 60480 CDS YP_732924.1 113969131 4251509 complement(915490..916215) 1 NC_008321.1 PFAM: Radical SAM domain protein; KEGG: son:SO0944 hypothetical protein; radical SAM domain-containing protein 916215 4251509 Shewmr4_0787 Shewanella sp. MR-4 radical SAM domain-containing protein YP_732924.1 915490 R 60480 CDS YP_732925.1 113969132 4251510 complement(916368..919571) 1 NC_008321.1 PFAM: acriflavin resistance protein; KEGG: son:SO0945 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 919571 4251510 Shewmr4_0788 Shewanella sp. MR-4 acriflavin resistance protein YP_732925.1 916368 R 60480 CDS YP_732926.1 113969133 4251511 complement(919571..920788) 1 NC_008321.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO0946 hypothetical protein; RND family efflux transporter MFP subunit 920788 4251511 Shewmr4_0789 Shewanella sp. MR-4 RND family efflux transporter MFP subunit YP_732926.1 919571 R 60480 CDS YP_732927.1 113969134 4251512 complement(921040..922302) 1 NC_008321.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 922302 4251512 Shewmr4_0790 Shewanella sp. MR-4 ATP-dependent RNA helicase SrmB YP_732927.1 921040 R 60480 CDS YP_732928.1 113969135 4250635 922705..926061 1 NC_008321.1 KEGG: sdn:Sden_3722 ATP-binding region, ATPase-like protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MHYT domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 926061 4250635 Shewmr4_0791 Shewanella sp. MR-4 multi-sensor hybrid histidine kinase YP_732928.1 922705 D 60480 CDS YP_732929.1 113969136 4250636 926064..927059 1 NC_008321.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: sdn:Sden_3723 response regulator receiver; response regulator receiver modulated metal dependent phosphohydrolase 927059 4250636 Shewmr4_0792 Shewanella sp. MR-4 response regulator receiver modulated metal dependent phosphohydrolase YP_732929.1 926064 D 60480 CDS YP_732930.1 113969137 4250637 complement(927134..927844) 1 NC_008321.1 PFAM: methyltransferase small; KEGG: son:SO0948 hypothetical protein; methyltransferase small 927844 4250637 Shewmr4_0793 Shewanella sp. MR-4 methyltransferase small YP_732930.1 927134 R 60480 CDS YP_732931.1 113969138 4250638 928383..929786 1 NC_008321.1 TIGRFAM: branched-chain amino acid transport system II carrier protein; PFAM: branched-chain amino acid transport system II carrier protein; KEGG: son:SO0949 branched-chain amino acid transport system II carrier protein BrnQ; branched-chain amino acid transport system II carrier protein 929786 4250638 Shewmr4_0794 Shewanella sp. MR-4 branched-chain amino acid transport system II carrier protein YP_732931.1 928383 D 60480 CDS YP_732932.1 113969139 4250639 929869..930771 1 NC_008321.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO0950 integrase/recombinase XerD; tyrosine recombinase XerD 930771 4250639 Shewmr4_0795 Shewanella sp. MR-4 tyrosine recombinase XerD YP_732932.1 929869 D 60480 CDS YP_732933.1 113969140 4250640 930922..931647 1 NC_008321.1 KEGG: son:SO0951 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 931647 4250640 Shewmr4_0796 Shewanella sp. MR-4 thiol:disulfide interchange protein DsbC YP_732933.1 930922 D 60480 CDS YP_732934.1 113969141 4250641 931740..933464 1 NC_008321.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: son:SO0952 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 933464 4250641 Shewmr4_0797 Shewanella sp. MR-4 single-stranded-DNA-specific exonuclease RecJ YP_732934.1 931740 D 60480 CDS YP_732935.1 113969142 4250642 933503..933832 1 NC_008321.1 KEGG: son:SO0953 hypothetical protein; hypothetical protein 933832 4250642 Shewmr4_0798 Shewanella sp. MR-4 hypothetical protein YP_732935.1 933503 D 60480 CDS YP_732936.1 113969143 4250643 933846..934280 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0954 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 934280 4250643 Shewmr4_0799 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_732936.1 933846 D 60480 CDS YP_732937.1 113969144 4250644 complement(934744..936321) 1 NC_008321.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0956 alkyl hydroperoxide reductase, F subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 936321 4250644 Shewmr4_0800 Shewanella sp. MR-4 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_732937.1 934744 R 60480 CDS YP_732938.1 113969145 4250645 complement(936559..937128) 1 NC_008321.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO0958 alkyl hydroperoxide reductase, C subunit; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 937128 4250645 Shewmr4_0801 Shewanella sp. MR-4 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_732938.1 936559 R 60480 CDS YP_732939.1 113969146 4250646 complement(937470..939005) 1 NC_008321.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: son:SO0959 cytosol aminopeptidase; leucyl aminopeptidase 939005 4250646 Shewmr4_0802 Shewanella sp. MR-4 leucyl aminopeptidase YP_732939.1 937470 R 60480 CDS YP_732940.1 113969147 4250647 complement(939095..939838) 1 NC_008321.1 PFAM: Spermine synthase; KEGG: son:SO0960 hypothetical spermidine synthase; spermine synthase 939838 4250647 Shewmr4_0803 Shewanella sp. MR-4 spermine synthase YP_732940.1 939095 R 60480 CDS YP_732941.1 113969148 4250648 939939..940484 1 NC_008321.1 KEGG: son:SO0961 hypothetical protein; hypothetical protein 940484 4250648 Shewmr4_0804 Shewanella sp. MR-4 hypothetical protein YP_732941.1 939939 D 60480 CDS YP_732942.1 113969149 4250649 940733..941278 1 NC_008321.1 KEGG: son:SO0962 hypothetical protein; hypothetical protein 941278 4250649 Shewmr4_0805 Shewanella sp. MR-4 hypothetical protein YP_732942.1 940733 D 60480 CDS YP_732943.1 113969150 4250650 complement(941375..942112) 1 NC_008321.1 PFAM: dienelactone hydrolase; KEGG: pha:PSHAa2188 hydrolase; dienelactone hydrolase 942112 4250650 Shewmr4_0806 Shewanella sp. MR-4 dienelactone hydrolase YP_732943.1 941375 R 60480 CDS YP_732944.1 113969151 4250651 complement(942180..943169) 1 NC_008321.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO0968 D-lactate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 943169 4250651 Shewmr4_0807 Shewanella sp. MR-4 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_732944.1 942180 R 60480 CDS YP_732945.1 113969152 4250740 complement(943415..945205) 1 NC_008321.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0970 fumarate reductase flavoprotein subunit precursor; flavocytochrome c 945205 4250740 Shewmr4_0808 Shewanella sp. MR-4 flavocytochrome c YP_732945.1 943415 R 60480 CDS YP_732946.1 113969153 4250741 945710..946120 1 NC_008321.1 KEGG: son:SO0971 hypothetical protein; hypothetical protein 946120 4250741 Shewmr4_0809 Shewanella sp. MR-4 hypothetical protein YP_732946.1 945710 D 60480 CDS YP_732947.1 113969154 4250742 946117..946641 1 NC_008321.1 PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0972 hypothetical protein; type 12 methyltransferase 946641 4250742 Shewmr4_0810 Shewanella sp. MR-4 type 12 methyltransferase YP_732947.1 946117 D 60480 CDS YP_732948.1 113969155 4250743 946703..946993 1 NC_008321.1 KEGG: son:SO0973 hypothetical protein; hypothetical protein 946993 4250743 Shewmr4_0811 Shewanella sp. MR-4 hypothetical protein YP_732948.1 946703 D 60480 CDS YP_732949.1 113969156 4250744 complement(947112..947297) 1 NC_008321.1 KEGG: son:SO0974 hypothetical protein; hypothetical protein 947297 4250744 Shewmr4_0812 Shewanella sp. MR-4 hypothetical protein YP_732949.1 947112 R 60480 CDS YP_732950.1 113969157 4250745 complement(947396..948820) 1 NC_008321.1 KEGG: son:SO0975 hypothetical protein; hypothetical protein 948820 4250745 Shewmr4_0813 Shewanella sp. MR-4 hypothetical protein YP_732950.1 947396 R 60480 CDS YP_732951.1 113969158 4250746 complement(949047..949472) 1 NC_008321.1 PFAM: OsmC family protein; KEGG: son:SO0976 organic hydroperoxide resistance protein; OsmC family protein 949472 4250746 Shewmr4_0814 Shewanella sp. MR-4 OsmC family protein YP_732951.1 949047 R 60480 CDS YP_732952.1 113969159 4250747 949601..950098 1 NC_008321.1 PFAM: regulatory protein, MarR; KEGG: son:SO0977 transcriptional regulator, MarR family; MarR family transcriptional regulator 950098 4250747 Shewmr4_0815 Shewanella sp. MR-4 MarR family transcriptional regulator YP_732952.1 949601 D 60480 CDS YP_732953.1 113969160 4250748 950164..951354 1 NC_008321.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO0978 glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase 951354 4250748 Shewmr4_0816 Shewanella sp. MR-4 FAD dependent oxidoreductase YP_732953.1 950164 D 60480 CDS YP_732954.1 113969161 4250749 951534..952688 1 NC_008321.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 952688 rumB 4250749 rumB Shewanella sp. MR-4 23S rRNA methyluridine methyltransferase YP_732954.1 951534 D 60480 CDS YP_732955.1 113969162 4250750 complement(952703..953932) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0981 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 953932 4250750 Shewmr4_0818 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_732955.1 952703 R 60480 CDS YP_732956.1 113969163 4250751 complement(953944..954660) 1 NC_008321.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pha:PSHAa0853 response regulator (activator) in two-component regulatory; two component transcriptional regulator 954660 4250751 Shewmr4_0819 Shewanella sp. MR-4 two component transcriptional regulator YP_732956.1 953944 R 60480 CDS YP_732957.1 113969164 4250752 complement(954657..955076) 1 NC_008321.1 hypothetical protein 955076 4250752 Shewmr4_0820 Shewanella sp. MR-4 hypothetical protein YP_732957.1 954657 R 60480 CDS YP_732958.1 113969165 4250753 complement(955066..955908) 1 NC_008321.1 PFAM: MltA-interacting MipA family protein; KEGG: son:SO3592 putative outer membrane protein; MltA-interacting MipA family protein 955908 4250753 Shewmr4_0821 Shewanella sp. MR-4 MltA-interacting MipA family protein YP_732958.1 955066 R 60480 CDS YP_732959.1 113969166 4250754 956202..961319 1 NC_008321.1 TIGRFAM: LPXTG-motif cell wall anchor domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: son:SO4539 serine protease, subtilase family; cell wall anchor domain-containing protein 961319 4250754 Shewmr4_0822 Shewanella sp. MR-4 cell wall anchor domain-containing protein YP_732959.1 956202 D 60480 CDS YP_732960.1 113969167 4250755 961482..962654 1 NC_008321.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: son:SO0986 chromate transporter, putative; chromate transporter 962654 4250755 Shewmr4_0823 Shewanella sp. MR-4 chromate transporter YP_732960.1 961482 D 60480 CDS YP_732961.1 113969168 4250756 962790..964454 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: son:SO0987 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 964454 4250756 Shewmr4_0824 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_732961.1 962790 D 60480 CDS YP_732962.1 113969169 4250757 complement(964562..968860) 1 NC_008321.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO0988 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 968860 4250757 Shewmr4_0825 Shewanella sp. MR-4 formate dehydrogenase subunit alpha YP_732962.1 964562 R 60480 CDS YP_732963.1 113969170 4251966 969416..970474 1 NC_008321.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: sdn:Sden_3128 peptide chain release factor 2; peptide chain release factor 2 970474 4251966 Shewmr4_0826 Shewanella sp. MR-4 peptide chain release factor 2 YP_732963.1 969416 D 60480 CDS YP_732964.1 113969171 4251967 970504..972006 1 NC_008321.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 972006 lysS 4251967 lysS Shewanella sp. MR-4 lysyl-tRNA synthetase YP_732964.1 970504 D 60480 CDS YP_732965.1 113969172 4251968 972370..973326 1 NC_008321.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 973326 pbpG 4251968 pbpG Shewanella sp. MR-4 D-alanyl-D-alanine endopeptidase YP_732965.1 972370 D 60480 CDS YP_732966.1 113969173 4251969 973516..975078 1 NC_008321.1 PFAM: Rhomboid family protein; KEGG: son:SO1000 rhomboid family protein; rhomboid family protein 975078 4251969 Shewmr4_0829 Shewanella sp. MR-4 rhomboid family protein YP_732966.1 973516 D 60480 CDS YP_732967.1 113969174 4251970 complement(975171..977480) 1 NC_008321.1 KEGG: son:SO1002 hypothetical protein; hypothetical protein 977480 4251970 Shewmr4_0830 Shewanella sp. MR-4 hypothetical protein YP_732967.1 975171 R 60480 CDS YP_732968.1 113969175 4251971 complement(977641..979374) 1 NC_008321.1 PFAM: MORN variant repeat protein; KEGG: son:SO1003 hypothetical protein; MORN repeat-containing protein 979374 4251971 Shewmr4_0831 Shewanella sp. MR-4 MORN repeat-containing protein YP_732968.1 977641 R 60480 CDS YP_732969.1 113969176 4251972 complement(979384..981672) 1 NC_008321.1 KEGG: son:SO1004 hypothetical protein; hypothetical protein 981672 4251972 Shewmr4_0832 Shewanella sp. MR-4 hypothetical protein YP_732969.1 979384 R 60480 CDS YP_732970.1 113969177 4251973 981944..982906 1 NC_008321.1 KEGG: son:SO1006 dienelactone hydrolase family protein; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: dienelactone hydrolase; twin-arginine translocation pathway signal 982906 4251973 Shewmr4_0833 Shewanella sp. MR-4 twin-arginine translocation pathway signal YP_732970.1 981944 D 60480 CDS YP_732971.1 113969178 4251974 983557..985392 1 NC_008321.1 hypothetical protein 985392 4251974 Shewmr4_0834 Shewanella sp. MR-4 hypothetical protein YP_732971.1 983557 D 60480 CDS YP_732972.1 113969179 4251975 986382..986912 1 NC_008321.1 KEGG: noc:Noc_0407 hypothetical protein; hypothetical protein 986912 4251975 Shewmr4_0835 Shewanella sp. MR-4 hypothetical protein YP_732972.1 986382 D 60480 CDS YP_732973.1 113969180 4251976 986933..987355 1 NC_008321.1 hypothetical protein 987355 4251976 Shewmr4_0836 Shewanella sp. MR-4 hypothetical protein YP_732973.1 986933 D 60480 CDS YP_732974.1 113969181 4251977 987431..989365 1 NC_008321.1 KEGG: pfl:PFL_1846 hypothetical protein; hypothetical protein 989365 4251977 Shewmr4_0837 Shewanella sp. MR-4 hypothetical protein YP_732974.1 987431 D 60480 CDS YP_732975.1 113969182 4251978 complement(989734..993468) 1 NC_008321.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 993468 metH 4251978 metH Shewanella sp. MR-4 B12-dependent methionine synthase YP_732975.1 989734 R 60480 CDS YP_732976.1 113969183 4251979 993679..994401 1 NC_008321.1 PFAM: Phosphoglycerate mutase; KEGG: son:SO1031 alpha-ribazole-5'-phosphate phosphatase, putative; phosphoglycerate mutase 994401 4251979 Shewmr4_0839 Shewanella sp. MR-4 phosphoglycerate mutase YP_732976.1 993679 D 60480 CDS YP_732977.1 113969184 4251980 994874..995839 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1033 iron-compound ABC transporter, ATP-binding protein, putative; ABC transporter-like protein 995839 4251980 Shewmr4_0840 Shewanella sp. MR-4 ABC transporter-like protein YP_732977.1 994874 D 60480 CDS YP_732978.1 113969185 4251981 995836..996984 1 NC_008321.1 PFAM: transport system permease protein; KEGG: son:SO1034 iron-compound ABC transporter, permease protein; transport system permease 996984 4251981 Shewmr4_0841 Shewanella sp. MR-4 transport system permease YP_732978.1 995836 D 60480 CDS YP_732979.1 113969186 4251982 997259..998311 1 NC_008321.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 998311 cobT 4251982 cobT Shewanella sp. MR-4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_732979.1 997259 D 60480 CDS YP_732980.1 113969187 4251826 998408..999196 1 NC_008321.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 999196 cobS 4251826 cobS Shewanella sp. MR-4 cobalamin synthase YP_732980.1 998408 D 60480 CDS YP_732981.1 113969188 4251827 999193..999795 1 NC_008321.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: son:SO1037 cobinamide kinase/cobinamide phosphate guanylyltransferase; adenosylcobinamide kinase 999795 4251827 Shewmr4_0844 Shewanella sp. MR-4 adenosylcobinamide kinase YP_732981.1 999193 D 60480 CDS YP_732982.1 113969189 4251828 999883..1001508 1 NC_008321.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1001508 4251828 Shewmr4_0845 Shewanella sp. MR-4 cobyric acid synthase YP_732982.1 999883 D 60480 CDS YP_732983.1 113969190 4251829 1001537..1002172 1 NC_008321.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1002172 4251829 Shewmr4_0846 Shewanella sp. MR-4 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_732983.1 1001537 D 60480 CDS YP_732984.1 113969191 4251830 1002328..1003365 1 NC_008321.1 KEGG: son:SO3711 hypothetical protein; hypothetical protein 1003365 4251830 Shewmr4_0847 Shewanella sp. MR-4 hypothetical protein YP_732984.1 1002328 D 60480 CDS YP_732985.1 113969192 4251831 1003380..1004204 1 NC_008321.1 PFAM: periplasmic binding protein; KEGG: son:SO3709 ABC transporter, periplasmic substrate-binding protein, putative; periplasmic binding protein 1004204 4251831 Shewmr4_0848 Shewanella sp. MR-4 periplasmic binding protein YP_732985.1 1003380 D 60480 CDS YP_732986.1 113969193 4251832 1004283..1004666 1 NC_008321.1 KEGG: son:SO3708 hypothetical protein; hypothetical protein 1004666 4251832 Shewmr4_0849 Shewanella sp. MR-4 hypothetical protein YP_732986.1 1004283 D 60480 CDS YP_732987.1 113969194 4251833 1004720..1005034 1 NC_008321.1 KEGG: vvu:VV12513 hypothetical protein; hypothetical protein 1005034 4251833 Shewmr4_0850 Shewanella sp. MR-4 hypothetical protein YP_732987.1 1004720 D 60480 CDS YP_732988.1 113969195 4251834 1005378..1005602 1 NC_008321.1 KEGG: son:SO3704 hypothetical protein; hypothetical protein 1005602 4251834 Shewmr4_0851 Shewanella sp. MR-4 hypothetical protein YP_732988.1 1005378 D 60480 CDS YP_732989.1 113969196 4251835 1006485..1006880 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: neu:NE1746 fimbrial protein pilin; methylation site containing protein 1006880 4251835 Shewmr4_0852 Shewanella sp. MR-4 methylation site containing protein YP_732989.1 1006485 D 60480 CDS YP_732990.1 113969197 4251836 1006905..1007363 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: psp:PSPPH_0726 type IV pilin, putative; methylation site containing protein 1007363 4251836 Shewmr4_0853 Shewanella sp. MR-4 methylation site containing protein YP_732990.1 1006905 D 60480 CDS YP_732991.1 113969198 4251837 1007393..1007809 1 NC_008321.1 TIGRFAM: type IV pilus modification protein PilV; PFAM: methylation site containing protein; KEGG: csa:Csal_0486 methylation; type IV pilus modification protein PilV 1007809 4251837 Shewmr4_0854 Shewanella sp. MR-4 type IV pilus modification protein PilV YP_732991.1 1007393 D 60480 CDS YP_732992.1 113969199 4251838 1007818..1008354 1 NC_008321.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: xft:PD0021 type IV pilus assembly protein PilW; prepilin-type cleavage/methylation-like protein 1008354 4251838 Shewmr4_0855 Shewanella sp. MR-4 prepilin-type cleavage/methylation-like protein YP_732992.1 1007818 D 60480 CDS YP_732993.1 113969200 4251839 1008421..1009590 1 NC_008321.1 KEGG: sat:SYN_01756 hypothetical membrane protein; hypothetical protein 1009590 4251839 Shewmr4_0856 Shewanella sp. MR-4 hypothetical protein YP_732993.1 1008421 D 60480 CDS YP_732994.1 113969201 4251840 complement(1009677..1009970) 1 NC_008321.1 KEGG: son:SO3699.1 hypothetical protein; hypothetical protein 1009970 4251840 Shewmr4_0857 Shewanella sp. MR-4 hypothetical protein YP_732994.1 1009677 R 60480 CDS YP_732995.1 113969202 4251841 complement(1010217..1010573) 1 NC_008321.1 PFAM: protein of unknown function DUF1486; KEGG: son:SO3697 steroid delta-isomerase domain protein; hypothetical protein 1010573 4251841 Shewmr4_0858 Shewanella sp. MR-4 hypothetical protein YP_732995.1 1010217 R 60480 CDS YP_732996.1 113969203 4251842 complement(1010733..1011779) 1 NC_008321.1 KEGG: son:SO3696 hypothetical protein; hypothetical protein 1011779 4251842 Shewmr4_0859 Shewanella sp. MR-4 hypothetical protein YP_732996.1 1010733 R 60480 CDS YP_732997.1 113969204 4251843 complement(1011915..1012958) 1 NC_008321.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1012958 4251843 Shewmr4_0860 Shewanella sp. MR-4 dihydroorotase YP_732997.1 1011915 R 60480 CDS YP_732998.1 113969205 4250583 1013317..1014579 1 NC_008321.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO3694 HlyD family secretion protein; RND family efflux transporter MFP subunit 1014579 4250583 Shewmr4_0861 Shewanella sp. MR-4 RND family efflux transporter MFP subunit YP_732998.1 1013317 D 60480 CDS YP_732999.1 113969206 4250584 1014579..1014950 1 NC_008321.1 KEGG: son:SO3693 hypothetical protein; hypothetical protein 1014950 4250584 Shewmr4_0862 Shewanella sp. MR-4 hypothetical protein YP_732999.1 1014579 D 60480 CDS YP_733000.1 113969207 4250585 1015051..1015791 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3692 ABC transporter, ATP-binding protein; ABC transporter-like protein 1015791 4250585 Shewmr4_0863 Shewanella sp. MR-4 ABC transporter-like protein YP_733000.1 1015051 D 60480 CDS YP_733001.1 113969208 4250586 1015800..1017104 1 NC_008321.1 PFAM: protein of unknown function DUF214; KEGG: sdn:Sden_2849 protein of unknown function DUF214; hypothetical protein 1017104 4250586 Shewmr4_0864 Shewanella sp. MR-4 hypothetical protein YP_733001.1 1015800 D 60480 CDS YP_733002.1 113969209 4250587 1017116..1018315 1 NC_008321.1 PFAM: protein of unknown function DUF214; KEGG: son:SO3690 ABC transporter, permease protein; hypothetical protein 1018315 4250587 Shewmr4_0865 Shewanella sp. MR-4 hypothetical protein YP_733002.1 1017116 D 60480 CDS YP_733003.1 113969210 4250588 1018412..1019866 1 NC_008321.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: son:SO3689 sigma-54 dependent nitrogen response regulator; two component, sigma54 specific, Fis family transcriptional regulator 1019866 4250588 Shewmr4_0866 Shewanella sp. MR-4 two component, sigma54 specific, Fis family transcriptional regulator YP_733003.1 1018412 D 60480 CDS YP_733004.1 113969211 4250589 1019908..1021575 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3688 nitrogen regulation protein NtrY, putative; periplasmic sensor signal transduction histidine kinase 1021575 4250589 Shewmr4_0867 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_733004.1 1019908 D 60480 CDS YP_733005.1 113969212 4250590 1021808..1022218 1 NC_008321.1 KEGG: son:SO3687 curli production assembly/transport component CsgE, putative; curli production assembly/transport component CsgE 1022218 4250590 Shewmr4_0868 Shewanella sp. MR-4 curli production assembly/transport component CsgE YP_733005.1 1021808 D 60480 CDS YP_733006.1 113969213 4250591 1022229..1022624 1 NC_008321.1 KEGG: son:SO3686 curli production assembly/transport component CsgF, putative; curli production assembly/transport component CsgF 1022624 4250591 Shewmr4_0869 Shewanella sp. MR-4 curli production assembly/transport component CsgF YP_733006.1 1022229 D 60480 CDS YP_733007.1 113969214 4250592 1022624..1023430 1 NC_008321.1 PFAM: Curli production assembly/transport component CsgG; KEGG: son:SO3685 curli production assembly/transport component CsgG, putative; curli production assembly/transport component CsgG 1023430 4250592 Shewmr4_0870 Shewanella sp. MR-4 curli production assembly/transport component CsgG YP_733007.1 1022624 D 60480 CDS YP_733008.1 113969215 4250593 complement(1023489..1024097) 1 NC_008321.1 PFAM: regulatory protein, TetR; KEGG: son:SO3684 transcriptional regulator, TetR family; TetR family transcriptional regulator 1024097 4250593 Shewmr4_0871 Shewanella sp. MR-4 TetR family transcriptional regulator YP_733008.1 1023489 R 60480 CDS YP_733009.1 113969216 4250594 complement(1024119..1025543) 1 NC_008321.1 PFAM: aldehyde dehydrogenase; KEGG: son:SO3683 coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase 1025543 4250594 Shewmr4_0872 Shewanella sp. MR-4 aldehyde dehydrogenase YP_733009.1 1024119 R 60480 CDS YP_733010.1 113969217 4250595 1025741..1026139 1 NC_008321.1 KEGG: son:SO3682 hypothetical protein; hypothetical protein 1026139 4250595 Shewmr4_0873 Shewanella sp. MR-4 hypothetical protein YP_733010.1 1025741 D 60480 CDS YP_733011.1 113969218 4250596 1026159..1026590 1 NC_008321.1 PFAM: UspA domain protein; KEGG: son:SO3681 universal stress protein family; UspA domain-containing protein 1026590 4250596 Shewmr4_0874 Shewanella sp. MR-4 UspA domain-containing protein YP_733011.1 1026159 D 60480 CDS YP_733012.1 113969219 4250597 1026753..1027202 1 NC_008321.1 PFAM: UspA domain protein; KEGG: son:SO3680 universal stress protein family; UspA domain-containing protein 1027202 4250597 Shewmr4_0875 Shewanella sp. MR-4 UspA domain-containing protein YP_733012.1 1026753 D 60480 CDS YP_733013.1 113969220 4250598 complement(1027206..1028063) 1 NC_008321.1 KEGG: sdn:Sden_3307 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1028063 4250598 Shewmr4_0876 Shewanella sp. MR-4 extracellular solute-binding protein YP_733013.1 1027206 R 60480 CDS YP_733014.1 113969221 4250599 complement(1028187..1028738) 1 NC_008321.1 PFAM: protein of unknown function DUF924; KEGG: ilo:IL1577 hypothetical protein; hypothetical protein 1028738 4250599 Shewmr4_0877 Shewanella sp. MR-4 hypothetical protein YP_733014.1 1028187 R 60480 CDS YP_733015.1 113969222 4251669 1028937..1029272 1 NC_008321.1 KEGG: son:SO3679 hypothetical protein; hypothetical protein 1029272 4251669 Shewmr4_0878 Shewanella sp. MR-4 hypothetical protein YP_733015.1 1028937 D 60480 CDS YP_733016.1 113969223 4251670 1029269..1030744 1 NC_008321.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO3678 hypothetical protein; FAD dependent oxidoreductase 1030744 4251670 Shewmr4_0879 Shewanella sp. MR-4 FAD dependent oxidoreductase YP_733016.1 1029269 D 60480 CDS YP_733017.1 113969224 4251671 1030841..1031206 1 NC_008321.1 KEGG: son:SO3677 hypothetical protein; hypothetical protein 1031206 4251671 Shewmr4_0880 Shewanella sp. MR-4 hypothetical protein YP_733017.1 1030841 D 60480 CDS YP_733018.1 113969225 4251672 complement(1031203..1031544) 1 NC_008321.1 KEGG: son:SO3676 hypothetical protein; hypothetical protein 1031544 4251672 Shewmr4_0881 Shewanella sp. MR-4 hypothetical protein YP_733018.1 1031203 R 60480 CDS YP_733019.1 113969226 4251673 1031678..1033519 1 NC_008321.1 KEGG: son:SO3665 ABC transporter, ATP-binding/permease protein, putative; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein 1033519 4251673 Shewmr4_0882 Shewanella sp. MR-4 lipid ABC transporter ATPase/inner membrane protein YP_733019.1 1031678 D 60480 CDS YP_733020.1 113969227 4251674 complement(1033621..1035225) 1 NC_008321.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO3664 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 1035225 4251674 Shewmr4_0883 Shewanella sp. MR-4 AMP-dependent synthetase and ligase YP_733020.1 1033621 R 60480 CDS YP_733021.1 113969228 4251675 complement(1035462..1036244) 1 NC_008321.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dps:DP2240 probable methionine aminopeptidase, MAP; methionine aminopeptidase, type I 1036244 4251675 Shewmr4_0884 Shewanella sp. MR-4 methionine aminopeptidase, type I YP_733021.1 1035462 R 60480 CDS YP_733022.1 113969229 4251676 complement(1036237..1036461) 1 NC_008321.1 KEGG: ilo:IL2066 hypothetical protein; hypothetical protein 1036461 4251676 Shewmr4_0885 Shewanella sp. MR-4 hypothetical protein YP_733022.1 1036237 R 60480 CDS YP_733023.1 113969230 4251677 complement(1036792..1038222) 1 NC_008321.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sdn:Sden_2933 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1038222 4251677 Shewmr4_0886 Shewanella sp. MR-4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_733023.1 1036792 R 60480 CDS YP_733024.1 113969231 4251678 complement(1038382..1039848) 1 NC_008321.1 KEGG: son:SO3660 sigma-54 dependent transcriptional regulator/sensory box protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AAA ATPase; Fis family transcriptional regulator 1039848 4251678 Shewmr4_0887 Shewanella sp. MR-4 Fis family transcriptional regulator YP_733024.1 1038382 R 60480 CDS YP_733025.1 113969232 4251679 complement(1040359..1040904) 1 NC_008321.1 KEGG: son:SO3659 thiol:disulfide interchange protein, putative; thiol:disulfide interchange protein 1040904 4251679 Shewmr4_0888 Shewanella sp. MR-4 thiol:disulfide interchange protein YP_733025.1 1040359 R 60480 CDS YP_733026.1 113969233 4251680 1041107..1042657 1 NC_008321.1 PFAM: peptidase S10, serine carboxypeptidase; KEGG: pcu:pc0501 hypothetical protein; peptidase S10, serine carboxypeptidase 1042657 4251680 Shewmr4_0889 Shewanella sp. MR-4 peptidase S10, serine carboxypeptidase YP_733026.1 1041107 D 60480 CDS YP_733027.1 113969234 4251681 1042744..1043358 1 NC_008321.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO3657 transporter, LysE family; lysine exporter protein LysE/YggA 1043358 4251681 Shewmr4_0890 Shewanella sp. MR-4 lysine exporter protein LysE/YggA YP_733027.1 1042744 D 60480 CDS YP_733028.1 113969235 4251682 complement(1043479..1043796) 1 NC_008321.1 KEGG: son:SO3656 hypothetical protein; hypothetical protein 1043796 4251682 Shewmr4_0891 Shewanella sp. MR-4 hypothetical protein YP_733028.1 1043479 R 60480 CDS YP_733029.1 113969236 4251683 1044192..1044626 1 NC_008321.1 KEGG: cvi:CV1035 hypothetical protein; hypothetical protein 1044626 4251683 Shewmr4_0892 Shewanella sp. MR-4 hypothetical protein YP_733029.1 1044192 D 60480 CDS YP_733030.1 113969237 4251684 1044926..1045585 1 NC_008321.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1045585 4251684 Shewmr4_0893 Shewanella sp. MR-4 uracil-DNA glycosylase YP_733030.1 1044926 D 60480 CDS YP_733031.1 113969238 4251685 complement(1045662..1046657) 1 NC_008321.1 PFAM: Polyprenyl synthetase; KEGG: son:SO3653 octaprenyl-diphosphate synthase; trans-hexaprenyltranstransferase 1046657 4251685 Shewmr4_0894 Shewanella sp. MR-4 trans-hexaprenyltranstransferase YP_733031.1 1045662 R 60480 CDS YP_733032.1 113969239 4251686 1046907..1047218 1 NC_008321.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: son:SO3652 ribosomal protein L21; 50S ribosomal protein L21 1047218 rplU 4251686 rplU Shewanella sp. MR-4 50S ribosomal protein L21 YP_733032.1 1046907 D 60480 CDS YP_733033.1 113969240 4251687 1047233..1047487 1 NC_008321.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1047487 rpmA 4251687 rpmA Shewanella sp. MR-4 50S ribosomal protein L27 YP_733033.1 1047233 D 60480 CDS YP_733034.1 113969241 4251688 1047700..1048866 1 NC_008321.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1048866 obgE 4251688 obgE Shewanella sp. MR-4 GTPase ObgE YP_733034.1 1047700 D 60480 CDS YP_733035.1 113969242 4251689 1048894..1049655 1 NC_008321.1 PFAM: protein of unknown function DUF1212; KEGG: son:SO3648 hypothetical protein; hypothetical protein 1049655 4251689 Shewmr4_0898 Shewanella sp. MR-4 hypothetical protein YP_733035.1 1048894 D 60480 CDS YP_733036.1 113969243 4251690 1049652..1050125 1 NC_008321.1 KEGG: son:SO3647 hypothetical protein; hypothetical protein 1050125 4251690 Shewmr4_0899 Shewanella sp. MR-4 hypothetical protein YP_733036.1 1049652 D 60480 CDS YP_733037.1 113969244 4251691 1050148..1050630 1 NC_008321.1 PFAM: dihydrofolate reductase region; KEGG: son:SO3646 dihydrofolate reductase; dihydrofolate reductase 1050630 4251691 Shewmr4_0900 Shewanella sp. MR-4 dihydrofolate reductase YP_733037.1 1050148 D 60480 CDS YP_733038.1 113969245 4251692 1050833..1051246 1 NC_008321.1 KEGG: son:SO3645 hypothetical protein; hypothetical protein 1051246 4251692 Shewmr4_0901 Shewanella sp. MR-4 hypothetical protein YP_733038.1 1050833 D 60480 CDS YP_733039.1 113969246 4251693 complement(1051497..1053518) 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3642 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1053518 4251693 Shewmr4_0902 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_733039.1 1051497 R 60480 CDS YP_733040.1 113969247 4251694 complement(1053615..1054439) 1 NC_008321.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 1054439 apaH 4251694 apaH Shewanella sp. MR-4 diadenosine tetraphosphatase YP_733040.1 1053615 R 60480 CDS YP_733041.1 113969248 4251695 complement(1054461..1054841) 1 NC_008321.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 1054841 apaG 4251695 apaG Shewanella sp. MR-4 ApaG protein YP_733041.1 1054461 R 60480 CDS YP_733042.1 113969249 4251696 complement(1054897..1055703) 1 NC_008321.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1055703 ksgA 4251696 ksgA Shewanella sp. MR-4 dimethyladenosine transferase YP_733042.1 1054897 R 60480 CDS YP_733043.1 113969250 4251697 complement(1055718..1056704) 1 NC_008321.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 1056704 pdxA 4251697 pdxA Shewanella sp. MR-4 4-hydroxythreonine-4-phosphate dehydrogenase YP_733043.1 1055718 R 60480 CDS YP_733044.1 113969251 4251698 complement(1056711..1058015) 1 NC_008321.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO3637 survival protein surA; PpiC-type peptidyl-prolyl cis-trans isomerase 1058015 4251698 Shewmr4_0907 Shewanella sp. MR-4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_733044.1 1056711 R 60480 CDS YP_733045.1 113969252 4251699 complement(1058236..1060533) 1 NC_008321.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: son:SO3636 organic solvent tolerance protein; organic solvent tolerance protein 1060533 4251699 Shewmr4_0908 Shewanella sp. MR-4 organic solvent tolerance protein YP_733045.1 1058236 R 60480 CDS YP_733046.1 113969253 4251700 1060649..1061740 1 NC_008321.1 PFAM: aminoglycoside phosphotransferase; KEGG: son:SO3635 hypothetical phosphotransferase; aminoglycoside phosphotransferase 1061740 4251700 Shewmr4_0909 Shewanella sp. MR-4 aminoglycoside phosphotransferase YP_733046.1 1060649 D 60480 CDS YP_733047.1 113969254 4251701 1061737..1062405 1 NC_008321.1 PFAM: Nucleotidyl transferase; KEGG: son:SO3634 nucleotidyltransferase family protein; nucleotidyl transferase 1062405 4251701 Shewmr4_0910 Shewanella sp. MR-4 nucleotidyl transferase YP_733047.1 1061737 D 60480 CDS YP_733048.1 113969255 4251702 1062515..1063303 1 NC_008321.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 1063303 djlA 4251702 djlA Shewanella sp. MR-4 Dna-J like membrane chaperone protein YP_733048.1 1062515 D 60480 CDS YP_733049.1 113969256 4251703 1063359..1064003 1 NC_008321.1 KEGG: son:SO3632 hypothetical protein; hypothetical protein 1064003 4251703 Shewmr4_0912 Shewanella sp. MR-4 hypothetical protein YP_733049.1 1063359 D 60480 CDS YP_733050.1 113969257 4251844 1064049..1065002 1 NC_008321.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO3631 glycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 1065002 4251844 Shewmr4_0913 Shewanella sp. MR-4 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_733050.1 1064049 D 60480 CDS YP_733051.1 113969258 4251845 complement(1065396..1066409) 1 NC_008321.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3360 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1066409 4251845 Shewmr4_0914 Shewanella sp. MR-4 transposase IS116/IS110/IS902 family protein YP_733051.1 1065396 R 60480 CDS YP_733052.1 113969259 4251846 complement(1066826..1067251) 1 NC_008321.1 KEGG: bcz:BCZK4404 hypothetical protein; hypothetical protein 1067251 4251846 Shewmr4_0915 Shewanella sp. MR-4 hypothetical protein YP_733052.1 1066826 R 60480 CDS YP_733053.1 113969260 4251847 1068976..1070433 1 NC_008321.1 PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_04311 outer membrane protein and related peptidoglycan-associated (LipO)protein; OmpA/MotB domain-containing protein 1070433 4251847 Shewmr4_0916 Shewanella sp. MR-4 OmpA/MotB domain-containing protein YP_733053.1 1068976 D 60480 CDS YP_733054.1 113969261 4251848 complement(1070596..1071321) 1 NC_008321.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sdn:Sden_0685 pseudouridine synthase, Rsu; pseudouridine synthase, Rsu 1071321 4251848 Shewmr4_0917 Shewanella sp. MR-4 pseudouridine synthase, Rsu YP_733054.1 1070596 R 60480 CDS YP_733055.1 113969262 4251849 complement(1071333..1072025) 1 NC_008321.1 KEGG: son:SO1086 hypothetical protein; hypothetical protein 1072025 4251849 Shewmr4_0918 Shewanella sp. MR-4 hypothetical protein YP_733055.1 1071333 R 60480 CDS YP_733056.1 113969263 4251850 complement(1072212..1073549) 1 NC_008321.1 PFAM: Na+/H+ antiporter NhaC; KEGG: son:SO1087 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC 1073549 4251850 Shewmr4_0919 Shewanella sp. MR-4 Na+/H+ antiporter NhaC YP_733056.1 1072212 R 60480 CDS YP_733057.1 113969264 4251851 1074098..1075006 1 NC_008321.1 KEGG: tbd:Tbd_0710 hypothetical protein; hypothetical protein 1075006 4251851 Shewmr4_0920 Shewanella sp. MR-4 hypothetical protein YP_733057.1 1074098 D 60480 CDS YP_733058.1 113969265 4251852 1075086..1075637 1 NC_008321.1 PFAM: FMN-binding domain protein; KEGG: tbd:Tbd_0709 putative signal peptide protein; FMN-binding domain-containing protein 1075637 4251852 Shewmr4_0921 Shewanella sp. MR-4 FMN-binding domain-containing protein YP_733058.1 1075086 D 60480 CDS YP_733059.1 113969266 4251853 1075637..1076485 1 NC_008321.1 KEGG: son:SO1090 ApbE family protein, putative; ApbE family protein 1076485 4251853 Shewmr4_0922 Shewanella sp. MR-4 ApbE family protein YP_733059.1 1075637 D 60480 CDS YP_733060.1 113969267 4251854 1076541..1077008 1 NC_008321.1 KEGG: tcx:Tcr_0415 hypothetical protein; hypothetical protein 1077008 4251854 Shewmr4_0923 Shewanella sp. MR-4 hypothetical protein YP_733060.1 1076541 D 60480 CDS YP_733061.1 113969268 4251855 complement(1077082..1078713) 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ilo:IL2343 methyl-accepting chemotaxis protein (contains HAMP domain); methyl-accepting chemotaxis sensory transducer 1078713 4251855 Shewmr4_0924 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_733061.1 1077082 R 60480 CDS YP_733062.1 113969269 4251856 complement(1078856..1079746) 1 NC_008321.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1091 hypothetical protein; hypothetical protein 1079746 4251856 Shewmr4_0925 Shewanella sp. MR-4 hypothetical protein YP_733062.1 1078856 R 60480 CDS YP_733063.1 113969270 4251857 1079954..1080733 1 NC_008321.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: son:SO1092 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 1080733 4251857 Shewmr4_0926 Shewanella sp. MR-4 AraC family transcriptional regulator YP_733063.1 1079954 D 60480 CDS YP_733064.1 113969271 4251858 complement(1081301..1081687) 1 NC_008321.1 KEGG: son:SO1094 hypothetical transcription elongation factor; GreA/GreB family elongation factor 1081687 4251858 Shewmr4_0927 Shewanella sp. MR-4 GreA/GreB family elongation factor YP_733064.1 1081301 R 60480 CDS YP_733065.1 113969272 4251859 1082285..1083577 1 NC_008321.1 KEGG: son:SO1095 O-acetylhomoserine (thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 1083577 4251859 Shewmr4_0928 Shewanella sp. MR-4 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_733065.1 1082285 D 60480 CDS YP_733066.1 113969273 4251860 complement(1083641..1086787) 1 NC_008321.1 KEGG: son:SO1096 hypothetical protein; hypothetical protein 1086787 4251860 Shewmr4_0929 Shewanella sp. MR-4 hypothetical protein YP_733066.1 1083641 R 60480 CDS YP_733067.1 113969274 4251861 complement(1086993..1088126) 1 NC_008321.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO1097 putative ribosomal RNA small subunit methyltransferase D; rRNA (guanine-N(2)-)-methyltransferase 1088126 4251861 Shewmr4_0930 Shewanella sp. MR-4 rRNA (guanine-N(2)-)-methyltransferase YP_733067.1 1086993 R 60480 CDS YP_733068.1 113969275 4251862 1088304..1088963 1 NC_008321.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: son:SO1098 hypothetical alkylated DNA repair protein; DNA-N1-methyladenine dioxygenase 1088963 4251862 Shewmr4_0931 Shewanella sp. MR-4 DNA-N1-methyladenine dioxygenase YP_733068.1 1088304 D 60480 CDS YP_733069.1 113969276 4251863 1089098..1089418 1 NC_008321.1 PFAM: BolA family protein; KEGG: son:SO1099 bolA protein; transcriptional regulator BolA 1089418 4251863 Shewmr4_0932 Shewanella sp. MR-4 transcriptional regulator BolA YP_733069.1 1089098 D 60480 CDS YP_733070.1 113969277 4251864 1089622..1090737 1 NC_008321.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: son:SO1100 extracellular solute-binding protein, family 7; TRAP dicarboxylate transporter- DctP subunit 1090737 4251864 Shewmr4_0933 Shewanella sp. MR-4 TRAP dicarboxylate transporter- DctP subunit YP_733070.1 1089622 D 60480 CDS YP_733071.1 113969278 4251865 1090893..1091402 1 NC_008321.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1091402 4251865 Shewmr4_0934 Shewanella sp. MR-4 S-ribosylhomocysteinase YP_733071.1 1090893 D 60480 CDS YP_733072.1 113969279 4251866 1091557..1093608 1 NC_008321.1 PFAM: TonB-dependent receptor; KEGG: son:SO1102 TonB-dependent receptor C-terminal region domain lipoprotein; TonB-dependent receptor 1093608 4251866 Shewmr4_0935 Shewanella sp. MR-4 TonB-dependent receptor YP_733072.1 1091557 D 60480 CDS YP_733073.1 113969280 4251867 1094012..1095346 1 NC_008321.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1095346 4251867 Shewmr4_0936 Shewanella sp. MR-4 Na(+)-translocating NADH-quinone reductase subunit A YP_733073.1 1094012 D 60480 CDS YP_733074.1 113969281 4251868 1095346..1096545 1 NC_008321.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1096545 4251868 Shewmr4_0937 Shewanella sp. MR-4 Na(+)-translocating NADH-quinone reductase subunit B YP_733074.1 1095346 D 60480 CDS YP_733075.1 113969282 4251869 1096538..1097326 1 NC_008321.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1097326 4251869 Shewmr4_0938 Shewanella sp. MR-4 Na(+)-translocating NADH-quinone reductase subunit C YP_733075.1 1096538 D 60480 CDS YP_733076.1 113969283 4251870 1097326..1097958 1 NC_008321.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1097958 4251870 Shewmr4_0939 Shewanella sp. MR-4 Na(+)-translocating NADH-quinone reductase subunit D YP_733076.1 1097326 D 60480 CDS YP_733077.1 113969284 4251871 1097965..1098573 1 NC_008321.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1098573 4251871 Shewmr4_0940 Shewanella sp. MR-4 Na(+)-translocating NADH-quinone reductase subunit E YP_733077.1 1097965 D 60480 CDS YP_733078.1 113969285 4251872 1098620..1099876 1 NC_008321.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1099876 4251872 Shewmr4_0941 Shewanella sp. MR-4 Na(+)-translocating NADH-quinone reductase subunit F YP_733078.1 1098620 D 60480 CDS YP_733079.1 113969286 4251873 1099909..1101033 1 NC_008321.1 PFAM: ApbE family lipoprotein; KEGG: son:SO1109 thiamin biosynthesis lipoprotein ApbE; ApbE family lipoprotein 1101033 4251873 Shewmr4_0942 Shewanella sp. MR-4 ApbE family lipoprotein YP_733079.1 1099909 D 60480 CDS YP_733080.1 113969287 4251874 1101045..1101269 1 NC_008321.1 PFAM: protein of unknown function DUF539; KEGG: son:SO1110 hypothetical protein; hypothetical protein 1101269 4251874 Shewmr4_0943 Shewanella sp. MR-4 hypothetical protein YP_733080.1 1101045 D 60480 CDS YP_733081.1 113969288 4251875 1101644..1102117 1 NC_008321.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: son:SO1111 bacterioferritin subunit 2; bacterioferritin 1102117 4251875 Shewmr4_0944 Shewanella sp. MR-4 bacterioferritin YP_733081.1 1101644 D 60480 CDS YP_733082.1 113969289 4251876 1102127..1102594 1 NC_008321.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: son:SO1112 bacterioferritin subunit 1; bacterioferritin 1102594 4251876 Shewmr4_0945 Shewanella sp. MR-4 bacterioferritin YP_733082.1 1102127 D 60480 CDS YP_733083.1 113969290 4251877 1102894..1104897 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO1112.1 hypothetical chemotactic transducer; methyl-accepting chemotaxis sensory transducer 1104897 4251877 Shewmr4_0946 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_733083.1 1102894 D 60480 CDS YP_733084.1 113969291 4251878 1105048..1106127 1 NC_008321.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1106127 4251878 Shewmr4_0947 Shewanella sp. MR-4 DNA polymerase IV YP_733084.1 1105048 D 60480 CDS YP_733085.1 113969292 4251599 complement(1106307..1107770) 1 NC_008321.1 KEGG: son:SO1115 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; M20C family Xaa-His dipeptidase 1107770 4251599 Shewmr4_0948 Shewanella sp. MR-4 M20C family Xaa-His dipeptidase YP_733085.1 1106307 R 60480 CDS YP_733086.1 113969293 4251600 1107989..1109527 1 NC_008321.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: son:SO1117 cytosol aminopeptidase, putative; peptidase M17, leucyl aminopeptidase domain-containing protein 1109527 4251600 Shewmr4_0949 Shewanella sp. MR-4 peptidase M17, leucyl aminopeptidase domain-containing protein YP_733086.1 1107989 D 60480 CDS YP_733087.1 113969294 4251601 1110440..1112611 1 NC_008321.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ilo:IL1581 outer membrane receptor for ferric siderophore; TonB-dependent siderophore receptor 1112611 4251601 Shewmr4_0950 Shewanella sp. MR-4 TonB-dependent siderophore receptor YP_733087.1 1110440 D 60480 CDS YP_733088.1 113969295 4251602 1113020..1114309 1 NC_008321.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO1120 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 1114309 4251602 Shewmr4_0951 Shewanella sp. MR-4 xanthine/uracil/vitamin C permease YP_733088.1 1113020 D 60480 CDS YP_733089.1 113969296 4251603 1114486..1115604 1 NC_008321.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1115604 4251603 Shewmr4_0952 Shewanella sp. MR-4 gamma-glutamyl kinase YP_733089.1 1114486 D 60480 CDS YP_733090.1 113969297 4251604 1115617..1116894 1 NC_008321.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1116894 proA 4251604 proA Shewanella sp. MR-4 gamma-glutamyl phosphate reductase YP_733090.1 1115617 D 60480 CDS YP_733091.1 113969298 4251605 complement(1116968..1117270) 1 NC_008321.1 KEGG: son:SO1123 hypothetical protein; hypothetical protein 1117270 4251605 Shewmr4_0954 Shewanella sp. MR-4 hypothetical protein YP_733091.1 1116968 R 60480 CDS YP_733092.1 113969299 4251606 complement(1117395..1117871) 1 NC_008321.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: son:SO1124 conserved hypothetical protein TIGR00011; ybaK/ebsC protein 1117871 4251606 Shewmr4_0955 Shewanella sp. MR-4 ybaK/ebsC protein YP_733092.1 1117395 R 60480 CDS YP_733093.1 113969300 4251607 complement(1118005..1118925) 1 NC_008321.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1125 integral membrane domain protein; hypothetical protein 1118925 4251607 Shewmr4_0956 Shewanella sp. MR-4 hypothetical protein YP_733093.1 1118005 R 60480 CDS YP_733094.1 113969301 4251608 1119212..1121131 1 NC_008321.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1121131 dnaK 4251608 dnaK Shewanella sp. MR-4 molecular chaperone DnaK YP_733094.1 1119212 D 60480 CDS YP_733095.1 113969302 4251609 1121242..1122375 1 NC_008321.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1122375 4251609 Shewmr4_0958 Shewanella sp. MR-4 chaperone protein DnaJ YP_733095.1 1121242 D 60480 CDS YP_733096.1 113969303 4251610 1122477..1123364 1 NC_008321.1 hypothetical protein 1123364 4251610 Shewmr4_0959 Shewanella sp. MR-4 hypothetical protein YP_733096.1 1122477 D 60480 CDS YP_733097.1 113969304 4251611 1123923..1125278 1 NC_008321.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1136 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase domain-containing protein 1125278 4251611 Shewmr4_0960 Shewanella sp. MR-4 DEAD/DEAH box helicase domain-containing protein YP_733097.1 1123923 D 60480 CDS YP_733098.1 113969305 4251612 1125402..1125995 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bpm:BURPS1710b_2160 ribosomal-protein-serine acetyltransferase; GCN5-related N-acetyltransferase 1125995 4251612 Shewmr4_0961 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_733098.1 1125402 D 60480 CDS YP_733099.1 113969306 4251613 1126136..1126945 1 NC_008321.1 PFAM: peptidase M48, Ste24p; KEGG: son:SO1137 hypothetical protein; peptidase M48, Ste24p 1126945 4251613 Shewmr4_0962 Shewanella sp. MR-4 peptidase M48, Ste24p YP_733099.1 1126136 D 60480 CDS YP_733100.1 113969307 4251614 1127138..1127755 1 NC_008321.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1139 peptidyl-prolyl cis-trans isomerase FklB; peptidylprolyl isomerase, FKBP-type 1127755 4251614 Shewmr4_0963 Shewanella sp. MR-4 peptidylprolyl isomerase, FKBP-type YP_733100.1 1127138 D 60480 CDS YP_733101.1 113969308 4251615 1127828..1128640 1 NC_008321.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1128640 4251615 Shewmr4_0964 Shewanella sp. MR-4 dihydrodipicolinate reductase YP_733101.1 1127828 D 60480 CDS YP_733102.1 113969309 4251616 1128808..1129968 1 NC_008321.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1129968 4251616 Shewmr4_0965 Shewanella sp. MR-4 carbamoyl phosphate synthase small subunit YP_733102.1 1128808 D 60480 CDS YP_733103.1 113969310 4251617 1129996..1133220 1 NC_008321.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1133220 carB 4251617 carB Shewanella sp. MR-4 carbamoyl phosphate synthase large subunit YP_733103.1 1129996 D 60480 CDS YP_733104.1 113969311 4251618 complement(1133302..1134069) 1 NC_008321.1 SMART: extracellular solute-binding protein, family 3; KEGG: son:SO1143 hypothetical protein; extracellular solute-binding protein 1134069 4251618 Shewmr4_0967 Shewanella sp. MR-4 extracellular solute-binding protein YP_733104.1 1133302 R 60480 CDS YP_733105.1 113969312 4251619 complement(1134320..1135408) 1 NC_008321.1 PFAM: chemotaxis sensory transducer; KEGG: son:SO1144 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1135408 4251619 Shewmr4_0968 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_733105.1 1134320 R 60480 CDS YP_733106.1 113969313 4251620 1135997..1137130 1 NC_008321.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: son:SO1148 hypothetical protein; endonuclease/exonuclease/phosphatase 1137130 4251620 Shewmr4_0969 Shewanella sp. MR-4 endonuclease/exonuclease/phosphatase YP_733106.1 1135997 D 60480 CDS YP_733107.1 113969314 4251621 complement(1137171..1137986) 1 NC_008321.1 KEGG: sdn:Sden_0966 hypothetical protein; hypothetical protein 1137986 4251621 Shewmr4_0970 Shewanella sp. MR-4 hypothetical protein YP_733107.1 1137171 R 60480 CDS YP_733108.1 113969315 4251622 complement(1137983..1138864) 1 NC_008321.1 PFAM: protein of unknown function DUF692; KEGG: sdn:Sden_0967 protein of unknown function DUF692; hypothetical protein 1138864 4251622 Shewmr4_0971 Shewanella sp. MR-4 hypothetical protein YP_733108.1 1137983 R 60480 CDS YP_733109.1 113969316 4251623 complement(1138948..1139400) 1 NC_008321.1 KEGG: sdn:Sden_0968 putative lipoprotein; putative lipoprotein 1139400 4251623 Shewmr4_0972 Shewanella sp. MR-4 putative lipoprotein YP_733109.1 1138948 R 60480 CDS YP_733110.1 113969317 4251624 1139869..1141059 1 NC_008321.1 SMART: PUA domain containing protein; KEGG: son:SO1149 hypothetical SAM-dependent methyltransferase; SAM-dependent methyltransferase 1141059 4251624 Shewmr4_0973 Shewanella sp. MR-4 SAM-dependent methyltransferase YP_733110.1 1139869 D 60480 CDS YP_733111.1 113969318 4251625 complement(1141167..1141826) 1 NC_008321.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1141826 4251625 Shewmr4_0974 Shewanella sp. MR-4 ribose-5-phosphate isomerase A YP_733111.1 1141167 R 60480 CDS YP_733112.1 113969319 4251626 1142122..1143048 1 NC_008321.1 PFAM: protein of unknown function DUF808; KEGG: son:SO1151 hypothetical protein; hypothetical protein 1143048 4251626 Shewmr4_0975 Shewanella sp. MR-4 hypothetical protein YP_733112.1 1142122 D 60480 CDS YP_733113.1 113969320 4251627 1143142..1144041 1 NC_008321.1 PFAM: 3'-5' exonuclease; KEGG: son:SO1153 exonuclease, putative; 3'-5' exonuclease 1144041 4251627 Shewmr4_0976 Shewanella sp. MR-4 3'-5' exonuclease YP_733113.1 1143142 D 60480 CDS YP_733114.1 113969321 4251628 1144085..1145053 1 NC_008321.1 KEGG: son:SO1154 hypothetical protein; hypothetical protein 1145053 4251628 Shewmr4_0977 Shewanella sp. MR-4 hypothetical protein YP_733114.1 1144085 D 60480 CDS YP_733115.1 113969322 4251629 1145578..1145883 1 NC_008321.1 KEGG: son:SO1155 hypothetical protein; hypothetical protein 1145883 4251629 Shewmr4_0978 Shewanella sp. MR-4 hypothetical protein YP_733115.1 1145578 D 60480 CDS YP_733116.1 113969323 4251630 1145944..1148118 1 NC_008321.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1156 TonB-dependent receptor; TonB-dependent siderophore receptor 1148118 4251630 Shewmr4_0979 Shewanella sp. MR-4 TonB-dependent siderophore receptor YP_733116.1 1145944 D 60480 CDS YP_733117.1 113969324 4251631 1148108..1149313 1 NC_008321.1 KEGG: son:SO1157 hypothetical protein; hypothetical protein 1149313 4251631 Shewmr4_0980 Shewanella sp. MR-4 hypothetical protein YP_733117.1 1148108 D 60480 CDS YP_733118.1 113969325 4251632 complement(1149663..1150130) 1 NC_008321.1 PFAM: Ferritin, Dps family protein; KEGG: son:SO1158 Dps family protein; Ferritin, Dps family protein 1150130 4251632 Shewmr4_0981 Shewanella sp. MR-4 Ferritin, Dps family protein YP_733118.1 1149663 R 60480 CDS YP_733119.1 113969326 4251633 1150359..1150709 1 NC_008321.1 KEGG: son:SO1159 hypothetical protein; hypothetical protein 1150709 4251633 Shewmr4_0982 Shewanella sp. MR-4 hypothetical protein YP_733119.1 1150359 D 60480 CDS YP_733120.1 113969327 4251021 1150807..1151259 1 NC_008321.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1160 ribosomal-protein-alanine acetyltransferase; SSU ribosomal protein S18P alanine acetyltransferase 1151259 4251021 Shewmr4_0983 Shewanella sp. MR-4 SSU ribosomal protein S18P alanine acetyltransferase YP_733120.1 1150807 D 60480 CDS YP_733121.1 113969328 4251022 complement(1151328..1152293) 1 NC_008321.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1152293 4251022 Shewmr4_0984 Shewanella sp. MR-4 lipoyl synthase YP_733121.1 1151328 R 60480 CDS YP_733122.1 113969329 4251023 complement(1152290..1152943) 1 NC_008321.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 1152943 lipB 4251023 lipB Shewanella sp. MR-4 lipoate-protein ligase B YP_733122.1 1152290 R 60480 CDS YP_733123.1 113969330 4251024 complement(1153036..1153302) 1 NC_008321.1 PFAM: protein of unknown function DUF493; KEGG: son:SO1163 hypothetical protein; hypothetical protein 1153302 4251024 Shewmr4_0986 Shewanella sp. MR-4 hypothetical protein YP_733123.1 1153036 R 60480 CDS YP_733124.1 113969331 4251025 complement(1153424..1154599) 1 NC_008321.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: son:SO1164 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 1154599 4251025 Shewmr4_0987 Shewanella sp. MR-4 penicillin-binding protein 6 YP_733124.1 1153424 R 60480 CDS YP_733125.1 113969332 4251026 complement(1154744..1155586) 1 NC_008321.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: son:SO1165 rare lipoprotein A; rare lipoprotein A 1155586 4251026 Shewmr4_0988 Shewanella sp. MR-4 rare lipoprotein A YP_733125.1 1154744 R 60480 CDS YP_733126.1 113969333 4251027 complement(1155570..1156634) 1 NC_008321.1 TIGRFAM: lytic murein transglycosylase B; KEGG: son:SO1166 membrane-bound lytic transglycosylase, putative; lytic murein transglycosylase B 1156634 4251027 Shewmr4_0989 Shewanella sp. MR-4 lytic murein transglycosylase B YP_733126.1 1155570 R 60480 CDS YP_733127.1 113969334 4251028 complement(1156652..1157755) 1 NC_008321.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: son:SO1167 rod shape-determining protein RodA; rod shape-determining protein RodA 1157755 4251028 Shewmr4_0990 Shewanella sp. MR-4 rod shape-determining protein RodA YP_733127.1 1156652 R 60480 CDS YP_733128.1 113969335 4251029 complement(1157752..1159608) 1 NC_008321.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: son:SO1168 penicillin-binding protein 2; peptidoglycan glycosyltransferase 1159608 4251029 Shewmr4_0991 Shewanella sp. MR-4 peptidoglycan glycosyltransferase YP_733128.1 1157752 R 60480 CDS YP_733129.1 113969336 4251030 complement(1159669..1160139) 1 NC_008321.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 1160139 4251030 Shewmr4_0992 Shewanella sp. MR-4 rRNA large subunit methyltransferase YP_733129.1 1159669 R 60480 CDS YP_733130.1 113969337 4251031 complement(1160139..1160483) 1 NC_008321.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: son:SO1170 iojap domain protein; iojap-like protein 1160483 4251031 Shewmr4_0993 Shewanella sp. MR-4 iojap-like protein YP_733130.1 1160139 R 60480 CDS YP_733131.1 113969338 4251032 complement(1160586..1161224) 1 NC_008321.1 KEGG: son:SO1171 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate-nucleotide adenylyltransferase 1161224 4251032 Shewmr4_0994 Shewanella sp. MR-4 nicotinate-nucleotide adenylyltransferase YP_733131.1 1160586 R 60480 CDS YP_733132.1 113969339 4251033 complement(1161237..1162268) 1 NC_008321.1 KEGG: son:SO1172 DNA polymerase III delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta 1162268 4251033 Shewmr4_0995 Shewanella sp. MR-4 DNA polymerase III subunit delta YP_733132.1 1161237 R 60480 CDS YP_733133.1 113969340 4251034 complement(1162321..1162815) 1 NC_008321.1 PFAM: Rare lipoprotein B; KEGG: son:SO1173 rare lipoprotein B; rare lipoprotein B 1162815 4251034 Shewmr4_0996 Shewanella sp. MR-4 rare lipoprotein B YP_733133.1 1162321 R 60480 CDS YP_733134.1 113969341 4251035 complement(1162875..1165454) 1 NC_008321.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1165454 leuS 4251035 leuS Shewanella sp. MR-4 leucyl-tRNA synthetase YP_733134.1 1162875 R 60480 CDS YP_733135.1 113969342 4251036 1165576..1166076 1 NC_008321.1 PFAM: protein of unknown function DUF1451; KEGG: son:SO1175 hypothetical protein; hypothetical protein 1166076 4251036 Shewmr4_0998 Shewanella sp. MR-4 hypothetical protein YP_733135.1 1165576 D 60480 CDS YP_733136.1 113969343 4251037 complement(1166138..1166632) 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: son:SO1176 hypothetical protein; methylation site containing protein 1166632 4251037 Shewmr4_0999 Shewanella sp. MR-4 methylation site containing protein YP_733136.1 1166138 R 60480 CDS YP_733137.1 113969344 4251038 complement(1166648..1168198) 1 NC_008321.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 1168198 lnt 4251038 lnt Shewanella sp. MR-4 apolipoprotein N-acyltransferase YP_733137.1 1166648 R 60480 CDS YP_733138.1 113969345 4251039 complement(1168241..1169116) 1 NC_008321.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: son:SO1178 magnesium and cobalt efflux protein CorC; CBS domain-containing protein 1169116 4251039 Shewmr4_1001 Shewanella sp. MR-4 CBS domain-containing protein YP_733138.1 1168241 R 60480 CDS YP_733139.1 113969346 4251040 complement(1169156..1169617) 1 NC_008321.1 PFAM: protein of unknown function UPF0054; KEGG: son:SO1179 conserved hypothetical protein TIGR00043; putative metalloprotease 1169617 4251040 Shewmr4_1002 Shewanella sp. MR-4 putative metalloprotease YP_733139.1 1169156 R 60480 CDS YP_733140.1 113969347 4251041 complement(1169607..1170671) 1 NC_008321.1 PFAM: PhoH family protein; KEGG: son:SO1180 PhoH family protein; PhoH family protein 1170671 4251041 Shewmr4_1003 Shewanella sp. MR-4 PhoH family protein YP_733140.1 1169607 R 60480 CDS YP_733141.1 113969348 4251042 complement(1170935..1172359) 1 NC_008321.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1172359 4251042 Shewmr4_1004 Shewanella sp. MR-4 (dimethylallyl)adenosine tRNA methylthiotransferase YP_733141.1 1170935 R 60480 CDS YP_733142.1 113969349 4251043 complement(1172499..1172831) 1 NC_008321.1 KEGG: son:SO1182 hypothetical protein; hypothetical protein 1172831 4251043 Shewmr4_1005 Shewanella sp. MR-4 hypothetical protein YP_733142.1 1172499 R 60480 CDS YP_733143.1 113969350 4251044 1173177..1174403 1 NC_008321.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO1183 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 1174403 4251044 Shewmr4_1006 Shewanella sp. MR-4 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_733143.1 1173177 D 60480 CDS YP_733144.1 113969351 4251045 1174571..1175158 1 NC_008321.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1175158 4251045 Shewmr4_1007 Shewanella sp. MR-4 peptidyl-tRNA hydrolase YP_733144.1 1174571 D 60480 CDS YP_733145.1 113969352 4251046 1175299..1176390 1 NC_008321.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1176390 4251046 Shewmr4_1008 Shewanella sp. MR-4 GTP-dependent nucleic acid-binding protein EngD YP_733145.1 1175299 D 60480 CDS YP_733146.1 113969353 4251047 complement(1177671..1178306) 1 NC_008321.1 KEGG: son:SO1187 hypothetical protein; hypothetical protein 1178306 4251047 Shewmr4_1009 Shewanella sp. MR-4 hypothetical protein YP_733146.1 1177671 R 60480 CDS YP_733147.1 113969354 4251048 1178775..1179308 1 NC_008321.1 KEGG: son:SO1188 hypothetical protein; hypothetical protein 1179308 4251048 Shewmr4_1010 Shewanella sp. MR-4 hypothetical protein YP_733147.1 1178775 D 60480 CDS YP_733148.1 113969355 4251049 1179322..1179837 1 NC_008321.1 KEGG: son:SO1189 lysozyme; hypothetical protein 1179837 4251049 Shewmr4_1011 Shewanella sp. MR-4 hypothetical protein YP_733148.1 1179322 D 60480 CDS YP_733149.1 113969356 4251050 1179867..1180685 1 NC_008321.1 KEGG: son:SO1190 hypothetical protein; hypothetical protein 1180685 4251050 Shewmr4_1012 Shewanella sp. MR-4 hypothetical protein YP_733149.1 1179867 D 60480 CDS YP_733150.1 113969357 4251051 1180932..1181408 1 NC_008321.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO1191 transcription elongation factor GreA; transcription elongation factor GreA 1181408 4251051 Shewmr4_1013 Shewanella sp. MR-4 transcription elongation factor GreA YP_733150.1 1180932 D 60480 CDS YP_733151.1 113969358 4251052 1181707..1182234 1 NC_008321.1 KEGG: son:SO1192 hypothetical protein; hypothetical protein 1182234 4251052 Shewmr4_1014 Shewanella sp. MR-4 hypothetical protein YP_733151.1 1181707 D 60480 CDS YP_733152.1 113969359 4251053 1182612..1184486 1 NC_008321.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1184486 secD 4251053 secD Shewanella sp. MR-4 preprotein translocase subunit SecD YP_733152.1 1182612 D 60480 CDS YP_733153.1 113969360 4251054 1184489..1185373 1 NC_008321.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1185373 secF 4251054 secF Shewanella sp. MR-4 preprotein translocase subunit SecF YP_733153.1 1184489 D 60480 CDS YP_733154.1 113969361 4251055 complement(1185431..1185730) 1 NC_008321.1 PFAM: protein of unknown function UPF0044; KEGG: son:SO1195 putative RNA-binding protein containing KH domain; hypothetical protein 1185730 4251055 Shewmr4_1017 Shewanella sp. MR-4 hypothetical protein YP_733154.1 1185431 R 60480 CDS YP_733155.1 113969362 4251091 1185821..1186450 1 NC_008321.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 1186450 rrmJ 4251091 rrmJ Shewanella sp. MR-4 23S rRNA methyltransferase J YP_733155.1 1185821 D 60480 CDS YP_733156.1 113969363 4251092 1186480..1188453 1 NC_008321.1 KEGG: son:SO1197 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; membrane protease FtsH catalytic subunit 1188453 4251092 Shewmr4_1019 Shewanella sp. MR-4 membrane protease FtsH catalytic subunit YP_733156.1 1186480 D 60480 CDS YP_733157.1 113969364 4251093 1188612..1189445 1 NC_008321.1 KEGG: son:SO1198 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 1189445 4251093 Shewmr4_1020 Shewanella sp. MR-4 dihydropteroate synthase YP_733157.1 1188612 D 60480 CDS YP_733158.1 113969365 4251094 1189520..1190857 1 NC_008321.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1190857 glmM 4251094 glmM Shewanella sp. MR-4 phosphoglucosamine mutase YP_733158.1 1189520 D 60480 CDS YP_733159.1 113969366 4251095 1191051..1191833 1 NC_008321.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1191833 4251095 Shewmr4_1022 Shewanella sp. MR-4 triosephosphate isomerase YP_733159.1 1191051 D 60480 CDS YP_733160.1 113969367 4251096 1191835..1192167 1 NC_008321.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: son:SO1201 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 1192167 secG 4251096 secG Shewanella sp. MR-4 preprotein translocase subunit SecG YP_733160.1 1191835 D 60480 CDS YP_733161.1 113969368 4251097 1192594..1193049 1 NC_008321.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1193049 4251097 Shewmr4_1024 Shewanella sp. MR-4 hypothetical protein YP_733161.1 1192594 D 60480 CDS YP_733162.1 113969369 4251098 1193079..1194578 1 NC_008321.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1194578 nusA 4251098 nusA Shewanella sp. MR-4 transcription elongation factor NusA YP_733162.1 1193079 D 60480 CDS YP_733163.1 113969370 4251099 1194604..1197261 1 NC_008321.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1197261 infB 4251099 infB Shewanella sp. MR-4 translation initiation factor IF-2 YP_733163.1 1194604 D 60480 CDS YP_733164.1 113969371 4251100 1197324..1197764 1 NC_008321.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1197764 rbfA 4251100 rbfA Shewanella sp. MR-4 ribosome-binding factor A YP_733164.1 1197324 D 60480 CDS YP_733165.1 113969372 4251101 1197764..1198717 1 NC_008321.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1198717 truB 4251101 truB Shewanella sp. MR-4 tRNA pseudouridine synthase B YP_733165.1 1197764 D 60480 CDS YP_733166.1 113969373 4251102 1198843..1199112 1 NC_008321.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1199112 rpsO 4251102 rpsO Shewanella sp. MR-4 30S ribosomal protein S15 YP_733166.1 1198843 D 60480 CDS YP_733167.1 113969374 4251103 complement(1199200..1201254) 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1208 GGDEF domain protein; diguanylate cyclase/phosphodiesterase 1201254 4251103 Shewmr4_1030 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase YP_733167.1 1199200 R 60480 CDS YP_733168.1 113969375 4251104 1201448..1203547 1 NC_008321.1 KEGG: son:SO1209 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 1203547 4251104 Shewmr4_1031 Shewanella sp. MR-4 polynucleotide phosphorylase/polyadenylase YP_733168.1 1201448 D 60480 CDS YP_733169.1 113969376 4251105 1203739..1204641 1 NC_008321.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 1204641 4251105 Shewmr4_1032 Shewanella sp. MR-4 lipoprotein NlpI YP_733169.1 1203739 D 60480 CDS YP_733170.1 113969377 4251106 1204741..1206321 1 NC_008321.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1206321 prfC 4251106 prfC Shewanella sp. MR-4 peptide chain release factor 3 YP_733170.1 1204741 D 60480 CDS YP_733171.1 113969378 4251107 1206582..1207349 1 NC_008321.1 PFAM: TatD-related deoxyribonuclease; KEGG: son:SO1213 hydrolase, TatD family; TatD-related deoxyribonuclease 1207349 4251107 Shewmr4_1034 Shewanella sp. MR-4 TatD-related deoxyribonuclease YP_733171.1 1206582 D 60480 CDS YP_733172.1 113969379 4251108 1207526..1208785 1 NC_008321.1 TIGRFAM: nucleoside transporter; PFAM: Na dependent nucleoside transporter; nucleoside recognition domain protein; Na dependent nucleoside transporter domain protein; KEGG: son:SO1214 NupC family protein; nucleoside transporter 1208785 4251108 Shewmr4_1035 Shewanella sp. MR-4 nucleoside transporter YP_733172.1 1207526 D 60480 CDS YP_733173.1 113969380 4251109 1209134..1209973 1 NC_008321.1 PFAM: nucleoside-specific channel-forming protein, Tsx; KEGG: son:SO1215 outer membrane protein OmpK, putative; nucleoside-specific channel-forming protein, Tsx 1209973 4251109 Shewmr4_1036 Shewanella sp. MR-4 nucleoside-specific channel-forming protein, Tsx YP_733173.1 1209134 D 60480 CDS YP_733174.1 113969381 4251110 1210386..1211156 1 NC_008321.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1211156 4251110 Shewmr4_1037 Shewanella sp. MR-4 deoxyribose-phosphate aldolase YP_733174.1 1210386 D 60480 CDS YP_733175.1 113969382 4251111 1211341..1212672 1 NC_008321.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 1212672 deoA 4251111 deoA Shewanella sp. MR-4 thymidine phosphorylase YP_733175.1 1211341 D 60480 CDS YP_733176.1 113969383 4251112 1212682..1213896 1 NC_008321.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1213896 4251112 Shewmr4_1039 Shewanella sp. MR-4 phosphopentomutase YP_733176.1 1212682 D 60480 CDS YP_733177.1 113969384 4251113 1213988..1214698 1 NC_008321.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1214698 deoD 4251113 deoD Shewanella sp. MR-4 purine nucleoside phosphorylase YP_733177.1 1213988 D 60480 CDS YP_733178.1 113969385 4251114 complement(1214865..1216085) 1 NC_008321.1 KEGG: son:SO1222 membrane protein; membrane protein 1216085 4251114 Shewmr4_1041 Shewanella sp. MR-4 membrane protein YP_733178.1 1214865 R 60480 CDS YP_733179.1 113969386 4251115 1216165..1217157 1 NC_008321.1 KEGG: son:SO1223 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase 1217157 4251115 Shewmr4_1042 Shewanella sp. MR-4 phosphoserine phosphatase YP_733179.1 1216165 D 60480 CDS YP_733180.1 113969387 4251116 1217240..1218241 1 NC_008321.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO1224 hypothetical protein; alpha/beta hydrolase fold domain-containing protein 1218241 4251116 Shewmr4_1043 Shewanella sp. MR-4 alpha/beta hydrolase fold domain-containing protein YP_733180.1 1217240 D 60480 CDS YP_733181.1 113969388 4251117 complement(1218258..1220630) 1 NC_008321.1 PFAM: type IV pilus assembly PilZ; KEGG: son:SO1225 hypothetical protein; type IV pilus assembly PilZ 1220630 4251117 Shewmr4_1044 Shewanella sp. MR-4 type IV pilus assembly PilZ YP_733181.1 1218258 R 60480 CDS YP_733182.1 113969389 4251118 1220732..1222096 1 NC_008321.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1222096 4251118 Shewmr4_1045 Shewanella sp. MR-4 DNA repair protein RadA YP_733182.1 1220732 D 60480 CDS YP_733183.1 113969390 4251119 complement(1222180..1222572) 1 NC_008321.1 PFAM: type IV pilus assembly PilZ; KEGG: son:SO1227 hypothetical protein; type IV pilus assembly PilZ 1222572 4251119 Shewmr4_1046 Shewanella sp. MR-4 type IV pilus assembly PilZ YP_733183.1 1222180 R 60480 CDS YP_733184.1 113969391 4251120 1222752..1223462 1 NC_008321.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 1223462 4251120 Shewmr4_1047 Shewanella sp. MR-4 DNA-binding transcriptional regulator TorR YP_733184.1 1222752 D 60480 CDS YP_733185.1 113969392 4251121 complement(1223481..1224548) 1 NC_008321.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 1224548 4251121 Shewmr4_1048 Shewanella sp. MR-4 TMAO reductase system periplasmic protein TorT YP_733185.1 1223481 R 60480 CDS YP_733186.1 113969393 4251122 1224605..1227658 1 NC_008321.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: son:SO1230 sensor histidine kinase/response regulator TorS; multi-sensor hybrid histidine kinase 1227658 4251122 Shewmr4_1049 Shewanella sp. MR-4 multi-sensor hybrid histidine kinase YP_733186.1 1224605 D 60480 CDS YP_733187.1 113969394 4251123 complement(1227946..1228575) 1 NC_008321.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 1228575 torD 4251123 torD Shewanella sp. MR-4 chaperone protein TorD YP_733187.1 1227946 R 60480 CDS YP_733188.1 113969395 4251124 complement(1228643..1231132) 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: son:SO1232 trimethylamine-N-oxide reductase; trimethylamine-N-oxide reductase TorA 1231132 4251124 Shewmr4_1051 Shewanella sp. MR-4 trimethylamine-N-oxide reductase TorA YP_733188.1 1228643 R 60480 CDS YP_733189.1 113969396 4251125 complement(1231148..1232326) 1 NC_008321.1 TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO1233 tetraheme cytochrome c; trimethylamine-N-oxide reductase c-type cytochrome TorC 1232326 4251125 Shewmr4_1052 Shewanella sp. MR-4 trimethylamine-N-oxide reductase c-type cytochrome TorC YP_733189.1 1231148 R 60480 CDS YP_733190.1 113969397 4250758 complement(1232353..1232523) 1 NC_008321.1 PFAM: periplasmic nitrate reductase NapE; KEGG: son:SO1234 warning TorE protein; periplasmic nitrate reductase NapE 1232523 4250758 Shewmr4_1053 Shewanella sp. MR-4 periplasmic nitrate reductase NapE YP_733190.1 1232353 R 60480 CDS YP_733191.1 113969398 4250759 1233041..1234393 1 NC_008321.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO1236 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 1234393 4250759 Shewmr4_1054 Shewanella sp. MR-4 xanthine/uracil/vitamin C permease YP_733191.1 1233041 D 60480 CDS YP_733192.1 113969399 4250760 complement(1234431..1234862) 1 NC_008321.1 PFAM: CBS domain containing protein; KEGG: son:SO1237 acetoin utilization protein AcuB, putative; CBS domain-containing protein 1234862 4250760 Shewmr4_1055 Shewanella sp. MR-4 CBS domain-containing protein YP_733192.1 1234431 R 60480 CDS YP_733193.1 113969400 4250761 complement(1234964..1236853) 1 NC_008321.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO1238 acyltransferase family protein; phospholipid/glycerol acyltransferase 1236853 4250761 Shewmr4_1056 Shewanella sp. MR-4 phospholipid/glycerol acyltransferase YP_733193.1 1234964 R 60480 CDS YP_733194.1 113969401 4250762 complement(1236856..1237938) 1 NC_008321.1 PFAM: metallophosphoesterase; KEGG: son:SO1239 hypothetical protein; metallophosphoesterase 1237938 4250762 Shewmr4_1057 Shewanella sp. MR-4 metallophosphoesterase YP_733194.1 1236856 R 60480 CDS YP_733195.1 113969402 4250763 complement(1239748..1241106) 1 NC_008321.1 PFAM: nucleoside recognition domain protein; KEGG: son:SO1245 hypothetical protein; nucleoside recognition domain-containing protein 1241106 4250763 Shewmr4_1058 Shewanella sp. MR-4 nucleoside recognition domain-containing protein YP_733195.1 1239748 R 60480 CDS YP_733196.1 113969403 4250764 1241810..1242517 1 NC_008321.1 KEGG: son:SO1247 hypothetical protein; hypothetical protein 1242517 4250764 Shewmr4_1059 Shewanella sp. MR-4 hypothetical protein YP_733196.1 1241810 D 60480 CDS YP_733197.1 113969404 4250765 complement(1242547..1243416) 1 NC_008321.1 PFAM: peptidase U32; KEGG: son:SO1248 hypothetical peptidase; peptidase U32 1243416 4250765 Shewmr4_1060 Shewanella sp. MR-4 peptidase U32 YP_733197.1 1242547 R 60480 CDS YP_733198.1 113969405 4250766 complement(1243447..1244448) 1 NC_008321.1 PFAM: peptidase U32; KEGG: son:SO1249 peptidase, U32 family; peptidase U32 1244448 4250766 Shewmr4_1061 Shewanella sp. MR-4 peptidase U32 YP_733198.1 1243447 R 60480 CDS YP_733199.1 113969406 4250767 1244587..1245123 1 NC_008321.1 PFAM: Sterol-binding domain protein; KEGG: son:SO1250 hypothetical protein; sterol-binding domain-containing protein 1245123 4250767 Shewmr4_1062 Shewanella sp. MR-4 sterol-binding domain-containing protein YP_733199.1 1244587 D 60480 CDS YP_733200.1 113969407 4250768 complement(1245209..1245460) 1 NC_008321.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1251 ferredoxin, 4Fe-4S; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1245460 4250768 Shewmr4_1063 Shewanella sp. MR-4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_733200.1 1245209 R 60480 CDS YP_733201.1 113969408 4250769 complement(1245464..1246828) 1 NC_008321.1 PFAM: peptidase U32; KEGG: son:SO1252 peptidase, U32 family; peptidase U32 1246828 4250769 Shewmr4_1064 Shewanella sp. MR-4 peptidase U32 YP_733201.1 1245464 R 60480 CDS YP_733202.1 113969409 4250770 1247180..1248019 1 NC_008321.1 KEGG: son:SO1254 hypothetical protein; putative signal transduction protein 1248019 4250770 Shewmr4_1065 Shewanella sp. MR-4 putative signal transduction protein YP_733202.1 1247180 D 60480 CDS YP_733203.1 113969410 4250771 1248105..1249631 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO1255 cyclic nucleotide phosphodiesterase, putative; diguanylate cyclase/phosphodiesterase 1249631 4250771 Shewmr4_1066 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase YP_733203.1 1248105 D 60480 CDS YP_733204.1 113969411 4250772 complement(1249620..1250033) 1 NC_008321.1 PFAM: thioesterase superfamily protein; KEGG: son:SO1256 hypothetical 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 1250033 4250772 Shewmr4_1067 Shewanella sp. MR-4 thioesterase superfamily protein YP_733204.1 1249620 R 60480 CDS YP_733205.1 113969412 4250773 complement(1250221..1251477) 1 NC_008321.1 PFAM: adenylosuccinate synthetase; KEGG: son:SO1258 adenylosuccinate synthetase, putative; adenylosuccinate synthetase 1251477 4250773 Shewmr4_1068 Shewanella sp. MR-4 adenylosuccinate synthetase YP_733205.1 1250221 R 60480 CDS YP_733206.1 113969413 4250774 1251594..1252502 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1259 transcriptional regulator, LysR family; LysR family transcriptional regulator 1252502 4250774 Shewmr4_1069 Shewanella sp. MR-4 LysR family transcriptional regulator YP_733206.1 1251594 D 60480 CDS YP_733207.1 113969414 4250775 complement(1252518..1253336) 1 NC_008321.1 SMART: extracellular solute-binding protein, family 3; KEGG: son:SO1260 hypothetical amino acid ABC transporter; extracellular solute-binding protein 1253336 4250775 Shewmr4_1070 Shewanella sp. MR-4 extracellular solute-binding protein YP_733207.1 1252518 R 60480 CDS YP_733208.1 113969415 4250776 1253540..1253968 1 NC_008321.1 PFAM: OsmC family protein; KEGG: son:SO3495 hypothetical protein; OsmC family protein 1253968 4250776 Shewmr4_1071 Shewanella sp. MR-4 OsmC family protein YP_733208.1 1253540 D 60480 CDS YP_733209.1 113969416 4250777 complement(1254057..1254677) 1 NC_008321.1 PFAM: regulatory protein, TetR; KEGG: son:SO3494 transcriptional regulator, TetR family; TetR family transcriptional regulator 1254677 4250777 Shewmr4_1072 Shewanella sp. MR-4 TetR family transcriptional regulator YP_733209.1 1254057 R 60480 CDS YP_733210.1 113969417 4250778 1255040..1256278 1 NC_008321.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3493 RND multidrug efflux membrane fusion protein MexE; RND family efflux transporter MFP subunit 1256278 4250778 Shewmr4_1073 Shewanella sp. MR-4 RND family efflux transporter MFP subunit YP_733210.1 1255040 D 60480 CDS YP_733211.1 113969418 4250779 1256292..1259441 1 NC_008321.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO3492 RND multidrug efflux transporter MexF; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1259441 4250779 Shewmr4_1074 Shewanella sp. MR-4 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_733211.1 1256292 D 60480 CDS YP_733212.1 113969419 4250780 1259567..1260844 1 NC_008321.1 KEGG: son:SO3491 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 1260844 4250780 Shewmr4_1075 Shewanella sp. MR-4 metal dependent phosphohydrolase YP_733212.1 1259567 D 60480 CDS YP_733213.1 113969420 4250781 1261114..1261761 1 NC_008321.1 KEGG: sdn:Sden_0376 hypothetical protein; hypothetical protein 1261761 4250781 Shewmr4_1076 Shewanella sp. MR-4 hypothetical protein YP_733213.1 1261114 D 60480 CDS YP_733214.1 113969421 4250782 1261751..1264048 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: sdn:Sden_0375 GGDEF domain; diguanylate cyclase/phosphodiesterase 1264048 4250782 Shewmr4_1077 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase YP_733214.1 1261751 D 60480 CDS YP_733215.1 113969422 4250783 1264115..1264993 1 NC_008321.1 KEGG: sdn:Sden_0374 hypothetical protein; hypothetical protein 1264993 4250783 Shewmr4_1078 Shewanella sp. MR-4 hypothetical protein YP_733215.1 1264115 D 60480 CDS YP_733216.1 113969423 4250784 1264990..1265481 1 NC_008321.1 PFAM: globin; KEGG: sdn:Sden_0373 globin; globin 1265481 4250784 Shewmr4_1079 Shewanella sp. MR-4 globin YP_733216.1 1264990 D 60480 CDS YP_733217.1 113969424 4250785 complement(1265538..1266092) 1 NC_008321.1 PFAM: protein of unknown function DUF88; KEGG: son:SO3490 hypothetical protein; hypothetical protein 1266092 4250785 Shewmr4_1080 Shewanella sp. MR-4 hypothetical protein YP_733217.1 1265538 R 60480 CDS YP_733218.1 113969425 4250786 complement(1266160..1266927) 1 NC_008321.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO3488 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 1266927 4250786 Shewmr4_1081 Shewanella sp. MR-4 AraC family transcriptional regulator YP_733218.1 1266160 R 60480 CDS YP_733219.1 113969426 4250787 1267072..1268259 1 NC_008321.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3485 drug resistance transporter, Bcr/CflA family protein; Bcr/CflA subfamily drug resistance transporter 1268259 4250787 Shewmr4_1082 Shewanella sp. MR-4 Bcr/CflA subfamily drug resistance transporter YP_733219.1 1267072 D 60480 CDS YP_733220.1 113969427 4250788 complement(1268342..1271497) 1 NC_008321.1 PFAM: acriflavin resistance protein; KEGG: son:SO3484 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 1271497 4250788 Shewmr4_1083 Shewanella sp. MR-4 acriflavin resistance protein YP_733220.1 1268342 R 60480 CDS YP_733221.1 113969428 4250789 complement(1271497..1272609) 1 NC_008321.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3483 HlyD family secretion protein; RND family efflux transporter MFP subunit 1272609 4250789 Shewmr4_1084 Shewanella sp. MR-4 RND family efflux transporter MFP subunit YP_733221.1 1271497 R 60480 CDS YP_733222.1 113969429 4250790 complement(1272809..1273603) 1 NC_008321.1 KEGG: son:SO3481 hypothetical protein; hypothetical protein 1273603 4250790 Shewmr4_1085 Shewanella sp. MR-4 hypothetical protein YP_733222.1 1272809 R 60480 CDS YP_733223.1 113969430 4250791 complement(1273851..1275017) 1 NC_008321.1 PFAM: metallophosphoesterase; SMART: serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; KEGG: son:SO3480 hypothetical protein phosphatase; metallophosphoesterase 1275017 4250791 Shewmr4_1086 Shewanella sp. MR-4 metallophosphoesterase YP_733223.1 1273851 R 60480 CDS YP_733224.1 113969431 4250792 1275549..1279220 1 NC_008321.1 KEGG: sdn:Sden_2716 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein 1279220 4250792 Shewmr4_1087 Shewanella sp. MR-4 type IV pilin biogenesis protein YP_733224.1 1275549 D 60480 CDS YP_733225.1 113969432 4251056 1279243..1279578 1 NC_008321.1 KEGG: son:SO3476 hypothetical protein; hypothetical protein 1279578 4251056 Shewmr4_1088 Shewanella sp. MR-4 hypothetical protein YP_733225.1 1279243 D 60480 CDS YP_733226.1 113969433 4251057 complement(1279707..1280360) 1 NC_008321.1 KEGG: son:SO3475 putative protein-disulfide isomerase; putative protein-disulfide isomerase 1280360 4251057 Shewmr4_1089 Shewanella sp. MR-4 putative protein-disulfide isomerase YP_733226.1 1279707 R 60480 CDS YP_733227.1 113969434 4251058 complement(1280462..1281361) 1 NC_008321.1 PFAM: beta-lactamase domain protein; KEGG: son:SO3474 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 1281361 4251058 Shewmr4_1090 Shewanella sp. MR-4 beta-lactamase domain-containing protein YP_733227.1 1280462 R 60480 CDS YP_733228.1 113969435 4251059 1281551..1282474 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3473 transcriptional regulator, LysR family; LysR family transcriptional regulator 1282474 4251059 Shewmr4_1091 Shewanella sp. MR-4 LysR family transcriptional regulator YP_733228.1 1281551 D 60480 CDS YP_733229.1 113969436 4251060 1282734..1283741 1 NC_008321.1 PFAM: conserved hypothetical protein 341; KEGG: rpd:RPD_2005 conserved hypothetical protein 341; hypothetical protein 1283741 4251060 Shewmr4_1092 Shewanella sp. MR-4 hypothetical protein YP_733229.1 1282734 D 60480 CDS YP_733230.1 113969437 4251061 complement(1283818..1285485) 1 NC_008321.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1285485 4251061 Shewmr4_1093 Shewanella sp. MR-4 putative ABC transporter ATP-binding protein YP_733230.1 1283818 R 60480 CDS YP_733231.1 113969438 4251062 1285675..1286928 1 NC_008321.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1286928 glyA 4251062 glyA Shewanella sp. MR-4 serine hydroxymethyltransferase YP_733231.1 1285675 D 60480 CDS YP_733232.1 113969439 4251063 1287139..1287588 1 NC_008321.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone domain protein; KEGG: son:SO3470 ATP-cone domain protein; transcriptional regulator NrdR 1287588 nrdR 4251063 nrdR Shewanella sp. MR-4 transcriptional regulator NrdR YP_733232.1 1287139 D 60480 CDS YP_733233.1 113969440 4251064 1287676..1288821 1 NC_008321.1 KEGG: son:SO3469 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase 1288821 4251064 Shewmr4_1096 Shewanella sp. MR-4 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase YP_733233.1 1287676 D 60480 CDS YP_733234.1 113969441 4251065 1288829..1289485 1 NC_008321.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1289485 4251065 Shewmr4_1097 Shewanella sp. MR-4 riboflavin synthase subunit alpha YP_733234.1 1288829 D 60480 CDS YP_733235.1 113969442 4251066 1289553..1290656 1 NC_008321.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: son:SO3467 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative; 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II 1290656 4251066 Shewmr4_1098 Shewanella sp. MR-4 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II YP_733235.1 1289553 D 60480 CDS YP_733236.1 113969443 4251067 1290797..1291273 1 NC_008321.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1291273 ribH 4251067 ribH Shewanella sp. MR-4 6,7-dimethyl-8-ribityllumazine synthase YP_733236.1 1290797 D 60480 CDS YP_733237.1 113969444 4251068 1291288..1291692 1 NC_008321.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1291692 nusB 4251068 nusB Shewanella sp. MR-4 transcription antitermination protein NusB YP_733237.1 1291288 D 60480 CDS YP_733238.1 113969445 4251069 1291771..1292727 1 NC_008321.1 KEGG: son:SO3464 thiamin-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 1292727 4251069 Shewmr4_1101 Shewanella sp. MR-4 thiamine-monophosphate kinase YP_733238.1 1291771 D 60480 CDS YP_733239.1 113969446 4251070 1292727..1293221 1 NC_008321.1 PFAM: phosphatidylglycerophosphatase A; KEGG: son:SO3463 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase 1293221 4251070 Shewmr4_1102 Shewanella sp. MR-4 phosphatidylglycerophosphatase YP_733239.1 1292727 D 60480 CDS YP_733240.1 113969447 4251071 complement(1293319..1294194) 1 NC_008321.1 PFAM: UspA domain protein; KEGG: ilo:IL1305 UspA-related nucleotide-binding protein; UspA domain-containing protein 1294194 4251071 Shewmr4_1103 Shewanella sp. MR-4 UspA domain-containing protein YP_733240.1 1293319 R 60480 CDS YP_733241.1 113969448 4251072 complement(1294585..1296243) 1 NC_008321.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: son:SO3462 DNA repair protein RecN; recombination and repair protein 1296243 4251072 Shewmr4_1104 Shewanella sp. MR-4 recombination and repair protein YP_733241.1 1294585 R 60480 CDS YP_733242.1 113969449 4251073 complement(1296373..1297335) 1 NC_008321.1 PFAM: Auxin Efflux Carrier; KEGG: son:SO3461 transporter, putative; auxin efflux carrier 1297335 4251073 Shewmr4_1105 Shewanella sp. MR-4 auxin efflux carrier YP_733242.1 1296373 R 60480 CDS YP_733243.1 113969450 4251074 1297610..1298509 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3460 transcriptional regulator, LysR family; LysR family transcriptional regulator 1298509 4251074 Shewmr4_1106 Shewanella sp. MR-4 LysR family transcriptional regulator YP_733243.1 1297610 D 60480 CDS YP_733244.1 113969451 4251075 complement(1298515..1298748) 1 NC_008321.1 KEGG: son:SO3459 hypothetical protein; hypothetical protein 1298748 4251075 Shewmr4_1107 Shewanella sp. MR-4 hypothetical protein YP_733244.1 1298515 R 60480 CDS YP_733245.1 113969452 4251076 complement(1298845..1299444) 1 NC_008321.1 PFAM: protein of unknown function DUF416; KEGG: son:SO3458 hypothetical protein; hypothetical protein 1299444 4251076 Shewmr4_1108 Shewanella sp. MR-4 hypothetical protein YP_733245.1 1298845 R 60480 CDS YP_733246.1 113969453 4251077 complement(1299419..1302226) 1 NC_008321.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 1302226 4251077 Shewmr4_1109 Shewanella sp. MR-4 hybrid sensory histidine kinase BarA YP_733246.1 1299419 R 60480 CDS YP_733247.1 113969454 4251078 1302286..1303677 1 NC_008321.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1303677 rumA 4251078 rumA Shewanella sp. MR-4 23S rRNA 5-methyluridine methyltransferase YP_733247.1 1302286 D 60480 CDS YP_733248.1 113969455 4251079 1303867..1306074 1 NC_008321.1 KEGG: son:SO3455 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I, SpoT/RelA 1306074 4251079 Shewmr4_1111 Shewanella sp. MR-4 (p)ppGpp synthetase I, SpoT/RelA YP_733248.1 1303867 D 60480 CDS YP_733249.1 113969456 4251080 complement(1306437..1306895) 1 NC_008321.1 hypothetical protein 1306895 4251080 Shewmr4_1112 Shewanella sp. MR-4 hypothetical protein YP_733249.1 1306437 R 60480 CDS YP_733250.1 113969457 4251081 1307669..1308547 1 NC_008321.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1308547 mazG 4251081 mazG Shewanella sp. MR-4 nucleoside triphosphate pyrophosphohydrolase YP_733250.1 1307669 D 60480 CDS YP_733251.1 113969458 4251082 1308664..1310304 1 NC_008321.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1310304 pyrG 4251082 pyrG Shewanella sp. MR-4 CTP synthetase YP_733251.1 1308664 D 60480 CDS YP_733252.1 113969459 4251083 1310518..1311813 1 NC_008321.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1311813 eno 4251083 eno Shewanella sp. MR-4 phosphopyruvate hydratase YP_733252.1 1310518 D 60480 CDS YP_733253.1 113969460 4251084 1311914..1312213 1 NC_008321.1 PFAM: Septum formation initiator; KEGG: son:SO3439 cell division protein FtsB; cell division protein FtsB 1312213 4251084 Shewmr4_1116 Shewanella sp. MR-4 cell division protein FtsB YP_733253.1 1311914 D 60480 CDS YP_733254.1 113969461 4251085 1312224..1312973 1 NC_008321.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1312973 ispD 4251085 ispD Shewanella sp. MR-4 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_733254.1 1312224 D 60480 CDS YP_733255.1 113969462 4251086 1313025..1313504 1 NC_008321.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1313504 ispF 4251086 ispF Shewanella sp. MR-4 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_733255.1 1313025 D 60480 CDS YP_733256.1 113969463 4251087 1313534..1314661 1 NC_008321.1 PFAM: tRNA pseudouridine synthase D, TruD; KEGG: son:SO3436 tRNA pseudouridine synthase D; pseudouridylate synthase 1314661 4251087 Shewmr4_1119 Shewanella sp. MR-4 pseudouridylate synthase YP_733256.1 1313534 D 60480 CDS YP_733257.1 113969464 4251088 1314658..1315407 1 NC_008321.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1315407 surE 4251088 surE Shewanella sp. MR-4 stationary phase survival protein SurE YP_733257.1 1314658 D 60480 CDS YP_733258.1 113969465 4251089 1315404..1316039 1 NC_008321.1 KEGG: son:SO3434 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1316039 4251089 Shewmr4_1121 Shewanella sp. MR-4 protein-L-isoaspartate O-methyltransferase YP_733258.1 1315404 D 60480 CDS YP_733259.1 113969466 4251090 1316137..1317033 1 NC_008321.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: son:SO3433 lipoprotein NlpD; peptidase M23B 1317033 4251090 Shewmr4_1122 Shewanella sp. MR-4 peptidase M23B YP_733259.1 1316137 D 60480 CDS YP_733260.1 113969467 4251791 1317114..1318094 1 NC_008321.1 TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: son:SO3432 RNA polymerase sigma-38 factor; RNA polymerase, sigma 28 subunit 1318094 4251791 Shewmr4_1123 Shewanella sp. MR-4 RNA polymerase, sigma 28 subunit YP_733260.1 1317114 D 60480 CDS YP_733261.1 113969468 4251792 complement(1318235..1320820) 1 NC_008321.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1320820 4251792 Shewmr4_1124 Shewanella sp. MR-4 DNA mismatch repair protein MutS YP_733261.1 1318235 R 60480 CDS YP_733262.1 113969469 4251793 1321203..1322276 1 NC_008321.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1322276 recA 4251793 recA Shewanella sp. MR-4 recombinase A YP_733262.1 1321203 D 60480 CDS YP_733263.1 113969470 4251794 1322390..1322761 1 NC_008321.1 PFAM: regulatory protein RecX; KEGG: son:SO3429 regulatory protein RecX; regulatory protein RecX 1322761 4251794 Shewmr4_1126 Shewanella sp. MR-4 regulatory protein RecX YP_733263.1 1322390 D 60480 CDS YP_733264.1 113969471 4251795 1323037..1325661 1 NC_008321.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1325661 alaS 4251795 alaS Shewanella sp. MR-4 alanyl-tRNA synthetase YP_733264.1 1323037 D 60480 CDS YP_733265.1 113969472 4251796 1325671..1326927 1 NC_008321.1 KEGG: son:SO3427 aspartokinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; aspartate kinase 1326927 4251796 Shewmr4_1128 Shewanella sp. MR-4 aspartate kinase YP_733265.1 1325671 D 60480 CDS YP_733266.1 113969473 4251797 1327046..1327243 1 NC_008321.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1327243 4251797 Shewmr4_1129 Shewanella sp. MR-4 carbon storage regulator YP_733266.1 1327046 D 60480 CDS YP_733267.1 113969474 4251798 complement(1328854..1331730) 1 NC_008321.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1331730 valS 4251798 valS Shewanella sp. MR-4 valyl-tRNA synthetase YP_733267.1 1328854 R 60480 CDS YP_733268.1 113969475 4251799 complement(1331746..1332210) 1 NC_008321.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: son:SO3423 DNA polymerase III, chi subunit; DNA polymerase III chi subunit, HolC 1332210 4251799 Shewmr4_1131 Shewanella sp. MR-4 DNA polymerase III chi subunit, HolC YP_733268.1 1331746 R 60480 CDS YP_733269.1 113969476 4251800 complement(1333353..1333709) 1 NC_008321.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3422 ribosomal subunit interface protein; sigma 54 modulation protein / SSU ribosomal protein S30P 1333709 4251800 Shewmr4_1132 Shewanella sp. MR-4 sigma 54 modulation protein / SSU ribosomal protein S30P YP_733269.1 1333353 R 60480 CDS YP_733270.1 113969477 4251801 1334007..1334696 1 NC_008321.1 PFAM: cytochrome B561; KEGG: son:SO3421 b-type cytochrome, putative; cytochrome B561 1334696 4251801 Shewmr4_1133 Shewanella sp. MR-4 cytochrome B561 YP_733270.1 1334007 D 60480 CDS YP_733271.1 113969478 4251802 complement(1334762..1335211) 1 NC_008321.1 PFAM: cytochrome c, class II; KEGG: son:SO3420 cytochrome c'; cytochrome c, class II 1335211 4251802 Shewmr4_1134 Shewanella sp. MR-4 cytochrome c, class II YP_733271.1 1334762 R 60480 CDS YP_733272.1 113969479 4251803 1335401..1335676 1 NC_008321.1 TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: son:SO3419 trp operon repressor; Trp operon repressor 1335676 4251803 Shewmr4_1135 Shewanella sp. MR-4 Trp operon repressor YP_733272.1 1335401 D 60480 CDS YP_733273.1 113969480 4251804 complement(1335707..1336084) 1 NC_008321.1 KEGG: son:SO3418 hypothetical protein; hypothetical protein 1336084 4251804 Shewmr4_1136 Shewanella sp. MR-4 hypothetical protein YP_733273.1 1335707 R 60480 CDS YP_733274.1 113969481 4251805 complement(1336277..1336939) 1 NC_008321.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3417 peptidyl-prolyl cis-trans isomerase SlyD; peptidylprolyl isomerase, FKBP-type 1336939 4251805 Shewmr4_1137 Shewanella sp. MR-4 peptidylprolyl isomerase, FKBP-type YP_733274.1 1336277 R 60480 CDS YP_733275.1 113969482 4251806 1337582..1340050 1 NC_008321.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1340050 thrA 4251806 thrA Shewanella sp. MR-4 bifunctional aspartokinase I/homoserine dehydrogenase I YP_733275.1 1337582 D 60480 CDS YP_733276.1 113969483 4251807 1340047..1340985 1 NC_008321.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1340985 4251807 Shewmr4_1139 Shewanella sp. MR-4 homoserine kinase YP_733276.1 1340047 D 60480 CDS YP_733277.1 113969484 4251808 1341051..1342334 1 NC_008321.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1342334 4251808 Shewmr4_1140 Shewanella sp. MR-4 threonine synthase YP_733277.1 1341051 D 60480 CDS YP_733278.1 113969485 4251809 1342600..1342893 1 NC_008321.1 hypothetical protein 1342893 4251809 Shewmr4_1141 Shewanella sp. MR-4 hypothetical protein YP_733278.1 1342600 D 60480 CDS YP_733279.1 113969486 4251810 1343063..1343941 1 NC_008321.1 PFAM: extracellular solute-binding protein, family 3; KEGG: son:SO3412 extracellular solute-binding proteins, family 3 protein; extracellular solute-binding protein 1343941 4251810 Shewmr4_1142 Shewanella sp. MR-4 extracellular solute-binding protein YP_733279.1 1343063 D 60480 CDS YP_733280.1 113969487 4251811 1344148..1347429 1 NC_008321.1 PFAM: peptidase S41; WD40 domain protein beta Propeller; SMART: PDZ/DHR/GLGF domain protein; KEGG: son:SO3411 protease, putative; peptidase S41 1347429 4251811 Shewmr4_1143 Shewanella sp. MR-4 peptidase S41 YP_733280.1 1344148 D 60480 CDS YP_733281.1 113969488 4251812 complement(1347536..1347958) 1 NC_008321.1 KEGG: son:SO3410 hypothetical protein; hypothetical protein 1347958 4251812 Shewmr4_1144 Shewanella sp. MR-4 hypothetical protein YP_733281.1 1347536 R 60480 CDS YP_733282.1 113969489 4251813 complement(1348088..1348525) 1 NC_008321.1 PFAM: OsmC family protein; KEGG: son:SO3409 OsmC/Ohr family protein; OsmC family protein 1348525 4251813 Shewmr4_1145 Shewanella sp. MR-4 OsmC family protein YP_733282.1 1348088 R 60480 CDS YP_733283.1 113969490 4251814 complement(1348625..1348975) 1 NC_008321.1 KEGG: son:SO3408 hypothetical protein; hypothetical protein 1348975 4251814 Shewmr4_1146 Shewanella sp. MR-4 hypothetical protein YP_733283.1 1348625 R 60480 CDS YP_733284.1 113969491 4251815 complement(1348972..1350654) 1 NC_008321.1 PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO3407 hypothetical protein; PepSY-associated TM helix domain-containing protein 1350654 4251815 Shewmr4_1147 Shewanella sp. MR-4 PepSY-associated TM helix domain-containing protein YP_733284.1 1348972 R 60480 CDS YP_733285.1 113969492 4251816 complement(1350656..1351024) 1 NC_008321.1 KEGG: son:SO3406 hypothetical protein; hypothetical protein 1351024 4251816 Shewmr4_1148 Shewanella sp. MR-4 hypothetical protein YP_733285.1 1350656 R 60480 CDS YP_733286.1 113969493 4251817 1351448..1353016 1 NC_008321.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: son:SO3404 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1353016 4251817 Shewmr4_1149 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_733286.1 1351448 D 60480 CDS YP_733287.1 113969494 4251818 1353246..1353602 1 NC_008321.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein; sigma 54 modulation protein / SSU ribosomal protein S30P 1353602 4251818 Shewmr4_1150 Shewanella sp. MR-4 sigma 54 modulation protein / SSU ribosomal protein S30P YP_733287.1 1353246 D 60480 CDS YP_733288.1 113969495 4251819 complement(1353744..1354421) 1 NC_008321.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: sdn:Sden_3055 response regulator receiver; two component LuxR family transcriptional regulator 1354421 4251819 Shewmr4_1151 Shewanella sp. MR-4 two component LuxR family transcriptional regulator YP_733288.1 1353744 R 60480 CDS YP_733289.1 113969496 4251820 complement(1354466..1355626) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sdn:Sden_3054 histidine kinase, dimerisation and phosphoacceptor region; putative signal transduction histidine kinase 1355626 4251820 Shewmr4_1152 Shewanella sp. MR-4 putative signal transduction histidine kinase YP_733289.1 1354466 R 60480 CDS YP_733290.1 113969497 4251821 1355962..1356507 1 NC_008321.1 PFAM: isochorismatase hydrolase; KEGG: pfl:PFL_2630 isochorismatase family protein; isochorismatase hydrolase 1356507 4251821 Shewmr4_1153 Shewanella sp. MR-4 isochorismatase hydrolase YP_733290.1 1355962 D 60480 CDS YP_733291.1 113969498 4251822 complement(1356563..1357285) 1 NC_008321.1 PFAM: protein of unknown function DUF28; KEGG: son:SO3401 hypothetical protein; hypothetical protein 1357285 4251822 Shewmr4_1154 Shewanella sp. MR-4 hypothetical protein YP_733291.1 1356563 R 60480 CDS YP_733292.1 113969499 4251823 1357674..1359245 1 NC_008321.1 PFAM: chemotaxis sensory transducer; KEGG: cps:CPS_4961 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1359245 4251823 Shewmr4_1155 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_733292.1 1357674 D 60480 CDS YP_733293.1 113969500 4251824 1359561..1359785 1 NC_008321.1 KEGG: son:SO3395 hypothetical protein; hypothetical protein 1359785 4251824 Shewmr4_1156 Shewanella sp. MR-4 hypothetical protein YP_733293.1 1359561 D 60480 CDS YP_733294.1 113969501 4251825 complement(1359889..1360470) 1 NC_008321.1 PFAM: regulatory protein, TetR; KEGG: son:SO3393 transcriptional regulator, TetR family; TetR family transcriptional regulator 1360470 4251825 Shewmr4_1157 Shewanella sp. MR-4 TetR family transcriptional regulator YP_733294.1 1359889 R 60480 CDS YP_733295.1 113969502 4251442 1360600..1361667 1 NC_008321.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: son:SO3392 oxidoreductase, FMN-binding; NADH:flavin oxidoreductase/NADH oxidase 1361667 4251442 Shewmr4_1158 Shewanella sp. MR-4 NADH:flavin oxidoreductase/NADH oxidase YP_733295.1 1360600 D 60480 CDS YP_733296.1 113969503 4251443 complement(1361735..1364152) 1 NC_008321.1 KEGG: son:SO3391 ATP-dependent protease, putative; ATP-dependent protease 1364152 4251443 Shewmr4_1159 Shewanella sp. MR-4 ATP-dependent protease YP_733296.1 1361735 R 60480 CDS YP_733297.1 113969504 4251444 1364552..1367188 1 NC_008321.1 KEGG: son:SO3389 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1367188 4251444 Shewmr4_1160 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_733297.1 1364552 D 60480 CDS YP_733298.1 113969505 4251445 1367338..1368567 1 NC_008321.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO3388 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase domain-containing protein 1368567 4251445 Shewmr4_1161 Shewanella sp. MR-4 DEAD/DEAH box helicase domain-containing protein YP_733298.1 1367338 D 60480 CDS YP_733299.1 113969506 4251446 complement(1368831..1369340) 1 NC_008321.1 KEGG: son:SO3387 hypothetical protein; hypothetical protein 1369340 4251446 Shewmr4_1162 Shewanella sp. MR-4 hypothetical protein YP_733299.1 1368831 R 60480 CDS YP_733300.1 113969507 4251447 1369542..1370495 1 NC_008321.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: son:SO3386 hypothetical protein; hypothetical protein 1370495 4251447 Shewmr4_1163 Shewanella sp. MR-4 hypothetical protein YP_733300.1 1369542 D 60480 CDS YP_733301.1 113969508 4251448 1370569..1371654 1 NC_008321.1 PFAM: regulatory protein, MerR; KEGG: son:SO3385 transcriptional regulator, MerR family; MerR family transcriptional regulator 1371654 4251448 Shewmr4_1164 Shewanella sp. MR-4 MerR family transcriptional regulator YP_733301.1 1370569 D 60480 CDS YP_733302.1 113969509 4251449 1371647..1373128 1 NC_008321.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: son:SO3384 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase type I 1373128 4251449 Shewmr4_1165 Shewanella sp. MR-4 deoxyribodipyrimidine photo-lyase type I YP_733302.1 1371647 D 60480 CDS YP_733303.1 113969510 4251450 1373174..1373620 1 NC_008321.1 KEGG: son:SO3383 transcriptional regulator-related protein; transcriptional regulator-like protein 1373620 4251450 Shewmr4_1166 Shewanella sp. MR-4 transcriptional regulator-like protein YP_733303.1 1373174 D 60480 CDS YP_733304.1 113969511 4251451 1373620..1374420 1 NC_008321.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO3382 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 1374420 4251451 Shewmr4_1167 Shewanella sp. MR-4 short-chain dehydrogenase/reductase SDR YP_733304.1 1373620 D 60480 CDS YP_733305.1 113969512 4251452 1374417..1375667 1 NC_008321.1 PFAM: amine oxidase; KEGG: son:SO3381 hypothetical protein; amine oxidase 1375667 4251452 Shewmr4_1168 Shewanella sp. MR-4 amine oxidase YP_733305.1 1374417 D 60480 CDS YP_733306.1 113969513 4251453 1375664..1376455 1 NC_008321.1 PFAM: protein of unknown function DUF1365; KEGG: son:SO3380 hypothetical protein; hypothetical protein 1376455 4251453 Shewmr4_1169 Shewanella sp. MR-4 hypothetical protein YP_733306.1 1375664 D 60480 CDS YP_733307.1 113969514 4251454 1376457..1377713 1 NC_008321.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO3379 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1377713 4251454 Shewmr4_1170 Shewanella sp. MR-4 cyclopropane-fatty-acyl-phospholipid synthase YP_733307.1 1376457 D 60480 CDS YP_733308.1 113969515 4251455 1377726..1378271 1 NC_008321.1 KEGG: son:SO3378 hypothetical protein; hypothetical protein 1378271 4251455 Shewmr4_1171 Shewanella sp. MR-4 hypothetical protein YP_733308.1 1377726 D 60480 CDS YP_733309.1 113969516 4251456 1378326..1378898 1 NC_008321.1 KEGG: son:SO3377 hypothetical protein; hypothetical protein 1378898 4251456 Shewmr4_1172 Shewanella sp. MR-4 hypothetical protein YP_733309.1 1378326 D 60480 CDS YP_733310.1 113969517 4251457 1378886..1379434 1 NC_008321.1 KEGG: son:SO3376 hypothetical protein; hypothetical protein 1379434 4251457 Shewmr4_1173 Shewanella sp. MR-4 hypothetical protein YP_733310.1 1378886 D 60480 CDS YP_733311.1 113969518 4251458 1379499..1379720 1 NC_008321.1 KEGG: son:SO3374.1 hypothetical protein; hypothetical protein 1379720 4251458 Shewmr4_1174 Shewanella sp. MR-4 hypothetical protein YP_733311.1 1379499 D 60480 CDS YP_733312.1 113969519 4251459 complement(1379827..1380171) 1 NC_008321.1 KEGG: son:SO3374 hypothetical protein; hypothetical protein 1380171 4251459 Shewmr4_1175 Shewanella sp. MR-4 hypothetical protein YP_733312.1 1379827 R 60480 CDS YP_733313.1 113969520 4251460 1380325..1380510 1 NC_008321.1 hypothetical protein 1380510 4251460 Shewmr4_1176 Shewanella sp. MR-4 hypothetical protein YP_733313.1 1380325 D 60480 CDS YP_733314.1 113969521 4251461 1381833..1382384 1 NC_008321.1 PFAM: cytochrome B561; KEGG: son:SO3371 hypothetical cytochrome B561; cytochrome B561 1382384 4251461 Shewmr4_1177 Shewanella sp. MR-4 cytochrome B561 YP_733314.1 1381833 D 60480 CDS YP_733315.1 113969522 4251462 1382389..1382964 1 NC_008321.1 PFAM: YceI family protein; KEGG: son:SO3370 hypothetical protein; hypothetical protein 1382964 4251462 Shewmr4_1178 Shewanella sp. MR-4 hypothetical protein YP_733315.1 1382389 D 60480 CDS YP_733316.1 113969523 4251463 complement(1383048..1383326) 1 NC_008321.1 PFAM: Fe(II) trafficking protein YggX; KEGG: son:SO3369 hypothetical protein; hypothetical protein 1383326 4251463 Shewmr4_1179 Shewanella sp. MR-4 hypothetical protein YP_733316.1 1383048 R 60480 CDS YP_733317.1 113969524 4251464 complement(1383336..1384454) 1 NC_008321.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: son:SO3368 A/G-specific adenine glycosylase; A/G-specific DNA-adenine glycosylase 1384454 4251464 Shewmr4_1180 Shewanella sp. MR-4 A/G-specific DNA-adenine glycosylase YP_733317.1 1383336 R 60480 CDS YP_733318.1 113969525 4251465 1384634..1385350 1 NC_008321.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1385350 trmB 4251465 trmB Shewanella sp. MR-4 tRNA (guanine-N(7)-)-methyltransferase YP_733318.1 1384634 D 60480 CDS YP_733319.1 113969526 4251466 1385396..1385722 1 NC_008321.1 PFAM: protein of unknown function DUF469; KEGG: son:SO3366 hypothetical protein; hypothetical protein 1385722 4251466 Shewmr4_1182 Shewanella sp. MR-4 hypothetical protein YP_733319.1 1385396 D 60480 CDS YP_733320.1 113969527 4251467 1385722..1386636 1 NC_008321.1 catalyzes the formation of glutamate from glutamine; glutaminase 1386636 4251467 Shewmr4_1183 Shewanella sp. MR-4 glutaminase YP_733320.1 1385722 D 60480 CDS YP_733321.1 113969528 4251468 1386815..1387636 1 NC_008321.1 KEGG: son:SO3364 hypothetical protein; hypothetical protein 1387636 4251468 Shewmr4_1184 Shewanella sp. MR-4 hypothetical protein YP_733321.1 1386815 D 60480 CDS YP_733322.1 113969529 4251469 1388056..1388997 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3363 transcriptional regulator, LysR family; LysR family transcriptional regulator 1388997 4251469 Shewmr4_1185 Shewanella sp. MR-4 LysR family transcriptional regulator YP_733322.1 1388056 D 60480 CDS YP_733323.1 113969530 4251470 complement(1389623..1391470) 1 NC_008321.1 PFAM: protein of unknown function DUF885; KEGG: son:SO3361 hypothetical protein; hypothetical protein 1391470 4251470 Shewmr4_1186 Shewanella sp. MR-4 hypothetical protein YP_733323.1 1389623 R 60480 CDS YP_733324.1 113969531 4251471 complement(1391888..1393045) 1 NC_008321.1 KEGG: son:SO3359 oxygen-independent coproporphyrinogen III oxidase, putative; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase 1393045 4251471 Shewmr4_1187 Shewanella sp. MR-4 putative oxygen-independent coproporphyrinogen III oxidase YP_733324.1 1391888 R 60480 CDS YP_733325.1 113969532 4251472 complement(1393045..1393662) 1 NC_008321.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 1393662 4251472 Shewmr4_1188 Shewanella sp. MR-4 putative deoxyribonucleotide triphosphate pyrophosphatase YP_733325.1 1393045 R 60480 CDS YP_733326.1 113969533 4251473 complement(1393823..1394257) 1 NC_008321.1 KEGG: son:SO3357 hypothetical protein; hypothetical protein 1394257 4251473 Shewmr4_1189 Shewanella sp. MR-4 hypothetical protein YP_733326.1 1393823 R 60480 CDS YP_733327.1 113969534 4251474 complement(1394326..1394616) 1 NC_008321.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF167; KEGG: son:SO3356 hypothetical protein; hypothetical protein 1394616 4251474 Shewmr4_1190 Shewanella sp. MR-4 hypothetical protein YP_733327.1 1394326 R 60480 CDS YP_733328.1 113969535 4251475 complement(1394616..1395164) 1 NC_008321.1 PFAM: protein of unknown function YGGT; KEGG: son:SO3355 hypothetical protein; hypothetical protein 1395164 4251475 Shewmr4_1191 Shewanella sp. MR-4 hypothetical protein YP_733328.1 1394616 R 60480 CDS YP_733329.1 113969536 4251476 complement(1395240..1396058) 1 NC_008321.1 KEGG: son:SO3354 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 1396058 4251476 Shewmr4_1192 Shewanella sp. MR-4 pyrroline-5-carboxylate reductase YP_733329.1 1395240 R 60480 CDS YP_733330.1 113969537 4251232 complement(1396283..1396999) 1 NC_008321.1 TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase domain protein; KEGG: son:SO3352 conserved hypothetical protein TIGR00044; hypothetical protein 1396999 4251232 Shewmr4_1193 Shewanella sp. MR-4 hypothetical protein YP_733330.1 1396283 R 60480 CDS YP_733331.1 113969538 4251233 1397035..1398072 1 NC_008321.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: son:SO3351 twitching motility protein PilT; pilus retraction ATPase PilT 1398072 4251233 Shewmr4_1194 Shewanella sp. MR-4 pilus retraction ATPase PilT YP_733331.1 1397035 D 60480 CDS YP_733332.1 113969539 4251234 1398082..1399194 1 NC_008321.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: son:SO3350 twitching motility protein PilU; twitching motility protein 1399194 4251234 Shewmr4_1195 Shewanella sp. MR-4 twitching motility protein YP_733332.1 1398082 D 60480 CDS YP_733333.1 113969540 4251235 1399293..1399904 1 NC_008321.1 PFAM: glutathione peroxidase; KEGG: son:SO3349 glutathione peroxidase, putative; glutathione peroxidase 1399904 4251235 Shewmr4_1196 Shewanella sp. MR-4 glutathione peroxidase YP_733333.1 1399293 D 60480 CDS YP_733334.1 113969541 4251236 1399974..1400957 1 NC_008321.1 KEGG: son:SO3348 ferrochelatase; TIGRFAM: ferrochelatase; PFAM: ferrochelatase; ferrochelatase 1400957 4251236 Shewmr4_1197 Shewanella sp. MR-4 ferrochelatase YP_733334.1 1399974 D 60480 CDS YP_733335.1 113969542 4251237 complement(1401019..1401444) 1 NC_008321.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1401444 4251237 Shewmr4_1198 Shewanella sp. MR-4 Holliday junction resolvase-like protein YP_733335.1 1401019 R 60480 CDS YP_733336.1 113969543 4251238 complement(1401475..1402038) 1 NC_008321.1 PFAM: protein of unknown function DUF179; KEGG: son:SO3346 putative transcriptional regulator; hypothetical protein 1402038 4251238 Shewmr4_1199 Shewanella sp. MR-4 hypothetical protein YP_733336.1 1401475 R 60480 CDS YP_733337.1 113969544 4251239 complement(1402107..1402436) 1 NC_008321.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 1402436 4251239 Shewmr4_1200 Shewanella sp. MR-4 translation initiation factor Sui1 YP_733337.1 1402107 R 60480 CDS YP_733338.1 113969545 4251240 complement(1402586..1402900) 1 NC_008321.1 KEGG: son:SO3344 hypothetical protein; hypothetical protein 1402900 4251240 Shewmr4_1201 Shewanella sp. MR-4 hypothetical protein YP_733338.1 1402586 R 60480 CDS YP_733339.1 113969546 4251241 1403080..1403640 1 NC_008321.1 KEGG: son:SO3343 hypothetical protein; hypothetical protein 1403640 4251241 Shewmr4_1202 Shewanella sp. MR-4 hypothetical protein YP_733339.1 1403080 D 60480 CDS YP_733340.1 113969547 4251242 1403994..1404635 1 NC_008321.1 PFAM: protein of unknown function UPF0126; KEGG: son:SO3342 hypothetical protein; hypothetical protein 1404635 4251242 Shewmr4_1203 Shewanella sp. MR-4 hypothetical protein YP_733340.1 1403994 D 60480 CDS YP_733341.1 113969548 4251243 complement(1404670..1405263) 1 NC_008321.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO3341 antioxidant, AhpC/TSA family; thiol peroxidase (atypical 2-Cys peroxiredoxin) 1405263 4251243 Shewmr4_1204 Shewanella sp. MR-4 thiol peroxidase (atypical 2-Cys peroxiredoxin) YP_733341.1 1404670 R 60480 CDS YP_733342.1 113969549 4251244 complement(1405375..1406202) 1 NC_008321.1 PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO3340 hypothetical small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 1406202 4251244 Shewmr4_1205 Shewanella sp. MR-4 mechanosensitive ion channel protein MscS YP_733342.1 1405375 R 60480 CDS YP_733343.1 113969550 4251245 complement(1406234..1406809) 1 NC_008321.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO3339 OmpA family protein; OmpA/MotB domain-containing protein 1406809 4251245 Shewmr4_1206 Shewanella sp. MR-4 OmpA/MotB domain-containing protein YP_733343.1 1406234 R 60480 CDS YP_733344.1 113969551 4251246 1407109..1408122 1 NC_008321.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO3338 L-allo-threonine aldolase; L-threonine aldolase 1408122 4251246 Shewmr4_1207 Shewanella sp. MR-4 L-threonine aldolase YP_733344.1 1407109 D 60480 CDS YP_733345.1 113969552 4251247 1408286..1409752 1 NC_008321.1 PFAM: KDPG and KHG aldolase; KEGG: son:SO3337 hypothetical protein; putative signal transduction protein 1409752 4251247 Shewmr4_1208 Shewanella sp. MR-4 putative signal transduction protein YP_733345.1 1408286 D 60480 CDS YP_733346.1 113969553 4251248 complement(1409757..1410296) 1 NC_008321.1 KEGG: son:SO3336 hypothetical protein; hypothetical protein 1410296 4251248 Shewmr4_1209 Shewanella sp. MR-4 hypothetical protein YP_733346.1 1409757 R 60480 CDS YP_733347.1 113969554 4251249 complement(1410348..1411172) 1 NC_008321.1 PFAM: protein of unknown function DUF980; KEGG: son:SO3335 hypothetical protein; hypothetical protein 1411172 4251249 Shewmr4_1210 Shewanella sp. MR-4 hypothetical protein YP_733347.1 1410348 R 60480 CDS YP_733348.1 113969555 4251250 complement(1411270..1413006) 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3334 GGDEF family protein; diguanylate cyclase 1413006 4251250 Shewmr4_1211 Shewanella sp. MR-4 diguanylate cyclase YP_733348.1 1411270 R 60480 CDS YP_733349.1 113969556 4251251 complement(1413003..1414496) 1 NC_008321.1 PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO3333 transporter, putative; extracellular solute-binding protein 1414496 4251251 Shewmr4_1212 Shewanella sp. MR-4 extracellular solute-binding protein YP_733349.1 1413003 R 60480 CDS YP_733350.1 113969557 4251252 complement(1414631..1415065) 1 NC_008321.1 KEGG: son:SO3332 transcriptional regulator, CopG family; CopG family transcriptional regulator 1415065 4251252 Shewmr4_1213 Shewanella sp. MR-4 CopG family transcriptional regulator YP_733350.1 1414631 R 60480 CDS YP_733351.1 113969558 4251253 complement(1415025..1415807) 1 NC_008321.1 KEGG: son:SO3331 hypothetical protein; hypothetical protein 1415807 4251253 Shewmr4_1214 Shewanella sp. MR-4 hypothetical protein YP_733351.1 1415025 R 60480 CDS YP_733352.1 113969559 4251254 1416339..1416797 1 NC_008321.1 KEGG: son:SO3328 acetyltransferase, GNAT family; acetyltransferase 1416797 4251254 Shewmr4_1215 Shewanella sp. MR-4 acetyltransferase YP_733352.1 1416339 D 60480 CDS YP_733353.1 113969560 4251255 1417033..1417242 1 NC_008321.1 KEGG: son:SO3326 hypothetical protein; hypothetical protein 1417242 4251255 Shewmr4_1216 Shewanella sp. MR-4 hypothetical protein YP_733353.1 1417033 D 60480 CDS YP_733354.1 113969561 4251256 1417379..1417681 1 NC_008321.1 KEGG: son:SO3325 NrfJ-related protein; NrfJ-like protein 1417681 4251256 Shewmr4_1217 Shewanella sp. MR-4 NrfJ-like protein YP_733354.1 1417379 D 60480 CDS YP_733355.1 113969562 4251257 1417849..1418370 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3324 acetyltransferase, GNAT family; acetyltransferase 1418370 4251257 Shewmr4_1218 Shewanella sp. MR-4 acetyltransferase YP_733355.1 1417849 D 60480 CDS YP_733356.1 113969563 4251258 1418434..1418964 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3323 acetyltransferase, GNAT family; acetyltransferase 1418964 4251258 Shewmr4_1219 Shewanella sp. MR-4 acetyltransferase YP_733356.1 1418434 D 60480 CDS YP_733357.1 113969564 4251259 complement(1419062..1419757) 1 NC_008321.1 PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: vpa:VPA0042 hypothetical protein; pirin domain-containing protein 1419757 4251259 Shewmr4_1220 Shewanella sp. MR-4 pirin domain-containing protein YP_733357.1 1419062 R 60480 CDS YP_733358.1 113969565 4251260 complement(1419768..1420211) 1 NC_008321.1 PFAM: DoxX family protein; KEGG: son:SO3319 hypothetical protein; DoxX family protein 1420211 4251260 Shewmr4_1221 Shewanella sp. MR-4 DoxX family protein YP_733358.1 1419768 R 60480 CDS YP_733359.1 113969566 4251261 1420376..1421269 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3318 transcriptional regulator, LysR family; LysR family transcriptional regulator 1421269 4251261 Shewmr4_1222 Shewanella sp. MR-4 LysR family transcriptional regulator YP_733359.1 1420376 D 60480 CDS YP_733360.1 113969567 4251262 complement(1421666..1423417) 1 NC_008321.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: son:SO3317 5'-nucleotidase, putative; metallophosphoesterase 1423417 4251262 Shewmr4_1223 Shewanella sp. MR-4 metallophosphoesterase YP_733360.1 1421666 R 60480 CDS YP_733361.1 113969568 4251263 complement(1423515..1424606) 1 NC_008321.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: son:SO3316 hypothetical protein; hypothetical protein 1424606 4251263 Shewmr4_1224 Shewanella sp. MR-4 hypothetical protein YP_733361.1 1423515 R 60480 CDS YP_733362.1 113969569 4251264 1424751..1425872 1 NC_008321.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1425872 4251264 Shewmr4_1225 Shewanella sp. MR-4 ribosomal RNA large subunit methyltransferase N YP_733362.1 1424751 D 60480 CDS YP_733363.1 113969570 4251265 1425905..1426693 1 NC_008321.1 KEGG: son:SO3314 fimbrial biogenesis and twitching motility protein, putative; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1426693 4251265 Shewmr4_1226 Shewanella sp. MR-4 type IV pilus biogenesis/stability protein PilW YP_733363.1 1425905 D 60480 CDS YP_733364.1 113969571 4251266 1426690..1427832 1 NC_008321.1 KEGG: son:SO3313 hypothetical protein; hypothetical protein 1427832 4251266 Shewmr4_1227 Shewanella sp. MR-4 hypothetical protein YP_733364.1 1426690 D 60480 CDS YP_733365.1 113969572 4251284 1427875..1428990 1 NC_008321.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1428990 ispG 4251284 ispG Shewanella sp. MR-4 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_733365.1 1427875 D 60480 CDS YP_733366.1 113969573 4251285 1429150..1430427 1 NC_008321.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1430427 hisS 4251285 hisS Shewanella sp. MR-4 histidyl-tRNA synthetase YP_733366.1 1429150 D 60480 CDS YP_733367.1 113969574 4251286 1430440..1431060 1 NC_008321.1 KEGG: son:SO3310 hypothetical protein; hypothetical protein 1431060 4251286 Shewmr4_1230 Shewanella sp. MR-4 hypothetical protein YP_733367.1 1430440 D 60480 CDS YP_733368.1 113969575 4251287 1431072..1432259 1 NC_008321.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1432259 4251287 Shewmr4_1231 Shewanella sp. MR-4 outer membrane protein assembly complex subunit YfgL YP_733368.1 1431072 D 60480 CDS YP_733369.1 113969576 4251288 1432339..1433805 1 NC_008321.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1433805 engA 4251288 engA Shewanella sp. MR-4 GTP-binding protein EngA YP_733369.1 1432339 D 60480 CDS YP_733370.1 113969577 4251289 complement(1433953..1435299) 1 NC_008321.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1435299 xseA 4251289 xseA Shewanella sp. MR-4 exodeoxyribonuclease VII large subunit YP_733370.1 1433953 R 60480 CDS YP_733371.1 113969578 4251290 1435422..1436888 1 NC_008321.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1436888 4251290 Shewmr4_1234 Shewanella sp. MR-4 inosine 5'-monophosphate dehydrogenase YP_733371.1 1435422 D 60480 CDS YP_733372.1 113969579 4251291 1437006..1438583 1 NC_008321.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1438583 guaA 4251291 guaA Shewanella sp. MR-4 GMP synthase YP_733372.1 1437006 D 60480 CDS YP_733373.1 113969580 4251292 1438690..1439448 1 NC_008321.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: son:SO3291 cytidine/deoxycytidylate deaminase family protein; CMP/dCMP deaminase, zinc-binding 1439448 4251292 Shewmr4_1236 Shewanella sp. MR-4 CMP/dCMP deaminase, zinc-binding YP_733373.1 1438690 D 60480 CDS YP_733374.1 113969581 4251293 complement(1439888..1441324) 1 NC_008321.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 1441324 4251293 Shewmr4_1237 Shewanella sp. MR-4 putative transglycosylase YP_733374.1 1439888 R 60480 CDS YP_733375.1 113969582 4251294 1441604..1445485 1 NC_008321.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1445485 4251294 Shewmr4_1238 Shewanella sp. MR-4 phosphoribosylformylglycinamidine synthase YP_733375.1 1441604 D 60480 CDS YP_733376.1 113969583 4251295 1446727..1448283 1 NC_008321.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: son:SO3286 cytochrome bd-I oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I 1448283 4251295 Shewmr4_1239 Shewanella sp. MR-4 cytochrome bd ubiquinol oxidase subunit I YP_733376.1 1446727 D 60480 CDS YP_733377.1 113969584 4251296 1448299..1449438 1 NC_008321.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: son:SO3285 cytochrome bd-I oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 1449438 4251296 Shewmr4_1240 Shewanella sp. MR-4 cytochrome d ubiquinol oxidase subunit II YP_733377.1 1448299 D 60480 CDS YP_733378.1 113969585 4251297 1449457..1449573 1 NC_008321.1 TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: sdn:Sden_1276 Cyd operon protein YbgT; cyd operon protein YbgT 1449573 4251297 Shewmr4_1241 Shewanella sp. MR-4 cyd operon protein YbgT YP_733378.1 1449457 D 60480 CDS YP_733379.1 113969586 4251298 complement(1449813..1449965) 1 NC_008321.1 KEGG: bpm:BURPS1710b_2605 serine/arginine repetitive matrix 1; serine/arginine repetitive matrix 1 1449965 4251298 Shewmr4_1242 Shewanella sp. MR-4 serine/arginine repetitive matrix 1 YP_733379.1 1449813 R 60480 CDS YP_733380.1 113969587 4251299 complement(1450124..1452127) 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3282 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1452127 4251299 Shewmr4_1243 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_733380.1 1450124 R 60480 CDS YP_733381.1 113969588 4251300 1452385..1452630 1 NC_008321.1 PFAM: protein of unknown function DUF465; KEGG: son:SO3280 hypothetical protein; hypothetical protein 1452630 4251300 Shewmr4_1244 Shewanella sp. MR-4 hypothetical protein YP_733381.1 1452385 D 60480 CDS YP_733382.1 113969589 4251301 complement(1452615..1455695) 1 NC_008321.1 PFAM: acriflavin resistance protein; KEGG: son:SO3279 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 1455695 4251301 Shewmr4_1245 Shewanella sp. MR-4 acriflavin resistance protein YP_733382.1 1452615 R 60480 CDS YP_733383.1 113969590 4251302 complement(1455698..1456819) 1 NC_008321.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3278 hypothetical protein; RND family efflux transporter MFP subunit 1456819 4251302 Shewmr4_1246 Shewanella sp. MR-4 RND family efflux transporter MFP subunit YP_733383.1 1455698 R 60480 CDS YP_733384.1 113969591 4251303 1456956..1457576 1 NC_008321.1 PFAM: regulatory protein, TetR; KEGG: son:SO3277 transcriptional regulator, TetR family; TetR family transcriptional regulator 1457576 4251303 Shewmr4_1247 Shewanella sp. MR-4 TetR family transcriptional regulator YP_733384.1 1456956 D 60480 CDS YP_733385.1 113969592 4251304 1457690..1458631 1 NC_008321.1 KEGG: son:SO3276 hypothetical protein; hypothetical protein 1458631 4251304 Shewmr4_1248 Shewanella sp. MR-4 hypothetical protein YP_733385.1 1457690 D 60480 CDS YP_733386.1 113969593 4251305 complement(1458632..1459192) 1 NC_008321.1 KEGG: son:SO3275 hypothetical protein; hypothetical protein 1459192 4251305 Shewmr4_1249 Shewanella sp. MR-4 hypothetical protein YP_733386.1 1458632 R 60480 CDS YP_733387.1 113969594 4251306 complement(1459427..1459906) 1 NC_008321.1 KEGG: son:SO3274 hypothetical protein; hypothetical protein 1459906 4251306 Shewmr4_1250 Shewanella sp. MR-4 hypothetical protein YP_733387.1 1459427 R 60480 CDS YP_733388.1 113969595 4251307 complement(1460159..1461325) 1 NC_008321.1 KEGG: son:SO3258 hypothetical protein; hypothetical protein 1461325 4251307 Shewmr4_1251 Shewanella sp. MR-4 hypothetical protein YP_733388.1 1460159 R 60480 CDS YP_733389.1 113969596 4251308 1461565..1462197 1 NC_008321.1 KEGG: son:SO3257 hypothetical protein; hypothetical protein 1462197 4251308 Shewmr4_1252 Shewanella sp. MR-4 hypothetical protein YP_733389.1 1461565 D 60480 CDS YP_733390.1 113969597 4251309 1462194..1462643 1 NC_008321.1 PFAM: protein of unknown function DUF400; KEGG: son:SO3256 hypothetical protein; hypothetical protein 1462643 4251309 Shewmr4_1253 Shewanella sp. MR-4 hypothetical protein YP_733390.1 1462194 D 60480 CDS YP_733391.1 113969598 4251310 complement(1462765..1463190) 1 NC_008321.1 PFAM: FlgN family protein; KEGG: son:SO3255 flagellar biosynthetic protein FlgN; FlgN family protein 1463190 4251310 Shewmr4_1254 Shewanella sp. MR-4 FlgN family protein YP_733391.1 1462765 R 60480 CDS YP_733392.1 113969599 4251311 complement(1463193..1463519) 1 NC_008321.1 PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: son:SO3254 negative regulator of flagellin synthesis FlgM; anti-sigma-28 factor, FlgM 1463519 4251311 Shewmr4_1255 Shewanella sp. MR-4 anti-sigma-28 factor, FlgM YP_733392.1 1463193 R 60480 CDS YP_733393.1 113969600 4251312 complement(1463595..1464302) 1 NC_008321.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1464302 flgA 4251312 flgA Shewanella sp. MR-4 flagellar basal body P-ring biosynthesis protein FlgA YP_733393.1 1463595 R 60480 CDS YP_733394.1 113969601 4251313 1464508..1465428 1 NC_008321.1 PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO3252 chemotaxis protein CheV; response regulator receiver modulated CheW protein 1465428 4251313 Shewmr4_1257 Shewanella sp. MR-4 response regulator receiver modulated CheW protein YP_733394.1 1464508 D 60480 CDS YP_733395.1 113969602 4251314 1465530..1466369 1 NC_008321.1 PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 12; KEGG: son:SO3251 chemotaxis protein methyltransferase CheR; MCP methyltransferase, CheR-type 1466369 4251314 Shewmr4_1258 Shewanella sp. MR-4 MCP methyltransferase, CheR-type YP_733395.1 1465530 D 60480 CDS YP_733396.1 113969603 4251315 1466514..1466921 1 NC_008321.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 1466921 flgB 4251315 flgB Shewanella sp. MR-4 flagellar basal body rod protein FlgB YP_733396.1 1466514 D 60480 CDS YP_733397.1 113969604 4251316 1466924..1467340 1 NC_008321.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1467340 flgC 4251316 flgC Shewanella sp. MR-4 flagellar basal body rod protein FlgC YP_733397.1 1466924 D 60480 CDS YP_733398.1 113969605 4251317 1467365..1468135 1 NC_008321.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1468135 flgD 4251317 flgD Shewanella sp. MR-4 flagellar basal body rod modification protein YP_733398.1 1467365 D 60480 CDS YP_733399.1 113969606 4251318 1468198..1469559 1 NC_008321.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1469559 flgE 4251318 flgE Shewanella sp. MR-4 flagellar hook protein FlgE YP_733399.1 1468198 D 60480 CDS YP_733400.2 161349955 4251197 1469732..1470475 1 NC_008321.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1470475 flgF 4251197 flgF Shewanella sp. MR-4 flagellar basal body rod protein FlgF YP_733400.2 1469732 D 60480 CDS YP_733401.1 113969608 4251198 1470486..1471274 1 NC_008321.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1471274 flgG 4251198 flgG Shewanella sp. MR-4 flagellar basal body rod protein FlgG YP_733401.1 1470486 D 60480 CDS YP_733402.1 113969609 4251199 1471287..1471961 1 NC_008321.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 1471961 flgH 4251199 flgH Shewanella sp. MR-4 flagellar basal body L-ring protein YP_733402.1 1471287 D 60480 CDS YP_733403.1 113969610 4251200 1471973..1473064 1 NC_008321.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1473064 flgI 4251200 flgI Shewanella sp. MR-4 flagellar basal body P-ring protein YP_733403.1 1471973 D 60480 CDS YP_733404.1 113969611 4251201 1473082..1474236 1 NC_008321.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1474236 flgJ 4251201 flgJ Shewanella sp. MR-4 flagellar rod assembly protein/muramidase FlgJ YP_733404.1 1473082 D 60480 CDS YP_733405.1 113969612 4251202 1474277..1476202 1 NC_008321.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sdn:Sden_1312 flagellar hook-associated protein; flagellar hook-associated protein FlgK 1476202 4251202 Shewmr4_1268 Shewanella sp. MR-4 flagellar hook-associated protein FlgK YP_733405.1 1474277 D 60480 CDS YP_733406.1 113969613 4251203 1476214..1477422 1 NC_008321.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 1477422 flgL 4251203 flgL Shewanella sp. MR-4 flagellar hook-associated protein FlgL YP_733406.1 1476214 D 60480 CDS YP_733407.1 113969614 4251204 1477679..1479136 1 NC_008321.1 PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: pae:PA1092 flagellin type B; flagellin domain-containing protein 1479136 4251204 Shewmr4_1270 Shewanella sp. MR-4 flagellin domain-containing protein YP_733407.1 1477679 D 60480 CDS YP_733408.1 113969615 4251205 complement(1479615..1479965) 1 NC_008321.1 KEGG: ypm:YP1857 transposase; transposase 1479965 4251205 Shewmr4_1272 Shewanella sp. MR-4 transposase YP_733408.1 1479615 R 60480 CDS YP_733409.1 113969616 4251206 1480198..1481652 1 NC_008321.1 PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: pae:PA1092 flagellin type B; flagellin domain-containing protein 1481652 4251206 Shewmr4_1273 Shewanella sp. MR-4 flagellin domain-containing protein YP_733409.1 1480198 D 60480 CDS YP_733410.1 113969617 4251207 1481831..1482223 1 NC_008321.1 PFAM: flagellar protein FlaG protein; KEGG: son:SO3236 flagellin FlaG; flagellar protein FlaG protein 1482223 4251207 Shewmr4_1274 Shewanella sp. MR-4 flagellar protein FlaG protein YP_733410.1 1481831 D 60480 CDS YP_733411.1 113969618 4251208 1482264..1483631 1 NC_008321.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: son:SO3235 flagellar hook-associated protein FliD; flagellar hook-associated 2 domain-containing protein 1483631 4251208 Shewmr4_1275 Shewanella sp. MR-4 flagellar hook-associated 2 domain-containing protein YP_733411.1 1482264 D 60480 CDS YP_733412.1 113969619 4251209 1483668..1484021 1 NC_008321.1 KEGG: son:SO3234 hypothetical protein; hypothetical protein 1484021 4251209 Shewmr4_1276 Shewanella sp. MR-4 hypothetical protein YP_733412.1 1483668 D 60480 CDS YP_733413.1 113969620 4251210 1484028..1484429 1 NC_008321.1 flagellin specific chaperone; flagellar protein FliS 1484429 fliS 4251210 fliS Shewanella sp. MR-4 flagellar protein FliS YP_733413.1 1484028 D 60480 CDS YP_733414.1 113969621 4251211 1484727..1486160 1 NC_008321.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: son:SO3232 flagellar regulatory protein A; sigma-54 dependent trancsriptional regulator 1486160 4251211 Shewmr4_1278 Shewanella sp. MR-4 sigma-54 dependent trancsriptional regulator YP_733414.1 1484727 D 60480 CDS YP_733415.1 113969622 4251212 1486269..1487351 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: son:SO3231 flagellar regulatory protein B; PAS/PAC sensor signal transduction histidine kinase 1487351 4251212 Shewmr4_1279 Shewanella sp. MR-4 PAS/PAC sensor signal transduction histidine kinase YP_733415.1 1486269 D 60480 CDS YP_733416.1 113969623 4251213 1487344..1488684 1 NC_008321.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: son:SO3230 flagellar regulatory protein C; two component, sigma54 specific, Fis family transcriptional regulator 1488684 4251213 Shewmr4_1280 Shewanella sp. MR-4 two component, sigma54 specific, Fis family transcriptional regulator YP_733416.1 1487344 D 60480 CDS YP_733417.1 113969624 4251214 1488862..1489200 1 NC_008321.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: son:SO3229 flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 1489200 4251214 Shewmr4_1281 Shewanella sp. MR-4 flagellar hook-basal body complex subunit FliE YP_733417.1 1488862 D 60480 CDS YP_733418.1 113969625 4251215 1489245..1490930 1 NC_008321.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1490930 fliF 4251215 fliF Shewanella sp. MR-4 flagellar MS-ring protein YP_733418.1 1489245 D 60480 CDS YP_733419.1 113969626 4251216 1490923..1491969 1 NC_008321.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1491969 fliG 4251216 fliG Shewanella sp. MR-4 flagellar motor switch protein G YP_733419.1 1490923 D 60480 CDS YP_733420.1 113969627 4251217 1491956..1492906 1 NC_008321.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1492906 fliH 4251217 fliH Shewanella sp. MR-4 flagellar assembly protein H YP_733420.1 1491956 D 60480 CDS YP_733421.1 113969628 4251218 1492875..1494212 1 NC_008321.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1494212 fliI 4251218 fliI Shewanella sp. MR-4 flagellum-specific ATP synthase YP_733421.1 1492875 D 60480 CDS YP_733422.1 113969629 4251219 1494224..1494670 1 NC_008321.1 TIGRFAM: flagellar export protein FliJ; KEGG: son:SO3224 flagellar protein FliJ; flagellar export protein FliJ 1494670 4251219 Shewmr4_1286 Shewanella sp. MR-4 flagellar export protein FliJ YP_733422.1 1494224 D 60480 CDS YP_733423.1 113969630 4251220 1494813..1496573 1 NC_008321.1 PFAM: flagellar hook-length control protein; KEGG: son:SO3223 flagellar hook-length control protein FliK; flagellar hook-length control protein 1496573 4251220 Shewmr4_1287 Shewanella sp. MR-4 flagellar hook-length control protein YP_733423.1 1494813 D 60480 CDS YP_733424.1 113969631 4251221 1496657..1497184 1 NC_008321.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1497184 fliL 4251221 fliL Shewanella sp. MR-4 flagellar basal body-associated protein FliL YP_733424.1 1496657 D 60480 CDS YP_733425.1 113969632 4251222 1497225..1498256 1 NC_008321.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1498256 fliM 4251222 fliM Shewanella sp. MR-4 flagellar motor switch protein FliM YP_733425.1 1497225 D 60480 CDS YP_733426.1 113969633 4251223 1498269..1498643 1 NC_008321.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1498643 fliN 4251223 fliN Shewanella sp. MR-4 flagellar motor switch protein YP_733426.1 1498269 D 60480 CDS YP_733427.1 113969634 4251224 1498677..1499084 1 NC_008321.1 PFAM: flagellar biosynthesis protein, FliO; KEGG: son:SO3219 flagellar protein FliO; flagellar biosynthesis protein, FliO 1499084 4251224 Shewmr4_1291 Shewanella sp. MR-4 flagellar biosynthesis protein, FliO YP_733427.1 1498677 D 60480 CDS YP_733428.1 113969635 4251225 1499081..1499827 1 NC_008321.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1499827 fliP 4251225 fliP Shewanella sp. MR-4 flagellar biosynthesis protein FliP YP_733428.1 1499081 D 60480 CDS YP_733429.1 113969636 4251226 1499845..1500114 1 NC_008321.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: son:SO3217 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 1500114 4251226 Shewmr4_1293 Shewanella sp. MR-4 flagellar biosynthetic protein FliQ YP_733429.1 1499845 D 60480 CDS YP_733430.1 113969637 4251227 1500119..1500916 1 NC_008321.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1500916 fliR 4251227 fliR Shewanella sp. MR-4 flagellar biosynthesis protein FliR YP_733430.1 1500119 D 60480 CDS YP_733431.1 113969638 4251228 1500934..1502064 1 NC_008321.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1502064 flhB 4251228 flhB Shewanella sp. MR-4 flagellar biosynthesis protein FlhB YP_733431.1 1500934 D 60480 CDS YP_733432.1 113969639 4251229 1502183..1504282 1 NC_008321.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1504282 flhA 4251229 flhA Shewanella sp. MR-4 flagellar biosynthesis protein FlhA YP_733432.1 1502183 D 60480 CDS YP_733433.1 113969640 4251230 1504294..1505670 1 NC_008321.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1505670 flhF 4251230 flhF Shewanella sp. MR-4 flagellar biosynthesis regulator FlhF YP_733433.1 1504294 D 60480 CDS YP_733434.1 113969641 4251231 1505675..1506556 1 NC_008321.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3211 flagellar biosynthetic protein FlhG; cobyrinic acid a,c-diamide synthase 1506556 4251231 Shewmr4_1298 Shewanella sp. MR-4 cobyrinic acid a,c-diamide synthase YP_733434.1 1505675 D 60480 CDS YP_733435.1 113969642 4251319 1506549..1507262 1 NC_008321.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1507262 fliA 4251319 fliA Shewanella sp. MR-4 flagellar biosynthesis sigma factor YP_733435.1 1506549 D 60480 CDS YP_733436.1 113969643 4251320 1507310..1507693 1 NC_008321.1 PFAM: response regulator receiver; KEGG: son:SO3209 chemotaxis protein CheY; response regulator receiver protein 1507693 4251320 Shewmr4_1300 Shewanella sp. MR-4 response regulator receiver protein YP_733436.1 1507310 D 60480 CDS YP_733437.1 113969644 4251321 1507707..1508444 1 NC_008321.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: son:SO3208 chemotaxis protein CheZ; chemotaxis phosphatase, CheZ 1508444 4251321 Shewmr4_1301 Shewanella sp. MR-4 chemotaxis phosphatase, CheZ YP_733437.1 1507707 D 60480 CDS YP_733438.1 113969645 4251322 1508460..1510742 1 NC_008321.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: son:SO3207 chemotaxis protein; CheA signal transduction histidine kinases 1510742 4251322 Shewmr4_1302 Shewanella sp. MR-4 CheA signal transduction histidine kinases YP_733438.1 1508460 D 60480 CDS YP_733439.1 113969646 4251323 1510761..1511879 1 NC_008321.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1511879 4251323 Shewmr4_1303 Shewanella sp. MR-4 chemotaxis-specific methylesterase YP_733439.1 1510761 D 60480 CDS YP_733440.1 113969647 4251324 1511905..1512405 1 NC_008321.1 KEGG: son:SO3205 hypothetical protein; hypothetical protein 1512405 4251324 Shewmr4_1304 Shewanella sp. MR-4 hypothetical protein YP_733440.1 1511905 D 60480 CDS YP_733441.1 113969648 4251325 1512468..1513259 1 NC_008321.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3204 ParA family protein; cobyrinic acid a,c-diamide synthase 1513259 4251325 Shewmr4_1305 Shewanella sp. MR-4 cobyrinic acid a,c-diamide synthase YP_733441.1 1512468 D 60480 CDS YP_733442.1 113969649 4251326 1513243..1514250 1 NC_008321.1 PFAM: CheW domain protein; KEGG: son:SO3203 CheW domain protein; CheW protein 1514250 4251326 Shewmr4_1306 Shewanella sp. MR-4 CheW protein YP_733442.1 1513243 D 60480 CDS YP_733443.1 113969650 4251327 1514258..1514752 1 NC_008321.1 PFAM: CheW domain protein; KEGG: son:SO3202 purine-binding chemotaxis protein CheW; CheW protein 1514752 4251327 Shewmr4_1307 Shewanella sp. MR-4 CheW protein YP_733443.1 1514258 D 60480 CDS YP_733444.1 113969651 4251328 1514907..1515305 1 NC_008321.1 KEGG: son:SO3200 hypothetical protein; hypothetical protein 1515305 4251328 Shewmr4_1308 Shewanella sp. MR-4 hypothetical protein YP_733444.1 1514907 D 60480 CDS YP_733445.1 113969652 4251329 complement(1515333..1515644) 1 NC_008321.1 KEGG: son:SO3199 FlhB domain protein; FlhB domain-containing protein 1515644 4251329 Shewmr4_1309 Shewanella sp. MR-4 FlhB domain-containing protein YP_733445.1 1515333 R 60480 CDS YP_733446.1 113969653 4251330 complement(1515657..1517672) 1 NC_008321.1 KEGG: son:SO3198 hypothetical protein; hypothetical protein 1517672 4251330 Shewmr4_1310 Shewanella sp. MR-4 hypothetical protein YP_733446.1 1515657 R 60480 CDS YP_733447.1 113969654 4251331 1517894..1518679 1 NC_008321.1 PFAM: VacJ family lipoprotein; KEGG: son:SO3197 vacJ lipoprotein, putative; VacJ family lipoprotein 1518679 4251331 Shewmr4_1311 Shewanella sp. MR-4 VacJ family lipoprotein YP_733447.1 1517894 D 60480 CDS YP_733448.1 113969655 4251332 1518801..1519904 1 NC_008321.1 PFAM: response regulator receiver; KEGG: son:SO3196 response regulator; response regulator receiver protein 1519904 4251332 Shewmr4_1312 Shewanella sp. MR-4 response regulator receiver protein YP_733448.1 1518801 D 60480 CDS YP_733449.1 113969656 4251333 complement(1520089..1521558) 1 NC_008321.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: sdn:Sden_1357 amino acid/peptide transporter; amino acid/peptide transporter 1521558 4251333 Shewmr4_1313 Shewanella sp. MR-4 amino acid/peptide transporter YP_733449.1 1520089 R 60480 CDS YP_733450.1 113969657 4251334 1522031..1522531 1 NC_008321.1 KEGG: son:SO3194 transcriptional activator rfaH, putative; TIGRFAM: transcriptional activator RfaH; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; transcription antitermination protein nusG 1522531 4251334 Shewmr4_1314 Shewanella sp. MR-4 transcription antitermination protein nusG YP_733450.1 1522031 D 60480 CDS YP_733451.1 113969658 4251335 1523323..1525836 1 NC_008321.1 PFAM: polysaccharide export protein; KEGG: son:SO3193 polysaccharide biosynthesis protein; polysaccharide export protein 1525836 4251335 Shewmr4_1315 Shewanella sp. MR-4 polysaccharide export protein YP_733451.1 1523323 D 60480 CDS YP_733452.1 113969659 4251336 1525977..1526330 1 NC_008321.1 crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein 1526330 4251336 Shewmr4_1316 Shewanella sp. MR-4 hypothetical protein YP_733452.1 1525977 D 60480 CDS YP_733453.1 113969660 4251337 1526532..1527518 1 NC_008321.1 PFAM: lipopolysaccharide biosynthesis; KEGG: son:SO3191 chain length determinant protein; lipopolysaccharide biosynthesis 1527518 4251337 Shewmr4_1317 Shewanella sp. MR-4 lipopolysaccharide biosynthesis YP_733453.1 1526532 D 60480 CDS YP_733454.1 113969661 4251338 1527742..1528821 1 NC_008321.1 NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose 4,6 dehydratase 1528821 4251338 Shewmr4_1318 Shewanella sp. MR-4 dTDP-glucose 4,6 dehydratase YP_733454.1 1527742 D 60480 CDS YP_733455.1 113969662 4251339 1528892..1529767 1 NC_008321.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: son:SO3186 glucose-1-phosphate-thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1529767 4251339 Shewmr4_1319 Shewanella sp. MR-4 glucose-1-phosphate thymidylyltransferase YP_733455.1 1528892 D 60480 CDS YP_733456.1 113969663 4251340 1529773..1531200 1 NC_008321.1 PFAM: polysaccharide biosynthesis protein; KEGG: bth:BT1717 putative lipopolysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1531200 4251340 Shewmr4_1320 Shewanella sp. MR-4 polysaccharide biosynthesis protein YP_733456.1 1529773 D 60480 CDS YP_733457.1 113969664 4251341 1531231..1532340 1 NC_008321.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rme:Rmet_5236 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1532340 4251341 Shewmr4_1321 Shewanella sp. MR-4 DegT/DnrJ/EryC1/StrS aminotransferase YP_733457.1 1531231 D 60480 CDS YP_733458.1 113969665 4251342 1532345..1532920 1 NC_008321.1 KEGG: vch:VC0252 acetyltransferase RfbO, CysE/LacA/LpxA/NodL family; acetyltransferase 1532920 4251342 Shewmr4_1322 Shewanella sp. MR-4 acetyltransferase YP_733458.1 1532345 D 60480 CDS YP_733459.1 113969666 4251343 1532914..1534098 1 NC_008321.1 KEGG: gsu:GSU3022 hypothetical protein; hypothetical protein 1534098 4251343 Shewmr4_1323 Shewanella sp. MR-4 hypothetical protein YP_733459.1 1532914 D 60480 CDS YP_733460.1 113969667 4251344 1534733..1535761 1 NC_008321.1 KEGG: bld:BLi03688 YveQ; hypothetical protein 1535761 4251344 Shewmr4_1324 Shewanella sp. MR-4 hypothetical protein YP_733460.1 1534733 D 60480 CDS YP_733461.1 113969668 4251345 1535803..1536570 1 NC_008321.1 PFAM: glycosyl transferase, family 2; KEGG: oih:OB2925 teichuronic acid biosynthesis; glycosyl transferase family protein 1536570 4251345 Shewmr4_1325 Shewanella sp. MR-4 glycosyl transferase family protein YP_733461.1 1535803 D 60480 CDS YP_733462.1 113969669 4251346 1536574..1537668 1 NC_008321.1 KEGG: mst:Msp_0055 predicted glycosyltransferase; hypothetical protein 1537668 4251346 Shewmr4_1326 Shewanella sp. MR-4 hypothetical protein YP_733462.1 1536574 D 60480 CDS YP_733463.1 113969670 4251347 1537665..1538675 1 NC_008321.1 PFAM: glycosyl transferase, group 1; KEGG: rsp:RSP_4207 glycosyl transferase, group 1; glycosyl transferase, group 1 1538675 4251347 Shewmr4_1327 Shewanella sp. MR-4 glycosyl transferase, group 1 YP_733463.1 1537665 D 60480 CDS YP_733464.1 113969671 4251348 1538822..1540240 1 NC_008321.1 KEGG: vvy:VV0352 mannose-1-phosphate guanylyltransferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase (GDP) 1540240 4251348 Shewmr4_1328 Shewanella sp. MR-4 mannose-1-phosphate guanylyltransferase (GDP) YP_733464.1 1538822 D 60480 CDS YP_733465.1 113969672 4251349 1540244..1541662 1 NC_008321.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: stt:t0790 phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/subunit 1541662 4251349 Shewmr4_1329 Shewanella sp. MR-4 phosphoglucomutase/phosphomannomutase alpha/beta/subunit YP_733465.1 1540244 D 60480 CDS YP_733466.1 113969673 4251350 1541694..1542860 1 NC_008321.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: vpa:VP0236 nucleotide sugar dehydrogenase; UDP-glucose 6-dehydrogenase 1542860 4251350 Shewmr4_1330 Shewanella sp. MR-4 UDP-glucose 6-dehydrogenase YP_733466.1 1541694 D 60480 CDS YP_733467.1 113969674 4251351 1543063..1544136 1 NC_008321.1 TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: ppr:PBPRA2673 hypothetical undecaprenylphosphateN-acetylglucosamine 1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 1544136 4251351 Shewmr4_1331 Shewanella sp. MR-4 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_733467.1 1543063 D 60480 CDS YP_733468.1 113969675 4251352 1544281..1545342 1 NC_008321.1 TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: cps:CPS_2091 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 1545342 4251352 Shewmr4_1332 Shewanella sp. MR-4 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_733468.1 1544281 D 60480 CDS YP_733469.1 113969676 4251353 1545415..1546767 1 NC_008321.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: hit:NTHI1664 predicted phosphomannomutase; phosphoglucosamine mutase 1546767 4251353 Shewmr4_1333 Shewanella sp. MR-4 phosphoglucosamine mutase YP_733469.1 1545415 D 60480 CDS YP_733470.1 113969677 4251354 complement(1548249..1548899) 1 NC_008321.1 PFAM: protein of unknown function DUF886; KEGG: son:SO3164 hypothetical protein; hypothetical protein 1548899 4251354 Shewmr4_1335 Shewanella sp. MR-4 hypothetical protein YP_733470.1 1548249 R 60480 CDS YP_733471.1 113969678 4251355 complement(1548990..1549502) 1 NC_008321.1 PFAM: copper resistance lipoprotein NlpE; KEGG: son:SO3163 lipoprotein; copper resistance lipoprotein NlpE 1549502 4251355 Shewmr4_1336 Shewanella sp. MR-4 copper resistance lipoprotein NlpE YP_733471.1 1548990 R 60480 CDS YP_733472.1 113969679 4251356 1549812..1551173 1 NC_008321.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3162 sensor histidine kinase; GAF sensor signal transduction histidine kinase 1551173 4251356 Shewmr4_1337 Shewanella sp. MR-4 GAF sensor signal transduction histidine kinase YP_733472.1 1549812 D 60480 CDS YP_733473.1 113969680 4251357 1551247..1552185 1 NC_008321.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: eba:ebA2277 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1552185 4251357 Shewmr4_1338 Shewanella sp. MR-4 glucose-1-phosphate thymidylyltransferase YP_733473.1 1551247 D 60480 CDS YP_733474.1 113969681 4251358 1552172..1552714 1 NC_008321.1 KEGG: son:SO3160 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1552714 4251358 Shewmr4_1339 Shewanella sp. MR-4 dTDP-4-dehydrorhamnose 3,5-epimerase YP_733474.1 1552172 D 60480 CDS YP_733475.1 113969682 4251359 complement(1552740..1555103) 1 NC_008321.1 PFAM: protein of unknown function DUF940, membrane lipoprotein putative; KEGG: son:SO3159 hypothetical protein; hypothetical protein 1555103 4251359 Shewmr4_1340 Shewanella sp. MR-4 hypothetical protein YP_733475.1 1552740 R 60480 CDS YP_733476.1 113969683 4251360 complement(1555103..1555888) 1 NC_008321.1 PFAM: protein of unknown function DUF1017; KEGG: son:SO3158 polysaccharide synthesis-related protein; hypothetical protein 1555888 4251360 Shewmr4_1341 Shewanella sp. MR-4 hypothetical protein YP_733476.1 1555103 R 60480 CDS YP_733477.1 113969684 4251361 complement(1555899..1556609) 1 NC_008321.1 KEGG: son:SO3157 lipoprotein, putative; putative lipoprotein 1556609 4251361 Shewmr4_1342 Shewanella sp. MR-4 putative lipoprotein YP_733477.1 1555899 R 60480 CDS YP_733478.1 113969685 4251362 complement(1556761..1557003) 1 NC_008321.1 KEGG: son:SO3156.1 hypothetical protein; hypothetical protein 1557003 4251362 Shewmr4_1343 Shewanella sp. MR-4 hypothetical protein YP_733478.1 1556761 R 60480 CDS YP_733479.1 113969686 4251363 complement(1557276..1558400) 1 NC_008321.1 PFAM: Patatin; KEGG: son:SO3155 hypothetical protein; patatin 1558400 4251363 Shewmr4_1344 Shewanella sp. MR-4 patatin YP_733479.1 1557276 R 60480 CDS YP_733480.1 113969687 4251364 complement(1558666..1560378) 1 NC_008321.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1560378 4251364 Shewmr4_1345 Shewanella sp. MR-4 prolyl-tRNA synthetase YP_733480.1 1558666 R 60480 CDS YP_733481.1 113969688 4251365 complement(1560549..1561178) 1 NC_008321.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO3152 acetyltransferase, CysE/LacA/LpxA/NodL family; hexapaptide repeat-containing transferase 1561178 4251365 Shewmr4_1346 Shewanella sp. MR-4 hexapaptide repeat-containing transferase YP_733481.1 1560549 R 60480 CDS YP_733482.1 113969689 4251366 complement(1561179..1561913) 1 NC_008321.1 PFAM: protein of unknown function UPF0066; KEGG: son:SO3151 hypothetical protein; hypothetical protein 1561913 4251366 Shewmr4_1347 Shewanella sp. MR-4 hypothetical protein YP_733482.1 1561179 R 60480 CDS YP_733483.1 113969690 4251367 complement(1562008..1562388) 1 NC_008321.1 KEGG: son:SO3150 lipoprotein, putative; putative lipoprotein 1562388 4251367 Shewmr4_1348 Shewanella sp. MR-4 putative lipoprotein YP_733483.1 1562008 R 60480 CDS YP_733484.1 113969691 4251368 complement(1562466..1563755) 1 NC_008321.1 KEGG: son:SO3149 hypothetical protein; hypothetical protein 1563755 4251368 Shewmr4_1349 Shewanella sp. MR-4 hypothetical protein YP_733484.1 1562466 R 60480 CDS YP_733485.1 113969692 4251369 complement(1563755..1566829) 1 NC_008321.1 PFAM: amidohydrolase; KEGG: ilo:IL1717 secreted enzyme, contains two amidohydrolase related domains; amidohydrolase 1566829 4251369 Shewmr4_1350 Shewanella sp. MR-4 amidohydrolase YP_733485.1 1563755 R 60480 CDS YP_733486.1 113969693 4251370 complement(1567031..1567423) 1 NC_008321.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: son:SO3146 DNA-binding protein, H-NS family; histone family protein nucleoid-structuring protein H-NS 1567423 4251370 Shewmr4_1351 Shewanella sp. MR-4 histone family protein nucleoid-structuring protein H-NS YP_733486.1 1567031 R 60480 CDS YP_733487.1 113969694 4251371 1567733..1568482 1 NC_008321.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: son:SO3145 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein beta-subunit 1568482 4251371 Shewmr4_1352 Shewanella sp. MR-4 electron transfer flavoprotein beta-subunit YP_733487.1 1567733 D 60480 CDS YP_733488.1 113969695 4251372 1568483..1569409 1 NC_008321.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: son:SO3144 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 1569409 4251372 Shewmr4_1353 Shewanella sp. MR-4 electron transfer flavoprotein subunit alpha YP_733488.1 1568483 D 60480 CDS YP_733489.1 113969696 4251373 1569781..1571349 1 NC_008321.1 PFAM: Na+/H+ antiporter NhaC; KEGG: sdn:Sden_2537 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 1571349 4251373 Shewmr4_1354 Shewanella sp. MR-4 Na+/H+ antiporter NhaC YP_733489.1 1569781 D 60480 CDS YP_733490.1 113969697 4251374 complement(1571467..1573617) 1 NC_008321.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO3142 peptidyl-dipeptidase Dcp; peptidyl-dipeptidase Dcp 1573617 4251374 Shewmr4_1355 Shewanella sp. MR-4 peptidyl-dipeptidase Dcp YP_733490.1 1571467 R 60480 CDS YP_733491.1 113969698 4251375 complement(1573788..1575878) 1 NC_008321.1 KEGG: son:SO3140.2 hypothetical protein; hypothetical protein 1575878 4251375 Shewmr4_1356 Shewanella sp. MR-4 hypothetical protein YP_733491.1 1573788 R 60480 CDS YP_733492.1 113969699 4251376 1576417..1576995 1 NC_008321.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1576995 4251376 Shewmr4_1357 Shewanella sp. MR-4 thymidine kinase YP_733492.1 1576417 D 60480 CDS YP_733493.1 113969700 4251377 1577283..1580354 1 NC_008321.1 KEGG: sdn:Sden_3098 hypothetical protein; hypothetical protein 1580354 4251377 Shewmr4_1358 Shewanella sp. MR-4 hypothetical protein YP_733493.1 1577283 D 60480 CDS YP_733494.1 113969701 4251378 complement(1580499..1581878) 1 NC_008321.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3138 C4-dicarboxylate transport transcriptional regulatory protein; two component, sigma54 specific, Fis family transcriptional regulator 1581878 4251378 Shewmr4_1359 Shewanella sp. MR-4 two component, sigma54 specific, Fis family transcriptional regulator YP_733494.1 1580499 R 60480 CDS YP_733495.1 113969702 4251379 complement(1581875..1583686) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3136.1 hypothetical two-component sensor histidine kinase protein; periplasmic sensor signal transduction histidine kinase 1583686 4251379 Shewmr4_1360 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_733495.1 1581875 R 60480 CDS YP_733496.1 113969703 4251380 complement(1583786..1585183) 1 NC_008321.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO3136 C4-dicarboxylate transport protein; TRAP dicarboxylate transporter, DctM subunit 1585183 4251380 Shewmr4_1361 Shewanella sp. MR-4 TRAP dicarboxylate transporter, DctM subunit YP_733496.1 1583786 R 60480 CDS YP_733497.1 113969704 4251381 complement(1585183..1585827) 1 NC_008321.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: son:SO3135 C4-dicarboxylate transporter, putative; tripartite ATP-independent periplasmic transporter DctQ 1585827 4251381 Shewmr4_1362 Shewanella sp. MR-4 tripartite ATP-independent periplasmic transporter DctQ YP_733497.1 1585183 R 60480 CDS YP_733498.1 113969705 4251382 complement(1585890..1586912) 1 NC_008321.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: son:SO3134 C4-dicarboxylate-binding periplasmic protein; TRAP dicarboxylate transporter, DctP subunit 1586912 4251382 Shewmr4_1363 Shewanella sp. MR-4 TRAP dicarboxylate transporter, DctP subunit YP_733498.1 1585890 R 60480 CDS YP_733499.1 113969706 4251383 complement(1587307..1587537) 1 NC_008321.1 KEGG: son:SO3132 hypothetical protein; hypothetical protein 1587537 4251383 Shewmr4_1364 Shewanella sp. MR-4 hypothetical protein YP_733499.1 1587307 R 60480 CDS YP_733500.1 113969707 4251384 1588908..1590317 1 NC_008321.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1590317 gltX 4251384 gltX Shewanella sp. MR-4 glutamyl-tRNA synthetase YP_733500.1 1588908 D 60480 CDS YP_733501.1 113969708 4251385 complement(1592640..1594469) 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3128 ABC transporter, ATP-binding/permease protein, putative; ABC transporter-like protein 1594469 4251385 Shewmr4_1366 Shewanella sp. MR-4 ABC transporter-like protein YP_733501.1 1592640 R 60480 CDS YP_733502.1 113969709 4251386 1594653..1596281 1 NC_008321.1 PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: son:SO3127 Ada regulatory protein, putative; transcriptional regulator Ada / DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase 1596281 4251386 Shewmr4_1367 Shewanella sp. MR-4 transcriptional regulator Ada / DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase YP_733502.1 1594653 D 60480 CDS YP_733503.1 113969710 4251387 1596415..1596981 1 NC_008321.1 KEGG: son:SO3126 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 1596981 4251387 Shewmr4_1368 Shewanella sp. MR-4 methylated-DNA--protein-cysteine methyltransferase YP_733503.1 1596415 D 60480 CDS YP_733504.1 113969711 4251388 1597019..1598302 1 NC_008321.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO3125 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase domain-containing protein 1598302 4251388 Shewmr4_1369 Shewanella sp. MR-4 DEAD/DEAH box helicase domain-containing protein YP_733504.1 1597019 D 60480 CDS YP_733505.1 113969712 4251389 1598368..1598838 1 NC_008321.1 PFAM: Dual specificity protein phosphatase; KEGG: son:SO3124 tyrosine-specific protein phosphatase, putative; dual specificity protein phosphatase 1598838 4251389 Shewmr4_1370 Shewanella sp. MR-4 dual specificity protein phosphatase YP_733505.1 1598368 D 60480 CDS YP_733506.1 113969713 4251390 1598874..1600496 1 NC_008321.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: vvy:VV1159 hypothetical protein; phospholipase D/transphosphatidylase 1600496 4251390 Shewmr4_1371 Shewanella sp. MR-4 phospholipase D/transphosphatidylase YP_733506.1 1598874 D 60480 CDS YP_733507.1 113969714 4251391 1600588..1601487 1 NC_008321.1 PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO3123 chemotaxis protein CheV; response regulator receiver modulated CheW protein 1601487 4251391 Shewmr4_1372 Shewanella sp. MR-4 response regulator receiver modulated CheW protein YP_733507.1 1600588 D 60480 CDS YP_733508.1 113969715 4251392 1601658..1602884 1 NC_008321.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 1602884 4251392 Shewmr4_1373 Shewanella sp. MR-4 serine/threonine transporter SstT YP_733508.1 1601658 D 60480 CDS YP_733509.1 113969716 4251393 1602961..1603485 1 NC_008321.1 KEGG: son:SO3121 hypothetical protein; hypothetical protein 1603485 4251393 Shewmr4_1374 Shewanella sp. MR-4 hypothetical protein YP_733509.1 1602961 D 60480 CDS YP_733510.1 113969717 4251394 complement(1603538..1604917) 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase domain protein; KEGG: son:SO3120 oxidoreductase, Gfo/Idh/MocA family; twin-arginine translocation pathway signal 1604917 4251394 Shewmr4_1375 Shewanella sp. MR-4 twin-arginine translocation pathway signal YP_733510.1 1603538 R 60480 CDS YP_733511.1 113969718 4251395 1605253..1605687 1 NC_008321.1 KEGG: son:SO3119 hypothetical protein; hypothetical protein 1605687 4251395 Shewmr4_1376 Shewanella sp. MR-4 hypothetical protein YP_733511.1 1605253 D 60480 CDS YP_733512.1 113969719 4251396 complement(1605823..1606494) 1 NC_008321.1 PFAM: pseudouridine synthase; KEGG: sdn:Sden_2524 pseudouridylate synthase; pseudouridylate synthase 1606494 4251396 Shewmr4_1377 Shewanella sp. MR-4 pseudouridylate synthase YP_733512.1 1605823 R 60480 CDS YP_733513.1 113969720 4251397 complement(1606590..1607144) 1 NC_008321.1 PFAM: Redoxin domain protein; KEGG: son:SO3117 thioredoxin, putative; redoxin domain-containing protein 1607144 4251397 Shewmr4_1378 Shewanella sp. MR-4 redoxin domain-containing protein YP_733513.1 1606590 R 60480 CDS YP_733514.1 113969721 4251398 complement(1607249..1607875) 1 NC_008321.1 KEGG: son:SO3116 hypothetical protein; hypothetical protein 1607875 4251398 Shewmr4_1379 Shewanella sp. MR-4 hypothetical protein YP_733514.1 1607249 R 60480 CDS YP_733515.1 113969722 4251399 1608058..1608261 1 NC_008321.1 KEGG: son:SO3115 hypothetical protein; hypothetical protein 1608261 4251399 Shewmr4_1380 Shewanella sp. MR-4 hypothetical protein YP_733515.1 1608058 D 60480 CDS YP_733516.1 113969723 4251400 1608326..1609363 1 NC_008321.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1609363 queA 4251400 queA Shewanella sp. MR-4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_733516.1 1608326 D 60480 CDS YP_733517.1 113969724 4251401 1609525..1610649 1 NC_008321.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1610649 tgt 4251401 tgt Shewanella sp. MR-4 queuine tRNA-ribosyltransferase YP_733517.1 1609525 D 60480 CDS YP_733518.1 113969725 4251402 1610676..1611008 1 NC_008321.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1611008 yajC 4251402 yajC Shewanella sp. MR-4 preprotein translocase subunit YajC YP_733518.1 1610676 D 60480 CDS YP_733519.1 113969726 4251403 1611026..1612876 1 NC_008321.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1612876 secD 4251403 secD Shewanella sp. MR-4 preprotein translocase subunit SecD YP_733519.1 1611026 D 60480 CDS YP_733520.1 113969727 4251404 1612889..1613836 1 NC_008321.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1613836 secF 4251404 secF Shewanella sp. MR-4 preprotein translocase subunit SecF YP_733520.1 1612889 D 60480 CDS YP_733521.1 113969728 4251405 1614093..1614410 1 NC_008321.1 KEGG: son:SO3109 hypothetical protein; hypothetical protein 1614410 4251405 Shewmr4_1386 Shewanella sp. MR-4 hypothetical protein YP_733521.1 1614093 D 60480 CDS YP_733522.1 113969729 4251406 1614698..1615057 1 NC_008321.1 PFAM: Rhodanese domain protein; KEGG: sdn:Sden_1406 rhodanese-like protein; rhodanese domain-containing protein 1615057 4251406 Shewmr4_1387 Shewanella sp. MR-4 rhodanese domain-containing protein YP_733522.1 1614698 D 60480 CDS YP_733523.1 113969730 4251407 1615093..1616004 1 NC_008321.1 TIGRFAM: siroheme synthase; KEGG: son:SO3108 precorrin-2 oxidase / ferrochelatase; siroheme synthase 1616004 4251407 Shewmr4_1388 Shewanella sp. MR-4 siroheme synthase YP_733523.1 1615093 D 60480 CDS YP_733524.1 113969731 4251408 1616090..1616635 1 NC_008321.1 PFAM: YaeQ family protein; KEGG: son:SO3107 hypothetical protein; YaeQ family protein 1616635 4251408 Shewmr4_1389 Shewanella sp. MR-4 YaeQ family protein YP_733524.1 1616090 D 60480 CDS YP_733525.1 113969732 4251409 complement(1616676..1619093) 1 NC_008321.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: son:SO3106 cold-active serine alkaline protease; peptidase S8/S53 subtilisin kexin sedolisin 1619093 4251409 Shewmr4_1390 Shewanella sp. MR-4 peptidase S8/S53 subtilisin kexin sedolisin YP_733525.1 1616676 R 60480 CDS YP_733526.1 113969733 4251410 complement(1619676..1620074) 1 NC_008321.1 PFAM: Rhodanese domain protein; KEGG: son:SO3105 phage shock protein E; rhodanese domain-containing protein 1620074 4251410 Shewmr4_1391 Shewanella sp. MR-4 rhodanese domain-containing protein YP_733526.1 1619676 R 60480 CDS YP_733527.1 113969734 4251411 complement(1620100..1620312) 1 NC_008321.1 KEGG: son:SO3104 hypothetical protein; hypothetical protein 1620312 4251411 Shewmr4_1392 Shewanella sp. MR-4 hypothetical protein YP_733527.1 1620100 R 60480 CDS YP_733528.1 113969735 4251412 complement(1620354..1623602) 1 NC_008321.1 PFAM: acriflavin resistance protein; KEGG: son:SO3103 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 1623602 4251412 Shewmr4_1393 Shewanella sp. MR-4 acriflavin resistance protein YP_733528.1 1620354 R 60480 CDS YP_733529.1 113969736 4251413 complement(1623638..1624651) 1 NC_008321.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3102 AcrA/AcrE family protein; RND family efflux transporter MFP subunit 1624651 4251413 Shewmr4_1394 Shewanella sp. MR-4 RND family efflux transporter MFP subunit YP_733529.1 1623638 R 60480 CDS YP_733530.1 113969737 4251414 complement(1624832..1625548) 1 NC_008321.1 PFAM: protein of unknown function DUF541; KEGG: son:SO3101 hypothetical protein; hypothetical protein 1625548 4251414 Shewmr4_1395 Shewanella sp. MR-4 hypothetical protein YP_733530.1 1624832 R 60480 CDS YP_733531.1 113969738 4251415 complement(1625707..1626093) 1 NC_008321.1 KEGG: son:SO3100 hypothetical protein; hypothetical protein 1626093 4251415 Shewmr4_1396 Shewanella sp. MR-4 hypothetical protein YP_733531.1 1625707 R 60480 CDS YP_733532.1 113969739 4251416 complement(1626194..1627489) 1 NC_008321.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO3099 long-chain fatty acid transport protein, putative; aromatic hydrocarbon degradation membrane protein 1627489 4251416 Shewmr4_1397 Shewanella sp. MR-4 aromatic hydrocarbon degradation membrane protein YP_733532.1 1626194 R 60480 CDS YP_733533.1 113969740 4251417 complement(1627830..1629281) 1 NC_008321.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: sdn:Sden_1520 sodium/proline symporter; sodium/proline symporter 1629281 4251417 Shewmr4_1398 Shewanella sp. MR-4 sodium/proline symporter YP_733533.1 1627830 R 60480 CDS YP_733534.1 113969741 4251418 complement(1629440..1630144) 1 NC_008321.1 KEGG: son:SO3097 hypothetical protein; hypothetical protein 1630144 4251418 Shewmr4_1399 Shewanella sp. MR-4 hypothetical protein YP_733534.1 1629440 R 60480 CDS YP_733535.1 113969742 4251419 complement(1630137..1630700) 1 NC_008321.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1630700 4251419 Shewmr4_1400 Shewanella sp. MR-4 RNA polymerase sigma factor YP_733535.1 1630137 R 60480 CDS YP_733536.1 113969743 4251420 complement(1630781..1632439) 1 NC_008321.1 KEGG: son:SO3095 hypothetical protein; hypothetical protein 1632439 4251420 Shewmr4_1401 Shewanella sp. MR-4 hypothetical protein YP_733536.1 1630781 R 60480 CDS YP_733537.1 113969744 4251421 complement(1632436..1634481) 1 NC_008321.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: von Willebrand factor, type A; Tetratricopeptide domain protein; KEGG: son:SO3094 TPR domain protein; TPR repeat-containing protein 1634481 4251421 Shewmr4_1402 Shewanella sp. MR-4 TPR repeat-containing protein YP_733537.1 1632436 R 60480 CDS YP_733538.1 113969745 4251422 complement(1634481..1635497) 1 NC_008321.1 PFAM: von Willebrand factor, type A; KEGG: son:SO3093 von Willebrand factor type A domain protein; von Willebrand factor, type A 1635497 4251422 Shewmr4_1403 Shewanella sp. MR-4 von Willebrand factor, type A YP_733538.1 1634481 R 60480 CDS YP_733539.1 113969746 4251423 complement(1635491..1636084) 1 NC_008321.1 KEGG: son:SO3092 hypothetical protein; hypothetical protein 1636084 4251423 Shewmr4_1404 Shewanella sp. MR-4 hypothetical protein YP_733539.1 1635491 R 60480 CDS YP_733540.1 113969747 4251983 complement(1636148..1637116) 1 NC_008321.1 PFAM: protein of unknown function DUF58; KEGG: son:SO3091 hypothetical protein; hypothetical protein 1637116 4251983 Shewmr4_1405 Shewanella sp. MR-4 hypothetical protein YP_733540.1 1636148 R 60480 CDS YP_733541.1 113969748 4251984 complement(1637190..1638146) 1 NC_008321.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: son:SO3090 MoxR domain protein; ATPase 1638146 4251984 Shewmr4_1406 Shewanella sp. MR-4 ATPase YP_733541.1 1637190 R 60480 CDS YP_733542.1 113969749 4251985 1638420..1639730 1 NC_008321.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 1639730 fadI 4251985 fadI Shewanella sp. MR-4 3-ketoacyl-CoA thiolase YP_733542.1 1638420 D 60480 CDS YP_733543.1 113969750 4251986 1639736..1641865 1 NC_008321.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 1641865 fadJ 4251986 fadJ Shewanella sp. MR-4 multifunctional fatty acid oxidation complex subunit alpha YP_733543.1 1639736 D 60480 CDS YP_733544.1 113969751 4251987 1642077..1642337 1 NC_008321.1 KEGG: son:SO3087 hypothetical protein; hypothetical protein 1642337 4251987 Shewmr4_1409 Shewanella sp. MR-4 hypothetical protein YP_733544.1 1642077 D 60480 CDS YP_733545.1 113969752 4251988 complement(1642610..1643350) 1 NC_008321.1 KEGG: son:SO3085 hypothetical protein; hypothetical protein 1643350 4251988 Shewmr4_1410 Shewanella sp. MR-4 hypothetical protein YP_733545.1 1642610 R 60480 CDS YP_733546.1 113969753 4251989 complement(1643414..1647706) 1 NC_008321.1 KEGG: son:SO3084 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1647706 4251989 Shewmr4_1411 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_733546.1 1643414 R 60480 CDS YP_733547.1 113969754 4251990 complement(1647958..1650747) 1 NC_008321.1 PFAM: peptidase M16 domain protein; KEGG: son:SO3083 peptidase, M16 family; Insulysin 1650747 4251990 Shewmr4_1412 Shewanella sp. MR-4 Insulysin YP_733547.1 1647958 R 60480 CDS YP_733548.1 113969755 4251991 1650917..1651387 1 NC_008321.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: son:SO3082 phosphohistidine phosphatase SixA; phosphohistidine phosphatase, SixA 1651387 4251991 Shewmr4_1413 Shewanella sp. MR-4 phosphohistidine phosphatase, SixA YP_733548.1 1650917 D 60480 CDS YP_733549.1 113969756 4251992 complement(1651454..1651984) 1 NC_008321.1 PFAM: Smr protein/MutS2; KEGG: son:SO3081 Smr domain protein; hypothetical protein 1651984 4251992 Shewmr4_1414 Shewanella sp. MR-4 hypothetical protein YP_733549.1 1651454 R 60480 CDS YP_733550.1 113969757 4251993 1652065..1653009 1 NC_008321.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1653009 4251993 Shewmr4_1415 Shewanella sp. MR-4 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_733550.1 1652065 D 60480 CDS YP_733551.1 113969758 4251994 1653138..1654232 1 NC_008321.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1654232 4251994 Shewmr4_1416 Shewanella sp. MR-4 chorismate synthase YP_733551.1 1653138 D 60480 CDS YP_733552.1 113969759 4251995 1654302..1655471 1 NC_008321.1 PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: son:SO3078 major facilitator family protein, putative; major facilitator transporter 1655471 4251995 Shewmr4_1417 Shewanella sp. MR-4 major facilitator transporter YP_733552.1 1654302 D 60480 CDS YP_733553.1 113969760 4251996 1655537..1656679 1 NC_008321.1 PFAM: ATP-NAD/AcoX kinase; KEGG: son:SO3077 hypothetical protein; ATP-NAD/AcoX kinase 1656679 4251996 Shewmr4_1418 Shewanella sp. MR-4 ATP-NAD/AcoX kinase YP_733553.1 1655537 D 60480 CDS YP_733554.1 113969761 4251997 1656735..1657016 1 NC_008321.1 KEGG: son:SO3076 hypothetical protein; hypothetical protein 1657016 4251997 Shewmr4_1419 Shewanella sp. MR-4 hypothetical protein YP_733554.1 1656735 D 60480 CDS YP_733555.1 113969762 4251998 1657020..1657628 1 NC_008321.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO3075 RNA methyltransferase, TrmH family, putative; tRNA/rRNA methyltransferase (SpoU) 1657628 4251998 Shewmr4_1420 Shewanella sp. MR-4 tRNA/rRNA methyltransferase (SpoU) YP_733555.1 1657020 D 60480 CDS YP_733556.1 113969763 4251999 complement(1657839..1659767) 1 NC_008321.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO3073 hypothetical protein; FAD dependent oxidoreductase 1659767 4251999 Shewmr4_1421 Shewanella sp. MR-4 FAD dependent oxidoreductase YP_733556.1 1657839 R 60480 CDS YP_733557.1 113969764 4252000 1660053..1661288 1 NC_008321.1 PFAM: beta-ketoacyl synthase; KEGG: son:SO3072 3-oxoacyl-(acyl-carrier-protein) synthase I; 3-oxoacyl-[acyl-carrier-protein] synthase I 1661288 4252000 Shewmr4_1422 Shewanella sp. MR-4 3-oxoacyl-[acyl-carrier-protein] synthase I YP_733557.1 1660053 D 60480 CDS YP_733558.1 113969765 4252001 1661702..1662832 1 NC_008321.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO3071 erythronate-4-phosphate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region 1662832 4252001 Shewmr4_1423 Shewanella sp. MR-4 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_733558.1 1661702 D 60480 CDS YP_733559.1 113969766 4252002 1662835..1663851 1 NC_008321.1 KEGG: son:SO3070 aspartate semialdehyde dehydrogenese; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; aspartate semialdehyde dehydrogenase 1663851 4252002 Shewmr4_1424 Shewanella sp. MR-4 aspartate semialdehyde dehydrogenase YP_733559.1 1662835 D 60480 CDS YP_733560.1 113969767 4252003 1664031..1667420 1 NC_008321.1 KEGG: son:SO3069 putative membrane protein; hypothetical protein 1667420 4252003 Shewmr4_1425 Shewanella sp. MR-4 hypothetical protein YP_733560.1 1664031 D 60480 CDS YP_733561.1 113969768 4252004 1667524..1668309 1 NC_008321.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1668309 truA 4252004 truA Shewanella sp. MR-4 tRNA pseudouridine synthase A YP_733561.1 1667524 D 60480 CDS YP_733562.1 113969769 4252005 1668361..1669659 1 NC_008321.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO3067 FolC bifunctional protein; FolC bifunctional protein 1669659 4252005 Shewmr4_1427 Shewanella sp. MR-4 FolC bifunctional protein YP_733562.1 1668361 D 60480 CDS YP_733563.1 113969770 4252006 1669652..1670476 1 NC_008321.1 PFAM: Sporulation domain protein; KEGG: son:SO3066 DedD protein; sporulation domain-containing protein 1670476 4252006 Shewmr4_1428 Shewanella sp. MR-4 sporulation domain-containing protein YP_733563.1 1669652 D 60480 CDS YP_733564.1 113969771 4252007 1670587..1671075 1 NC_008321.1 PFAM: Colicin V production protein; KEGG: son:SO3065 colicin V production protein; colicin V production protein 1671075 4252007 Shewmr4_1429 Shewanella sp. MR-4 colicin V production protein YP_733564.1 1670587 D 60480 CDS YP_733565.1 113969772 4252008 1671257..1672771 1 NC_008321.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1672771 4252008 Shewmr4_1430 Shewanella sp. MR-4 amidophosphoribosyltransferase YP_733565.1 1671257 D 60480 CDS YP_733566.1 113969773 4252009 complement(1672886..1674373) 1 NC_008321.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO3063 sodium:alanine symporter family protein; amino acid carrier protein 1674373 4252009 Shewmr4_1431 Shewanella sp. MR-4 amino acid carrier protein YP_733566.1 1672886 R 60480 CDS YP_733567.1 113969774 4252010 complement(1674736..1675023) 1 NC_008321.1 KEGG: son:SO3062 hypothetical protein; hypothetical protein 1675023 4252010 Shewmr4_1432 Shewanella sp. MR-4 hypothetical protein YP_733567.1 1674736 R 60480 CDS YP_733568.1 113969775 4252011 1675222..1677342 1 NC_008321.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1677342 4252011 Shewmr4_1433 Shewanella sp. MR-4 DNA topoisomerase III YP_733568.1 1675222 D 60480 CDS YP_733569.1 113969776 4252012 complement(1677687..1678976) 1 NC_008321.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO3055 proline iminopeptidase; prolyl aminopeptidase 2 1678976 4252012 Shewmr4_1434 Shewanella sp. MR-4 prolyl aminopeptidase 2 YP_733569.1 1677687 R 60480 CDS YP_733570.1 113969777 4252013 1679156..1679800 1 NC_008321.1 PFAM: beta-lactamase domain protein; KEGG: son:SO3054 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 1679800 4252013 Shewmr4_1435 Shewanella sp. MR-4 beta-lactamase domain-containing protein YP_733570.1 1679156 D 60480 CDS YP_733571.1 113969778 4252014 1680133..1681872 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3052 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1681872 4252014 Shewmr4_1436 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_733571.1 1680133 D 60480 CDS YP_733572.1 113969779 4252015 1682105..1683118 1 NC_008321.1 PFAM: protein of unknown function DUF182; KEGG: son:SO3051 hypothetical xanthine dehydrogenase accessory factor; hypothetical protein 1683118 4252015 Shewmr4_1437 Shewanella sp. MR-4 hypothetical protein YP_733572.1 1682105 D 60480 CDS YP_733573.1 113969780 4252016 1683118..1683804 1 NC_008321.1 KEGG: son:SO3050 hypothetical protein; hypothetical protein 1683804 4252016 Shewmr4_1438 Shewanella sp. MR-4 hypothetical protein YP_733573.1 1683118 D 60480 CDS YP_733574.1 113969781 4252017 1683808..1684305 1 NC_008321.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: son:SO3049 isoquinoline 1-oxidoreductase, alpha subunit, putative; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1684305 4252017 Shewmr4_1439 Shewanella sp. MR-4 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_733574.1 1683808 D 60480 CDS YP_733575.1 113969782 4252018 1684307..1686553 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: son:SO3048 isoquinoline 1-oxidoreductase, beta subunit, putative; twin-arginine translocation pathway signal 1686553 4252018 Shewmr4_1440 Shewanella sp. MR-4 twin-arginine translocation pathway signal YP_733575.1 1684307 D 60480 CDS YP_733576.1 113969783 4252019 1686924..1687415 1 NC_008321.1 PFAM: protein of unknown function DUF1097; KEGG: son:SO3047 hypothetical protein; hypothetical protein 1687415 4252019 Shewmr4_1441 Shewanella sp. MR-4 hypothetical protein YP_733576.1 1686924 D 60480 CDS YP_733577.1 113969784 4252020 1687531..1688985 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: sdn:Sden_0861 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1688985 4252020 Shewmr4_1442 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_733577.1 1687531 D 60480 CDS YP_733578.1 113969785 4252021 complement(1689444..1689749) 1 NC_008321.1 KEGG: son:SO2209 hypothetical protein; hypothetical protein 1689749 4252021 Shewmr4_1443 Shewanella sp. MR-4 hypothetical protein YP_733578.1 1689444 R 60480 CDS YP_733579.1 113969786 4252022 1689953..1691176 1 NC_008321.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: eci:UTI89_P067 transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein 1691176 4252022 Shewmr4_1444 Shewanella sp. MR-4 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_733579.1 1689953 D 60480 CDS YP_733580.1 113969787 4252023 1691502..1692464 1 NC_008321.1 KEGG: cps:CPS_2938 hypothetical protein; hypothetical protein 1692464 4252023 Shewmr4_1445 Shewanella sp. MR-4 hypothetical protein YP_733580.1 1691502 D 60480 CDS YP_733581.1 113969788 4252024 1692585..1693571 1 NC_008321.1 PFAM: restriction endonuclease; KEGG: dde:Dde_2800 hypothetical protein; restriction endonuclease 1693571 4252024 Shewmr4_1446 Shewanella sp. MR-4 restriction endonuclease YP_733581.1 1692585 D 60480 CDS YP_733582.1 113969789 4252025 complement(1694062..1694874) 1 NC_008321.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 1694874 4252025 Shewmr4_1447 Shewanella sp. MR-4 exonuclease III YP_733582.1 1694062 R 60480 CDS YP_733583.1 113969790 4252026 complement(1694874..1695173) 1 NC_008321.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1695173 4252026 Shewmr4_1448 Shewanella sp. MR-4 YciI-like protein YP_733583.1 1694874 R 60480 CDS YP_733584.1 113969791 4252027 complement(1695173..1695718) 1 NC_008321.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1695718 4252027 Shewmr4_1449 Shewanella sp. MR-4 intracellular septation protein A YP_733584.1 1695173 R 60480 CDS YP_733585.1 113969792 4252028 complement(1695880..1696917) 1 NC_008321.1 PFAM: ferric iron reductase; KEGG: son:SO3034 ferric iron reductase protein, putative; ferric iron reductase 1696917 4252028 Shewmr4_1450 Shewanella sp. MR-4 ferric iron reductase YP_733585.1 1695880 R 60480 CDS YP_733586.1 113969793 4252029 complement(1697006..1699219) 1 NC_008321.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO3033 ferric alcaligin siderophore receptor; TonB-dependent siderophore receptor 1699219 4252029 Shewmr4_1451 Shewanella sp. MR-4 TonB-dependent siderophore receptor YP_733586.1 1697006 R 60480 CDS YP_733587.1 113969794 4252030 complement(1699305..1701194) 1 NC_008321.1 PFAM: IucA/IucC family protein; KEGG: son:SO3032 siderophore biosynthesis protein, putative; IucA/IucC family protein 1701194 4252030 Shewmr4_1452 Shewanella sp. MR-4 IucA/IucC family protein YP_733587.1 1699305 R 60480 CDS YP_733588.1 113969795 4252031 complement(1701191..1701874) 1 NC_008321.1 KEGG: son:SO3031 siderophore biosynthesis protein, putative; siderophore biosynthesis protein 1701874 4252031 Shewmr4_1453 Shewanella sp. MR-4 siderophore biosynthesis protein YP_733588.1 1701191 R 60480 CDS YP_733589.1 113969796 4252032 complement(1701874..1703364) 1 NC_008321.1 KEGG: son:SO3030 siderophore biosynthesis protein; L-lysine 6-monooxygenase (NADPH) 1703364 4252032 Shewmr4_1454 Shewanella sp. MR-4 L-lysine 6-monooxygenase (NADPH) YP_733589.1 1701874 R 60480 CDS YP_733590.1 113969797 4252033 complement(1703937..1704221) 1 NC_008321.1 KEGG: son:SO3029 hypothetical protein; hypothetical protein 1704221 4252033 Shewmr4_1455 Shewanella sp. MR-4 hypothetical protein YP_733590.1 1703937 R 60480 CDS YP_733591.1 113969798 4252034 complement(1704474..1704917) 1 NC_008321.1 KEGG: son:SO3027 hypothetical protein; hypothetical protein 1704917 4252034 Shewmr4_1456 Shewanella sp. MR-4 hypothetical protein YP_733591.1 1704474 R 60480 CDS YP_733592.1 113969799 4252035 complement(1705126..1705962) 1 NC_008321.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1705962 trpA 4252035 trpA Shewanella sp. MR-4 tryptophan synthase subunit alpha YP_733592.1 1705126 R 60480 CDS YP_733593.1 113969800 4252036 complement(1705968..1707158) 1 NC_008321.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1707158 4252036 Shewmr4_1458 Shewanella sp. MR-4 tryptophan synthase subunit beta YP_733593.1 1705968 R 60480 CDS YP_733594.1 113969801 4252037 complement(1707267..1708754) 1 NC_008321.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1708754 4252037 Shewmr4_1459 Shewanella sp. MR-4 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_733594.1 1707267 R 60480 CDS YP_733595.1 113969802 4252038 complement(1708754..1709797) 1 NC_008321.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1709797 trpD 4252038 trpD Shewanella sp. MR-4 anthranilate phosphoribosyltransferase YP_733595.1 1708754 R 60480 CDS YP_733596.1 113969803 4252039 complement(1709797..1710405) 1 NC_008321.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 1710405 4252039 Shewmr4_1461 Shewanella sp. MR-4 anthranilate synthase component II YP_733596.1 1709797 R 60480 CDS YP_733597.1 113969804 4252040 complement(1710416..1712125) 1 NC_008321.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1712125 4252040 Shewmr4_1462 Shewanella sp. MR-4 anthranilate synthase component I YP_733597.1 1710416 R 60480 CDS YP_733598.1 113969805 4252041 1712495..1713355 1 NC_008321.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: son:SO3017 TrpH family protein; phosphotransferase domain-containing protein 1713355 4252041 Shewmr4_1463 Shewanella sp. MR-4 phosphotransferase domain-containing protein YP_733598.1 1712495 D 60480 CDS YP_733599.1 113969806 4252042 1713352..1713972 1 NC_008321.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain protein; KEGG: son:SO3016 Sua5/YciO/YrdC/YwlC family protein; translation factor SUA5 1713972 4252042 Shewmr4_1464 Shewanella sp. MR-4 translation factor SUA5 YP_733599.1 1713352 D 60480 CDS YP_733600.1 113969807 4252043 1714163..1714951 1 NC_008321.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: son:SO3015 putative segregation and condensation protein A; condensin subunit ScpA 1714951 4252043 Shewmr4_1465 Shewanella sp. MR-4 condensin subunit ScpA YP_733600.1 1714163 D 60480 CDS YP_733601.1 113969808 4252044 1714955..1715551 1 NC_008321.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: son:SO3014 putative segregation and condensation protein B; condensin subunit ScpB 1715551 4252044 Shewmr4_1466 Shewanella sp. MR-4 condensin subunit ScpB YP_733601.1 1714955 D 60480 CDS YP_733602.1 113969809 4252045 1715544..1716419 1 NC_008321.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sdn:Sden_2436 pseudouridine synthase, Rsu; ribosomal large subunit pseudouridine synthase B 1716419 4252045 Shewmr4_1467 Shewanella sp. MR-4 ribosomal large subunit pseudouridine synthase B YP_733602.1 1715544 D 60480 CDS YP_733603.1 113969810 4252046 complement(1716554..1717291) 1 NC_008321.1 PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: son:SO2935 short chain dehydrogenase; short chain dehydrogenase 1717291 4252046 Shewmr4_1468 Shewanella sp. MR-4 short chain dehydrogenase YP_733603.1 1716554 R 60480 CDS YP_733604.1 113969811 4252047 1717553..1720036 1 NC_008321.1 KEGG: son:SO2934 hypothetical protein; hypothetical protein 1720036 4252047 Shewmr4_1469 Shewanella sp. MR-4 hypothetical protein YP_733604.1 1717553 D 60480 CDS YP_733605.1 113969812 4252048 1720149..1721165 1 NC_008321.1 SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 1721165 4252048 Shewmr4_1470 Shewanella sp. MR-4 putative periplasmic protease YP_733605.1 1720149 D 60480 CDS YP_733606.1 113969813 4252049 1721359..1722378 1 NC_008321.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: son:SO2932 transcriptional regulator, AraC family; AraC family transcriptional regulator 1722378 4252049 Shewmr4_1471 Shewanella sp. MR-4 AraC family transcriptional regulator YP_733606.1 1721359 D 60480 CDS YP_733607.1 113969814 4252050 complement(1722426..1723127) 1 NC_008321.1 KEGG: cps:CPS_3023 hypothetical protein; hypothetical protein 1723127 4252050 Shewmr4_1472 Shewanella sp. MR-4 hypothetical protein YP_733607.1 1722426 R 60480 CDS YP_733608.1 113969815 4252051 complement(1723299..1724483) 1 NC_008321.1 KEGG: son:SO2931 hypothetical protein; hypothetical protein 1724483 4252051 Shewmr4_1473 Shewanella sp. MR-4 hypothetical protein YP_733608.1 1723299 R 60480 CDS YP_733609.1 113969816 4252052 complement(1724622..1727357) 1 NC_008321.1 KEGG: son:SO2930 hypothetical protein; hypothetical protein 1727357 4252052 Shewmr4_1474 Shewanella sp. MR-4 hypothetical protein YP_733609.1 1724622 R 60480 CDS YP_733610.1 113969817 4252053 1727795..1730347 1 NC_008321.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: ade:Adeh_2257 hypothetical protein; hypothetical protein 1730347 4252053 Shewmr4_1475 Shewanella sp. MR-4 hypothetical protein YP_733610.1 1727795 D 60480 CDS YP_733611.1 113969818 4252054 1730355..1731086 1 NC_008321.1 PFAM: virulence factor family protein; KEGG: atc:AGR_C_4582 virulence gene acvB product; virulence factor family protein 1731086 4252054 Shewmr4_1476 Shewanella sp. MR-4 virulence factor family protein YP_733611.1 1730355 D 60480 CDS YP_733612.1 113969819 4252055 complement(1731186..1732253) 1 NC_008321.1 KEGG: son:SO2929 hypothetical protein; hypothetical protein 1732253 4252055 Shewmr4_1477 Shewanella sp. MR-4 hypothetical protein YP_733612.1 1731186 R 60480 CDS YP_733613.1 113969820 4252056 complement(1732398..1732997) 1 NC_008321.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: son:SO2928 acyl-CoA thioesterase I, putative; arylesterase 1732997 4252056 Shewmr4_1478 Shewanella sp. MR-4 arylesterase YP_733613.1 1732398 R 60480 CDS YP_733614.1 113969821 4252057 1733050..1733799 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2927 ABC transporter, ATP-binding protein; ABC transporter-like protein 1733799 4252057 Shewmr4_1479 Shewanella sp. MR-4 ABC transporter-like protein YP_733614.1 1733050 D 60480 CDS YP_733615.1 113969822 4252058 1733803..1736304 1 NC_008321.1 PFAM: protein of unknown function DUF214; KEGG: son:SO2926 ABC transporter, permease, putative; hypothetical protein 1736304 4252058 Shewmr4_1480 Shewanella sp. MR-4 hypothetical protein YP_733615.1 1733803 D 60480 CDS YP_733616.1 113969823 4252059 1736645..1737307 1 NC_008321.1 KEGG: son:SO2924 signal peptidase I family protein; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 1737307 4252059 Shewmr4_1481 Shewanella sp. MR-4 signal peptidase I YP_733616.1 1736645 D 60480 CDS YP_733617.1 113969824 4252060 complement(1737394..1738617) 1 NC_008321.1 TIGRFAM: sodium/glutamate symporter; PFAM: sodium/glutamate symporter; KEGG: son:SO2923 sodium/glutamate symporter; sodium/glutamate symporter 1738617 4252060 Shewmr4_1482 Shewanella sp. MR-4 sodium/glutamate symporter YP_733617.1 1737394 R 60480 CDS YP_733618.1 113969825 4252061 complement(1739183..1740073) 1 NC_008321.1 TIGRFAM: conserved hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: son:SO2922 hypothetical protein; hypothetical protein 1740073 4252061 Shewmr4_1483 Shewanella sp. MR-4 hypothetical protein YP_733618.1 1739183 R 60480 CDS YP_733619.1 113969826 4252062 complement(1740144..1740512) 1 NC_008321.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 1740512 folX 4252062 folX Shewanella sp. MR-4 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase YP_733619.1 1740144 R 60480 CDS YP_733620.1 113969827 4252063 1740611..1741717 1 NC_008321.1 PFAM: protein of unknown function UPF0118; KEGG: son:SO2920 hypothetical protein; hypothetical protein 1741717 4252063 Shewmr4_1485 Shewanella sp. MR-4 hypothetical protein YP_733620.1 1740611 D 60480 CDS YP_733621.1 113969828 4252064 1741724..1742635 1 NC_008321.1 PFAM: conserved hypothetical protein 95; KEGG: son:SO2919 hypothetical protein; hypothetical protein 1742635 4252064 Shewmr4_1486 Shewanella sp. MR-4 hypothetical protein YP_733621.1 1741724 D 60480 CDS YP_733622.1 113969829 4252065 complement(1742753..1742977) 1 NC_008321.1 KEGG: son:SO4126 hypothetical protein; hypothetical protein 1742977 4252065 Shewmr4_1487 Shewanella sp. MR-4 hypothetical protein YP_733622.1 1742753 R 60480 CDS YP_733623.1 113969830 4252066 1743299..1743391 1 NC_008321.1 KEGG: son:SO2918 hypothetical protein; hypothetical protein 1743391 4252066 Shewmr4_1488 Shewanella sp. MR-4 hypothetical protein YP_733623.1 1743299 D 60480 CDS YP_733624.1 113969831 4252067 complement(1743523..1743957) 1 NC_008321.1 KEGG: son:SO2917 hypothetical protein; hypothetical protein 1743957 4252067 Shewmr4_1489 Shewanella sp. MR-4 hypothetical protein YP_733624.1 1743523 R 60480 CDS YP_733625.1 113969832 4252068 complement(1744416..1746569) 1 NC_008321.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 1746569 4252068 Shewmr4_1490 Shewanella sp. MR-4 phosphate acetyltransferase YP_733625.1 1744416 R 60480 CDS YP_733626.1 113969833 4252069 complement(1746692..1747891) 1 NC_008321.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1747891 4252069 Shewmr4_1491 Shewanella sp. MR-4 acetate kinase YP_733626.1 1746692 R 60480 CDS YP_733627.1 113969834 4252070 1747979..1748476 1 NC_008321.1 PFAM: protein of unknown function DUF412; KEGG: son:SO2914 hypothetical protein; hypothetical protein 1748476 4252070 Shewmr4_1492 Shewanella sp. MR-4 hypothetical protein YP_733627.1 1747979 D 60480 CDS YP_733628.1 113969835 4252071 complement(1748492..1749232) 1 NC_008321.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 1749232 pflA 4252071 pflA Shewanella sp. MR-4 pyruvate formate lyase-activating enzyme 1 YP_733628.1 1748492 R 60480 CDS YP_733629.1 113969836 4252072 complement(1749296..1751578) 1 NC_008321.1 KEGG: son:SO2912 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; formate acetyltransferase 1751578 4252072 Shewmr4_1494 Shewanella sp. MR-4 formate acetyltransferase YP_733629.1 1749296 R 60480 CDS YP_733630.1 113969837 4252073 1752609..1753583 1 NC_008321.1 TIGRFAM: formate/nitrite transporter; PFAM: formate/nitrite transporter; KEGG: son:SO2911 formate transporter, putative; formate/nitrite transporter 1753583 4252073 Shewmr4_1495 Shewanella sp. MR-4 formate/nitrite transporter YP_733630.1 1752609 D 60480 CDS YP_733631.1 113969838 4252074 1753821..1755389 1 NC_008321.1 PFAM: C4-dicarboxylate anaerobic carrier; Na+/H+ antiporter NhaC; KEGG: vpa:VPA1014 putative S-transferase; hypothetical protein 1755389 4252074 Shewmr4_1496 Shewanella sp. MR-4 hypothetical protein YP_733631.1 1753821 D 60480 CDS YP_733632.1 113969839 4252075 complement(1755543..1758194) 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2907 TonB-dependent receptor domain protein; TonB-dependent receptor 1758194 4252075 Shewmr4_1497 Shewanella sp. MR-4 TonB-dependent receptor YP_733632.1 1755543 R 60480 CDS YP_733633.1 113969840 4252076 complement(1758880..1759869) 1 NC_008321.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: son:SO2906 hypothetical protein; C4-dicarboxylate transporter/malic acid transport protein 1759869 4252076 Shewmr4_1498 Shewanella sp. MR-4 C4-dicarboxylate transporter/malic acid transport protein YP_733633.1 1758880 R 60480 CDS YP_733634.1 113969841 4252077 complement(1759991..1761064) 1 NC_008321.1 PFAM: O-methyltransferase, family 2; Methyltransferase type 12; KEGG: son:SO2905 O-methyltransferase, putative; type 12 methyltransferase 1761064 4252077 Shewmr4_1499 Shewanella sp. MR-4 type 12 methyltransferase YP_733634.1 1759991 R 60480 CDS YP_733635.1 113969842 4252078 complement(1761278..1762246) 1 NC_008321.1 TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: son:SO2903 cysteine synthase A; cysteine synthase 1762246 4252078 Shewmr4_1500 Shewanella sp. MR-4 cysteine synthase YP_733635.1 1761278 R 60480 CDS YP_733636.1 113969843 4252079 1762492..1763826 1 NC_008321.1 PFAM: RDD domain containing protein; KEGG: son:SO2902 hypothetical protein; RDD domain-containing protein 1763826 4252079 Shewmr4_1501 Shewanella sp. MR-4 RDD domain-containing protein YP_733636.1 1762492 D 60480 CDS YP_733637.1 113969844 4252080 1763823..1764944 1 NC_008321.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 1764944 4252080 Shewmr4_1502 Shewanella sp. MR-4 3-oxoacyl-(acyl carrier protein) synthase III YP_733637.1 1763823 D 60480 CDS YP_733638.1 113969845 4252081 1765117..1765566 1 NC_008321.1 KEGG: pfo:Pfl_1677 hypothetical protein; hypothetical protein 1765566 4252081 Shewmr4_1503 Shewanella sp. MR-4 hypothetical protein YP_733638.1 1765117 D 60480 CDS YP_733639.1 113969846 4252082 complement(1765625..1768024) 1 NC_008321.1 KEGG: son:SO2900 hypothetical protein; hypothetical protein 1768024 4252082 Shewmr4_1504 Shewanella sp. MR-4 hypothetical protein YP_733639.1 1765625 R 60480 CDS YP_733640.1 113969847 4252083 complement(1768154..1768933) 1 NC_008321.1 putative role in sulfur assimilation; putative sulfate transport protein CysZ 1768933 4252083 Shewmr4_1505 Shewanella sp. MR-4 putative sulfate transport protein CysZ YP_733640.1 1768154 R 60480 CDS YP_733641.1 113969848 4252084 1769175..1772603 1 NC_008321.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: son:SO2898 SMC family protein; chromosome segregation protein SMC 1772603 4252084 Shewmr4_1506 Shewanella sp. MR-4 chromosome segregation protein SMC YP_733641.1 1769175 D 60480 CDS YP_733642.1 113969849 4252085 1772630..1773670 1 NC_008321.1 KEGG: son:SO2897 cell division protein ZipA; TIGRFAM: cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; SMART: cell division protein ZipA; cell division protein ZipA 1773670 4252085 Shewmr4_1507 Shewanella sp. MR-4 cell division protein ZipA YP_733642.1 1772630 D 60480 CDS YP_733643.1 113969850 4252086 1773763..1775835 1 NC_008321.1 KEGG: son:SO2896 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; SMART: Helix-hairpin-helix DNA-binding, class 1; DNA ligase, NAD-dependent 1775835 4252086 Shewmr4_1508 Shewanella sp. MR-4 DNA ligase, NAD-dependent YP_733643.1 1773763 D 60480 CDS YP_733644.1 113969851 4252087 1776061..1776555 1 NC_008321.1 KEGG: son:SO2863 hypothetical protein; hypothetical protein 1776555 4252087 Shewmr4_1509 Shewanella sp. MR-4 hypothetical protein YP_733644.1 1776061 D 60480 CDS YP_733645.1 113969852 4252088 1776765..1777970 1 NC_008321.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: son:SO2862 HDIG domain protein; metal dependent phosphohydrolase 1777970 4252088 Shewmr4_1510 Shewanella sp. MR-4 metal dependent phosphohydrolase YP_733645.1 1776765 D 60480 CDS YP_733646.1 113969853 4252089 1778033..1778884 1 NC_008321.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: son:SO2861 hypothetical protein; NAD-dependent epimerase/dehydratase 1778884 4252089 Shewmr4_1511 Shewanella sp. MR-4 NAD-dependent epimerase/dehydratase YP_733646.1 1778033 D 60480 CDS YP_733647.1 113969854 4252090 1779015..1779638 1 NC_008321.1 PFAM: DSBA oxidoreductase; KEGG: son:SO2860 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase 1779638 4252090 Shewmr4_1512 Shewanella sp. MR-4 DSBA oxidoreductase YP_733647.1 1779015 D 60480 CDS YP_733648.1 113969855 4252091 1780076..1780342 1 NC_008321.1 KEGG: son:SO2858 hypothetical protein; hypothetical protein 1780342 4252091 Shewmr4_1513 Shewanella sp. MR-4 hypothetical protein YP_733648.1 1780076 D 60480 CDS YP_733649.1 113969856 4252092 1780354..1782090 1 NC_008321.1 PFAM: Na+/solute symporter; KEGG: son:SO2857 sodium/solute symporter family protein; Na+/solute symporter 1782090 4252092 Shewmr4_1514 Shewanella sp. MR-4 Na+/solute symporter YP_733649.1 1780354 D 60480 CDS YP_733650.1 113969857 4252093 1782240..1784102 1 NC_008321.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: son:SO2856 CBS domain protein; cyclic nucleotide-binding protein 1784102 4252093 Shewmr4_1515 Shewanella sp. MR-4 cyclic nucleotide-binding protein YP_733650.1 1782240 D 60480 CDS YP_733651.1 113969858 4252094 1784102..1784788 1 NC_008321.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: son:SO2855 exonuclease; exonuclease, RNase T and DNA polymerase III 1784788 4252094 Shewmr4_1516 Shewanella sp. MR-4 exonuclease, RNase T and DNA polymerase III YP_733651.1 1784102 D 60480 CDS YP_733652.1 113969859 4252095 complement(1785036..1785461) 1 NC_008321.1 PFAM: regulatory protein, MarR; KEGG: ppr:PBPRB1157 putative transcriptional regulator, MarR family; MarR family transcriptional regulator 1785461 4252095 Shewmr4_1517 Shewanella sp. MR-4 MarR family transcriptional regulator YP_733652.1 1785036 R 60480 CDS YP_733653.1 113969860 4252096 1785695..1786690 1 NC_008321.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: ppr:PBPRB1158 hypothetical alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase 1786690 4252096 Shewmr4_1518 Shewanella sp. MR-4 alcohol dehydrogenase YP_733653.1 1785695 D 60480 CDS YP_733654.1 113969861 4252097 1787129..1787728 1 NC_008321.1 KEGG: son:SO2854 hypothetical protein; hypothetical protein 1787728 4252097 Shewmr4_1519 Shewanella sp. MR-4 hypothetical protein YP_733654.1 1787129 D 60480 CDS YP_733655.1 113969862 4252098 complement(1787773..1788837) 1 NC_008321.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-(acyl carrier protein) synthase III 1788837 4252098 Shewmr4_1520 Shewanella sp. MR-4 3-oxoacyl-(acyl carrier protein) synthase III YP_733655.1 1787773 R 60480 CDS YP_733656.1 113969863 4252099 complement(1788930..1789601) 1 NC_008321.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: son:SO2852 transcriptional regulator, GntR family; GntR family transcriptional regulator 1789601 4252099 Shewmr4_1521 Shewanella sp. MR-4 GntR family transcriptional regulator YP_733656.1 1788930 R 60480 CDS YP_733657.1 113969864 4252100 1789919..1790470 1 NC_008321.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 1790470 4252100 Shewmr4_1522 Shewanella sp. MR-4 D,D-heptose 1,7-bisphosphate phosphatase YP_733657.1 1789919 D 60480 CDS YP_733658.1 113969865 4252101 complement(1796722..1797426) 1 NC_008321.1 KEGG: son:SO3571 hypothetical protein; hypothetical protein 1797426 4252101 Shewmr4_1523 Shewanella sp. MR-4 hypothetical protein YP_733658.1 1796722 R 60480 CDS YP_733659.1 113969866 4252102 complement(1797653..1799710) 1 NC_008321.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 1799710 cpdB 4252102 cpdB Shewanella sp. MR-4 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein YP_733659.1 1797653 R 60480 CDS YP_733660.1 113969867 4252103 1800402..1802549 1 NC_008321.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO3564 peptidyl-dipeptidase Dcp; peptidyl-dipeptidase Dcp 1802549 4252103 Shewmr4_1525 Shewanella sp. MR-4 peptidyl-dipeptidase Dcp YP_733660.1 1800402 D 60480 CDS YP_733661.1 113969868 4252104 1802775..1803398 1 NC_008321.1 SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO3563 SM-20 domain protein; prolyl 4-hydroxylase subunit alpha 1803398 4252104 Shewmr4_1526 Shewanella sp. MR-4 prolyl 4-hydroxylase subunit alpha YP_733661.1 1802775 D 60480 CDS YP_733662.1 113969869 4252105 1803815..1804417 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2850 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 1804417 4252105 Shewmr4_1527 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_733662.1 1803815 D 60480 CDS YP_733663.1 113969870 4252106 1804499..1804963 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2849 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 1804963 4252106 Shewmr4_1528 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_733663.1 1804499 D 60480 CDS YP_733664.1 113969871 4252107 1804998..1805393 1 NC_008321.1 KEGG: son:SO2848 hypothetical protein; hypothetical protein 1805393 4252107 Shewmr4_1529 Shewanella sp. MR-4 hypothetical protein YP_733664.1 1804998 D 60480 CDS YP_733665.1 113969872 4252108 1805655..1806041 1 NC_008321.1 hypothetical protein 1806041 4252108 Shewmr4_1530 Shewanella sp. MR-4 hypothetical protein YP_733665.1 1805655 D 60480 CDS YP_733666.1 113969873 4252109 1806264..1807328 1 NC_008321.1 KEGG: son:SO1840 hypothetical protein; hypothetical protein 1807328 4252109 Shewmr4_1531 Shewanella sp. MR-4 hypothetical protein YP_733666.1 1806264 D 60480 CDS YP_733667.1 113969874 4252110 1807321..1808445 1 NC_008321.1 KEGG: son:SO1842 hypothetical protein; hypothetical protein 1808445 4252110 Shewmr4_1532 Shewanella sp. MR-4 hypothetical protein YP_733667.1 1807321 D 60480 CDS YP_733668.1 113969875 4252111 1808445..1808960 1 NC_008321.1 KEGG: son:SO1843 hypothetical protein; hypothetical protein 1808960 4252111 Shewmr4_1533 Shewanella sp. MR-4 hypothetical protein YP_733668.1 1808445 D 60480 CDS YP_733669.1 113969876 4252112 1809200..1812046 1 NC_008321.1 PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: son:SO1844 extracellular nuclease, putative; PKD domain-containing protein 1812046 4252112 Shewmr4_1534 Shewanella sp. MR-4 PKD domain-containing protein YP_733669.1 1809200 D 60480 CDS YP_733670.1 113969877 4252113 1812253..1812681 1 NC_008321.1 KEGG: son:SO1845 hypothetical protein; hypothetical protein 1812681 4252113 Shewmr4_1535 Shewanella sp. MR-4 hypothetical protein YP_733670.1 1812253 D 60480 CDS YP_733671.1 113969878 4252114 complement(1812739..1813635) 1 NC_008321.1 KEGG: son:SO1846 hypothetical protein; hypothetical protein 1813635 4252114 Shewmr4_1536 Shewanella sp. MR-4 hypothetical protein YP_733671.1 1812739 R 60480 CDS YP_733672.1 113969879 4252115 complement(1813646..1814404) 1 NC_008321.1 KEGG: son:SO1848 hypothetical protein; hypothetical protein 1814404 4252115 Shewmr4_1537 Shewanella sp. MR-4 hypothetical protein YP_733672.1 1813646 R 60480 CDS YP_733673.1 113969880 4252116 complement(1814404..1814943) 1 NC_008321.1 KEGG: son:SO1849 hypothetical protein; hypothetical protein 1814943 4252116 Shewmr4_1538 Shewanella sp. MR-4 hypothetical protein YP_733673.1 1814404 R 60480 CDS YP_733674.1 113969881 4252117 complement(1815079..1815363) 1 NC_008321.1 PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO1850 DnaJ domain protein; heat shock protein DnaJ domain-containing protein 1815363 4252117 Shewmr4_1539 Shewanella sp. MR-4 heat shock protein DnaJ domain-containing protein YP_733674.1 1815079 R 60480 CDS YP_733675.1 113969882 4252118 1816672..1818813 1 NC_008321.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1818813 rlmL 4252118 rlmL Shewanella sp. MR-4 23S rRNA m(2)G2445 methyltransferase YP_733675.1 1816672 D 60480 CDS YP_733676.1 113969883 4252119 1818806..1819045 1 NC_008321.1 PFAM: glutaredoxin 2; KEGG: son:SO1852 hypothetical protein; glutaredoxin 2 1819045 4252119 Shewmr4_1541 Shewanella sp. MR-4 glutaredoxin 2 YP_733676.1 1818806 D 60480 CDS YP_733677.1 113969884 4252120 1819047..1820969 1 NC_008321.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1820969 4252120 Shewmr4_1542 Shewanella sp. MR-4 ABC transporter ATPase YP_733677.1 1819047 D 60480 CDS YP_733678.1 113969885 4252121 1820998..1822824 1 NC_008321.1 KEGG: son:SO1854 hypothetical protein; hypothetical protein 1822824 4252121 Shewmr4_1543 Shewanella sp. MR-4 hypothetical protein YP_733678.1 1820998 D 60480 CDS YP_733679.1 113969886 4252122 1823012..1823188 1 NC_008321.1 PFAM: ribosome modulation factor; KEGG: son:SO1855 ribosome modulation factor; ribosome modulation factor 1823188 4252122 Shewmr4_1544 Shewanella sp. MR-4 ribosome modulation factor YP_733679.1 1823012 D 60480 CDS YP_733680.1 113969887 4252123 complement(1823296..1823811) 1 NC_008321.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 1823811 4252123 Shewmr4_1545 Shewanella sp. MR-4 3-hydroxydecanoyl-(acyl carrier protein) dehydratase YP_733680.1 1823296 R 60480 CDS YP_733681.1 113969888 4252124 complement(1823885..1825633) 1 NC_008321.1 KEGG: son:SO1857 hypothetical ATP-dependent protease; ATP-dependent protease 1825633 4252124 Shewmr4_1546 Shewanella sp. MR-4 ATP-dependent protease YP_733681.1 1823885 R 60480 CDS YP_733682.1 113969889 4252125 1827237..1827881 1 NC_008321.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 1827881 4252125 Shewmr4_1547 Shewanella sp. MR-4 response regulator YP_733682.1 1827237 D 60480 CDS YP_733683.1 113969890 4252126 1827991..1829820 1 NC_008321.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1829820 uvrC 4252126 uvrC Shewanella sp. MR-4 excinuclease ABC subunit C YP_733683.1 1827991 D 60480 CDS YP_733684.1 113969891 4252127 1829868..1830416 1 NC_008321.1 KEGG: son:SO1862 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1830416 4252127 Shewmr4_1549 Shewanella sp. MR-4 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_733684.1 1829868 D 60480 CDS YP_733685.1 113969892 4252128 complement(1831416..1831691) 1 NC_008321.1 PFAM: histone family protein DNA-binding protein; KEGG: son:SO1863 DNA-binding protein, HU family; histone family protein DNA-binding protein 1831691 4252128 Shewmr4_1550 Shewanella sp. MR-4 histone family protein DNA-binding protein YP_733685.1 1831416 R 60480 CDS YP_733686.1 113969893 4252129 complement(1831799..1832344) 1 NC_008321.1 KEGG: msu:MS1955 hypothetical protein; hypothetical protein 1832344 4252129 Shewmr4_1551 Shewanella sp. MR-4 hypothetical protein YP_733686.1 1831799 R 60480 CDS YP_733687.1 113969894 4252130 complement(1832963..1833871) 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1865 ABC transporter, ATP-binding protein; ABC transporter-like protein 1833871 4252130 Shewmr4_1552 Shewanella sp. MR-4 ABC transporter-like protein YP_733687.1 1832963 R 60480 CDS YP_733688.1 113969895 4252131 complement(1833868..1834698) 1 NC_008321.1 KEGG: son:SO1866 hypothetical protein; hypothetical protein 1834698 4252131 Shewmr4_1553 Shewanella sp. MR-4 hypothetical protein YP_733688.1 1833868 R 60480 CDS YP_733689.1 113969896 4252132 complement(1834792..1835460) 1 NC_008321.1 PFAM: protein of unknown function DUF480; KEGG: son:SO1867 hypothetical protein; hypothetical protein 1835460 4252132 Shewmr4_1554 Shewanella sp. MR-4 hypothetical protein YP_733689.1 1834792 R 60480 CDS YP_733690.1 113969897 4252133 complement(1835627..1836466) 1 NC_008321.1 KEGG: son:SO1868 hypothetical protein; hypothetical protein 1836466 4252133 Shewmr4_1555 Shewanella sp. MR-4 hypothetical protein YP_733690.1 1835627 R 60480 CDS YP_733691.1 113969898 4252134 1836943..1837095 1 NC_008321.1 hypothetical protein 1837095 4252134 Shewmr4_1556 Shewanella sp. MR-4 hypothetical protein YP_733691.1 1836943 D 60480 CDS YP_733692.1 113969899 4252135 1837558..1839471 1 NC_008321.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 1839471 4252135 Shewmr4_1557 Shewanella sp. MR-4 arginine decarboxylase YP_733692.1 1837558 D 60480 CDS YP_733693.1 113969900 4252136 1839753..1840688 1 NC_008321.1 PFAM: S-adenosylmethionine decarboxylase; KEGG: son:SO1871 S-adenosylmethionine decarboxylase proenzyme, putative; S-adenosylmethionine decarboxylase 1840688 4252136 Shewmr4_1558 Shewanella sp. MR-4 S-adenosylmethionine decarboxylase YP_733693.1 1839753 D 60480 CDS YP_733694.1 113969901 4252137 1840909..1841547 1 NC_008321.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1841547 4252137 Shewmr4_1559 Shewanella sp. MR-4 pyridoxamine 5'-phosphate oxidase YP_733694.1 1840909 D 60480 CDS YP_733695.1 113969902 4252138 1841568..1842020 1 NC_008321.1 PFAM: protein of unknown function DUF188; KEGG: son:SO2894 YaiI/YqxD family protein; hypothetical protein 1842020 4252138 Shewmr4_1560 Shewanella sp. MR-4 hypothetical protein YP_733695.1 1841568 D 60480 CDS YP_733696.1 113969903 4252139 1842173..1842748 1 NC_008321.1 PFAM: YceI family protein; KEGG: son:SO2893 hypothetical protein; YceI family protein 1842748 4252139 Shewmr4_1561 Shewanella sp. MR-4 YceI family protein YP_733696.1 1842173 D 60480 CDS YP_733697.1 113969904 4252140 1842909..1843265 1 NC_008321.1 KEGG: son:SO2891 hypothetical protein; hypothetical protein 1843265 4252140 Shewmr4_1562 Shewanella sp. MR-4 hypothetical protein YP_733697.1 1842909 D 60480 CDS YP_733698.1 113969905 4252141 1843722..1844105 1 NC_008321.1 KEGG: son:SO2890 hypothetical protein; hypothetical protein 1844105 4252141 Shewmr4_1563 Shewanella sp. MR-4 hypothetical protein YP_733698.1 1843722 D 60480 CDS YP_733699.1 113969906 4252142 1844295..1845260 1 NC_008321.1 PFAM: protein of unknown function DUF785; KEGG: sdn:Sden_2273 protein of unknown function DUF785; hypothetical protein 1845260 4252142 Shewmr4_1564 Shewanella sp. MR-4 hypothetical protein YP_733699.1 1844295 D 60480 CDS YP_733700.1 113969907 4252143 complement(1845297..1847915) 1 NC_008321.1 KEGG: son:SO2889 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 1847915 4252143 Shewmr4_1565 Shewanella sp. MR-4 multi-sensor signal transduction histidine kinase YP_733700.1 1845297 R 60480 CDS YP_733701.1 113969908 4252144 complement(1848073..1848600) 1 NC_008321.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1848600 4252144 Shewmr4_1566 Shewanella sp. MR-4 disulfide bond formation protein B YP_733701.1 1848073 R 60480 CDS YP_733702.1 113969909 4252145 complement(1848696..1850297) 1 NC_008321.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1850297 nhaB 4252145 nhaB Shewanella sp. MR-4 sodium/proton antiporter YP_733702.1 1848696 R 60480 CDS YP_733703.1 113969910 4252146 1850601..1851326 1 NC_008321.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 1851326 4252146 Shewmr4_1568 Shewanella sp. MR-4 fatty acid metabolism regulator YP_733703.1 1850601 D 60480 CDS YP_733704.1 113969911 4252147 complement(1851402..1852928) 1 NC_008321.1 PFAM: SpoVR family protein; KEGG: son:SO2884 hypothetical protein; SpoVR family protein 1852928 4252147 Shewmr4_1569 Shewanella sp. MR-4 SpoVR family protein YP_733704.1 1851402 R 60480 CDS YP_733705.1 113969912 4252148 complement(1852938..1854212) 1 NC_008321.1 PFAM: protein of unknown function DUF444; KEGG: son:SO2883 hypothetical protein; hypothetical protein 1854212 4252148 Shewmr4_1570 Shewanella sp. MR-4 hypothetical protein YP_733705.1 1852938 R 60480 CDS YP_733706.1 113969913 4252149 complement(1856459..1857043) 1 NC_008321.1 PFAM: manganese and iron superoxide dismutase; KEGG: son:SO2881 superoxide dismutase, Fe; superoxide dismutase 1857043 4252149 Shewmr4_1572 Shewanella sp. MR-4 superoxide dismutase YP_733706.1 1856459 R 60480 CDS YP_733707.1 113969914 4252150 1857270..1857602 1 NC_008321.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: son:SO2880 glutaredoxin domain protein; glutaredoxin-like protein 1857602 4252150 Shewmr4_1573 Shewanella sp. MR-4 glutaredoxin-like protein YP_733707.1 1857270 D 60480 CDS YP_733708.1 113969915 4252151 complement(1857732..1858970) 1 NC_008321.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: son:SO2879 uracil permease; uracil-xanthine permease 1858970 4252151 Shewmr4_1574 Shewanella sp. MR-4 uracil-xanthine permease YP_733708.1 1857732 R 60480 CDS YP_733709.1 113969916 4252152 1859186..1860268 1 NC_008321.1 KEGG: son:SO2878 hypothetical protein; hypothetical protein 1860268 4252152 Shewmr4_1575 Shewanella sp. MR-4 hypothetical protein YP_733709.1 1859186 D 60480 CDS YP_733710.1 113969917 4252153 1860348..1861058 1 NC_008321.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1861058 4252153 Shewmr4_1576 Shewanella sp. MR-4 DNA replication initiation factor YP_733710.1 1860348 D 60480 CDS YP_733711.1 113969918 4252154 complement(1861491..1862753) 1 NC_008321.1 KEGG: son:SO1942 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 1862753 4252154 Shewmr4_1577 Shewanella sp. MR-4 metal dependent phosphohydrolase YP_733711.1 1861491 R 60480 CDS YP_733712.1 113969919 4252155 1862870..1863565 1 NC_008321.1 SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO1944 hypothetical protein; prolyl 4-hydroxylase subunit alpha 1863565 4252155 Shewmr4_1578 Shewanella sp. MR-4 prolyl 4-hydroxylase subunit alpha YP_733712.1 1862870 D 60480 CDS YP_733713.1 113969920 4252156 complement(1863583..1864932) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1945 sensor protein PhoQ; periplasmic sensor signal transduction histidine kinase 1864932 4252156 Shewmr4_1579 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_733713.1 1863583 R 60480 CDS YP_733714.1 113969921 4252157 complement(1864923..1865606) 1 NC_008321.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1946 transcriptional regulatory protein PhoP; two component transcriptional regulator 1865606 4252157 Shewmr4_1580 Shewanella sp. MR-4 two component transcriptional regulator YP_733714.1 1864923 R 60480 CDS YP_733715.1 113969922 4252158 complement(1865772..1866119) 1 NC_008321.1 KEGG: son:SO1947 hypothetical protein; hypothetical protein 1866119 4252158 Shewmr4_1581 Shewanella sp. MR-4 hypothetical protein YP_733715.1 1865772 R 60480 CDS YP_733716.1 113969923 4252159 complement(1866277..1867590) 1 NC_008321.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO1948 sodium:dicarboxylate symporter family protein; sodium:dicarboxylate symporter 1867590 4252159 Shewmr4_1582 Shewanella sp. MR-4 sodium:dicarboxylate symporter YP_733716.1 1866277 R 60480 CDS YP_733717.1 113969924 4252160 1867810..1871484 1 NC_008321.1 PFAM: Ig domain protein, group 1 domain protein; KEGG: son:SO1949 invasin domain protein; Ig domain-containing protein 1871484 4252160 Shewmr4_1583 Shewanella sp. MR-4 Ig domain-containing protein YP_733717.1 1867810 D 60480 CDS YP_733718.1 113969925 4252161 complement(1871565..1872899) 1 NC_008321.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 1872899 4252161 Shewmr4_1584 Shewanella sp. MR-4 succinylarginine dihydrolase YP_733718.1 1871565 R 60480 CDS YP_733719.1 113969926 4252162 1873183..1875867 1 NC_008321.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1875867 4252162 Shewmr4_1585 Shewanella sp. MR-4 DNA topoisomerase I YP_733719.1 1873183 D 60480 CDS YP_733720.1 113969927 4252163 complement(1876085..1876864) 1 NC_008321.1 KEGG: son:SO2650 hypothetical protein; hypothetical protein 1876864 4252163 Shewmr4_1586 Shewanella sp. MR-4 hypothetical protein YP_733720.1 1876085 R 60480 CDS YP_733721.1 113969928 4252164 1877092..1878066 1 NC_008321.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1878066 cysB 4252164 cysB Shewanella sp. MR-4 transcriptional regulator CysB YP_733721.1 1877092 D 60480 CDS YP_733722.1 113969929 4252165 complement(1878147..1878809) 1 NC_008321.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO2648 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 1878809 4252165 Shewmr4_1588 Shewanella sp. MR-4 two component LuxR family transcriptional regulator YP_733722.1 1878147 R 60480 CDS YP_733723.1 113969930 4252166 complement(1879030..1879461) 1 NC_008321.1 PFAM: thioesterase superfamily protein; KEGG: son:SO2647 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 1879461 4252166 Shewmr4_1589 Shewanella sp. MR-4 thioesterase superfamily protein YP_733723.1 1879030 R 60480 CDS YP_733724.1 113969931 4252167 complement(1879612..1880676) 1 NC_008321.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 1880676 4252167 Shewmr4_1590 Shewanella sp. MR-4 phospho-2-dehydro-3-deoxyheptonate aldolase YP_733724.1 1879612 R 60480 CDS YP_733725.1 113969932 4252168 complement(1880858..1881670) 1 NC_008321.1 PFAM: protein of unknown function DUF299; KEGG: son:SO2645 hypothetical protein; hypothetical protein 1881670 4252168 Shewmr4_1591 Shewanella sp. MR-4 hypothetical protein YP_733725.1 1880858 R 60480 CDS YP_733726.1 113969933 4252169 1881795..1884164 1 NC_008321.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1884164 4252169 Shewmr4_1592 Shewanella sp. MR-4 phosphoenolpyruvate synthase YP_733726.1 1881795 D 60480 CDS YP_733727.1 113969934 4252170 1884264..1887305 1 NC_008321.1 PFAM: FAD linked oxidase domain protein; KEGG: son:SO2643 oxidoreductase, FAD-binding, putative; FAD linked oxidase domain-containing protein 1887305 4252170 Shewmr4_1593 Shewanella sp. MR-4 FAD linked oxidase domain-containing protein YP_733727.1 1884264 D 60480 CDS YP_733728.1 113969935 4252171 1887400..1887891 1 NC_008321.1 PFAM: protein of unknown function DUF1285; KEGG: son:SO2642 hypothetical protein; hypothetical protein 1887891 4252171 Shewmr4_1594 Shewanella sp. MR-4 hypothetical protein YP_733728.1 1887400 D 60480 CDS YP_733729.1 113969936 4252172 1888030..1888461 1 NC_008321.1 PFAM: regulatory protein, MarR; KEGG: son:SO2640 transcriptional regulator, MarR family; MarR family transcriptional regulator 1888461 4252172 Shewmr4_1595 Shewanella sp. MR-4 MarR family transcriptional regulator YP_733729.1 1888030 D 60480 CDS YP_733730.1 113969937 4252173 1888747..1892535 1 NC_008321.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: sco:SCO0432 probable secreted peptidase; peptidase S8/S53 subtilisin kexin sedolisin 1892535 4252173 Shewmr4_1596 Shewanella sp. MR-4 peptidase S8/S53 subtilisin kexin sedolisin YP_733730.1 1888747 D 60480 CDS YP_733731.1 113969938 4252174 complement(1892598..1892945) 1 NC_008321.1 KEGG: son:SO2639 hypothetical protein; hypothetical protein 1892945 4252174 Shewmr4_1597 Shewanella sp. MR-4 hypothetical protein YP_733731.1 1892598 R 60480 CDS YP_733732.1 113969939 4252175 complement(1893140..1894174) 1 NC_008321.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: son:SO2638 leucine dehydrogenase; leucine dehydrogenase 1894174 4252175 Shewmr4_1598 Shewanella sp. MR-4 leucine dehydrogenase YP_733732.1 1893140 R 60480 CDS YP_733733.1 113969940 4252176 1894454..1894912 1 NC_008321.1 KEGG: son:SO2637 hypothetical protein; hypothetical protein 1894912 4252176 Shewmr4_1599 Shewanella sp. MR-4 hypothetical protein YP_733733.1 1894454 D 60480 CDS YP_733734.1 113969941 4252177 complement(1895009..1896148) 1 NC_008321.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: son:SO2636 hypothetical protein; cupin 4 family protein 1896148 4252177 Shewmr4_1600 Shewanella sp. MR-4 cupin 4 family protein YP_733734.1 1895009 R 60480 CDS YP_733735.1 113969942 4252178 complement(1896271..1897641) 1 NC_008321.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1897641 4252178 Shewmr4_1601 Shewanella sp. MR-4 adenylosuccinate lyase YP_733735.1 1896271 R 60480 CDS YP_733736.1 113969943 4252179 complement(1897671..1898288) 1 NC_008321.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 1898288 4252179 Shewmr4_1602 Shewanella sp. MR-4 hypothetical protein YP_733736.1 1897671 R 60480 CDS YP_733737.1 113969944 4252180 complement(1898292..1899410) 1 NC_008321.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1899410 mnmA 4252180 mnmA Shewanella sp. MR-4 tRNA-specific 2-thiouridylase MnmA YP_733737.1 1898292 R 60480 CDS YP_733738.1 113969945 4252181 complement(1899631..1900122) 1 NC_008321.1 PFAM: NUDIX hydrolase; KEGG: son:SO2631 MutT/nudix family protein; NUDIX hydrolase 1900122 4252181 Shewmr4_1604 Shewanella sp. MR-4 NUDIX hydrolase YP_733738.1 1899631 R 60480 CDS YP_733739.1 113969946 4252182 complement(1900193..1900978) 1 NC_008321.1 KEGG: sdn:Sden_1830 pseudouridine synthase, Rsu; TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; ribosomal large subunit pseudouridine synthase E 1900978 4252182 Shewmr4_1605 Shewanella sp. MR-4 ribosomal large subunit pseudouridine synthase E YP_733739.1 1900193 R 60480 CDS YP_733740.1 113969947 4252183 1901329..1903554 1 NC_008321.1 KEGG: son:SO2629 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase, NADP-dependent 1903554 4252183 Shewmr4_1606 Shewanella sp. MR-4 isocitrate dehydrogenase, NADP-dependent YP_733740.1 1901329 D 60480 CDS YP_733741.1 113969948 4252184 1904027..1904341 1 NC_008321.1 PFAM: small multidrug resistance protein; KEGG: son:SO1901 sugE protein; small multidrug resistance protein 1904341 4252184 Shewmr4_1608 Shewanella sp. MR-4 small multidrug resistance protein YP_733741.1 1904027 D 60480 CDS YP_733742.1 113969949 4252185 1904570..1906096 1 NC_008321.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1906096 4252185 Shewmr4_1609 Shewanella sp. MR-4 6-phosphogluconate dehydrogenase YP_733742.1 1904570 D 60480 CDS YP_733743.1 113969950 4252186 1906641..1908764 1 NC_008321.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; KEGG: sdn:Sden_3045 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 1908764 4252186 Shewmr4_1610 Shewanella sp. MR-4 peptidase S8/S53 subtilisin kexin sedolisin YP_733743.1 1906641 D 60480 CDS YP_733744.1 113969951 4252187 1908775..1909233 1 NC_008321.1 KEGG: sdn:Sden_3044 hypothetical protein; hypothetical protein 1909233 4252187 Shewmr4_1611 Shewanella sp. MR-4 hypothetical protein YP_733744.1 1908775 D 60480 CDS YP_733745.1 113969952 4252188 1909514..1910224 1 NC_008321.1 KEGG: son:SO1903 hypothetical protein; hypothetical protein 1910224 4252188 Shewmr4_1612 Shewanella sp. MR-4 hypothetical protein YP_733745.1 1909514 D 60480 CDS YP_733746.1 113969953 4252189 1910380..1910697 1 NC_008321.1 KEGG: ilo:IL1490 hypothetical protein; hypothetical protein 1910697 4252189 Shewmr4_1613 Shewanella sp. MR-4 hypothetical protein YP_733746.1 1910380 D 60480 CDS YP_733747.1 113969954 4252190 complement(1910775..1911674) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1907 transcriptional regulator, LysR family; LysR family transcriptional regulator 1911674 4252190 Shewmr4_1614 Shewanella sp. MR-4 LysR family transcriptional regulator YP_733747.1 1910775 R 60480 CDS YP_733748.1 113969955 4252191 1911876..1912355 1 NC_008321.1 KEGG: son:SO1908 hypothetical protein; hypothetical protein 1912355 4252191 Shewmr4_1615 Shewanella sp. MR-4 hypothetical protein YP_733748.1 1911876 D 60480 CDS YP_733749.1 113969956 4252192 1912426..1913235 1 NC_008321.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: son:SO1909 hypothetical protein; extradiol ring-cleavage dioxygenase III subunit B 1913235 4252192 Shewmr4_1616 Shewanella sp. MR-4 extradiol ring-cleavage dioxygenase III subunit B YP_733749.1 1912426 D 60480 CDS YP_733750.1 113969957 4252193 complement(1913389..1914264) 1 NC_008321.1 TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: son:SO1910 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphtoate prenyltransferase 1914264 4252193 Shewmr4_1617 Shewanella sp. MR-4 1,4-dihydroxy-2-naphtoate prenyltransferase YP_733750.1 1913389 R 60480 CDS YP_733751.1 113969958 4252194 1914589..1915542 1 NC_008321.1 PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: son:SO1911 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 1915542 4252194 Shewmr4_1618 Shewanella sp. MR-4 short-chain dehydrogenase/reductase SDR YP_733751.1 1914589 D 60480 CDS YP_733752.1 113969959 4252195 1915657..1916523 1 NC_008321.1 KEGG: son:SO1912 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 1916523 4252195 Shewmr4_1619 Shewanella sp. MR-4 acyl-CoA thioesterase II YP_733752.1 1915657 D 60480 CDS YP_733753.1 113969960 4252196 1916525..1916929 1 NC_008321.1 KEGG: son:SO1913 hypothetical protein; hypothetical protein 1916929 4252196 Shewmr4_1620 Shewanella sp. MR-4 hypothetical protein YP_733753.1 1916525 D 60480 CDS YP_733754.1 113969961 4252197 complement(1917014..1917895) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1916 transcriptional regulator, LysR family; LysR family transcriptional regulator 1917895 4252197 Shewmr4_1621 Shewanella sp. MR-4 LysR family transcriptional regulator YP_733754.1 1917014 R 60480 CDS YP_733755.1 113969962 4252198 1918076..1919386 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1917 multidrug resistance protein, putative; major facilitator transporter 1919386 4252198 Shewmr4_1622 Shewanella sp. MR-4 major facilitator transporter YP_733755.1 1918076 D 60480 CDS YP_733756.1 113969963 4252199 1919763..1921325 1 NC_008321.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: son:SO1918 MATE efflux family protein; MATE efflux family protein 1921325 4252199 Shewmr4_1623 Shewanella sp. MR-4 MATE efflux family protein YP_733756.1 1919763 D 60480 CDS YP_733757.1 113969964 4252200 complement(1921533..1921736) 1 NC_008321.1 KEGG: son:SO1921 hypothetical protein; hypothetical protein 1921736 4252200 Shewmr4_1624 Shewanella sp. MR-4 hypothetical protein YP_733757.1 1921533 R 60480 CDS YP_733758.1 113969965 4252201 1922044..1922355 1 NC_008321.1 PFAM: Uncharacterized conserved protein UCP029143; KEGG: son:SO1922 hypothetical protein; hypothetical protein 1922355 4252201 Shewmr4_1625 Shewanella sp. MR-4 hypothetical protein YP_733758.1 1922044 D 60480 CDS YP_733759.1 113969966 4252202 1922383..1923477 1 NC_008321.1 hypothetical protein 1923477 4252202 Shewmr4_1626 Shewanella sp. MR-4 hypothetical protein YP_733759.1 1922383 D 60480 CDS YP_733760.1 113969967 4252203 complement(1923526..1926582) 1 NC_008321.1 PFAM: acriflavin resistance protein; KEGG: son:SO1923 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 1926582 4252203 Shewmr4_1627 Shewanella sp. MR-4 acriflavin resistance protein YP_733760.1 1923526 R 60480 CDS YP_733761.1 113969968 4252204 complement(1926579..1929842) 1 NC_008321.1 PFAM: acriflavin resistance protein; KEGG: son:SO1924 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 1929842 4252204 Shewmr4_1628 Shewanella sp. MR-4 acriflavin resistance protein YP_733761.1 1926579 R 60480 CDS YP_733762.1 113969969 4252205 complement(1929855..1930931) 1 NC_008321.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1925 HlyD family secretion protein; RND family efflux transporter MFP subunit 1930931 4252205 Shewmr4_1629 Shewanella sp. MR-4 RND family efflux transporter MFP subunit YP_733762.1 1929855 R 60480 CDS YP_733763.1 113969970 4252206 complement(1931216..1932502) 1 NC_008321.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 1932502 gltA 4252206 gltA Shewanella sp. MR-4 type II citrate synthase YP_733763.1 1931216 R 60480 CDS YP_733764.1 113969971 4252207 1932919..1933314 1 NC_008321.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: son:SO1927 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase subunit C 1933314 4252207 Shewmr4_1631 Shewanella sp. MR-4 succinate dehydrogenase subunit C YP_733764.1 1932919 D 60480 CDS YP_733765.1 113969972 4252208 1933308..1933655 1 NC_008321.1 KEGG: son:SO1927.1 hypothetical succinate dehydrogenase, hydrophobic subunit; succinate dehydrogenase subunit D 1933655 4252208 Shewmr4_1632 Shewanella sp. MR-4 succinate dehydrogenase subunit D YP_733765.1 1933308 D 60480 CDS YP_733766.1 113969973 4252209 1933656..1935422 1 NC_008321.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1935422 sdhA 4252209 sdhA Shewanella sp. MR-4 succinate dehydrogenase flavoprotein subunit YP_733766.1 1933656 D 60480 CDS YP_733767.1 113969974 4252210 1935434..1936141 1 NC_008321.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1936141 sdhB 4252210 sdhB Shewanella sp. MR-4 succinate dehydrogenase iron-sulfur subunit YP_733767.1 1935434 D 60480 CDS YP_733768.1 113969975 4252211 1936356..1939175 1 NC_008321.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1939175 sucA 4252211 sucA Shewanella sp. MR-4 2-oxoglutarate dehydrogenase E1 component YP_733768.1 1936356 D 60480 CDS YP_733769.1 113969976 4252212 1939224..1940420 1 NC_008321.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: son:SO1931 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase); 2-oxoglutarate dehydrogenase E2 component 1940420 4252212 Shewmr4_1636 Shewanella sp. MR-4 2-oxoglutarate dehydrogenase E2 component YP_733769.1 1939224 D 60480 CDS YP_733770.1 113969977 4252213 1940540..1941706 1 NC_008321.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1941706 sucC 4252213 sucC Shewanella sp. MR-4 succinyl-CoA synthetase subunit beta YP_733770.1 1940540 D 60480 CDS YP_733771.1 113969978 4252214 1941706..1942578 1 NC_008321.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: son:SO1933 succinyl-CoA synthetase alpha chain; succinyl-CoA synthetase (ADP-forming) subunit alpha 1942578 4252214 Shewmr4_1638 Shewanella sp. MR-4 succinyl-CoA synthetase (ADP-forming) subunit alpha YP_733771.1 1941706 D 60480 CDS YP_733772.1 113969979 4252215 1942960..1943367 1 NC_008321.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO1935 regulator of nucleoside diphosphate kinase; GreA/GreB family elongation factor 1943367 4252215 Shewmr4_1639 Shewanella sp. MR-4 GreA/GreB family elongation factor YP_733772.1 1942960 D 60480 CDS YP_733773.1 113969980 4252216 1943415..1943912 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1936 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 1943912 4252216 Shewmr4_1640 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_733773.1 1943415 D 60480 CDS YP_733774.1 113969981 4252217 complement(1944009..1944440) 1 NC_008321.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 1944440 fur 4252217 fur Shewanella sp. MR-4 ferric uptake regulator YP_733774.1 1944009 R 60480 CDS YP_733775.1 113969982 4252218 1944697..1945437 1 NC_008321.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1945437 4252218 Shewmr4_1642 Shewanella sp. MR-4 NAD-dependent deacetylase YP_733775.1 1944697 D 60480 CDS YP_733776.1 113969983 4252219 1945440..1945904 1 NC_008321.1 KEGG: son:SO1939 hypothetical protein; hypothetical protein 1945904 4252219 Shewmr4_1643 Shewanella sp. MR-4 hypothetical protein YP_733776.1 1945440 D 60480 CDS YP_733777.1 113969984 4252220 1946141..1946503 1 NC_008321.1 KEGG: son:SO1940 hypothetical protein; hypothetical protein 1946503 4252220 Shewmr4_1644 Shewanella sp. MR-4 hypothetical protein YP_733777.1 1946141 D 60480 CDS YP_733778.1 113969985 4252221 1946630..1947577 1 NC_008321.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein, CorA family protein; KEGG: son:SO1941 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 1947577 4252221 Shewmr4_1645 Shewanella sp. MR-4 magnesium and cobalt transport protein CorA YP_733778.1 1946630 D 60480 CDS YP_733779.1 113969986 4252222 complement(1947735..1947941) 1 NC_008321.1 KEGG: son:SO2628 stress response protein CspD; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding protein family protein 1947941 4252222 Shewmr4_1646 Shewanella sp. MR-4 cold-shock DNA-binding protein family protein YP_733779.1 1947735 R 60480 CDS YP_733780.1 113969987 4252223 1948135..1948443 1 NC_008321.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1948443 clpS 4252223 clpS Shewanella sp. MR-4 ATP-dependent Clp protease adaptor protein ClpS YP_733780.1 1948135 D 60480 CDS YP_733781.1 113969988 4252224 1948486..1950753 1 NC_008321.1 KEGG: son:SO2626 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease, ATP-binding subunit clpA 1950753 4252224 Shewmr4_1648 Shewanella sp. MR-4 ATP-dependent Clp protease, ATP-binding subunit clpA YP_733781.1 1948486 D 60480 CDS YP_733782.1 113969989 4252225 complement(1950859..1951077) 1 NC_008321.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1951077 infA 4252225 infA Shewanella sp. MR-4 translation initiation factor IF-1 YP_733782.1 1950859 R 60480 CDS YP_733783.1 113969990 4252226 complement(1951160..1951876) 1 NC_008321.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 1951876 4252226 Shewmr4_1650 Shewanella sp. MR-4 arginyl-tRNA-protein transferase YP_733783.1 1951160 R 60480 CDS YP_733784.1 113969991 4252227 complement(1951866..1952576) 1 NC_008321.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1952576 aat 4252227 aat Shewanella sp. MR-4 leucyl/phenylalanyl-tRNA--protein transferase YP_733784.1 1951866 R 60480 CDS YP_733785.1 113969992 4252228 1952631..1953101 1 NC_008321.1 PFAM: 17 kDa surface antigen; KEGG: son:SO2622 hypothetical protein; 17 kDa surface antigen 1953101 4252228 Shewmr4_1652 Shewanella sp. MR-4 17 kDa surface antigen YP_733785.1 1952631 D 60480 CDS YP_733786.1 113969993 4252229 1953162..1953914 1 NC_008321.1 PFAM: protein of unknown function DUF34; KEGG: son:SO2621 conserved hypothetical protein TIGR00486; hypothetical protein 1953914 4252229 Shewmr4_1653 Shewanella sp. MR-4 hypothetical protein YP_733786.1 1953162 D 60480 CDS YP_733787.1 113969994 4252230 complement(1953992..1954948) 1 NC_008321.1 PFAM: Auxin Efflux Carrier; KEGG: son:SO2620 hypothetical protein; auxin efflux carrier 1954948 4252230 Shewmr4_1654 Shewanella sp. MR-4 auxin efflux carrier YP_733787.1 1953992 R 60480 CDS YP_733788.1 113969995 4252231 complement(1955161..1957191) 1 NC_008321.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1957191 metG 4252231 metG Shewanella sp. MR-4 methionyl-tRNA synthetase YP_733788.1 1955161 R 60480 CDS YP_733789.1 113969996 4252232 1957352..1958467 1 NC_008321.1 KEGG: son:SO2618 ATP-binding protein, Mrp/Nbp35 family; ATP-binding Mrp/Nbp35 family protein 1958467 4252232 Shewmr4_1656 Shewanella sp. MR-4 ATP-binding Mrp/Nbp35 family protein YP_733789.1 1957352 D 60480 CDS YP_733790.1 113969997 4252233 1958479..1959117 1 NC_008321.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 1959117 4252233 Shewmr4_1657 Shewanella sp. MR-4 uridine kinase YP_733790.1 1958479 D 60480 CDS YP_733791.1 113969998 4252234 1959147..1959728 1 NC_008321.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1959728 dcd 4252234 dcd Shewanella sp. MR-4 deoxycytidine triphosphate deaminase YP_733791.1 1959147 D 60480 CDS YP_733792.1 113969999 4252235 1959734..1960543 1 NC_008321.1 PFAM: aminotransferase, class IV; KEGG: son:SO2615 4-amino-4-deoxychorismate lyase; aminodeoxychorismate lyase apoprotein 1960543 4252235 Shewmr4_1659 Shewanella sp. MR-4 aminodeoxychorismate lyase apoprotein YP_733792.1 1959734 D 60480 CDS YP_733793.1 113970000 4252236 1960540..1961550 1 NC_008321.1 PFAM: aminodeoxychorismate lyase; KEGG: son:SO2614 conserved hypothetical protein TIGR00247; aminodeoxychorismate lyase 1961550 4252236 Shewmr4_1660 Shewanella sp. MR-4 aminodeoxychorismate lyase YP_733793.1 1960540 D 60480 CDS YP_733794.1 113970001 4252237 1961547..1962176 1 NC_008321.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1962176 tmk 4252237 tmk Shewanella sp. MR-4 thymidylate kinase YP_733794.1 1961547 D 60480 CDS YP_733795.1 113970002 4252238 1962170..1963126 1 NC_008321.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: son:SO2612 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' 1963126 4252238 Shewmr4_1662 Shewanella sp. MR-4 DNA polymerase III subunit delta' YP_733795.1 1962170 D 60480 CDS YP_733796.1 113970003 4252239 1963133..1963459 1 NC_008321.1 KEGG: son:SO2611 type IV pilus biogenesis protein pilZ; type IV pilus biogenesis protein pilZ 1963459 4252239 Shewmr4_1663 Shewanella sp. MR-4 type IV pilus biogenesis protein pilZ YP_733796.1 1963133 D 60480 CDS YP_733797.1 113970004 4252240 1963806..1964606 1 NC_008321.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: son:SO2610 hydrolase, TatD family; TatD family hydrolase 1964606 4252240 Shewmr4_1664 Shewanella sp. MR-4 TatD family hydrolase YP_733797.1 1963806 D 60480 CDS YP_733798.1 113970005 4252241 complement(1964923..1966452) 1 NC_008321.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1966452 yebU 4252241 yebU Shewanella sp. MR-4 rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_733798.1 1964923 R 60480 CDS YP_733799.1 113970006 4252242 1966515..1967741 1 NC_008321.1 PFAM: nucleoside recognition domain protein; KEGG: son:SO2607 spore maturation protein A-related protein; nucleoside recognition domain-containing protein 1967741 4252242 Shewmr4_1666 Shewanella sp. MR-4 nucleoside recognition domain-containing protein YP_733799.1 1966515 D 60480 CDS YP_733800.1 113970007 4252243 complement(1967920..1970556) 1 NC_008321.1 PFAM: Mammalian cell entry related domain protein; KEGG: son:SO2606 PqiB family protein; hypothetical protein 1970556 4252243 Shewmr4_1667 Shewanella sp. MR-4 hypothetical protein YP_733800.1 1967920 R 60480 CDS YP_733801.1 113970008 4252244 complement(1970543..1971160) 1 NC_008321.1 PFAM: Paraquat-inducible protein A; KEGG: sdn:Sden_1717 paraquat-inducible protein A; paraquat-inducible protein A 1971160 4252244 Shewmr4_1668 Shewanella sp. MR-4 paraquat-inducible protein A YP_733801.1 1970543 R 60480 CDS YP_733802.1 113970009 4252245 complement(1971163..1971798) 1 NC_008321.1 PFAM: Paraquat-inducible protein A; KEGG: sdn:Sden_1718 paraquat-inducible protein A; paraquat-inducible protein A 1971798 4252245 Shewmr4_1669 Shewanella sp. MR-4 paraquat-inducible protein A YP_733802.1 1971163 R 60480 CDS YP_733803.1 113970010 4252246 1972004..1972303 1 NC_008321.1 PFAM: YebG family protein; KEGG: son:SO2604 hypothetical protein; YebG family protein 1972303 4252246 Shewmr4_1670 Shewanella sp. MR-4 YebG family protein YP_733803.1 1972004 D 60480 CDS YP_733804.1 113970011 4252247 1972319..1972777 1 NC_008321.1 PFAM: GAF domain protein; KEGG: son:SO2603 GAF domain-containing protein; putative GAF sensor protein 1972777 4252247 Shewmr4_1671 Shewanella sp. MR-4 putative GAF sensor protein YP_733804.1 1972319 D 60480 CDS YP_733805.1 113970012 4252248 1973053..1973697 1 NC_008321.1 affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 1973697 4252248 Shewmr4_1672 Shewanella sp. MR-4 putative solute/DNA competence effector YP_733805.1 1973053 D 60480 CDS YP_733806.1 113970013 4252249 1973726..1975777 1 NC_008321.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1975777 4252249 Shewmr4_1673 Shewanella sp. MR-4 carboxy-terminal protease YP_733806.1 1973726 D 60480 CDS YP_733807.1 113970014 4252250 1975861..1978410 1 NC_008321.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO2600 aminopeptidase N; aminopeptidase N 1978410 pepN 4252250 pepN Shewanella sp. MR-4 aminopeptidase N YP_733807.1 1975861 D 60480 CDS YP_733808.1 113970015 4252251 1978721..1978939 1 NC_008321.1 KEGG: son:SO2598 hypothetical protein; hypothetical protein 1978939 4252251 Shewmr4_1675 Shewanella sp. MR-4 hypothetical protein YP_733808.1 1978721 D 60480 CDS YP_733809.1 113970016 4252252 1979275..1981317 1 NC_008321.1 PFAM: protein of unknown function DUF1302; KEGG: son:SO2597 hypothetical protein; hypothetical protein 1981317 4252252 Shewmr4_1676 Shewanella sp. MR-4 hypothetical protein YP_733809.1 1979275 D 60480 CDS YP_733810.1 113970017 4252253 1981330..1982694 1 NC_008321.1 PFAM: protein of unknown function DUF1329; KEGG: son:SO2596 hypothetical protein; hypothetical protein 1982694 4252253 Shewmr4_1677 Shewanella sp. MR-4 hypothetical protein YP_733810.1 1981330 D 60480 CDS YP_733811.1 113970018 4252254 1982749..1983759 1 NC_008321.1 KEGG: son:SO2595 BNR repeat protein; BNR repeat-containing protein 1983759 4252254 Shewmr4_1678 Shewanella sp. MR-4 BNR repeat-containing protein YP_733811.1 1982749 D 60480 CDS YP_733812.1 113970019 4252255 1983791..1986106 1 NC_008321.1 KEGG: son:SO2594 hypothetical protein; hypothetical protein 1986106 4252255 Shewmr4_1679 Shewanella sp. MR-4 hypothetical protein YP_733812.1 1983791 D 60480 CDS YP_733813.1 113970020 4252256 1986372..1991216 1 NC_008321.1 PFAM: NAD-glutamate dehydrogenase; KEGG: son:SO2593 hypothetical protein; glutamate dehydrogenase (NAD) 1991216 4252256 Shewmr4_1680 Shewanella sp. MR-4 glutamate dehydrogenase (NAD) YP_733813.1 1986372 D 60480 CDS YP_733814.1 113970021 4252257 1991279..1992298 1 NC_008321.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1992298 4252257 Shewmr4_1681 Shewanella sp. MR-4 dihydroorotate dehydrogenase 2 YP_733814.1 1991279 D 60480 CDS YP_733815.1 113970022 4252258 1992499..1993032 1 NC_008321.1 PFAM: protein of unknown function DUF1379; KEGG: son:SO2591 hypothetical protein; hypothetical protein 1993032 4252258 Shewmr4_1682 Shewanella sp. MR-4 hypothetical protein YP_733815.1 1992499 D 60480 CDS YP_733816.1 113970023 4252259 complement(1993541..1996141) 1 NC_008321.1 PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: son:SO2136 aldehyde-alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1996141 4252259 Shewmr4_1683 Shewanella sp. MR-4 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_733816.1 1993541 R 60480 CDS YP_733817.1 113970024 4252260 1996459..1997091 1 NC_008321.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO2137 multiple antibiotic resistance protein; hypothetical protein 1997091 4252260 Shewmr4_1684 Shewanella sp. MR-4 hypothetical protein YP_733817.1 1996459 D 60480 CDS YP_733818.1 113970025 4252261 1997345..1999339 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: cps:CPS_1937 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1999339 4252261 Shewmr4_1685 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_733818.1 1997345 D 60480 CDS YP_733819.1 113970026 4252262 1999986..2001221 1 NC_008321.1 PFAM: phage integrase family protein; KEGG: vvy:VV2262 phage integrase; phage integrase family protein 2001221 4252262 Shewmr4_1686 Shewanella sp. MR-4 phage integrase family protein YP_733819.1 1999986 D 60480 CDS YP_733820.1 113970027 4252263 2002389..2003429 1 NC_008321.1 KEGG: son:SO1441 hypothetical protein; hypothetical protein 2003429 4252263 Shewmr4_1688 Shewanella sp. MR-4 hypothetical protein YP_733820.1 2002389 D 60480 CDS YP_733821.1 113970028 4252264 2003552..2003767 1 NC_008321.1 PFAM: Prophage CP4-57 regulatory; KEGG: ecj:JW2604 DNA-binding transcriptional activator; phage transcriptional regulator, AlpA 2003767 4252264 Shewmr4_1689 Shewanella sp. MR-4 phage transcriptional regulator, AlpA YP_733821.1 2003552 D 60480 CDS YP_733822.1 113970029 4252265 2003786..2005285 1 NC_008321.1 KEGG: son:SO1442 hypothetical protein; hypothetical protein 2005285 4252265 Shewmr4_1690 Shewanella sp. MR-4 hypothetical protein YP_733822.1 2003786 D 60480 CDS YP_733823.1 113970030 4252266 2005690..2006352 1 NC_008321.1 KEGG: son:SO1443 hypothetical protein; hypothetical protein 2006352 4252266 Shewmr4_1691 Shewanella sp. MR-4 hypothetical protein YP_733823.1 2005690 D 60480 CDS YP_733824.1 113970031 4252267 complement(2006525..2006809) 1 NC_008321.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: son:SO1445 transcriptional regulator, CopG family; CopG family transcriptional regulator 2006809 4252267 Shewmr4_1692 Shewanella sp. MR-4 CopG family transcriptional regulator YP_733824.1 2006525 R 60480 CDS YP_733825.1 113970032 4252268 complement(2007095..2007817) 1 NC_008321.1 KEGG: son:SO1447 retinol acyltransferase domain protein; retinol acyltransferase domain-containing protein 2007817 4252268 Shewmr4_1693 Shewanella sp. MR-4 retinol acyltransferase domain-containing protein YP_733825.1 2007095 R 60480 CDS YP_733826.1 113970033 4252269 complement(2007906..2008544) 1 NC_008321.1 PFAM: phage integrase family protein; KEGG: son:SO1448 site-specific recombinase, phage integrase family; phage integrase family protein 2008544 4252269 Shewmr4_1694 Shewanella sp. MR-4 phage integrase family protein YP_733826.1 2007906 R 60480 CDS YP_733827.1 113970034 4252270 complement(2008581..2008994) 1 NC_008321.1 KEGG: son:SO1450 hypothetical protein; hypothetical protein 2008994 4252270 Shewmr4_1695 Shewanella sp. MR-4 hypothetical protein YP_733827.1 2008581 R 60480 CDS YP_733828.1 113970035 4252271 complement(2009184..2009597) 1 NC_008321.1 KEGG: son:SO1451 hypothetical protein; hypothetical protein 2009597 4252271 Shewmr4_1696 Shewanella sp. MR-4 hypothetical protein YP_733828.1 2009184 R 60480 CDS YP_733829.1 113970036 4252272 complement(2009836..2010192) 1 NC_008321.1 PFAM: YagBYeeUYfjZ family protein; KEGG: son:SO1453 hypothetical protein; hypothetical protein 2010192 4252272 Shewmr4_1697 Shewanella sp. MR-4 hypothetical protein YP_733829.1 2009836 R 60480 CDS YP_733830.1 113970037 4252273 complement(2010335..2010697) 1 NC_008321.1 KEGG: son:SO1454 hypothetical protein; hypothetical protein 2010697 4252273 Shewmr4_1698 Shewanella sp. MR-4 hypothetical protein YP_733830.1 2010335 R 60480 CDS YP_733831.1 113970038 4252274 complement(2010738..2011232) 1 NC_008321.1 TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: vfi:VFA0522 DNA repair protein RadC; DNA repair protein RadC 2011232 4252274 Shewmr4_1699 Shewanella sp. MR-4 DNA repair protein RadC YP_733831.1 2010738 R 60480 CDS YP_733832.1 113970039 4252275 2011355..2011549 1 NC_008321.1 PFAM: Prophage CP4-57 regulatory; KEGG: ilo:IL0640 predicted transcriptional regulator; phage transcriptional regulator, AlpA 2011549 4252275 Shewmr4_1700 Shewanella sp. MR-4 phage transcriptional regulator, AlpA YP_733832.1 2011355 D 60480 CDS YP_733833.1 113970040 4252276 2011679..2013223 1 NC_008321.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_05030 sigma 54-dependent transcriptional activator; sigma-54 dependent trancsriptional regulator 2013223 4252276 Shewmr4_1701 Shewanella sp. MR-4 sigma-54 dependent trancsriptional regulator YP_733833.1 2011679 D 60480 CDS YP_733834.1 113970041 4252277 2013300..2014829 1 NC_008321.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: bth:BT0335 putative ATPase; ATPase 2014829 4252277 Shewmr4_1702 Shewanella sp. MR-4 ATPase YP_733834.1 2013300 D 60480 CDS YP_733835.1 113970042 4252278 2014822..2016405 1 NC_008321.1 SMART: von Willebrand factor, type A; KEGG: yps:YPTB0004 hypothetical protein; von Willebrand factor, type A 2016405 4252278 Shewmr4_1703 Shewanella sp. MR-4 von Willebrand factor, type A YP_733835.1 2014822 D 60480 CDS YP_733836.1 113970043 4252279 2016419..2016952 1 NC_008321.1 KEGG: noc:Noc_0407 hypothetical protein; hypothetical protein 2016952 4252279 Shewmr4_1704 Shewanella sp. MR-4 hypothetical protein YP_733836.1 2016419 D 60480 CDS YP_733837.1 113970044 4252280 2017257..2017937 1 NC_008321.1 hypothetical protein 2017937 4252280 Shewmr4_1705 Shewanella sp. MR-4 hypothetical protein YP_733837.1 2017257 D 60480 CDS YP_733838.1 113970045 4252281 2018034..2018801 1 NC_008321.1 KEGG: sde:Sde_2759 hypothetical protein; hypothetical protein 2018801 4252281 Shewmr4_1706 Shewanella sp. MR-4 hypothetical protein YP_733838.1 2018034 D 60480 CDS YP_733839.1 113970046 4252282 2018806..2019348 1 NC_008321.1 KEGG: mta:Moth_2243 hypothetical protein; hypothetical protein 2019348 4252282 Shewmr4_1707 Shewanella sp. MR-4 hypothetical protein YP_733839.1 2018806 D 60480 CDS YP_733840.1 113970047 4252283 2019364..2022837 1 NC_008321.1 KEGG: sde:Sde_2757 hypothetical protein; hypothetical protein 2022837 4252283 Shewmr4_1708 Shewanella sp. MR-4 hypothetical protein YP_733840.1 2019364 D 60480 CDS YP_733841.1 113970048 4252284 2022951..2026415 1 NC_008321.1 KEGG: sde:Sde_2756 hypothetical protein; hypothetical protein 2026415 4252284 Shewmr4_1709 Shewanella sp. MR-4 hypothetical protein YP_733841.1 2022951 D 60480 CDS YP_733842.1 113970049 4252285 2026421..2028109 1 NC_008321.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: eca:ECA3659 hypothetical protein; hypothetical protein 2028109 4252285 Shewmr4_1710 Shewanella sp. MR-4 hypothetical protein YP_733842.1 2026421 D 60480 CDS YP_733843.1 113970050 4252286 2028096..2030135 1 NC_008321.1 KEGG: sde:Sde_2753 hypothetical protein; hypothetical protein 2030135 4252286 Shewmr4_1711 Shewanella sp. MR-4 hypothetical protein YP_733843.1 2028096 D 60480 CDS YP_733844.1 113970051 4252287 2030145..2030861 1 NC_008321.1 PFAM: Zeta toxin family protein; KEGG: pha:PSHAa0327 hypothetical protein; zeta toxin family protein 2030861 4252287 Shewmr4_1712 Shewanella sp. MR-4 zeta toxin family protein YP_733844.1 2030145 D 60480 CDS YP_733845.1 113970052 4252288 2030873..2031034 1 NC_008321.1 hypothetical protein 2031034 4252288 Shewmr4_1713 Shewanella sp. MR-4 hypothetical protein YP_733845.1 2030873 D 60480 CDS YP_733846.1 113970053 4252289 complement(2031076..2032929) 1 NC_008321.1 hypothetical protein 2032929 4252289 Shewmr4_1714 Shewanella sp. MR-4 hypothetical protein YP_733846.1 2031076 R 60480 CDS YP_733847.1 113970054 4252290 complement(2032944..2034944) 1 NC_008321.1 hypothetical protein 2034944 4252290 Shewmr4_1715 Shewanella sp. MR-4 hypothetical protein YP_733847.1 2032944 R 60480 CDS YP_733848.1 113970055 4252291 2035554..2038751 1 NC_008321.1 KEGG: pcr:Pcryo_0920 putative ATP-binding protein; ATPase-like protein 2038751 4252291 Shewmr4_1716 Shewanella sp. MR-4 ATPase-like protein YP_733848.1 2035554 D 60480 CDS YP_733849.1 113970056 4252292 2038769..2039461 1 NC_008321.1 hypothetical protein 2039461 4252292 Shewmr4_1717 Shewanella sp. MR-4 hypothetical protein YP_733849.1 2038769 D 60480 CDS YP_733850.1 113970057 4252293 2039666..2040511 1 NC_008321.1 hypothetical protein 2040511 4252293 Shewmr4_1718 Shewanella sp. MR-4 hypothetical protein YP_733850.1 2039666 D 60480 CDS YP_733851.1 113970058 4252294 2040504..2041457 1 NC_008321.1 hypothetical protein 2041457 4252294 Shewmr4_1719 Shewanella sp. MR-4 hypothetical protein YP_733851.1 2040504 D 60480 CDS YP_733852.1 113970059 4252295 2041581..2044496 1 NC_008321.1 KEGG: dps:DP1989 hypothetical protein; hypothetical protein 2044496 4252295 Shewmr4_1720 Shewanella sp. MR-4 hypothetical protein YP_733852.1 2041581 D 60480 CDS YP_733853.1 113970060 4252296 2044607..2045251 1 NC_008321.1 KEGG: pcr:Pcryo_0917 hypothetical protein; hypothetical protein 2045251 4252296 Shewmr4_1721 Shewanella sp. MR-4 hypothetical protein YP_733853.1 2044607 D 60480 CDS YP_733854.1 113970061 4252297 2046005..2047732 1 NC_008321.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: vpa:VP0880 hypothetical protein; type 12 methyltransferase 2047732 4252297 Shewmr4_1722 Shewanella sp. MR-4 type 12 methyltransferase YP_733854.1 2046005 D 60480 CDS YP_733855.1 113970062 4252298 2048052..2048975 1 NC_008321.1 PFAM: transposase, IS4 family protein; KEGG: son:SO3296 ISSod12, transposase; IS4 family transposase 2048975 4252298 Shewmr4_1723 Shewanella sp. MR-4 IS4 family transposase YP_733855.1 2048052 D 60480 CDS YP_733856.1 113970063 4252299 complement(2050112..2051488) 1 NC_008321.1 KEGG: son:SO2248 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine ammonia-lyase 2051488 4252299 Shewmr4_1725 Shewanella sp. MR-4 L-serine ammonia-lyase YP_733856.1 2050112 R 60480 CDS YP_733857.1 113970064 4252300 2051873..2052901 1 NC_008321.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 2052901 4252300 Shewmr4_1726 Shewanella sp. MR-4 beta-hexosaminidase YP_733857.1 2051873 D 60480 CDS YP_733858.1 113970065 4252301 2052983..2053522 1 NC_008321.1 PFAM: protein of unknown function UPF0227; KEGG: son:SO2251 conserved hypothetical protein; hypothetical protein 2053522 4252301 Shewmr4_1727 Shewanella sp. MR-4 hypothetical protein YP_733858.1 2052983 D 60480 CDS YP_733859.1 113970066 4252302 2054107..2054379 1 NC_008321.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 2054379 4252302 Shewmr4_1728 Shewanella sp. MR-4 acylphosphatase YP_733859.1 2054107 D 60480 CDS YP_733860.1 113970067 4252303 complement(2054507..2055538) 1 NC_008321.1 KEGG: son:SO2254 hypothetical protein; hypothetical protein 2055538 4252303 Shewmr4_1729 Shewanella sp. MR-4 hypothetical protein YP_733860.1 2054507 R 60480 CDS YP_733861.1 113970068 4252304 complement(2055538..2059020) 1 NC_008321.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO2255 transcription-repair coupling factor; transcription-repair coupling factor 2059020 4252304 Shewmr4_1730 Shewanella sp. MR-4 transcription-repair coupling factor YP_733861.1 2055538 R 60480 CDS YP_733862.1 113970069 4252305 complement(2059107..2059724) 1 NC_008321.1 KEGG: son:SO2256 hypothetical protein; hypothetical protein 2059724 4252305 Shewmr4_1731 Shewanella sp. MR-4 hypothetical protein YP_733862.1 2059107 R 60480 CDS YP_733863.1 113970070 4252306 2059819..2061051 1 NC_008321.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: son:SO2257 lipoprotein releasing system transmembrane protein LolE; LolC/E family lipoprotein releasing system, transmembrane protein 2061051 4252306 Shewmr4_1732 Shewanella sp. MR-4 LolC/E family lipoprotein releasing system, transmembrane protein YP_733863.1 2059819 D 60480 CDS YP_733864.1 113970071 4252307 2061083..2061844 1 NC_008321.1 KEGG: son:SO2258 lipoprotein releasing system ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 2061844 4252307 Shewmr4_1733 Shewanella sp. MR-4 lipoprotein releasing system, ATP-binding protein YP_733864.1 2061083 D 60480 CDS YP_733865.1 113970072 4252308 2061841..2063091 1 NC_008321.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: son:SO2259 lipoprotein releasing system transmembrane protein LolC, putative; LolC/E family lipoprotein releasing system, transmembrane protein 2063091 4252308 Shewmr4_1734 Shewanella sp. MR-4 LolC/E family lipoprotein releasing system, transmembrane protein YP_733865.1 2061841 D 60480 CDS YP_733866.1 113970073 4252309 complement(2063220..2064023) 1 NC_008321.1 PFAM: inositol monophosphatase; KEGG: son:SO2260 extragenic suppressor protein SuhB; inositol-phosphate phosphatase 2064023 4252309 Shewmr4_1735 Shewanella sp. MR-4 inositol-phosphate phosphatase YP_733866.1 2063220 R 60480 CDS YP_733867.1 113970074 4252310 2064178..2064903 1 NC_008321.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO2261 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase 2064903 4252310 Shewmr4_1736 Shewanella sp. MR-4 RNA methyltransferase YP_733867.1 2064178 D 60480 CDS YP_733868.1 113970075 4252311 2064949..2065770 1 NC_008321.1 TIGRFAM: serine O-acetyltransferase; KEGG: son:SO2262 serine acetyltransferase; serine O-acetyltransferase 2065770 4252311 Shewmr4_1737 Shewanella sp. MR-4 serine O-acetyltransferase YP_733868.1 2064949 D 60480 CDS YP_733869.1 113970076 4252312 2066120..2066581 1 NC_008321.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: son:SO2263 Rrf2 family protein; BadM/Rrf2 family transcriptional regulator 2066581 4252312 Shewmr4_1738 Shewanella sp. MR-4 BadM/Rrf2 family transcriptional regulator YP_733869.1 2066120 D 60480 CDS YP_733870.1 113970077 4252313 2066660..2067874 1 NC_008321.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 2067874 4252313 Shewmr4_1739 Shewanella sp. MR-4 cysteine desulfurase YP_733870.1 2066660 D 60480 CDS YP_733871.1 113970078 4252314 2067912..2068295 1 NC_008321.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: son:SO2265 NifU family protein; scaffold protein 2068295 4252314 Shewmr4_1740 Shewanella sp. MR-4 scaffold protein YP_733871.1 2067912 D 60480 CDS YP_733872.1 113970079 4252315 2068310..2068633 1 NC_008321.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: son:SO2266 HesB/YadR/YfhF family protein; iron-sulfur cluster assembly protein IscA 2068633 4252315 Shewmr4_1741 Shewanella sp. MR-4 iron-sulfur cluster assembly protein IscA YP_733872.1 2068310 D 60480 CDS YP_733873.1 113970080 4252316 2068649..2069173 1 NC_008321.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 2069173 hscB 4252316 hscB Shewanella sp. MR-4 co-chaperone HscB YP_733873.1 2068649 D 60480 CDS YP_733874.1 113970081 4252317 2069241..2071103 1 NC_008321.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2071103 hscA 4252317 hscA Shewanella sp. MR-4 chaperone protein HscA YP_733874.1 2069241 D 60480 CDS YP_733875.1 113970082 4252318 2071112..2071447 1 NC_008321.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: son:SO2269 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S type, ISC system 2071447 4252318 Shewmr4_1744 Shewanella sp. MR-4 ferredoxin, 2Fe-2S type, ISC system YP_733875.1 2071112 D 60480 CDS YP_733876.1 113970083 4252319 2071603..2072502 1 NC_008321.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO2270 ribosomal protein S6 modification protein; SSU ribosomal protein S6P modification protein 2072502 4252319 Shewmr4_1745 Shewanella sp. MR-4 SSU ribosomal protein S6P modification protein YP_733876.1 2071603 D 60480 CDS YP_733877.1 113970084 4252320 2072571..2072768 1 NC_008321.1 PFAM: protein of unknown function DUF528; KEGG: son:SO2271 hypothetical protein; hypothetical protein 2072768 4252320 Shewmr4_1746 Shewanella sp. MR-4 hypothetical protein YP_733877.1 2072571 D 60480 CDS YP_733878.1 113970085 4252321 2073354..2073785 1 NC_008321.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2073785 ndk 4252321 ndk Shewanella sp. MR-4 nucleoside diphosphate kinase YP_733878.1 2073354 D 60480 CDS YP_733879.1 113970086 4252322 2074099..2074542 1 NC_008321.1 PFAM: heat shock protein Hsp20; KEGG: son:SO2277 16 kDa heat shock protein A; heat shock protein Hsp20 2074542 4252322 Shewmr4_1748 Shewanella sp. MR-4 heat shock protein Hsp20 YP_733879.1 2074099 D 60480 CDS YP_733880.1 113970087 4252323 complement(2074674..2075168) 1 NC_008321.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2075168 ilvH 4252323 ilvH Shewanella sp. MR-4 acetolactate synthase 3 regulatory subunit YP_733880.1 2074674 R 60480 CDS YP_733881.1 113970088 4252324 complement(2075168..2076886) 1 NC_008321.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: son:SO2279 acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit 2076886 4252324 Shewmr4_1750 Shewanella sp. MR-4 acetolactate synthase 3 catalytic subunit YP_733881.1 2075168 R 60480 CDS YP_733882.1 113970089 4252325 complement(2077337..2078560) 1 NC_008321.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2280 bicyclomycin resistance protein; Bcr/CflA subfamily drug resistance transporter 2078560 4252325 Shewmr4_1751 Shewanella sp. MR-4 Bcr/CflA subfamily drug resistance transporter YP_733882.1 2077337 R 60480 CDS YP_733883.1 113970090 4252326 2079053..2080927 1 NC_008321.1 KEGG: son:SO2281 alkaline phosphatase; alkaline phosphatase 2080927 4252326 Shewmr4_1752 Shewanella sp. MR-4 alkaline phosphatase YP_733883.1 2079053 D 60480 CDS YP_733884.1 113970091 4252327 complement(2081060..2082418) 1 NC_008321.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: son:SO2282 transcriptional regulator, GntR family; GntR family transcriptional regulator 2082418 4252327 Shewmr4_1753 Shewanella sp. MR-4 GntR family transcriptional regulator YP_733884.1 2081060 R 60480 CDS YP_733885.1 113970092 4252328 2082510..2083136 1 NC_008321.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO2285 hypothetical protein; lysine exporter protein LysE/YggA 2083136 4252328 Shewmr4_1754 Shewanella sp. MR-4 lysine exporter protein LysE/YggA YP_733885.1 2082510 D 60480 CDS YP_733886.1 113970093 4252329 2083330..2085087 1 NC_008321.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO2286 sulfate permease family protein; sulfate transporter 2085087 4252329 Shewmr4_1755 Shewanella sp. MR-4 sulfate transporter YP_733886.1 2083330 D 60480 CDS YP_733887.1 113970094 4252330 complement(2085137..2085940) 1 NC_008321.1 PFAM: Integrase, catalytic region; KEGG: pcr:Pcryo_0715 Integrase, catalytic region; integrase catalytic subunit 2085940 4252330 Shewmr4_1756 Shewanella sp. MR-4 integrase catalytic subunit YP_733887.1 2085137 R 60480 CDS YP_733888.1 113970095 4252331 complement(2085970..2086365) 1 NC_008321.1 KEGG: dde:Dde_2987 transposase; transposase 2086365 4252331 Shewmr4_1757 Shewanella sp. MR-4 transposase YP_733888.1 2085970 R 60480 CDS YP_733889.1 113970096 4252332 complement(2086506..2086730) 1 NC_008321.1 KEGG: sdn:Sden_2314 hypothetical protein; hypothetical protein 2086730 4252332 Shewmr4_1758 Shewanella sp. MR-4 hypothetical protein YP_733889.1 2086506 R 60480 CDS YP_733890.1 113970097 4252333 complement(2086852..2087523) 1 NC_008321.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO2288 glutathione-S-transferase domain protein; glutathione S-transferase domain-containing protein 2087523 4252333 Shewmr4_1759 Shewanella sp. MR-4 glutathione S-transferase domain-containing protein YP_733890.1 2086852 R 60480 CDS YP_733891.1 113970098 4252334 2087794..2088786 1 NC_008321.1 PFAM: Rhodanese domain protein; KEGG: son:SO2290 rhodanese domain protein; hypothetical protein 2088786 4252334 Shewmr4_1760 Shewanella sp. MR-4 hypothetical protein YP_733891.1 2087794 D 60480 CDS YP_733892.1 113970099 4252335 2088981..2089445 1 NC_008321.1 KEGG: son:SO2291 hypothetical protein; hypothetical protein 2089445 4252335 Shewmr4_1761 Shewanella sp. MR-4 hypothetical protein YP_733892.1 2088981 D 60480 CDS YP_733893.1 113970100 4252336 2089533..2089895 1 NC_008321.1 KEGG: son:SO2234 hypothetical protein; hypothetical protein 2089895 4252336 Shewmr4_1762 Shewanella sp. MR-4 hypothetical protein YP_733893.1 2089533 D 60480 CDS YP_733894.1 113970101 4252337 complement(2090044..2090553) 1 NC_008321.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit 2090553 4252337 Shewmr4_1763 Shewanella sp. MR-4 PTS system glucose-specific transporter subunit YP_733894.1 2090044 R 60480 CDS YP_733895.1 113970102 4252338 complement(2090626..2092329) 1 NC_008321.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: son:SO2237 phosphotransferase system, enzyme I; phosphoenolpyruvate--protein phosphotransferase 2092329 4252338 Shewmr4_1764 Shewanella sp. MR-4 phosphoenolpyruvate--protein phosphotransferase YP_733895.1 2090626 R 60480 CDS YP_733896.1 113970103 4252339 complement(2092362..2092619) 1 NC_008321.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: son:SO2238 phosphocarrier protein HPr; HPr family phosphocarrier protein 2092619 4252339 Shewmr4_1765 Shewanella sp. MR-4 HPr family phosphocarrier protein YP_733896.1 2092362 R 60480 CDS YP_733897.1 113970104 4252340 complement(2092643..2093038) 1 NC_008321.1 KEGG: son:SO2239 hypothetical protein; hypothetical protein 2093038 4252340 Shewmr4_1766 Shewanella sp. MR-4 hypothetical protein YP_733897.1 2092643 R 60480 CDS YP_733898.1 113970105 4252341 complement(2093210..2094847) 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: son:SO2240 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2094847 4252341 Shewmr4_1767 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_733898.1 2093210 R 60480 CDS YP_733899.1 113970106 4252342 2095195..2095923 1 NC_008321.1 KEGG: son:SO2241 hypothetical protein; hypothetical protein 2095923 4252342 Shewmr4_1768 Shewanella sp. MR-4 hypothetical protein YP_733899.1 2095195 D 60480 CDS YP_733900.1 113970107 4252343 2096145..2097185 1 NC_008321.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO2244 transcriptional regulator, LacI family; LacI family transcription regulator 2097185 4252343 Shewmr4_1769 Shewanella sp. MR-4 LacI family transcription regulator YP_733900.1 2096145 D 60480 CDS YP_733901.1 113970108 4252344 complement(2097298..2097987) 1 NC_008321.1 KEGG: son:SO2245 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2097987 4252344 Shewmr4_1770 Shewanella sp. MR-4 DNA polymerase III subunit epsilon YP_733901.1 2097298 R 60480 CDS YP_733902.1 113970109 4252345 complement(2098106..2098468) 1 NC_008321.1 KEGG: sdn:Sden_1373 methyltransferase type 12; hypothetical protein 2098468 4252345 Shewmr4_1771 Shewanella sp. MR-4 hypothetical protein YP_733902.1 2098106 R 60480 CDS YP_733903.1 113970110 4252346 complement(2098549..2098929) 1 NC_008321.1 KEGG: son:SO2146 hypothetical protein; hypothetical protein 2098929 4252346 Shewmr4_1772 Shewanella sp. MR-4 hypothetical protein YP_733903.1 2098549 R 60480 CDS YP_733904.1 113970111 4252347 complement(2098997..2101117) 1 NC_008321.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: son:SO2147 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 2101117 4252347 Shewmr4_1773 Shewanella sp. MR-4 exodeoxyribonuclease V subunit alpha YP_733904.1 2098997 R 60480 CDS YP_733905.1 113970112 4252348 complement(2101114..2104938) 1 NC_008321.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: son:SO2148 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 2104938 4252348 Shewmr4_1774 Shewanella sp. MR-4 exodeoxyribonuclease V subunit beta YP_733905.1 2101114 R 60480 CDS YP_733906.1 113970113 4252349 complement(2104938..2108648) 1 NC_008321.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: son:SO2149 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 2108648 4252349 Shewmr4_1775 Shewanella sp. MR-4 exodeoxyribonuclease V subunit gamma YP_733906.1 2104938 R 60480 CDS YP_733907.1 113970114 4252350 complement(2108758..2110905) 1 NC_008321.1 PFAM: transglutaminase domain protein; KEGG: son:SO2150 transglutaminase family protein; transglutaminase domain-containing protein 2110905 4252350 Shewmr4_1776 Shewanella sp. MR-4 transglutaminase domain-containing protein YP_733907.1 2108758 R 60480 CDS YP_733908.1 113970115 4252351 complement(2110902..2111987) 1 NC_008321.1 PFAM: protein of unknown function DUF58; KEGG: son:SO2151 hypothetical protein; hypothetical protein 2111987 4252351 Shewmr4_1777 Shewanella sp. MR-4 hypothetical protein YP_733908.1 2110902 R 60480 CDS YP_733909.1 113970116 4252352 complement(2112038..2112949) 1 NC_008321.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: son:SO2153 MoxR protein; ATPase 2112949 4252352 Shewmr4_1778 Shewanella sp. MR-4 ATPase YP_733909.1 2112038 R 60480 CDS YP_733910.1 113970117 4252353 2113374..2114390 1 NC_008321.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3445 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 2114390 4252353 Shewmr4_1779 Shewanella sp. MR-4 transposase IS116/IS110/IS902 family protein YP_733910.1 2113374 D 60480 CDS YP_733911.1 113970118 4252354 complement(2114613..2115536) 1 NC_008321.1 PFAM: transposase, IS4 family protein; KEGG: son:SO3296 ISSod12, transposase; IS4 family transposase 2115536 4252354 Shewmr4_1780 Shewanella sp. MR-4 IS4 family transposase YP_733911.1 2114613 R 60480 CDS YP_733912.1 113970119 4252355 complement(2115588..2115935) 1 NC_008321.1 KEGG: sdn:Sden_3235 DNA-directed DNA polymerase; DNA repair nucleotidyltransferase/DNA polymerase-like protein 2115935 4252355 Shewmr4_1781 Shewanella sp. MR-4 DNA repair nucleotidyltransferase/DNA polymerase-like protein YP_733912.1 2115588 R 60480 CDS YP_733913.1 113970120 4252356 complement(2115923..2116747) 1 NC_008321.1 PFAM: peptidase S24, S26A and S26B; KEGG: son:SOA0013 umuD protein; putative prophage repressor 2116747 4252356 Shewmr4_1782 Shewanella sp. MR-4 putative prophage repressor YP_733913.1 2115923 R 60480 CDS YP_733914.1 113970121 4252357 complement(2116842..2117486) 1 NC_008321.1 PFAM: protein of unknown function DUF938; KEGG: son:SO2050 hypothetical protein; hypothetical protein 2117486 4252357 Shewmr4_1783 Shewanella sp. MR-4 hypothetical protein YP_733914.1 2116842 R 60480 CDS YP_733915.1 113970122 4252358 2117757..2119046 1 NC_008321.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO2052 hypothetical oxidoreductase; FAD dependent oxidoreductase 2119046 4252358 Shewmr4_1784 Shewanella sp. MR-4 FAD dependent oxidoreductase YP_733915.1 2117757 D 60480 CDS YP_733916.1 113970123 4252359 complement(2119131..2120012) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2053 transcriptional regulator, LysR family; LysR family transcriptional regulator 2120012 4252359 Shewmr4_1785 Shewanella sp. MR-4 LysR family transcriptional regulator YP_733916.1 2119131 R 60480 CDS YP_733917.1 113970124 4252360 2120209..2121348 1 NC_008321.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO2054 alcohol dehydrogenase class III; alcohol dehydrogenase 2121348 4252360 Shewmr4_1786 Shewanella sp. MR-4 alcohol dehydrogenase YP_733917.1 2120209 D 60480 CDS YP_733918.1 113970125 4252361 2121476..2122315 1 NC_008321.1 PFAM: putative esterase; KEGG: son:SO2055 esterase, putative; carboxylesterase 2122315 4252361 Shewmr4_1787 Shewanella sp. MR-4 carboxylesterase YP_733918.1 2121476 D 60480 CDS YP_733919.1 113970126 4252362 2122605..2123285 1 NC_008321.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: hch:HCH_03035 secreted trypsin-like serine protease; peptidase S1 and S6, chymotrypsin/Hap 2123285 4252362 Shewmr4_1788 Shewanella sp. MR-4 peptidase S1 and S6, chymotrypsin/Hap YP_733919.1 2122605 D 60480 CDS YP_733920.1 113970127 4252363 complement(2123446..2123796) 1 NC_008321.1 PFAM: Uncharacterized conserved protein UCP025560; KEGG: son:SO2062 hypothetical protein; hypothetical protein 2123796 4252363 Shewmr4_1789 Shewanella sp. MR-4 hypothetical protein YP_733920.1 2123446 R 60480 CDS YP_733921.1 113970128 4252364 complement(2123821..2124021) 1 NC_008321.1 KEGG: son:SO2063 hypothetical protein; hypothetical protein 2124021 4252364 Shewmr4_1790 Shewanella sp. MR-4 hypothetical protein YP_733921.1 2123821 R 60480 CDS YP_733922.1 113970129 4252365 complement(2124035..2127247) 1 NC_008321.1 KEGG: son:SO2064 hypothetical protein; hypothetical protein 2127247 4252365 Shewmr4_1791 Shewanella sp. MR-4 hypothetical protein YP_733922.1 2124035 R 60480 CDS YP_733923.1 113970130 4252366 complement(2127505..2128692) 1 NC_008321.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: son:SO2065 tyrosine-specific transport protein; aromatic amino acid transporter 2128692 4252366 Shewmr4_1792 Shewanella sp. MR-4 aromatic amino acid transporter YP_733923.1 2127505 R 60480 CDS YP_733924.1 113970131 4252367 complement(2129420..2130079) 1 NC_008321.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 2130079 4252367 Shewmr4_1793 Shewanella sp. MR-4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_733924.1 2129420 R 60480 CDS YP_733925.1 113970132 4252368 complement(2130124..2130897) 1 NC_008321.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2130897 4252368 Shewmr4_1794 Shewanella sp. MR-4 imidazole glycerol phosphate synthase subunit HisF YP_733925.1 2130124 R 60480 CDS YP_733926.1 113970133 4252369 complement(2130879..2131616) 1 NC_008321.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2131616 4252369 Shewmr4_1795 Shewanella sp. MR-4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_733926.1 2130879 R 60480 CDS YP_733927.1 113970134 4252370 complement(2131748..2132398) 1 NC_008321.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2132398 hisH 4252370 hisH Shewanella sp. MR-4 imidazole glycerol phosphate synthase subunit HisH YP_733927.1 2131748 R 60480 CDS YP_733928.1 113970135 4252371 complement(2132545..2133636) 1 NC_008321.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2133636 4252371 Shewmr4_1797 Shewanella sp. MR-4 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_733928.1 2132545 R 60480 CDS YP_733929.1 113970136 4252372 complement(2133719..2134909) 1 NC_008321.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2134909 4252372 Shewmr4_1798 Shewanella sp. MR-4 histidinol-phosphate aminotransferase YP_733929.1 2133719 R 60480 CDS YP_733930.1 113970137 4252373 complement(2134976..2136277) 1 NC_008321.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2136277 hisD 4252373 hisD Shewanella sp. MR-4 histidinol dehydrogenase YP_733930.1 2134976 R 60480 CDS YP_733931.1 113970138 4252374 complement(2136281..2137279) 1 NC_008321.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2137279 hisG 4252374 hisG Shewanella sp. MR-4 ATP phosphoribosyltransferase YP_733931.1 2136281 R 60480 CDS YP_733932.1 113970139 4252375 complement(2137844..2138671) 1 NC_008321.1 KEGG: son:SO2075 hypothetical protein; hypothetical protein 2138671 4252375 Shewmr4_1801 Shewanella sp. MR-4 hypothetical protein YP_733932.1 2137844 R 60480 CDS YP_733933.1 113970140 4252376 complement(2138737..2139063) 1 NC_008321.1 KEGG: son:SO2076 hypothetical protein; hypothetical protein 2139063 4252376 Shewmr4_1802 Shewanella sp. MR-4 hypothetical protein YP_733933.1 2138737 R 60480 CDS YP_733934.1 113970141 4252377 complement(2139118..2139570) 1 NC_008321.1 KEGG: son:SO2077 acyltransferase domain protein; acyltransferase domain-containing protein 2139570 4252377 Shewmr4_1803 Shewanella sp. MR-4 acyltransferase domain-containing protein YP_733934.1 2139118 R 60480 CDS YP_733935.1 113970142 4252378 complement(2139658..2139999) 1 NC_008321.1 KEGG: son:SO2079 hypothetical protein; hypothetical protein 2139999 4252378 Shewmr4_1804 Shewanella sp. MR-4 hypothetical protein YP_733935.1 2139658 R 60480 CDS YP_733936.1 113970143 4252379 2140302..2142281 1 NC_008321.1 SMART: helicase c2; KEGG: son:SO2081 ATP-dependent helicase, DinG family; helicase c2 2142281 4252379 Shewmr4_1805 Shewanella sp. MR-4 helicase c2 YP_733936.1 2140302 D 60480 CDS YP_733937.1 113970144 4252380 complement(2142356..2144305) 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ppr:PBPRB1825 hypothetical receptor; TonB-dependent receptor 2144305 4252380 Shewmr4_1806 Shewanella sp. MR-4 TonB-dependent receptor YP_733937.1 2142356 R 60480 CDS YP_733938.1 113970145 4252381 complement(2144663..2146180) 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO2083 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2146180 4252381 Shewmr4_1807 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_733938.1 2144663 R 60480 CDS YP_733939.1 113970146 4252382 2146615..2147634 1 NC_008321.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2147634 pheS 4252382 pheS Shewanella sp. MR-4 phenylalanyl-tRNA synthetase subunit alpha YP_733939.1 2146615 D 60480 CDS YP_733940.1 113970147 4252383 2147649..2150036 1 NC_008321.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2150036 pheT 4252383 pheT Shewanella sp. MR-4 phenylalanyl-tRNA synthetase subunit beta YP_733940.1 2147649 D 60480 CDS YP_733941.1 113970148 4252384 2150040..2150336 1 NC_008321.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2150336 ihfA 4252384 ihfA Shewanella sp. MR-4 integration host factor subunit alpha YP_733941.1 2150040 D 60480 CDS YP_733942.1 113970149 4252385 2150433..2151371 1 NC_008321.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2151371 4252385 Shewmr4_1811 Shewanella sp. MR-4 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_733942.1 2150433 D 60480 CDS YP_733943.1 113970150 4252386 complement(2151485..2151841) 1 NC_008321.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; KEGG: son:SO2089 hydrogenase expression/formation protein HypA; hydrogenase nickel insertion protein HypA 2151841 4252386 Shewmr4_1812 Shewanella sp. MR-4 hydrogenase nickel insertion protein HypA YP_733943.1 2151485 R 60480 CDS YP_733944.1 113970151 4252387 complement(2151841..2152860) 1 NC_008321.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: son:SO2090 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2152860 4252387 Shewmr4_1813 Shewanella sp. MR-4 hydrogenase expression/formation protein HypE YP_733944.1 2151841 R 60480 CDS YP_733945.1 113970152 4252388 complement(2152853..2153992) 1 NC_008321.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: son:SO2091 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD 2153992 4252388 Shewmr4_1814 Shewanella sp. MR-4 hydrogenase expression/formation protein HypD YP_733945.1 2152853 R 60480 CDS YP_733946.1 113970153 4252389 complement(2154052..2154297) 1 NC_008321.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: son:SO2092 hydrogenase assembly chaperone hypC/hupF; hydrogenase assembly chaperone hypC/hupF 2154297 4252389 Shewmr4_1815 Shewanella sp. MR-4 hydrogenase assembly chaperone hypC/hupF YP_733946.1 2154052 R 60480 CDS YP_733947.1 113970154 4252390 complement(2154297..2155058) 1 NC_008321.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: son:SO2093 hydrogenase accessory protein HypB; hydrogenase accessory protein HypB 2155058 4252390 Shewmr4_1816 Shewanella sp. MR-4 hydrogenase accessory protein HypB YP_733947.1 2154297 R 60480 CDS YP_733948.1 113970155 4252391 complement(2155296..2157806) 1 NC_008321.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain protein; zinc finger, HypF domain protein; KEGG: son:SO2094 hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF 2157806 4252391 Shewmr4_1817 Shewanella sp. MR-4 (NiFe) hydrogenase maturation protein HypF YP_733948.1 2155296 R 60480 CDS YP_733949.1 113970156 4252392 complement(2157878..2159728) 1 NC_008321.1 KEGG: son:SO2095 hypothetical protein; hypothetical protein 2159728 4252392 Shewmr4_1818 Shewanella sp. MR-4 hypothetical protein YP_733949.1 2157878 R 60480 CDS YP_733950.1 113970157 4252393 complement(2159709..2160287) 1 NC_008321.1 TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52, hydrogen uptake protein; KEGG: son:SO2096 hydrogenase expression/formation protein; hydrogenase expression/formation protein 2160287 4252393 Shewmr4_1819 Shewanella sp. MR-4 hydrogenase expression/formation protein YP_733950.1 2159709 R 60480 CDS YP_733951.1 113970158 4252394 complement(2160295..2160969) 1 NC_008321.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: son:SO2097 quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 2160969 4252394 Shewmr4_1820 Shewanella sp. MR-4 Ni/Fe-hydrogenase, b-type cytochrome subunit YP_733951.1 2160295 R 60480 CDS YP_733952.1 113970159 4252395 complement(2160991..2162694) 1 NC_008321.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: son:SO2098 hydrogenase large chain; nickel-dependent hydrogenase, large subunit 2162694 4252395 Shewmr4_1821 Shewanella sp. MR-4 nickel-dependent hydrogenase, large subunit YP_733952.1 2160991 R 60480 CDS YP_733953.1 113970160 4252396 complement(2162698..2163834) 1 NC_008321.1 KEGG: son:SO2099 hydrogenase small chain; TIGRFAM: hydrogenase (NiFe) small subunit HydA; Twin-arginine translocation pathway signal; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; hydrogenase (NiFe) small subunit HydA 2163834 4252396 Shewmr4_1822 Shewanella sp. MR-4 hydrogenase (NiFe) small subunit HydA YP_733953.1 2162698 R 60480 CDS YP_733954.1 113970161 4252397 2164185..2164652 1 NC_008321.1 PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: son:SO2100 thioredoxin family protein; redoxin domain-containing protein 2164652 4252397 Shewmr4_1823 Shewanella sp. MR-4 redoxin domain-containing protein YP_733954.1 2164185 D 60480 CDS YP_733955.1 113970162 4252398 2164656..2164877 1 NC_008321.1 KEGG: son:SO2101 lipoprotein, putative; putative lipoprotein 2164877 4252398 Shewmr4_1824 Shewanella sp. MR-4 putative lipoprotein YP_733955.1 2164656 D 60480 CDS YP_733956.1 113970163 4252399 2164970..2166316 1 NC_008321.1 KEGG: son:SO2102 hypothetical protein; hypothetical protein 2166316 4252399 Shewmr4_1825 Shewanella sp. MR-4 hypothetical protein YP_733956.1 2164970 D 60480 CDS YP_733957.1 113970164 4252400 2166419..2167321 1 NC_008321.1 PFAM: ApbE family lipoprotein; KEGG: son:SO2103 ApbE family protein; ApbE family lipoprotein 2167321 4252400 Shewmr4_1826 Shewanella sp. MR-4 ApbE family lipoprotein YP_733957.1 2166419 D 60480 CDS YP_733958.1 113970165 4252401 2167332..2167991 1 NC_008321.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2104 DNA-binding response regulator YgiX, putative; two component transcriptional regulator 2167991 4252401 Shewmr4_1827 Shewanella sp. MR-4 two component transcriptional regulator YP_733958.1 2167332 D 60480 CDS YP_733959.1 113970166 4252402 2168105..2169505 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2105 sensor protein YgiY, putative; periplasmic sensor signal transduction histidine kinase 2169505 4252402 Shewmr4_1828 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_733959.1 2168105 D 60480 CDS YP_733960.1 113970167 4252403 2169932..2171569 1 NC_008321.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 2171569 mdoG 4252403 mdoG Shewanella sp. MR-4 glucan biosynthesis protein G YP_733960.1 2169932 D 60480 CDS YP_733961.1 113970168 4252404 2171593..2173776 1 NC_008321.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 2173776 4252404 Shewmr4_1830 Shewanella sp. MR-4 glucosyltransferase MdoH YP_733961.1 2171593 D 60480 CDS YP_733962.1 113970169 4252405 2174007..2175635 1 NC_008321.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO2109 hypothetical protein; peptidoglycan binding domain-containing protein 2175635 4252405 Shewmr4_1831 Shewanella sp. MR-4 peptidoglycan binding domain-containing protein YP_733962.1 2174007 D 60480 CDS YP_733963.1 113970170 4252406 2175759..2176307 1 NC_008321.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: son:SO2110 hypothetical protein; hypothetical protein 2176307 4252406 Shewmr4_1832 Shewanella sp. MR-4 hypothetical protein YP_733963.1 2175759 D 60480 CDS YP_733964.1 113970171 4252407 complement(2176258..2176692) 1 NC_008321.1 KEGG: son:SO2111 hypothetical protein; hypothetical protein 2176692 4252407 Shewmr4_1833 Shewanella sp. MR-4 hypothetical protein YP_733964.1 2176258 R 60480 CDS YP_733965.1 113970172 4252408 2177005..2177292 1 NC_008321.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2177292 4252408 Shewmr4_1834 Shewanella sp. MR-4 50S ribosomal protein L25 YP_733965.1 2177005 D 60480 CDS YP_733966.1 113970173 4252409 complement(2177400..2181608) 1 NC_008321.1 PFAM: protein of unknown function DUF490; KEGG: son:SO2113 hypothetical protein; hypothetical protein 2181608 4252409 Shewmr4_1835 Shewanella sp. MR-4 hypothetical protein YP_733966.1 2177400 R 60480 CDS YP_733967.1 113970174 4252410 complement(2181605..2183380) 1 NC_008321.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO2114 hypothetical protein; surface antigen (D15) 2183380 4252410 Shewmr4_1836 Shewanella sp. MR-4 surface antigen (D15) YP_733967.1 2181605 R 60480 CDS YP_733968.1 113970175 4252411 2183582..2184613 1 NC_008321.1 PFAM: peptidase T2, asparaginase 2; KEGG: son:SO2115 asparaginase family protein; peptidase T2, asparaginase 2 2184613 4252411 Shewmr4_1837 Shewanella sp. MR-4 peptidase T2, asparaginase 2 YP_733968.1 2183582 D 60480 CDS YP_733969.1 113970176 4252412 2184865..2185281 1 NC_008321.1 PFAM: CBS domain containing protein; KEGG: son:SO2228 CBS domain protein; signal transduction protein 2185281 4252412 Shewmr4_1838 Shewanella sp. MR-4 signal transduction protein YP_733969.1 2184865 D 60480 CDS YP_733970.1 113970177 4252413 2185410..2189291 1 NC_008321.1 KEGG: son:SO2229 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD/DEAH box helicase domain protein; ATP-dependent helicase HrpA 2189291 4252413 Shewmr4_1839 Shewanella sp. MR-4 ATP-dependent helicase HrpA YP_733970.1 2185410 D 60480 CDS YP_733971.1 113970178 4252414 2190017..2190175 1 NC_008321.1 PFAM: periplasmic nitrate reductase NapE; KEGG: sdn:Sden_1495 periplasmic nitrate reductase NapE; periplasmic nitrate reductase NapE 2190175 4252414 Shewmr4_1840 Shewanella sp. MR-4 periplasmic nitrate reductase NapE YP_733971.1 2190017 D 60480 CDS YP_733972.1 113970179 4252415 2190217..2190474 1 NC_008321.1 PFAM: NapD family protein; KEGG: sdn:Sden_1496 NapD; NapD family protein 2190474 4252415 Shewmr4_1841 Shewanella sp. MR-4 NapD family protein YP_733972.1 2190217 D 60480 CDS YP_733973.1 113970180 4252416 2190477..2192966 1 NC_008321.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 2192966 4252416 Shewmr4_1842 Shewanella sp. MR-4 nitrate reductase catalytic subunit YP_733973.1 2190477 D 60480 CDS YP_733974.1 113970181 4252417 2192977..2193462 1 NC_008321.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: sdn:Sden_1498 nitrate reductase cytochrome c-type subunit (NapB); periplasmic nitrate reductase subunit NapB 2193462 4252417 Shewmr4_1843 Shewanella sp. MR-4 periplasmic nitrate reductase subunit NapB YP_733974.1 2192977 D 60480 CDS YP_733975.1 113970182 4252418 2193471..2194058 1 NC_008321.1 TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: sdn:Sden_1499 periplasmic nitrate reductase C-type cytochrome, NapC/NirT; periplasmic nitrate reductase subunit NapC 2194058 4252418 Shewmr4_1844 Shewanella sp. MR-4 periplasmic nitrate reductase subunit NapC YP_733975.1 2193471 D 60480 CDS YP_733976.1 113970183 4252419 2194609..2195094 1 NC_008321.1 KEGG: dps:DP0411 hypothetical protein; hypothetical protein 2195094 4252419 Shewmr4_1845 Shewanella sp. MR-4 hypothetical protein YP_733976.1 2194609 D 60480 CDS YP_733977.1 113970184 4252420 2195186..2196955 1 NC_008321.1 KEGG: fnu:FN0185 predicted ATP-dependent endonuclease of the OLD family; ATP-dependent OLD family endonuclease 2196955 4252420 Shewmr4_1846 Shewanella sp. MR-4 ATP-dependent OLD family endonuclease YP_733977.1 2195186 D 60480 CDS YP_733978.1 113970185 4252421 2197038..2197571 1 NC_008321.1 PFAM: isochorismatase hydrolase; KEGG: rme:Rmet_5659 isochorismatase hydrolase; isochorismatase hydrolase 2197571 4252421 Shewmr4_1847 Shewanella sp. MR-4 isochorismatase hydrolase YP_733978.1 2197038 D 60480 CDS YP_733979.1 113970186 4252422 2197652..2198305 1 NC_008321.1 KEGG: pae:PA2504 hypothetical protein; hypothetical protein 2198305 4252422 Shewmr4_1848 Shewanella sp. MR-4 hypothetical protein YP_733979.1 2197652 D 60480 CDS YP_733980.1 113970187 4252423 2198411..2198833 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_06505 histone acetyltransferase HPA2/related acetyltransferase; GCN5-related N-acetyltransferase 2198833 4252423 Shewmr4_1849 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_733980.1 2198411 D 60480 CDS YP_733981.1 113970188 4252424 complement(2199205..2199441) 1 NC_008321.1 KEGG: son:SO2479 hypothetical protein; hypothetical protein 2199441 4252424 Shewmr4_1850 Shewanella sp. MR-4 hypothetical protein YP_733981.1 2199205 R 60480 CDS YP_733982.1 113970189 4252425 complement(2199470..2200207) 1 NC_008321.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2200207 4252425 Shewmr4_1851 Shewanella sp. MR-4 3-deoxy-manno-octulosonate cytidylyltransferase YP_733982.1 2199470 R 60480 CDS YP_733983.1 113970190 4252426 complement(2200290..2201360) 1 NC_008321.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO2477 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 2201360 4252426 Shewmr4_1852 Shewanella sp. MR-4 iron-containing alcohol dehydrogenase YP_733983.1 2200290 R 60480 CDS YP_733984.1 113970191 4252427 complement(2201380..2202567) 1 NC_008321.1 PFAM: aminotransferase, class V; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO2476 polysaccharide biosynthesis protein; DegT/DnrJ/EryC1/StrS aminotransferase 2202567 4252427 Shewmr4_1853 Shewanella sp. MR-4 DegT/DnrJ/EryC1/StrS aminotransferase YP_733984.1 2201380 R 60480 CDS YP_733985.1 113970192 4252428 complement(2202957..2203562) 1 NC_008321.1 PFAM: carbonic anhydrase; KEGG: son:SO2474 carbonic anhydrase family protein; carbonate dehydratase 2203562 4252428 Shewmr4_1854 Shewanella sp. MR-4 carbonate dehydratase YP_733985.1 2202957 R 60480 CDS YP_733986.1 113970193 4252429 complement(2203716..2204546) 1 NC_008321.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO2473 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold domain-containing protein 2204546 4252429 Shewmr4_1855 Shewanella sp. MR-4 alpha/beta hydrolase fold domain-containing protein YP_733986.1 2203716 R 60480 CDS YP_733987.1 113970194 4252430 complement(2204612..2205424) 1 NC_008321.1 PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: son:SO2472 D-alanyl-D-alanine carboxypeptidase-related protein; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins 2205424 4252430 Shewmr4_1856 Shewanella sp. MR-4 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins YP_733987.1 2204612 R 60480 CDS YP_733988.1 113970195 4252431 complement(2205418..2206563) 1 NC_008321.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2206563 4252431 Shewmr4_1857 Shewanella sp. MR-4 succinyl-diaminopimelate desuccinylase YP_733988.1 2205418 R 60480 CDS YP_733989.1 113970196 4252432 complement(2206560..2206964) 1 NC_008321.1 TIGRFAM: conserved hypothetical protein; PFAM: arsenate reductase and related; KEGG: son:SO2470 hypothetical protein; hypothetical protein 2206964 4252432 Shewmr4_1858 Shewanella sp. MR-4 hypothetical protein YP_733989.1 2206560 R 60480 CDS YP_733990.1 113970197 4252433 complement(2207398..2210070) 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: vvy:VV0250 outer membrane receptor protein; TonB-dependent receptor 2210070 4252433 Shewmr4_1859 Shewanella sp. MR-4 TonB-dependent receptor YP_733990.1 2207398 R 60480 CDS YP_733991.1 113970198 4252434 2210871..2211776 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VPA0365 putative transcriptional regulator protein; LysR family transcriptional regulator 2211776 4252434 Shewmr4_1860 Shewanella sp. MR-4 LysR family transcriptional regulator YP_733991.1 2210871 D 60480 CDS YP_733992.1 113970199 4252435 2211862..2212974 1 NC_008321.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: vpa:VPA0364 putative efflux protein; RND family efflux transporter MFP subunit 2212974 4252435 Shewmr4_1861 Shewanella sp. MR-4 RND family efflux transporter MFP subunit YP_733992.1 2211862 D 60480 CDS YP_733993.1 113970200 4252436 2212971..2216078 1 NC_008321.1 PFAM: acriflavin resistance protein; KEGG: vpa:VPA0363 putative efflux protein; acriflavin resistance protein 2216078 4252436 Shewmr4_1862 Shewanella sp. MR-4 acriflavin resistance protein YP_733993.1 2212971 D 60480 CDS YP_733994.1 113970201 4252437 2216081..2217550 1 NC_008321.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: vpa:VPA0362 putative outer membrane protein; RND efflux system outer membrane lipoprotein 2217550 4252437 Shewmr4_1863 Shewanella sp. MR-4 RND efflux system outer membrane lipoprotein YP_733994.1 2216081 D 60480 CDS YP_733995.1 113970202 4252438 2217673..2218953 1 NC_008321.1 TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: vpa:VP2017 paraquat-inducible protein A; PqiA family integral membrane protein 2218953 4252438 Shewmr4_1864 Shewanella sp. MR-4 PqiA family integral membrane protein YP_733995.1 2217673 D 60480 CDS YP_733996.1 113970203 4252439 2218970..2220634 1 NC_008321.1 PFAM: Mammalian cell entry related domain protein; KEGG: ppr:PBPRB1160 putative paraquat-inducible protein B; hypothetical protein 2220634 4252439 Shewmr4_1865 Shewanella sp. MR-4 hypothetical protein YP_733996.1 2218970 D 60480 CDS YP_733997.1 113970204 4252440 2220636..2221229 1 NC_008321.1 PFAM: protein of unknown function DUF330; KEGG: noc:Noc_2723 protein of unknown function DUF330; hypothetical protein 2221229 4252440 Shewmr4_1866 Shewanella sp. MR-4 hypothetical protein YP_733997.1 2220636 D 60480 CDS YP_733998.1 113970205 4252441 complement(2221386..2222774) 1 NC_008321.1 PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: mag:amb4188 di- and tricarboxylate transporters; sodium/sulfate symporter 2222774 4252441 Shewmr4_1867 Shewanella sp. MR-4 sodium/sulfate symporter YP_733998.1 2221386 R 60480 CDS YP_733999.1 113970206 4252442 2222854..2223666 1 NC_008321.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: pae:PA3927 probable transcriptional regulator; AraC family transcriptional regulator 2223666 4252442 Shewmr4_1868 Shewanella sp. MR-4 AraC family transcriptional regulator YP_733999.1 2222854 D 60480 CDS YP_734000.1 113970207 4252443 complement(2223859..2226375) 1 NC_008321.1 KEGG: son:SO2459 glucoamylase; TIGRFAM: glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related; glucan 1,4-alpha-glucosidase 2226375 4252443 Shewmr4_1869 Shewanella sp. MR-4 glucan 1,4-alpha-glucosidase YP_734000.1 2223859 R 60480 CDS YP_734001.1 113970208 4252444 complement(2226513..2228108) 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2458 transporter, putative; major facilitator transporter 2228108 4252444 Shewmr4_1870 Shewanella sp. MR-4 major facilitator transporter YP_734001.1 2226513 R 60480 CDS YP_734002.1 113970209 4252445 2228853..2229146 1 NC_008321.1 PFAM: YCII-related; KEGG: son:SO2457 hypothetical protein; YCII-like protein 2229146 4252445 Shewmr4_1871 Shewanella sp. MR-4 YCII-like protein YP_734002.1 2228853 D 60480 CDS YP_734003.1 113970210 4252446 2229281..2230159 1 NC_008321.1 KEGG: pcr:Pcryo_0089 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 2230159 4252446 Shewmr4_1872 Shewanella sp. MR-4 alpha/beta hydrolase fold domain-containing protein YP_734003.1 2229281 D 60480 CDS YP_734004.1 113970211 4252447 2230347..2231354 1 NC_008321.1 KEGG: son:SO2451 hypothetical protein; hypothetical protein 2231354 4252447 Shewmr4_1873 Shewanella sp. MR-4 hypothetical protein YP_734004.1 2230347 D 60480 CDS YP_734005.1 113970212 4252448 complement(2231440..2231889) 1 NC_008321.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pfo:Pfl_3201 alkylhydroperoxidase AhpD core; alkylhydroperoxidase 2231889 4252448 Shewmr4_1874 Shewanella sp. MR-4 alkylhydroperoxidase YP_734005.1 2231440 R 60480 CDS YP_734006.1 113970213 4252449 complement(2231926..2232810) 1 NC_008321.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ilo:IL2485 transcriptional regulator, AraC family; AraC family transcriptional regulator 2232810 4252449 Shewmr4_1875 Shewanella sp. MR-4 AraC family transcriptional regulator YP_734006.1 2231926 R 60480 CDS YP_734007.1 113970214 4252450 complement(2233126..2235237) 1 NC_008321.1 KEGG: son:SO2450 alpha-glucosidase; alpha-glucosidase 2235237 4252450 Shewmr4_1876 Shewanella sp. MR-4 alpha-glucosidase YP_734007.1 2233126 R 60480 CDS YP_734008.1 113970215 4252451 2235508..2236350 1 NC_008321.1 KEGG: son:SO2449 hypothetical protein; hypothetical protein 2236350 4252451 Shewmr4_1877 Shewanella sp. MR-4 hypothetical protein YP_734008.1 2235508 D 60480 CDS YP_734009.1 113970216 4252452 2236464..2236994 1 NC_008321.1 PFAM: NUDIX hydrolase; KEGG: son:SO2448 MutT/nudix family protein; NUDIX hydrolase 2236994 4252452 Shewmr4_1878 Shewanella sp. MR-4 NUDIX hydrolase YP_734009.1 2236464 D 60480 CDS YP_734010.1 113970217 4252453 complement(2237086..2237769) 1 NC_008321.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: son:SO2447 channel protein, hemolysin III family subfamily; hemolysin III family channel protein 2237769 4252453 Shewmr4_1879 Shewanella sp. MR-4 hemolysin III family channel protein YP_734010.1 2237086 R 60480 CDS YP_734011.1 113970218 4252454 2238046..2239164 1 NC_008321.1 KEGG: son:SO2446 hypothetical protein; hypothetical protein 2239164 4252454 Shewmr4_1880 Shewanella sp. MR-4 hypothetical protein YP_734011.1 2238046 D 60480 CDS YP_734012.1 113970219 4252455 2239597..2241759 1 NC_008321.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2241759 4252455 Shewmr4_1881 Shewanella sp. MR-4 thiamine biosynthesis protein ThiC YP_734012.1 2239597 D 60480 CDS YP_734013.1 113970220 4252456 2241762..2243459 1 NC_008321.1 KEGG: son:SO2444 phosphomethylpyrimidine kinase / thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; thiamine-phosphate pyrophosphorylase 2243459 4252456 Shewmr4_1882 Shewanella sp. MR-4 thiamine-phosphate pyrophosphorylase YP_734013.1 2241762 D 60480 CDS YP_734014.1 113970221 4252457 2243456..2244475 1 NC_008321.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: son:SO2443 thiF protein, putative; UBA/THIF-type NAD/FAD binding protein 2244475 4252457 Shewmr4_1883 Shewanella sp. MR-4 UBA/THIF-type NAD/FAD binding protein YP_734014.1 2243456 D 60480 CDS YP_734015.1 113970222 4252458 2244472..2244675 1 NC_008321.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: son:SO2442 thiS protein, putative; thiamine biosynthesis protein ThiS 2244675 4252458 Shewmr4_1884 Shewanella sp. MR-4 thiamine biosynthesis protein ThiS YP_734015.1 2244472 D 60480 CDS YP_734016.1 113970223 4252459 2244677..2245441 1 NC_008321.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2245441 thiG 4252459 thiG Shewanella sp. MR-4 thiazole synthase YP_734016.1 2244677 D 60480 CDS YP_734017.1 113970224 4252460 2245438..2246553 1 NC_008321.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2246553 thiH 4252460 thiH Shewanella sp. MR-4 thiamine biosynthesis protein ThiH YP_734017.1 2245438 D 60480 CDS YP_734018.1 113970225 4252461 2246678..2246941 1 NC_008321.1 KEGG: son:SO2439.2 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 2246941 4252461 Shewmr4_1887 Shewanella sp. MR-4 methyl-accepting chemotaxis protein YP_734018.1 2246678 D 60480 CDS YP_734019.1 113970226 4252462 2246944..2249097 1 NC_008321.1 KEGG: son:SO2439 SrpA-related protein; SrpA-like protein 2249097 4252462 Shewmr4_1888 Shewanella sp. MR-4 SrpA-like protein YP_734019.1 2246944 D 60480 CDS YP_734020.1 113970227 4252463 complement(2249275..2250177) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2438 transcriptional regulator, LysR family; LysR family transcriptional regulator 2250177 4252463 Shewmr4_1889 Shewanella sp. MR-4 LysR family transcriptional regulator YP_734020.1 2249275 R 60480 CDS YP_734021.1 113970228 4252464 complement(2250352..2251551) 1 NC_008321.1 KEGG: sdn:Sden_1895 hypothetical protein; hypothetical protein 2251551 4252464 Shewmr4_1890 Shewanella sp. MR-4 hypothetical protein YP_734021.1 2250352 R 60480 CDS YP_734022.1 113970229 4252465 complement(2251478..2253385) 1 NC_008321.1 KEGG: son:SO2437 hypothetical protein; hypothetical protein 2253385 4252465 Shewmr4_1891 Shewanella sp. MR-4 hypothetical protein YP_734022.1 2251478 R 60480 CDS YP_734023.1 113970230 4252466 complement(2253360..2254304) 1 NC_008321.1 TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: sdn:Sden_1893 alpha-L-glutamate ligase-related protein; alpha-L-glutamate ligase-like protein 2254304 4252466 Shewmr4_1892 Shewanella sp. MR-4 alpha-L-glutamate ligase-like protein YP_734023.1 2253360 R 60480 CDS YP_734024.1 113970231 4252467 complement(2254304..2255812) 1 NC_008321.1 KEGG: sdn:Sden_1892 gonadoliberin III-related protein; gonadoliberin III-like protein 2255812 4252467 Shewmr4_1893 Shewanella sp. MR-4 gonadoliberin III-like protein YP_734024.1 2254304 R 60480 CDS YP_734025.1 113970232 4252468 complement(2255963..2256787) 1 NC_008321.1 PFAM: protein of unknown function DUF785; KEGG: sdn:Sden_1891 protein of unknown function DUF785; hypothetical protein 2256787 4252468 Shewmr4_1894 Shewanella sp. MR-4 hypothetical protein YP_734025.1 2255963 R 60480 CDS YP_734026.1 113970233 4252469 complement(2256871..2257863) 1 NC_008321.1 TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2436 methyltransferase, putative; putative methyltransferase 2257863 4252469 Shewmr4_1895 Shewanella sp. MR-4 putative methyltransferase YP_734026.1 2256871 R 60480 CDS YP_734027.1 113970234 4252470 complement(2257860..2258591) 1 NC_008321.1 TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2435 methyltransferase, putative; putative methyltransferase 2258591 4252470 Shewmr4_1896 Shewanella sp. MR-4 putative methyltransferase YP_734027.1 2257860 R 60480 CDS YP_734028.1 113970235 4252471 2258740..2261553 1 NC_008321.1 KEGG: son:SO2434 extracellular solute-binding proteins, family 3/GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3; diguanylate cyclase 2261553 4252471 Shewmr4_1897 Shewanella sp. MR-4 diguanylate cyclase YP_734028.1 2258740 D 60480 CDS YP_734029.1 113970236 4252472 2261738..2263513 1 NC_008321.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2263513 aspS 4252472 aspS Shewanella sp. MR-4 aspartyl-tRNA synthetase YP_734029.1 2261738 D 60480 CDS YP_734030.1 113970237 4252473 2263730..2264476 1 NC_008321.1 PFAM: protein of unknown function DUF28; KEGG: son:SO2432 conserved hypothetical protein TIGR01033; hypothetical protein 2264476 4252473 Shewmr4_1899 Shewanella sp. MR-4 hypothetical protein YP_734030.1 2263730 D 60480 CDS YP_734031.1 113970238 4252474 2264734..2265255 1 NC_008321.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2265255 ruvC 4252474 ruvC Shewanella sp. MR-4 Holliday junction resolvase YP_734031.1 2264734 D 60480 CDS YP_734032.1 113970239 4252475 2265252..2265869 1 NC_008321.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2265869 ruvA 4252475 ruvA Shewanella sp. MR-4 Holliday junction DNA helicase RuvA YP_734032.1 2265252 D 60480 CDS YP_734033.1 113970240 4252476 2265990..2266994 1 NC_008321.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2266994 ruvB 4252476 ruvB Shewanella sp. MR-4 Holliday junction DNA helicase RuvB YP_734033.1 2265990 D 60480 CDS YP_734034.1 113970241 4252477 2267956..2270523 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2427 TonB-dependent receptor, putative; TonB-dependent receptor 2270523 4252477 Shewmr4_1903 Shewanella sp. MR-4 TonB-dependent receptor YP_734034.1 2267956 D 60480 CDS YP_734035.1 113970242 4252478 2270720..2271400 1 NC_008321.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2426 DNA-binding response regulator; two component transcriptional regulator 2271400 4252478 Shewmr4_1904 Shewanella sp. MR-4 two component transcriptional regulator YP_734035.1 2270720 D 60480 CDS YP_734036.1 113970243 4252479 2271581..2272708 1 NC_008321.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: son:SO2424 zinc carboxypeptidase domain protein; peptidase M14, carboxypeptidase A 2272708 4252479 Shewmr4_1905 Shewanella sp. MR-4 peptidase M14, carboxypeptidase A YP_734036.1 2271581 D 60480 CDS YP_734037.1 113970244 4252480 2272717..2273034 1 NC_008321.1 KEGG: son:SO2423 hypothetical protein; hypothetical protein 2273034 4252480 Shewmr4_1906 Shewanella sp. MR-4 hypothetical protein YP_734037.1 2272717 D 60480 CDS YP_734038.1 113970245 4252481 2273031..2273312 1 NC_008321.1 PFAM: protein of unknown function DUF1315; KEGG: son:SO2422 hypothetical protein; hypothetical protein 2273312 4252481 Shewmr4_1907 Shewanella sp. MR-4 hypothetical protein YP_734038.1 2273031 D 60480 CDS YP_734039.1 113970246 4252482 complement(2273383..2274396) 1 NC_008321.1 converts asparagine to aspartate and ammonia; cytoplasmic asparaginase I 2274396 ansA 4252482 ansA Shewanella sp. MR-4 cytoplasmic asparaginase I YP_734039.1 2273383 R 60480 CDS YP_734040.1 113970247 4252483 complement(2274508..2276352) 1 NC_008321.1 TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: son:SO2420 signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 67K type 2276352 4252483 Shewmr4_1909 Shewanella sp. MR-4 signal peptide peptidase SppA, 67K type YP_734040.1 2274508 R 60480 CDS YP_734041.1 113970248 4252484 2276518..2278536 1 NC_008321.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO2419 2,4-dienoyl-CoA reductase, putative; 2,4-dienoyl-CoA reductase 2278536 4252484 Shewmr4_1910 Shewanella sp. MR-4 2,4-dienoyl-CoA reductase YP_734041.1 2276518 D 60480 CDS YP_734042.1 113970249 4252485 complement(2278581..2279384) 1 NC_008321.1 PFAM: Integrase, catalytic region; KEGG: pcr:Pcryo_0715 Integrase, catalytic region; integrase catalytic subunit 2279384 4252485 Shewmr4_1911 Shewanella sp. MR-4 integrase catalytic subunit YP_734042.1 2278581 R 60480 CDS YP_734043.1 113970250 4252486 complement(2279414..2279809) 1 NC_008321.1 KEGG: dde:Dde_2987 transposase; transposase 2279809 4252486 Shewmr4_1912 Shewanella sp. MR-4 transposase YP_734043.1 2279414 R 60480 CDS YP_734044.1 113970251 4252487 complement(2279939..2280409) 1 NC_008321.1 KEGG: sdn:Sden_2845 hypothetical protein; hypothetical protein 2280409 4252487 Shewmr4_1913 Shewanella sp. MR-4 hypothetical protein YP_734044.1 2279939 R 60480 CDS YP_734045.1 113970252 4252488 complement(2280593..2281003) 1 NC_008321.1 PFAM: ferredoxin; KEGG: son:SO2417 iron-sulfur cluster-binding protein; ferredoxin 2281003 4252488 Shewmr4_1914 Shewanella sp. MR-4 ferredoxin YP_734045.1 2280593 R 60480 CDS YP_734046.1 113970253 4252489 complement(2281020..2282150) 1 NC_008321.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2282150 nrdB 4252489 nrdB Shewanella sp. MR-4 ribonucleotide-diphosphate reductase subunit beta YP_734046.1 2281020 R 60480 CDS YP_734047.1 113970254 4252490 complement(2282212..2284500) 1 NC_008321.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2284500 4252490 Shewmr4_1916 Shewanella sp. MR-4 ribonucleotide-diphosphate reductase subunit alpha YP_734047.1 2282212 R 60480 CDS YP_734048.1 113970255 4252491 complement(2284988..2285662) 1 NC_008321.1 KEGG: son:SO2414 phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 2285662 4252491 Shewmr4_1917 Shewanella sp. MR-4 HAD family hydrolase YP_734048.1 2284988 R 60480 CDS YP_734049.1 113970256 4252492 complement(2285664..2286374) 1 NC_008321.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2286374 4252492 Shewmr4_1918 Shewanella sp. MR-4 3-demethylubiquinone-9 3-methyltransferase YP_734049.1 2285664 R 60480 CDS YP_734050.1 113970257 4252493 2286682..2289522 1 NC_008321.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: son:SO2411 DNA gyrase subunit A; DNA gyrase subunit A 2289522 4252493 Shewmr4_1919 Shewanella sp. MR-4 DNA gyrase subunit A YP_734050.1 2286682 D 60480 CDS YP_734051.1 113970258 4252494 2289628..2290719 1 NC_008321.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2290719 4252494 Shewmr4_1920 Shewanella sp. MR-4 phosphoserine aminotransferase YP_734051.1 2289628 D 60480 CDS YP_734052.1 113970259 4252495 complement(2290978..2292168) 1 NC_008321.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2292168 4252495 Shewmr4_1921 Shewanella sp. MR-4 aromatic amino acid aminotransferase YP_734052.1 2290978 R 60480 CDS YP_734053.1 113970260 4252496 2292604..2293884 1 NC_008321.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2293884 4252496 Shewmr4_1922 Shewanella sp. MR-4 3-phosphoshikimate 1-carboxyvinyltransferase YP_734053.1 2292604 D 60480 CDS YP_734054.1 113970261 4252497 2294067..2294759 1 NC_008321.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2294759 cmk 4252497 cmk Shewanella sp. MR-4 cytidylate kinase YP_734054.1 2294067 D 60480 CDS YP_734055.1 113970262 4252498 2294862..2296529 1 NC_008321.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2296529 rpsA 4252498 rpsA Shewanella sp. MR-4 30S ribosomal protein S1 YP_734055.1 2294862 D 60480 CDS YP_734056.1 113970263 4252499 2296602..2296889 1 NC_008321.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2296889 ihfB 4252499 ihfB Shewanella sp. MR-4 integration host factor subunit beta YP_734056.1 2296602 D 60480 CDS YP_734057.1 113970264 4252500 2297013..2297288 1 NC_008321.1 PFAM: protein of unknown function DUF1049; KEGG: son:SO2400 hypothetical protein; hypothetical protein 2297288 4252500 Shewmr4_1926 Shewanella sp. MR-4 hypothetical protein YP_734057.1 2297013 D 60480 CDS YP_734058.1 113970265 4252501 2297290..2298450 1 NC_008321.1 KEGG: son:SO2399 hypothetical protein; hypothetical protein 2298450 4252501 Shewmr4_1927 Shewanella sp. MR-4 hypothetical protein YP_734058.1 2297290 D 60480 CDS YP_734059.1 113970266 4252502 2298493..2299188 1 NC_008321.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2299188 4252502 Shewmr4_1928 Shewanella sp. MR-4 orotidine 5'-phosphate decarboxylase YP_734059.1 2298493 D 60480 CDS YP_734060.1 113970267 4252503 2299261..2300058 1 NC_008321.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO2397 short chain dehydrogenase; short chain dehydrogenase 2300058 4252503 Shewmr4_1929 Shewanella sp. MR-4 short chain dehydrogenase YP_734060.1 2299261 D 60480 CDS YP_734061.1 113970268 4252504 2300148..2300690 1 NC_008321.1 KEGG: son:SO2396 hypothetical protein; hypothetical protein 2300690 4252504 Shewmr4_1930 Shewanella sp. MR-4 hypothetical protein YP_734061.1 2300148 D 60480 CDS YP_734062.1 113970269 4252505 2300908..2302665 1 NC_008321.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO2395 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 2302665 4252505 Shewmr4_1931 Shewanella sp. MR-4 acyl-CoA dehydrogenase domain-containing protein YP_734062.1 2300908 D 60480 CDS YP_734063.1 113970270 4252506 complement(2302774..2304315) 1 NC_008321.1 KEGG: son:SO2394 penicillin-binding protein 4; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 2304315 4252506 Shewmr4_1932 Shewanella sp. MR-4 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_734063.1 2302774 R 60480 CDS YP_734064.1 113970271 4252507 complement(2304342..2304518) 1 NC_008321.1 KEGG: son:SO2393 hypothetical protein; hypothetical protein 2304518 4252507 Shewmr4_1933 Shewanella sp. MR-4 hypothetical protein YP_734064.1 2304342 R 60480 CDS YP_734065.1 113970272 4252508 2304899..2305231 1 NC_008321.1 KEGG: son:SO2391 hypothetical protein; hypothetical protein 2305231 4252508 Shewmr4_1934 Shewanella sp. MR-4 hypothetical protein YP_734065.1 2304899 D 60480 CDS YP_734066.1 113970273 4252509 2305243..2306556 1 NC_008321.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2306556 pssA 4252509 pssA Shewanella sp. MR-4 phosphatidylserine synthase YP_734066.1 2305243 D 60480 CDS YP_734067.1 113970274 4252510 complement(2306620..2307864) 1 NC_008321.1 multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 2307864 emrD 4252510 emrD Shewanella sp. MR-4 multidrug resistance protein D YP_734067.1 2306620 R 60480 CDS YP_734068.1 113970275 4252511 complement(2308205..2309458) 1 NC_008321.1 PFAM: beta-lactamase; KEGG: son:SO2388 beta-lactamase; beta-lactamase 2309458 ampC 4252511 ampC Shewanella sp. MR-4 beta-lactamase YP_734068.1 2308205 R 60480 CDS YP_734069.1 113970276 4252512 2309886..2310650 1 NC_008321.1 PFAM: DTW domain containing protein; KEGG: son:SO2387 conserved hypothetical protein; DTW domain-containing protein 2310650 4252512 Shewmr4_1938 Shewanella sp. MR-4 DTW domain-containing protein YP_734069.1 2309886 D 60480 CDS YP_734070.1 113970277 4252513 2310916..2312172 1 NC_008321.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bth:BT0304 acriflavine resistance protein A precursor; RND family efflux transporter MFP subunit 2312172 4252513 Shewmr4_1939 Shewanella sp. MR-4 RND family efflux transporter MFP subunit YP_734070.1 2310916 D 60480 CDS YP_734071.1 113970278 4252514 2312172..2315339 1 NC_008321.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bth:BT0305 putative aminoglycoside efflux pump (acriflavine resistance protein); hydrophobe/amphiphile efflux-1 (HAE1) family protein 2315339 4252514 Shewmr4_1940 Shewanella sp. MR-4 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_734071.1 2312172 D 60480 CDS YP_734072.1 113970279 4252515 2315332..2316825 1 NC_008321.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sat:SYN_02946 type I secretion outer membrane protein; RND efflux system outer membrane lipoprotein 2316825 4252515 Shewmr4_1941 Shewanella sp. MR-4 RND efflux system outer membrane lipoprotein YP_734072.1 2315332 D 60480 CDS YP_734073.1 113970280 4252516 complement(2316876..2318933) 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF839; KEGG: son:SO2385 hypothetical protein; twin-arginine translocation pathway signal 2318933 4252516 Shewmr4_1942 Shewanella sp. MR-4 twin-arginine translocation pathway signal YP_734073.1 2316876 R 60480 CDS YP_734074.1 113970281 4252517 complement(2319129..2320238) 1 NC_008321.1 PFAM: phage integrase family protein; KEGG: son:SO2384 site-specific recombinase, phage integrase family; phage integrase family protein 2320238 4252517 Shewmr4_1943 Shewanella sp. MR-4 phage integrase family protein YP_734074.1 2319129 R 60480 CDS YP_734075.1 113970282 4252518 2320864..2321364 1 NC_008321.1 KEGG: son:SO2383 hypothetical protein; hypothetical protein 2321364 4252518 Shewmr4_1944 Shewanella sp. MR-4 hypothetical protein YP_734075.1 2320864 D 60480 CDS YP_734076.1 113970283 4252519 2321521..2321847 1 NC_008321.1 KEGG: son:SO2381 hypothetical protein; hypothetical protein 2321847 4252519 Shewmr4_1945 Shewanella sp. MR-4 hypothetical protein YP_734076.1 2321521 D 60480 CDS YP_734077.1 113970284 4252520 2321936..2323912 1 NC_008321.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2380 RecQ domain protein; ATP-dependent DNA helicase RecQ 2323912 4252520 Shewmr4_1946 Shewanella sp. MR-4 ATP-dependent DNA helicase RecQ YP_734077.1 2321936 D 60480 CDS YP_734078.1 113970285 4252521 complement(2323997..2324548) 1 NC_008321.1 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2324548 4252521 Shewmr4_1947 Shewanella sp. MR-4 ecotin YP_734078.1 2323997 R 60480 CDS YP_734079.1 113970286 4252522 2325279..2326280 1 NC_008321.1 KEGG: pha:PSHAb0175 conserved protein of unknown function ; putative lipoprotein; hypothetical protein 2326280 4252522 Shewmr4_1948 Shewanella sp. MR-4 hypothetical protein YP_734079.1 2325279 D 60480 CDS YP_734080.1 113970287 4252523 2327223..2328068 1 NC_008321.1 KEGG: eli:ELI_11055 hypothetical protein; hypothetical protein 2328068 4252523 Shewmr4_1950 Shewanella sp. MR-4 hypothetical protein YP_734080.1 2327223 D 60480 CDS YP_734081.1 113970288 4252524 complement(2328664..2330043) 1 NC_008321.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO2295 MATE efflux family protein; MATE efflux family protein 2330043 4252524 Shewmr4_1951 Shewanella sp. MR-4 MATE efflux family protein YP_734081.1 2328664 R 60480 CDS YP_734082.1 113970289 4252525 2330077..2330697 1 NC_008321.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2330697 4252525 Shewmr4_1952 Shewanella sp. MR-4 riboflavin synthase subunit alpha YP_734082.1 2330077 D 60480 CDS YP_734083.1 113970290 4252526 complement(2330707..2330907) 1 NC_008321.1 KEGG: son:SO2297 hypothetical protein; hypothetical protein 2330907 4252526 Shewmr4_1953 Shewanella sp. MR-4 hypothetical protein YP_734083.1 2330707 R 60480 CDS YP_734084.1 113970291 4252527 complement(2331122..2331505) 1 NC_008321.1 KEGG: son:SO2298 hypothetical protein; hypothetical protein 2331505 4252527 Shewmr4_1954 Shewanella sp. MR-4 hypothetical protein YP_734084.1 2331122 R 60480 CDS YP_734085.1 113970292 4252528 2331757..2333685 1 NC_008321.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2333685 4252528 Shewmr4_1955 Shewanella sp. MR-4 threonyl-tRNA synthetase YP_734085.1 2331757 D 60480 CDS YP_734086.1 113970293 4252529 2333800..2334231 1 NC_008321.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2334231 infC 4252529 infC Shewanella sp. MR-4 translation initiation factor IF-3 YP_734086.1 2333800 D 60480 CDS YP_734087.1 113970294 4252530 2334316..2334510 1 NC_008321.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: son:SO2301 50S ribosomal protein L35; 50S ribosomal protein L35 2334510 rpmI 4252530 rpmI Shewanella sp. MR-4 50S ribosomal protein L35 YP_734087.1 2334316 D 60480 CDS YP_734088.1 113970295 4252531 2334527..2334883 1 NC_008321.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2334883 rplT 4252531 rplT Shewanella sp. MR-4 50S ribosomal protein L20 YP_734088.1 2334527 D 60480 CDS YP_734089.1 113970296 4252532 complement(2335047..2336000) 1 NC_008321.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO2303 thioredoxin reductase; thioredoxin reductase 2336000 4252532 Shewmr4_1959 Shewanella sp. MR-4 thioredoxin reductase YP_734089.1 2335047 R 60480 CDS YP_734090.1 113970297 4252533 2336266..2336469 1 NC_008321.1 KEGG: son:SO1485 hypothetical protein; hypothetical protein 2336469 4252533 Shewmr4_1960 Shewanella sp. MR-4 hypothetical protein YP_734090.1 2336266 D 60480 CDS YP_734091.1 113970298 4252534 complement(2336518..2337633) 1 NC_008321.1 TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: sdn:Sden_1741 alanine dehydrogenase; L-alanine dehydrogenase 2337633 4252534 Shewmr4_1961 Shewanella sp. MR-4 L-alanine dehydrogenase YP_734091.1 2336518 R 60480 CDS YP_734092.1 113970299 4252535 2337814..2338320 1 NC_008321.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 2338320 4252535 Shewmr4_1962 Shewanella sp. MR-4 leucine-responsive transcriptional regulator YP_734092.1 2337814 D 60480 CDS YP_734093.1 113970300 4252536 2338642..2341386 1 NC_008321.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: son:SO2306 cell division protein FtsK, putative; DNA translocase FtsK 2341386 4252536 Shewmr4_1963 Shewanella sp. MR-4 DNA translocase FtsK YP_734093.1 2338642 D 60480 CDS YP_734094.1 113970301 4252537 2341456..2342076 1 NC_008321.1 TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: son:SO2307 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 2342076 4252537 Shewmr4_1964 Shewanella sp. MR-4 outer membrane lipoprotein carrier protein LolA YP_734094.1 2341456 D 60480 CDS YP_734095.1 113970302 4252538 2342085..2343416 1 NC_008321.1 PFAM: magnesium chelatase, ChlI subunit; AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: son:SO2308 ATPase, AAA family; recombination factor protein RarA 2343416 4252538 Shewmr4_1965 Shewanella sp. MR-4 recombination factor protein RarA YP_734095.1 2342085 D 60480 CDS YP_734096.1 113970303 4252539 2343409..2343783 1 NC_008321.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2343783 4252539 Shewmr4_1966 Shewanella sp. MR-4 camphor resistance protein CrcB YP_734096.1 2343409 D 60480 CDS YP_734097.1 113970304 4252540 2343802..2345088 1 NC_008321.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2345088 4252540 Shewmr4_1967 Shewanella sp. MR-4 seryl-tRNA synthetase YP_734097.1 2343802 D 60480 CDS YP_734098.1 113970305 4252541 2345107..2345229 1 NC_008321.1 KEGG: son:SO2311 hypothetical protein; hypothetical protein 2345229 4252541 Shewmr4_1968 Shewanella sp. MR-4 hypothetical protein YP_734098.1 2345107 D 60480 CDS YP_734099.1 113970306 4252542 complement(2345297..2345635) 1 NC_008321.1 PFAM: DsrC family protein; KEGG: son:SO2379 putative sulfite reductase; DsrC family protein 2345635 4252542 Shewmr4_1969 Shewanella sp. MR-4 DsrC family protein YP_734099.1 2345297 R 60480 CDS YP_734100.1 113970307 4252543 complement(2345629..2345910) 1 NC_008321.1 PFAM: DsrH family protein; KEGG: son:SO2378 putative uncharacterized protein involved in oxidation of intracellular sulfur; DsrH family protein 2345910 4252543 Shewmr4_1970 Shewanella sp. MR-4 DsrH family protein YP_734100.1 2345629 R 60480 CDS YP_734101.1 113970308 4252544 complement(2345910..2346266) 1 NC_008321.1 PFAM: DsrE family protein; KEGG: son:SO2377 putative uncharacterized protein involved in oxidation of intracellular sulfur; DsrE family protein 2346266 4252544 Shewmr4_1971 Shewanella sp. MR-4 DsrE family protein YP_734101.1 2345910 R 60480 CDS YP_734102.1 113970309 4252545 complement(2346281..2346673) 1 NC_008321.1 PFAM: DsrE family protein; KEGG: son:SO2376 DsrE-related protein; DsrE family protein 2346673 4252545 Shewmr4_1972 Shewanella sp. MR-4 DsrE family protein YP_734102.1 2346281 R 60480 CDS YP_734103.1 113970310 4252546 complement(2346730..2347389) 1 NC_008321.1 PFAM: protein of unknown function UPF0005; KEGG: son:SO2375 membrane protein, putative; hypothetical protein 2347389 4252546 Shewmr4_1973 Shewanella sp. MR-4 hypothetical protein YP_734103.1 2346730 R 60480 CDS YP_734104.1 113970311 4252547 complement(2347649..2348560) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2374 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator 2348560 4252547 Shewmr4_1974 Shewanella sp. MR-4 putative DNA-binding transcriptional regulator YP_734104.1 2347649 R 60480 CDS YP_734105.1 113970312 4252548 2348667..2349938 1 NC_008321.1 uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 2349938 4252548 Shewmr4_1975 Shewanella sp. MR-4 inner membrane transport protein YdhC YP_734105.1 2348667 D 60480 CDS YP_734106.1 113970313 4252549 complement(2350338..2350868) 1 NC_008321.1 KEGG: cps:CPS_0533 hypothetical protein; hypothetical protein 2350868 4252549 Shewmr4_1976 Shewanella sp. MR-4 hypothetical protein YP_734106.1 2350338 R 60480 CDS YP_734107.1 113970314 4252550 2351238..2352911 1 NC_008321.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 2352911 4252550 Shewmr4_1977 Shewanella sp. MR-4 ribulokinase YP_734107.1 2351238 D 60480 CDS YP_734108.1 113970315 4252551 2352913..2353608 1 NC_008321.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 2353608 araD 4252551 araD Shewanella sp. MR-4 L-ribulose-5-phosphate 4-epimerase YP_734108.1 2352913 D 60480 CDS YP_734109.1 113970316 4252552 2353647..2355149 1 NC_008321.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 2355149 4252552 Shewmr4_1979 Shewanella sp. MR-4 L-arabinose isomerase YP_734109.1 2353647 D 60480 CDS YP_734110.1 113970317 4252553 2355226..2355834 1 NC_008321.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sde:Sde_0770 putative phosphatase; HAD family hydrolase 2355834 4252553 Shewmr4_1980 Shewanella sp. MR-4 HAD family hydrolase YP_734110.1 2355226 D 60480 CDS YP_734111.1 113970318 4252554 2356070..2356786 1 NC_008321.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: ilo:IL0306 transcriptional regulator, FadR family; GntR family transcriptional regulator 2356786 4252554 Shewmr4_1981 Shewanella sp. MR-4 GntR family transcriptional regulator YP_734111.1 2356070 D 60480 CDS YP_734112.1 113970319 4252555 complement(2356875..2357822) 1 NC_008321.1 PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0789 endo-1,4-beta-xylanase D precursor; glycoside hydrolase family protein 2357822 4252555 Shewmr4_1982 Shewanella sp. MR-4 glycoside hydrolase family protein YP_734112.1 2356875 R 60480 CDS YP_734113.1 113970320 4252556 2357999..2359732 1 NC_008321.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 2359732 4252556 Shewmr4_1983 Shewanella sp. MR-4 dihydroxy-acid dehydratase YP_734113.1 2357999 D 60480 CDS YP_734114.1 113970321 4252557 2359793..2360563 1 NC_008321.1 PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: sde:Sde_0771 transcriptional regulator, GntR family; short-chain dehydrogenase/reductase SDR 2360563 4252557 Shewmr4_1984 Shewanella sp. MR-4 short-chain dehydrogenase/reductase SDR YP_734114.1 2359793 D 60480 CDS YP_734115.1 113970322 4252558 2360643..2361698 1 NC_008321.1 PFAM: Aldose 1-epimerase; KEGG: gka:GK1877 aldose 1-epimerase; aldose 1-epimerase 2361698 4252558 Shewmr4_1985 Shewanella sp. MR-4 aldose 1-epimerase YP_734115.1 2360643 D 60480 CDS YP_734116.1 113970323 4252559 2361797..2362738 1 NC_008321.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sde:Sde_0766 putative LacI-type transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 2362738 4252559 Shewmr4_1986 Shewanella sp. MR-4 periplasmic binding protein/LacI transcriptional regulator YP_734116.1 2361797 D 60480 CDS YP_734117.1 113970324 4252560 2362770..2364272 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sde:Sde_0767 putative sugar uptake ABC transporter ATP-binding protein; ABC transporter-like protein 2364272 4252560 Shewmr4_1987 Shewanella sp. MR-4 ABC transporter-like protein YP_734117.1 2362770 D 60480 CDS YP_734118.1 113970325 4252561 2364269..2365486 1 NC_008321.1 PFAM: inner-membrane translocator; KEGG: sde:Sde_0768 conserved hypothetical ABC transporter permease protein YtfT; inner-membrane translocator 2365486 4252561 Shewmr4_1988 Shewanella sp. MR-4 inner-membrane translocator YP_734118.1 2364269 D 60480 CDS YP_734119.1 113970326 4252562 2365483..2366445 1 NC_008321.1 membrane component of a putative sugar ABC transporter system; inner membrane ABC transporter permease YjfF 2366445 4252562 Shewmr4_1989 Shewanella sp. MR-4 inner membrane ABC transporter permease YjfF YP_734119.1 2365483 D 60480 CDS YP_734120.1 113970327 4252563 2366420..2367556 1 NC_008321.1 PFAM: glycoside hydrolase, family 43; KEGG: bha:BH1867 hypothetical protein; Alpha-N-arabinofuranosidase 2367556 4252563 Shewmr4_1990 Shewanella sp. MR-4 Alpha-N-arabinofuranosidase YP_734120.1 2366420 D 60480 CDS YP_734121.1 113970328 4252564 2367618..2368619 1 NC_008321.1 PFAM: glycoside hydrolase, family 43; KEGG: cac:CAC1529 beta-xylosidase, family 43 glycosyl hydrolase; Alpha-N-arabinofuranosidase 2368619 4252564 Shewmr4_1991 Shewanella sp. MR-4 Alpha-N-arabinofuranosidase YP_734121.1 2367618 D 60480 CDS YP_734122.1 113970329 4252565 2368903..2369493 1 NC_008321.1 hypothetical protein 2369493 4252565 Shewmr4_1992 Shewanella sp. MR-4 hypothetical protein YP_734122.1 2368903 D 60480 CDS YP_734123.1 113970330 4252566 complement(2369762..2372149) 1 NC_008321.1 PFAM: protein of unknown function DUF1680; KEGG: sde:Sde_0778 acetyl-CoA carboxylase, biotin carboxylase; hypothetical protein 2372149 4252566 Shewmr4_1993 Shewanella sp. MR-4 hypothetical protein YP_734123.1 2369762 R 60480 CDS YP_734124.1 113970331 4252567 complement(2372257..2373702) 1 NC_008321.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_0776 MJ0042 finger-like region; sugar (glycoside-Pentoside-hexuronide) transporter 2373702 4252567 Shewmr4_1994 Shewanella sp. MR-4 sugar (glycoside-Pentoside-hexuronide) transporter YP_734124.1 2372257 R 60480 CDS YP_734125.1 113970332 4252568 2373911..2374978 1 NC_008321.1 PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0786 arabinan endo-1,5-alpha-L-arabinosidase; arabinan endo-1,5-alpha-L-arabinosidase 2374978 4252568 Shewmr4_1995 Shewanella sp. MR-4 arabinan endo-1,5-alpha-L-arabinosidase YP_734125.1 2373911 D 60480 CDS YP_734126.1 113970333 4252569 2374981..2376885 1 NC_008321.1 PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0791 alpha-L-arabinofuranosidase; glycoside hydrolase family protein 2376885 4252569 Shewmr4_1996 Shewanella sp. MR-4 glycoside hydrolase family protein YP_734126.1 2374981 D 60480 CDS YP_734127.1 113970334 4252570 complement(2377245..2378000) 1 NC_008321.1 PFAM: protein of unknown function DUF81; KEGG: ilo:IL2350 predicted permease; hypothetical protein 2378000 4252570 Shewmr4_1997 Shewanella sp. MR-4 hypothetical protein YP_734127.1 2377245 R 60480 CDS YP_734128.1 113970335 4252571 complement(2378175..2380985) 1 NC_008321.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sde:Sde_2288 peptidase M24A, methionine aminopeptidase, subfamily 1; TonB-dependent receptor 2380985 4252571 Shewmr4_1998 Shewanella sp. MR-4 TonB-dependent receptor YP_734128.1 2378175 R 60480 CDS YP_734129.1 113970336 4252572 2381573..2384938 1 NC_008321.1 PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_3317 beta-xylosidase-like; glycoside hydrolase family protein 2384938 4252572 Shewmr4_1999 Shewanella sp. MR-4 glycoside hydrolase family protein YP_734129.1 2381573 D 60480 CDS YP_734130.1 113970337 4252573 2385038..2385889 1 NC_008321.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: ppr:PBPRB0783 hypothetical protein; hypothetical protein 2385889 4252573 Shewmr4_2000 Shewanella sp. MR-4 hypothetical protein YP_734130.1 2385038 D 60480 CDS YP_734131.1 113970338 4252574 2385989..2386897 1 NC_008321.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rso:RSc2755 hypothetical protein; SMP-30/gluconolaconase/LRE domain-containing protein 2386897 4252574 Shewmr4_2001 Shewanella sp. MR-4 SMP-30/gluconolaconase/LRE domain-containing protein YP_734131.1 2385989 D 60480 CDS YP_734132.1 113970339 4252575 complement(2387404..2388699) 1 NC_008321.1 PFAM: phage integrase family protein; KEGG: sdn:Sden_1855 phage integrase; phage integrase family protein 2388699 4252575 Shewmr4_2002 Shewanella sp. MR-4 phage integrase family protein YP_734132.1 2387404 R 60480 CDS YP_734133.1 113970340 4252576 complement(2388761..2388979) 1 NC_008321.1 KEGG: sdn:Sden_1854 hypothetical protein; hypothetical protein 2388979 4252576 Shewmr4_2003 Shewanella sp. MR-4 hypothetical protein YP_734133.1 2388761 R 60480 CDS YP_734134.1 113970341 4252577 2389151..2390728 1 NC_008321.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO2366 response regulator; response regulator receiver modulated metal dependent phosphohydrolase 2390728 4252577 Shewmr4_2004 Shewanella sp. MR-4 response regulator receiver modulated metal dependent phosphohydrolase YP_734134.1 2389151 D 60480 CDS YP_734135.1 113970342 4252578 complement(2390837..2391322) 1 NC_008321.1 KEGG: son:SO2365 hypothetical protein; hypothetical protein 2391322 4252578 Shewmr4_2005 Shewanella sp. MR-4 hypothetical protein YP_734135.1 2390837 R 60480 CDS YP_734136.1 113970343 4252579 2391546..2392982 1 NC_008321.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2392982 4252579 Shewmr4_2006 Shewanella sp. MR-4 cbb3-type cytochrome c oxidase subunit I YP_734136.1 2391546 D 60480 CDS YP_734137.1 113970344 4252580 2392995..2393621 1 NC_008321.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2393621 4252580 Shewmr4_2007 Shewanella sp. MR-4 cbb3-type cytochrome c oxidase subunit II YP_734137.1 2392995 D 60480 CDS YP_734138.1 113970345 4252581 2393633..2393809 1 NC_008321.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: son:SO2362 cytochrome c oxidase, cbb3-type, CcoQ subunit; Cbb3-type cytochrome oxidase component 2393809 4252581 Shewmr4_2008 Shewanella sp. MR-4 Cbb3-type cytochrome oxidase component YP_734138.1 2393633 D 60480 CDS YP_734139.1 113970346 4252582 2393809..2394777 1 NC_008321.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: son:SO2361 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 2394777 4252582 Shewmr4_2009 Shewanella sp. MR-4 cytochrome c oxidase, cbb3-type subunit III YP_734139.1 2393809 D 60480 CDS YP_734140.1 113970347 4252583 2394888..2395367 1 NC_008321.1 KEGG: son:SO2360 hypothetical protein; hypothetical protein 2395367 4252583 Shewmr4_2010 Shewanella sp. MR-4 hypothetical protein YP_734140.1 2394888 D 60480 CDS YP_734141.1 113970348 4252584 2395378..2397789 1 NC_008321.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: son:SO2359 cation transport ATPase, E1-E2 family; heavy metal translocating P-type ATPase 2397789 4252584 Shewmr4_2011 Shewanella sp. MR-4 heavy metal translocating P-type ATPase YP_734141.1 2395378 D 60480 CDS YP_734142.1 113970349 4252585 2397810..2398010 1 NC_008321.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: son:SO2358 cytochrome oxidase maturation protein, cbb3-type; cytochrome oxidase maturation protein, cbb3-type 2398010 4252585 Shewmr4_2012 Shewanella sp. MR-4 cytochrome oxidase maturation protein, cbb3-type YP_734142.1 2397810 D 60480 CDS YP_734143.1 113970350 4252586 2398019..2398711 1 NC_008321.1 KEGG: son:SO2357 hypothetical protein; hypothetical protein 2398711 4252586 Shewmr4_2013 Shewanella sp. MR-4 hypothetical protein YP_734143.1 2398019 D 60480 CDS YP_734144.1 113970351 4252587 2398767..2399519 1 NC_008321.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2399519 4252587 Shewmr4_2014 Shewanella sp. MR-4 fumarate/nitrate reduction transcriptional regulator YP_734144.1 2398767 D 60480 CDS YP_734145.1 113970352 4252588 2399662..2400594 1 NC_008321.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2400594 4252588 Shewmr4_2015 Shewanella sp. MR-4 universal stress protein UspE YP_734145.1 2399662 D 60480 CDS YP_734146.1 113970353 4252589 2400672..2401640 1 NC_008321.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2401640 4252589 Shewmr4_2016 Shewanella sp. MR-4 C32 tRNA thiolase YP_734146.1 2400672 D 60480 CDS YP_734147.1 113970354 4252590 complement(2401699..2402322) 1 NC_008321.1 KEGG: son:SO2353 hypothetical protein; hypothetical protein 2402322 4252590 Shewmr4_2017 Shewanella sp. MR-4 hypothetical protein YP_734147.1 2401699 R 60480 CDS YP_734148.1 113970355 4252591 complement(2402315..2403127) 1 NC_008321.1 KEGG: son:SO2352 bax protein, putative; bax protein 2403127 4252591 Shewmr4_2018 Shewanella sp. MR-4 bax protein YP_734148.1 2402315 R 60480 CDS YP_734149.1 113970356 4252592 2403445..2404368 1 NC_008321.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: son:SO2351 hypothetical protein; hypothetical protein 2404368 4252592 Shewmr4_2019 Shewanella sp. MR-4 hypothetical protein YP_734149.1 2403445 D 60480 CDS YP_734150.1 113970357 4252593 complement(2404520..2405713) 1 NC_008321.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2405713 4252593 Shewmr4_2020 Shewanella sp. MR-4 aromatic amino acid aminotransferase YP_734150.1 2404520 R 60480 CDS YP_734151.1 113970358 4252594 complement(2406630..2408063) 1 NC_008321.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 2408063 4252594 Shewmr4_2021 Shewanella sp. MR-4 glyceraldehyde-3-phosphate dehydrogenase YP_734151.1 2406630 R 60480 CDS YP_734152.1 113970359 4252595 2408270..2409160 1 NC_008321.1 KEGG: son:SO2346 hypothetical protein; hypothetical protein 2409160 4252595 Shewmr4_2022 Shewanella sp. MR-4 hypothetical protein YP_734152.1 2408270 D 60480 CDS YP_734153.1 113970360 4252596 2409373..2410383 1 NC_008321.1 KEGG: son:SO2345 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 2410383 4252596 Shewmr4_2023 Shewanella sp. MR-4 glyceraldehyde-3-phosphate dehydrogenase YP_734153.1 2409373 D 60480 CDS YP_734154.1 113970361 4252597 complement(2410509..2411021) 1 NC_008321.1 PFAM: superoxide dismutase, copper/zinc binding; KEGG: tbd:Tbd_0659 superoxide dismutase, Cu-Zn; superoxide dismutase, copper/zinc binding 2411021 4252597 Shewmr4_2024 Shewanella sp. MR-4 superoxide dismutase, copper/zinc binding YP_734154.1 2410509 R 60480 CDS YP_734155.1 113970362 4252598 complement(2411313..2412386) 1 NC_008321.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2412386 4252598 Shewmr4_2025 Shewanella sp. MR-4 quinolinate synthetase YP_734155.1 2411313 R 60480 CDS YP_734156.1 113970363 4252599 complement(2412531..2414126) 1 NC_008321.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: son:SO2341 alpha keto acid dehydrogenase complex, E2 component; dihydrolipoamide acetyltransferase 2414126 4252599 Shewmr4_2026 Shewanella sp. MR-4 dihydrolipoamide acetyltransferase YP_734156.1 2412531 R 60480 CDS YP_734157.1 113970364 4252600 complement(2414136..2415113) 1 NC_008321.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: son:SO2340 alpha keto acid dehydrogenase complex, E1 component, beta subunit; transketolase, central region 2415113 4252600 Shewmr4_2027 Shewanella sp. MR-4 transketolase, central region YP_734157.1 2414136 R 60480 CDS YP_734158.1 113970365 4252601 complement(2415117..2416295) 1 NC_008321.1 PFAM: dehydrogenase, E1 component; KEGG: son:SO2339 alpha keto acid dehydrogenase complex, E1 component, alpha subunit; 3-methyl-2-oxobutanoate dehydrogenase 2416295 4252601 Shewmr4_2028 Shewanella sp. MR-4 3-methyl-2-oxobutanoate dehydrogenase YP_734158.1 2415117 R 60480 CDS YP_734159.1 113970366 4252602 complement(2416458..2417492) 1 NC_008321.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 2417492 4252602 Shewmr4_2029 Shewanella sp. MR-4 succinylglutamate desuccinylase YP_734159.1 2416458 R 60480 CDS YP_734160.1 113970367 4252603 2417771..2418250 1 NC_008321.1 KEGG: son:SO2337 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 2418250 4252603 Shewmr4_2030 Shewanella sp. MR-4 peptide methionine sulfoxide reductase YP_734160.1 2417771 D 60480 CDS YP_734161.1 113970368 4252604 complement(2418370..2420022) 1 NC_008321.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2420022 4252604 Shewmr4_2031 Shewanella sp. MR-4 phosphoglucomutase YP_734161.1 2418370 R 60480 CDS YP_734162.1 113970369 4252605 complement(2420094..2420645) 1 NC_008321.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 2420645 4252605 Shewmr4_2032 Shewanella sp. MR-4 replication initiation regulator SeqA YP_734162.1 2420094 R 60480 CDS YP_734163.1 113970370 4252606 2420917..2421717 1 NC_008321.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: son:SO2333 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold domain-containing protein 2421717 4252606 Shewmr4_2033 Shewanella sp. MR-4 alpha/beta hydrolase fold domain-containing protein YP_734163.1 2420917 D 60480 CDS YP_734164.1 113970371 4252607 2421819..2422040 1 NC_008321.1 KEGG: son:SO2332 hypothetical protein; hypothetical protein 2422040 4252607 Shewmr4_2034 Shewanella sp. MR-4 hypothetical protein YP_734164.1 2421819 D 60480 CDS YP_734165.1 113970372 4252608 2422052..2422324 1 NC_008321.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: son:SO2331 hypothetical protein; LexA regulated protein 2422324 4252608 Shewmr4_2035 Shewanella sp. MR-4 LexA regulated protein YP_734165.1 2422052 D 60480 CDS YP_734166.1 113970373 4252609 2422380..2422907 1 NC_008321.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 2422907 4252609 Shewmr4_2036 Shewanella sp. MR-4 flavodoxin FldA YP_734166.1 2422380 D 60480 CDS YP_734167.1 113970374 4252610 2422969..2424168 1 NC_008321.1 KEGG: son:SO2329 hypothetical protein; hypothetical protein 2424168 4252610 Shewmr4_2037 Shewanella sp. MR-4 hypothetical protein YP_734167.1 2422969 D 60480 CDS YP_734168.1 113970375 4252611 2424213..2424773 1 NC_008321.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2424773 4252611 Shewmr4_2038 Shewanella sp. MR-4 elongation factor P YP_734168.1 2424213 D 60480 CDS YP_734169.1 113970376 4252612 complement(2425100..2426482) 1 NC_008321.1 PFAM: Na+/H+ antiporter NhaC; KEGG: son:SO2481 hypothetical protein; Na+/H+ antiporter NhaC 2426482 4252612 Shewmr4_2039 Shewanella sp. MR-4 Na+/H+ antiporter NhaC YP_734169.1 2425100 R 60480 CDS YP_734170.1 113970377 4252613 2427223..2428437 1 NC_008321.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2428437 4252613 Shewmr4_2040 Shewanella sp. MR-4 aminotransferase AlaT YP_734170.1 2427223 D 60480 CDS YP_734171.1 113970378 4252614 2428692..2429279 1 NC_008321.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: son:SO2484 hypothetical protein; hypothetical protein 2429279 4252614 Shewmr4_2041 Shewanella sp. MR-4 hypothetical protein YP_734171.1 2428692 D 60480 CDS YP_734172.1 113970379 4252615 2429305..2430645 1 NC_008321.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2430645 4252615 Shewmr4_2042 Shewanella sp. MR-4 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_734172.1 2429305 D 60480 CDS YP_734173.1 113970380 4252616 complement(2430716..2431357) 1 NC_008321.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 2431357 4252616 Shewmr4_2043 Shewanella sp. MR-4 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_734173.1 2430716 R 60480 CDS YP_734174.1 113970381 4252617 complement(2431378..2433204) 1 NC_008321.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2433204 4252617 Shewmr4_2044 Shewanella sp. MR-4 phosphogluconate dehydratase YP_734174.1 2431378 R 60480 CDS YP_734175.1 113970382 4252618 complement(2433217..2433915) 1 NC_008321.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: son:SO2488 6-phosphogluconolactonase; 6-phosphogluconolactonase 2433915 4252618 Shewmr4_2045 Shewanella sp. MR-4 6-phosphogluconolactonase YP_734175.1 2433217 R 60480 CDS YP_734176.1 113970383 4252619 complement(2433925..2435397) 1 NC_008321.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2435397 4252619 Shewmr4_2046 Shewanella sp. MR-4 glucose-6-phosphate 1-dehydrogenase YP_734176.1 2433925 R 60480 CDS YP_734177.1 113970384 4252620 2435710..2436564 1 NC_008321.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2436564 4252620 Shewmr4_2047 Shewanella sp. MR-4 DNA-binding transcriptional regulator HexR YP_734177.1 2435710 D 60480 CDS YP_734178.1 113970385 4252621 2436749..2438188 1 NC_008321.1 KEGG: son:SO2491 pyruvate kinase II; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase; pyruvate kinase 2438188 4252621 Shewmr4_2048 Shewanella sp. MR-4 pyruvate kinase YP_734178.1 2436749 D 60480 CDS YP_734179.1 113970386 4252622 complement(2438328..2440607) 1 NC_008321.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2440607 4252622 Shewmr4_2049 Shewanella sp. MR-4 acyl-CoA dehydrogenase YP_734179.1 2438328 R 60480 CDS YP_734180.1 113970387 4252623 complement(2440623..2441261) 1 NC_008321.1 PFAM: regulatory protein, TetR; KEGG: son:SO2493 transcriptional regulator, TetR family; TetR family transcriptional regulator 2441261 4252623 Shewmr4_2050 Shewanella sp. MR-4 TetR family transcriptional regulator YP_734180.1 2440623 R 60480 CDS YP_734181.1 113970388 4252624 2441480..2443342 1 NC_008321.1 PFAM: peptidase M2, peptidyl-dipeptidase A; KEGG: son:SO2494 zinc-dependent metallopeptidase; peptidyl-dipeptidase A 2443342 4252624 Shewmr4_2051 Shewanella sp. MR-4 peptidyl-dipeptidase A YP_734181.1 2441480 D 60480 CDS YP_734182.1 113970389 4252625 complement(2443513..2444103) 1 NC_008321.1 PFAM: Smr protein/MutS2; KEGG: son:SO2495 Smr domain protein; Smr protein/MutS2 2444103 4252625 Shewmr4_2052 Shewanella sp. MR-4 Smr protein/MutS2 YP_734182.1 2443513 R 60480 CDS YP_734183.1 113970390 4252626 2444236..2444814 1 NC_008321.1 KEGG: son:SO2495.1 hypothetical protein; hypothetical protein 2444814 4252626 Shewmr4_2053 Shewanella sp. MR-4 hypothetical protein YP_734183.1 2444236 D 60480 CDS YP_734184.1 113970391 4252627 2444842..2445336 1 NC_008321.1 PFAM: SEC-C motif domain protein; KEGG: son:SO2497 conserved hypothetical protein; SecC motif-containing protein 2445336 4252627 Shewmr4_2054 Shewanella sp. MR-4 SecC motif-containing protein YP_734184.1 2444842 D 60480 CDS YP_734185.1 113970392 4252628 complement(2445416..2447599) 1 NC_008321.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO2498 sensory box protein; diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 2447599 4252628 Shewmr4_2055 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) YP_734185.1 2445416 R 60480 CDS YP_734186.1 113970393 4252629 complement(2447791..2448078) 1 NC_008321.1 KEGG: son:SO2499 hypothetical protein; hypothetical protein 2448078 4252629 Shewmr4_2056 Shewanella sp. MR-4 hypothetical protein YP_734186.1 2447791 R 60480 CDS YP_734187.1 113970394 4252630 complement(2448317..2448805) 1 NC_008321.1 KEGG: son:SO2500 hypothetical protein; hypothetical protein 2448805 4252630 Shewmr4_2057 Shewanella sp. MR-4 hypothetical protein YP_734187.1 2448317 R 60480 CDS YP_734188.1 113970395 4252631 complement(2449521..2450189) 1 NC_008321.1 KEGG: son:SO2501 radical activating enzyme; radical activating enzyme 2450189 4252631 Shewmr4_2058 Shewanella sp. MR-4 radical activating enzyme YP_734188.1 2449521 R 60480 CDS YP_734189.1 113970396 4252632 2450378..2451097 1 NC_008321.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC 2451097 4252632 Shewmr4_2059 Shewanella sp. MR-4 queuosine biosynthesis protein QueC YP_734189.1 2450378 D 60480 CDS YP_734190.1 113970397 4252633 2451094..2451708 1 NC_008321.1 PFAM: Rhomboid family protein; KEGG: son:SO2504 hypothetical protein; rhomboid family protein 2451708 4252633 Shewmr4_2060 Shewanella sp. MR-4 rhomboid family protein YP_734190.1 2451094 D 60480 CDS YP_734191.1 113970398 4252634 complement(2451855..2453876) 1 NC_008321.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2453876 4252634 Shewmr4_2061 Shewanella sp. MR-4 excinuclease ABC subunit B YP_734191.1 2451855 R 60480 CDS YP_734192.1 113970399 4252635 complement(2454588..2454791) 1 NC_008321.1 hypothetical protein 2454791 4252635 Shewmr4_2062 Shewanella sp. MR-4 hypothetical protein YP_734192.1 2454588 R 60480 CDS YP_734193.1 113970400 4252636 2456132..2458036 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO2507 GGDEF domain protein; diguanylate cyclase/phosphodiesterase 2458036 4252636 Shewmr4_2063 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase YP_734193.1 2456132 D 60480 CDS YP_734194.1 113970401 4252637 2458162..2458740 1 NC_008321.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: son:SO2508 RnfAE/NqrDE family protein; Na(+)-translocating NADH-quinone reductase subunit E 2458740 4252637 Shewmr4_2064 Shewanella sp. MR-4 Na(+)-translocating NADH-quinone reductase subunit E YP_734194.1 2458162 D 60480 CDS YP_734195.1 113970402 4252638 2458741..2459322 1 NC_008321.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2459322 4252638 Shewmr4_2065 Shewanella sp. MR-4 electron transport complex protein RnfB YP_734195.1 2458741 D 60480 CDS YP_734196.1 113970403 4252639 2459326..2461755 1 NC_008321.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2461755 4252639 Shewmr4_2066 Shewanella sp. MR-4 electron transport complex protein RnfC YP_734196.1 2459326 D 60480 CDS YP_734197.1 113970404 4252640 2461836..2462885 1 NC_008321.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 2462885 rnfD 4252640 rnfD Shewanella sp. MR-4 electron transport complex protein RnfD YP_734197.1 2461836 D 60480 CDS YP_734198.1 113970405 4252641 2462951..2463577 1 NC_008321.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 2463577 4252641 Shewmr4_2068 Shewanella sp. MR-4 electron transport complex protein RnfG YP_734198.1 2462951 D 60480 CDS YP_734199.1 113970406 4252642 2463570..2464268 1 NC_008321.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex RsxE subunit 2464268 4252642 Shewmr4_2069 Shewanella sp. MR-4 electron transport complex RsxE subunit YP_734199.1 2463570 D 60480 CDS YP_734200.1 113970407 4252643 2464335..2464976 1 NC_008321.1 KEGG: son:SO2514 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; DNA-(apurinic or apyrimidinic site) lyase / endonuclease III 2464976 4252643 Shewmr4_2070 Shewanella sp. MR-4 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III YP_734200.1 2464335 D 60480 CDS YP_734201.1 113970408 4252644 complement(2465138..2465404) 1 NC_008321.1 KEGG: son:SO2515 hypothetical protein; hypothetical protein 2465404 4252644 Shewmr4_2071 Shewanella sp. MR-4 hypothetical protein YP_734201.1 2465138 R 60480 CDS YP_734202.1 113970409 4252645 complement(2465553..2466470) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VPA0602 putative transcription activator NahR; LysR family transcriptional regulator 2466470 4252645 Shewmr4_2072 Shewanella sp. MR-4 LysR family transcriptional regulator YP_734202.1 2465553 R 60480 CDS YP_734203.1 113970410 4252646 2466667..2467899 1 NC_008321.1 PFAM: Radical SAM domain protein; KEGG: vpa:VPA0601 putative arylsulfatase regulator; radical SAM domain-containing protein 2467899 4252646 Shewmr4_2073 Shewanella sp. MR-4 radical SAM domain-containing protein YP_734203.1 2466667 D 60480 CDS YP_734204.1 113970411 4252647 2467905..2470274 1 NC_008321.1 PFAM: sulfatase; KEGG: vpa:VPA0600 putative arylsulfatase AtsD; sulfatase 2470274 4252647 Shewmr4_2074 Shewanella sp. MR-4 sulfatase YP_734204.1 2467905 D 60480 CDS YP_734205.1 113970412 4252648 complement(2470493..2470957) 1 NC_008321.1 KEGG: ilo:IL2513 hypothetical protein; hypothetical protein 2470957 4252648 Shewmr4_2075 Shewanella sp. MR-4 hypothetical protein YP_734205.1 2470493 R 60480 CDS YP_734206.1 113970413 4252649 complement(2470957..2472126) 1 NC_008321.1 PFAM: PepSY-associated TM helix domain protein; KEGG: ilo:IL2512 uncharacterized iron-regulated membrane protein; PepSY-associated TM helix domain-containing protein 2472126 4252649 Shewmr4_2076 Shewanella sp. MR-4 PepSY-associated TM helix domain-containing protein YP_734206.1 2470957 R 60480 CDS YP_734207.1 113970414 4252650 2472356..2473177 1 NC_008321.1 PFAM: beta-lactamase domain protein; KEGG: eli:ELI_06065 Zn-dependent hydrolase, glyoxylase family protein; beta-lactamase domain-containing protein 2473177 4252650 Shewmr4_2077 Shewanella sp. MR-4 beta-lactamase domain-containing protein YP_734207.1 2472356 D 60480 CDS YP_734208.1 113970415 4252651 2473432..2474388 1 NC_008321.1 KEGG: son:SO2517 hypothetical protein; hypothetical protein 2474388 4252651 Shewmr4_2078 Shewanella sp. MR-4 hypothetical protein YP_734208.1 2473432 D 60480 CDS YP_734209.1 113970416 4252652 complement(2474399..2475277) 1 NC_008321.1 KEGG: son:SO2518 hypothetical protein; hypothetical protein 2475277 4252652 Shewmr4_2079 Shewanella sp. MR-4 hypothetical protein YP_734209.1 2474399 R 60480 CDS YP_734210.1 113970417 4252653 complement(2475513..2476736) 1 NC_008321.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: son:SO2519 transcriptional regulator, AraC family; AraC family transcriptional regulator 2476736 4252653 Shewmr4_2080 Shewanella sp. MR-4 AraC family transcriptional regulator YP_734210.1 2475513 R 60480 CDS YP_734211.1 113970418 4252654 complement(2476736..2477701) 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2520 GGDEF domain protein; diguanylate cyclase 2477701 4252654 Shewmr4_2081 Shewanella sp. MR-4 diguanylate cyclase YP_734211.1 2476736 R 60480 CDS YP_734212.1 113970419 4252655 2478353..2481181 1 NC_008321.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2523 hypothetical TonB-dependent receptor; TonB-dependent receptor 2481181 4252655 Shewmr4_2082 Shewanella sp. MR-4 TonB-dependent receptor YP_734212.1 2478353 D 60480 CDS YP_734213.1 113970420 4252656 2481206..2483143 1 NC_008321.1 PFAM: phytase; KEGG: son:SO2524 phytase, putative; 3-phytase 2483143 4252656 Shewmr4_2083 Shewanella sp. MR-4 3-phytase YP_734213.1 2481206 D 60480 CDS YP_734214.1 113970421 4252657 2483373..2484965 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2525 ABC transporter, ATP-binding protein; ABC transporter-like protein 2484965 4252657 Shewmr4_2084 Shewanella sp. MR-4 ABC transporter-like protein YP_734214.1 2483373 D 60480 CDS YP_734215.1 113970422 4252658 complement(2485135..2485584) 1 NC_008321.1 PFAM: Activator of Hsp90 ATPase family protein; KEGG: dar:Daro_4073 hypothetical protein; activator of Hsp90 ATPase family protein 2485584 4252658 Shewmr4_2085 Shewanella sp. MR-4 activator of Hsp90 ATPase family protein YP_734215.1 2485135 R 60480 CDS YP_734216.1 113970423 4252659 complement(2485696..2486850) 1 NC_008321.1 KEGG: hch:HCH_01547 hypothetical protein; hypothetical protein 2486850 4252659 Shewmr4_2086 Shewanella sp. MR-4 hypothetical protein YP_734216.1 2485696 R 60480 CDS YP_734217.1 113970424 4252660 2487203..2488837 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; Hpt domain protein; KEGG: son:SO2127 response regulator; response regulator receiver modulated diguanylate cyclase 2488837 4252660 Shewmr4_2087 Shewanella sp. MR-4 response regulator receiver modulated diguanylate cyclase YP_734217.1 2487203 D 60480 CDS YP_734218.1 113970425 4252661 complement(2489070..2490125) 1 NC_008321.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: son:SO2126 protein-glutamate methylesterase CheB; response regulator receiver modulated CheB methylesterase 2490125 4252661 Shewmr4_2088 Shewanella sp. MR-4 response regulator receiver modulated CheB methylesterase YP_734218.1 2489070 R 60480 CDS YP_734219.1 113970426 4252662 complement(2490129..2490749) 1 NC_008321.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 2490749 4252662 Shewmr4_2089 Shewanella sp. MR-4 chemoreceptor glutamine deamidase CheD YP_734219.1 2490129 R 60480 CDS YP_734220.1 113970427 4252663 complement(2490750..2491580) 1 NC_008321.1 PFAM: MCP methyltransferase, CheR-type; KEGG: son:SO2124 chemotaxis protein methyltransferase CheR; MCP methyltransferase, CheR-type 2491580 4252663 Shewmr4_2090 Shewanella sp. MR-4 MCP methyltransferase, CheR-type YP_734220.1 2490750 R 60480 CDS YP_734221.1 113970428 4252664 complement(2491581..2493551) 1 NC_008321.1 PFAM: chemotaxis sensory transducer; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: son:SO2123 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2493551 4252664 Shewmr4_2091 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_734221.1 2491581 R 60480 CDS YP_734222.1 113970429 4252665 complement(2493557..2494069) 1 NC_008321.1 PFAM: CheW domain protein; KEGG: son:SO2122 purine-binding chemotaxis protein CheW; CheW protein 2494069 4252665 Shewmr4_2092 Shewanella sp. MR-4 CheW protein YP_734222.1 2493557 R 60480 CDS YP_734223.1 113970430 4252666 complement(2494084..2496294) 1 NC_008321.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: son:SO2121 chemotaxis protein CheA; CheA signal transduction histidine kinases 2496294 4252666 Shewmr4_2093 Shewanella sp. MR-4 CheA signal transduction histidine kinases YP_734223.1 2494084 R 60480 CDS YP_734224.1 113970431 4252667 complement(2496313..2496678) 1 NC_008321.1 PFAM: response regulator receiver; KEGG: son:SO2120 chemotaxis protein CheY; response regulator receiver protein 2496678 4252667 Shewmr4_2094 Shewanella sp. MR-4 response regulator receiver protein YP_734224.1 2496313 R 60480 CDS YP_734225.1 113970432 4252668 complement(2496679..2498382) 1 NC_008321.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: son:SO2119 response regulator; response regulator receiver protein 2498382 4252668 Shewmr4_2095 Shewanella sp. MR-4 response regulator receiver protein YP_734225.1 2496679 R 60480 CDS YP_734226.1 113970433 4252669 complement(2498383..2498676) 1 NC_008321.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: son:SO2118 SpoIIAA family protein; anti-sigma-factor antagonist 2498676 4252669 Shewmr4_2096 Shewanella sp. MR-4 anti-sigma-factor antagonist YP_734226.1 2498383 R 60480 CDS YP_734227.1 113970434 4252670 complement(2498692..2499828) 1 NC_008321.1 PFAM: chemotaxis sensory transducer; KEGG: son:SO2117 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2499828 4252670 Shewmr4_2097 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_734227.1 2498692 R 60480 CDS YP_734228.1 113970435 4252671 2500055..2502796 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: son:SO2116 acetyltransferase, GNAT family; CoA-binding domain-containing protein 2502796 4252671 Shewmr4_2098 Shewanella sp. MR-4 CoA-binding domain-containing protein YP_734228.1 2500055 D 60480 CDS YP_734229.1 113970436 4252672 complement(2502920..2504503) 1 NC_008321.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr8233 efflux pump protein FarB; EmrB/QacA family drug resistance transporter 2504503 4252672 Shewmr4_2099 Shewanella sp. MR-4 EmrB/QacA family drug resistance transporter YP_734229.1 2502920 R 60480 CDS YP_734230.1 113970437 4252673 complement(2504500..2505555) 1 NC_008321.1 PFAM: secretion protein HlyD family protein; KEGG: ret:RHE_CH03357 probable protein secretion protein, HlyD family; secretion protein HlyD family protein 2505555 4252673 Shewmr4_2100 Shewanella sp. MR-4 secretion protein HlyD family protein YP_734230.1 2504500 R 60480 CDS YP_734231.1 113970438 4252674 complement(2505611..2506039) 1 NC_008321.1 PFAM: regulatory protein, MarR; KEGG: ret:RHE_CH03358 probable transcriptional regulator protein, MarR family; MarR family transcriptional regulator 2506039 4252674 Shewmr4_2101 Shewanella sp. MR-4 MarR family transcriptional regulator YP_734231.1 2505611 R 60480 CDS YP_734232.1 113970439 4252675 complement(2506435..2507361) 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2049 GGDEF family protein; diguanylate cyclase 2507361 4252675 Shewmr4_2102 Shewanella sp. MR-4 diguanylate cyclase YP_734232.1 2506435 R 60480 CDS YP_734233.1 113970440 4252676 complement(2507517..2509142) 1 NC_008321.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: son:SO2048 membrane protein, putative; sulfatase 2509142 4252676 Shewmr4_2103 Shewanella sp. MR-4 sulfatase YP_734233.1 2507517 R 60480 CDS YP_734234.1 113970441 4252677 complement(2509396..2511489) 1 NC_008321.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO2047 prolyl oligopeptidase family protein; prolyl oligopeptidase 2511489 4252677 Shewmr4_2104 Shewanella sp. MR-4 prolyl oligopeptidase YP_734234.1 2509396 R 60480 CDS YP_734235.1 113970442 4252678 complement(2512038..2512499) 1 NC_008321.1 PFAM: regulatory protein, MarR; KEGG: son:SO2046 transcriptional regulator, MarR family; MarR family transcriptional regulator 2512499 4252678 Shewmr4_2105 Shewanella sp. MR-4 MarR family transcriptional regulator YP_734235.1 2512038 R 60480 CDS YP_734236.1 113970443 4252679 complement(2512499..2513713) 1 NC_008321.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: son:SO2045 cation efflux family protein; cation diffusion facilitator family transporter 2513713 4252679 Shewmr4_2106 Shewanella sp. MR-4 cation diffusion facilitator family transporter YP_734236.1 2512499 R 60480 CDS YP_734237.1 113970444 4252680 2514443..2514853 1 NC_008321.1 KEGG: son:SO2044 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2514853 4252680 Shewmr4_2107 Shewanella sp. MR-4 lactoylglutathione lyase YP_734237.1 2514443 D 60480 CDS YP_734238.1 113970445 4252681 complement(2514946..2515593) 1 NC_008321.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 2515593 4252681 Shewmr4_2108 Shewanella sp. MR-4 putative sulfite oxidase subunit YedZ YP_734238.1 2514946 R 60480 CDS YP_734239.1 113970446 4252682 complement(2515700..2516734) 1 NC_008321.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 2516734 4252682 Shewmr4_2109 Shewanella sp. MR-4 putative sulfite oxidase subunit YedY YP_734239.1 2515700 R 60480 CDS YP_734240.1 113970447 4252683 2517009..2518574 1 NC_008321.1 PFAM: protein of unknown function DUF195; KEGG: son:SO2041 hypothetical protein; hypothetical protein 2518574 4252683 Shewmr4_2110 Shewanella sp. MR-4 hypothetical protein YP_734240.1 2517009 D 60480 CDS YP_734241.1 113970448 4252684 2518668..2520593 1 NC_008321.1 PFAM: Lytic transglycosylase, catalytic; KEGG: son:SO2040 soluble lytic murein transglycosylase, putative; lytic transglycosylase, catalytic 2520593 4252684 Shewmr4_2111 Shewanella sp. MR-4 lytic transglycosylase, catalytic YP_734241.1 2518668 D 60480 CDS YP_734242.1 113970449 4252685 2520808..2521509 1 NC_008321.1 PFAM: EAL domain protein; KEGG: son:SO2039 hypothetical protein; diguanylate phosphodiesterase 2521509 4252685 Shewmr4_2112 Shewanella sp. MR-4 diguanylate phosphodiesterase YP_734242.1 2520808 D 60480 CDS YP_734243.1 113970450 4252686 complement(2521822..2522475) 1 NC_008321.1 KEGG: sdn:Sden_3355 hypothetical protein; hypothetical protein 2522475 4252686 Shewmr4_2113 Shewanella sp. MR-4 hypothetical protein YP_734243.1 2521822 R 60480 CDS YP_734244.1 113970451 4252687 complement(2523170..2524093) 1 NC_008321.1 PFAM: transposase, IS4 family protein; KEGG: son:SO3296 ISSod12, transposase; IS4 family transposase 2524093 4252687 Shewmr4_2114 Shewanella sp. MR-4 IS4 family transposase YP_734244.1 2523170 R 60480 CDS YP_734245.1 113970452 4252688 complement(2524342..2525178) 1 NC_008321.1 KEGG: csa:Csal_0736 hypothetical protein; hypothetical protein 2525178 4252688 Shewmr4_2115 Shewanella sp. MR-4 hypothetical protein YP_734245.1 2524342 R 60480 CDS YP_734246.1 113970453 4252689 2525483..2525878 1 NC_008321.1 KEGG: dde:Dde_2987 transposase; transposase 2525878 4252689 Shewmr4_2116 Shewanella sp. MR-4 transposase YP_734246.1 2525483 D 60480 CDS YP_734247.1 113970454 4252690 2525908..2526711 1 NC_008321.1 PFAM: Integrase, catalytic region; KEGG: pcr:Pcryo_0715 Integrase, catalytic region; integrase catalytic subunit 2526711 4252690 Shewmr4_2117 Shewanella sp. MR-4 integrase catalytic subunit YP_734247.1 2525908 D 60480 CDS YP_734248.1 113970455 4252691 complement(2526860..2528332) 1 NC_008321.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: plt:Plut_1820 RNA-directed DNA polymerase; RNA-directed DNA polymerase 2528332 4252691 Shewmr4_2118 Shewanella sp. MR-4 RNA-directed DNA polymerase YP_734248.1 2526860 R 60480 CDS YP_734249.1 113970456 4252692 2529734..2530216 1 NC_008321.1 KEGG: ava:Ava_4004 hypothetical protein; hypothetical protein 2530216 4252692 Shewmr4_2119 Shewanella sp. MR-4 hypothetical protein YP_734249.1 2529734 D 60480 CDS YP_734250.1 113970457 4252693 2530695..2531714 1 NC_008321.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sdn:Sden_3235 DNA-directed DNA polymerase; DNA-repair protein 2531714 4252693 Shewmr4_2120 Shewanella sp. MR-4 DNA-repair protein YP_734250.1 2530695 D 60480 CDS YP_734251.1 113970458 4252694 complement(2531982..2532917) 1 NC_008321.1 KEGG: son:SO2225 hypothetical protein; hypothetical protein 2532917 4252694 Shewmr4_2121 Shewanella sp. MR-4 hypothetical protein YP_734251.1 2531982 R 60480 CDS YP_734252.1 113970459 4252695 complement(2532973..2533431) 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2224 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 2533431 4252695 Shewmr4_2122 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_734252.1 2532973 R 60480 CDS YP_734253.1 113970460 4252696 complement(2533569..2535632) 1 NC_008321.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: son:SO2223 peptidase, putative; peptidase S9 prolyl oligopeptidase 2535632 4252696 Shewmr4_2123 Shewanella sp. MR-4 peptidase S9 prolyl oligopeptidase YP_734253.1 2533569 R 60480 CDS YP_734254.1 113970461 4252697 complement(2535895..2537439) 1 NC_008321.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: son:SO2222 fumarate hydratase, class I, anaerobic, putative; fumarase 2537439 4252697 Shewmr4_2124 Shewanella sp. MR-4 fumarase YP_734254.1 2535895 R 60480 CDS YP_734255.1 113970462 4252698 2537561..2538964 1 NC_008321.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: son:SO2221 para-aminobenzoate synthase, component I; aminodeoxychorismate synthase subunit I 2538964 4252698 Shewmr4_2125 Shewanella sp. MR-4 aminodeoxychorismate synthase subunit I YP_734255.1 2537561 D 60480 CDS YP_734256.1 113970463 4252699 2538990..2539577 1 NC_008321.1 PFAM: NUDIX hydrolase; KEGG: son:SO2220 MutT/nudix family protein; NUDIX hydrolase 2539577 4252699 Shewmr4_2126 Shewanella sp. MR-4 NUDIX hydrolase YP_734256.1 2538990 D 60480 CDS YP_734257.1 113970464 4252700 complement(2539602..2539937) 1 NC_008321.1 KEGG: son:SO2219 hypothetical protein; hypothetical protein 2539937 4252700 Shewmr4_2127 Shewanella sp. MR-4 hypothetical protein YP_734257.1 2539602 R 60480 CDS YP_734258.1 113970465 4252701 2540089..2541489 1 NC_008321.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2541489 asnC 4252701 asnC Shewanella sp. MR-4 asparaginyl-tRNA synthetase YP_734258.1 2540089 D 60480 CDS YP_734259.1 113970466 4252702 2541753..2542763 1 NC_008321.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 2542763 ddl 4252702 ddl Shewanella sp. MR-4 D-alanyl-alanine synthetase A YP_734259.1 2541753 D 60480 CDS YP_734260.1 113970467 4252703 complement(2542816..2545074) 1 NC_008321.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; KEGG: son:SO2216 sensory box protein; diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 2545074 4252703 Shewmr4_2130 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_734260.1 2542816 R 60480 CDS YP_734261.1 113970468 4252704 complement(2545225..2546439) 1 NC_008321.1 PFAM: Fmu (Sun) domain protein; KEGG: son:SO2215 sun protein, putative; Fmu (Sun) domain-containing protein 2546439 4252704 Shewmr4_2131 Shewanella sp. MR-4 Fmu (Sun) domain-containing protein YP_734261.1 2545225 R 60480 CDS YP_734262.1 113970469 4252705 complement(2546592..2547863) 1 NC_008321.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sdn:Sden_2027 glucose/galactose transporter; glucose/galactose transporter 2547863 4252705 Shewmr4_2132 Shewanella sp. MR-4 glucose/galactose transporter YP_734262.1 2546592 R 60480 CDS YP_734263.1 113970470 4252706 complement(2547989..2549611) 1 NC_008321.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: son:SO2213 alpha-glucosidase; alpha amylase catalytic subunit 2549611 4252706 Shewmr4_2133 Shewanella sp. MR-4 alpha amylase catalytic subunit YP_734263.1 2547989 R 60480 CDS YP_734264.1 113970471 4252707 2550110..2552929 1 NC_008321.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2162 TonB dependent receptor-related protein; TonB-dependent receptor 2552929 4252707 Shewmr4_2134 Shewanella sp. MR-4 TonB-dependent receptor YP_734264.1 2550110 D 60480 CDS YP_734265.1 113970472 4252708 2553059..2555056 1 NC_008321.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: sdn:Sden_2031 alpha amylase, catalytic region; alpha amylase catalytic subunit 2555056 4252708 Shewmr4_2135 Shewanella sp. MR-4 alpha amylase catalytic subunit YP_734265.1 2553059 D 60480 CDS YP_734266.1 113970473 4252709 2555134..2557248 1 NC_008321.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: son:SO2156 alpha amylase family protein; alpha amylase catalytic subunit 2557248 4252709 Shewmr4_2136 Shewanella sp. MR-4 alpha amylase catalytic subunit YP_734266.1 2555134 D 60480 CDS YP_734267.1 113970474 4252710 2557367..2557750 1 NC_008321.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2155 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 2557750 4252710 Shewmr4_2137 Shewanella sp. MR-4 glyoxalase/bleomycin resistance protein/dioxygenase YP_734267.1 2557367 D 60480 CDS YP_734268.1 113970475 4252711 2557960..2558169 1 NC_008321.1 KEGG: cps:CPS_2680 hypothetical protein; hypothetical protein 2558169 4252711 Shewmr4_2138 Shewanella sp. MR-4 hypothetical protein YP_734268.1 2557960 D 60480 CDS YP_734269.1 113970476 4252712 complement(2558779..2560632) 1 NC_008321.1 KEGG: mth:MTH551 DNA helicase II related protein; hypothetical protein 2560632 4252712 Shewmr4_2139 Shewanella sp. MR-4 hypothetical protein YP_734269.1 2558779 R 60480 CDS YP_734270.1 113970477 4252713 complement(2560749..2561627) 1 NC_008321.1 KEGG: lpn:lpg0982 hypothetical protein; hypothetical protein 2561627 4252713 Shewmr4_2140 Shewanella sp. MR-4 hypothetical protein YP_734270.1 2560749 R 60480 CDS YP_734271.1 113970478 4252714 complement(2562418..2563266) 1 NC_008321.1 KEGG: son:SO2529 hypothetical protein; hypothetical protein 2563266 4252714 Shewmr4_2141 Shewanella sp. MR-4 hypothetical protein YP_734271.1 2562418 R 60480 CDS YP_734272.1 113970479 4252715 complement(2563476..2563967) 1 NC_008321.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 2563967 def 4252715 def Shewanella sp. MR-4 peptide deformylase YP_734272.1 2563476 R 60480 CDS YP_734273.1 113970480 4252716 2564160..2564618 1 NC_008321.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: son:SO2532 methylated-DNA--protein-cysteine methyltransferase, putative; methylated-DNA-(protein)-cysteine S-methyltransferase 2564618 4252716 Shewmr4_2143 Shewanella sp. MR-4 methylated-DNA-(protein)-cysteine S-methyltransferase YP_734273.1 2564160 D 60480 CDS YP_734274.1 113970481 4252717 2564748..2565560 1 NC_008321.1 KEGG: son:SO2533 hypothetical protein; hypothetical protein 2565560 4252717 Shewmr4_2144 Shewanella sp. MR-4 hypothetical protein YP_734274.1 2564748 D 60480 CDS YP_734275.1 113970482 4252718 complement(2565726..2566505) 1 NC_008321.1 PFAM: glutamine amidotransferase, class-II; KEGG: son:SO2535 hypothetical amidotransferase; glutamine amidotransferase, class-II 2566505 4252718 Shewmr4_2145 Shewanella sp. MR-4 glutamine amidotransferase, class-II YP_734275.1 2565726 R 60480 CDS YP_734276.1 113970483 4252719 2566749..2569196 1 NC_008321.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2569196 fadE 4252719 fadE Shewanella sp. MR-4 acyl-CoA dehydrogenase YP_734276.1 2566749 D 60480 CDS YP_734277.1 113970484 4252720 complement(2569315..2571327) 1 NC_008321.1 PFAM: sodium/hydrogen exchanger; KEGG: son:SO2537 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger 2571327 4252720 Shewmr4_2147 Shewanella sp. MR-4 sodium/hydrogen exchanger YP_734277.1 2569315 R 60480 CDS YP_734278.1 113970485 4252721 complement(2572130..2572837) 1 NC_008321.1 TetR family transcriptional regulator 2572837 4252721 Shewmr4_2148 Shewanella sp. MR-4 TetR family transcriptional regulator YP_734278.1 2572130 R 60480 CDS YP_734279.1 113970486 4252722 2572908..2573792 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ret:RHE_CH02498 probable transcriptional regulator protein, LysR family; LysR family transcriptional regulator 2573792 4252722 Shewmr4_2149 Shewanella sp. MR-4 LysR family transcriptional regulator YP_734279.1 2572908 D 60480 CDS YP_734280.1 113970487 4252723 complement(2573879..2575006) 1 NC_008321.1 KEGG: son:SO1412 hypothetical protein; hypothetical protein 2575006 4252723 Shewmr4_2150 Shewanella sp. MR-4 hypothetical protein YP_734280.1 2573879 R 60480 CDS YP_734281.1 113970488 4252724 complement(2575091..2576335) 1 NC_008321.1 hypothetical protein 2576335 4252724 Shewmr4_2151 Shewanella sp. MR-4 hypothetical protein YP_734281.1 2575091 R 60480 CDS YP_734282.1 113970489 4252725 complement(2576719..2577072) 1 NC_008321.1 KEGG: son:SO3623 tetraheme cytochrome c; tetraheme cytochrome c 2577072 4252725 Shewmr4_2152 Shewanella sp. MR-4 tetraheme cytochrome c YP_734282.1 2576719 R 60480 CDS YP_734283.1 113970490 4252726 complement(2577100..2578620) 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: son:SO3624 flavocytochrome c flavin subunit; flavocytochrome c 2578620 4252726 Shewmr4_2153 Shewanella sp. MR-4 flavocytochrome c YP_734283.1 2577100 R 60480 CDS YP_734284.1 113970491 4252727 complement(2578929..2579909) 1 NC_008321.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: vpa:VP0028 zinc-binding alcohol dehydrogenase; alcohol dehydrogenase 2579909 4252727 Shewmr4_2154 Shewanella sp. MR-4 alcohol dehydrogenase YP_734284.1 2578929 R 60480 CDS YP_734285.1 113970492 4252728 2580979..2583072 1 NC_008321.1 KEGG: dar:Daro_0675 PAS:GGDEF; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 2583072 4252728 Shewmr4_2155 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_734285.1 2580979 D 60480 CDS YP_734286.1 113970493 4252729 complement(2584112..2585536) 1 NC_008321.1 KEGG: son:SO2557 hypothetical protein; hypothetical protein 2585536 4252729 Shewmr4_2156 Shewanella sp. MR-4 hypothetical protein YP_734286.1 2584112 R 60480 CDS YP_734287.1 113970494 4252730 complement(2585670..2586398) 1 NC_008321.1 KEGG: son:SO2559 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2586398 4252730 Shewmr4_2157 Shewanella sp. MR-4 DNA polymerase III subunit epsilon YP_734287.1 2585670 R 60480 CDS YP_734288.1 113970495 4252731 2586469..2586945 1 NC_008321.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2586945 rnhA 4252731 rnhA Shewanella sp. MR-4 ribonuclease H YP_734288.1 2586469 D 60480 CDS YP_734289.1 113970496 4252732 complement(2586967..2587881) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2561 transcriptional regulator, LysR family; LysR family transcriptional regulator 2587881 4252732 Shewmr4_2159 Shewanella sp. MR-4 LysR family transcriptional regulator YP_734289.1 2586967 R 60480 CDS YP_734290.1 113970497 4252733 complement(2587906..2588640) 1 NC_008321.1 PFAM: Methyltransferase type 11; KEGG: son:SO2562 hypothetical protein; type 11 methyltransferase 2588640 4252733 Shewmr4_2160 Shewanella sp. MR-4 type 11 methyltransferase YP_734290.1 2587906 R 60480 CDS YP_734291.1 113970498 4252734 2588725..2589612 1 NC_008321.1 PFAM: beta-lactamase domain protein; KEGG: son:SO2563 metallo-beta-lactamase family protein; hydroxyacylglutathione hydrolase 2589612 4252734 Shewmr4_2161 Shewanella sp. MR-4 hydroxyacylglutathione hydrolase YP_734291.1 2588725 D 60480 CDS YP_734292.1 113970499 4252735 2589864..2591411 1 NC_008321.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: son:SO2564 transglycosylase, Slt family; MltD domain-containing protein 2591411 4252735 Shewmr4_2162 Shewanella sp. MR-4 MltD domain-containing protein YP_734292.1 2589864 D 60480 CDS YP_734293.1 113970500 4252736 complement(2591640..2592299) 1 NC_008321.1 KEGG: son:SO2565 intracellular proteinase inhibitor domain protein; intracellular proteinase inhibitor domain-containing protein 2592299 4252736 Shewmr4_2163 Shewanella sp. MR-4 intracellular proteinase inhibitor domain-containing protein YP_734293.1 2591640 R 60480 CDS YP_734294.1 113970501 4252737 complement(2592302..2594122) 1 NC_008321.1 PFAM: AsmA family protein; KEGG: son:SO2566 AsmA protein; AsmA family protein 2594122 4252737 Shewmr4_2164 Shewanella sp. MR-4 AsmA family protein YP_734294.1 2592302 R 60480 CDS YP_734295.1 113970502 4252738 complement(2594165..2594659) 1 NC_008321.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 2594659 4252738 Shewmr4_2165 Shewanella sp. MR-4 ribonuclease activity regulator protein RraA YP_734295.1 2594165 R 60480 CDS YP_734296.1 113970503 4252739 2594880..2595200 1 NC_008321.1 KEGG: son:SO2569 hypothetical protein; hypothetical protein 2595200 4252739 Shewmr4_2166 Shewanella sp. MR-4 hypothetical protein YP_734296.1 2594880 D 60480 CDS YP_734297.1 113970504 4252740 complement(2595389..2597179) 1 NC_008321.1 PFAM: protein of unknown function DUF885; KEGG: son:SO2570 lipoprotein, putative; hypothetical protein 2597179 4252740 Shewmr4_2167 Shewanella sp. MR-4 hypothetical protein YP_734297.1 2595389 R 60480 CDS YP_734298.1 113970505 4252741 2597492..2598955 1 NC_008321.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2571 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase domain-containing protein 2598955 4252741 Shewmr4_2168 Shewanella sp. MR-4 DEAD/DEAH box helicase domain-containing protein YP_734298.1 2597492 D 60480 CDS YP_734299.1 113970506 4252742 2599001..2599501 1 NC_008321.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO2572 peptidyl-prolyl cis-trans isomerase B; peptidyl-prolyl cis-trans isomerase, cyclophilin type 2599501 4252742 Shewmr4_2169 Shewanella sp. MR-4 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_734299.1 2599001 D 60480 CDS YP_734300.1 113970507 4252743 complement(2599746..2600204) 1 NC_008321.1 PFAM: protein of unknown function UPF0153; KEGG: son:SO2573 hypothetical protein; hypothetical protein 2600204 4252743 Shewmr4_2170 Shewanella sp. MR-4 hypothetical protein YP_734300.1 2599746 R 60480 CDS YP_734301.1 113970508 4252744 complement(2600243..2601244) 1 NC_008321.1 KEGG: cps:CPS_3516 putative transglycosylase; putative transglycosylase 2601244 4252744 Shewmr4_2171 Shewanella sp. MR-4 putative transglycosylase YP_734301.1 2600243 R 60480 CDS YP_734302.1 113970509 4252745 complement(2601269..2601547) 1 NC_008321.1 PFAM: protein of unknown function DUF709; KEGG: son:SO2575 hypothetical protein; hypothetical protein 2601547 4252745 Shewmr4_2172 Shewanella sp. MR-4 hypothetical protein YP_734302.1 2601269 R 60480 CDS YP_734303.1 113970510 4252746 2601671..2602336 1 NC_008321.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 2602336 minC 4252746 minC Shewanella sp. MR-4 septum formation inhibitor YP_734303.1 2601671 D 60480 CDS YP_734304.1 113970511 4252747 2602364..2603173 1 NC_008321.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO2577 septum site-determining protein MinD; septum site-determining protein MinD 2603173 4252747 Shewmr4_2174 Shewanella sp. MR-4 septum site-determining protein MinD YP_734304.1 2602364 D 60480 CDS YP_734305.1 113970512 4252748 2603176..2603433 1 NC_008321.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 2603433 minE 4252748 minE Shewanella sp. MR-4 cell division topological specificity factor MinE YP_734305.1 2603176 D 60480 CDS YP_734306.1 113970513 4252749 complement(2603622..2604776) 1 NC_008321.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: son:SO2580 ribonuclease D; ribonuclease D 2604776 4252749 Shewmr4_2176 Shewanella sp. MR-4 ribonuclease D YP_734306.1 2603622 R 60480 CDS YP_734307.1 113970514 4252750 complement(2604802..2606475) 1 NC_008321.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2606475 4252750 Shewmr4_2177 Shewanella sp. MR-4 long-chain-fatty-acid--CoA ligase YP_734307.1 2604802 R 60480 CDS YP_734308.1 113970515 4252751 complement(2606675..2607541) 1 NC_008321.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: son:SO2582 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold domain-containing protein 2607541 4252751 Shewmr4_2178 Shewanella sp. MR-4 alpha/beta hydrolase fold domain-containing protein YP_734308.1 2606675 R 60480 CDS YP_734309.1 113970516 4252752 complement(2607563..2608375) 1 NC_008321.1 KEGG: son:SO2583 hypothetical protein; hypothetical protein 2608375 4252752 Shewmr4_2179 Shewanella sp. MR-4 hypothetical protein YP_734309.1 2607563 R 60480 CDS YP_734310.1 113970517 4252753 complement(2608507..2609214) 1 NC_008321.1 KEGG: son:SO2584 hypothetical protein; hypothetical protein 2609214 4252753 Shewmr4_2180 Shewanella sp. MR-4 hypothetical protein YP_734310.1 2608507 R 60480 CDS YP_734311.1 113970518 4252754 complement(2609207..2609515) 1 NC_008321.1 KEGG: son:SO2585 hypothetical protein; hypothetical protein 2609515 4252754 Shewmr4_2181 Shewanella sp. MR-4 hypothetical protein YP_734311.1 2609207 R 60480 CDS YP_734312.1 113970519 4252755 complement(2609658..2610368) 1 NC_008321.1 PFAM: peptidase M22, glycoprotease; KEGG: son:SO2586 hypothetical protein; peptidase M22, glycoprotease 2610368 4252755 Shewmr4_2182 Shewanella sp. MR-4 peptidase M22, glycoprotease YP_734312.1 2609658 R 60480 CDS YP_734313.1 113970520 4252756 2610741..2611739 1 NC_008321.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2611739 4252756 Shewmr4_2183 Shewanella sp. MR-4 delta-aminolevulinic acid dehydratase YP_734313.1 2610741 D 60480 CDS YP_734314.1 113970521 4252757 complement(2611832..2612737) 1 NC_008321.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 2612737 4252757 Shewmr4_2184 Shewanella sp. MR-4 bifunctional methionine sulfoxide reductase B/A protein YP_734314.1 2611832 R 60480 CDS YP_734315.1 113970522 4252758 2613115..2613954 1 NC_008321.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: son:SO2589 isopenicillin-N synthase; 2OG-Fe(II) oxygenase 2613954 4252758 Shewmr4_2185 Shewanella sp. MR-4 2OG-Fe(II) oxygenase YP_734315.1 2613115 D 60480 CDS YP_734316.1 113970523 4252759 2614091..2615032 1 NC_008321.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 2615032 rbgA 4252759 rbgA Shewanella sp. MR-4 ribosomal biogenesis GTPase YP_734316.1 2614091 D 60480 CDS YP_734317.1 113970524 4252760 complement(2615346..2615786) 1 NC_008321.1 KEGG: pae:PA4801 hypothetical protein; hypothetical protein 2615786 4252760 Shewmr4_2187 Shewanella sp. MR-4 hypothetical protein YP_734317.1 2615346 R 60480 CDS YP_734318.1 113970525 4252761 complement(2616019..2616585) 1 NC_008321.1 hypothetical protein 2616585 4252761 Shewmr4_2188 Shewanella sp. MR-4 hypothetical protein YP_734318.1 2616019 R 60480 CDS YP_734319.1 113970526 4252762 complement(2617240..2617755) 1 NC_008321.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: son:SO2208 phosphotyrosine protein phosphatase; protein tyrosine phosphatase 2617755 4252762 Shewmr4_2189 Shewanella sp. MR-4 protein tyrosine phosphatase YP_734319.1 2617240 R 60480 CDS YP_734320.1 113970527 4252763 complement(2617776..2618798) 1 NC_008321.1 KEGG: sdn:Sden_0075 hypothetical protein; hypothetical protein 2618798 4252763 Shewmr4_2190 Shewanella sp. MR-4 hypothetical protein YP_734320.1 2617776 R 60480 CDS YP_734321.1 113970528 4252764 complement(2618901..2619809) 1 NC_008321.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 2619809 4252764 Shewmr4_2191 Shewanella sp. MR-4 DNA ligase YP_734321.1 2618901 R 60480 CDS YP_734322.1 113970529 4252765 2620063..2620434 1 NC_008321.1 PFAM: diacylglycerol kinase; KEGG: son:SO2203 diacylglycerol kinase; diacylglycerol kinase 2620434 4252765 Shewmr4_2192 Shewanella sp. MR-4 diacylglycerol kinase YP_734322.1 2620063 D 60480 CDS YP_734323.1 113970530 4252766 complement(2620583..2621443) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2202 transcriptional regulator, LysR family; LysR family transcriptional regulator 2621443 4252766 Shewmr4_2193 Shewanella sp. MR-4 LysR family transcriptional regulator YP_734323.1 2620583 R 60480 CDS YP_734324.1 113970531 4252767 2621552..2622004 1 NC_008321.1 PFAM: protein of unknown function DUF413; KEGG: son:SO2201 hypothetical protein; hypothetical protein 2622004 4252767 Shewmr4_2194 Shewanella sp. MR-4 hypothetical protein YP_734324.1 2621552 D 60480 CDS YP_734325.1 113970532 4252768 2622025..2623035 1 NC_008321.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO2200 ribosomal protein S6 modification protein, putative; alpha-L-glutamate ligase 2623035 4252768 Shewmr4_2195 Shewanella sp. MR-4 alpha-L-glutamate ligase YP_734325.1 2622025 D 60480 CDS YP_734326.1 113970533 4252769 2623288..2624211 1 NC_008321.1 KEGG: son:SO2199 hypothetical protein; hypothetical protein 2624211 4252769 Shewmr4_2196 Shewanella sp. MR-4 hypothetical protein YP_734326.1 2623288 D 60480 CDS YP_734327.1 113970534 4252770 complement(2624267..2625892) 1 NC_008321.1 PFAM: peptidase M28; KEGG: son:SO2198 hypothetical aminopeptidase; peptidase M28 2625892 4252770 Shewmr4_2197 Shewanella sp. MR-4 peptidase M28 YP_734327.1 2624267 R 60480 CDS YP_734328.1 113970535 4252771 2626053..2627078 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2197 GGDEF family protein; diguanylate cyclase 2627078 4252771 Shewmr4_2198 Shewanella sp. MR-4 diguanylate cyclase YP_734328.1 2626053 D 60480 CDS YP_734329.1 113970536 4252772 complement(2627202..2627891) 1 NC_008321.1 TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: son:SO2196 LPXTG-site transpeptidase family protein; sortase family protein 2627891 4252772 Shewmr4_2199 Shewanella sp. MR-4 sortase family protein YP_734329.1 2627202 R 60480 CDS YP_734330.1 113970537 4252773 complement(2627895..2630174) 1 NC_008321.1 PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: son:SO2195 inter-alpha-trypsin inhibitor domain protein; vault protein inter-alpha-trypsin subunit 2630174 4252773 Shewmr4_2200 Shewanella sp. MR-4 vault protein inter-alpha-trypsin subunit YP_734330.1 2627895 R 60480 CDS YP_734331.1 113970538 4252774 complement(2630220..2631014) 1 NC_008321.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO2194 OmpA family protein; OmpA/MotB domain-containing protein 2631014 4252774 Shewmr4_2201 Shewanella sp. MR-4 OmpA/MotB domain-containing protein YP_734331.1 2630220 R 60480 CDS YP_734332.1 113970539 4252775 2631260..2631952 1 NC_008321.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2193 DNA-binding response regulator; two component transcriptional regulator 2631952 4252775 Shewmr4_2202 Shewanella sp. MR-4 two component transcriptional regulator YP_734332.1 2631260 D 60480 CDS YP_734333.1 113970540 4252776 2631985..2634144 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2192 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 2634144 4252776 Shewmr4_2203 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_734333.1 2631985 D 60480 CDS YP_734334.1 113970541 4252777 2634269..2635468 1 NC_008321.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 2635468 4252777 Shewmr4_2204 Shewanella sp. MR-4 cystathionine beta-lyase YP_734334.1 2634269 D 60480 CDS YP_734335.1 113970542 4252778 complement(2635581..2636096) 1 NC_008321.1 PFAM: CreA family protein; KEGG: son:SO2190 creA protein; CreA family protein 2636096 4252778 Shewmr4_2205 Shewanella sp. MR-4 CreA family protein YP_734335.1 2635581 R 60480 CDS YP_734336.1 113970543 4252779 complement(2636106..2637560) 1 NC_008321.1 KEGG: son:SO2189 conserved hypothetical protein; putative chaperone 2637560 4252779 Shewmr4_2206 Shewanella sp. MR-4 putative chaperone YP_734336.1 2636106 R 60480 CDS YP_734337.1 113970544 4252780 2637885..2640047 1 NC_008321.1 PFAM: Polyphosphate kinase; KEGG: vvu:VV10464 polyphosphate kinase; polyphosphate kinase 2640047 4252780 Shewmr4_2207 Shewanella sp. MR-4 polyphosphate kinase YP_734337.1 2637885 D 60480 CDS YP_734338.1 113970545 4252781 2640090..2641646 1 NC_008321.1 PFAM: Ppx/GppA phosphatase; KEGG: son:SO2185 exopolyphosphatase; Ppx/GppA phosphatase 2641646 4252781 Shewmr4_2208 Shewanella sp. MR-4 Ppx/GppA phosphatase YP_734338.1 2640090 D 60480 CDS YP_734339.1 113970546 4252782 complement(2641726..2642595) 1 NC_008321.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: sdn:Sden_2375 ion transport protein; Ion transport protein 2642595 4252782 Shewmr4_2209 Shewanella sp. MR-4 Ion transport protein YP_734339.1 2641726 R 60480 CDS YP_734340.1 113970547 4252783 2642753..2643268 1 NC_008321.1 KEGG: son:SO2183 hypothetical protein; hypothetical protein 2643268 4252783 Shewmr4_2210 Shewanella sp. MR-4 hypothetical protein YP_734340.1 2642753 D 60480 CDS YP_734341.1 113970548 4252784 2643366..2643980 1 NC_008321.1 PFAM: protein of unknown function DUF991; KEGG: son:SO2182 hypothetical protein; hypothetical protein 2643980 4252784 Shewmr4_2211 Shewanella sp. MR-4 hypothetical protein YP_734341.1 2643366 D 60480 CDS YP_734342.1 113970549 4252785 2644209..2644469 1 NC_008321.1 KEGG: son:SO2181 hypothetical protein; hypothetical protein 2644469 4252785 Shewmr4_2212 Shewanella sp. MR-4 hypothetical protein YP_734342.1 2644209 D 60480 CDS YP_734343.1 113970550 4252786 2644666..2645022 1 NC_008321.1 KEGG: xcv:XCV0313 hypothetical protein; hypothetical protein 2645022 4252786 Shewmr4_2213 Shewanella sp. MR-4 hypothetical protein YP_734343.1 2644666 D 60480 CDS YP_734344.1 113970551 4252787 complement(2645143..2646048) 1 NC_008321.1 PFAM: peptidase M23B; KEGG: son:SO2180 peptidase, M23/M37 family; peptidase M23B 2646048 4252787 Shewmr4_2214 Shewanella sp. MR-4 peptidase M23B YP_734344.1 2645143 R 60480 CDS YP_734345.1 113970552 4252788 complement(2646116..2646991) 1 NC_008321.1 KEGG: son:SO2179 hypothetical protein; hypothetical protein 2646991 4252788 Shewmr4_2215 Shewanella sp. MR-4 hypothetical protein YP_734345.1 2646116 R 60480 CDS YP_734346.1 113970553 4252789 2647574..2648575 1 NC_008321.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: son:SO2178 cytochrome c551 peroxidase; cytochrome-c peroxidase 2648575 4252789 Shewmr4_2216 Shewanella sp. MR-4 cytochrome-c peroxidase YP_734346.1 2647574 D 60480 CDS YP_734347.1 113970554 4252790 complement(2648714..2649742) 1 NC_008321.1 PFAM: 37kDa nucleoid-associated protein; KEGG: son:SO2177 hypothetical protein; nucleoid-associated protein NdpA 2649742 4252790 Shewmr4_2217 Shewanella sp. MR-4 nucleoid-associated protein NdpA YP_734347.1 2648714 R 60480 CDS YP_734348.2 161349954 4252791 2649820..2650038 1 NC_008321.1 PFAM: protein of unknown function DUF1414; KEGG: son:SO2176 hypothetical protein; hypothetical protein 2650038 4252791 Shewmr4_2218 Shewanella sp. MR-4 hypothetical protein YP_734348.2 2649820 D 60480 CDS YP_734349.1 113970556 4252792 2650105..2651895 1 NC_008321.1 PFAM: sulfatase; KEGG: son:SO2175 hypothetical protein; sulfatase 2651895 4252792 Shewmr4_2219 Shewanella sp. MR-4 sulfatase YP_734349.1 2650105 D 60480 CDS YP_734350.1 113970557 4252793 complement(2652023..2653135) 1 NC_008321.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bxe:Bxe_B0715 NADH-flavin oxidoreductase / NADH oxidase familyprotein; NADH:flavin oxidoreductase/NADH oxidase 2653135 4252793 Shewmr4_2220 Shewanella sp. MR-4 NADH:flavin oxidoreductase/NADH oxidase YP_734350.1 2652023 R 60480 CDS YP_734351.1 113970558 4252794 2653237..2654103 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sde:Sde_2875 transcriptional regulator, LysR family; LysR family transcriptional regulator 2654103 4252794 Shewmr4_2221 Shewanella sp. MR-4 LysR family transcriptional regulator YP_734351.1 2653237 D 60480 CDS YP_734352.1 113970559 4252795 2654286..2655224 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2174 cyclic nucleotide phosphodiesterase, putative; diguanylate cyclase 2655224 4252795 Shewmr4_2222 Shewanella sp. MR-4 diguanylate cyclase YP_734352.1 2654286 D 60480 CDS YP_734353.1 113970560 4252796 complement(2655427..2656092) 1 NC_008321.1 two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL 2656092 4252796 Shewmr4_2223 Shewanella sp. MR-4 transcriptional regulator NarL YP_734353.1 2655427 R 60480 CDS YP_734354.1 113970561 4252797 complement(2656085..2657854) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: eca:ECA2029 nitrate/nitrite sensor kinase; nitrate/nitrite sensor protein NarX 2657854 4252797 Shewmr4_2224 Shewanella sp. MR-4 nitrate/nitrite sensor protein NarX YP_734354.1 2656085 R 60480 CDS YP_734355.1 113970562 4252798 2658257..2659675 1 NC_008321.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_1843 nitrite extrusion protein; nitrite transporter 2659675 4252798 Shewmr4_2225 Shewanella sp. MR-4 nitrite transporter YP_734355.1 2658257 D 60480 CDS YP_734356.1 113970563 4252799 2660082..2663846 1 NC_008321.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: eci:UTI89_C1421 respiratory nitrate reductase 1 alpha chain; respiratory nitrate reductase subunit alpha apoprotein 2663846 4252799 Shewmr4_2226 Shewanella sp. MR-4 respiratory nitrate reductase subunit alpha apoprotein YP_734356.1 2660082 D 60480 CDS YP_734357.1 113970564 4252800 2663849..2665387 1 NC_008321.1 KEGG: eca:ECA2032 respiratory nitrate reductase 1 beta chain; TIGRFAM: nitrate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; respiratory nitrate reductase subunit beta 2665387 4252800 Shewmr4_2227 Shewanella sp. MR-4 respiratory nitrate reductase subunit beta YP_734357.1 2663849 D 60480 CDS YP_734358.1 113970565 4252801 2665393..2666103 1 NC_008321.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: eca:ECA2033 respiratory nitrate reductase 1 delta chain; respiratory nitrate reductase chaperone NarJ 2666103 4252801 Shewmr4_2228 Shewanella sp. MR-4 respiratory nitrate reductase chaperone NarJ YP_734358.1 2665393 D 60480 CDS YP_734359.1 113970566 4252802 2666106..2666789 1 NC_008321.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: stt:t1670 respiratory nitrate reductase 1 gamma chain; respiratory nitrate reductase subunit gamma 2666789 4252802 Shewmr4_2229 Shewanella sp. MR-4 respiratory nitrate reductase subunit gamma YP_734359.1 2666106 D 60480 CDS YP_734360.1 113970567 4252803 2666953..2667312 1 NC_008321.1 KEGG: son:SO2174 cyclic nucleotide phosphodiesterase, putative; hypothetical protein 2667312 4252803 Shewmr4_2230 Shewanella sp. MR-4 hypothetical protein YP_734360.1 2666953 D 60480 CDS YP_734361.1 113970568 4252804 complement(2667600..2668535) 1 NC_008321.1 hypothetical protein 2668535 4252804 Shewmr4_2231 Shewanella sp. MR-4 hypothetical protein YP_734361.1 2667600 R 60480 CDS YP_734362.1 113970569 4252805 2669115..2669333 1 NC_008321.1 PFAM: transposase IS3/IS911 family protein; KEGG: ilo:IL1626 transposon related ORF, HTH transcriptional regulator; transposase IS3/IS911 family protein 2669333 4252805 Shewmr4_2232 Shewanella sp. MR-4 transposase IS3/IS911 family protein YP_734362.1 2669115 D 60480 CDS YP_734363.1 113970570 4252806 complement(2670121..2671137) 1 NC_008321.1 PFAM: Fimbrial protein; KEGG: bpm:BURPS1710b_2230 type-1 fimbrial protein, A subunit; fimbrial protein 2671137 4252806 Shewmr4_2234 Shewanella sp. MR-4 fimbrial protein YP_734363.1 2670121 R 60480 CDS YP_734364.1 113970571 4252807 complement(2671234..2673693) 1 NC_008321.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: xfa:XF0081 outer membrane usher protein precursor; fimbrial biogenesis outer membrane usher protein 2673693 4252807 Shewmr4_2235 Shewanella sp. MR-4 fimbrial biogenesis outer membrane usher protein YP_734364.1 2671234 R 60480 CDS YP_734365.1 113970572 4252808 complement(2673696..2674397) 1 NC_008321.1 PFAM: pili assembly chaperone; KEGG: rme:Rmet_4251 pili assembly chaperone; pili assembly chaperone 2674397 4252808 Shewmr4_2236 Shewanella sp. MR-4 pili assembly chaperone YP_734365.1 2673696 R 60480 CDS YP_734366.1 113970573 4252809 complement(2674465..2675013) 1 NC_008321.1 PFAM: Fimbrial protein; KEGG: reu:Reut_A1694 fimbrial protein; fimbrial protein 2675013 4252809 Shewmr4_2237 Shewanella sp. MR-4 fimbrial protein YP_734366.1 2674465 R 60480 CDS YP_734367.1 113970574 4252810 2676245..2677228 1 NC_008321.1 PFAM: Fimbrial protein; KEGG: bpm:BURPS1710b_2230 type-1 fimbrial protein, A subunit; fimbrial protein 2677228 4252810 Shewmr4_2238 Shewanella sp. MR-4 fimbrial protein YP_734367.1 2676245 D 60480 CDS YP_734368.1 113970575 4252811 2678296..2679498 1 NC_008321.1 PFAM: transposase, IS4 family protein; KEGG: sdn:Sden_3325 transposase, IS4; IS4 family transposase 2679498 4252811 Shewmr4_2240 Shewanella sp. MR-4 IS4 family transposase YP_734368.1 2678296 D 60480 CDS YP_734369.1 113970576 4252812 complement(2679723..2680718) 1 NC_008321.1 PFAM: Fimbrial protein; KEGG: rme:Rmet_4253 fimbrial protein; fimbrial protein 2680718 4252812 Shewmr4_2241 Shewanella sp. MR-4 fimbrial protein YP_734369.1 2679723 R 60480 CDS YP_734370.1 113970577 4252813 2680892..2681614 1 NC_008321.1 PFAM: EAL domain protein; KEGG: son:SOA0109 hypothetical protein; diguanylate phosphodiesterase 2681614 4252813 Shewmr4_2242 Shewanella sp. MR-4 diguanylate phosphodiesterase YP_734370.1 2680892 D 60480 CDS YP_734371.1 113970578 4252814 2682324..2684504 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: sdn:Sden_1435 GGDEF domain; diguanylate cyclase 2684504 4252814 Shewmr4_2243 Shewanella sp. MR-4 diguanylate cyclase YP_734371.1 2682324 D 60480 CDS YP_734372.1 113970579 4252815 complement(2684501..2685967) 1 NC_008321.1 KEGG: son:SO2024 hypothetical protein; hypothetical protein 2685967 4252815 Shewmr4_2244 Shewanella sp. MR-4 hypothetical protein YP_734372.1 2684501 R 60480 CDS YP_734373.1 113970580 4252816 2686132..2686668 1 NC_008321.1 KEGG: son:SO2022 hypothetical protein; hypothetical protein 2686668 4252816 Shewmr4_2245 Shewanella sp. MR-4 hypothetical protein YP_734373.1 2686132 D 60480 CDS YP_734374.1 113970581 4252817 complement(2686847..2687737) 1 NC_008321.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2687737 nadE 4252817 nadE Shewanella sp. MR-4 NAD synthetase YP_734374.1 2686847 R 60480 CDS YP_734375.1 113970582 4252818 complement(2687887..2689191) 1 NC_008321.1 PFAM: PfkB domain protein; KEGG: son:SO2020 inosine-guanosine kinase; inosine-guanosine kinase 2689191 4252818 Shewmr4_2247 Shewanella sp. MR-4 inosine-guanosine kinase YP_734375.1 2687887 R 60480 CDS YP_734376.1 113970583 4252819 complement(2689382..2690428) 1 NC_008321.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 2690428 hemH 4252819 hemH Shewanella sp. MR-4 ferrochelatase YP_734376.1 2689382 R 60480 CDS YP_734377.1 113970584 4252820 complement(2690508..2691152) 1 NC_008321.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2691152 adk 4252820 adk Shewanella sp. MR-4 adenylate kinase YP_734377.1 2690508 R 60480 CDS YP_734378.1 113970585 4252821 complement(2691294..2692157) 1 NC_008321.1 PFAM: Thioredoxin domain; KEGG: son:SO2017 putative thioredoxin-like protein; thioredoxin domain-containing protein 2692157 4252821 Shewmr4_2250 Shewanella sp. MR-4 thioredoxin domain-containing protein YP_734378.1 2691294 R 60480 CDS YP_734379.1 113970586 4252822 complement(2692275..2694188) 1 NC_008321.1 molecular chaperone; heat shock protein 90 2694188 4252822 Shewmr4_2251 Shewanella sp. MR-4 heat shock protein 90 YP_734379.1 2692275 R 60480 CDS YP_734380.1 113970587 4252823 complement(2694479..2695078) 1 NC_008321.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 2695078 recR 4252823 recR Shewanella sp. MR-4 recombination protein RecR YP_734380.1 2694479 R 60480 CDS YP_734381.1 113970588 4252824 complement(2695091..2695426) 1 NC_008321.1 PFAM: conserved hypothetical protein 103; KEGG: son:SO2014 conserved hypothetical protein TIGR00103; hypothetical protein 2695426 4252824 Shewmr4_2253 Shewanella sp. MR-4 hypothetical protein YP_734381.1 2695091 R 60480 CDS YP_734382.1 113970589 4252825 complement(2695591..2698806) 1 NC_008321.1 KEGG: son:SO2013 DNA polymerase III, gamma and tau subunits; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 2698806 4252825 Shewmr4_2254 Shewanella sp. MR-4 DNA polymerase III subunits gamma and tau YP_734382.1 2695591 R 60480 CDS YP_734383.1 113970590 4252826 complement(2698936..2699487) 1 NC_008321.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 2699487 4252826 Shewmr4_2255 Shewanella sp. MR-4 adenine phosphoribosyltransferase YP_734383.1 2698936 R 60480 CDS YP_734384.1 113970591 4252827 complement(2699668..2700036) 1 NC_008321.1 PFAM: protein of unknown function DUF454; KEGG: son:SO2011 hypothetical protein; hypothetical protein 2700036 4252827 Shewmr4_2256 Shewanella sp. MR-4 hypothetical protein YP_734384.1 2699668 R 60480 CDS YP_734385.1 113970592 4252828 complement(2700137..2700259) 1 NC_008321.1 KEGG: son:SO2010 hypothetical protein; hypothetical protein 2700259 4252828 Shewmr4_2257 Shewanella sp. MR-4 hypothetical protein YP_734385.1 2700137 R 60480 CDS YP_734386.1 113970593 4252829 complement(2700416..2701156) 1 NC_008321.1 KEGG: son:SO2009 hypothetical protein; hypothetical protein 2701156 4252829 Shewmr4_2258 Shewanella sp. MR-4 hypothetical protein YP_734386.1 2700416 R 60480 CDS YP_734387.1 113970594 4252830 complement(2701156..2701995) 1 NC_008321.1 PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: son:SO2008 hypothetical protein; hypothetical protein 2701995 4252830 Shewmr4_2259 Shewanella sp. MR-4 hypothetical protein YP_734387.1 2701156 R 60480 CDS YP_734388.1 113970595 4252831 complement(2702130..2702561) 1 NC_008321.1 KEGG: son:SO2007 hypothetical protein; hypothetical protein 2702561 4252831 Shewmr4_2260 Shewanella sp. MR-4 hypothetical protein YP_734388.1 2702130 R 60480 CDS YP_734389.1 113970596 4252832 2702821..2703768 1 NC_008321.1 PFAM: dihydrouridine synthase, DuS; KEGG: son:SO2006 NifR3/Smm1 family protein; dihydrouridine synthase, DuS 2703768 4252832 Shewmr4_2261 Shewanella sp. MR-4 dihydrouridine synthase, DuS YP_734389.1 2702821 D 60480 CDS YP_734390.1 113970597 4252833 2703932..2704291 1 NC_008321.1 KEGG: son:SO2005 DksA-type zinc finger protein; TraR/DksA family transcriptional regulator 2704291 4252833 Shewmr4_2262 Shewanella sp. MR-4 TraR/DksA family transcriptional regulator YP_734390.1 2703932 D 60480 CDS YP_734391.1 113970598 4252834 complement(2704608..2707256) 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2469 putative iron complex outermembrane recepter protein; TonB-dependent receptor 2707256 4252834 Shewmr4_2263 Shewanella sp. MR-4 TonB-dependent receptor YP_734391.1 2704608 R 60480 CDS YP_734392.1 113970599 4252835 complement(2707704..2709425) 1 NC_008321.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 2709425 ushA 4252835 ushA Shewanella sp. MR-4 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor YP_734392.1 2707704 R 60480 CDS YP_734393.1 113970600 4252836 complement(2709790..2710455) 1 NC_008321.1 PFAM: phospholipase/Carboxylesterase; KEGG: son:SO1999 phospholipase/carboxylesterase family protein; carboxylesterase 2710455 4252836 Shewmr4_2265 Shewanella sp. MR-4 carboxylesterase YP_734393.1 2709790 R 60480 CDS YP_734394.1 113970601 4252837 complement(2710508..2710735) 1 NC_008321.1 KEGG: son:SO1998 hypothetical protein; hypothetical protein 2710735 4252837 Shewmr4_2266 Shewanella sp. MR-4 hypothetical protein YP_734394.1 2710508 R 60480 CDS YP_734395.1 113970602 4252838 2711122..2713050 1 NC_008321.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1997 peptidase, M1 family; peptidase M1, membrane alanine aminopeptidase 2713050 4252838 Shewmr4_2267 Shewanella sp. MR-4 peptidase M1, membrane alanine aminopeptidase YP_734395.1 2711122 D 60480 CDS YP_734396.1 113970603 4252839 complement(2713339..2713827) 1 NC_008321.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1995 peptidyl-prolyl cis-trans isomerase, FkbP family; peptidylprolyl isomerase, FKBP-type 2713827 4252839 Shewmr4_2268 Shewanella sp. MR-4 peptidylprolyl isomerase, FKBP-type YP_734396.1 2713339 R 60480 CDS YP_734397.1 113970604 4252840 complement(2714036..2715310) 1 NC_008321.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO1994 membrane-bound lytic transglycolase-related protein; lytic murein transglycosylase 2715310 4252840 Shewmr4_2269 Shewanella sp. MR-4 lytic murein transglycosylase YP_734397.1 2714036 R 60480 CDS YP_734398.1 113970605 4252841 2715735..2716094 1 NC_008321.1 KEGG: son:SO1991 hypothetical protein; hypothetical protein 2716094 4252841 Shewmr4_2270 Shewanella sp. MR-4 hypothetical protein YP_734398.1 2715735 D 60480 CDS YP_734399.1 113970606 4252842 2716152..2716793 1 NC_008321.1 KEGG: son:SO1990 hypothetical protein; hypothetical protein 2716793 4252842 Shewmr4_2271 Shewanella sp. MR-4 hypothetical protein YP_734399.1 2716152 D 60480 CDS YP_734400.1 113970607 4252843 complement(2716896..2717840) 1 NC_008321.1 PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO1989 chemotaxis protein CheV; response regulator receiver modulated CheW protein 2717840 4252843 Shewmr4_2272 Shewanella sp. MR-4 response regulator receiver modulated CheW protein YP_734400.1 2716896 R 60480 CDS YP_734401.1 113970608 4252844 complement(2718042..2718656) 1 NC_008321.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO1988 hypothetical methyltransferase; type 11 methyltransferase 2718656 4252844 Shewmr4_2273 Shewanella sp. MR-4 type 11 methyltransferase YP_734401.1 2718042 R 60480 CDS YP_734402.1 113970609 4252845 2718753..2719304 1 NC_008321.1 PFAM: peptidase S16, lon domain protein; KEGG: son:SO1987 ATP-dependent protease La (LON) domain protein; peptidase S16, lon domain-containing protein 2719304 4252845 Shewmr4_2274 Shewanella sp. MR-4 peptidase S16, lon domain-containing protein YP_734402.1 2718753 D 60480 CDS YP_734403.1 113970610 4252846 2719426..2720094 1 NC_008321.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO1986 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 2720094 4252846 Shewmr4_2275 Shewanella sp. MR-4 ECF subfamily RNA polymerase sigma-24 factor YP_734403.1 2719426 D 60480 CDS YP_734404.1 113970611 4252847 2720087..2720782 1 NC_008321.1 TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: son:SO1985 transcriptional activator, putative; anti-ECFsigma factor, ChrR 2720782 4252847 Shewmr4_2276 Shewanella sp. MR-4 anti-ECFsigma factor, ChrR YP_734404.1 2720087 D 60480 CDS YP_734405.1 113970612 4252848 2721298..2721480 1 NC_008321.1 KEGG: sdn:Sden_2145 hypothetical protein; hypothetical protein 2721480 4252848 Shewmr4_2277 Shewanella sp. MR-4 hypothetical protein YP_734405.1 2721298 D 60480 CDS YP_734406.1 113970613 4252849 2721756..2722016 1 NC_008321.1 KEGG: ilo:IL0185 hypothetical protein; hypothetical protein 2722016 4252849 Shewmr4_2278 Shewanella sp. MR-4 hypothetical protein YP_734406.1 2721756 D 60480 CDS YP_734407.1 113970614 4252850 complement(2722020..2722997) 1 NC_008321.1 KEGG: son:SO1978 hypothetical protein; hypothetical protein 2722997 4252850 Shewmr4_2279 Shewanella sp. MR-4 hypothetical protein YP_734407.1 2722020 R 60480 CDS YP_734408.1 113970615 4252851 2723253..2723660 1 NC_008321.1 PFAM: protein of unknown function DUF307; KEGG: son:SO1977 hypothetical protein; hypothetical protein 2723660 4252851 Shewmr4_2280 Shewanella sp. MR-4 hypothetical protein YP_734408.1 2723253 D 60480 CDS YP_734409.1 113970616 4252852 complement(2723749..2724585) 1 NC_008321.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO1976 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold domain-containing protein 2724585 4252852 Shewmr4_2281 Shewanella sp. MR-4 alpha/beta hydrolase fold domain-containing protein YP_734409.1 2723749 R 60480 CDS YP_734410.1 113970617 4252853 complement(2724585..2725625) 1 NC_008321.1 KEGG: son:SO1975 zinc carboxypeptidase-related protein; zinc carboxypeptidase-like protein 2725625 4252853 Shewmr4_2282 Shewanella sp. MR-4 zinc carboxypeptidase-like protein YP_734410.1 2724585 R 60480 CDS YP_734411.1 113970618 4252854 complement(2725731..2726483) 1 NC_008321.1 KEGG: son:SO1973 hypothetical ABC transporter protein; ABC transporter 2726483 4252854 Shewmr4_2283 Shewanella sp. MR-4 ABC transporter YP_734411.1 2725731 R 60480 CDS YP_734412.1 113970619 4252855 2726734..2727000 1 NC_008321.1 KEGG: noc:Noc_2152 integral membrane protein TerC; integral membrane protein TerC 2727000 4252855 Shewmr4_2284 Shewanella sp. MR-4 integral membrane protein TerC YP_734412.1 2726734 D 60480 CDS YP_734413.1 113970620 4252856 complement(2727063..2728775) 1 NC_008321.1 activates fatty acids by binding to coenzyme A; AMP-binding domain protein 2728775 4252856 Shewmr4_2285 Shewanella sp. MR-4 AMP-binding domain protein YP_734413.1 2727063 R 60480 CDS YP_734414.1 113970621 4252857 complement(2728904..2729284) 1 NC_008321.1 KEGG: son:SO1970 hypothetical protein; hypothetical protein 2729284 4252857 Shewmr4_2286 Shewanella sp. MR-4 hypothetical protein YP_734414.1 2728904 R 60480 CDS YP_734415.1 113970622 4252858 2729586..2730047 1 NC_008321.1 PFAM: protein of unknown function DUF55; KEGG: son:SO1969 hypothetical protein; hypothetical protein 2730047 4252858 Shewmr4_2287 Shewanella sp. MR-4 hypothetical protein YP_734415.1 2729586 D 60480 CDS YP_734416.1 113970623 4252859 2730128..2730460 1 NC_008321.1 KEGG: son:SO1968 hypothetical protein; hypothetical protein 2730460 4252859 Shewmr4_2288 Shewanella sp. MR-4 hypothetical protein YP_734416.1 2730128 D 60480 CDS YP_734417.1 113970624 4252860 complement(2730527..2731321) 1 NC_008321.1 PFAM: protein of unknown function DUF124; KEGG: son:SO1966 conserved hypothetical protein TIGR00266; hypothetical protein 2731321 4252860 Shewmr4_2289 Shewanella sp. MR-4 hypothetical protein YP_734417.1 2730527 R 60480 CDS YP_734418.1 113970625 4252861 complement(2731482..2732396) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1965 transcriptional regulator, LysR family; LysR family transcriptional regulator 2732396 4252861 Shewmr4_2290 Shewanella sp. MR-4 LysR family transcriptional regulator YP_734418.1 2731482 R 60480 CDS YP_734419.1 113970626 4252862 2732611..2733771 1 NC_008321.1 PFAM: homogentisate 1,2-dioxygenase; KEGG: son:SO1963 homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygenase 2733771 4252862 Shewmr4_2291 Shewanella sp. MR-4 homogentisate 1,2-dioxygenase YP_734419.1 2732611 D 60480 CDS YP_734420.1 113970627 4252863 2733885..2734925 1 NC_008321.1 KEGG: son:SO1962 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2734925 4252863 Shewmr4_2292 Shewanella sp. MR-4 4-hydroxyphenylpyruvate dioxygenase YP_734420.1 2733885 D 60480 CDS YP_734421.1 113970628 4252864 complement(2735119..2736522) 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; KEGG: dvu:DVU3106 GGDEF domain protein; diguanylate cyclase 2736522 4252864 Shewmr4_2293 Shewanella sp. MR-4 diguanylate cyclase YP_734421.1 2735119 R 60480 CDS YP_734422.1 113970629 4252865 complement(2736699..2737262) 1 NC_008321.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO1961 maltose O-acetyltransferase; hexapaptide repeat-containing transferase 2737262 4252865 Shewmr4_2294 Shewanella sp. MR-4 hexapaptide repeat-containing transferase YP_734422.1 2736699 R 60480 CDS YP_734423.1 113970630 4252866 2737595..2738218 1 NC_008321.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO1954 transporter, LysE family; lysine exporter protein LysE/YggA 2738218 4252866 Shewmr4_2295 Shewanella sp. MR-4 lysine exporter protein LysE/YggA YP_734423.1 2737595 D 60480 CDS YP_734424.1 113970631 4252867 complement(2738331..2739596) 1 NC_008321.1 PFAM: protein of unknown function DUF482; KEGG: son:SO1953 hypothetical protein; hypothetical protein 2739596 4252867 Shewmr4_2296 Shewanella sp. MR-4 hypothetical protein YP_734424.1 2738331 R 60480 CDS YP_734425.1 113970632 4252868 2739706..2741445 1 NC_008321.1 KEGG: son:SO1952 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1 2741445 4252868 Shewmr4_2297 Shewanella sp. MR-4 gamma-glutamyltransferase 1 YP_734425.1 2739706 D 60480 CDS YP_734426.1 113970633 4252869 complement(2742742..2743167) 1 NC_008321.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: cvi:CV3059 hypothetical protein; glutathione-dependent formaldehyde-activating, GFA 2743167 4252869 Shewmr4_2298 Shewanella sp. MR-4 glutathione-dependent formaldehyde-activating, GFA YP_734426.1 2742742 R 60480 CDS YP_734427.1 113970634 4252870 complement(2743507..2744484) 1 NC_008321.1 PFAM: protein of unknown function DUF1568; KEGG: son:SO3447 hypothetical protein; hypothetical protein 2744484 4252870 Shewmr4_2299 Shewanella sp. MR-4 hypothetical protein YP_734427.1 2743507 R 60480 CDS YP_734428.1 113970635 4252871 complement(2745435..2745815) 1 NC_008321.1 hypothetical protein 2745815 4252871 Shewmr4_2300 Shewanella sp. MR-4 hypothetical protein YP_734428.1 2745435 R 60480 CDS YP_734429.1 113970636 4252872 complement(2746688..2748289) 1 NC_008321.1 KEGG: cps:CPS_1363 putative dipeptidase; TIGRFAM: dipeptidase, putative; PFAM: peptidase M20; hypothetical protein 2748289 4252872 Shewmr4_2301 Shewanella sp. MR-4 hypothetical protein YP_734429.1 2746688 R 60480 CDS YP_734430.1 113970637 4252873 2748563..2750791 1 NC_008321.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: sdn:Sden_1597 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp 2750791 4252873 Shewmr4_2302 Shewanella sp. MR-4 peptidyl-dipeptidase Dcp YP_734430.1 2748563 D 60480 CDS YP_734431.1 113970638 4252874 complement(2750890..2751387) 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2707 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 2751387 4252874 Shewmr4_2303 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_734431.1 2750890 R 60480 CDS YP_734432.1 113970639 4252875 complement(2751422..2751970) 1 NC_008321.1 PFAM: nitroreductase; KEGG: son:SO2708 nitroreductase family protein; nitroreductase 2751970 4252875 Shewmr4_2304 Shewanella sp. MR-4 nitroreductase YP_734432.1 2751422 R 60480 CDS YP_734433.1 113970640 4252876 complement(2752099..2752707) 1 NC_008321.1 PFAM: DoxX family protein; KEGG: son:SO2710 hypothetical protein; DoxX family protein 2752707 4252876 Shewmr4_2305 Shewanella sp. MR-4 DoxX family protein YP_734433.1 2752099 R 60480 CDS YP_734434.1 113970641 4252877 complement(2752743..2753615) 1 NC_008321.1 KEGG: son:SO2711 hypothetical protein; hypothetical protein 2753615 4252877 Shewmr4_2306 Shewanella sp. MR-4 hypothetical protein YP_734434.1 2752743 R 60480 CDS YP_734435.1 113970642 4252878 complement(2753726..2754955) 1 NC_008321.1 PFAM: aminoglycoside phosphotransferase; KEGG: son:SO2712 hypothetical protein; aminoglycoside phosphotransferase 2754955 4252878 Shewmr4_2307 Shewanella sp. MR-4 aminoglycoside phosphotransferase YP_734435.1 2753726 R 60480 CDS YP_734436.1 113970643 4252879 complement(2755046..2755711) 1 NC_008321.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: son:SO2713 transporter, putative; nicotinamide mononucleotide transporter PnuC 2755711 4252879 Shewmr4_2308 Shewanella sp. MR-4 nicotinamide mononucleotide transporter PnuC YP_734436.1 2755046 R 60480 CDS YP_734437.1 113970644 4252880 complement(2755780..2756040) 1 NC_008321.1 KEGG: son:SO2714 hypothetical protein; hypothetical protein 2756040 4252880 Shewmr4_2309 Shewanella sp. MR-4 hypothetical protein YP_734437.1 2755780 R 60480 CDS YP_734438.1 113970645 4252881 complement(2756136..2758334) 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2715 TonB-dependent receptor; TonB-dependent receptor 2758334 4252881 Shewmr4_2310 Shewanella sp. MR-4 TonB-dependent receptor YP_734438.1 2756136 R 60480 CDS YP_734439.1 113970646 4252882 complement(2758670..2759062) 1 NC_008321.1 PFAM: protein of unknown function DUF1425; KEGG: son:SO2720 hypothetical protein; hypothetical protein 2759062 4252882 Shewmr4_2311 Shewanella sp. MR-4 hypothetical protein YP_734439.1 2758670 R 60480 CDS YP_734440.1 113970647 4252883 complement(2759193..2759657) 1 NC_008321.1 PFAM: thioesterase superfamily protein; KEGG: son:SO2721 hypothetical protein; thioesterase superfamily protein 2759657 4252883 Shewmr4_2312 Shewanella sp. MR-4 thioesterase superfamily protein YP_734440.1 2759193 R 60480 CDS YP_734441.1 113970648 4252884 complement(2759644..2760171) 1 NC_008321.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO2722 hypothetical protein; hypothetical protein 2760171 4252884 Shewmr4_2313 Shewanella sp. MR-4 hypothetical protein YP_734441.1 2759644 R 60480 CDS YP_734442.1 113970649 4252885 complement(2760168..2760524) 1 NC_008321.1 PFAM: histidine triad (HIT) protein; KEGG: son:SO2723 HIT family protein; histidine triad (HIT) protein 2760524 4252885 Shewmr4_2314 Shewanella sp. MR-4 histidine triad (HIT) protein YP_734442.1 2760168 R 60480 CDS YP_734443.1 113970650 4252886 2760670..2762436 1 NC_008321.1 PFAM: peptidase M61 domain protein; KEGG: son:SO2724 protease, putative; peptidase M61 domain-containing protein 2762436 4252886 Shewmr4_2315 Shewanella sp. MR-4 peptidase M61 domain-containing protein YP_734443.1 2760670 D 60480 CDS YP_734444.1 113970651 4252887 complement(2762562..2763197) 1 NC_008321.1 PFAM: regulatory protein, LuxR; KEGG: son:SO2725 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 2763197 4252887 Shewmr4_2316 Shewanella sp. MR-4 LuxR family transcriptional regulator YP_734444.1 2762562 R 60480 CDS YP_734445.1 113970652 4252888 2763493..2764239 1 NC_008321.1 PFAM: cytochrome B561; KEGG: son:SO2726 cytochrome b, putative; cytochrome B561 2764239 4252888 Shewmr4_2317 Shewanella sp. MR-4 cytochrome B561 YP_734445.1 2763493 D 60480 CDS YP_734446.1 113970653 4252889 complement(2764311..2764661) 1 NC_008321.1 KEGG: son:SO2727 cytochrome c3; cytochrome c3 2764661 4252889 Shewmr4_2318 Shewanella sp. MR-4 cytochrome c3 YP_734446.1 2764311 R 60480 CDS YP_734447.1 113970654 4252890 complement(2764999..2766906) 1 NC_008321.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_4326 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2766906 4252890 Shewmr4_2319 Shewanella sp. MR-4 AMP-dependent synthetase and ligase YP_734447.1 2764999 R 60480 CDS YP_734448.1 113970655 4252891 2767133..2768815 1 NC_008321.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO1899 hypothetical protein; peptidoglycan binding domain-containing protein 2768815 4252891 Shewmr4_2320 Shewanella sp. MR-4 peptidoglycan binding domain-containing protein YP_734448.1 2767133 D 60480 CDS YP_734449.1 113970656 4252892 2769087..2769491 1 NC_008321.1 PFAM: regulatory protein, MerR; KEGG: son:SO1898 transcriptional regulator, putative; MerR family transcriptional regulator 2769491 4252892 Shewmr4_2321 Shewanella sp. MR-4 MerR family transcriptional regulator YP_734449.1 2769087 D 60480 CDS YP_734450.1 113970657 4252893 2769645..2770814 1 NC_008321.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO1897 isovaleryl-CoA dehydrogenase; isovaleryl-CoA dehydrogenase 2770814 4252893 Shewmr4_2322 Shewanella sp. MR-4 isovaleryl-CoA dehydrogenase YP_734450.1 2769645 D 60480 CDS YP_734451.1 113970658 4252894 2770915..2772522 1 NC_008321.1 PFAM: carboxyl transferase; KEGG: son:SO1896 3-methylcrotonyl-CoA carboxylase beta subunit; propionyl-CoA carboxylase 2772522 4252894 Shewmr4_2323 Shewanella sp. MR-4 propionyl-CoA carboxylase YP_734451.1 2770915 D 60480 CDS YP_734452.1 113970659 4252895 2772567..2773412 1 NC_008321.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO1895 enoyl-CoA hydratase; methylglutaconyl-CoA hydratase 2773412 4252895 Shewmr4_2324 Shewanella sp. MR-4 methylglutaconyl-CoA hydratase YP_734452.1 2772567 D 60480 CDS YP_734453.1 113970660 4252896 2773412..2775451 1 NC_008321.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO1894 3-methylcrotonyl-CoA carboxylase alpha subunit; 3-methylcrotonoyl-CoA carboxylase subunit alpha 2775451 4252896 Shewmr4_2325 Shewanella sp. MR-4 3-methylcrotonoyl-CoA carboxylase subunit alpha YP_734453.1 2773412 D 60480 CDS YP_734454.1 113970661 4252897 2775452..2776399 1 NC_008321.1 PFAM: pyruvate carboxyltransferase; KEGG: son:SO1893 hydroxymethylglutaryl-CoA lyase; hydroxymethylglutaryl-CoA lyase 2776399 4252897 Shewmr4_2326 Shewanella sp. MR-4 hydroxymethylglutaryl-CoA lyase YP_734454.1 2775452 D 60480 CDS YP_734455.1 113970662 4252898 2776468..2777172 1 NC_008321.1 KEGG: son:SO1892 acetate CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2777172 4252898 Shewmr4_2327 Shewanella sp. MR-4 3-oxoacid CoA-transferase subunit A YP_734455.1 2776468 D 60480 CDS YP_734456.1 113970663 4252899 2777295..2777951 1 NC_008321.1 KEGG: son:SO1891 3-oxoacid CoA-transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; butyryl-CoA:acetate CoA transferase 2777951 4252899 Shewmr4_2328 Shewanella sp. MR-4 butyryl-CoA:acetate CoA transferase YP_734456.1 2777295 D 60480 CDS YP_734457.1 113970664 4252900 2778731..2779126 1 NC_008321.1 hypothetical protein 2779126 4252900 Shewmr4_2329 Shewanella sp. MR-4 hypothetical protein YP_734457.1 2778731 D 60480 CDS YP_734458.1 113970665 4252901 2779123..2780994 1 NC_008321.1 KEGG: sdn:Sden_3728 cadherin; hypothetical protein 2780994 4252901 Shewmr4_2330 Shewanella sp. MR-4 hypothetical protein YP_734458.1 2779123 D 60480 CDS YP_734459.1 113970666 4252902 2781560..2782162 1 NC_008321.1 PFAM: ThiJ/PfpI domain protein; KEGG: son:SO1887 hypothetical protein; ThiJ/PfpI domain-containing protein 2782162 4252902 Shewmr4_2331 Shewanella sp. MR-4 ThiJ/PfpI domain-containing protein YP_734459.1 2781560 D 60480 CDS YP_734460.1 113970667 4252903 2782194..2782505 1 NC_008321.1 KEGG: son:SO1886 hypothetical protein; hypothetical protein 2782505 4252903 Shewmr4_2332 Shewanella sp. MR-4 hypothetical protein YP_734460.1 2782194 D 60480 CDS YP_734461.1 113970668 4252904 2782730..2783485 1 NC_008321.1 PFAM: protein of unknown function DUF81; KEGG: son:SO1884 membrane protein, putative; hypothetical protein 2783485 4252904 Shewmr4_2333 Shewanella sp. MR-4 hypothetical protein YP_734461.1 2782730 D 60480 CDS YP_734462.1 113970669 4252905 2783559..2784242 1 NC_008321.1 PFAM: Negative transcriptional regulator; KEGG: sdn:Sden_3742 negative transcriptional regulator; negative transcriptional regulator 2784242 4252905 Shewmr4_2334 Shewanella sp. MR-4 negative transcriptional regulator YP_734462.1 2783559 D 60480 CDS YP_734463.1 113970670 4252906 2784242..2784682 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1883 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 2784682 4252906 Shewmr4_2335 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_734463.1 2784242 D 60480 CDS YP_734464.1 113970671 4252907 complement(2784773..2785210) 1 NC_008321.1 PFAM: transposase IS200-family protein; KEGG: vch:VCA0275 IS1004 transposase; transposase IS200-family protein 2785210 4252907 Shewmr4_2336 Shewanella sp. MR-4 transposase IS200-family protein YP_734464.1 2784773 R 60480 CDS YP_734465.1 113970672 4252908 complement(2785386..2788481) 1 NC_008321.1 PFAM: acriflavin resistance protein; KEGG: son:SO1882 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 2788481 4252908 Shewmr4_2337 Shewanella sp. MR-4 acriflavin resistance protein YP_734465.1 2785386 R 60480 CDS YP_734466.1 113970673 4252909 complement(2788478..2789560) 1 NC_008321.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1881 HlyD family-related protein; RND family efflux transporter MFP subunit 2789560 4252909 Shewmr4_2338 Shewanella sp. MR-4 RND family efflux transporter MFP subunit YP_734466.1 2788478 R 60480 CDS YP_734467.1 113970674 4252910 complement(2789933..2791030) 1 NC_008321.1 PFAM: NlpBDapX family lipoprotein; KEGG: son:SO1880 lipoprotein-34 NlpB; NlpB/DapX family lipoprotein 2791030 4252910 Shewmr4_2339 Shewanella sp. MR-4 NlpB/DapX family lipoprotein YP_734467.1 2789933 R 60480 CDS YP_734468.1 113970675 4252911 complement(2791034..2791918) 1 NC_008321.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2791918 4252911 Shewmr4_2340 Shewanella sp. MR-4 dihydrodipicolinate synthase YP_734468.1 2791034 R 60480 CDS YP_734469.1 113970676 4252912 2792091..2792642 1 NC_008321.1 KEGG: son:SO1878 glycine cleavage system transcriptional repressor, putative; glycine cleavage system transcriptional repressor 2792642 4252912 Shewmr4_2341 Shewanella sp. MR-4 glycine cleavage system transcriptional repressor YP_734469.1 2792091 D 60480 CDS YP_734470.1 113970677 4252913 2792646..2793113 1 NC_008321.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2793113 bcp 4252913 bcp Shewanella sp. MR-4 thioredoxin-dependent thiol peroxidase YP_734470.1 2792646 D 60480 CDS YP_734471.1 113970678 4252914 complement(2793294..2793908) 1 NC_008321.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO2865 L-lysine exporter, putative; lysine exporter protein LysE/YggA 2793908 4252914 Shewmr4_2343 Shewanella sp. MR-4 lysine exporter protein LysE/YggA YP_734471.1 2793294 R 60480 CDS YP_734472.1 113970679 4252915 2794021..2794938 1 NC_008321.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 2794938 4252915 Shewmr4_2344 Shewanella sp. MR-4 chromosome replication initiation inhibitor protein YP_734472.1 2794021 D 60480 CDS YP_734473.1 113970680 4252916 complement(2795066..2796166) 1 NC_008321.1 PFAM: protein of unknown function UPF0118; KEGG: son:SO2867 permease PerM, putative; hypothetical protein 2796166 4252916 Shewmr4_2345 Shewanella sp. MR-4 hypothetical protein YP_734473.1 2795066 R 60480 CDS YP_734474.1 113970681 4252917 complement(2796375..2796608) 1 NC_008321.1 PFAM: SirA family protein; KEGG: son:SO2868 hypothetical protein; SirA family protein 2796608 4252917 Shewmr4_2346 Shewanella sp. MR-4 SirA family protein YP_734474.1 2796375 R 60480 CDS YP_734475.1 113970682 4252918 2796721..2798190 1 NC_008321.1 PFAM: peptidase M48, Ste24p; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO2869 hypothetical protein; peptidase M48, Ste24p 2798190 4252918 Shewmr4_2347 Shewanella sp. MR-4 peptidase M48, Ste24p YP_734475.1 2796721 D 60480 CDS YP_734476.1 113970683 4252919 2798314..2798664 1 NC_008321.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: son:SO2871 arsenate reductase, putative; arsenate reductase 2798664 4252919 Shewmr4_2348 Shewanella sp. MR-4 arsenate reductase YP_734476.1 2798314 D 60480 CDS YP_734477.1 113970684 4252920 2798712..2799092 1 NC_008321.1 KEGG: son:SO2872 hypothetical protein; hypothetical protein 2799092 4252920 Shewmr4_2349 Shewanella sp. MR-4 hypothetical protein YP_734477.1 2798712 D 60480 CDS YP_734478.1 113970685 4252921 2799519..2801474 1 NC_008321.1 KEGG: son:SO2876 hypothetical protein; hypothetical protein 2801474 4252921 Shewmr4_2350 Shewanella sp. MR-4 hypothetical protein YP_734478.1 2799519 D 60480 CDS YP_734479.1 113970686 4252922 complement(2801611..2802474) 1 NC_008321.1 putative metalloprotease; heat shock protein HtpX 2802474 4252922 Shewmr4_2351 Shewanella sp. MR-4 heat shock protein HtpX YP_734479.1 2801611 R 60480 CDS YP_734480.1 113970687 4252923 2802762..2803472 1 NC_008321.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 2803472 4252923 Shewmr4_2352 Shewanella sp. MR-4 peptidase E YP_734480.1 2802762 D 60480 CDS YP_734481.1 113970688 4252924 2803881..2805464 1 NC_008321.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 2805464 mdoG 4252924 mdoG Shewanella sp. MR-4 glucan biosynthesis protein G YP_734481.1 2803881 D 60480 CDS YP_734482.1 113970689 4252925 2805850..2805999 1 NC_008321.1 KEGG: son:SO2735 hypothetical protein; hypothetical protein 2805999 4252925 Shewmr4_2354 Shewanella sp. MR-4 hypothetical protein YP_734482.1 2805850 D 60480 CDS YP_734483.1 113970690 4252926 2806142..2807110 1 NC_008321.1 KEGG: son:SO2736 hypothetical protein; hypothetical protein 2807110 4252926 Shewmr4_2355 Shewanella sp. MR-4 hypothetical protein YP_734483.1 2806142 D 60480 CDS YP_734484.1 113970691 4252927 complement(2807196..2807891) 1 NC_008321.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 2807891 bioD 4252927 bioD Shewanella sp. MR-4 dithiobiotin synthetase YP_734484.1 2807196 R 60480 CDS YP_734485.1 113970692 4252928 complement(2807934..2808761) 1 NC_008321.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2738 biotin synthesis protein BioC; biotin biosynthesis protein BioC 2808761 4252928 Shewmr4_2357 Shewanella sp. MR-4 biotin biosynthesis protein BioC YP_734485.1 2807934 R 60480 CDS YP_734486.1 113970693 4252929 complement(2808916..2810136) 1 NC_008321.1 PFAM: aminotransferase, class I and II; aminotransferase class-III; KEGG: son:SO2739 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 2810136 4252929 Shewmr4_2358 Shewanella sp. MR-4 8-amino-7-oxononanoate synthase YP_734486.1 2808916 R 60480 CDS YP_734487.1 113970694 4252930 complement(2810353..2811405) 1 NC_008321.1 KEGG: son:SO2740 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 2811405 4252930 Shewmr4_2359 Shewanella sp. MR-4 biotin synthase YP_734487.1 2810353 R 60480 CDS YP_734488.1 113970695 4252931 2811528..2812892 1 NC_008321.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: son:SO2741 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; aminotransferase 2812892 4252931 Shewmr4_2360 Shewanella sp. MR-4 aminotransferase YP_734488.1 2811528 D 60480 CDS YP_734489.1 113970696 4252932 complement(2812911..2816351) 1 NC_008321.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2742 sensor histidine kinase/response regulator; multi-sensor hybrid histidine kinase 2816351 4252932 Shewmr4_2361 Shewanella sp. MR-4 multi-sensor hybrid histidine kinase YP_734489.1 2812911 R 60480 CDS YP_734490.1 113970697 4252933 2816527..2818479 1 NC_008321.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 2818479 4252933 Shewmr4_2362 Shewanella sp. MR-4 acetyl-CoA synthetase YP_734490.1 2816527 D 60480 CDS YP_734491.1 113970698 4252934 2818706..2820478 1 NC_008321.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO2744 helicase; type III restriction enzyme, res subunit 2820478 4252934 Shewmr4_2363 Shewanella sp. MR-4 type III restriction enzyme, res subunit YP_734491.1 2818706 D 60480 CDS YP_734492.1 113970699 4252935 2820539..2820799 1 NC_008321.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 1 2820799 grxA 4252935 grxA Shewanella sp. MR-4 glutaredoxin 1 YP_734492.1 2820539 D 60480 CDS YP_734493.1 113970700 4252936 complement(2820859..2822022) 1 NC_008321.1 KEGG: pha:PSHAa0696 hypothetical protein; hypothetical protein 2822022 4252936 Shewmr4_2365 Shewanella sp. MR-4 hypothetical protein YP_734493.1 2820859 R 60480 CDS YP_734494.1 113970701 4252937 complement(2823354..2824106) 1 NC_008321.1 KEGG: son:SO2746 hypothetical protein; hypothetical protein 2824106 4252937 Shewmr4_2366 Shewanella sp. MR-4 hypothetical protein YP_734494.1 2823354 R 60480 CDS YP_734495.1 113970702 4252938 complement(2824131..2824667) 1 NC_008321.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO2747 peptidoglycan-associated lipoprotein; OmpA/MotB domain-containing protein 2824667 4252938 Shewmr4_2367 Shewanella sp. MR-4 OmpA/MotB domain-containing protein YP_734495.1 2824131 R 60480 CDS YP_734496.1 113970703 4252939 complement(2824714..2826042) 1 NC_008321.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2826042 tolB 4252939 tolB Shewanella sp. MR-4 translocation protein TolB YP_734496.1 2824714 R 60480 CDS YP_734497.1 113970704 4252940 complement(2826052..2827074) 1 NC_008321.1 PFAM: TolA family protein; KEGG: son:SO2749 tolA protein; TolA family protein 2827074 4252940 Shewmr4_2369 Shewanella sp. MR-4 TolA family protein YP_734497.1 2826052 R 60480 CDS YP_734498.1 113970705 4252941 complement(2827075..2827509) 1 NC_008321.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO2750 tolr protein; biopolymer transport protein ExbD/TolR 2827509 4252941 Shewmr4_2370 Shewanella sp. MR-4 biopolymer transport protein ExbD/TolR YP_734498.1 2827075 R 60480 CDS YP_734499.1 113970706 4252942 complement(2827509..2828195) 1 NC_008321.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO2751 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 2828195 4252942 Shewmr4_2371 Shewanella sp. MR-4 MotA/TolQ/ExbB proton channel YP_734499.1 2827509 R 60480 CDS YP_734500.1 113970707 4252943 complement(2828185..2828586) 1 NC_008321.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: son:SO2752 conserved hypothetical protein TIGR00051; 4-hydroxybenzoyl-CoA thioesterase 2828586 4252943 Shewmr4_2372 Shewanella sp. MR-4 4-hydroxybenzoyl-CoA thioesterase YP_734500.1 2828185 R 60480 CDS YP_734501.1 113970708 4252944 complement(2828757..2830940) 1 NC_008321.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO2753 prolyl endopeptidase; prolyl oligopeptidase 2830940 4252944 Shewmr4_2373 Shewanella sp. MR-4 prolyl oligopeptidase YP_734501.1 2828757 R 60480 CDS YP_734502.1 113970709 4252945 complement(2831732..2832604) 1 NC_008321.1 PFAM: OmpA/MotB domain protein; KEGG: sdn:Sden_1398 OmpA/MotB; OmpA/MotB domain-containing protein 2832604 4252945 Shewmr4_2374 Shewanella sp. MR-4 OmpA/MotB domain-containing protein YP_734502.1 2831732 R 60480 CDS YP_734503.1 113970710 4252946 2832747..2833415 1 NC_008321.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 2833415 4252946 Shewmr4_2375 Shewanella sp. MR-4 ribonuclease T YP_734503.1 2832747 D 60480 CDS YP_734504.1 113970711 4252947 complement(2833499..2834104) 1 NC_008321.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sdn:Sden_2091 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 2834104 4252947 Shewmr4_2376 Shewanella sp. MR-4 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_734504.1 2833499 R 60480 CDS YP_734505.1 113970712 4252948 2834475..2835794 1 NC_008321.1 PFAM: Gluconate transporter; Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO2757 membrane protein, putative; Na+/H+ antiporter NhaC 2835794 4252948 Shewmr4_2377 Shewanella sp. MR-4 Na+/H+ antiporter NhaC YP_734505.1 2834475 D 60480 CDS YP_734506.1 113970713 4252949 complement(2835868..2836533) 1 NC_008321.1 PFAM: RDD domain containing protein; KEGG: cac:CAC2792 uncharacterized conserved membrane protein, YXAI B.subtilis homolog; RDD domain-containing protein 2836533 4252949 Shewmr4_2378 Shewanella sp. MR-4 RDD domain-containing protein YP_734506.1 2835868 R 60480 CDS YP_734507.1 113970714 4252950 complement(2836757..2837383) 1 NC_008321.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2837383 upp 4252950 upp Shewanella sp. MR-4 uracil phosphoribosyltransferase YP_734507.1 2836757 R 60480 CDS YP_734508.1 113970715 4252951 2837711..2838748 1 NC_008321.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2838748 4252951 Shewmr4_2380 Shewanella sp. MR-4 phosphoribosylaminoimidazole synthetase YP_734508.1 2837711 D 60480 CDS YP_734509.1 113970716 4252952 2838748..2839392 1 NC_008321.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2839392 purN 4252952 purN Shewanella sp. MR-4 phosphoribosylglycinamide formyltransferase YP_734509.1 2838748 D 60480 CDS YP_734510.1 113970717 4252953 2839534..2840280 1 NC_008321.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO2762 nagD protein; UMP phosphatase 2840280 4252953 Shewmr4_2382 Shewanella sp. MR-4 UMP phosphatase YP_734510.1 2839534 D 60480 CDS YP_734511.1 113970718 4252954 2840478..2842151 1 NC_008321.1 PFAM: peptidase M20; peptidase M28; KEGG: son:SO2766 hypothetical protein; peptidase M28 2842151 4252954 Shewmr4_2383 Shewanella sp. MR-4 peptidase M28 YP_734511.1 2840478 D 60480 CDS YP_734512.1 113970719 4252955 2842621..2844285 1 NC_008321.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 2844285 asnB 4252955 asnB Shewanella sp. MR-4 asparagine synthetase B YP_734512.1 2842621 D 60480 CDS YP_734513.1 113970720 4252956 complement(2844445..2845452) 1 NC_008321.1 PFAM: Patatin; KEGG: pha:PSHAb0541 putative hydrolase similar to YjjU; patatin 2845452 4252956 Shewmr4_2385 Shewanella sp. MR-4 patatin YP_734513.1 2844445 R 60480 CDS YP_734514.1 113970721 4252957 complement(2845814..2848042) 1 NC_008321.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcb:XC_2846 iron receptor; TonB-dependent siderophore receptor 2848042 4252957 Shewmr4_2386 Shewanella sp. MR-4 TonB-dependent siderophore receptor YP_734514.1 2845814 R 60480 CDS YP_734515.1 113970722 4252958 complement(2848303..2850093) 1 NC_008321.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: son:SO2768 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 2850093 4252958 Shewmr4_2387 Shewanella sp. MR-4 acyl-CoA dehydrogenase domain-containing protein YP_734515.1 2848303 R 60480 CDS YP_734516.1 113970723 4252959 2850320..2851168 1 NC_008321.1 PFAM: Aldose 1-epimerase; KEGG: son:SO2769 hypothetical protein; aldose 1-epimerase 2851168 4252959 Shewmr4_2388 Shewanella sp. MR-4 aldose 1-epimerase YP_734516.1 2850320 D 60480 CDS YP_734517.1 113970724 4252960 complement(2851214..2852017) 1 NC_008321.1 PFAM: Integrase, catalytic region; KEGG: pcr:Pcryo_0715 Integrase, catalytic region; integrase catalytic subunit 2852017 4252960 Shewmr4_2389 Shewanella sp. MR-4 integrase catalytic subunit YP_734517.1 2851214 R 60480 CDS YP_734518.1 113970725 4252961 complement(2852047..2852442) 1 NC_008321.1 KEGG: dde:Dde_2987 transposase; transposase 2852442 4252961 Shewmr4_2390 Shewanella sp. MR-4 transposase YP_734518.1 2852047 R 60480 CDS YP_734519.1 113970726 4252962 complement(2852564..2853439) 1 NC_008321.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: son:SO2771 2-hydroxy-3-oxopropionate reductase; 6-phosphogluconate dehydrogenase, NAD-binding 2853439 4252962 Shewmr4_2391 Shewanella sp. MR-4 6-phosphogluconate dehydrogenase, NAD-binding YP_734519.1 2852564 R 60480 CDS YP_734520.1 113970727 4252963 complement(2853782..2854261) 1 NC_008321.1 PFAM: thioesterase superfamily protein; KEGG: son:SO2772 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 2854261 4252963 Shewmr4_2392 Shewanella sp. MR-4 thioesterase superfamily protein YP_734520.1 2853782 R 60480 CDS YP_734521.1 113970728 4252964 complement(2854378..2854746) 1 NC_008321.1 KEGG: son:SO2773 hypothetical protein; hypothetical protein 2854746 4252964 Shewmr4_2393 Shewanella sp. MR-4 hypothetical protein YP_734521.1 2854378 R 60480 CDS YP_734522.1 113970729 4252965 complement(2854926..2856164) 1 NC_008321.1 PFAM: beta-ketoacyl synthase; KEGG: son:SO2774 3-oxoacyl-(acyl-carrier-protein) synthase II; 3-oxoacyl-[acyl-carrier-protein] synthase II 2856164 4252965 Shewmr4_2394 Shewanella sp. MR-4 3-oxoacyl-[acyl-carrier-protein] synthase II YP_734522.1 2854926 R 60480 CDS YP_734523.1 113970730 4252966 complement(2856374..2856607) 1 NC_008321.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2856607 acpP 4252966 acpP Shewanella sp. MR-4 acyl carrier protein YP_734523.1 2856374 R 60480 CDS YP_734524.1 113970731 4252967 complement(2856771..2857517) 1 NC_008321.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; 3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: son:SO2776 3-oxoacyl-[acyl-carrier protein] reductase; 3-oxoacyl-[acyl-carrier-protein] reductase 2857517 4252967 Shewmr4_2396 Shewanella sp. MR-4 3-oxoacyl-[acyl-carrier-protein] reductase YP_734524.1 2856771 R 60480 CDS YP_734525.1 113970732 4252968 complement(2857527..2858453) 1 NC_008321.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: son:SO2777 malonyl CoA-acyl carrier protein transacylase; [Acyl-carrier-protein] S-malonyltransferase 2858453 4252968 Shewmr4_2397 Shewanella sp. MR-4 [Acyl-carrier-protein] S-malonyltransferase YP_734525.1 2857527 R 60480 CDS YP_734526.1 113970733 4252969 complement(2858558..2859517) 1 NC_008321.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 2859517 4252969 Shewmr4_2398 Shewanella sp. MR-4 3-oxoacyl-(acyl carrier protein) synthase III YP_734526.1 2858558 R 60480 CDS YP_734527.1 113970734 4252970 complement(2859527..2860555) 1 NC_008321.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 2860555 4252970 Shewmr4_2399 Shewanella sp. MR-4 putative glycerol-3-phosphate acyltransferase PlsX YP_734527.1 2859527 R 60480 CDS YP_734528.1 113970735 4252971 complement(2860571..2860741) 1 NC_008321.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2860741 rpmF 4252971 rpmF Shewanella sp. MR-4 50S ribosomal protein L32 YP_734528.1 2860571 R 60480 CDS YP_734529.1 113970736 4252972 complement(2860759..2861283) 1 NC_008321.1 PFAM: protein of unknown function DUF177; KEGG: son:SO2781 hypothetical protein; hypothetical protein 2861283 4252972 Shewmr4_2401 Shewanella sp. MR-4 hypothetical protein YP_734529.1 2860759 R 60480 CDS YP_734530.1 113970737 4252973 2861541..2862155 1 NC_008321.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO2782 maf protein, putative; maf protein 2862155 4252973 Shewmr4_2402 Shewanella sp. MR-4 maf protein YP_734530.1 2861541 D 60480 CDS YP_734531.1 113970738 4252974 complement(2862317..2863063) 1 NC_008321.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sdn:Sden_2300 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase 2863063 4252974 Shewmr4_2403 Shewanella sp. MR-4 HAD family hydrolase YP_734531.1 2862317 R 60480 CDS YP_734532.1 113970739 4252975 complement(2863104..2864093) 1 NC_008321.1 KEGG: sdn:Sden_2301 pseudouridine synthase, RluD; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; ribosomal large subunit pseudouridine synthase C 2864093 4252975 Shewmr4_2404 Shewanella sp. MR-4 ribosomal large subunit pseudouridine synthase C YP_734532.1 2863104 R 60480 CDS YP_734533.1 113970740 4252976 2864659..2867940 1 NC_008321.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: son:SO2785 ribonuclease E; RNAse E 2867940 4252976 Shewmr4_2405 Shewanella sp. MR-4 RNAse E YP_734533.1 2864659 D 60480 CDS YP_734534.1 113970741 4252977 2868067..2869644 1 NC_008321.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sdn:Sden_2303 sulphate transporter; sulfate transporter 2869644 4252977 Shewmr4_2406 Shewanella sp. MR-4 sulfate transporter YP_734534.1 2868067 D 60480 CDS YP_734535.1 113970742 4252978 complement(2870126..2870335) 1 NC_008321.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: son:SO2787 cold shock domain family protein; cold-shock DNA-binding protein family protein 2870335 4252978 Shewmr4_2407 Shewanella sp. MR-4 cold-shock DNA-binding protein family protein YP_734535.1 2870126 R 60480 CDS YP_734536.1 113970743 4252979 complement(2870642..2871457) 1 NC_008321.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 2871457 rrmA 4252979 rrmA Shewanella sp. MR-4 23S rRNA methyltransferase A YP_734536.1 2870642 R 60480 CDS YP_734537.1 113970744 4252980 complement(2871490..2872296) 1 NC_008321.1 KEGG: son:SO2789 hypothetical protein; hypothetical protein 2872296 4252980 Shewmr4_2409 Shewanella sp. MR-4 hypothetical protein YP_734537.1 2871490 R 60480 CDS YP_734538.1 113970745 4252981 2872472..2873884 1 NC_008321.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2873884 sbcB 4252981 sbcB Shewanella sp. MR-4 exonuclease I YP_734538.1 2872472 D 60480 CDS YP_734539.1 113970746 4252982 2874092..2874982 1 NC_008321.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2874982 4252982 Shewmr4_2411 Shewanella sp. MR-4 cytidine deaminase YP_734539.1 2874092 D 60480 CDS YP_734540.1 113970747 4252983 complement(2875079..2875285) 1 NC_008321.1 PFAM: protein of unknown function DUF1289; KEGG: son:SO2792 hypothetical protein; hypothetical protein 2875285 4252983 Shewmr4_2412 Shewanella sp. MR-4 hypothetical protein YP_734540.1 2875079 R 60480 CDS YP_734541.1 113970748 4252984 complement(2875266..2875613) 1 NC_008321.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2793 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 2875613 4252984 Shewmr4_2413 Shewanella sp. MR-4 glyoxalase/bleomycin resistance protein/dioxygenase YP_734541.1 2875266 R 60480 CDS YP_734542.1 113970749 4252985 complement(2875689..2876393) 1 NC_008321.1 KEGG: son:SO2794 hypothetical protein; hypothetical protein 2876393 4252985 Shewmr4_2414 Shewanella sp. MR-4 hypothetical protein YP_734542.1 2875689 R 60480 CDS YP_734543.1 113970750 4252986 2876740..2877120 1 NC_008321.1 KEGG: son:SO2795 glyoxalase family protein; glyoxalase family protein 2877120 4252986 Shewmr4_2415 Shewanella sp. MR-4 glyoxalase family protein YP_734543.1 2876740 D 60480 CDS YP_734544.1 113970751 4252987 2877384..2880602 1 NC_008321.1 PFAM: protein of unknown function DUF748; KEGG: son:SO2796 hypothetical protein; hypothetical protein 2880602 4252987 Shewmr4_2416 Shewanella sp. MR-4 hypothetical protein YP_734544.1 2877384 D 60480 CDS YP_734545.1 113970752 4252988 2880829..2881185 1 NC_008321.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO2797 hypothetical protein; glutaredoxin 2881185 4252988 Shewmr4_2417 Shewanella sp. MR-4 glutaredoxin YP_734545.1 2880829 D 60480 CDS YP_734546.1 113970753 4252989 complement(2881243..2881932) 1 NC_008321.1 KEGG: son:SO2798 hypothetical protein; hypothetical protein 2881932 4252989 Shewmr4_2418 Shewanella sp. MR-4 hypothetical protein YP_734546.1 2881243 R 60480 CDS YP_734547.1 113970754 4252990 2882096..2882560 1 NC_008321.1 KEGG: son:SO2799 lipoprotein, putative; putative lipoprotein 2882560 4252990 Shewmr4_2419 Shewanella sp. MR-4 putative lipoprotein YP_734547.1 2882096 D 60480 CDS YP_734548.1 113970755 4252991 complement(2882694..2882873) 1 NC_008321.1 PFAM: protein of unknown function DUF343; KEGG: son:SO2800 hypothetical protein; hypothetical protein 2882873 4252991 Shewmr4_2420 Shewanella sp. MR-4 hypothetical protein YP_734548.1 2882694 R 60480 CDS YP_734549.1 113970756 4252992 complement(2882863..2883870) 1 NC_008321.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2883870 lpxK 4252992 lpxK Shewanella sp. MR-4 tetraacyldisaccharide 4'-kinase YP_734549.1 2882863 R 60480 CDS YP_734550.1 113970757 4252993 complement(2883871..2885676) 1 NC_008321.1 KEGG: son:SO2802 ABC transporter, ATP-binding protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 2885676 4252993 Shewmr4_2422 Shewanella sp. MR-4 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_734550.1 2883871 R 60480 CDS YP_734551.1 113970758 4252994 complement(2885709..2888030) 1 NC_008321.1 TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: son:SO2803 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 2888030 4252994 Shewmr4_2423 Shewanella sp. MR-4 DNA internalization-related competence protein ComEC/Rec2 YP_734551.1 2885709 R 60480 CDS YP_734552.1 113970759 4252995 2888063..2888572 1 NC_008321.1 KEGG: son:SO2804 hypothetical protein; hypothetical protein 2888572 4252995 Shewmr4_2424 Shewanella sp. MR-4 hypothetical protein YP_734552.1 2888063 D 60480 CDS YP_734553.1 113970760 4252996 2888965..2890137 1 NC_008321.1 PFAM: NnrS family protein; KEGG: son:SO2805 putative uncharacterized protein involved in response to NO; NnrS family protein 2890137 4252996 Shewmr4_2425 Shewanella sp. MR-4 NnrS family protein YP_734553.1 2888965 D 60480 CDS YP_734554.1 113970761 4252997 2890287..2890691 1 NC_008321.1 PFAM: phosphate-starvation-inducible E; KEGG: son:SO2806 hypothetical protein; phosphate-starvation-inducible E 2890691 4252997 Shewmr4_2426 Shewanella sp. MR-4 phosphate-starvation-inducible E YP_734554.1 2890287 D 60480 CDS YP_734555.1 113970762 4252998 2890843..2891145 1 NC_008321.1 PFAM: type IV pilus assembly PilZ; KEGG: son:SO2807 hypothetical protein; type IV pilus assembly PilZ 2891145 4252998 Shewmr4_2427 Shewanella sp. MR-4 type IV pilus assembly PilZ YP_734555.1 2890843 D 60480 CDS YP_734556.1 113970763 4252999 2891223..2891891 1 NC_008321.1 KEGG: son:SO2808 hypothetical protein; hypothetical protein 2891891 4252999 Shewmr4_2428 Shewanella sp. MR-4 hypothetical protein YP_734556.1 2891223 D 60480 CDS YP_734557.1 113970764 4253000 2891878..2892222 1 NC_008321.1 KEGG: son:SO2809 RepA domain protein; RepA domain-containing protein 2892222 4253000 Shewmr4_2429 Shewanella sp. MR-4 RepA domain-containing protein YP_734557.1 2891878 D 60480 CDS YP_734558.1 113970765 4253001 complement(2892434..2892682) 1 NC_008321.1 KEGG: son:SO2821 hypothetical protein; hypothetical protein 2892682 4253001 Shewmr4_2430 Shewanella sp. MR-4 hypothetical protein YP_734558.1 2892434 R 60480 CDS YP_734559.1 113970766 4253002 2892811..2894493 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: son:SO2822 sensor histidine kinase; signal transduction histidine kinase, LytS 2894493 4253002 Shewmr4_2431 Shewanella sp. MR-4 signal transduction histidine kinase, LytS YP_734559.1 2892811 D 60480 CDS YP_734560.1 113970767 4253003 2894490..2895200 1 NC_008321.1 unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT 2895200 4253003 Shewmr4_2432 Shewanella sp. MR-4 putative two-component response-regulatory protein YehT YP_734560.1 2894490 D 60480 CDS YP_734561.1 113970768 4253004 2895396..2896844 1 NC_008321.1 PFAM: carbon starvation protein CstA; KEGG: son:SO2823.1 hypothetical carbon starvation protein A; carbon starvation protein CstA 2896844 4253004 Shewmr4_2433 Shewanella sp. MR-4 carbon starvation protein CstA YP_734561.1 2895396 D 60480 CDS YP_734562.1 113970769 4253005 2896982..2897344 1 NC_008321.1 KEGG: son:SO2827 hypothetical protein; hypothetical protein 2897344 4253005 Shewmr4_2434 Shewanella sp. MR-4 hypothetical protein YP_734562.1 2896982 D 60480 CDS YP_734563.1 113970770 4253006 complement(2897742..2898851) 1 NC_008321.1 KEGG: pha:PSHAa2586 L-sorbosone dehydrogenase (SNDH); L-sorbosone dehydrogenase (SNDH) 2898851 4253006 Shewmr4_2435 Shewanella sp. MR-4 L-sorbosone dehydrogenase (SNDH) YP_734563.1 2897742 R 60480 CDS YP_734564.1 113970771 4253007 2899017..2899475 1 NC_008321.1 KEGG: son:SO2829 hypothetical protein; hypothetical protein 2899475 4253007 Shewmr4_2436 Shewanella sp. MR-4 hypothetical protein YP_734564.1 2899017 D 60480 CDS YP_734565.1 113970772 4253008 complement(2899541..2900419) 1 NC_008321.1 KEGG: son:SO2830 hypothetical protein; hypothetical protein 2900419 4253008 Shewmr4_2437 Shewanella sp. MR-4 hypothetical protein YP_734565.1 2899541 R 60480 CDS YP_734566.1 113970773 4253009 complement(2900534..2901145) 1 NC_008321.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 2901145 ribA 4253009 ribA Shewanella sp. MR-4 GTP cyclohydrolase II YP_734566.1 2900534 R 60480 CDS YP_734567.1 113970774 4253010 complement(2901409..2901765) 1 NC_008321.1 KEGG: son:SO2832 hypothetical protein; hypothetical protein 2901765 4253010 Shewmr4_2439 Shewanella sp. MR-4 hypothetical protein YP_734567.1 2901409 R 60480 CDS YP_734568.1 113970775 4253011 complement(2901891..2902352) 1 NC_008321.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 2902352 nrdG 4253011 nrdG Shewanella sp. MR-4 anaerobic ribonucleotide reductase-activating protein YP_734568.1 2901891 R 60480 CDS YP_734569.1 113970776 4253012 complement(2902458..2904575) 1 NC_008321.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2904575 4253012 Shewmr4_2441 Shewanella sp. MR-4 anaerobic ribonucleoside triphosphate reductase YP_734569.1 2902458 R 60480 CDS YP_734570.1 113970777 4253013 complement(2904903..2905622) 1 NC_008321.1 KEGG: son:SO2835 hypothetical protein; hypothetical protein 2905622 4253013 Shewmr4_2442 Shewanella sp. MR-4 hypothetical protein YP_734570.1 2904903 R 60480 CDS YP_734571.1 113970778 4253014 complement(2905708..2906655) 1 NC_008321.1 PFAM: Patatin; KEGG: son:SO2836 hypothetical protein; patatin 2906655 4253014 Shewmr4_2443 Shewanella sp. MR-4 patatin YP_734571.1 2905708 R 60480 CDS YP_734572.1 113970779 4253015 2906983..2908332 1 NC_008321.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2838 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase domain-containing protein 2908332 4253015 Shewmr4_2444 Shewanella sp. MR-4 DEAD/DEAH box helicase domain-containing protein YP_734572.1 2906983 D 60480 CDS YP_734573.1 113970780 4253016 2908431..2908868 1 NC_008321.1 KEGG: son:SO2839 hypothetical protein; hypothetical protein 2908868 4253016 Shewmr4_2445 Shewanella sp. MR-4 hypothetical protein YP_734573.1 2908431 D 60480 CDS YP_734574.1 113970781 4253017 2908925..2909434 1 NC_008321.1 PFAM: protein of unknown function DUF45; KEGG: son:SO2840 hypothetical protein; hypothetical protein 2909434 4253017 Shewmr4_2446 Shewanella sp. MR-4 hypothetical protein YP_734574.1 2908925 D 60480 CDS YP_734575.1 113970782 4253018 2909560..2910018 1 NC_008321.1 KEGG: son:SO2841 hypothetical protein; hypothetical protein 2910018 4253018 Shewmr4_2447 Shewanella sp. MR-4 hypothetical protein YP_734575.1 2909560 D 60480 CDS YP_734576.1 113970783 4253019 complement(2910369..2911664) 1 NC_008321.1 PFAM: peptidase M23B; Opacity-associated protein A; KEGG: son:SO2842 peptidase, M23/M37 family; peptidase M23B 2911664 4253019 Shewmr4_2448 Shewanella sp. MR-4 peptidase M23B YP_734576.1 2910369 R 60480 CDS YP_734577.1 113970784 4253020 complement(2911937..2914993) 1 NC_008321.1 PFAM: SMC domain protein; KEGG: son:SO2843 exonuclease SbcC, putative; SMC domain-containing protein 2914993 4253020 Shewmr4_2449 Shewanella sp. MR-4 SMC domain-containing protein YP_734577.1 2911937 R 60480 CDS YP_734578.1 113970785 4253021 complement(2914990..2916192) 1 NC_008321.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: son:SO2844 exonuclease SbcD, putative; exodeoxyribonuclease I subunit D 2916192 4253021 Shewmr4_2450 Shewanella sp. MR-4 exodeoxyribonuclease I subunit D YP_734578.1 2914990 R 60480 CDS YP_734579.1 113970786 4253022 complement(2916474..2917283) 1 NC_008321.1 PFAM: protein of unknown function DUF81; KEGG: son:SO2846 hypothetical protein; hypothetical protein 2917283 4253022 Shewmr4_2451 Shewanella sp. MR-4 hypothetical protein YP_734579.1 2916474 R 60480 CDS YP_734580.1 113970787 4253023 2917332..2918294 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2847 transcriptional regulator, LysR family; LysR family transcriptional regulator 2918294 4253023 Shewmr4_2452 Shewanella sp. MR-4 LysR family transcriptional regulator YP_734580.1 2917332 D 60480 CDS YP_734581.1 113970788 4253024 complement(2918348..2918734) 1 NC_008321.1 PFAM: protein of unknown function DUF1260; KEGG: son:SO1836 hypothetical protein; hypothetical protein 2918734 4253024 Shewmr4_2453 Shewanella sp. MR-4 hypothetical protein YP_734581.1 2918348 R 60480 CDS YP_734582.1 113970789 4253025 complement(2918757..2918987) 1 NC_008321.1 PFAM: RNA-binding S4 domain protein; KEGG: sdn:Sden_2510 RNA-binding S4; RNA-binding S4 domain-containing protein 2918987 4253025 Shewmr4_2454 Shewanella sp. MR-4 RNA-binding S4 domain-containing protein YP_734582.1 2918757 R 60480 CDS YP_734583.1 113970790 4253026 complement(2919058..2919594) 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1834 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 2919594 4253026 Shewmr4_2455 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_734583.1 2919058 R 60480 CDS YP_734584.1 113970791 4253027 complement(2919669..2919947) 1 NC_008321.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1832 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase 2919947 4253027 Shewmr4_2456 Shewanella sp. MR-4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_734584.1 2919669 R 60480 CDS YP_734585.1 113970792 4253028 complement(2920127..2921956) 1 NC_008321.1 PFAM: protein of unknown function DUF885; KEGG: son:SO1831 hypothetical protein; hypothetical protein 2921956 4253028 Shewmr4_2457 Shewanella sp. MR-4 hypothetical protein YP_734585.1 2920127 R 60480 CDS YP_734586.1 113970793 4253029 2922037..2922546 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1830 GGDEF domain protein; diguanylate cyclase 2922546 4253029 Shewmr4_2458 Shewanella sp. MR-4 diguanylate cyclase YP_734586.1 2922037 D 60480 CDS YP_734587.1 113970794 4253030 complement(2922598..2923845) 1 NC_008321.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO1829 TPR domain protein; TPR repeat-containing protein 2923845 4253030 Shewmr4_2459 Shewanella sp. MR-4 TPR repeat-containing protein YP_734587.1 2922598 R 60480 CDS YP_734588.1 113970795 4253031 complement(2923848..2924471) 1 NC_008321.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO1828 TonB2 protein; TonB family protein 2924471 4253031 Shewmr4_2460 Shewanella sp. MR-4 TonB family protein YP_734588.1 2923848 R 60480 CDS YP_734589.1 113970796 4253032 complement(2924473..2924877) 1 NC_008321.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO1827 TonB system transport protein ExbD2; biopolymer transport protein ExbD/TolR 2924877 4253032 Shewmr4_2461 Shewanella sp. MR-4 biopolymer transport protein ExbD/TolR YP_734589.1 2924473 R 60480 CDS YP_734590.1 113970797 4253033 complement(2924891..2925418) 1 NC_008321.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: sdn:Sden_2423 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2925418 4253033 Shewmr4_2462 Shewanella sp. MR-4 MotA/TolQ/ExbB proton channel YP_734590.1 2924891 R 60480 CDS YP_734591.1 113970798 4253034 complement(2925418..2926773) 1 NC_008321.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO1825 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 2926773 4253034 Shewmr4_2463 Shewanella sp. MR-4 MotA/TolQ/ExbB proton channel YP_734591.1 2925418 R 60480 CDS YP_734592.1 113970799 4253035 complement(2926773..2927555) 1 NC_008321.1 KEGG: sdn:Sden_2425 hypothetical protein; hypothetical protein 2927555 4253035 Shewmr4_2464 Shewanella sp. MR-4 hypothetical protein YP_734592.1 2926773 R 60480 CDS YP_734593.1 113970800 4253036 complement(2928335..2929549) 1 NC_008321.1 PFAM: transposase, IS4 family protein; KEGG: son:SO4437 ISSod3, transposase; IS4 family transposase 2929549 4253036 Shewmr4_2465 Shewanella sp. MR-4 IS4 family transposase YP_734593.1 2928335 R 60480 CDS YP_734594.1 113970801 4253037 complement(2930747..2931181) 1 NC_008321.1 PFAM: transposase IS200-family protein; KEGG: vch:VCA0275 IS1004 transposase; transposase IS200-family protein 2931181 4253037 Shewmr4_2466 Shewanella sp. MR-4 transposase IS200-family protein YP_734594.1 2930747 R 60480 CDS YP_734595.1 113970802 4253038 complement(2931349..2934072) 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_3757 TonB-dependent receptor; TonB-dependent receptor 2934072 4253038 Shewmr4_2467 Shewanella sp. MR-4 TonB-dependent receptor YP_734595.1 2931349 R 60480 CDS YP_734596.1 113970803 4253039 complement(2934350..2935558) 1 NC_008321.1 PFAM: porin, Gram-negative type; KEGG: son:SO1821 outer membrane porin, putative; porin 2935558 4253039 Shewmr4_2468 Shewanella sp. MR-4 porin YP_734596.1 2934350 R 60480 CDS YP_734597.1 113970804 4253040 complement(2935779..2938211) 1 NC_008321.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 2938211 4253040 Shewmr4_2469 Shewanella sp. MR-4 DNA polymerase II YP_734597.1 2935779 R 60480 CDS YP_734598.1 113970805 4253041 2938352..2940424 1 NC_008321.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 2940424 dinG 4253041 dinG Shewanella sp. MR-4 ATP-dependent DNA helicase DinG YP_734598.1 2938352 D 60480 CDS YP_734599.1 113970806 4253042 2940434..2941207 1 NC_008321.1 PFAM: protein of unknown function DUF81; KEGG: son:SO1818 hypothetical protein; hypothetical protein 2941207 4253042 Shewmr4_2471 Shewanella sp. MR-4 hypothetical protein YP_734599.1 2940434 D 60480 CDS YP_734600.1 113970807 4253043 2941198..2941866 1 NC_008321.1 KEGG: son:SO1817 primosomal replication protein N'', putative; primosomal replication protein N'' 2941866 4253043 Shewmr4_2472 Shewanella sp. MR-4 primosomal replication protein N'' YP_734600.1 2941198 D 60480 CDS YP_734601.1 113970808 4253044 2941876..2942568 1 NC_008321.1 KEGG: son:SO1816 hypothetical protein; hypothetical protein 2942568 4253044 Shewmr4_2473 Shewanella sp. MR-4 hypothetical protein YP_734601.1 2941876 D 60480 CDS YP_734602.1 113970809 4253045 2942574..2943476 1 NC_008321.1 PFAM: histone deacetylase superfamily; KEGG: son:SO1815 histone deacetylase/AcuC/AphA family protein; histone deacetylase superfamily protein 2943476 4253045 Shewmr4_2474 Shewanella sp. MR-4 histone deacetylase superfamily protein YP_734602.1 2942574 D 60480 CDS YP_734603.1 113970810 4253046 2943510..2943797 1 NC_008321.1 KEGG: son:SO1814 hypothetical protein; hypothetical protein 2943797 4253046 Shewmr4_2475 Shewanella sp. MR-4 hypothetical protein YP_734603.1 2943510 D 60480 CDS YP_734604.1 113970811 4253047 complement(2944262..2944627) 1 NC_008321.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: son:SO1813 DNA-binding protein, putative; helix-hairpin-helix repeat-containing competence protein ComEA 2944627 4253047 Shewmr4_2476 Shewanella sp. MR-4 helix-hairpin-helix repeat-containing competence protein ComEA YP_734604.1 2944262 R 60480 CDS YP_734605.1 113970812 4253048 complement(2944868..2946061) 1 NC_008321.1 KEGG: son:SO1812 methionine gamma-lyase; TIGRFAM: methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; methionine gamma-lyase 2946061 4253048 Shewmr4_2477 Shewanella sp. MR-4 methionine gamma-lyase YP_734605.1 2944868 R 60480 CDS YP_734606.1 113970813 4253049 complement(2946380..2947582) 1 NC_008321.1 PFAM: conserved hypothetical protein 1620; KEGG: son:SO1811 hypothetical protein; hypothetical protein 2947582 4253049 Shewmr4_2478 Shewanella sp. MR-4 hypothetical protein YP_734606.1 2946380 R 60480 CDS YP_734607.1 113970814 4253050 complement(2947579..2949039) 1 NC_008321.1 PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: son:SO1810 hypothetical ATPase; hypothetical protein 2949039 4253050 Shewmr4_2479 Shewanella sp. MR-4 hypothetical protein YP_734607.1 2947579 R 60480 CDS YP_734608.1 113970815 4253051 complement(2949134..2949520) 1 NC_008321.1 PFAM: PspC domain protein; KEGG: son:SO1809 phage shock protein C; phage shock protein C, PspC 2949520 4253051 Shewmr4_2480 Shewanella sp. MR-4 phage shock protein C, PspC YP_734608.1 2949134 R 60480 CDS YP_734609.1 113970816 4253052 complement(2949507..2949740) 1 NC_008321.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 2949740 pspB 4253052 pspB Shewanella sp. MR-4 phage shock protein B YP_734609.1 2949507 R 60480 CDS YP_734610.1 113970817 4253053 complement(2949765..2950448) 1 NC_008321.1 PFAM: PspA/IM30 family protein; KEGG: son:SO1807 phage shock protein A; phage shock protein A, PspA 2950448 4253053 Shewmr4_2482 Shewanella sp. MR-4 phage shock protein A, PspA YP_734610.1 2949765 R 60480 CDS YP_734611.1 113970818 4253054 2950626..2951714 1 NC_008321.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO1806 psp operon transcriptional activator; Fis family transcriptional regulator 2951714 4253054 Shewmr4_2483 Shewanella sp. MR-4 Fis family transcriptional regulator YP_734611.1 2950626 D 60480 CDS YP_734612.1 113970819 4253055 2951784..2953409 1 NC_008321.1 PFAM: extracellular solute-binding protein, family 5; KEGG: son:SO1805 peptide ABC transporter, periplasmic peptide-binding protein; extracellular solute-binding protein 2953409 4253055 Shewmr4_2484 Shewanella sp. MR-4 extracellular solute-binding protein YP_734612.1 2951784 D 60480 CDS YP_734613.1 113970820 4253056 2953409..2954440 1 NC_008321.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1804 peptide ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 2954440 4253056 Shewmr4_2485 Shewanella sp. MR-4 binding-protein-dependent transport systems inner membrane component YP_734613.1 2953409 D 60480 CDS YP_734614.1 113970821 4253057 2954427..2955317 1 NC_008321.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1803 peptide ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 2955317 4253057 Shewmr4_2486 Shewanella sp. MR-4 binding-protein-dependent transport systems inner membrane component YP_734614.1 2954427 D 60480 CDS YP_734615.1 113970822 4253058 2955321..2956328 1 NC_008321.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; KEGG: son:SO1802 peptide ABC transporter, ATP-binding protein; oligopeptide/dipeptide ABC transporter ATPase subunit 2956328 4253058 Shewmr4_2487 Shewanella sp. MR-4 oligopeptide/dipeptide ABC transporter ATPase subunit YP_734615.1 2955321 D 60480 CDS YP_734616.1 113970823 4253059 2956309..2957094 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein; ABC transporter-like protein 2957094 4253059 Shewmr4_2488 Shewanella sp. MR-4 ABC transporter-like protein YP_734616.1 2956309 D 60480 CDS YP_734617.2 228898760 4253060 2957200..2958402 1 NC_008321.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 2958402 4253060 Shewmr4_2489 Shewanella sp. MR-4 trans-2-enoyl-CoA reductase YP_734617.2 2957200 D 60480 CDS YP_734618.1 113970825 4253061 2958518..2958730 1 NC_008321.1 TIGRFAM: Molybdenum-pterin binding; PFAM: TOBE domain protein; KEGG: mma:MM0224 molybdenum-pterin-binding-protein; molybdenum-pterin binding 2958730 4253061 Shewmr4_2490 Shewanella sp. MR-4 molybdenum-pterin binding YP_734618.1 2958518 D 60480 CDS YP_734619.1 113970826 4253062 complement(2958879..2960744) 1 NC_008321.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1798 peptidyl-prolyl cis-trans isomerase D; PpiC-type peptidyl-prolyl cis-trans isomerase 2960744 4253062 Shewmr4_2491 Shewanella sp. MR-4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_734619.1 2958879 R 60480 CDS YP_734620.1 113970827 4253063 complement(2960971..2961243) 1 NC_008321.1 PFAM: histone family protein DNA-binding protein; KEGG: son:SO1797 DNA-binding protein, HU family; histone family protein DNA-binding protein 2961243 4253063 Shewmr4_2492 Shewanella sp. MR-4 histone family protein DNA-binding protein YP_734620.1 2960971 R 60480 CDS YP_734621.1 113970828 4253064 complement(2961503..2963860) 1 NC_008321.1 KEGG: son:SO1796 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Lon-A peptidase 2963860 4253064 Shewmr4_2493 Shewanella sp. MR-4 Lon-A peptidase YP_734621.1 2961503 R 60480 CDS YP_734622.1 113970829 4253065 complement(2963993..2965273) 1 NC_008321.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2965273 clpX 4253065 clpX Shewanella sp. MR-4 ATP-dependent protease ATP-binding subunit ClpX YP_734622.1 2963993 R 60480 CDS YP_734623.1 113970830 4253066 complement(2965373..2965981) 1 NC_008321.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2965981 clpP 4253066 clpP Shewanella sp. MR-4 ATP-dependent Clp protease proteolytic subunit YP_734623.1 2965373 R 60480 CDS YP_734624.1 113970831 4253067 complement(2966071..2967375) 1 NC_008321.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2967375 tig 4253067 tig Shewanella sp. MR-4 trigger factor YP_734624.1 2966071 R 60480 CDS YP_734625.1 113970832 4253068 2968253..2969107 1 NC_008321.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2969107 4253068 Shewmr4_2497 Shewanella sp. MR-4 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_734625.1 2968253 D 60480 CDS YP_734626.1 113970833 4253069 complement(2969331..2970716) 1 NC_008321.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2970716 cysS 4253069 cysS Shewanella sp. MR-4 cysteinyl-tRNA synthetase YP_734626.1 2969331 R 60480 CDS YP_734627.1 113970834 4253070 2970851..2971342 1 NC_008321.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO1790 peptidyl-prolyl cis-trans isomerase B; peptidyl-prolyl cis-trans isomerase, cyclophilin type 2971342 4253070 Shewmr4_2499 Shewanella sp. MR-4 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_734627.1 2970851 D 60480 CDS YP_734628.1 113970835 4253071 2971352..2972071 1 NC_008321.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 2972071 4253071 Shewmr4_2500 Shewanella sp. MR-4 UDP-2,3-diacylglucosamine hydrolase YP_734628.1 2971352 D 60480 CDS YP_734629.1 113970836 4253072 complement(2972159..2972929) 1 NC_008321.1 PFAM: tRNA--hydroxylase; KEGG: son:SO1788 tRNA hydroxylase; tRNA--hydroxylase 2972929 4253072 Shewmr4_2501 Shewanella sp. MR-4 tRNA--hydroxylase YP_734629.1 2972159 R 60480 CDS YP_734630.1 113970837 4253073 2973210..2973806 1 NC_008321.1 PFAM: protein of unknown function DUF1282; KEGG: son:SO1787 hypothetical protein; hypothetical protein 2973806 4253073 Shewmr4_2502 Shewanella sp. MR-4 hypothetical protein YP_734630.1 2973210 D 60480 CDS YP_734631.1 113970838 4253074 complement(2973999..2975669) 1 NC_008321.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 2975669 4253074 Shewmr4_2503 Shewanella sp. MR-4 glutaminyl-tRNA synthetase YP_734631.1 2973999 R 60480 CDS YP_734632.1 113970839 4253075 complement(2975853..2978147) 1 NC_008321.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; Miro domain protein; KEGG: son:SO1784 ferrous iron transport protein B; ferrous iron transport protein B 2978147 4253075 Shewmr4_2504 Shewanella sp. MR-4 ferrous iron transport protein B YP_734632.1 2975853 R 60480 CDS YP_734633.1 113970840 4253076 complement(2978140..2978379) 1 NC_008321.1 PFAM: FeoA family protein; KEGG: son:SO1783 ferrous iron transport protein A; FeoA family protein 2978379 4253076 Shewmr4_2505 Shewanella sp. MR-4 FeoA family protein YP_734633.1 2978140 R 60480 CDS YP_734634.1 113970841 4253077 2978806..2979771 1 NC_008321.1 TIGRFAM: cytochrome C family protein; KEGG: son:SO1782 decaheme cytochrome c MtrD; cytochrome C family protein 2979771 4253077 Shewmr4_2506 Shewanella sp. MR-4 cytochrome C family protein YP_734634.1 2978806 D 60480 CDS YP_734635.1 113970842 4253078 2979785..2981923 1 NC_008321.1 KEGG: son:SO1781 outer membrane protein, putative; outer membrane protein 2981923 4253078 Shewmr4_2507 Shewanella sp. MR-4 outer membrane protein YP_734635.1 2979785 D 60480 CDS YP_734636.1 113970843 4253079 2981959..2983878 1 NC_008321.1 KEGG: son:SO1780 decaheme cytochrome c MtrF; decaheme cytochrome c MtrF 2983878 4253079 Shewmr4_2508 Shewanella sp. MR-4 decaheme cytochrome c MtrF YP_734636.1 2981959 D 60480 CDS YP_734637.1 113970844 4253080 2984125..2986320 1 NC_008321.1 KEGG: son:SO1779 decaheme cytochrome c; decaheme cytochrome c 2986320 4253080 Shewmr4_2509 Shewanella sp. MR-4 decaheme cytochrome c YP_734637.1 2984125 D 60480 CDS YP_734638.1 113970845 4253081 2986653..2988620 1 NC_008321.1 KEGG: son:SO1778 decaheme cytochrome c; decaheme cytochrome c 2988620 4253081 Shewmr4_2510 Shewanella sp. MR-4 decaheme cytochrome c YP_734638.1 2986653 D 60480 CDS YP_734639.1 113970846 4253082 2988689..2989678 1 NC_008321.1 TIGRFAM: cytochrome C family protein; KEGG: son:SO1777 decaheme cytochrome c MtrA; cytochrome C family protein 2989678 4253082 Shewmr4_2511 Shewanella sp. MR-4 cytochrome C family protein YP_734639.1 2988689 D 60480 CDS YP_734640.1 113970847 4253083 2989691..2991778 1 NC_008321.1 KEGG: son:SO1776 outer membrane protein precursor MtrB; outer membrane protein precursor MtrB 2991778 4253083 Shewmr4_2512 Shewanella sp. MR-4 outer membrane protein precursor MtrB YP_734640.1 2989691 D 60480 CDS YP_734641.1 113970848 4253084 2991998..2992621 1 NC_008321.1 hypothetical protein 2992621 4253084 Shewmr4_2513 Shewanella sp. MR-4 hypothetical protein YP_734641.1 2991998 D 60480 CDS YP_734642.1 113970849 4253085 2992621..2993343 1 NC_008321.1 KEGG: son:SO1775 phage SPO1 DNA polymerase domain protein; phage SPO1 DNA polymerase domain-containing protein 2993343 4253085 Shewmr4_2514 Shewanella sp. MR-4 phage SPO1 DNA polymerase domain-containing protein YP_734642.1 2992621 D 60480 CDS YP_734643.1 113970850 4253086 complement(2993472..2994974) 1 NC_008321.1 PFAM: peptidase M4, thermolysin; Propeptide, PepSY amd peptidase M4; KEGG: pae:PA3724 elastase LasB; vibriolysin 2994974 4253086 Shewmr4_2515 Shewanella sp. MR-4 vibriolysin YP_734643.1 2993472 R 60480 CDS YP_734644.1 113970851 4253087 2995206..2996438 1 NC_008321.1 PFAM: sugar diacid recognition domain protein; KEGG: son:SO1774 hypothetical sugar diacid utilization regulator; CdaR family transcriptional regulator 2996438 4253087 Shewmr4_2516 Shewanella sp. MR-4 CdaR family transcriptional regulator YP_734644.1 2995206 D 60480 CDS YP_734645.1 113970852 4253088 2996676..2997674 1 NC_008321.1 PFAM: Catalase domain protein; KEGG: son:SO1771.2 hypothetical catalase; catalase domain-containing protein 2997674 4253088 Shewmr4_2517 Shewanella sp. MR-4 catalase domain-containing protein YP_734645.1 2996676 D 60480 CDS YP_734646.1 113970853 4253089 2997941..2999299 1 NC_008321.1 PFAM: Gluconate transporter; Citrate transporter; KEGG: son:SO1771 permease, GntP family; gluconate transporter 2999299 4253089 Shewmr4_2518 Shewanella sp. MR-4 gluconate transporter YP_734646.1 2997941 D 60480 CDS YP_734647.1 113970854 4253090 2999358..3000503 1 NC_008321.1 KEGG: son:SO1770 glycerate kinase; TIGRFAM: glycerate kinase; PFAM: glycerate kinase; glycerate kinase 3000503 4253090 Shewmr4_2519 Shewanella sp. MR-4 glycerate kinase YP_734647.1 2999358 D 60480 CDS YP_734648.1 113970855 4253091 3000758..3002407 1 NC_008321.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: son:SO1769 glutamate decarboxylase, putative; pyridoxal-dependent decarboxylase 3002407 4253091 Shewmr4_2520 Shewanella sp. MR-4 pyridoxal-dependent decarboxylase YP_734648.1 3000758 D 60480 CDS YP_734649.1 113970856 4253092 complement(3002870..3005479) 1 NC_008321.1 KEGG: bbr:BB0911 putative serine protease; hypothetical protein 3005479 4253092 Shewmr4_2521 Shewanella sp. MR-4 hypothetical protein YP_734649.1 3002870 R 60480 CDS YP_734650.1 113970857 4253093 complement(3005493..3006467) 1 NC_008321.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: bbr:BB0910 putative ATPase; ATPase central domain-containing protein 3006467 4253093 Shewmr4_2522 Shewanella sp. MR-4 ATPase central domain-containing protein YP_734650.1 3005493 R 60480 CDS YP_734651.1 113970858 4253094 3006838..3007302 1 NC_008321.1 KEGG: sdn:Sden_0571 hypothetical protein; hypothetical protein 3007302 4253094 Shewmr4_2523 Shewanella sp. MR-4 hypothetical protein YP_734651.1 3006838 D 60480 CDS YP_734652.1 113970859 4253095 3007382..3007837 1 NC_008321.1 hypothetical protein 3007837 4253095 Shewmr4_2524 Shewanella sp. MR-4 hypothetical protein YP_734652.1 3007382 D 60480 CDS YP_734653.1 113970860 4253096 3007937..3008317 1 NC_008321.1 hypothetical protein 3008317 4253096 Shewmr4_2525 Shewanella sp. MR-4 hypothetical protein YP_734653.1 3007937 D 60480 CDS YP_734654.1 113970861 4253097 3008528..3009031 1 NC_008321.1 KEGG: son:SO1763 streptogramin A acetyl transferase; streptogramin A acetyl transferase 3009031 4253097 Shewmr4_2526 Shewanella sp. MR-4 streptogramin A acetyl transferase YP_734654.1 3008528 D 60480 CDS YP_734655.1 113970862 4253098 3009201..3010037 1 NC_008321.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO1762 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 3010037 4253098 Shewmr4_2527 Shewanella sp. MR-4 AraC family transcriptional regulator YP_734655.1 3009201 D 60480 CDS YP_734656.1 113970863 4253099 3010103..3010870 1 NC_008321.1 PFAM: AzlC family protein; KEGG: son:SO1760 AzlC family protein; AzlC family protein 3010870 4253099 Shewmr4_2528 Shewanella sp. MR-4 AzlC family protein YP_734656.1 3010103 D 60480 CDS YP_734657.1 113970864 4253100 3010867..3011169 1 NC_008321.1 PFAM: branched-chain amino acid transport; KEGG: son:SO1759 hypothetical protein; branched-chain amino acid transport 3011169 4253100 Shewmr4_2529 Shewanella sp. MR-4 branched-chain amino acid transport YP_734657.1 3010867 D 60480 CDS YP_734658.1 113970865 4253101 complement(3011159..3012517) 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_3038 multiple antibiotic resistance (MarC)-related proteins; major facilitator transporter 3012517 4253101 Shewmr4_2530 Shewanella sp. MR-4 major facilitator transporter YP_734658.1 3011159 R 60480 CDS YP_734659.1 113970866 4253102 complement(3012639..3013808) 1 NC_008321.1 KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine 6-phosphate deacetylase 3013808 4253102 Shewmr4_2531 Shewanella sp. MR-4 N-acetylglucosamine 6-phosphate deacetylase YP_734659.1 3012639 R 60480 CDS YP_734660.1 113970867 4253103 complement(3013798..3014724) 1 NC_008321.1 PFAM: ROK family protein; KEGG: yps:YPTB2439 hypothetical protein; N-acetylglucosamine kinase 3014724 4253103 Shewmr4_2532 Shewanella sp. MR-4 N-acetylglucosamine kinase YP_734660.1 3013798 R 60480 CDS YP_734661.1 113970868 4253104 complement(3014745..3015905) 1 NC_008321.1 PFAM: sugar isomerase (SIS); KEGG: vvy:VVA1515 predicted phosphosugar isomerase; sugar isomerase (SIS) 3015905 4253104 Shewmr4_2533 Shewanella sp. MR-4 sugar isomerase (SIS) YP_734661.1 3014745 R 60480 CDS YP_734662.1 113970869 4253105 complement(3015913..3017199) 1 NC_008321.1 PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; KEGG: ecj:JW3101 tagatose 6-phosphate aldolase 1, kbaZ subunit; tagatose-bisphosphate aldolase noncatalytic subunit 3017199 4253105 Shewmr4_2534 Shewanella sp. MR-4 tagatose-bisphosphate aldolase noncatalytic subunit YP_734662.1 3015913 R 60480 CDS YP_734663.1 113970870 4253106 complement(3017205..3018575) 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase domain protein; KEGG: son:SO3120 oxidoreductase, Gfo/Idh/MocA family; twin-arginine translocation pathway signal 3018575 4253106 Shewmr4_2535 Shewanella sp. MR-4 twin-arginine translocation pathway signal YP_734663.1 3017205 R 60480 CDS YP_734664.1 113970871 4253107 complement(3018588..3019373) 1 NC_008321.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: ppr:PBPRB0140 putative DeoR-family regulatory protein; DeoR family transcriptional regulator 3019373 4253107 Shewmr4_2536 Shewanella sp. MR-4 DeoR family transcriptional regulator YP_734664.1 3018588 R 60480 CDS YP_734665.1 113970872 4253108 3019708..3022563 1 NC_008321.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_0238 TonB-dependent receptor; TonB-dependent receptor 3022563 4253108 Shewmr4_2537 Shewanella sp. MR-4 TonB-dependent receptor YP_734665.1 3019708 D 60480 CDS YP_734666.1 113970873 4253109 complement(3022611..3023309) 1 NC_008321.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: son:SO1758 hypothetical protein; helix-turn-helix, type 11 domain-containing protein 3023309 4253109 Shewmr4_2538 Shewanella sp. MR-4 helix-turn-helix, type 11 domain-containing protein YP_734666.1 3022611 R 60480 CDS YP_734667.1 113970874 4253110 complement(3023420..3023869) 1 NC_008321.1 PFAM: transcription activator, effector binding; KEGG: son:SO1757 hypothetical protein; transcription activator, effector binding 3023869 4253110 Shewmr4_2539 Shewanella sp. MR-4 transcription activator, effector binding YP_734667.1 3023420 R 60480 CDS YP_734668.1 113970875 4253111 complement(3024039..3024422) 1 NC_008321.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO1756 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 3024422 4253111 Shewmr4_2540 Shewanella sp. MR-4 glyoxalase/bleomycin resistance protein/dioxygenase YP_734668.1 3024039 R 60480 CDS YP_734669.1 113970876 4253112 complement(3024576..3026297) 1 NC_008321.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: son:SO1755 phosphoglucomutase/phosphomannomutase family protein; phosphoglucomutase/phosphomannomutase alpha/beta/subunit 3026297 4253112 Shewmr4_2541 Shewanella sp. MR-4 phosphoglucomutase/phosphomannomutase alpha/beta/subunit YP_734669.1 3024576 R 60480 CDS YP_734670.1 113970877 4253113 complement(3026560..3026865) 1 NC_008321.1 KEGG: son:SO1753 hypothetical protein; hypothetical protein 3026865 4253113 Shewmr4_2542 Shewanella sp. MR-4 hypothetical protein YP_734670.1 3026560 R 60480 CDS YP_734671.1 113970878 4253114 complement(3027304..3028287) 1 NC_008321.1 PFAM: Integral membrane protein TerC; KEGG: son:SO1747 membrane protein, putative; integral membrane protein TerC 3028287 4253114 Shewmr4_2543 Shewanella sp. MR-4 integral membrane protein TerC YP_734671.1 3027304 R 60480 CDS YP_734672.1 113970879 4253115 complement(3028758..3028997) 1 NC_008321.1 KEGG: son:SO1746 hypothetical protein; hypothetical protein 3028997 4253115 Shewmr4_2544 Shewanella sp. MR-4 hypothetical protein YP_734672.1 3028758 R 60480 CDS YP_734673.1 113970880 4253116 complement(3029074..3030201) 1 NC_008321.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO1745 3-beta hydroxysteroid dehydrogenase/isomerase family protein; 3-beta hydroxysteroid dehydrogenase/isomerase 3030201 4253116 Shewmr4_2545 Shewanella sp. MR-4 3-beta hydroxysteroid dehydrogenase/isomerase YP_734673.1 3029074 R 60480 CDS YP_734674.1 113970881 4253117 complement(3030345..3032186) 1 NC_008321.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 3032186 4253117 Shewmr4_2546 Shewanella sp. MR-4 peptide synthase YP_734674.1 3030345 R 60480 CDS YP_734675.1 113970882 4253118 complement(3032186..3033205) 1 NC_008321.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO1743 hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold domain-containing protein 3033205 4253118 Shewmr4_2547 Shewanella sp. MR-4 alpha/beta hydrolase fold domain-containing protein YP_734675.1 3032186 R 60480 CDS YP_734676.1 113970883 4253119 complement(3033307..3034356) 1 NC_008321.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 3034356 4253119 Shewmr4_2548 Shewanella sp. MR-4 3-oxoacyl-(acyl carrier protein) synthase III YP_734676.1 3033307 R 60480 CDS YP_734677.1 113970884 4253120 complement(3034611..3035978) 1 NC_008321.1 KEGG: son:SO1741 hypothetical protein; hypothetical protein 3035978 4253120 Shewmr4_2549 Shewanella sp. MR-4 hypothetical protein YP_734677.1 3034611 R 60480 CDS YP_734678.1 113970885 4253121 3036266..3036499 1 NC_008321.1 PFAM: protein of unknown function DUF1289; KEGG: son:SO1739 hypothetical protein; hypothetical protein 3036499 4253121 Shewmr4_2550 Shewanella sp. MR-4 hypothetical protein YP_734678.1 3036266 D 60480 CDS YP_734679.1 113970886 4253122 complement(3036526..3036888) 1 NC_008321.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: son:SO1738 hypothetical protein; hypothetical protein 3036888 4253122 Shewmr4_2551 Shewanella sp. MR-4 hypothetical protein YP_734679.1 3036526 R 60480 CDS YP_734680.1 113970887 4253123 complement(3036976..3038952) 1 NC_008321.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: sdn:Sden_1362 choline/carnitine/betaine transport; choline/carnitine/betaine transporter 3038952 4253123 Shewmr4_2552 Shewanella sp. MR-4 choline/carnitine/betaine transporter YP_734680.1 3036976 R 60480 CDS YP_734681.1 113970888 4253124 complement(3039635..3040240) 1 NC_008321.1 KEGG: son:SO1736 hypothetical protein; hypothetical protein 3040240 4253124 Shewmr4_2553 Shewanella sp. MR-4 hypothetical protein YP_734681.1 3039635 R 60480 CDS YP_734682.1 113970889 4253125 3040396..3040791 1 NC_008321.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO1734 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 3040791 4253125 Shewmr4_2554 Shewanella sp. MR-4 glyoxalase/bleomycin resistance protein/dioxygenase YP_734682.1 3040396 D 60480 CDS YP_734683.1 113970890 4253126 3040916..3041893 1 NC_008321.1 PFAM: protein of unknown function DUF1568; KEGG: son:SO1546 hypothetical protein; hypothetical protein 3041893 4253126 Shewmr4_2555 Shewanella sp. MR-4 hypothetical protein YP_734683.1 3040916 D 60480 CDS YP_734684.1 113970891 4253127 complement(3042633..3043715) 1 NC_008321.1 KEGG: son:SO4661 hypothetical protein; hypothetical protein 3043715 4253127 Shewmr4_2556 Shewanella sp. MR-4 hypothetical protein YP_734684.1 3042633 R 60480 CDS YP_734685.1 113970892 4253128 complement(3044033..3044743) 1 NC_008321.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 3044743 4253128 Shewmr4_2557 Shewanella sp. MR-4 transcriptional regulator PhoU YP_734685.1 3044033 R 60480 CDS YP_734686.1 113970893 4253129 complement(3044871..3045689) 1 NC_008321.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 3045689 4253129 Shewmr4_2558 Shewanella sp. MR-4 phosphate transporter ATP-binding protein YP_734686.1 3044871 R 60480 CDS YP_734687.1 113970894 4253130 complement(3045723..3047381) 1 NC_008321.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1724 phosphate ABC transporter, permease protein, putative; phosphate ABC transporter inner membrane subunit PstA 3047381 4253130 Shewmr4_2559 Shewanella sp. MR-4 phosphate ABC transporter inner membrane subunit PstA YP_734687.1 3045723 R 60480 CDS YP_734688.1 113970895 4253131 complement(3047441..3049699) 1 NC_008321.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1723 phosphate ABC transporter, permease protein, putative; binding-protein-dependent transport systems inner membrane component 3049699 4253131 Shewmr4_2560 Shewanella sp. MR-4 binding-protein-dependent transport systems inner membrane component YP_734688.1 3047441 R 60480 CDS YP_734689.1 113970896 4253132 3049899..3050399 1 NC_008321.1 PFAM: amino acid-binding ACT domain protein; KEGG: son:SO1722 ACT domain protein; ACT domain-containing protein 3050399 4253132 Shewmr4_2561 Shewanella sp. MR-4 ACT domain-containing protein YP_734689.1 3049899 D 60480 CDS YP_734690.1 113970897 4253133 complement(3050460..3051368) 1 NC_008321.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: sdn:Sden_1682 protein of unknown function DUF6, transmembrane; hypothetical protein 3051368 4253133 Shewmr4_2562 Shewanella sp. MR-4 hypothetical protein YP_734690.1 3050460 R 60480 CDS YP_734691.1 113970898 4253134 complement(3051494..3052567) 1 NC_008321.1 PFAM: putative esterase; KEGG: ilo:IL2526 predicted hydrolase of the alpha/beta superfamily; putative esterase 3052567 4253134 Shewmr4_2563 Shewanella sp. MR-4 putative esterase YP_734691.1 3051494 R 60480 CDS YP_734692.1 113970899 4253135 3052847..3053671 1 NC_008321.1 KEGG: son:SO1718 hypothetical protein; hypothetical protein 3053671 4253135 Shewmr4_2564 Shewanella sp. MR-4 hypothetical protein YP_734692.1 3052847 D 60480 CDS YP_734693.1 113970900 4253136 complement(3053896..3054294) 1 NC_008321.1 KEGG: bbr:BB1298 hypothetical protein; hypothetical protein 3054294 4253136 Shewmr4_2565 Shewanella sp. MR-4 hypothetical protein YP_734693.1 3053896 R 60480 CDS YP_734694.1 113970901 4253137 complement(3054542..3055144) 1 NC_008321.1 KEGG: son:SO1717 hypothetical protein; hypothetical protein 3055144 4253137 Shewmr4_2566 Shewanella sp. MR-4 hypothetical protein YP_734694.1 3054542 R 60480 CDS YP_734695.1 113970902 4253138 3055453..3056046 1 NC_008321.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO1716 transporter, LysE family; lysine exporter protein LysE/YggA 3056046 4253138 Shewmr4_2567 Shewanella sp. MR-4 lysine exporter protein LysE/YggA YP_734695.1 3055453 D 60480 CDS YP_734696.1 113970903 4253139 3056074..3056622 1 NC_008321.1 PFAM: protein of unknown function DUF1415; KEGG: son:SO1715 hypothetical protein; hypothetical protein 3056622 4253139 Shewmr4_2568 Shewanella sp. MR-4 hypothetical protein YP_734696.1 3056074 D 60480 CDS YP_734697.1 113970904 4253140 complement(3056760..3057182) 1 NC_008321.1 KEGG: son:SO1710 hypothetical protein; hypothetical protein 3057182 4253140 Shewmr4_2569 Shewanella sp. MR-4 hypothetical protein YP_734697.1 3056760 R 60480 CDS YP_734698.1 113970905 4253141 3057539..3059104 1 NC_008321.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: sdn:Sden_3290 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 3059104 4253141 Shewmr4_2570 Shewanella sp. MR-4 peptidase S8/S53 subtilisin kexin sedolisin YP_734698.1 3057539 D 60480 CDS YP_734699.1 113970906 4253142 complement(3059183..3060013) 1 NC_008321.1 hypothetical protein 3060013 4253142 Shewmr4_2571 Shewanella sp. MR-4 hypothetical protein YP_734699.1 3059183 R 60480 CDS YP_734700.1 113970907 4253143 complement(3060258..3061607) 1 NC_008321.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: son:SO1708 4-hydroxybutyrate coenzyme A transferase; acetyl-CoA hydrolase/transferase 3061607 4253143 Shewmr4_2572 Shewanella sp. MR-4 acetyl-CoA hydrolase/transferase YP_734700.1 3060258 R 60480 CDS YP_734701.1 113970908 4253144 complement(3061783..3062904) 1 NC_008321.1 PFAM: ABC-2 type transporter; KEGG: son:SO1707 ABC transporter, permease protein, putative; ABC-2 type transporter 3062904 4253144 Shewmr4_2573 Shewanella sp. MR-4 ABC-2 type transporter YP_734701.1 3061783 R 60480 CDS YP_734702.1 113970909 4253145 complement(3062894..3063934) 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRA2312 putative ABC-type multidrug transport system, ATPase component; ABC transporter-like protein 3063934 4253145 Shewmr4_2574 Shewanella sp. MR-4 ABC transporter-like protein YP_734702.1 3062894 R 60480 CDS YP_734703.1 113970910 4253146 complement(3063931..3064944) 1 NC_008321.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO1705 putative HlyD family secretion protein; secretion protein HlyD family protein 3064944 4253146 Shewmr4_2575 Shewanella sp. MR-4 secretion protein HlyD family protein YP_734703.1 3063931 R 60480 CDS YP_734704.1 113970911 4253147 complement(3064941..3065642) 1 NC_008321.1 PFAM: regulatory protein, TetR; KEGG: ppr:PBPRA0420 putative transcriptional regulator; TetR family transcriptional regulator 3065642 4253147 Shewmr4_2576 Shewanella sp. MR-4 TetR family transcriptional regulator YP_734704.1 3064941 R 60480 CDS YP_734705.1 113970912 4253148 complement(3065871..3066218) 1 NC_008321.1 KEGG: son:SO1702 hypothetical protein; hypothetical protein 3066218 4253148 Shewmr4_2577 Shewanella sp. MR-4 hypothetical protein YP_734705.1 3065871 R 60480 CDS YP_734706.1 113970913 4253149 3066717..3067574 1 NC_008321.1 KEGG: son:SO1701 hypothetical protein; hypothetical protein 3067574 4253149 Shewmr4_2578 Shewanella sp. MR-4 hypothetical protein YP_734706.1 3066717 D 60480 CDS YP_734707.1 113970914 4253150 3067585..3068913 1 NC_008321.1 KEGG: son:SO1700 hypothetical protein; hypothetical protein 3068913 4253150 Shewmr4_2579 Shewanella sp. MR-4 hypothetical protein YP_734707.1 3067585 D 60480 CDS YP_734708.1 113970915 4253151 3069303..3072494 1 NC_008321.1 PFAM: transcriptional regulator domain protein; KEGG: son:SO1699 transcriptional regulator; lysine decarboxylase transcriptional regulator, CadC 3072494 4253151 Shewmr4_2580 Shewanella sp. MR-4 lysine decarboxylase transcriptional regulator, CadC YP_734708.1 3069303 D 60480 CDS YP_734709.1 113970916 4253152 3072545..3072922 1 NC_008321.1 KEGG: son:SO1698 hypothetical protein; hypothetical protein 3072922 4253152 Shewmr4_2581 Shewanella sp. MR-4 hypothetical protein YP_734709.1 3072545 D 60480 CDS YP_734710.1 113970917 4253153 3073249..3074268 1 NC_008321.1 KEGG: son:SO1695 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; diguanylate cyclase 3074268 4253153 Shewmr4_2582 Shewanella sp. MR-4 diguanylate cyclase YP_734710.1 3073249 D 60480 CDS YP_734711.1 113970918 4253154 3074328..3077018 1 NC_008321.1 PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: son:SO1694 FAD-binding protein; FAD linked oxidase domain-containing protein 3077018 4253154 Shewmr4_2583 Shewanella sp. MR-4 FAD linked oxidase domain-containing protein YP_734711.1 3074328 D 60480 CDS YP_734712.1 113970919 4253155 3077195..3078091 1 NC_008321.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1692 hypothetical protein; hypothetical protein 3078091 4253155 Shewmr4_2584 Shewanella sp. MR-4 hypothetical protein YP_734712.1 3077195 D 60480 CDS YP_734713.1 113970920 4253156 3078160..3078690 1 NC_008321.1 PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: son:SO1691 lipoprotein Blc; Lipocalin family protein 3078690 4253156 Shewmr4_2585 Shewanella sp. MR-4 Lipocalin family protein YP_734713.1 3078160 D 60480 CDS YP_734714.1 113970921 4253157 complement(3078804..3080444) 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1690 ABC transporter, ATP-binding protein; ABC transporter-like protein 3080444 4253157 Shewmr4_2586 Shewanella sp. MR-4 ABC transporter-like protein YP_734714.1 3078804 R 60480 CDS YP_734715.1 113970922 4253158 complement(3080872..3083148) 1 NC_008321.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: son:SO1689 cation transport ATPase, E1-E2 family; copper-translocating P-type ATPase 3083148 4253158 Shewmr4_2587 Shewanella sp. MR-4 copper-translocating P-type ATPase YP_734715.1 3080872 R 60480 CDS YP_734716.1 113970923 4253159 3083297..3083686 1 NC_008321.1 PFAM: regulatory protein, MerR; KEGG: son:SO1687 transcriptional regulator, MerR family; MerR family transcriptional regulator 3083686 4253159 Shewmr4_2588 Shewanella sp. MR-4 MerR family transcriptional regulator YP_734716.1 3083297 D 60480 CDS YP_734717.1 113970924 4253160 complement(3083745..3085778) 1 NC_008321.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1686 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase 3085778 4253160 Shewmr4_2589 Shewanella sp. MR-4 peptidase S9 prolyl oligopeptidase YP_734717.1 3083745 R 60480 CDS YP_734718.1 113970925 4253161 complement(3085836..3086078) 1 NC_008321.1 KEGG: son:SO1685 hypothetical protein; hypothetical protein 3086078 4253161 Shewmr4_2590 Shewanella sp. MR-4 hypothetical protein YP_734718.1 3085836 R 60480 CDS YP_734719.1 113970926 4253162 complement(3086286..3087044) 1 NC_008321.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 3087044 fabG 4253162 fabG Shewanella sp. MR-4 3-ketoacyl-(acyl-carrier-protein) reductase YP_734719.1 3086286 R 60480 CDS YP_734720.1 113970927 4253163 complement(3087064..3087966) 1 NC_008321.1 KEGG: son:SO1682 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 3087966 4253163 Shewmr4_2592 Shewanella sp. MR-4 3-hydroxyisobutyrate dehydrogenase YP_734720.1 3087064 R 60480 CDS YP_734721.1 113970928 4253164 complement(3088067..3089215) 1 NC_008321.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO1681 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 3089215 4253164 Shewmr4_2593 Shewanella sp. MR-4 enoyl-CoA hydratase/isomerase YP_734721.1 3088067 R 60480 CDS YP_734722.1 113970929 4253165 complement(3089215..3089988) 1 NC_008321.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3089988 4253165 Shewmr4_2594 Shewanella sp. MR-4 enoyl-CoA hydratase YP_734722.1 3089215 R 60480 CDS YP_734723.1 113970930 4253166 complement(3090053..3091210) 1 NC_008321.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO1679 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 3091210 4253166 Shewmr4_2595 Shewanella sp. MR-4 acyl-CoA dehydrogenase domain-containing protein YP_734723.1 3090053 R 60480 CDS YP_734724.1 113970931 4253167 complement(3091375..3092874) 1 NC_008321.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: son:SO1678 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 3092874 4253167 Shewmr4_2596 Shewanella sp. MR-4 methylmalonate-semialdehyde dehydrogenase YP_734724.1 3091375 R 60480 CDS YP_734725.1 113970932 4253168 complement(3093010..3094200) 1 NC_008321.1 KEGG: son:SO1677 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferases 3094200 4253168 Shewmr4_2597 Shewanella sp. MR-4 acetyl-CoA acetyltransferases YP_734725.1 3093010 R 60480 CDS YP_734726.1 113970933 4253169 complement(3094659..3095600) 1 NC_008321.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 3095600 4253169 Shewmr4_2598 Shewanella sp. MR-4 homoserine O-succinyltransferase YP_734726.1 3094659 R 60480 CDS YP_734727.1 113970934 4253170 complement(3095670..3096104) 1 NC_008321.1 KEGG: son:SO1675 hypothetical protein; hypothetical protein 3096104 4253170 Shewmr4_2599 Shewanella sp. MR-4 hypothetical protein YP_734727.1 3095670 R 60480 CDS YP_734728.1 113970935 4253171 3096189..3096965 1 NC_008321.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO1674 short chain dehydrogenase family protein; short-chain dehydrogenase/reductase SDR 3096965 4253171 Shewmr4_2600 Shewanella sp. MR-4 short-chain dehydrogenase/reductase SDR YP_734728.1 3096189 D 60480 CDS YP_734729.1 113970936 4253172 complement(3097049..3097696) 1 NC_008321.1 receptor for colicin S4; outer membrane protein W 3097696 4253172 Shewmr4_2601 Shewanella sp. MR-4 outer membrane protein W YP_734729.1 3097049 R 60480 CDS YP_734730.1 113970937 4253173 complement(3098155..3098742) 1 NC_008321.1 PFAM: protein of unknown function DUF925; KEGG: son:SO1672 hypothetical protein; hypothetical protein 3098742 4253173 Shewmr4_2602 Shewanella sp. MR-4 hypothetical protein YP_734730.1 3098155 R 60480 CDS YP_734731.1 113970938 4253174 complement(3099026..3099676) 1 NC_008321.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO1671 glutathione S-transferase family protein; maleylacetoacetate isomerase 3099676 4253174 Shewmr4_2603 Shewanella sp. MR-4 maleylacetoacetate isomerase YP_734731.1 3099026 R 60480 CDS YP_734732.1 113970939 4253175 complement(3099761..3100747) 1 NC_008321.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1670 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase 3100747 4253175 Shewmr4_2604 Shewanella sp. MR-4 fumarylacetoacetate (FAA) hydrolase YP_734732.1 3099761 R 60480 CDS YP_734733.1 113970940 4253176 complement(3101085..3102623) 1 NC_008321.1 PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: AAA ATPase; KEGG: son:SO1669 transcriptional regulatory protein TyrR; transcriptional regulator, TyrR 3102623 4253176 Shewmr4_2605 Shewanella sp. MR-4 transcriptional regulator, TyrR YP_734733.1 3101085 R 60480 CDS YP_734734.1 113970941 4253177 complement(3102899..3103237) 1 NC_008321.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 3103237 phhB 4253177 phhB Shewanella sp. MR-4 pterin-4-alpha-carbinolamine dehydratase YP_734734.1 3102899 R 60480 CDS YP_734735.1 113970942 4253178 complement(3103320..3104135) 1 NC_008321.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 3104135 phhA 4253178 phhA Shewanella sp. MR-4 phenylalanine 4-monooxygenase YP_734735.1 3103320 R 60480 CDS YP_734736.1 113970943 4253179 3104459..3105367 1 NC_008321.1 KEGG: son:SO1665 UTP--glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UDP-glucose pyrophosphorylase 3105367 4253179 Shewmr4_2608 Shewanella sp. MR-4 UDP-glucose pyrophosphorylase YP_734736.1 3104459 D 60480 CDS YP_734737.1 113970944 4253180 3105367..3106380 1 NC_008321.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO1664 UDP-glucose 4-epimerase; UDP-galactose 4-epimerase 3106380 4253180 Shewmr4_2609 Shewanella sp. MR-4 UDP-galactose 4-epimerase YP_734737.1 3105367 D 60480 CDS YP_734738.1 113970945 4253181 3106454..3106930 1 NC_008321.1 TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1663 ferredoxin-type protein NapF; ferredoxin-type protein NapF 3106930 4253181 Shewmr4_2610 Shewanella sp. MR-4 ferredoxin-type protein NapF YP_734738.1 3106454 D 60480 CDS YP_734739.1 113970946 4253182 3107033..3107479 1 NC_008321.1 PFAM: protein of unknown function DUF583; KEGG: son:SO1662 hypothetical Ccm2-related protein; hypothetical protein 3107479 4253182 Shewmr4_2611 Shewanella sp. MR-4 hypothetical protein YP_734739.1 3107033 D 60480 CDS YP_734740.1 113970947 4253183 3107715..3108767 1 NC_008321.1 PFAM: regulatory protein, LysR; KEGG: son:SO1661 transcriptional regulator, LysR family; LysR family transcriptional regulator 3108767 4253183 Shewmr4_2612 Shewanella sp. MR-4 LysR family transcriptional regulator YP_734740.1 3107715 D 60480 CDS YP_734741.1 113970948 4253184 3109205..3111493 1 NC_008321.1 KEGG: son:SO1659 decaheme cytochrome c; decaheme cytochrome c 3111493 4253184 Shewmr4_2613 Shewanella sp. MR-4 decaheme cytochrome c YP_734741.1 3109205 D 60480 CDS YP_734742.1 113970949 4253185 complement(3111587..3112282) 1 NC_008321.1 KEGG: son:SO1658 hypothetical protein; hypothetical protein 3112282 4253185 Shewmr4_2614 Shewanella sp. MR-4 hypothetical protein YP_734742.1 3111587 R 60480 CDS YP_734743.1 113970950 4253186 complement(3112287..3113021) 1 NC_008321.1 PFAM: protein of unknown function DUF218; KEGG: son:SO1657 hypothetical protein; hypothetical protein 3113021 4253186 Shewmr4_2615 Shewanella sp. MR-4 hypothetical protein YP_734743.1 3112287 R 60480 CDS YP_734744.1 113970951 4253187 complement(3113129..3114049) 1 NC_008321.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 3114049 4253187 Shewmr4_2616 Shewanella sp. MR-4 fructokinase YP_734744.1 3113129 R 60480 CDS YP_734745.1 113970952 4253188 complement(3114112..3114918) 1 NC_008321.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: son:SO1655 cysQ protein; 3'(2'),5'-bisphosphate nucleotidase 3114918 4253188 Shewmr4_2617 Shewanella sp. MR-4 3'(2'),5'-bisphosphate nucleotidase YP_734745.1 3114112 R 60480 CDS YP_734746.1 113970953 4253189 complement(3115265..3116344) 1 NC_008321.1 KEGG: son:SO1653 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 3116344 4253189 Shewmr4_2618 Shewanella sp. MR-4 dTDP-4-dehydrorhamnose reductase YP_734746.1 3115265 R 60480 CDS YP_734747.1 113970954 4253190 complement(3116382..3117140) 1 NC_008321.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: son:SO1652 putative histidinol phosphatase; putative hydrolase 3117140 4253190 Shewmr4_2619 Shewanella sp. MR-4 putative hydrolase YP_734747.1 3116382 R 60480 CDS YP_734748.1 113970955 4253191 complement(3117228..3120476) 1 NC_008321.1 PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD/DEAH box helicase domain protein; KEGG: son:SO1651 Snf2 family protein; SNF2-like protein 3120476 4253191 Shewmr4_2620 Shewanella sp. MR-4 SNF2-like protein YP_734748.1 3117228 R 60480 CDS YP_734749.1 113970956 4253192 complement(3120661..3122484) 1 NC_008321.1 PFAM: protein of unknown function DUF885; KEGG: cps:CPS_4234 hypothetical protein; hypothetical protein 3122484 4253192 Shewmr4_2621 Shewanella sp. MR-4 hypothetical protein YP_734749.1 3120661 R 60480 CDS YP_734750.1 113970957 4253193 3123011..3123220 1 NC_008321.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: son:SO1648 cold shock domain family protein; cold-shock DNA-binding protein family protein 3123220 4253193 Shewmr4_2622 Shewanella sp. MR-4 cold-shock DNA-binding protein family protein YP_734750.1 3123011 D 60480 CDS YP_734751.1 113970958 4253194 complement(3123608..3125554) 1 NC_008321.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: son:SO1647 glutathione-regulated potassium-efflux system protein KefB, putative; potassium efflux system protein 3125554 4253194 Shewmr4_2623 Shewanella sp. MR-4 potassium efflux system protein YP_734751.1 3123608 R 60480 CDS YP_734752.1 113970959 4253195 3125724..3126614 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1646 GGDEF family protein; diguanylate cyclase 3126614 4253195 Shewmr4_2624 Shewanella sp. MR-4 diguanylate cyclase YP_734752.1 3125724 D 60480 CDS YP_734753.1 113970960 4253196 complement(3126665..3128062) 1 NC_008321.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase-like; PFAM: PP-loop domain protein; KEGG: son:SO1645 cell cycle protein MesJ; tRNA(Ile)-lysidine synthetase 3128062 4253196 Shewmr4_2625 Shewanella sp. MR-4 tRNA(Ile)-lysidine synthetase YP_734753.1 3126665 R 60480 CDS YP_734754.1 113970961 4253197 complement(3128142..3131618) 1 NC_008321.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 3131618 dnaE 4253197 dnaE Shewanella sp. MR-4 DNA polymerase III subunit alpha YP_734754.1 3128142 R 60480 CDS YP_734755.1 113970962 4253198 complement(3131736..3132365) 1 NC_008321.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 3132365 rnhB 4253198 rnhB Shewanella sp. MR-4 ribonuclease HII YP_734755.1 3131736 R 60480 CDS YP_734756.1 113970963 4253199 complement(3132365..3133522) 1 NC_008321.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 3133522 lpxB 4253199 lpxB Shewanella sp. MR-4 lipid-A-disaccharide synthase YP_734756.1 3132365 R 60480 CDS YP_734757.1 113970964 4253200 complement(3133639..3134409) 1 NC_008321.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 3134409 4253200 Shewmr4_2629 Shewanella sp. MR-4 UDP-N-acetylglucosamine acyltransferase YP_734757.1 3133639 R 60480 CDS YP_734758.1 113970965 4253201 complement(3134406..3134870) 1 NC_008321.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 3134870 fabZ 4253201 fabZ Shewanella sp. MR-4 (3R)-hydroxymyristoyl-ACP dehydratase YP_734758.1 3134406 R 60480 CDS YP_734759.1 113970966 4253202 complement(3134903..3135928) 1 NC_008321.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 3135928 lpxD 4253202 lpxD Shewanella sp. MR-4 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_734759.1 3134903 R 60480 CDS YP_734760.1 113970967 4253203 complement(3135932..3136429) 1 NC_008321.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: son:SO1638 outer membrane protein OmpH; outer membrane chaperone Skp (OmpH) 3136429 4253203 Shewmr4_2632 Shewanella sp. MR-4 outer membrane chaperone Skp (OmpH) YP_734760.1 3135932 R 60480 CDS YP_734761.1 113970968 4253204 complement(3136495..3138975) 1 NC_008321.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO1637 bacterial surface antigen; surface antigen (D15) 3138975 4253204 Shewmr4_2633 Shewanella sp. MR-4 surface antigen (D15) YP_734761.1 3136495 R 60480 CDS YP_734762.1 113970969 4253205 complement(3139007..3140377) 1 NC_008321.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: son:SO1636 membrane-associated zinc metalloprotease, putative; peptidase RseP 3140377 4253205 Shewmr4_2634 Shewanella sp. MR-4 peptidase RseP YP_734762.1 3139007 R 60480 CDS YP_734763.1 113970970 4253206 complement(3140428..3141618) 1 NC_008321.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3141618 4253206 Shewmr4_2635 Shewanella sp. MR-4 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_734763.1 3140428 R 60480 CDS YP_734764.1 113970971 4253207 complement(3141623..3142480) 1 NC_008321.1 PFAM: phosphatidate cytidylyltransferase; KEGG: son:SO1634 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 3142480 4253207 Shewmr4_2636 Shewanella sp. MR-4 phosphatidate cytidylyltransferase YP_734764.1 3141623 R 60480 CDS YP_734765.1 113970972 4253208 complement(3142501..3143328) 1 NC_008321.1 KEGG: son:SO1633 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl pyrophosphate synthetase 3143328 4253208 Shewmr4_2637 Shewanella sp. MR-4 undecaprenyl pyrophosphate synthetase YP_734765.1 3142501 R 60480 CDS YP_734766.1 113970973 4253209 complement(3143411..3143968) 1 NC_008321.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 3143968 frr 4253209 frr Shewanella sp. MR-4 ribosome recycling factor YP_734766.1 3143411 R 60480 CDS YP_734767.1 113970974 4253210 complement(3143999..3144727) 1 NC_008321.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 3144727 pyrH 4253210 pyrH Shewanella sp. MR-4 uridylate kinase YP_734767.1 3143999 R 60480 CDS YP_734768.1 113970975 4253211 complement(3144797..3145648) 1 NC_008321.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 3145648 tsf 4253211 tsf Shewanella sp. MR-4 elongation factor Ts YP_734768.1 3144797 R 60480 CDS YP_734769.1 113970976 4253212 complement(3145768..3146496) 1 NC_008321.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 3146496 rpsB 4253212 rpsB Shewanella sp. MR-4 30S ribosomal protein S2 YP_734769.1 3145768 R 60480 CDS YP_734770.1 113970977 4253213 3146767..3147603 1 NC_008321.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 3147603 4253213 Shewmr4_2642 Shewanella sp. MR-4 methionine aminopeptidase YP_734770.1 3146767 D 60480 CDS YP_734771.1 113970978 4253214 3147672..3150257 1 NC_008321.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3150257 4253214 Shewmr4_2643 Shewanella sp. MR-4 PII uridylyl-transferase YP_734771.1 3147672 D 60480 CDS YP_734772.1 113970979 4253215 3150276..3151100 1 NC_008321.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 3151100 dapD 4253215 dapD Shewanella sp. MR-4 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_734772.1 3150276 D 60480 CDS YP_734773.1 113970980 4253216 3151322..3151675 1 NC_008321.1 KEGG: sdn:Sden_1550 hypothetical protein; hypothetical protein 3151675 4253216 Shewmr4_2645 Shewanella sp. MR-4 hypothetical protein YP_734773.1 3151322 D 60480 CDS YP_734774.1 113970981 4253217 complement(3151828..3153756) 1 NC_008321.1 PFAM: CBS domain containing protein; GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mag:amb0553 response regulator; metal dependent phosphohydrolase 3153756 4253217 Shewmr4_2646 Shewanella sp. MR-4 metal dependent phosphohydrolase YP_734774.1 3151828 R 60480 CDS YP_734775.1 113970982 4253218 complement(3153965..3154867) 1 NC_008321.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 3154867 purU 4253218 purU Shewanella sp. MR-4 formyltetrahydrofolate deformylase YP_734775.1 3153965 R 60480 CDS YP_734776.1 113970983 4253219 complement(3154997..3156478) 1 NC_008321.1 TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: son:SO1623 PTS system, glucose-specific IIBC component; PTS system, glucose-like IIB subunit 3156478 4253219 Shewmr4_2648 Shewanella sp. MR-4 PTS system, glucose-like IIB subunit YP_734776.1 3154997 R 60480 CDS YP_734777.1 113970984 4253220 complement(3156430..3156894) 1 NC_008321.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 3156894 4253220 Shewmr4_2649 Shewanella sp. MR-4 flavodoxin YP_734777.1 3156430 R 60480 CDS YP_734778.1 113970985 4253221 complement(3157324..3158178) 1 NC_008321.1 PFAM: pseudouridine synthase; KEGG: sdn:Sden_1546 pseudouridylate synthase; tRNA pseudouridine synthase C 3158178 4253221 Shewmr4_2650 Shewanella sp. MR-4 tRNA pseudouridine synthase C YP_734778.1 3157324 R 60480 CDS YP_734779.1 113970986 4253222 complement(3158165..3158500) 1 NC_008321.1 PFAM: protein of unknown function DUF446; KEGG: son:SO1619 hypothetical protein; hypothetical protein 3158500 4253222 Shewmr4_2651 Shewanella sp. MR-4 hypothetical protein YP_734779.1 3158165 R 60480 CDS YP_734780.1 113970987 4253223 3158632..3159645 1 NC_008321.1 KEGG: son:SO1618 hypothetical protein; hypothetical protein 3159645 4253223 Shewmr4_2652 Shewanella sp. MR-4 hypothetical protein YP_734780.1 3158632 D 60480 CDS YP_734781.1 113970988 4253224 3159642..3160028 1 NC_008321.1 KEGG: son:SO1617 hypothetical protein; hypothetical protein 3160028 4253224 Shewmr4_2653 Shewanella sp. MR-4 hypothetical protein YP_734781.1 3159642 D 60480 CDS YP_734782.1 113970989 4253225 complement(3161686..3161991) 1 NC_008321.1 KEGG: son:SO1615 hypothetical protein; hypothetical protein 3161991 4253225 Shewmr4_2654 Shewanella sp. MR-4 hypothetical protein YP_734782.1 3161686 R 60480 CDS YP_734783.1 113970990 4253226 complement(3161984..3162622) 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1614 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 3162622 4253226 Shewmr4_2655 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_734783.1 3161984 R 60480 CDS YP_734784.1 113970991 4253227 3162767..3163000 1 NC_008321.1 KEGG: son:SO1613 hypothetical protein; hypothetical protein 3163000 4253227 Shewmr4_2656 Shewanella sp. MR-4 hypothetical protein YP_734784.1 3162767 D 60480 CDS YP_734785.1 113970992 4253228 complement(3163049..3163447) 1 NC_008321.1 KEGG: son:SO1612 hypothetical protein; hypothetical protein 3163447 4253228 Shewmr4_2657 Shewanella sp. MR-4 hypothetical protein YP_734785.1 3163049 R 60480 CDS YP_734786.1 113970993 4253229 3163595..3163978 1 NC_008321.1 KEGG: son:SO1611 hypothetical protein; hypothetical protein 3163978 4253229 Shewmr4_2658 Shewanella sp. MR-4 hypothetical protein YP_734786.1 3163595 D 60480 CDS YP_734787.1 113970994 4253230 3163978..3164751 1 NC_008321.1 KEGG: son:SO1610 hypothetical protein; hypothetical protein 3164751 4253230 Shewmr4_2659 Shewanella sp. MR-4 hypothetical protein YP_734787.1 3163978 D 60480 CDS YP_734788.1 113970995 4253231 complement(3164854..3165504) 1 NC_008321.1 putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 3165504 4253231 Shewmr4_2660 Shewanella sp. MR-4 SecY interacting protein Syd YP_734788.1 3164854 R 60480 CDS YP_734789.1 113970996 4253232 3165564..3166424 1 NC_008321.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3166424 queF 4253232 queF Shewanella sp. MR-4 7-cyano-7-deazaguanine reductase YP_734789.1 3165564 D 60480 CDS YP_734790.1 113970997 4253233 complement(3166519..3167259) 1 NC_008321.1 PFAM: SpoOM family protein; KEGG: pha:PSHAa0857 SpoOM-related protein; SpoOM family protein 3167259 4253233 Shewmr4_2662 Shewanella sp. MR-4 SpoOM family protein YP_734790.1 3166519 R 60480 CDS YP_734791.1 113970998 4253234 complement(3167320..3167841) 1 NC_008321.1 KEGG: son:SO1605 lipoprotein, putative; putative lipoprotein 3167841 4253234 Shewmr4_2663 Shewanella sp. MR-4 putative lipoprotein YP_734791.1 3167320 R 60480 CDS YP_734792.1 113970999 4253235 complement(3168099..3169088) 1 NC_008321.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: son:SO1604 4'-phosphopantetheinyl transferase family protein; 4'-phosphopantetheinyl transferase 3169088 4253235 Shewmr4_2664 Shewanella sp. MR-4 4'-phosphopantetheinyl transferase YP_734792.1 3168099 R 60480 CDS YP_734793.1 113971000 4253236 3169469..3170338 1 NC_008321.1 KEGG: son:SO1603 transcriptional regulator, putative; transcriptional regulator 3170338 4253236 Shewmr4_2665 Shewanella sp. MR-4 transcriptional regulator YP_734793.1 3169469 D 60480 CDS YP_734794.1 113971001 4253237 3170335..3178308 1 NC_008321.1 PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: ppr:PBPRA1460 omega-3 polyunsaturated fatty acid synthase PfaA; beta-ketoacyl synthase 3178308 4253237 Shewmr4_2666 Shewanella sp. MR-4 beta-ketoacyl synthase YP_734794.1 3170335 D 60480 CDS YP_734795.1 113971002 4253238 3178413..3180719 1 NC_008321.1 KEGG: sdn:Sden_2628 omega-3 polyunsaturated fatty acid synthase PfaB; omega-3 polyunsaturated fatty acid synthase PfaB 3180719 4253238 Shewmr4_2667 Shewanella sp. MR-4 omega-3 polyunsaturated fatty acid synthase PfaB YP_734795.1 3178413 D 60480 CDS YP_734796.1 113971003 4253239 3180728..3186673 1 NC_008321.1 PFAM: beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: son:SO1599 multi-domain beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ 3186673 4253239 Shewmr4_2668 Shewanella sp. MR-4 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_734796.1 3180728 D 60480 CDS YP_734797.1 113971004 4253240 3186831..3188483 1 NC_008321.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: son:SO1597 hypothetical protein; 2-nitropropane dioxygenase, NPD 3188483 4253240 Shewmr4_2669 Shewanella sp. MR-4 2-nitropropane dioxygenase, NPD YP_734797.1 3186831 D 60480 CDS YP_734798.1 113971005 4253241 3188977..3189417 1 NC_008321.1 KEGG: rfr:Rfer_1414 hypothetical protein; hypothetical protein 3189417 4253241 Shewmr4_2670 Shewanella sp. MR-4 hypothetical protein YP_734798.1 3188977 D 60480 CDS YP_734799.1 113971006 4253242 3189974..3190201 1 NC_008321.1 PFAM: protein of unknown function DUF1328; KEGG: sdn:Sden_3712 protein of unknown function DUF1328; hypothetical protein 3190201 4253242 Shewmr4_2671 Shewanella sp. MR-4 hypothetical protein YP_734799.1 3189974 D 60480 CDS YP_734800.1 113971007 4253243 3190224..3190418 1 NC_008321.1 KEGG: sdn:Sden_3711 hypothetical protein; hypothetical protein 3190418 4253243 Shewmr4_2672 Shewanella sp. MR-4 hypothetical protein YP_734800.1 3190224 D 60480 CDS YP_734801.1 113971008 4253244 3190573..3192270 1 NC_008321.1 PFAM: Dual specificity protein phosphatase; diacylglycerol kinase, catalytic region; SMART: protein tyrosine phosphatase, catalytic region; KEGG: sdn:Sden_3710 diacylglycerol kinase, catalytic region; hypothetical protein 3192270 4253244 Shewmr4_2673 Shewanella sp. MR-4 hypothetical protein YP_734801.1 3190573 D 60480 CDS YP_734802.1 113971009 4253245 complement(3192357..3193766) 1 NC_008321.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: sdn:Sden_3709 sigma-54 factor, interaction region; sigma-54 dependent trancsriptional regulator 3193766 4253245 Shewmr4_2674 Shewanella sp. MR-4 sigma-54 dependent trancsriptional regulator YP_734802.1 3192357 R 60480 CDS YP_734803.1 113971010 4253246 3194020..3194496 1 NC_008321.1 KEGG: sdn:Sden_3708 hypothetical protein; hypothetical protein 3194496 4253246 Shewmr4_2675 Shewanella sp. MR-4 hypothetical protein YP_734803.1 3194020 D 60480 CDS YP_734804.1 113971011 4253247 3194769..3195317 1 NC_008321.1 PFAM: transport-associated; KEGG: sdn:Sden_3707 transport-associated; transport-associated 3195317 4253247 Shewmr4_2676 Shewanella sp. MR-4 transport-associated YP_734804.1 3194769 D 60480 CDS YP_734805.1 113971012 4253248 complement(3195451..3195867) 1 NC_008321.1 KEGG: son:SO1590 hypothetical protein; hypothetical protein 3195867 4253248 Shewmr4_2677 Shewanella sp. MR-4 hypothetical protein YP_734805.1 3195451 R 60480 CDS YP_734806.1 113971013 4253249 complement(3195992..3196840) 1 NC_008321.1 KEGG: son:SO1589 hypothetical protein; hypothetical protein 3196840 4253249 Shewmr4_2678 Shewanella sp. MR-4 hypothetical protein YP_734806.1 3195992 R 60480 CDS YP_734807.1 113971014 4253250 complement(3196969..3197559) 1 NC_008321.1 PFAM: Phosphoglycerate mutase; KEGG: vvy:VVA1671 fructose-2;6-bisphosphatase; phosphoglycerate mutase 3197559 4253250 Shewmr4_2679 Shewanella sp. MR-4 phosphoglycerate mutase YP_734807.1 3196969 R 60480 CDS YP_734808.1 113971015 4253251 complement(3197629..3198129) 1 NC_008321.1 hypothetical protein 3198129 4253251 Shewmr4_2680 Shewanella sp. MR-4 hypothetical protein YP_734808.1 3197629 R 60480 CDS YP_734809.1 113971016 4253252 complement(3198316..3199359) 1 NC_008321.1 PFAM: porin, Gram-negative type; KEGG: son:SO3896 outer membrane porin, putative; porin 3199359 4253252 Shewmr4_2681 Shewanella sp. MR-4 porin YP_734809.1 3198316 R 60480 CDS YP_734810.1 113971017 4253253 complement(3199450..3200793) 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: vpa:VPA0824 putative regulatory protein UhpC; major facilitator transporter 3200793 4253253 Shewmr4_2682 Shewanella sp. MR-4 major facilitator transporter YP_734810.1 3199450 R 60480 CDS YP_734811.1 113971018 4253254 3201113..3202426 1 NC_008321.1 KEGG: vpa:VPA0825 putative phosphoglycerate transport regulatory protein PgtC; putative phosphoglycerate transport regulatory protein PgtC 3202426 4253254 Shewmr4_2683 Shewanella sp. MR-4 putative phosphoglycerate transport regulatory protein PgtC YP_734811.1 3201113 D 60480 CDS YP_734812.1 113971019 4253255 3202429..3204801 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ppr:PBPRA2770 hypothetical phosphoglycerate transport regulatory protein PgtB; periplasmic sensor signal transduction histidine kinase 3204801 4253255 Shewmr4_2684 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_734812.1 3202429 D 60480 CDS YP_734813.1 113971020 4253256 3204791..3206068 1 NC_008321.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; KEGG: ppr:PBPRA2771 phosphoglycerate transport system transcription regulator; two component, sigma54 specific, Fis family transcriptional regulator 3206068 4253256 Shewmr4_2685 Shewanella sp. MR-4 two component, sigma54 specific, Fis family transcriptional regulator YP_734813.1 3204791 D 60480 CDS YP_734814.1 113971021 4253257 3206235..3206477 1 NC_008321.1 KEGG: son:SO1588 hypothetical protein; hypothetical protein 3206477 4253257 Shewmr4_2686 Shewanella sp. MR-4 hypothetical protein YP_734814.1 3206235 D 60480 CDS YP_734815.1 113971022 4253258 complement(3206486..3206992) 1 NC_008321.1 KEGG: son:SO1587 hypothetical protein; hypothetical protein 3206992 4253258 Shewmr4_2687 Shewanella sp. MR-4 hypothetical protein YP_734815.1 3206486 R 60480 CDS YP_734816.1 113971023 4253259 complement(3207126..3207734) 1 NC_008321.1 PFAM: cyclic nucleotide-binding; KEGG: son:SO1586 hypothetical cyclic nucleotide-binding domain protein; cyclic nucleotide-binding protein 3207734 4253259 Shewmr4_2688 Shewanella sp. MR-4 cyclic nucleotide-binding protein YP_734816.1 3207126 R 60480 CDS YP_734817.1 113971024 4253260 complement(3207739..3208365) 1 NC_008321.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1585 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase 3208365 4253260 Shewmr4_2689 Shewanella sp. MR-4 fumarylacetoacetate (FAA) hydrolase YP_734817.1 3207739 R 60480 CDS YP_734818.1 113971025 4253261 complement(3208414..3209427) 1 NC_008321.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO1583 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 3209427 4253261 Shewmr4_2690 Shewanella sp. MR-4 succinylglutamate desuccinylase/aspartoacylase YP_734818.1 3208414 R 60480 CDS YP_734819.1 113971026 4253262 complement(3209497..3210033) 1 NC_008321.1 PFAM: regulatory protein, MarR; KEGG: son:SO1582 transcriptional regulator, MarR family; MarR family transcriptional regulator 3210033 4253262 Shewmr4_2691 Shewanella sp. MR-4 MarR family transcriptional regulator YP_734819.1 3209497 R 60480 CDS YP_734820.1 113971027 4253263 complement(3210210..3210773) 1 NC_008321.1 PFAM: PhnA protein; KEGG: son:SO1581 PhnA protein; PhnA protein 3210773 4253263 Shewmr4_2692 Shewanella sp. MR-4 PhnA protein YP_734820.1 3210210 R 60480 CDS YP_734821.1 113971028 4253264 3211116..3211829 1 NC_008321.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO1579 hypothetical protein; hypothetical protein 3211829 4253264 Shewmr4_2693 Shewanella sp. MR-4 hypothetical protein YP_734821.1 3211116 D 60480 CDS YP_734822.1 113971029 4253265 complement(3211892..3212503) 1 NC_008321.1 PFAM: regulatory protein, TetR; KEGG: son:SO1578 transcriptional regulator, TetR family; TetR family transcriptional regulator 3212503 4253265 Shewmr4_2694 Shewanella sp. MR-4 TetR family transcriptional regulator YP_734822.1 3211892 R 60480 CDS YP_734823.1 113971030 4253266 3212659..3213285 1 NC_008321.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO1577 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 3213285 4253266 Shewmr4_2695 Shewanella sp. MR-4 glutathione S-transferase domain-containing protein YP_734823.1 3212659 D 60480 CDS YP_734824.1 113971031 4253267 3213347..3214015 1 NC_008321.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO1576 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 3214015 4253267 Shewmr4_2696 Shewanella sp. MR-4 glutathione S-transferase domain-containing protein YP_734824.1 3213347 D 60480 CDS YP_734825.1 113971032 4253268 3214192..3215565 1 NC_008321.1 PFAM: Fmu (Sun) domain protein; KEGG: son:SO1575 NOL1/NOP2/sun family putative RNA methylase; Fmu (Sun) domain-containing protein 3215565 4253268 Shewmr4_2697 Shewanella sp. MR-4 Fmu (Sun) domain-containing protein YP_734825.1 3214192 D 60480 CDS YP_734826.1 113971033 4253269 3216129..3216293 1 NC_008321.1 KEGG: son:SO1572 hypothetical protein; hypothetical protein 3216293 4253269 Shewmr4_2698 Shewanella sp. MR-4 hypothetical protein YP_734826.1 3216129 D 60480 CDS YP_734827.1 113971034 4253270 3216533..3219658 1 NC_008321.1 KEGG: son:SO1571 hypothetical protein; hypothetical protein 3219658 4253270 Shewmr4_2699 Shewanella sp. MR-4 hypothetical protein YP_734827.1 3216533 D 60480 CDS YP_734828.1 113971035 4253271 complement(3219763..3221430) 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: son:SO1570 GGDEF domain protein; diguanylate cyclase 3221430 4253271 Shewmr4_2700 Shewanella sp. MR-4 diguanylate cyclase YP_734828.1 3219763 R 60480 CDS YP_734829.1 113971036 4253272 3221628..3222479 1 NC_008321.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1569 integral membrane domain protein; hypothetical protein 3222479 4253272 Shewmr4_2701 Shewanella sp. MR-4 hypothetical protein YP_734829.1 3221628 D 60480 CDS YP_734830.1 113971037 4253273 complement(3222539..3223078) 1 NC_008321.1 PFAM: YfaZ family protein; KEGG: son:SO1568 hypothetical protein; YfaZ family protein 3223078 4253273 Shewmr4_2702 Shewanella sp. MR-4 YfaZ family protein YP_734830.1 3222539 R 60480 CDS YP_734831.1 113971038 4253274 complement(3223242..3223751) 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1566 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 3223751 4253274 Shewmr4_2703 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_734831.1 3223242 R 60480 CDS YP_734832.1 113971039 4253275 complement(3223780..3225150) 1 NC_008321.1 PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO1565 magnesium transporter, putative; MgtE intracellular region 3225150 4253275 Shewmr4_2704 Shewanella sp. MR-4 MgtE intracellular region YP_734832.1 3223780 R 60480 CDS YP_734833.1 113971040 4253276 3225298..3225783 1 NC_008321.1 PFAM: glutathione peroxidase; KEGG: son:SO1563 glutathione peroxidase; glutathione peroxidase 3225783 4253276 Shewmr4_2705 Shewanella sp. MR-4 glutathione peroxidase YP_734833.1 3225298 D 60480 CDS YP_734834.1 113971041 4253277 complement(3226383..3228200) 1 NC_008321.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1561 peptidase, M1 family; peptidase M1, membrane alanine aminopeptidase 3228200 4253277 Shewmr4_2706 Shewanella sp. MR-4 peptidase M1, membrane alanine aminopeptidase YP_734834.1 3226383 R 60480 CDS YP_734835.1 113971042 4253278 complement(3228669..3229640) 1 NC_008321.1 TIGRFAM: phosphate binding protein; KEGG: son:SO1560 phosphate-binding protein; phosphate binding protein 3229640 4253278 Shewmr4_2707 Shewanella sp. MR-4 phosphate binding protein YP_734835.1 3228669 R 60480 CDS YP_734836.1 113971043 4253279 complement(3229867..3231165) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: son:SO1559 phosphate regulon sensor protein PhoR; PAS/PAC sensor signal transduction histidine kinase 3231165 4253279 Shewmr4_2708 Shewanella sp. MR-4 PAS/PAC sensor signal transduction histidine kinase YP_734836.1 3229867 R 60480 CDS YP_734837.1 113971044 4253280 complement(3231246..3231935) 1 NC_008321.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1558 phosphate regulon response regulator PhoB; two component transcriptional regulator 3231935 4253280 Shewmr4_2709 Shewanella sp. MR-4 two component transcriptional regulator YP_734837.1 3231246 R 60480 CDS YP_734838.1 113971045 4253281 complement(3232121..3233065) 1 NC_008321.1 PFAM: porin, Gram-negative type; KEGG: son:SO1557 outer membrane porin, putative; porin 3233065 4253281 Shewmr4_2710 Shewanella sp. MR-4 porin YP_734838.1 3232121 R 60480 CDS YP_734839.1 113971046 4253282 3233358..3234272 1 NC_008321.1 Required for efficient pilin antigenic variation; recombination associated protein 3234272 rdgC 4253282 rdgC Shewanella sp. MR-4 recombination associated protein YP_734839.1 3233358 D 60480 CDS YP_734840.1 113971047 4253283 complement(3234500..3236311) 1 NC_008321.1 PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: sdn:Sden_2554 peptidase M61; peptidase M61 domain-containing protein 3236311 4253283 Shewmr4_2712 Shewanella sp. MR-4 peptidase M61 domain-containing protein YP_734840.1 3234500 R 60480 CDS YP_734841.1 113971048 4253284 3236452..3238614 1 NC_008321.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO1552 TPR domain protein; TPR repeat-containing protein 3238614 4253284 Shewmr4_2713 Shewanella sp. MR-4 TPR repeat-containing protein YP_734841.1 3236452 D 60480 CDS YP_734842.1 113971049 4253285 3238765..3240321 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1551 GGDEF domain protein; diguanylate cyclase 3240321 4253285 Shewmr4_2714 Shewanella sp. MR-4 diguanylate cyclase YP_734842.1 3238765 D 60480 CDS YP_734843.1 113971050 4253286 3240378..3241733 1 NC_008321.1 PFAM: conserved hypothetical protein 730; KEGG: son:SO1550 hypothetical protein; hypothetical protein 3241733 4253286 Shewmr4_2715 Shewanella sp. MR-4 hypothetical protein YP_734843.1 3240378 D 60480 CDS YP_734844.1 113971051 4253287 3241748..3242530 1 NC_008321.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3242530 xni 4253287 xni Shewanella sp. MR-4 exonuclease IX YP_734844.1 3241748 D 60480 CDS YP_734845.1 113971052 4253288 3242641..3243069 1 NC_008321.1 KEGG: son:SO1548 hypothetical protein; hypothetical protein 3243069 4253288 Shewmr4_2717 Shewanella sp. MR-4 hypothetical protein YP_734845.1 3242641 D 60480 CDS YP_734846.1 113971053 4253289 3244417..3245454 1 NC_008321.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ece:Z1444 putative serine/threonine kinase encoded by bacteriophage BP-933W; serine/threonine protein kinase 3245454 4253289 Shewmr4_2718 Shewanella sp. MR-4 serine/threonine protein kinase YP_734846.1 3244417 D 60480 CDS YP_734847.1 113971054 4253290 complement(3246152..3248968) 1 NC_008321.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1539 hypothetical protein; peptidase S9 prolyl oligopeptidase 3248968 4253290 Shewmr4_2719 Shewanella sp. MR-4 peptidase S9 prolyl oligopeptidase YP_734847.1 3246152 R 60480 CDS YP_734848.1 113971055 4253291 3249223..3250233 1 NC_008321.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 3250233 4253291 Shewmr4_2720 Shewanella sp. MR-4 isocitrate dehydrogenase YP_734848.1 3249223 D 60480 CDS YP_734849.1 113971056 4253292 complement(3250368..3251453) 1 NC_008321.1 KEGG: son:SO1536 hypothetical protein; putative RNA 2'-O-ribose methyltransferase 3251453 4253292 Shewmr4_2721 Shewanella sp. MR-4 putative RNA 2'-O-ribose methyltransferase YP_734849.1 3250368 R 60480 CDS YP_734850.1 113971057 4253293 complement(3251607..3251999) 1 NC_008321.1 PFAM: protein of unknown function DUF423; KEGG: son:SO1535 hypothetical protein; hypothetical protein 3251999 4253293 Shewmr4_2722 Shewanella sp. MR-4 hypothetical protein YP_734850.1 3251607 R 60480 CDS YP_734851.1 113971058 4253294 complement(3252087..3252758) 1 NC_008321.1 KEGG: son:SO1534 hypothetical protein; hypothetical protein 3252758 4253294 Shewmr4_2723 Shewanella sp. MR-4 hypothetical protein YP_734851.1 3252087 R 60480 CDS YP_734852.1 113971059 4253295 complement(3252739..3253650) 1 NC_008321.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3253650 4253295 Shewmr4_2724 Shewanella sp. MR-4 DNA-binding transcriptional activator GcvA YP_734852.1 3252739 R 60480 CDS YP_734853.1 113971060 4253296 3253827..3254060 1 NC_008321.1 KEGG: son:SO1532 hypothetical protein; hypothetical protein 3254060 4253296 Shewmr4_2725 Shewanella sp. MR-4 hypothetical protein YP_734853.1 3253827 D 60480 CDS YP_734854.1 113971061 4253297 complement(3254212..3255666) 1 NC_008321.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 3255666 4253297 Shewmr4_2726 Shewanella sp. MR-4 thiamine biosynthesis protein ThiI YP_734854.1 3254212 R 60480 CDS YP_734855.1 113971062 4253298 complement(3255883..3256803) 1 NC_008321.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB 3256803 motB 4253298 motB Shewanella sp. MR-4 flagellar motor protein MotB YP_734855.1 3255883 R 60480 CDS YP_734856.1 113971063 4253299 complement(3256807..3257574) 1 NC_008321.1 Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA 3257574 4253299 Shewmr4_2728 Shewanella sp. MR-4 flagellar motor protein PomA YP_734856.1 3256807 R 60480 CDS YP_734857.1 113971064 4253300 3257890..3258129 1 NC_008321.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: sdn:Sden_2569 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 3258129 4253300 Shewmr4_2729 Shewanella sp. MR-4 exodeoxyribonuclease VII small subunit YP_734857.1 3257890 D 60480 CDS YP_734858.1 113971065 4253301 3258132..3259013 1 NC_008321.1 PFAM: Polyprenyl synthetase; KEGG: son:SO1526 geranyltranstransferase; farnesyl-diphosphate synthase 3259013 4253301 Shewmr4_2730 Shewanella sp. MR-4 farnesyl-diphosphate synthase YP_734858.1 3258132 D 60480 CDS YP_734859.1 113971066 4253302 3259035..3260903 1 NC_008321.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3260903 4253302 Shewmr4_2731 Shewanella sp. MR-4 1-deoxy-D-xylulose-5-phosphate synthase YP_734859.1 3259035 D 60480 CDS YP_734860.1 113971067 4253303 complement(3261047..3261658) 1 NC_008321.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 3261658 4253303 Shewmr4_2732 Shewanella sp. MR-4 heat shock protein GrpE YP_734860.1 3261047 R 60480 CDS YP_734861.1 113971068 4253304 3261707..3262636 1 NC_008321.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3262636 ppnK 4253304 ppnK Shewanella sp. MR-4 inorganic polyphosphate/ATP-NAD kinase YP_734861.1 3261707 D 60480 CDS YP_734862.1 113971069 4253305 3263388..3265034 1 NC_008321.1 PFAM: L-lactate permease; KEGG: son:SO1522 L-lactate permease, putative; L-lactate permease 3265034 4253305 Shewmr4_2734 Shewanella sp. MR-4 L-lactate permease YP_734862.1 3263388 D 60480 CDS YP_734863.1 113971070 4253306 3265098..3267902 1 NC_008321.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: son:SO1521 iron-sulfur cluster-binding protein; FAD linked oxidase domain-containing protein 3267902 4253306 Shewmr4_2735 Shewanella sp. MR-4 FAD linked oxidase domain-containing protein YP_734863.1 3265098 D 60480 CDS YP_734864.1 113971071 4253307 3268204..3268947 1 NC_008321.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: son:SO1520 hypothetical protein; hypothetical protein 3268947 4253307 Shewmr4_2736 Shewanella sp. MR-4 hypothetical protein YP_734864.1 3268204 D 60480 CDS YP_734865.1 113971072 4253308 3268958..3270352 1 NC_008321.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1519 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3270352 4253308 Shewmr4_2737 Shewanella sp. MR-4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_734865.1 3268958 D 60480 CDS YP_734866.1 113971073 4253309 3270354..3270923 1 NC_008321.1 PFAM: protein of unknown function DUF162; KEGG: son:SO1518 hypothetical protein; hypothetical protein 3270923 4253309 Shewmr4_2738 Shewanella sp. MR-4 hypothetical protein YP_734866.1 3270354 D 60480 CDS YP_734867.1 113971074 4253310 complement(3271195..3271548) 1 NC_008321.1 PFAM: protein of unknown function DUF1428; KEGG: sdn:Sden_1972 protein of unknown function DUF1428; hypothetical protein 3271548 4253310 Shewmr4_2739 Shewanella sp. MR-4 hypothetical protein YP_734867.1 3271195 R 60480 CDS YP_734868.1 113971075 4253311 complement(3271695..3272162) 1 NC_008321.1 hypothetical protein 3272162 4253311 Shewmr4_2740 Shewanella sp. MR-4 hypothetical protein YP_734868.1 3271695 R 60480 CDS YP_734869.1 113971076 4253312 3273063..3274172 1 NC_008321.1 PFAM: protein of unknown function UPF0118; KEGG: mca:MCA0120 hypothetical protein; hypothetical protein 3274172 4253312 Shewmr4_2741 Shewanella sp. MR-4 hypothetical protein YP_734869.1 3273063 D 60480 CDS YP_734870.1 113971077 4253313 3274162..3275715 1 NC_008321.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: reu:Reut_A1740 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 3275715 4253313 Shewmr4_2742 Shewanella sp. MR-4 RND efflux system outer membrane lipoprotein YP_734870.1 3274162 D 60480 CDS YP_734871.1 113971078 4253314 3275708..3276802 1 NC_008321.1 PFAM: secretion protein HlyD family protein; KEGG: rme:Rmet_1711 secretion protein HlyD; secretion protein HlyD family protein 3276802 4253314 Shewmr4_2743 Shewanella sp. MR-4 secretion protein HlyD family protein YP_734871.1 3275708 D 60480 CDS YP_734872.1 113971079 4253315 3276811..3277836 1 NC_008321.1 KEGG: pfo:Pfl_2137 hypothetical protein; hypothetical protein 3277836 4253315 Shewmr4_2744 Shewanella sp. MR-4 hypothetical protein YP_734872.1 3276811 D 60480 CDS YP_734873.1 113971080 4253316 3277838..3278254 1 NC_008321.1 PFAM: Ion transport 2 domain protein; KEGG: rme:Rmet_1713 ion transport 2; Ion transport 2 domain-containing protein 3278254 4253316 Shewmr4_2745 Shewanella sp. MR-4 Ion transport 2 domain-containing protein YP_734873.1 3277838 D 60480 CDS YP_734874.1 113971081 4253317 complement(3278480..3279991) 1 NC_008321.1 KEGG: son:SO1507 hypothetical protein; hypothetical protein 3279991 4253317 Shewmr4_2746 Shewanella sp. MR-4 hypothetical protein YP_734874.1 3278480 R 60480 CDS YP_734875.1 113971082 4253318 complement(3280220..3281572) 1 NC_008321.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO1506 MATE efflux family protein; multi anti extrusion protein MatE 3281572 4253318 Shewmr4_2747 Shewanella sp. MR-4 multi anti extrusion protein MatE YP_734875.1 3280220 R 60480 CDS YP_734876.1 113971083 4253319 3281991..3283535 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1505 transporter, putative; major facilitator transporter 3283535 4253319 Shewmr4_2748 Shewanella sp. MR-4 major facilitator transporter YP_734876.1 3281991 D 60480 CDS YP_734877.1 113971084 4253320 complement(3283679..3284200) 1 NC_008321.1 KEGG: son:SO1504 hypothetical protein; hypothetical protein 3284200 4253320 Shewmr4_2749 Shewanella sp. MR-4 hypothetical protein YP_734877.1 3283679 R 60480 CDS YP_734878.1 113971085 4253321 3284538..3285314 1 NC_008321.1 KEGG: son:SO1503 ABC transporter, periplasmic substrate-binding protein, putative; ABC transporter periplasmic substrate-binding protein 3285314 4253321 Shewmr4_2750 Shewanella sp. MR-4 ABC transporter periplasmic substrate-binding protein YP_734878.1 3284538 D 60480 CDS YP_734879.1 113971086 4253322 complement(3285393..3286511) 1 NC_008321.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: son:SO1502 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein, P47K 3286511 4253322 Shewmr4_2751 Shewanella sp. MR-4 cobalamin synthesis protein, P47K YP_734879.1 3285393 R 60480 CDS YP_734880.1 113971087 4253323 complement(3286620..3288005) 1 NC_008321.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1501 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase domain-containing protein 3288005 4253323 Shewmr4_2752 Shewanella sp. MR-4 DEAD/DEAH box helicase domain-containing protein YP_734880.1 3286620 R 60480 CDS YP_734881.1 113971088 4253324 complement(3288201..3291230) 1 NC_008321.1 KEGG: son:SO1500 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type, transmembrane region; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 3291230 4253324 Shewmr4_2753 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_734881.1 3288201 R 60480 CDS YP_734882.1 113971089 4253325 complement(3291341..3292930) 1 NC_008321.1 PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: son:SO1499 glycogen synthase; starch synthase 3292930 4253325 Shewmr4_2754 Shewanella sp. MR-4 starch synthase YP_734882.1 3291341 R 60480 CDS YP_734883.1 113971090 4253326 complement(3292998..3294260) 1 NC_008321.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 3294260 glgC 4253326 glgC Shewanella sp. MR-4 glucose-1-phosphate adenylyltransferase YP_734883.1 3292998 R 60480 CDS YP_734884.1 113971091 4253327 complement(3294379..3296892) 1 NC_008321.1 KEGG: son:SO1496 glycogen phosphorylase family protein; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylases 3296892 4253327 Shewmr4_2756 Shewanella sp. MR-4 glycogen/starch/alpha-glucan phosphorylases YP_734884.1 3294379 R 60480 CDS YP_734885.1 113971092 4253328 complement(3296895..3299153) 1 NC_008321.1 KEGG: son:SO1495 glycogen operon protein; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching enzyme GlgX 3299153 4253328 Shewmr4_2757 Shewanella sp. MR-4 glycogen debranching enzyme GlgX YP_734885.1 3296895 R 60480 CDS YP_734886.1 113971093 4253329 complement(3299150..3301387) 1 NC_008321.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 3301387 4253329 Shewmr4_2758 Shewanella sp. MR-4 glycogen branching enzyme YP_734886.1 3299150 R 60480 CDS YP_734887.1 113971094 4253330 complement(3301405..3303795) 1 NC_008321.1 KEGG: son:SO1493 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; 4-alpha-glucanotransferase 3303795 4253330 Shewmr4_2759 Shewanella sp. MR-4 4-alpha-glucanotransferase YP_734887.1 3301405 R 60480 CDS YP_734888.1 113971095 4253331 3304309..3304944 1 NC_008321.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO1492 peptidyl-prolyl cis-trans isomerase, cyclophilin family; peptidyl-prolyl cis-trans isomerase, cyclophilin type 3304944 4253331 Shewmr4_2760 Shewanella sp. MR-4 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_734888.1 3304309 D 60480 CDS YP_734889.1 113971096 4253332 complement(3305017..3305514) 1 NC_008321.1 PFAM: regulatory protein, MarR; KEGG: sdn:Sden_0718 regulatory protein, MarR; MarR family transcriptional regulator 3305514 4253332 Shewmr4_2761 Shewanella sp. MR-4 MarR family transcriptional regulator YP_734889.1 3305017 R 60480 CDS YP_734890.1 113971097 4253333 3305821..3306969 1 NC_008321.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO1490 alcohol dehydrogenase II; iron-containing alcohol dehydrogenase 3306969 4253333 Shewmr4_2762 Shewanella sp. MR-4 iron-containing alcohol dehydrogenase YP_734890.1 3305821 D 60480 CDS YP_734891.1 113971098 4253334 3307661..3308035 1 NC_008321.1 KEGG: son:SO1489 hypothetical protein; hypothetical protein 3308035 4253334 Shewmr4_2763 Shewanella sp. MR-4 hypothetical protein YP_734891.1 3307661 D 60480 CDS YP_734892.1 113971099 4253335 3308351..3308563 1 NC_008321.1 KEGG: son:SO1487 hypothetical protein; hypothetical protein 3308563 4253335 Shewmr4_2764 Shewanella sp. MR-4 hypothetical protein YP_734892.1 3308351 D 60480 CDS YP_734893.1 113971100 4253336 complement(3308601..3308969) 1 NC_008321.1 PFAM: thioesterase superfamily protein; KEGG: son:SO1486 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 3308969 4253336 Shewmr4_2765 Shewanella sp. MR-4 thioesterase superfamily protein YP_734893.1 3308601 R 60480 CDS YP_734894.1 113971101 4253337 complement(3309344..3310666) 1 NC_008321.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: son:SO1484 isocitrate lyase; isocitrate lyase 3310666 4253337 Shewmr4_2766 Shewanella sp. MR-4 isocitrate lyase YP_734894.1 3309344 R 60480 CDS YP_734895.1 113971102 4253338 complement(3310810..3312459) 1 NC_008321.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 3312459 4253338 Shewmr4_2767 Shewanella sp. MR-4 malate synthase YP_734895.1 3310810 R 60480 CDS YP_734896.1 113971103 4253339 3313295..3315766 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1482 TonB-dependent receptor, putative; TonB-dependent receptor 3315766 4253339 Shewmr4_2768 Shewanella sp. MR-4 TonB-dependent receptor YP_734896.1 3313295 D 60480 CDS YP_734897.1 113971104 4253340 complement(3315835..3317604) 1 NC_008321.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: son:SO1481 glutathione-regulated potassium-efflux system protein; potassium efflux system protein 3317604 4253340 Shewmr4_2769 Shewanella sp. MR-4 potassium efflux system protein YP_734897.1 3315835 R 60480 CDS YP_734898.1 113971105 4253341 complement(3317828..3319555) 1 NC_008321.1 KEGG: son:SO1480 GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 3319555 4253341 Shewmr4_2770 Shewanella sp. MR-4 diguanylate cyclase YP_734898.1 3317828 R 60480 CDS YP_734899.1 113971106 4253342 complement(3319619..3319831) 1 NC_008321.1 KEGG: son:SO1479 hypothetical protein; hypothetical protein 3319831 4253342 Shewmr4_2771 Shewanella sp. MR-4 hypothetical protein YP_734899.1 3319619 R 60480 CDS YP_734900.1 113971107 4253343 complement(3319876..3320667) 1 NC_008321.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO1478 methylase, putative; uroporphyrin-III C/tetrapyrrole methyltransferase 3320667 4253343 Shewmr4_2772 Shewanella sp. MR-4 uroporphyrin-III C/tetrapyrrole methyltransferase YP_734900.1 3319876 R 60480 CDS YP_734901.1 113971108 4253344 3321041..3321565 1 NC_008321.1 PFAM: SmpA/OmlA domain protein; KEGG: son:SO1476 small protein A; SmpA/OmlA domain-containing protein 3321565 4253344 Shewmr4_2773 Shewanella sp. MR-4 SmpA/OmlA domain-containing protein YP_734901.1 3321041 D 60480 CDS YP_734902.1 113971109 4253345 complement(3321642..3321977) 1 NC_008321.1 PFAM: protein of unknown function UPF0125; KEGG: son:SO1475 hypothetical protein; hypothetical protein 3321977 4253345 Shewmr4_2774 Shewanella sp. MR-4 hypothetical protein YP_734902.1 3321642 R 60480 CDS YP_734903.1 113971110 4253346 complement(3321967..3322404) 1 NC_008321.1 PFAM: cyclase/dehydrase; KEGG: son:SO1474 hypothetical protein; cyclase/dehydrase 3322404 4253346 Shewmr4_2775 Shewanella sp. MR-4 cyclase/dehydrase YP_734903.1 3321967 R 60480 CDS YP_734904.1 113971111 4253347 3322658..3323149 1 NC_008321.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 3323149 smpB 4253347 smpB Shewanella sp. MR-4 SsrA-binding protein YP_734904.1 3322658 D 60480 CDS YP_734905.1 113971112 4253348 3323742..3324986 1 NC_008321.1 PFAM: phage integrase family protein; KEGG: vch:VC0847 integrase, phage family; phage integrase family protein 3324986 4253348 Shewmr4_2777 Shewanella sp. MR-4 phage integrase family protein YP_734905.1 3323742 D 60480 CDS YP_734906.1 113971113 4253349 complement(3325040..3327697) 1 NC_008321.1 PFAM: type III restriction enzyme, res subunit; KEGG: tbd:Tbd_2275 hypothetical protein; type III restriction enzyme, res subunit 3327697 4253349 Shewmr4_2778 Shewanella sp. MR-4 type III restriction enzyme, res subunit YP_734906.1 3325040 R 60480 CDS YP_734907.1 113971114 4253350 complement(3327699..3329567) 1 NC_008321.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: tbd:Tbd_2276 adenine specific DNA methylase; DNA methylase N-4/N-6 domain-containing protein 3329567 4253350 Shewmr4_2779 Shewanella sp. MR-4 DNA methylase N-4/N-6 domain-containing protein YP_734907.1 3327699 R 60480 CDS YP_734908.1 113971115 4253351 complement(3329622..3329795) 1 NC_008321.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: vfi:VFA0534 hypothetical protein; phage transcriptional regulator, AlpA 3329795 4253351 Shewmr4_2780 Shewanella sp. MR-4 phage transcriptional regulator, AlpA YP_734908.1 3329622 R 60480 CDS YP_734909.1 113971116 4253352 complement(3329900..3330472) 1 NC_008321.1 PFAM: Resolvase, N-terminal domain protein; KEGG: ppr:PBPRA0888 hypothetical resolvase; resolvase domain-containing protein 3330472 4253352 Shewmr4_2781 Shewanella sp. MR-4 resolvase domain-containing protein YP_734909.1 3329900 R 60480 CDS YP_734910.1 113971117 4253353 complement(3330635..3331738) 1 NC_008321.1 PFAM: phage integrase family protein; KEGG: ctc:CTC01567 DNA integration/recombination protein; phage integrase family protein 3331738 4253353 Shewmr4_2782 Shewanella sp. MR-4 phage integrase family protein YP_734910.1 3330635 R 60480 CDS YP_734911.1 113971118 4253354 complement(3331722..3332213) 1 NC_008321.1 KEGG: rde:RD1_2231 hypothetical protein; hypothetical protein 3332213 4253354 Shewmr4_2783 Shewanella sp. MR-4 hypothetical protein YP_734911.1 3331722 R 60480 CDS YP_734912.1 113971119 4253355 complement(3332206..3332406) 1 NC_008321.1 PFAM: Prophage CP4-57 regulatory; KEGG: vvy:VV0262 prophage regulatory protein; phage transcriptional regulator, AlpA 3332406 4253355 Shewmr4_2784 Shewanella sp. MR-4 phage transcriptional regulator, AlpA YP_734912.1 3332206 R 60480 CDS YP_734913.1 113971120 4253356 complement(3332510..3333409) 1 NC_008321.1 KEGG: eca:ECA2751 putative phage-related protein; hypothetical protein 3333409 4253356 Shewmr4_2785 Shewanella sp. MR-4 hypothetical protein YP_734913.1 3332510 R 60480 CDS YP_734914.1 113971121 4253357 complement(3334447..3336147) 1 NC_008321.1 KEGG: son:SO1425 hypothetical protein; hypothetical protein 3336147 4253357 Shewmr4_2786 Shewanella sp. MR-4 hypothetical protein YP_734914.1 3334447 R 60480 CDS YP_734915.1 113971122 4253358 complement(3336157..3338394) 1 NC_008321.1 KEGG: son:SO1424 hypothetical protein; hypothetical protein 3338394 4253358 Shewmr4_2787 Shewanella sp. MR-4 hypothetical protein YP_734915.1 3336157 R 60480 CDS YP_734916.1 113971123 4253359 complement(3339154..3339456) 1 NC_008321.1 PFAM: Heavy metal transport/detoxification protein; KEGG: son:SO1407 mercuric transport periplasmic protein MerP, putative; heavy metal transport/detoxification protein 3339456 4253359 Shewmr4_2788 Shewanella sp. MR-4 heavy metal transport/detoxification protein YP_734916.1 3339154 R 60480 CDS YP_734917.1 113971124 4253360 complement(3339453..3339770) 1 NC_008321.1 KEGG: son:SO1406 mercuric transport protein MerT, putative; mercuric transport protein MerT 3339770 4253360 Shewmr4_2789 Shewanella sp. MR-4 mercuric transport protein MerT YP_734917.1 3339453 R 60480 CDS YP_734918.1 113971125 4253361 complement(3339787..3340926) 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: transglutaminase domain protein; KEGG: son:SO1405 transglutaminase family protein; twin-arginine translocation pathway signal 3340926 4253361 Shewmr4_2790 Shewanella sp. MR-4 twin-arginine translocation pathway signal YP_734918.1 3339787 R 60480 CDS YP_734919.1 113971126 4253362 complement(3341178..3342449) 1 NC_008321.1 KEGG: vpa:VP2175 putative HAAAP family transport protein; HAAAP family transport protein 3342449 4253362 Shewmr4_2791 Shewanella sp. MR-4 HAAAP family transport protein YP_734919.1 3341178 R 60480 CDS YP_734920.1 113971127 4253363 3342706..3343089 1 NC_008321.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: son:SO1404 endoribonuclease L-PSP, putative; putative endoribonuclease L-PSP 3343089 4253363 Shewmr4_2792 Shewanella sp. MR-4 putative endoribonuclease L-PSP YP_734920.1 3342706 D 60480 CDS YP_734921.1 113971128 4253364 3343112..3344386 1 NC_008321.1 PFAM: protein of unknown function DUF1063; KEGG: son:SO1403 hypothetical protein; hypothetical protein 3344386 4253364 Shewmr4_2793 Shewanella sp. MR-4 hypothetical protein YP_734921.1 3343112 D 60480 CDS YP_734922.1 113971129 4253365 3344428..3345108 1 NC_008321.1 PFAM: YheO domain protein; KEGG: son:SO1402 hypothetical protein; YheO domain-containing protein 3345108 4253365 Shewmr4_2794 Shewanella sp. MR-4 YheO domain-containing protein YP_734922.1 3344428 D 60480 CDS YP_734923.1 113971130 4253366 complement(3345187..3346917) 1 NC_008321.1 KEGG: son:SO1401 hypothetical protein; hypothetical protein 3346917 4253366 Shewmr4_2795 Shewanella sp. MR-4 hypothetical protein YP_734923.1 3345187 R 60480 CDS YP_734924.1 113971131 4253367 complement(3346986..3347900) 1 NC_008321.1 PFAM: protein of unknown function DUF368; KEGG: son:SO1400 hypothetical protein; hypothetical protein 3347900 4253367 Shewmr4_2796 Shewanella sp. MR-4 hypothetical protein YP_734924.1 3346986 R 60480 CDS YP_734925.1 113971132 4253368 3348138..3348632 1 NC_008321.1 KEGG: sdn:Sden_2841 hypothetical protein; hypothetical protein 3348632 4253368 Shewmr4_2797 Shewanella sp. MR-4 hypothetical protein YP_734925.1 3348138 D 60480 CDS YP_734926.1 113971133 4253369 3348732..3349169 1 NC_008321.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: son:SO1397 cytosine deaminase; cytosine deaminase 3349169 4253369 Shewmr4_2798 Shewanella sp. MR-4 cytosine deaminase YP_734926.1 3348732 D 60480 CDS YP_734927.1 113971134 4253370 3349314..3350558 1 NC_008321.1 PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: son:SO1396 hypothetical protein; hypothetical protein 3350558 4253370 Shewmr4_2799 Shewanella sp. MR-4 hypothetical protein YP_734927.1 3349314 D 60480 CDS YP_734928.1 113971135 4253371 3350536..3351009 1 NC_008321.1 PFAM: protein of unknown function DUF1294; KEGG: son:SO1395 membrane protein,putative; hypothetical protein 3351009 4253371 Shewmr4_2800 Shewanella sp. MR-4 hypothetical protein YP_734928.1 3350536 D 60480 CDS YP_734929.1 113971136 4253372 complement(3351018..3351626) 1 NC_008321.1 PFAM: regulatory protein, TetR; KEGG: son:SO1393 transcriptional regulator, TetR family; TetR family transcriptional regulator 3351626 4253372 Shewmr4_2801 Shewanella sp. MR-4 TetR family transcriptional regulator YP_734929.1 3351018 R 60480 CDS YP_734930.1 113971137 4253373 3351878..3352357 1 NC_008321.1 PFAM: HPP family protein; KEGG: son:SO1392 hypothetical protein; HPP family protein 3352357 4253373 Shewmr4_2802 Shewanella sp. MR-4 HPP family protein YP_734930.1 3351878 D 60480 CDS YP_734931.1 113971138 4253374 complement(3352489..3353817) 1 NC_008321.1 PFAM: short chain fatty acid transporter; KEGG: son:SO1391 short-chain fatty acids transporter; short chain fatty acid transporter 3353817 4253374 Shewmr4_2803 Shewanella sp. MR-4 short chain fatty acid transporter YP_734931.1 3352489 R 60480 CDS YP_734932.1 113971139 4253375 3354039..3354509 1 NC_008321.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1390 peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 3354509 4253375 Shewmr4_2804 Shewanella sp. MR-4 peptidylprolyl isomerase, FKBP-type YP_734932.1 3354039 D 60480 CDS YP_734933.1 113971140 4253376 complement(3354576..3357182) 1 NC_008321.1 KEGG: sdn:Sden_2136 chitinase; PFAM: PKD domain containing protein; glycoside hydrolase, family 18; Carbohydrate-binding family V/XII; Chitinase A N-terminal domain protein; SMART: chitinase II; glycosyl hydrolase family chitinase 3357182 4253376 Shewmr4_2805 Shewanella sp. MR-4 glycosyl hydrolase family chitinase YP_734933.1 3354576 R 60480 CDS YP_734934.1 113971141 4253377 complement(3357825..3358616) 1 NC_008321.1 PFAM: ROK family protein; KEGG: son:SO1389 ROK family protein; ROK family protein 3358616 4253377 Shewmr4_2806 Shewanella sp. MR-4 ROK family protein YP_734934.1 3357825 R 60480 CDS YP_734935.1 113971142 4253378 3358978..3360795 1 NC_008321.1 PFAM: peptidase M24; KEGG: son:SO1388 aminopeptidase P, putative; peptidase M24 3360795 4253378 Shewmr4_2807 Shewanella sp. MR-4 peptidase M24 YP_734935.1 3358978 D 60480 CDS YP_734936.1 113971143 4253379 3361263..3362831 1 NC_008321.1 KEGG: son:SO1385 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3362831 4253379 Shewmr4_2808 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_734936.1 3361263 D 60480 CDS YP_734937.1 113971144 4253380 3363156..3364457 1 NC_008321.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1383 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase domain-containing protein 3364457 4253380 Shewmr4_2809 Shewanella sp. MR-4 DEAD/DEAH box helicase domain-containing protein YP_734937.1 3363156 D 60480 CDS YP_734938.1 113971145 4253381 complement(3364689..3365582) 1 NC_008321.1 KEGG: son:SO1382 hypothetical protein; hypothetical protein 3365582 4253381 Shewmr4_2810 Shewanella sp. MR-4 hypothetical protein YP_734938.1 3364689 R 60480 CDS YP_734939.1 113971146 4253382 3365890..3366537 1 NC_008321.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO1381 hypothetical protein; redoxin domain-containing protein 3366537 4253382 Shewmr4_2811 Shewanella sp. MR-4 redoxin domain-containing protein YP_734939.1 3365890 D 60480 CDS YP_734940.1 113971147 4253383 3366667..3367302 1 NC_008321.1 KEGG: son:SO1380 hypothetical protein; hypothetical protein 3367302 4253383 Shewmr4_2812 Shewanella sp. MR-4 hypothetical protein YP_734940.1 3366667 D 60480 CDS YP_734941.1 113971148 4253384 3367421..3368170 1 NC_008321.1 KEGG: sdn:Sden_0883 hypothetical protein; hypothetical protein 3368170 4253384 Shewmr4_2813 Shewanella sp. MR-4 hypothetical protein YP_734941.1 3367421 D 60480 CDS YP_734942.1 113971149 4253385 complement(3368280..3368588) 1 NC_008321.1 KEGG: son:SO1379 hypothetical protein; hypothetical protein 3368588 4253385 Shewmr4_2814 Shewanella sp. MR-4 hypothetical protein YP_734942.1 3368280 R 60480 CDS YP_734943.1 113971150 4253386 complement(3368693..3369253) 1 NC_008321.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: son:SO1378 ThiJ/PfpI family protein; PfpI family intracellular peptidase 3369253 4253386 Shewmr4_2815 Shewanella sp. MR-4 PfpI family intracellular peptidase YP_734943.1 3368693 R 60480 CDS YP_734944.1 113971151 4253387 complement(3369410..3371188) 1 NC_008321.1 PFAM: band 7 protein; KEGG: son:SO1377 hypothetical protein; hypothetical protein 3371188 4253387 Shewmr4_2816 Shewanella sp. MR-4 hypothetical protein YP_734944.1 3369410 R 60480 CDS YP_734945.1 113971152 4253388 complement(3371222..3371857) 1 NC_008321.1 PFAM: protein of unknown function DUF1449; KEGG: son:SO1376 hypothetical protein; hypothetical protein 3371857 4253388 Shewmr4_2817 Shewanella sp. MR-4 hypothetical protein YP_734945.1 3371222 R 60480 CDS YP_734946.1 113971153 4253389 complement(3371964..3372530) 1 NC_008321.1 KEGG: eli:ELI_10435 hypothetical protein; hypothetical protein 3372530 4253389 Shewmr4_2818 Shewanella sp. MR-4 hypothetical protein YP_734946.1 3371964 R 60480 CDS YP_734947.1 113971154 4253390 3372600..3374105 1 NC_008321.1 PFAM: peptidase M32, carboxypeptidase Taq metallopeptidase; KEGG: son:SO1375 carboxypeptidase; carboxypeptidase Taq 3374105 4253390 Shewmr4_2819 Shewanella sp. MR-4 carboxypeptidase Taq YP_734947.1 3372600 D 60480 CDS YP_734948.1 113971155 4253391 3374224..3374718 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1374 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 3374718 4253391 Shewmr4_2820 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_734948.1 3374224 D 60480 CDS YP_734949.1 113971156 4253392 3374715..3375068 1 NC_008321.1 PFAM: protein of unknown function DUF486; KEGG: son:SO1373 hypothetical protein; hypothetical protein 3375068 4253392 Shewmr4_2821 Shewanella sp. MR-4 hypothetical protein YP_734949.1 3374715 D 60480 CDS YP_734950.1 113971157 4253393 3375106..3375363 1 NC_008321.1 KEGG: son:SO1372 hypothetical protein; hypothetical protein 3375363 4253393 Shewmr4_2822 Shewanella sp. MR-4 hypothetical protein YP_734950.1 3375106 D 60480 CDS YP_734951.1 113971158 4253394 3375403..3375912 1 NC_008321.1 PFAM: RDD domain containing protein; KEGG: son:SO1371 hypothetical protein; RDD domain-containing protein 3375912 4253394 Shewmr4_2823 Shewanella sp. MR-4 RDD domain-containing protein YP_734951.1 3375403 D 60480 CDS YP_734952.1 113971159 4253395 3375962..3376627 1 NC_008321.1 hypothetical protein 3376627 4253395 Shewmr4_2824 Shewanella sp. MR-4 hypothetical protein YP_734952.1 3375962 D 60480 CDS YP_734953.1 113971160 4253396 complement(3376689..3377747) 1 NC_008321.1 PFAM: permease YjgP/YjgQ family protein; KEGG: son:SO1370 hypothetical protein; permease YjgP/YjgQ family protein 3377747 4253396 Shewmr4_2825 Shewanella sp. MR-4 permease YjgP/YjgQ family protein YP_734953.1 3376689 R 60480 CDS YP_734954.1 113971161 4253397 complement(3377744..3378856) 1 NC_008321.1 PFAM: permease YjgP/YjgQ family protein; KEGG: son:SO1369 hypothetical protein; permease YjgP/YjgQ family protein 3378856 4253397 Shewmr4_2826 Shewanella sp. MR-4 permease YjgP/YjgQ family protein YP_734954.1 3377744 R 60480 CDS YP_734955.1 113971162 4253398 3379112..3380620 1 NC_008321.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 3380620 4253398 Shewmr4_2827 Shewanella sp. MR-4 leucyl aminopeptidase YP_734955.1 3379112 D 60480 CDS YP_734956.1 113971163 4253399 3380953..3382956 1 NC_008321.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: son:SO1367 prephenate dehydratase / chorismate mutase / phospho-2-dehydro-3-deoxyheptonate aldolase; prephenate dehydratase / chorismate mutase 3382956 4253399 Shewmr4_2828 Shewanella sp. MR-4 prephenate dehydratase / chorismate mutase YP_734956.1 3380953 D 60480 CDS YP_734957.1 113971164 4253400 complement(3383102..3384406) 1 NC_008321.1 PFAM: sodium/hydrogen exchanger; KEGG: son:SO1366 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger 3384406 4253400 Shewmr4_2829 Shewanella sp. MR-4 sodium/hydrogen exchanger YP_734957.1 3383102 R 60480 CDS YP_734958.1 113971165 4253401 complement(3384452..3384787) 1 NC_008321.1 KEGG: son:SO1365 hypothetical protein; hypothetical protein 3384787 4253401 Shewmr4_2830 Shewanella sp. MR-4 hypothetical protein YP_734958.1 3384452 R 60480 CDS YP_734959.1 113971166 4253402 complement(3384951..3386081) 1 NC_008321.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO1364 iron-sulfur cluster-binding protein; oxidoreductase FAD-binding subunit 3386081 4253402 Shewmr4_2831 Shewanella sp. MR-4 oxidoreductase FAD-binding subunit YP_734959.1 3384951 R 60480 CDS YP_734960.1 113971167 4253403 complement(3386132..3387796) 1 NC_008321.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 3387796 4253403 Shewmr4_2832 Shewanella sp. MR-4 hydroxylamine reductase YP_734960.1 3386132 R 60480 CDS YP_734961.1 113971168 4253404 complement(3388014..3389153) 1 NC_008321.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 3389153 tyrA 4253404 tyrA Shewanella sp. MR-4 bifunctional chorismate mutase/prephenate dehydrogenase YP_734961.1 3388014 R 60480 CDS YP_734962.1 113971169 4253405 complement(3389216..3390307) 1 NC_008321.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3390307 4253405 Shewmr4_2834 Shewanella sp. MR-4 phospho-2-dehydro-3-deoxyheptonate aldolase YP_734962.1 3389216 R 60480 CDS YP_734963.1 113971170 4253406 complement(3390973..3391326) 1 NC_008321.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 3391326 rplS 4253406 rplS Shewanella sp. MR-4 50S ribosomal protein L19 YP_734963.1 3390973 R 60480 CDS YP_734964.1 113971171 4253407 complement(3391361..3392107) 1 NC_008321.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 3392107 trmD 4253407 trmD Shewanella sp. MR-4 tRNA (guanine-N(1)-)-methyltransferase YP_734964.1 3391361 R 60480 CDS YP_734965.1 113971172 4253408 complement(3392123..3392653) 1 NC_008321.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 3392653 rimM 4253408 rimM Shewanella sp. MR-4 16S rRNA-processing protein RimM YP_734965.1 3392123 R 60480 CDS YP_734966.1 113971173 4253409 complement(3392674..3392922) 1 NC_008321.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 3392922 rpsP 4253409 rpsP Shewanella sp. MR-4 30S ribosomal protein S16 YP_734966.1 3392674 R 60480 CDS YP_734967.1 113971174 4253410 complement(3393141..3394514) 1 NC_008321.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 3394514 4253410 Shewmr4_2839 Shewanella sp. MR-4 signal recognition particle protein YP_734967.1 3393141 R 60480 CDS YP_734968.1 113971175 4253411 3394803..3395591 1 NC_008321.1 PFAM: cytochrome c assembly protein; KEGG: son:SO1355 hypothetical protein; cytochrome c assembly protein 3395591 4253411 Shewmr4_2840 Shewanella sp. MR-4 cytochrome c assembly protein YP_734968.1 3394803 D 60480 CDS YP_734969.1 113971176 4253412 3395693..3396964 1 NC_008321.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO1354 hemolysin protein, putative; hypothetical protein 3396964 4253412 Shewmr4_2841 Shewanella sp. MR-4 hypothetical protein YP_734969.1 3395693 D 60480 CDS YP_734970.1 113971177 4253413 complement(3397030..3397566) 1 NC_008321.1 PFAM: protein of unknown function DUF962; KEGG: son:SO1353 hypothetical protein; hypothetical protein 3397566 4253413 Shewmr4_2842 Shewanella sp. MR-4 hypothetical protein YP_734970.1 3397030 R 60480 CDS YP_734971.1 113971178 4253414 complement(3397756..3398193) 1 NC_008321.1 PFAM: transposase IS200-family protein; KEGG: vch:VCA0275 IS1004 transposase; transposase IS200-family protein 3398193 4253414 Shewmr4_2843 Shewanella sp. MR-4 transposase IS200-family protein YP_734971.1 3397756 R 60480 CDS YP_734972.1 113971179 4253415 complement(3398357..3398740) 1 NC_008321.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 3398740 acpS 4253415 acpS Shewanella sp. MR-4 4'-phosphopantetheinyl transferase YP_734972.1 3398357 R 60480 CDS YP_734973.1 113971180 4253416 complement(3398740..3399477) 1 NC_008321.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 3399477 4253416 Shewmr4_2845 Shewanella sp. MR-4 pyridoxine 5'-phosphate synthase YP_734973.1 3398740 R 60480 CDS YP_734974.1 113971181 4253417 complement(3399567..3400268) 1 NC_008321.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: son:SO1350 DNA repair protein RecO; DNA repair protein RecO 3400268 4253417 Shewmr4_2846 Shewanella sp. MR-4 DNA repair protein RecO YP_734974.1 3399567 R 60480 CDS YP_734975.1 113971182 4253418 complement(3400318..3401337) 1 NC_008321.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 3401337 era 4253418 era Shewanella sp. MR-4 GTP-binding protein Era YP_734975.1 3400318 R 60480 CDS YP_734976.1 113971183 4253419 complement(3401334..3402014) 1 NC_008321.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 3402014 rnc 4253419 rnc Shewanella sp. MR-4 ribonuclease III YP_734976.1 3401334 R 60480 CDS YP_734977.1 113971184 4253420 complement(3402016..3402933) 1 NC_008321.1 KEGG: son:SO1347 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 3402933 4253420 Shewmr4_2849 Shewanella sp. MR-4 signal peptidase I YP_734977.1 3402016 R 60480 CDS YP_734978.1 113971185 4253421 complement(3403113..3404903) 1 NC_008321.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 3404903 4253421 Shewmr4_2850 Shewanella sp. MR-4 GTP-binding protein LepA YP_734978.1 3403113 R 60480 CDS YP_734979.1 113971186 4253422 complement(3405071..3405544) 1 NC_008321.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: son:SO1345 sigma-E factor regulatory protein RseC; positive regulator of sigma(E), RseC/MucC 3405544 4253422 Shewmr4_2851 Shewanella sp. MR-4 positive regulator of sigma(E), RseC/MucC YP_734979.1 3405071 R 60480 CDS YP_734980.1 113971187 4253423 complement(3405556..3406488) 1 NC_008321.1 PFAM: MucB/RseB family protein; KEGG: son:SO1344 sigma-E factor regulatory protein RseB; sigma E regulatory protein, MucB/RseB 3406488 4253423 Shewmr4_2852 Shewanella sp. MR-4 sigma E regulatory protein, MucB/RseB YP_734980.1 3405556 R 60480 CDS YP_734981.1 113971188 4253424 complement(3406501..3407124) 1 NC_008321.1 PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: son:SO1343 sigma-E factor negative regulatory protein; anti sigma-E protein, RseA 3407124 4253424 Shewmr4_2853 Shewanella sp. MR-4 anti sigma-E protein, RseA YP_734981.1 3406501 R 60480 CDS YP_734982.1 113971189 4253425 complement(3407151..3407729) 1 NC_008321.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 3407729 4253425 Shewmr4_2854 Shewanella sp. MR-4 RNA polymerase sigma factor RpoE YP_734982.1 3407151 R 60480 CDS YP_734983.1 113971190 4253426 3407919..3409532 1 NC_008321.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 3409532 4253426 Shewmr4_2855 Shewanella sp. MR-4 L-aspartate oxidase YP_734983.1 3407919 D 60480 CDS YP_734984.1 113971191 4253427 complement(3409648..3410088) 1 NC_008321.1 KEGG: son:SO1340 hypothetical protein; hypothetical protein 3410088 4253427 Shewmr4_2856 Shewanella sp. MR-4 hypothetical protein YP_734984.1 3409648 R 60480 CDS YP_734985.1 113971192 4253428 complement(3410069..3410308) 1 NC_008321.1 PFAM: protein of unknown function DUF339; KEGG: son:SO1339 hypothetical protein; hypothetical protein 3410308 4253428 Shewmr4_2857 Shewanella sp. MR-4 hypothetical protein YP_734985.1 3410069 R 60480 CDS YP_734986.1 113971193 4253429 complement(3410401..3411309) 1 NC_008321.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 3411309 nhaR 4253429 nhaR Shewanella sp. MR-4 transcriptional activator NhaR YP_734986.1 3410401 R 60480 CDS YP_734987.1 113971194 4253430 complement(3411405..3411791) 1 NC_008321.1 KEGG: son:SO1337 hypothetical protein; hypothetical protein 3411791 4253430 Shewmr4_2859 Shewanella sp. MR-4 hypothetical protein YP_734987.1 3411405 R 60480 CDS YP_734988.1 113971195 4253431 complement(3411794..3412963) 1 NC_008321.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 3412963 nhaA 4253431 nhaA Shewanella sp. MR-4 pH-dependent sodium/proton antiporter YP_734988.1 3411794 R 60480 CDS YP_734989.1 113971196 4253432 complement(3413081..3413875) 1 NC_008321.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 3413875 thyA 4253432 thyA Shewanella sp. MR-4 thymidylate synthase YP_734989.1 3413081 R 60480 CDS YP_734990.1 113971197 4253433 complement(3413875..3414681) 1 NC_008321.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3414681 4253433 Shewmr4_2862 Shewanella sp. MR-4 prolipoprotein diacylglyceryl transferase YP_734990.1 3413875 R 60480 CDS YP_734991.1 113971198 4253434 complement(3414727..3415527) 1 NC_008321.1 PFAM: protein of unknown function DUF81; KEGG: son:SO1333 hypothetical protein; hypothetical protein 3415527 4253434 Shewmr4_2863 Shewanella sp. MR-4 hypothetical protein YP_734991.1 3414727 R 60480 CDS YP_734992.1 113971199 4253435 complement(3415586..3417820) 1 NC_008321.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: son:SO1332 phosphoenolpyruvate-protein phosphotransferase PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP 3417820 4253435 Shewmr4_2864 Shewanella sp. MR-4 phosphoenolpyruvate-protein phosphotransferase PtsP YP_734992.1 3415586 R 60480 CDS YP_734993.1 113971200 4253436 complement(3417844..3418368) 1 NC_008321.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 3418368 4253436 Shewmr4_2865 Shewanella sp. MR-4 dinucleoside polyphosphate hydrolase YP_734993.1 3417844 R 60480 CDS YP_734994.1 113971201 4253437 3419060..3419731 1 NC_008321.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3419731 4253437 Shewmr4_2866 Shewanella sp. MR-4 DNA mismatch repair protein YP_734994.1 3419060 D 60480 CDS YP_734995.1 113971202 4253438 3419915..3420922 1 NC_008321.1 KEGG: son:SO1329 adenylate cyclase-related protein; putative adenylate/guanylate cyclase 3420922 4253438 Shewmr4_2867 Shewanella sp. MR-4 putative adenylate/guanylate cyclase YP_734995.1 3419915 D 60480 CDS YP_734996.1 113971203 4253439 complement(3420948..3421859) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1328 transcriptional regulator, LysR family; LysR family transcriptional regulator 3421859 4253439 Shewmr4_2868 Shewanella sp. MR-4 LysR family transcriptional regulator YP_734996.1 3420948 R 60480 CDS YP_734997.1 113971204 4253440 complement(3422078..3422443) 1 NC_008321.1 PFAM: Hpt domain protein; KEGG: son:SO1327 sensor histidine kinase-related protein; Hpt protein 3422443 4253440 Shewmr4_2869 Shewanella sp. MR-4 Hpt protein YP_734997.1 3422078 R 60480 CDS YP_734998.1 113971205 4253441 complement(3422628..3423557) 1 NC_008321.1 KEGG: son:SO1326 hypothetical protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; putative radical SAM protein 3423557 4253441 Shewmr4_2870 Shewanella sp. MR-4 putative radical SAM protein YP_734998.1 3422628 R 60480 CDS YP_734999.1 113971206 4253442 complement(3423557..3423796) 1 NC_008321.1 hypothetical protein 3423796 4253442 Shewmr4_2871 Shewanella sp. MR-4 hypothetical protein YP_734999.1 3423557 R 60480 CDS YP_735000.1 113971207 4253443 3424144..3428592 1 NC_008321.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3428592 gltB 4253443 gltB Shewanella sp. MR-4 glutamate synthase subunit alpha YP_735000.1 3424144 D 60480 CDS YP_735001.1 113971208 4253444 3428599..3430005 1 NC_008321.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3430005 gltD 4253444 gltD Shewanella sp. MR-4 glutamate synthase subunit beta YP_735001.1 3428599 D 60480 CDS YP_735002.1 113971209 4253445 3430253..3430963 1 NC_008321.1 PFAM: purine and other phosphorylases, family 1; KEGG: son:SO1322 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase; methylthioadenosine nucleosidase 3430963 4253445 Shewmr4_2874 Shewanella sp. MR-4 methylthioadenosine nucleosidase YP_735002.1 3430253 D 60480 CDS YP_735003.1 113971210 4253446 3430995..3431987 1 NC_008321.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: son:SO1321 CobD-related protein; cobalamin biosynthesis protein CbiB 3431987 4253446 Shewmr4_2875 Shewanella sp. MR-4 cobalamin biosynthesis protein CbiB YP_735003.1 3430995 D 60480 CDS YP_735004.1 113971211 4253447 3432043..3432420 1 NC_008321.1 KEGG: son:SO1320 hypothetical protein; hypothetical protein 3432420 4253447 Shewmr4_2876 Shewanella sp. MR-4 hypothetical protein YP_735004.1 3432043 D 60480 CDS YP_735005.1 113971212 4253448 3432417..3433043 1 NC_008321.1 PFAM: protein of unknown function UPF0126; KEGG: son:SO1319 hypothetical protein; hypothetical protein 3433043 4253448 Shewmr4_2877 Shewanella sp. MR-4 hypothetical protein YP_735005.1 3432417 D 60480 CDS YP_735006.1 113971213 4253449 3433045..3433536 1 NC_008321.1 KEGG: son:SO1318 hypothetical protein; hypothetical protein 3433536 4253449 Shewmr4_2878 Shewanella sp. MR-4 hypothetical protein YP_735006.1 3433045 D 60480 CDS YP_735007.1 113971214 4253450 3433661..3434089 1 NC_008321.1 KEGG: son:SO1317 hypothetical protein; hypothetical protein 3434089 4253450 Shewmr4_2879 Shewanella sp. MR-4 hypothetical protein YP_735007.1 3433661 D 60480 CDS YP_735008.1 113971215 4253451 complement(3434242..3435468) 1 NC_008321.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 3435468 4253451 Shewmr4_2880 Shewanella sp. MR-4 tyrosyl-tRNA synthetase YP_735008.1 3434242 R 60480 CDS YP_735009.1 113971216 4253452 3435566..3436966 1 NC_008321.1 PFAM: peptidase M23B; Opacity-associated protein A, N-terminal domain protein; KEGG: son:SO1314 peptidase, M23/M37 family; peptidase M23B 3436966 4253452 Shewmr4_2881 Shewanella sp. MR-4 peptidase M23B YP_735009.1 3435566 D 60480 CDS YP_735010.1 113971217 4253453 3436986..3438095 1 NC_008321.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 3438095 anmK 4253453 anmK Shewanella sp. MR-4 anhydro-N-acetylmuramic acid kinase YP_735010.1 3436986 D 60480 CDS YP_735011.1 113971218 4253454 complement(3438105..3440255) 1 NC_008321.1 PFAM: transcriptional regulator domain protein; WD40 domain protein beta Propeller; KEGG: son:SO1312 TolB domain protein; transcriptional regulator domain-containing protein 3440255 4253454 Shewmr4_2883 Shewanella sp. MR-4 transcriptional regulator domain-containing protein YP_735011.1 3438105 R 60480 CDS YP_735012.1 113971219 4253455 3440565..3442970 1 NC_008321.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1310 hypothetical protein; glutamyl peptidase 3442970 4253455 Shewmr4_2884 Shewanella sp. MR-4 glutamyl peptidase YP_735012.1 3440565 D 60480 CDS YP_735013.1 113971220 4253456 complement(3443486..3446509) 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1309 hypothetical TonB-dependent receptor; TonB-dependent receptor 3446509 4253456 Shewmr4_2885 Shewanella sp. MR-4 TonB-dependent receptor YP_735013.1 3443486 R 60480 CDS YP_735014.1 113971221 4253457 3447200..3447895 1 NC_008321.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 3447895 4253457 Shewmr4_2886 Shewanella sp. MR-4 aquaporin Z YP_735014.1 3447200 D 60480 CDS YP_735015.1 113971222 4253458 3448051..3448431 1 NC_008321.1 KEGG: son:SO1306 hypothetical protein; hypothetical protein 3448431 4253458 Shewmr4_2887 Shewanella sp. MR-4 hypothetical protein YP_735015.1 3448051 D 60480 CDS YP_735016.1 113971223 4253459 3448450..3448905 1 NC_008321.1 KEGG: son:SO1305 hypothetical protein; hypothetical protein 3448905 4253459 Shewmr4_2888 Shewanella sp. MR-4 hypothetical protein YP_735016.1 3448450 D 60480 CDS YP_735017.1 113971224 4253460 complement(3449034..3449384) 1 NC_008321.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 3449384 4253460 Shewmr4_2889 Shewanella sp. MR-4 iron-sulfur cluster insertion protein ErpA YP_735017.1 3449034 R 60480 CDS YP_735018.1 113971225 4253461 complement(3449377..3450183) 1 NC_008321.1 KEGG: son:SO1303 hypothetical protein; hypothetical protein 3450183 4253461 Shewmr4_2890 Shewanella sp. MR-4 hypothetical protein YP_735018.1 3449377 R 60480 CDS YP_735019.1 113971226 4253462 3450258..3451982 1 NC_008321.1 PFAM: Cl- channel, voltage-gated family protein; KEGG: son:SO1302 chloride channel; Cl- channel, voltage-gated family protein 3451982 4253462 Shewmr4_2891 Shewanella sp. MR-4 Cl- channel, voltage-gated family protein YP_735019.1 3450258 D 60480 CDS YP_735020.1 113971227 4253463 3452173..3453192 1 NC_008321.1 Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase 3453192 4253463 Shewmr4_2892 Shewanella sp. MR-4 aspartate carbamoyltransferase YP_735020.1 3452173 D 60480 CDS YP_735021.1 113971228 4253464 3453219..3454511 1 NC_008321.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3454511 4253464 Shewmr4_2893 Shewanella sp. MR-4 glutamate-1-semialdehyde aminotransferase YP_735021.1 3453219 D 60480 CDS YP_735022.1 113971229 4253465 3455267..3456577 1 NC_008321.1 PFAM: Citrate transporter; KEGG: sdn:Sden_2820 citrate transporter; citrate transporter 3456577 4253465 Shewmr4_2894 Shewanella sp. MR-4 citrate transporter YP_735022.1 3455267 D 60480 CDS YP_735023.1 113971230 4253466 complement(3456640..3457773) 1 NC_008321.1 KEGG: son:SO1298 general secretion pathway protein B; general secretion pathway protein B 3457773 4253466 Shewmr4_2895 Shewanella sp. MR-4 general secretion pathway protein B YP_735023.1 3456640 R 60480 CDS YP_735024.1 113971231 4253467 complement(3457773..3459461) 1 NC_008321.1 PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: son:SO1297 general secretion pathway protein A; peptidoglycan binding domain-containing protein 3459461 4253467 Shewmr4_2896 Shewanella sp. MR-4 peptidoglycan binding domain-containing protein YP_735024.1 3457773 R 60480 CDS YP_735025.1 113971232 4253468 3459636..3460886 1 NC_008321.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: sdn:Sden_2823 polynucleotide adenylyltransferase region; metal dependent phosphohydrolase 3460886 4253468 Shewmr4_2897 Shewanella sp. MR-4 metal dependent phosphohydrolase YP_735025.1 3459636 D 60480 CDS YP_735026.1 113971233 4253469 3461121..3461387 1 NC_008321.1 KEGG: son:SO1295 major outer membrane lipoprotein, putative; major outer membrane lipoprotein 3461387 4253469 Shewmr4_2898 Shewanella sp. MR-4 major outer membrane lipoprotein YP_735026.1 3461121 D 60480 CDS YP_735027.1 113971234 4253470 complement(3462011..3462850) 1 NC_008321.1 KEGG: son:SO1294 ribosomal RNA large subunit methyltransferase A, putative; rRNA (guanine-N(1)-)-methyltransferase 3462850 4253470 Shewmr4_2899 Shewanella sp. MR-4 rRNA (guanine-N(1)-)-methyltransferase YP_735027.1 3462011 R 60480 CDS YP_735028.1 113971235 4253471 complement(3462935..3463735) 1 NC_008321.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 3463735 4253471 Shewmr4_2900 Shewanella sp. MR-4 undecaprenyl pyrophosphate phosphatase YP_735028.1 3462935 R 60480 CDS YP_735029.1 113971236 4253472 complement(3463754..3464263) 1 NC_008321.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: son:SO1292 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3464263 4253472 Shewmr4_2901 Shewanella sp. MR-4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_735029.1 3463754 R 60480 CDS YP_735030.1 113971237 4253473 complement(3464314..3464664) 1 NC_008321.1 TIGRFAM: dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; KEGG: son:SO1291 dihydroneopterin aldolase; dihydroneopterin aldolase 3464664 4253473 Shewmr4_2902 Shewanella sp. MR-4 dihydroneopterin aldolase YP_735030.1 3464314 R 60480 CDS YP_735031.1 113971238 4253474 3464903..3465514 1 NC_008321.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 3465514 4253474 Shewmr4_2903 Shewanella sp. MR-4 putative glycerol-3-phosphate acyltransferase PlsY YP_735031.1 3464903 D 60480 CDS YP_735032.1 113971239 4253475 complement(3465690..3466706) 1 NC_008321.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 3466706 4253475 Shewmr4_2904 Shewanella sp. MR-4 putative DNA-binding/iron metalloprotein/AP endonuclease YP_735032.1 3465690 R 60480 CDS YP_735033.1 113971240 4253476 3466921..3467136 1 NC_008321.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3467136 rpsU 4253476 rpsU Shewanella sp. MR-4 30S ribosomal protein S21 YP_735033.1 3466921 D 60480 CDS YP_735034.1 113971241 4253477 3467143..3467586 1 NC_008321.1 PFAM: GatB/Yqey domain protein; KEGG: son:SO1287 hypothetical protein; GatB/Yqey domain-containing protein 3467586 4253477 Shewmr4_2906 Shewanella sp. MR-4 GatB/Yqey domain-containing protein YP_735034.1 3467143 D 60480 CDS YP_735035.1 113971242 4253478 3467670..3469394 1 NC_008321.1 KEGG: son:SO1286 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase DnaG, DnaB-binding; DNA primase catalytic core, N-terminal domain protein; SMART: Toprim sub domain protein; DNA primase 3469394 4253478 Shewmr4_2907 Shewanella sp. MR-4 DNA primase YP_735035.1 3467670 D 60480 CDS YP_735036.1 113971243 4253479 3469521..3471380 1 NC_008321.1 TIGRFAM: RNA polymerase sigma factor RpoD; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: son:SO1284 RNA polymerase sigma-70 factor; RNA polymerase, sigma 70 subunit, RpoD 3471380 4253479 Shewmr4_2908 Shewanella sp. MR-4 RNA polymerase, sigma 70 subunit, RpoD YP_735036.1 3469521 D 60480 CDS YP_735037.1 113971244 4253480 complement(3471962..3474082) 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO1278 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3474082 4253480 Shewmr4_2909 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_735037.1 3471962 R 60480 CDS YP_735038.1 113971245 4253481 3474502..3476052 1 NC_008321.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: son:SO1277 proton-dependent oligopeptide transporter (POT) family protein; amino acid/peptide transporter 3476052 4253481 Shewmr4_2910 Shewanella sp. MR-4 amino acid/peptide transporter YP_735038.1 3474502 D 60480 CDS YP_735039.1 113971246 4253482 3476422..3477468 1 NC_008321.1 PFAM: luciferase family protein; KEGG: pha:PSHAb0540 putative alkanal monooxygenase (FMN-linked); luciferase family protein 3477468 4253482 Shewmr4_2911 Shewanella sp. MR-4 luciferase family protein YP_735039.1 3476422 D 60480 CDS YP_735040.1 113971247 4253483 complement(3477521..3478798) 1 NC_008321.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 3478798 4253483 Shewmr4_2912 Shewanella sp. MR-4 4-aminobutyrate aminotransferase YP_735040.1 3477521 R 60480 CDS YP_735041.1 113971248 4253484 complement(3478901..3480349) 1 NC_008321.1 KEGG: son:SO1275 succinate-semialdehyde dehydrogenase (NADP+); TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate semialdehyde dehydrogenase 3480349 4253484 Shewmr4_2913 Shewanella sp. MR-4 succinate semialdehyde dehydrogenase YP_735041.1 3478901 R 60480 CDS YP_735042.1 113971249 4253485 complement(3480406..3481692) 1 NC_008321.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO1274 probable oxidoreductase; FAD dependent oxidoreductase 3481692 4253485 Shewmr4_2914 Shewanella sp. MR-4 FAD dependent oxidoreductase YP_735042.1 3480406 R 60480 CDS YP_735043.1 113971250 4253486 complement(3481971..3482786) 1 NC_008321.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1273 polyamine ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 3482786 4253486 Shewmr4_2915 Shewanella sp. MR-4 binding-protein-dependent transport systems inner membrane component YP_735043.1 3481971 R 60480 CDS YP_735044.1 113971251 4253487 complement(3482783..3483688) 1 NC_008321.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1272 polyamine ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 3483688 4253487 Shewmr4_2916 Shewanella sp. MR-4 binding-protein-dependent transport systems inner membrane component YP_735044.1 3482783 R 60480 CDS YP_735045.1 113971252 4253488 complement(3483685..3484821) 1 NC_008321.1 KEGG: son:SO1271 polyamine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase subunit 3484821 4253488 Shewmr4_2917 Shewanella sp. MR-4 spermidine/putrescine ABC transporter ATPase subunit YP_735045.1 3483685 R 60480 CDS YP_735046.1 113971253 4253489 complement(3484981..3486144) 1 NC_008321.1 PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO1270 polyamine ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein 3486144 4253489 Shewmr4_2918 Shewanella sp. MR-4 extracellular solute-binding protein YP_735046.1 3484981 R 60480 CDS YP_735047.1 113971254 4253490 complement(3486698..3488053) 1 NC_008321.1 PFAM: glutamine synthetase, catalytic region; KEGG: son:SO1268 glutamine synthetase; L-glutamine synthetase 3488053 4253490 Shewmr4_2919 Shewanella sp. MR-4 L-glutamine synthetase YP_735047.1 3486698 R 60480 CDS YP_735048.1 113971255 4253491 complement(3488055..3488816) 1 NC_008321.1 PFAM: peptidase C26; KEGG: son:SO1267 hypothetical glutamine amidotransferase; peptidase C26 3488816 4253491 Shewmr4_2920 Shewanella sp. MR-4 peptidase C26 YP_735048.1 3488055 R 60480 CDS YP_735049.1 113971256 4253492 complement(3489209..3489835) 1 NC_008321.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: son:SO1265 transcriptional regulator, putative; XRE family transcriptional regulator 3489835 4253492 Shewmr4_2921 Shewanella sp. MR-4 XRE family transcriptional regulator YP_735049.1 3489209 R 60480 CDS YP_735050.1 113971257 4253493 3489992..3491299 1 NC_008321.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO1264 hypothetical oxidoreductase; FAD dependent oxidoreductase 3491299 4253493 Shewmr4_2922 Shewanella sp. MR-4 FAD dependent oxidoreductase YP_735050.1 3489992 D 60480 CDS YP_735051.1 113971258 4253494 complement(3491344..3491856) 1 NC_008321.1 KEGG: son:SO1262 hypothetical protein; hypothetical protein 3491856 4253494 Shewmr4_2923 Shewanella sp. MR-4 hypothetical protein YP_735051.1 3491344 R 60480 CDS YP_735052.1 113971259 4253495 complement(3491941..3492798) 1 NC_008321.1 PFAM: Rhodanese domain protein; KEGG: son:SO1261 mercaptopyruvate sulfurtransferase; 3-mercaptopyruvate sulfurtransferase 3492798 4253495 Shewmr4_2924 Shewanella sp. MR-4 3-mercaptopyruvate sulfurtransferase YP_735052.1 3491941 R 60480 CDS YP_735053.1 113971260 4253496 complement(3492944..3493339) 1 NC_008321.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: ilo:IL1764 lipoprotein A family protein; rare lipoprotein A 3493339 4253496 Shewmr4_2925 Shewanella sp. MR-4 rare lipoprotein A YP_735053.1 3492944 R 60480 CDS YP_735054.1 113971261 4253497 complement(3493502..3494998) 1 NC_008321.1 PFAM: aldehyde dehydrogenase; KEGG: son:SO3496 aldehyde dehydrogenase; aldehyde dehydrogenase (acceptor) 3494998 4253497 Shewmr4_2926 Shewanella sp. MR-4 aldehyde dehydrogenase (acceptor) YP_735054.1 3493502 R 60480 CDS YP_735055.1 113971262 4253498 3495279..3496619 1 NC_008321.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 3496619 4253498 Shewmr4_2927 Shewanella sp. MR-4 beta alanine--pyruvate transaminase YP_735055.1 3495279 D 60480 CDS YP_735056.1 113971263 4253499 3496671..3498161 1 NC_008321.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: hch:HCH_01157 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 3498161 4253499 Shewmr4_2928 Shewanella sp. MR-4 methylmalonate-semialdehyde dehydrogenase YP_735056.1 3496671 D 60480 CDS YP_735057.1 113971264 4253500 3498178..3498543 1 NC_008321.1 PFAM: protein of unknown function DUF861, cupin_3; KEGG: son:SO3501 hypothetical protein; hypothetical protein 3498543 4253500 Shewmr4_2929 Shewanella sp. MR-4 hypothetical protein YP_735057.1 3498178 D 60480 CDS YP_735058.1 113971265 4253501 3498728..3499450 1 NC_008321.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO3502 hypothetical protein; hypothetical protein 3499450 4253501 Shewmr4_2930 Shewanella sp. MR-4 hypothetical protein YP_735058.1 3498728 D 60480 CDS YP_735059.1 113971266 4253502 complement(3499515..3500813) 1 NC_008321.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3503 glucose/galactose transporter; glucose/galactose transporter 3500813 4253502 Shewmr4_2931 Shewanella sp. MR-4 glucose/galactose transporter YP_735059.1 3499515 R 60480 CDS YP_735060.1 113971267 4253503 complement(3501153..3502340) 1 NC_008321.1 KEGG: son:SO3504 hypothetical protein; hypothetical protein 3502340 4253503 Shewmr4_2932 Shewanella sp. MR-4 hypothetical protein YP_735060.1 3501153 R 60480 CDS YP_735061.1 113971268 4253504 complement(3502479..3503615) 1 NC_008321.1 KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine 6-phosphate deacetylase 3503615 4253504 Shewmr4_2933 Shewanella sp. MR-4 N-acetylglucosamine 6-phosphate deacetylase YP_735061.1 3502479 R 60480 CDS YP_735062.1 113971269 4253505 complement(3503659..3504657) 1 NC_008321.1 PFAM: sugar isomerase (SIS); KEGG: son:SO3506 glucosamine-6-phosphate isomerase; glutamine--fructose-6-phosphate transaminase (isomerizing) 3504657 4253505 Shewmr4_2934 Shewanella sp. MR-4 glutamine--fructose-6-phosphate transaminase (isomerizing) YP_735062.1 3503659 R 60480 CDS YP_735063.1 113971270 4253506 complement(3504716..3505624) 1 NC_008321.1 PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: son:SO3507 hypothetical protein; ATPase, BadF/BadG/BcrA/BcrD type 3505624 4253506 Shewmr4_2935 Shewanella sp. MR-4 ATPase, BadF/BadG/BcrA/BcrD type YP_735063.1 3504716 R 60480 CDS YP_735064.1 113971271 4253507 complement(3505848..3508538) 1 NC_008321.1 PFAM: glycoside hydrolase, family 20; Carbohydrate-binding, chitobiase/hexosaminidase-type domain protein; glycoside hydrolase, family 20 domain protein; KEGG: son:SO3509 beta-hexosaminidase b precursor; Beta-N-acetylhexosaminidase 3508538 4253507 Shewmr4_2936 Shewanella sp. MR-4 Beta-N-acetylhexosaminidase YP_735064.1 3505848 R 60480 CDS YP_735065.1 113971272 4253508 complement(3508567..3510054) 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: sde:Sde_0391 putative methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3510054 4253508 Shewmr4_2937 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_735065.1 3508567 R 60480 CDS YP_735066.1 113971273 4253509 complement(3510054..3511040) 1 NC_008321.1 KEGG: sde:Sde_2658 type IV pilus assembly protein PilM; hypothetical protein 3511040 4253509 Shewmr4_2938 Shewanella sp. MR-4 hypothetical protein YP_735066.1 3510054 R 60480 CDS YP_735067.1 113971274 4253510 3511531..3512433 1 NC_008321.1 PFAM: protein of unknown function DUF81; KEGG: cps:CPS_1011 hypothetical protein; hypothetical protein 3512433 4253510 Shewmr4_2939 Shewanella sp. MR-4 hypothetical protein YP_735067.1 3511531 D 60480 CDS YP_735068.1 113971275 4253511 complement(3512471..3513130) 1 NC_008321.1 hypothetical protein 3513130 4253511 Shewmr4_2940 Shewanella sp. MR-4 hypothetical protein YP_735068.1 3512471 R 60480 CDS YP_735069.1 113971276 4253512 complement(3513142..3514677) 1 NC_008321.1 PFAM: tryptophan halogenase; KEGG: sdn:Sden_2707 tryptophan halogenase; tryptophan halogenase 3514677 4253512 Shewmr4_2941 Shewanella sp. MR-4 tryptophan halogenase YP_735069.1 3513142 R 60480 CDS YP_735070.1 113971277 4253513 complement(3514740..3517403) 1 NC_008321.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sdn:Sden_2708 TonB-dependent receptor; TonB-dependent receptor 3517403 4253513 Shewmr4_2942 Shewanella sp. MR-4 TonB-dependent receptor YP_735070.1 3514740 R 60480 CDS YP_735071.1 113971278 4253514 3517830..3518846 1 NC_008321.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO3516 transcriptional regulator, LacI family; LacI family transcription regulator 3518846 4253514 Shewmr4_2943 Shewanella sp. MR-4 LacI family transcription regulator YP_735071.1 3517830 D 60480 CDS YP_735072.1 113971279 4253515 complement(3518907..3520196) 1 NC_008321.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO3517 NADH dehydrogenase; NADH dehydrogenase 3520196 4253515 Shewmr4_2944 Shewanella sp. MR-4 NADH dehydrogenase YP_735072.1 3518907 R 60480 CDS YP_735073.1 113971280 4253516 complement(3520389..3520727) 1 NC_008321.1 PFAM: nitrogen regulatory protein P-II; KEGG: son:SO3519 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II 3520727 4253516 Shewmr4_2945 Shewanella sp. MR-4 nitrogen regulatory protein P-II YP_735073.1 3520389 R 60480 CDS YP_735074.1 113971281 4253517 3520965..3521477 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: son:SO3520 type IV pilus biogenesis protein, putative; methylation site containing protein 3521477 4253517 Shewmr4_2946 Shewanella sp. MR-4 methylation site containing protein YP_735074.1 3520965 D 60480 CDS YP_735075.1 113971282 4253518 3521632..3522114 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: son:SO3521 type IV pilus biogenesis protein, putative; methylation site containing protein 3522114 4253518 Shewmr4_2947 Shewanella sp. MR-4 methylation site containing protein YP_735075.1 3521632 D 60480 CDS YP_735076.1 113971283 4253519 complement(3522143..3522442) 1 NC_008321.1 KEGG: son:SO3523 hypothetical protein; hypothetical protein 3522442 4253519 Shewmr4_2948 Shewanella sp. MR-4 hypothetical protein YP_735076.1 3522143 R 60480 CDS YP_735077.1 113971284 4253520 complement(3522439..3522882) 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: son:SO3524 type IV pilus biogenesis protein PilE; methylation site containing protein 3522882 4253520 Shewmr4_2949 Shewanella sp. MR-4 methylation site containing protein YP_735077.1 3522439 R 60480 CDS YP_735078.1 113971285 4253521 complement(3522891..3526424) 1 NC_008321.1 KEGG: son:SO3525 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein 3526424 4253521 Shewmr4_2950 Shewanella sp. MR-4 type IV pilin biogenesis protein YP_735078.1 3522891 R 60480 CDS YP_735079.1 113971286 4253522 complement(3526428..3526880) 1 NC_008321.1 KEGG: son:SO3526 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX 3526880 4253522 Shewmr4_2951 Shewanella sp. MR-4 type IV pilus assembly protein PilX YP_735079.1 3526428 R 60480 CDS YP_735080.1 113971287 4253523 complement(3526893..3527906) 1 NC_008321.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO3527 type IV pilus assembly protein PilW; prepilin-type cleavage/methylation-like protein 3527906 4253523 Shewmr4_2952 Shewanella sp. MR-4 prepilin-type cleavage/methylation-like protein YP_735080.1 3526893 R 60480 CDS YP_735081.1 113971288 4253524 complement(3527907..3528473) 1 NC_008321.1 TIGRFAM: type IV pilus modification protein PilV; PFAM: methylation site containing protein; KEGG: son:SO3528 type IV pilus assembly protein PilV; type IV pilus modification protein PilV 3528473 4253524 Shewmr4_2953 Shewanella sp. MR-4 type IV pilus modification protein PilV YP_735081.1 3527907 R 60480 CDS YP_735082.1 113971289 4253525 complement(3528689..3529645) 1 NC_008321.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3529645 ispH 4253525 ispH Shewanella sp. MR-4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_735082.1 3528689 R 60480 CDS YP_735083.1 113971290 4253526 complement(3529647..3530069) 1 NC_008321.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3530 peptidyl-prolyl cis-trans isomerase FkbP; peptidylprolyl isomerase, FKBP-type 3530069 4253526 Shewmr4_2955 Shewanella sp. MR-4 peptidylprolyl isomerase, FKBP-type YP_735083.1 3529647 R 60480 CDS YP_735084.1 113971291 4253527 complement(3530069..3530581) 1 NC_008321.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 3530581 lspA 4253527 lspA Shewanella sp. MR-4 lipoprotein signal peptidase YP_735084.1 3530069 R 60480 CDS YP_735085.1 113971292 4253528 complement(3530591..3533413) 1 NC_008321.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 3533413 ileS 4253528 ileS Shewanella sp. MR-4 isoleucyl-tRNA synthetase YP_735085.1 3530591 R 60480 CDS YP_735086.1 113971293 4253529 complement(3533446..3534381) 1 NC_008321.1 KEGG: son:SO3533 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; riboflavin kinase / FMN adenylyltransferase 3534381 4253529 Shewmr4_2958 Shewanella sp. MR-4 riboflavin kinase / FMN adenylyltransferase YP_735086.1 3533446 R 60480 CDS YP_735087.1 113971294 4253530 complement(3534447..3536006) 1 NC_008321.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: son:SO3534 MviN protein; integral membrane protein MviN 3536006 4253530 Shewmr4_2959 Shewanella sp. MR-4 integral membrane protein MviN YP_735087.1 3534447 R 60480 CDS YP_735088.1 113971295 4253531 3536259..3536525 1 NC_008321.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3536525 rpsT 4253531 rpsT Shewanella sp. MR-4 30S ribosomal protein S20 YP_735088.1 3536259 D 60480 CDS YP_735089.1 113971296 4253532 complement(3536586..3536882) 1 NC_008321.1 PFAM: regulatory protein, ArsR; KEGG: son:SO3538 transcriptional regulator HlyU; ArsR family transcriptional regulator 3536882 4253532 Shewmr4_2961 Shewanella sp. MR-4 ArsR family transcriptional regulator YP_735089.1 3536586 R 60480 CDS YP_735090.1 113971297 4253533 3537018..3538424 1 NC_008321.1 PFAM: peptidase M20; peptidase M28; KEGG: son:SO3539 peptidase, M28D family; peptidase M28 3538424 4253533 Shewmr4_2962 Shewanella sp. MR-4 peptidase M28 YP_735090.1 3537018 D 60480 CDS YP_735091.1 113971298 4253534 complement(3538496..3539269) 1 NC_008321.1 PFAM: protein of unknown function DUF328; KEGG: son:SO3540 hypothetical protein; hypothetical protein 3539269 4253534 Shewmr4_2963 Shewanella sp. MR-4 hypothetical protein YP_735091.1 3538496 R 60480 CDS YP_735092.1 113971299 4253535 complement(3539378..3540844) 1 NC_008321.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO3541 sodium:alanine symporter family protein; amino acid carrier protein 3540844 4253535 Shewmr4_2964 Shewanella sp. MR-4 amino acid carrier protein YP_735092.1 3539378 R 60480 CDS YP_735093.1 113971300 4253536 3541276..3543642 1 NC_008321.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: son:SO3542 putative phosphoketolase; putative phosphoketolase 3543642 4253536 Shewmr4_2965 Shewanella sp. MR-4 putative phosphoketolase YP_735093.1 3541276 D 60480 CDS YP_735094.1 113971301 4253537 3543881..3544999 1 NC_008321.1 PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: son:SO3545 OmpA family protein; OmpA/MotB domain-containing protein 3544999 4253537 Shewmr4_2966 Shewanella sp. MR-4 OmpA/MotB domain-containing protein YP_735094.1 3543881 D 60480 CDS YP_735095.1 113971302 4253538 3545248..3546204 1 NC_008321.1 KEGG: son:SO3546 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 3546204 4253538 Shewmr4_2967 Shewanella sp. MR-4 transaldolase B YP_735095.1 3545248 D 60480 CDS YP_735096.1 113971303 4253539 3546225..3547862 1 NC_008321.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 3547862 pgi 4253539 pgi Shewanella sp. MR-4 glucose-6-phosphate isomerase YP_735096.1 3546225 D 60480 CDS YP_735097.1 113971304 4253540 3548079..3548264 1 NC_008321.1 KEGG: son:SO3548 hypothetical protein; hypothetical protein 3548264 4253540 Shewmr4_2969 Shewanella sp. MR-4 hypothetical protein YP_735097.1 3548079 D 60480 CDS YP_735098.1 113971305 4253541 complement(3548332..3548868) 1 NC_008321.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: son:SO3549 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 3548868 4253541 Shewmr4_2970 Shewanella sp. MR-4 hemerythrin HHE cation binding domain-containing protein YP_735098.1 3548332 R 60480 CDS YP_735099.1 113971306 4253542 complement(3549090..3549812) 1 NC_008321.1 KEGG: son:SO3550 hypothetical protein; hypothetical protein 3549812 4253542 Shewmr4_2971 Shewanella sp. MR-4 hypothetical protein YP_735099.1 3549090 R 60480 CDS YP_735100.1 113971307 4253543 complement(3549805..3550458) 1 NC_008321.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO3551 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3550458 4253543 Shewmr4_2972 Shewanella sp. MR-4 ECF subfamily RNA polymerase sigma-24 factor YP_735100.1 3549805 R 60480 CDS YP_735101.1 113971308 4253544 complement(3550455..3552329) 1 NC_008321.1 PFAM: von Willebrand factor, type A; KEGG: son:SO3552 von Willebrand factor type A domain protein; von Willebrand factor, type A 3552329 4253544 Shewmr4_2973 Shewanella sp. MR-4 von Willebrand factor, type A YP_735101.1 3550455 R 60480 CDS YP_735102.1 113971309 4253545 3552543..3554315 1 NC_008321.1 putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM 3554315 4253545 Shewmr4_2974 Shewanella sp. MR-4 putative sulfate transporter YchM YP_735102.1 3552543 D 60480 CDS YP_735103.1 113971310 4253546 3554571..3555062 1 NC_008321.1 KEGG: son:SO3554 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit 3555062 4253546 Shewmr4_2975 Shewanella sp. MR-4 phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_735103.1 3554571 D 60480 CDS YP_735104.1 113971311 4253547 3555062..3556159 1 NC_008321.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 3556159 4253547 Shewmr4_2976 Shewanella sp. MR-4 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_735104.1 3555062 D 60480 CDS YP_735105.1 113971312 4253548 3556314..3557576 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: son:SO3556 cyclic nucleotide phosphodiesterase, putative; diguanylate cyclase with GAF sensor 3557576 4253548 Shewmr4_2977 Shewanella sp. MR-4 diguanylate cyclase with GAF sensor YP_735105.1 3556314 D 60480 CDS YP_735106.1 113971313 4253549 complement(3557652..3558269) 1 NC_008321.1 KEGG: son:SO3557 hypothetical protein; hypothetical protein 3558269 4253549 Shewmr4_2978 Shewanella sp. MR-4 hypothetical protein YP_735106.1 3557652 R 60480 CDS YP_735107.1 113971314 4253550 complement(3558426..3558887) 1 NC_008321.1 KEGG: son:SO3558 hypothetical protein; hypothetical protein 3558887 4253550 Shewmr4_2979 Shewanella sp. MR-4 hypothetical protein YP_735107.1 3558426 R 60480 CDS YP_735108.1 113971315 4253551 complement(3558887..3560536) 1 NC_008321.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 3560536 4253551 Shewmr4_2980 Shewanella sp. MR-4 glutamate--cysteine ligase YP_735108.1 3558887 R 60480 CDS YP_735109.1 113971316 4253552 complement(3560720..3563569) 1 NC_008321.1 PFAM: peptidase M16 domain protein; KEGG: son:SO3560 peptidase, M16 family; peptidase M16 domain-containing protein 3563569 4253552 Shewmr4_2981 Shewanella sp. MR-4 peptidase M16 domain-containing protein YP_735109.1 3560720 R 60480 CDS YP_735110.1 113971317 4253553 complement(3563711..3564136) 1 NC_008321.1 KEGG: son:SO3561 hypothetical protein; hypothetical protein 3564136 4253553 Shewmr4_2982 Shewanella sp. MR-4 hypothetical protein YP_735110.1 3563711 R 60480 CDS YP_735111.1 113971318 4253554 3564424..3565677 1 NC_008321.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO3562 proton/glutamate symporter, putative; sodium:dicarboxylate symporter 3565677 4253554 Shewmr4_2983 Shewanella sp. MR-4 sodium:dicarboxylate symporter YP_735111.1 3564424 D 60480 CDS YP_735112.1 113971319 4253555 3565836..3566003 1 NC_008321.1 KEGG: pha:PSHAa2250 hypothetical protein; hypothetical protein 3566003 4253555 Shewmr4_2984 Shewanella sp. MR-4 hypothetical protein YP_735112.1 3565836 D 60480 CDS YP_735113.1 113971320 4253556 complement(3566044..3567174) 1 NC_008321.1 KEGG: vvy:VV2798 oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; sodium ion-translocating decarboxylase subunit beta 3567174 4253556 Shewmr4_2985 Shewanella sp. MR-4 sodium ion-translocating decarboxylase subunit beta YP_735113.1 3566044 R 60480 CDS YP_735114.1 113971321 4253557 complement(3567183..3569018) 1 NC_008321.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 3569018 4253557 Shewmr4_2986 Shewanella sp. MR-4 oxaloacetate decarboxylase YP_735114.1 3567183 R 60480 CDS YP_735115.1 113971322 4253558 complement(3569030..3569317) 1 NC_008321.1 TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: vvy:VV2800 oxaloacetate decarboxylase, gamma subunit; sodium pump decarboxylases subunit gamma 3569317 4253558 Shewmr4_2987 Shewanella sp. MR-4 sodium pump decarboxylases subunit gamma YP_735115.1 3569030 R 60480 CDS YP_735116.1 113971323 4253559 complement(3575126..3575224) 1 NC_008321.1 KEGG: son:SO0043 hypothetical protein; hypothetical protein 3575224 4253559 Shewmr4_2988 Shewanella sp. MR-4 hypothetical protein YP_735116.1 3575126 R 60480 CDS YP_735117.1 113971324 4253560 complement(3575697..3576515) 1 NC_008321.1 KEGG: son:SO3575 CDP-diacylglycerol--serine O-phosphatidyltransferase, putative; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 3576515 4253560 Shewmr4_2989 Shewanella sp. MR-4 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_735117.1 3575697 R 60480 CDS YP_735118.1 113971325 4253561 3576607..3577071 1 NC_008321.1 KEGG: son:SO3576 hypothetical protein; hypothetical protein 3577071 4253561 Shewmr4_2990 Shewanella sp. MR-4 hypothetical protein YP_735118.1 3576607 D 60480 CDS YP_735119.1 113971326 4253562 complement(3577254..3579827) 1 NC_008321.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: son:SO3577 clpB protein; ATPase 3579827 4253562 Shewmr4_2991 Shewanella sp. MR-4 ATPase YP_735119.1 3577254 R 60480 CDS YP_735120.1 113971327 4253563 complement(3579946..3580734) 1 NC_008321.1 PFAM: protein of unknown function DUF152; KEGG: son:SO3578 conserved hypothetical protein TIGR00726; hypothetical protein 3580734 4253563 Shewmr4_2992 Shewanella sp. MR-4 hypothetical protein YP_735120.1 3579946 R 60480 CDS YP_735121.1 113971328 4253564 complement(3580738..3581709) 1 NC_008321.1 KEGG: sdn:Sden_2863 pseudouridine synthase, RluD; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; ribosomal large subunit pseudouridine synthase D 3581709 4253564 Shewmr4_2993 Shewanella sp. MR-4 ribosomal large subunit pseudouridine synthase D YP_735121.1 3580738 R 60480 CDS YP_735122.1 113971329 4253565 3581745..3582593 1 NC_008321.1 KEGG: son:SO3580 putative lipoprotein; putative lipoprotein 3582593 4253565 Shewmr4_2994 Shewanella sp. MR-4 putative lipoprotein YP_735122.1 3581745 D 60480 CDS YP_735123.1 113971330 4253566 3583325..3584950 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3582 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3584950 4253566 Shewmr4_2995 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_735123.1 3583325 D 60480 CDS YP_735124.1 113971331 4253567 3585126..3586319 1 NC_008321.1 PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: hch:HCH_01369 flavodoxin reductases (ferredoxin-NADPH reductases) family 1; globin 3586319 4253567 Shewmr4_2996 Shewanella sp. MR-4 globin YP_735124.1 3585126 D 60480 CDS YP_735125.1 113971332 4253568 complement(3586412..3587137) 1 NC_008321.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sdn:Sden_2876 pseudouridine synthase, Rsu; pseudouridine synthase, Rsu 3587137 4253568 Shewmr4_2997 Shewanella sp. MR-4 pseudouridine synthase, Rsu YP_735125.1 3586412 R 60480 CDS YP_735126.1 113971333 4253569 complement(3587152..3587772) 1 NC_008321.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: son:SO3584 hypothetical protein; transcriptional regulator 3587772 4253569 Shewmr4_2998 Shewanella sp. MR-4 transcriptional regulator YP_735126.1 3587152 R 60480 CDS YP_735127.1 113971334 4253570 3587919..3588533 1 NC_008321.1 PFAM: NADPH-dependent FMN reductase; KEGG: son:SO3585 azoreductase, putative; NADPH-dependent FMN reductase 3588533 4253570 Shewmr4_2999 Shewanella sp. MR-4 NADPH-dependent FMN reductase YP_735127.1 3587919 D 60480 CDS YP_735128.1 113971335 4253571 3588584..3589000 1 NC_008321.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO3586 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 3589000 4253571 Shewmr4_3000 Shewanella sp. MR-4 glyoxalase/bleomycin resistance protein/dioxygenase YP_735128.1 3588584 D 60480 CDS YP_735129.1 113971336 4253572 3589145..3589615 1 NC_008321.1 KEGG: son:SO3587 hypothetical protein; hypothetical protein 3589615 4253572 Shewmr4_3001 Shewanella sp. MR-4 hypothetical protein YP_735129.1 3589145 D 60480 CDS YP_735130.1 113971337 4253573 complement(3589694..3590263) 1 NC_008321.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: son:SO3588 gpr1/fun34/YaaH family protein; GPR1/FUN34/yaaH family protein 3590263 4253573 Shewmr4_3002 Shewanella sp. MR-4 GPR1/FUN34/yaaH family protein YP_735130.1 3589694 R 60480 CDS YP_735131.1 113971338 4253574 3591002..3591238 1 NC_008321.1 KEGG: son:SO3591 hypothetical protein; hypothetical protein 3591238 4253574 Shewmr4_3003 Shewanella sp. MR-4 hypothetical protein YP_735131.1 3591002 D 60480 CDS YP_735132.1 113971339 4253575 3591592..3592455 1 NC_008321.1 PFAM: MltA-interacting MipA family protein; KEGG: son:SO3592 putative outer membrane protein; MltA-interacting MipA family protein 3592455 4253575 Shewmr4_3004 Shewanella sp. MR-4 MltA-interacting MipA family protein YP_735132.1 3591592 D 60480 CDS YP_735133.1 113971340 4253576 3592482..3592874 1 NC_008321.1 KEGG: son:SO3593 hypothetical protein; hypothetical protein 3592874 4253576 Shewmr4_3005 Shewanella sp. MR-4 hypothetical protein YP_735133.1 3592482 D 60480 CDS YP_735134.1 113971341 4253577 3592874..3593587 1 NC_008321.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO3594 transcriptional regulatory protein RstA, putative; two component transcriptional regulator 3593587 4253577 Shewmr4_3006 Shewanella sp. MR-4 two component transcriptional regulator YP_735134.1 3592874 D 60480 CDS YP_735135.1 113971342 4253578 3593596..3594864 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3595 sensor protein RstB, putative; periplasmic sensor signal transduction histidine kinase 3594864 4253578 Shewmr4_3007 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_735135.1 3593596 D 60480 CDS YP_735136.1 113971343 4253579 complement(3594893..3595201) 1 NC_008321.1 PFAM: protein of unknown function DUF1289; KEGG: son:SO3596 hypothetical protein; hypothetical protein 3595201 4253579 Shewmr4_3008 Shewanella sp. MR-4 hypothetical protein YP_735136.1 3594893 R 60480 CDS YP_735137.1 113971344 4253580 3595360..3595896 1 NC_008321.1 KEGG: son:SO3597 hypothetical protein; hypothetical protein 3595896 4253580 Shewmr4_3009 Shewanella sp. MR-4 hypothetical protein YP_735137.1 3595360 D 60480 CDS YP_735138.1 113971345 4253581 complement(3596097..3596534) 1 NC_008321.1 PFAM: transposase IS200-family protein; KEGG: vch:VCA0275 IS1004 transposase; transposase IS200-family protein 3596534 4253581 Shewmr4_3010 Shewanella sp. MR-4 transposase IS200-family protein YP_735138.1 3596097 R 60480 CDS YP_735139.1 113971346 4253582 complement(3596727..3597605) 1 NC_008321.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 3597605 cysM 4253582 cysM Shewanella sp. MR-4 cysteine synthase B YP_735139.1 3596727 R 60480 CDS YP_735140.1 113971347 4253583 3597813..3598820 1 NC_008321.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO3599 sulfate ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter periplasmic sulfate-binding protein 3598820 4253583 Shewmr4_3012 Shewanella sp. MR-4 sulfate ABC transporter periplasmic sulfate-binding protein YP_735140.1 3597813 D 60480 CDS YP_735141.1 113971348 4253584 3598993..3599838 1 NC_008321.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO3600 sulfate ABC transporter, permease protein; sulfate ABC transporter inner membrane subunit CysT 3599838 4253584 Shewmr4_3013 Shewanella sp. MR-4 sulfate ABC transporter inner membrane subunit CysT YP_735141.1 3598993 D 60480 CDS YP_735142.1 113971349 4253585 3599848..3600717 1 NC_008321.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO3601 sulfate ABC transporter, permease protein; sulfate ABC transporter inner membrane subunit CysW 3600717 4253585 Shewmr4_3014 Shewanella sp. MR-4 sulfate ABC transporter inner membrane subunit CysW YP_735142.1 3599848 D 60480 CDS YP_735143.1 113971350 4253586 3600714..3601844 1 NC_008321.1 KEGG: son:SO3602 sulfate ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase subunit 3601844 4253586 Shewmr4_3015 Shewanella sp. MR-4 sulfate ABC transporter ATPase subunit YP_735143.1 3600714 D 60480 CDS YP_735144.1 113971351 4253587 complement(3601968..3603113) 1 NC_008321.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO3603 secretion protein, HlyD family; secretion protein HlyD family protein 3603113 4253587 Shewmr4_3016 Shewanella sp. MR-4 secretion protein HlyD family protein YP_735144.1 3601968 R 60480 CDS YP_735145.1 113971352 4253588 complement(3603115..3603531) 1 NC_008321.1 KEGG: vch:VCA0048 hypothetical protein; hypothetical protein 3603531 4253588 Shewmr4_3017 Shewanella sp. MR-4 hypothetical protein YP_735145.1 3603115 R 60480 CDS YP_735146.1 113971353 4253589 complement(3604539..3605021) 1 NC_008321.1 hypothetical protein 3605021 4253589 Shewmr4_3018 Shewanella sp. MR-4 hypothetical protein YP_735146.1 3604539 R 60480 CDS YP_735147.1 113971354 4253590 complement(3605219..3606784) 1 NC_008321.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: son:SO3611 ATPase, AAA family; ATPase central domain-containing protein 3606784 4253590 Shewmr4_3019 Shewanella sp. MR-4 ATPase central domain-containing protein YP_735147.1 3605219 R 60480 CDS YP_735148.1 113971355 4253591 3606924..3608099 1 NC_008321.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 3608099 purT 4253591 purT Shewanella sp. MR-4 phosphoribosylglycinamide formyltransferase 2 YP_735148.1 3606924 D 60480 CDS YP_735149.1 113971356 4253592 3608324..3609832 1 NC_008321.1 KEGG: son:SO3614 hypothetical protein; hypothetical protein 3609832 4253592 Shewmr4_3021 Shewanella sp. MR-4 hypothetical protein YP_735149.1 3608324 D 60480 CDS YP_735150.1 113971357 4253593 3609822..3612101 1 NC_008321.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO3615 hypothetical protein; TPR repeat-containing protein 3612101 4253593 Shewmr4_3022 Shewanella sp. MR-4 TPR repeat-containing protein YP_735150.1 3609822 D 60480 CDS YP_735151.1 113971358 4253594 3613176..3613880 1 NC_008321.1 hypothetical protein 3613880 4253594 Shewmr4_3023 Shewanella sp. MR-4 hypothetical protein YP_735151.1 3613176 D 60480 CDS YP_735152.1 113971359 4253595 3614330..3615343 1 NC_008321.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3360 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 3615343 4253595 Shewmr4_3024 Shewanella sp. MR-4 transposase IS116/IS110/IS902 family protein YP_735152.1 3614330 D 60480 CDS YP_735153.1 113971360 4253596 complement(3615803..3617959) 1 NC_008321.1 KEGG: son:SO1075 hypothetical protein; dipeptidyl-peptidase 7 3617959 4253596 Shewmr4_3025 Shewanella sp. MR-4 dipeptidyl-peptidase 7 YP_735153.1 3615803 R 60480 CDS YP_735154.1 113971361 4253597 complement(3618198..3619373) 1 NC_008321.1 PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: son:SO1074 tyrosine-specific transport protein, putative; aromatic amino acid permease 3619373 4253597 Shewmr4_3026 Shewanella sp. MR-4 aromatic amino acid permease YP_735154.1 3618198 R 60480 CDS YP_735155.1 113971362 4253598 complement(3619931..3621406) 1 NC_008321.1 GbpA; plays a role mediating bacterial attachment and colonization of zooplankton and/or intestinal epithelium; in Vibrio cholerae this protein probably binds directly N-acetylglucosamine residues in chitin, glycoproteins and lipids on intestinal epithelial cells; N-acetylglucosamine-binding protein A 3621406 4253598 Shewmr4_3027 Shewanella sp. MR-4 N-acetylglucosamine-binding protein A YP_735155.1 3619931 R 60480 CDS YP_735156.1 113971363 4253599 3621991..3622587 1 NC_008321.1 PFAM: protein of unknown function UPF0016; KEGG: son:SO1071 hypothetical protein; hypothetical protein 3622587 4253599 Shewmr4_3028 Shewanella sp. MR-4 hypothetical protein YP_735156.1 3621991 D 60480 CDS YP_735157.1 113971364 4253600 complement(3622658..3624118) 1 NC_008321.1 PFAM: Catalase domain protein; KEGG: son:SO1070 catalase; catalase 3624118 4253600 Shewmr4_3029 Shewanella sp. MR-4 catalase YP_735157.1 3622658 R 60480 CDS YP_735158.1 113971365 4253601 complement(3624478..3624723) 1 NC_008321.1 KEGG: son:SO1069 hypothetical protein; hypothetical protein 3624723 4253601 Shewmr4_3030 Shewanella sp. MR-4 hypothetical protein YP_735158.1 3624478 R 60480 CDS YP_735159.1 113971366 4253602 complement(3624777..3625214) 1 NC_008321.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO1068 hypothetical protein; hypothetical protein 3625214 4253602 Shewmr4_3031 Shewanella sp. MR-4 hypothetical protein YP_735159.1 3624777 R 60480 CDS YP_735160.1 113971367 4253603 complement(3625323..3625778) 1 NC_008321.1 KEGG: son:SO1067 hypothetical protein; hypothetical protein 3625778 4253603 Shewmr4_3032 Shewanella sp. MR-4 hypothetical protein YP_735160.1 3625323 R 60480 CDS YP_735161.1 113971368 4253604 complement(3625905..3628517) 1 NC_008321.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: son:SO1066 extracellular nuclease; endonuclease/exonuclease/phosphatase 3628517 4253604 Shewmr4_3033 Shewanella sp. MR-4 endonuclease/exonuclease/phosphatase YP_735161.1 3625905 R 60480 CDS YP_735162.1 113971369 4253605 complement(3629144..3629917) 1 NC_008321.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1065 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA; peptidylprolyl isomerase, FKBP-type 3629917 4253605 Shewmr4_3034 Shewanella sp. MR-4 peptidylprolyl isomerase, FKBP-type YP_735162.1 3629144 R 60480 CDS YP_735163.1 113971370 4253606 3630072..3631022 1 NC_008321.1 PFAM: WD-40 repeat protein; KEGG: son:SO1064 hypothetical WD domain protein; WD-40 repeat-containing protein 3631022 4253606 Shewmr4_3035 Shewanella sp. MR-4 WD-40 repeat-containing protein YP_735163.1 3630072 D 60480 CDS YP_735164.1 113971371 4253607 3631032..3631244 1 NC_008321.1 PFAM: SlyX family protein; KEGG: son:SO1063 SlyX protein; SlyX family protein 3631244 4253607 Shewmr4_3036 Shewanella sp. MR-4 SlyX family protein YP_735164.1 3631032 D 60480 CDS YP_735165.1 113971372 4253608 3631298..3631843 1 NC_008321.1 KEGG: son:SO1062 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 3631843 4253608 Shewmr4_3037 Shewanella sp. MR-4 peptide deformylase YP_735165.1 3631298 D 60480 CDS YP_735166.1 113971373 4253609 3631840..3633240 1 NC_008321.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO1061 TPR domain protein; TPR repeat-containing protein 3633240 4253609 Shewmr4_3038 Shewanella sp. MR-4 TPR repeat-containing protein YP_735166.1 3631840 D 60480 CDS YP_735167.1 113971374 4253610 3633296..3633901 1 NC_008321.1 KEGG: son:SO1060 hypothetical protein; hypothetical protein 3633901 4253610 Shewmr4_3039 Shewanella sp. MR-4 hypothetical protein YP_735167.1 3633296 D 60480 CDS YP_735168.1 113971375 4253611 3634143..3636776 1 NC_008321.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1059 aminopeptidase N; aminopeptidase N 3636776 4253611 Shewmr4_3040 Shewanella sp. MR-4 aminopeptidase N YP_735168.1 3634143 D 60480 CDS YP_735169.1 113971376 4253612 complement(3636834..3638390) 1 NC_008321.1 PFAM: EAL domain protein; KEGG: vpa:VP1768 hypothetical protein; EAL domain-containing protein 3638390 4253612 Shewmr4_3041 Shewanella sp. MR-4 EAL domain-containing protein YP_735169.1 3636834 R 60480 CDS YP_735170.1 113971377 4253613 3638584..3640476 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: son:SO1056 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3640476 4253613 Shewmr4_3042 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_735170.1 3638584 D 60480 CDS YP_735171.1 113971378 4253614 complement(3640579..3642021) 1 NC_008321.1 KEGG: son:SO1055 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; diguanylate cyclase with PAS/PAC sensor 3642021 4253614 Shewmr4_3043 Shewanella sp. MR-4 diguanylate cyclase with PAS/PAC sensor YP_735171.1 3640579 R 60480 CDS YP_735172.1 113971379 4253615 3642300..3643253 1 NC_008321.1 PFAM: protein of unknown function DUF72; KEGG: son:SO1053.2 hypothetical protein; hypothetical protein 3643253 4253615 Shewmr4_3044 Shewanella sp. MR-4 hypothetical protein YP_735172.1 3642300 D 60480 CDS YP_735173.1 113971380 4253616 complement(3643266..3644735) 1 NC_008321.1 PFAM: phosphate transporter; KEGG: son:SO1052 low-affinity inorganic phosphate transporter; phosphate transporter 3644735 4253616 Shewmr4_3045 Shewanella sp. MR-4 phosphate transporter YP_735173.1 3643266 R 60480 CDS YP_735174.1 113971381 4253617 complement(3644930..3646744) 1 NC_008321.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 3646744 mdoD 4253617 mdoD Shewanella sp. MR-4 glucan biosynthesis protein D YP_735174.1 3644930 R 60480 CDS YP_735175.1 113971382 4253618 complement(3646863..3648338) 1 NC_008321.1 PFAM: carbon starvation protein CstA; KEGG: sdn:Sden_0907 carbon starvation protein CstA; carbon starvation protein CstA 3648338 4253618 Shewmr4_3047 Shewanella sp. MR-4 carbon starvation protein CstA YP_735175.1 3646863 R 60480 CDS YP_735176.1 113971383 4253619 complement(3648566..3649042) 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1049 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 3649042 4253619 Shewmr4_3048 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_735176.1 3648566 R 60480 CDS YP_735177.1 113971384 4253620 complement(3649226..3649960) 1 NC_008321.1 PFAM: LrgB family protein; KEGG: son:SO1048 hypothetical protein; LrgB family protein 3649960 4253620 Shewmr4_3049 Shewanella sp. MR-4 LrgB family protein YP_735177.1 3649226 R 60480 CDS YP_735178.1 113971385 4253621 complement(3649960..3650394) 1 NC_008321.1 PFAM: LrgA family protein; KEGG: son:SO1047 holin-like protein; LrgA family protein 3650394 4253621 Shewmr4_3050 Shewanella sp. MR-4 LrgA family protein YP_735178.1 3649960 R 60480 CDS YP_735179.1 113971386 4253622 3650515..3651405 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1046 transcriptional regulator, LysR family; LysR family transcriptional regulator 3651405 4253622 Shewmr4_3051 Shewanella sp. MR-4 LysR family transcriptional regulator YP_735179.1 3650515 D 60480 CDS YP_735180.1 113971387 4253623 complement(3651410..3652234) 1 NC_008321.1 KEGG: son:SO1045 hypothetical protein; hypothetical protein 3652234 4253623 Shewmr4_3052 Shewanella sp. MR-4 hypothetical protein YP_735180.1 3651410 R 60480 CDS YP_735181.1 113971388 4253624 3652609..3653343 1 NC_008321.1 PFAM: extracellular solute-binding protein, family 3; KEGG: son:SO1044 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 3653343 4253624 Shewmr4_3053 Shewanella sp. MR-4 extracellular solute-binding protein YP_735181.1 3652609 D 60480 CDS YP_735182.1 113971389 4253625 3653349..3654029 1 NC_008321.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1043 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 3654029 4253625 Shewmr4_3054 Shewanella sp. MR-4 polar amino acid ABC transporter inner membrane subunit YP_735182.1 3653349 D 60480 CDS YP_735183.1 113971390 4253626 3654022..3654747 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1042 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 3654747 4253626 Shewmr4_3055 Shewanella sp. MR-4 ABC transporter-like protein YP_735183.1 3654022 D 60480 CDS YP_735184.1 113971391 4253627 complement(3654857..3655261) 1 NC_008321.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: bcn:Bcen_0332 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating, GFA 3655261 4253627 Shewmr4_3056 Shewanella sp. MR-4 glutathione-dependent formaldehyde-activating, GFA YP_735184.1 3654857 R 60480 CDS YP_735185.1 113971392 4253628 complement(3655419..3655910) 1 NC_008321.1 hypothetical protein 3655910 4253628 Shewmr4_3057 Shewanella sp. MR-4 hypothetical protein YP_735185.1 3655419 R 60480 CDS YP_735186.1 113971393 4253629 3656107..3657048 1 NC_008321.1 KEGG: eca:ECA2891 hypothetical protein; nucleotide-binding protein 3657048 4253629 Shewmr4_3058 Shewanella sp. MR-4 nucleotide-binding protein YP_735186.1 3656107 D 60480 CDS YP_735187.1 113971394 4253630 complement(3657393..3657854) 1 NC_008321.1 KEGG: vvy:VVA1480 hypothetical protein; hypothetical protein 3657854 4253630 Shewmr4_3059 Shewanella sp. MR-4 hypothetical protein YP_735187.1 3657393 R 60480 CDS YP_735188.1 113971395 4253631 complement(3657863..3659818) 1 NC_008321.1 PFAM: beta-lactamase domain protein; KEGG: vvy:VVA1481 alkyl sulfatase; beta-lactamase domain-containing protein 3659818 4253631 Shewmr4_3060 Shewanella sp. MR-4 beta-lactamase domain-containing protein YP_735188.1 3657863 R 60480 CDS YP_735189.1 113971396 4253632 3660213..3660866 1 NC_008321.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 3660866 4253632 Shewmr4_3061 Shewanella sp. MR-4 dihydropteridine reductase YP_735189.1 3660213 D 60480 CDS YP_735190.1 113971397 4253633 3661169..3661813 1 NC_008321.1 PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO3716 DnaJ domain protein; heat shock protein DnaJ domain-containing protein 3661813 4253633 Shewmr4_3062 Shewanella sp. MR-4 heat shock protein DnaJ domain-containing protein YP_735190.1 3661169 D 60480 CDS YP_735191.1 113971398 4253634 3662080..3662832 1 NC_008321.1 PFAM: DSBA oxidoreductase; KEGG: son:SO3718 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase 3662832 4253634 Shewmr4_3063 Shewanella sp. MR-4 DSBA oxidoreductase YP_735191.1 3662080 D 60480 CDS YP_735192.1 113971399 4253635 complement(3662911..3663918) 1 NC_008321.1 KEGG: vpa:VP0375 putative lipoprotein; putative lipoprotein 3663918 4253635 Shewmr4_3064 Shewanella sp. MR-4 putative lipoprotein YP_735192.1 3662911 R 60480 CDS YP_735193.1 113971400 4253636 complement(3664186..3664713) 1 NC_008321.1 KEGG: son:SO3719 hypothetical protein; hypothetical protein 3664713 4253636 Shewmr4_3065 Shewanella sp. MR-4 hypothetical protein YP_735193.1 3664186 R 60480 CDS YP_735194.1 113971401 4253637 complement(3664756..3665277) 1 NC_008321.1 KEGG: son:SO3720 protoporphyrinogen oxidase; protoporphyrinogen oxidase 3665277 4253637 Shewmr4_3066 Shewanella sp. MR-4 protoporphyrinogen oxidase YP_735194.1 3664756 R 60480 CDS YP_735195.1 113971402 4253638 3665722..3666927 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: sdn:Sden_0720 major facilitator superfamily MFS_1; major facilitator transporter 3666927 4253638 Shewmr4_3067 Shewanella sp. MR-4 major facilitator transporter YP_735195.1 3665722 D 60480 CDS YP_735196.1 113971403 4253639 3667067..3667906 1 NC_008321.1 KEGG: son:SO3722 hypothetical protein; hypothetical protein 3667906 4253639 Shewmr4_3068 Shewanella sp. MR-4 hypothetical protein YP_735196.1 3667067 D 60480 CDS YP_735197.1 113971404 4253640 complement(3667928..3668545) 1 NC_008321.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 3668545 4253640 Shewmr4_3069 Shewanella sp. MR-4 adenylylsulfate kinase YP_735197.1 3667928 R 60480 CDS YP_735198.1 113971405 4253641 complement(3668596..3670320) 1 NC_008321.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sdn:Sden_0961 TrkA-C; TrkA domain-containing protein 3670320 4253641 Shewmr4_3070 Shewanella sp. MR-4 TrkA domain-containing protein YP_735198.1 3668596 R 60480 CDS YP_735199.1 113971406 4253642 complement(3670324..3671766) 1 NC_008321.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 3671766 cysN 4253642 cysN Shewanella sp. MR-4 sulfate adenylyltransferase subunit 1 YP_735199.1 3670324 R 60480 CDS YP_735200.1 113971407 4253643 complement(3671897..3672805) 1 NC_008321.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 3672805 4253643 Shewmr4_3072 Shewanella sp. MR-4 sulfate adenylyltransferase subunit 2 YP_735200.1 3671897 R 60480 CDS YP_735201.1 113971408 4253644 complement(3672887..3673717) 1 NC_008321.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO3728 uroporphyrin-III C-methyltransferase; uroporphyrinogen-III C-methyltransferase 3673717 4253644 Shewmr4_3073 Shewanella sp. MR-4 uroporphyrinogen-III C-methyltransferase YP_735201.1 3672887 R 60480 CDS YP_735202.1 113971409 4253645 3674147..3675031 1 NC_008321.1 PFAM: phospholipase A1; KEGG: sdn:Sden_0955 phospholipase A1; phospholipase A(1) 3675031 4253645 Shewmr4_3074 Shewanella sp. MR-4 phospholipase A(1) YP_735202.1 3674147 D 60480 CDS YP_735203.1 113971410 4253646 3675219..3676766 1 NC_008321.1 KEGG: son:SO3731 hypothetical protein; hypothetical protein 3676766 4253646 Shewmr4_3075 Shewanella sp. MR-4 hypothetical protein YP_735203.1 3675219 D 60480 CDS YP_735204.1 113971411 4253647 complement(3676821..3678557) 1 NC_008321.1 KEGG: son:SO3733 hypothetical protein; hypothetical protein 3678557 4253647 Shewmr4_3076 Shewanella sp. MR-4 hypothetical protein YP_735204.1 3676821 R 60480 CDS YP_735205.1 113971412 4253648 complement(3678923..3679708) 1 NC_008321.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 3679708 mtgA 4253648 mtgA Shewanella sp. MR-4 monofunctional biosynthetic peptidoglycan transglycosylase YP_735205.1 3678923 R 60480 CDS YP_735206.1 113971413 4253649 complement(3680385..3681182) 1 NC_008321.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 3681182 4253649 Shewmr4_3078 Shewanella sp. MR-4 phosphoadenosine phosphosulfate reductase YP_735206.1 3680385 R 60480 CDS YP_735207.1 113971414 4253650 complement(3681175..3682872) 1 NC_008321.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 3682872 4253650 Shewmr4_3079 Shewanella sp. MR-4 sulfite reductase subunit beta YP_735207.1 3681175 R 60480 CDS YP_735208.1 113971415 4253651 complement(3682947..3684761) 1 NC_008321.1 TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: son:SO3738 sulfite reductase (NADPH) flavoprotein alpha-component; sulfite reductase (NADPH) subunit alpha 3684761 4253651 Shewmr4_3080 Shewanella sp. MR-4 sulfite reductase (NADPH) subunit alpha YP_735208.1 3682947 R 60480 CDS YP_735209.1 113971416 4253652 3685179..3686705 1 NC_008321.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 3686705 pntA 4253652 pntA Shewanella sp. MR-4 NAD(P) transhydrogenase subunit alpha YP_735209.1 3685179 D 60480 CDS YP_735210.1 113971417 4253653 3686717..3688201 1 NC_008321.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 3688201 pntB 4253653 pntB Shewanella sp. MR-4 pyridine nucleotide transhydrogenase YP_735210.1 3686717 D 60480 CDS YP_735211.1 113971418 4253654 3688356..3688745 1 NC_008321.1 KEGG: son:SO3741.1 hypothetical protein; hypothetical protein 3688745 4253654 Shewmr4_3083 Shewanella sp. MR-4 hypothetical protein YP_735211.1 3688356 D 60480 CDS YP_735212.1 113971419 4253655 complement(3688834..3689313) 1 NC_008321.1 PFAM: regulatory protein, TetR; KEGG: son:SO3743 transcriptional regulator, TetR family; TetR family transcriptional regulator 3689313 4253655 Shewmr4_3084 Shewanella sp. MR-4 TetR family transcriptional regulator YP_735212.1 3688834 R 60480 CDS YP_735213.1 113971420 4253656 complement(3689467..3690294) 1 NC_008321.1 KEGG: son:SO3744 hypothetical protein; hypothetical protein 3690294 4253656 Shewmr4_3085 Shewanella sp. MR-4 hypothetical protein YP_735213.1 3689467 R 60480 CDS YP_735214.1 113971421 4253657 complement(3690291..3691721) 1 NC_008321.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3691721 4253657 Shewmr4_3086 Shewanella sp. MR-4 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_735214.1 3690291 R 60480 CDS YP_735215.1 113971422 4253658 3691824..3692750 1 NC_008321.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: son:SO3746 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 3692750 4253658 Shewmr4_3087 Shewanella sp. MR-4 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_735215.1 3691824 D 60480 CDS YP_735216.1 113971423 4253659 complement(3692917..3694641) 1 NC_008321.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 3694641 4253659 Shewmr4_3088 Shewanella sp. MR-4 potassium/proton antiporter YP_735216.1 3692917 R 60480 CDS YP_735217.1 113971424 4253660 3695264..3697549 1 NC_008321.1 KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein; putative nitric oxide reductase (subunit B) transmembrane protein 3697549 4253660 Shewmr4_3089 Shewanella sp. MR-4 putative nitric oxide reductase (subunit B) transmembrane protein YP_735217.1 3695264 D 60480 CDS YP_735218.1 113971425 4253661 3697743..3699299 1 NC_008321.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcription regulator 3699299 4253661 Shewmr4_3090 Shewanella sp. MR-4 anaerobic nitric oxide reductase transcription regulator YP_735218.1 3697743 D 60480 CDS YP_735219.1 113971426 4253662 3699471..3700385 1 NC_008321.1 PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: son:SO3748 LysM domain protein; ErfK/YbiS/YcfS/YnhG family protein 3700385 4253662 Shewmr4_3091 Shewanella sp. MR-4 ErfK/YbiS/YcfS/YnhG family protein YP_735219.1 3699471 D 60480 CDS YP_735220.1 113971427 4253663 complement(3700483..3701310) 1 NC_008321.1 KEGG: son:SO3749 hypothetical protein; hypothetical protein 3701310 4253663 Shewmr4_3092 Shewanella sp. MR-4 hypothetical protein YP_735220.1 3700483 R 60480 CDS YP_735221.1 113971428 4253664 3701473..3702888 1 NC_008321.1 PFAM: peptidase M16 domain protein; KEGG: gvi:glr3686 probable peptidase; peptidase M16 domain-containing protein 3702888 4253664 Shewmr4_3093 Shewanella sp. MR-4 peptidase M16 domain-containing protein YP_735221.1 3701473 D 60480 CDS YP_735222.1 113971429 4253665 3702885..3704420 1 NC_008321.1 PFAM: peptidase M16 domain protein; KEGG: son:SO3751 hypothetical protein; peptidase M16 domain-containing protein 3704420 4253665 Shewmr4_3094 Shewanella sp. MR-4 peptidase M16 domain-containing protein YP_735222.1 3702885 D 60480 CDS YP_735223.1 113971430 4253666 complement(3704455..3705135) 1 NC_008321.1 PFAM: response regulator receiver; KEGG: vpa:VP1711 response regulator; response regulator receiver/unknown domain-containing protein 3705135 4253666 Shewmr4_3095 Shewanella sp. MR-4 response regulator receiver/unknown domain-containing protein YP_735223.1 3704455 R 60480 CDS YP_735224.1 113971431 4253667 complement(3705135..3706748) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: bld:BLi01245 hypothetical protein; signal transduction histidine kinase regulating citrate/malate metabolism 3706748 4253667 Shewmr4_3096 Shewanella sp. MR-4 signal transduction histidine kinase regulating citrate/malate metabolism YP_735224.1 3705135 R 60480 CDS YP_735225.1 113971432 4253668 complement(3706764..3708284) 1 NC_008321.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: vpa:VP1653 putative tricarboxylic transport TctA; hypothetical protein 3708284 4253668 Shewmr4_3097 Shewanella sp. MR-4 hypothetical protein YP_735225.1 3706764 R 60480 CDS YP_735226.1 113971433 4253669 complement(3708287..3708754) 1 NC_008321.1 KEGG: vvy:VV1523 putative tricarboxylic transport membrane protein; putative tricarboxylic transport membrane protein 3708754 4253669 Shewmr4_3098 Shewanella sp. MR-4 putative tricarboxylic transport membrane protein YP_735226.1 3708287 R 60480 CDS YP_735227.1 113971434 4253670 complement(3708765..3709718) 1 NC_008321.1 PFAM: Uncharacterized protein UPF0065; KEGG: vpa:VP1651 putative tricarboxylic transport TctC; hypothetical protein 3709718 4253670 Shewmr4_3099 Shewanella sp. MR-4 hypothetical protein YP_735227.1 3708765 R 60480 CDS YP_735228.1 113971435 4253671 complement(3709731..3711011) 1 NC_008321.1 PFAM: phosphate-selective porin O and P; KEGG: pae:PA3279 outer membrane porin OprP precursor; phosphate-selective porin O and P 3711011 4253671 Shewmr4_3100 Shewanella sp. MR-4 phosphate-selective porin O and P YP_735228.1 3709731 R 60480 CDS YP_735229.1 113971436 4253672 complement(3711588..3712376) 1 NC_008321.1 PFAM: protein of unknown function DUF583; KEGG: sdn:Sden_0706 protein of unknown function DUF583; hypothetical protein 3712376 4253672 Shewmr4_3101 Shewanella sp. MR-4 hypothetical protein YP_735229.1 3711588 R 60480 CDS YP_735230.1 113971437 4253673 3712605..3713807 1 NC_008321.1 PFAM: AFG1-family ATPase; KEGG: son:SO3756 hypothetical ATPase; AFG1 family ATPase 3713807 4253673 Shewmr4_3102 Shewanella sp. MR-4 AFG1 family ATPase YP_735230.1 3712605 D 60480 CDS YP_735231.1 113971438 4253674 3713857..3714294 1 NC_008321.1 PFAM: regulatory protein, MerR; KEGG: vpa:VPA1563 putative transcriptional regulator; MerR family transcriptional regulator 3714294 4253674 Shewmr4_3103 Shewanella sp. MR-4 MerR family transcriptional regulator YP_735231.1 3713857 D 60480 CDS YP_735232.1 113971439 4253675 3714532..3715467 1 NC_008321.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: vpa:VPA1564 hypothetical protein; NAD-dependent epimerase/dehydratase 3715467 4253675 Shewmr4_3104 Shewanella sp. MR-4 NAD-dependent epimerase/dehydratase YP_735232.1 3714532 D 60480 CDS YP_735233.1 113971440 4253676 complement(3715566..3716189) 1 NC_008321.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vvu:VV12509 putative threonine efflux protein; lysine exporter protein LysE/YggA 3716189 4253676 Shewmr4_3105 Shewanella sp. MR-4 lysine exporter protein LysE/YggA YP_735233.1 3715566 R 60480 CDS YP_735234.1 113971441 4253677 complement(3716265..3717242) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3757 rubisco operon transcriptional regulator; LysR family transcriptional regulator 3717242 4253677 Shewmr4_3106 Shewanella sp. MR-4 LysR family transcriptional regulator YP_735234.1 3716265 R 60480 CDS YP_735235.1 113971442 4253678 3717379..3718338 1 NC_008321.1 PFAM: protein of unknown function DUF897; KEGG: son:SO3758 hypothetical protein; hypothetical protein 3718338 4253678 Shewmr4_3107 Shewanella sp. MR-4 hypothetical protein YP_735235.1 3717379 D 60480 CDS YP_735236.1 113971443 4253679 complement(3718420..3719391) 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: son:SO3759 GGDEF domain protein; diguanylate cyclase with GAF sensor 3719391 4253679 Shewmr4_3108 Shewanella sp. MR-4 diguanylate cyclase with GAF sensor YP_735236.1 3718420 R 60480 CDS YP_735237.1 113971444 4253680 complement(3719451..3722315) 1 NC_008321.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3722315 4253680 Shewmr4_3109 Shewanella sp. MR-4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_735237.1 3719451 R 60480 CDS YP_735238.1 113971445 4253681 3722567..3723544 1 NC_008321.1 KEGG: son:SO3761 hypothetical protein; hypothetical protein 3723544 4253681 Shewmr4_3110 Shewanella sp. MR-4 hypothetical protein YP_735238.1 3722567 D 60480 CDS YP_735239.1 113971446 4253682 3723560..3724459 1 NC_008321.1 PFAM: protein of unknown function DUF350; KEGG: son:SO3762 hypothetical protein; hypothetical protein 3724459 4253682 Shewmr4_3111 Shewanella sp. MR-4 hypothetical protein YP_735239.1 3723560 D 60480 CDS YP_735240.1 113971447 4253683 3724464..3726197 1 NC_008321.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 3726197 4253683 Shewmr4_3112 Shewanella sp. MR-4 spermidine synthase YP_735240.1 3724464 D 60480 CDS YP_735241.1 113971448 4253684 3726276..3726689 1 NC_008321.1 KEGG: son:SO3764 hypothetical protein; hypothetical protein 3726689 4253684 Shewmr4_3113 Shewanella sp. MR-4 hypothetical protein YP_735241.1 3726276 D 60480 CDS YP_735242.1 113971449 4253685 3726702..3727391 1 NC_008321.1 PFAM: PspA/IM30 family protein; KEGG: son:SO3765 hypothetical protein; phage shock protein A, PspA 3727391 4253685 Shewmr4_3114 Shewanella sp. MR-4 phage shock protein A, PspA YP_735242.1 3726702 D 60480 CDS YP_735243.1 113971450 4253686 3727539..3728192 1 NC_008321.1 KEGG: son:SO3766 hypothetical protein; hypothetical protein 3728192 4253686 Shewmr4_3115 Shewanella sp. MR-4 hypothetical protein YP_735243.1 3727539 D 60480 CDS YP_735244.1 113971451 4253687 3728300..3728629 1 NC_008321.1 KEGG: son:SO3767 hypothetical protein; hypothetical protein 3728629 4253687 Shewmr4_3116 Shewanella sp. MR-4 hypothetical protein YP_735244.1 3728300 D 60480 CDS YP_735245.1 113971452 4253688 3728765..3729589 1 NC_008321.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: son:SO3768 ion transporter; Ion transport 2 domain-containing protein 3729589 4253688 Shewmr4_3117 Shewanella sp. MR-4 Ion transport 2 domain-containing protein YP_735245.1 3728765 D 60480 CDS YP_735246.1 113971453 4253689 complement(3729628..3731139) 1 NC_008321.1 PFAM: adenylate cyclase; KEGG: son:SO3769 hypothetical protein; adenylate cyclase 3731139 4253689 Shewmr4_3118 Shewanella sp. MR-4 adenylate cyclase YP_735246.1 3729628 R 60480 CDS YP_735247.1 113971454 4253690 3731371..3732051 1 NC_008321.1 PFAM: protein of unknown function DUF47; KEGG: son:SO3770 conserved hypothetical protein TIGR00153; hypothetical protein 3732051 4253690 Shewmr4_3119 Shewanella sp. MR-4 hypothetical protein YP_735247.1 3731371 D 60480 CDS YP_735248.1 113971455 4253691 3732077..3733366 1 NC_008321.1 PFAM: phosphate transporter; KEGG: son:SO3771 phosphate transporter, putative; phosphate transporter 3733366 4253691 Shewmr4_3120 Shewanella sp. MR-4 phosphate transporter YP_735248.1 3732077 D 60480 CDS YP_735249.1 113971456 4253692 3733559..3734107 1 NC_008321.1 SMART: SH3 domain protein domain protein; KEGG: son:SO3772 SH3 domain protein; SH3 domain-containing protein 3734107 4253692 Shewmr4_3121 Shewanella sp. MR-4 SH3 domain-containing protein YP_735249.1 3733559 D 60480 CDS YP_735250.1 113971457 4253693 3734367..3737561 1 NC_008321.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 3737561 4253693 Shewmr4_3122 Shewanella sp. MR-4 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_735250.1 3734367 D 60480 CDS YP_735251.1 113971458 4253694 3738569..3739303 1 NC_008321.1 PFAM: protein of unknown function DUF599; KEGG: son:SO3776 hypothetical protein; hypothetical protein 3739303 4253694 Shewmr4_3123 Shewanella sp. MR-4 hypothetical protein YP_735251.1 3738569 D 60480 CDS YP_735252.1 113971459 4253695 3739398..3739577 1 NC_008321.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: son:SO3777 hypothetical protein; DNA binding domain-containing protein 3739577 4253695 Shewmr4_3124 Shewanella sp. MR-4 DNA binding domain-containing protein YP_735252.1 3739398 D 60480 CDS YP_735253.1 113971460 4253696 complement(3739629..3740243) 1 NC_008321.1 TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: son:SO3778 adenylate cyclase CyaB, putative; putative adenylyl cyclase CyaB 3740243 4253696 Shewmr4_3125 Shewanella sp. MR-4 putative adenylyl cyclase CyaB YP_735253.1 3739629 R 60480 CDS YP_735254.1 113971461 4253697 complement(3740296..3742047) 1 NC_008321.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 3742047 4253697 Shewmr4_3126 Shewanella sp. MR-4 cysteine/glutathione ABC transporter membrane/ATP-binding component YP_735254.1 3740296 R 60480 CDS YP_735255.1 113971462 4253698 complement(3742044..3743999) 1 NC_008321.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 3743999 4253698 Shewmr4_3127 Shewanella sp. MR-4 cysteine/glutathione ABC transporter membrane/ATP-binding component YP_735255.1 3742044 R 60480 CDS YP_735256.1 113971463 4253699 complement(3744247..3745293) 1 NC_008321.1 KEGG: son:SO3782 hypothetical protein; hypothetical protein 3745293 4253699 Shewmr4_3128 Shewanella sp. MR-4 hypothetical protein YP_735256.1 3744247 R 60480 CDS YP_735257.1 113971464 4253700 3745689..3747338 1 NC_008321.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO3783 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase domain-containing protein 3747338 4253700 Shewmr4_3129 Shewanella sp. MR-4 DEAD/DEAH box helicase domain-containing protein YP_735257.1 3745689 D 60480 CDS YP_735258.1 113971465 4253701 complement(3747448..3749148) 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vch:VC1405 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3749148 4253701 Shewmr4_3130 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_735258.1 3747448 R 60480 CDS YP_735259.1 113971466 4253702 3749418..3750665 1 NC_008321.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO3789 aminotransferase, class V; cysteine desulfurase 3750665 4253702 Shewmr4_3131 Shewanella sp. MR-4 cysteine desulfurase YP_735259.1 3749418 D 60480 CDS YP_735260.1 113971467 4253703 3750733..3751176 1 NC_008321.1 PFAM: Fe-S metabolism associated SufE; KEGG: son:SO3790 hypothetical protein; Fe-S metabolism associated SufE 3751176 4253703 Shewmr4_3132 Shewanella sp. MR-4 Fe-S metabolism associated SufE YP_735260.1 3750733 D 60480 CDS YP_735261.1 113971468 4253704 3751287..3752450 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase M19, renal dipeptidase; KEGG: son:SO3791 renal dipeptidase family protein; twin-arginine translocation pathway signal 3752450 4253704 Shewmr4_3133 Shewanella sp. MR-4 twin-arginine translocation pathway signal YP_735261.1 3751287 D 60480 CDS YP_735262.1 113971469 4253705 3752510..3753682 1 NC_008321.1 KEGG: son:SO3792 hypothetical protein; hypothetical protein 3753682 4253705 Shewmr4_3134 Shewanella sp. MR-4 hypothetical protein YP_735262.1 3752510 D 60480 CDS YP_735263.1 113971470 4253706 complement(3753707..3754036) 1 NC_008321.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: son:SO3793 hypothetical protein; cupin 2 domain-containing protein 3754036 4253706 Shewmr4_3135 Shewanella sp. MR-4 cupin 2 domain-containing protein YP_735263.1 3753707 R 60480 CDS YP_735264.1 113971471 4253707 3754183..3756450 1 NC_008321.1 KEGG: son:SO3794 hypothetical protein; hypothetical protein 3756450 4253707 Shewmr4_3136 Shewanella sp. MR-4 hypothetical protein YP_735264.1 3754183 D 60480 CDS YP_735265.1 113971472 4253708 complement(3756513..3756887) 1 NC_008321.1 PFAM: protein of unknown function DUF1696; KEGG: son:SO3796 hypothetical protein; hypothetical protein 3756887 4253708 Shewmr4_3137 Shewanella sp. MR-4 hypothetical protein YP_735265.1 3756513 R 60480 CDS YP_735266.1 113971473 4253709 complement(3757029..3758945) 1 NC_008321.1 PFAM: peptidase U32; KEGG: son:SO3797 peptidase, U32 family; peptidase U32 3758945 4253709 Shewmr4_3138 Shewanella sp. MR-4 peptidase U32 YP_735266.1 3757029 R 60480 CDS YP_735267.1 113971474 4253710 3759133..3759810 1 NC_008321.1 PFAM: pseudouridine synthase; KEGG: sdn:Sden_3048 pseudouridylate synthase; ribosomal large subunit pseudouridine synthase A 3759810 4253710 Shewmr4_3139 Shewanella sp. MR-4 ribosomal large subunit pseudouridine synthase A YP_735267.1 3759133 D 60480 CDS YP_735268.1 113971475 4253711 3759873..3760367 1 NC_008321.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 3760367 4253711 Shewmr4_3140 Shewanella sp. MR-4 DNA-binding transcriptional regulator AsnC YP_735268.1 3759873 D 60480 CDS YP_735269.1 113971476 4253712 3760573..3764754 1 NC_008321.1 PFAM: protease-associated PA domain protein; KEGG: ade:Adeh_2937 protease-associated PA; protease domain-containing protein 3764754 4253712 Shewmr4_3141 Shewanella sp. MR-4 protease domain-containing protein YP_735269.1 3760573 D 60480 CDS YP_735270.1 113971477 4253713 complement(3764830..3765333) 1 NC_008321.1 hypothetical protein 3765333 4253713 Shewmr4_3142 Shewanella sp. MR-4 hypothetical protein YP_735270.1 3764830 R 60480 CDS YP_735271.1 113971478 4253714 complement(3765478..3766248) 1 NC_008321.1 PFAM: ABC-2 type transporter; KEGG: son:SO3801 ABC transporter, permease protein; ABC-2 type transporter 3766248 4253714 Shewmr4_3143 Shewanella sp. MR-4 ABC-2 type transporter YP_735271.1 3765478 R 60480 CDS YP_735272.1 113971479 4253715 complement(3766245..3767183) 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3802 ABC transporter, ATP-binding protein; ABC transporter-like protein 3767183 4253715 Shewmr4_3144 Shewanella sp. MR-4 ABC transporter-like protein YP_735272.1 3766245 R 60480 CDS YP_735273.1 113971480 4253716 complement(3767411..3767941) 1 NC_008321.1 KEGG: son:SO3803 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 3767941 4253716 Shewmr4_3145 Shewanella sp. MR-4 hypoxanthine phosphoribosyltransferase YP_735273.1 3767411 R 60480 CDS YP_735274.1 113971481 4253717 complement(3767949..3768608) 1 NC_008321.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: son:SO3804 phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative; aromatic acid decarboxylase 3768608 4253717 Shewmr4_3146 Shewanella sp. MR-4 aromatic acid decarboxylase YP_735274.1 3767949 R 60480 CDS YP_735275.1 113971482 4253718 complement(3768610..3770007) 1 NC_008321.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO3805 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; UDP-N-acetylmuramate 3770007 4253718 Shewmr4_3147 Shewanella sp. MR-4 UDP-N-acetylmuramate YP_735275.1 3768610 R 60480 CDS YP_735276.1 113971483 4253719 complement(3770179..3770811) 1 NC_008321.1 KEGG: cps:CPS_1725 hypothetical protein; hypothetical protein 3770811 4253719 Shewmr4_3148 Shewanella sp. MR-4 hypothetical protein YP_735276.1 3770179 R 60480 CDS YP_735277.1 113971484 4253720 complement(3771009..3771872) 1 NC_008321.1 KEGG: son:SO3807 sterol desaturase family protein; sterol desaturase family protein 3771872 4253720 Shewmr4_3149 Shewanella sp. MR-4 sterol desaturase family protein YP_735277.1 3771009 R 60480 CDS YP_735278.1 113971485 4253721 complement(3771917..3772948) 1 NC_008321.1 KEGG: son:SO3808 hypothetical protein; hypothetical protein 3772948 4253721 Shewmr4_3150 Shewanella sp. MR-4 hypothetical protein YP_735278.1 3771917 R 60480 CDS YP_735279.1 113971486 4253722 complement(3773203..3773706) 1 NC_008321.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: son:SO3810 OmpA-like transmembrane domain protein; OmpA domain-containing protein 3773706 4253722 Shewmr4_3151 Shewanella sp. MR-4 OmpA domain-containing protein YP_735279.1 3773203 R 60480 CDS YP_735280.1 113971487 4253723 3773891..3774469 1 NC_008321.1 PFAM: Uncharacterized lipoprotein; KEGG: son:SO3811 lipoprotein, putative; hypothetical protein 3774469 4253723 Shewmr4_3152 Shewanella sp. MR-4 hypothetical protein YP_735280.1 3773891 D 60480 CDS YP_735281.1 113971488 4253724 3774503..3775090 1 NC_008321.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO3812 peptidyl-prolyl cis-trans isomerase A; peptidyl-prolyl cis-trans isomerase, cyclophilin type 3775090 4253724 Shewmr4_3153 Shewanella sp. MR-4 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_735281.1 3774503 D 60480 CDS YP_735282.1 113971489 4253725 3775160..3775480 1 NC_008321.1 KEGG: son:SO3813 hypothetical protein; hypothetical protein 3775480 4253725 Shewmr4_3154 Shewanella sp. MR-4 hypothetical protein YP_735282.1 3775160 D 60480 CDS YP_735283.1 113971490 4253726 3775630..3777027 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3814 AmpG protein, putative; major facilitator transporter 3777027 4253726 Shewmr4_3155 Shewanella sp. MR-4 major facilitator transporter YP_735283.1 3775630 D 60480 CDS YP_735284.1 113971491 4253727 complement(3777118..3777603) 1 NC_008321.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 3777603 4253727 Shewmr4_3156 Shewanella sp. MR-4 putative nucleotide-binding protein YP_735284.1 3777118 R 60480 CDS YP_735285.1 113971492 4253728 3777766..3778128 1 NC_008321.1 PFAM: VanZ family protein; KEGG: son:SO3816 hypothetical protein; VanZ family protein 3778128 4253728 Shewmr4_3157 Shewanella sp. MR-4 VanZ family protein YP_735285.1 3777766 D 60480 CDS YP_735286.1 113971493 4253729 3778128..3779108 1 NC_008321.1 KEGG: son:SO3817 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 3779108 4253729 Shewmr4_3158 Shewanella sp. MR-4 2-dehydropantoate 2-reductase YP_735286.1 3778128 D 60480 CDS YP_735287.1 113971494 4253730 3779404..3779742 1 NC_008321.1 PFAM: nitrogen regulatory protein P-II; KEGG: son:SO3819 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3779742 4253730 Shewmr4_3159 Shewanella sp. MR-4 nitrogen regulatory protein P-II YP_735287.1 3779404 D 60480 CDS YP_735288.1 113971495 4253731 3779739..3781139 1 NC_008321.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cps:CPS_3995 ammonium transporter; ammonium transporter 3781139 4253731 Shewmr4_3160 Shewanella sp. MR-4 ammonium transporter YP_735288.1 3779739 D 60480 CDS YP_735289.1 113971496 4253732 complement(3781439..3782311) 1 NC_008321.1 KEGG: son:SO3822 hypothetical protein; hypothetical protein 3782311 4253732 Shewmr4_3162 Shewanella sp. MR-4 hypothetical protein YP_735289.1 3781439 R 60480 CDS YP_735290.1 113971497 4253733 complement(3782476..3783324) 1 NC_008321.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 3783324 4253733 Shewmr4_3163 Shewanella sp. MR-4 2-dehydro-3-deoxyphosphooctonate aldolase YP_735290.1 3782476 R 60480 CDS YP_735291.1 113971498 4253734 complement(3783382..3784629) 1 NC_008321.1 PFAM: protein of unknown function DUF819; KEGG: son:SO3828 hypothetical protein; hypothetical protein 3784629 4253734 Shewmr4_3164 Shewanella sp. MR-4 hypothetical protein YP_735291.1 3783382 R 60480 CDS YP_735292.1 113971499 4253735 complement(3784774..3785562) 1 NC_008321.1 KEGG: son:SO3829 hypothetical protein; hypothetical protein 3785562 4253735 Shewmr4_3165 Shewanella sp. MR-4 hypothetical protein YP_735292.1 3784774 R 60480 CDS YP_735293.1 113971500 4253736 complement(3785562..3785957) 1 NC_008321.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: son:SO3830 hypothetical protein; invasion gene expression up-regulator, SirB 3785957 4253736 Shewmr4_3166 Shewanella sp. MR-4 invasion gene expression up-regulator, SirB YP_735293.1 3785562 R 60480 CDS YP_735294.1 113971501 4253737 3786076..3786489 1 NC_008321.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3831 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 3786489 4253737 Shewmr4_3167 Shewanella sp. MR-4 GCN5-related N-acetyltransferase YP_735294.1 3786076 D 60480 CDS YP_735295.1 113971502 4253738 complement(3786635..3787495) 1 NC_008321.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: son:SO3832 hemK family protein; HemK family modification methylase 3787495 4253738 Shewmr4_3168 Shewanella sp. MR-4 HemK family modification methylase YP_735295.1 3786635 R 60480 CDS YP_735296.1 113971503 4253739 complement(3787498..3788589) 1 NC_008321.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 3788589 prfA 4253739 prfA Shewanella sp. MR-4 peptide chain release factor 1 YP_735296.1 3787498 R 60480 CDS YP_735297.1 113971504 4253740 complement(3788604..3789854) 1 NC_008321.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 3789854 hemA 4253740 hemA Shewanella sp. MR-4 glutamyl-tRNA reductase YP_735297.1 3788604 R 60480 CDS YP_735298.1 113971505 4253741 3790109..3790753 1 NC_008321.1 TIGRFAM: outer membrane lipoprotein LolB; PFAM: outer membrane lipoprotein LolB; KEGG: son:SO3835 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 3790753 4253741 Shewmr4_3171 Shewanella sp. MR-4 outer membrane lipoprotein LolB YP_735298.1 3790109 D 60480 CDS YP_735299.1 113971506 4253742 3790755..3791609 1 NC_008321.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3791609 ipk 4253742 ipk Shewanella sp. MR-4 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_735299.1 3790755 D 60480 CDS YP_735300.1 113971507 4253743 3791722..3792669 1 NC_008321.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3792669 4253743 Shewmr4_3173 Shewanella sp. MR-4 ribose-phosphate pyrophosphokinase YP_735300.1 3791722 D 60480 CDS YP_735301.1 113971508 4253744 complement(3792855..3794717) 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3838 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3794717 4253744 Shewmr4_3174 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_735301.1 3792855 R 60480 CDS YP_735302.1 113971509 4253745 3795118..3795651 1 NC_008321.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO3840 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3795651 4253745 Shewmr4_3175 Shewanella sp. MR-4 ECF subfamily RNA polymerase sigma-24 factor YP_735302.1 3795118 D 60480 CDS YP_735303.1 113971510 4253746 3795651..3796226 1 NC_008321.1 KEGG: son:SO3841 hypothetical protein; hypothetical protein 3796226 4253746 Shewmr4_3176 Shewanella sp. MR-4 hypothetical protein YP_735303.1 3795651 D 60480 CDS YP_735304.1 113971511 4253747 3796223..3797179 1 NC_008321.1 KEGG: son:SO3842 hypothetical protein; hypothetical protein 3797179 4253747 Shewmr4_3177 Shewanella sp. MR-4 hypothetical protein YP_735304.1 3796223 D 60480 CDS YP_735305.1 113971512 4253748 complement(3797265..3797972) 1 NC_008321.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sdn:Sden_1090 pseudouridine synthase, Rsu; ribosomal small subunit pseudouridine synthase A 3797972 4253748 Shewmr4_3178 Shewanella sp. MR-4 ribosomal small subunit pseudouridine synthase A YP_735305.1 3797265 R 60480 CDS YP_735306.1 113971513 4253749 3798311..3800395 1 NC_008321.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO3844 peptidase, M13 family; endothelin-converting protein 1 3800395 4253749 Shewmr4_3179 Shewanella sp. MR-4 endothelin-converting protein 1 YP_735306.1 3798311 D 60480 CDS YP_735307.1 113971514 4253750 3800593..3801378 1 NC_008321.1 KEGG: son:SO3846 hypothetical protein; hypothetical protein 3801378 4253750 Shewmr4_3180 Shewanella sp. MR-4 hypothetical protein YP_735307.1 3800593 D 60480 CDS YP_735308.1 113971515 4253751 3801627..3802034 1 NC_008321.1 KEGG: son:SO3847 hypothetical protein; hypothetical protein 3802034 4253751 Shewmr4_3181 Shewanella sp. MR-4 hypothetical protein YP_735308.1 3801627 D 60480 CDS YP_735309.1 113971516 4253752 3802076..3802576 1 NC_008321.1 KEGG: son:SO3848 hypothetical protein; hypothetical protein 3802576 4253752 Shewmr4_3182 Shewanella sp. MR-4 hypothetical protein YP_735309.1 3802076 D 60480 CDS YP_735310.1 113971517 4253753 complement(3802648..3803277) 1 NC_008321.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: sdn:Sden_0739 glutathione S-transferase-like protein; glutathione S-transferase domain-containing protein 3803277 4253753 Shewmr4_3183 Shewanella sp. MR-4 glutathione S-transferase domain-containing protein YP_735310.1 3802648 R 60480 CDS YP_735311.1 113971518 4253754 complement(3803397..3805982) 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sdn:Sden_0738 TonB-dependent receptor; TonB-dependent receptor 3805982 4253754 Shewmr4_3184 Shewanella sp. MR-4 TonB-dependent receptor YP_735311.1 3803397 R 60480 CDS YP_735312.1 113971519 4253755 3806182..3806724 1 NC_008321.1 PFAM: membrane-flanked domain; KEGG: son:SO3849 hypothetical protein; membrane-flanked domain-containing protein 3806724 4253755 Shewmr4_3185 Shewanella sp. MR-4 membrane-flanked domain-containing protein YP_735312.1 3806182 D 60480 CDS YP_735313.1 113971520 4253756 3806808..3808094 1 NC_008321.1 KEGG: vpa:VP2681 putative manganese transporter; putative manganese transporter 3808094 4253756 Shewmr4_3186 Shewanella sp. MR-4 putative manganese transporter YP_735313.1 3806808 D 60480 CDS YP_735314.1 113971521 4253757 3808240..3808710 1 NC_008321.1 PFAM: protein of unknown function DUF1456; KEGG: son:SO3852 hypothetical protein; hypothetical protein 3808710 4253757 Shewmr4_3187 Shewanella sp. MR-4 hypothetical protein YP_735314.1 3808240 D 60480 CDS YP_735315.1 113971522 4253758 3808979..3810667 1 NC_008321.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 3810667 4253758 Shewmr4_3188 Shewanella sp. MR-4 malate dehydrogenase YP_735315.1 3808979 D 60480 CDS YP_735316.1 113971523 4253759 complement(3810736..3811170) 1 NC_008321.1 KEGG: son:SO3856 hypothetical protein; hypothetical protein 3811170 4253759 Shewmr4_3189 Shewanella sp. MR-4 hypothetical protein YP_735316.1 3810736 R 60480 CDS YP_735317.1 113971524 4253760 complement(3811195..3811722) 1 NC_008321.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO3857 PAP2 family protein; phosphoesterase, PA-phosphatase related 3811722 4253760 Shewmr4_3190 Shewanella sp. MR-4 phosphoesterase, PA-phosphatase related YP_735317.1 3811195 R 60480 CDS YP_735318.1 113971525 4253761 3811837..3813777 1 NC_008321.1 KEGG: son:SO3859 cyclic nucleotide phosphodiesterase, putative; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 3813777 4253761 Shewmr4_3191 Shewanella sp. MR-4 diguanylate cyclase YP_735318.1 3811837 D 60480 CDS YP_735319.1 113971526 4253762 complement(3813779..3814576) 1 NC_008321.1 SMART: extracellular solute-binding protein, family 3; KEGG: son:SO3860 hypothetical protein; extracellular solute-binding protein 3814576 4253762 Shewmr4_3192 Shewanella sp. MR-4 extracellular solute-binding protein YP_735319.1 3813779 R 60480 CDS YP_735320.1 113971527 4253763 3814741..3815922 1 NC_008321.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: son:SO3861 iron-sulfur cluster-binding protein; putative iron-sulfur cluster binding protein 3815922 4253763 Shewmr4_3193 Shewanella sp. MR-4 putative iron-sulfur cluster binding protein YP_735320.1 3814741 D 60480 CDS YP_735321.1 113971528 4253764 complement(3815940..3816719) 1 NC_008321.1 TIGRFAM: molybdate transport repressor, ModE; Molybdenum-pterin binding; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: son:SO3862 molybdenum transport regulatory protein ModE; ModE family transcriptional regulator 3816719 4253764 Shewmr4_3194 Shewanella sp. MR-4 ModE family transcriptional regulator YP_735321.1 3815940 R 60480 CDS YP_735322.1 113971529 4253765 3816922..3817707 1 NC_008321.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO3863 molybdenum ABC transporter, periplasmic molybdenum-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 3817707 4253765 Shewmr4_3195 Shewanella sp. MR-4 molybdenum ABC transporter periplasmic molybdate-binding protein YP_735322.1 3816922 D 60480 CDS YP_735323.1 113971530 4253766 3817707..3818444 1 NC_008321.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 3818444 modB 4253766 modB Shewanella sp. MR-4 molybdate ABC transporter permease YP_735323.1 3817707 D 60480 CDS YP_735324.1 113971531 4253767 3818438..3819523 1 NC_008321.1 Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 3819523 modC 4253767 modC Shewanella sp. MR-4 molybdate transporter ATP-binding protein YP_735324.1 3818438 D 60480 CDS YP_735325.1 113971532 4253768 3819576..3821021 1 NC_008321.1 PFAM: phage integrase family protein; KEGG: son:SO3866 site-specific recombinase, phage integrase family; phage integrase family protein 3821021 4253768 Shewmr4_3198 Shewanella sp. MR-4 phage integrase family protein YP_735325.1 3819576 D 60480 CDS YP_735326.1 113971533 4253769 3821086..3821418 1 NC_008321.1 hypothetical protein 3821418 4253769 Shewmr4_3199 Shewanella sp. MR-4 hypothetical protein YP_735326.1 3821086 D 60480 CDS YP_735327.1 113971534 4253770 3821495..3821755 1 NC_008321.1 hypothetical protein 3821755 4253770 Shewmr4_3200 Shewanella sp. MR-4 hypothetical protein YP_735327.1 3821495 D 60480 CDS YP_735328.1 113971535 4253771 complement(3821825..3822061) 1 NC_008321.1 PFAM: helix-turn-helix domain protein; KEGG: ngo:NGO0797 putative transcriptional regulator; XRE family transcriptional regulator 3822061 4253771 Shewmr4_3201 Shewanella sp. MR-4 XRE family transcriptional regulator YP_735328.1 3821825 R 60480 CDS YP_735329.1 113971536 4253772 3822348..3823601 1 NC_008321.1 KEGG: bfr:BF3681 C-5 cytosine-specific DNA-methylase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 3823601 4253772 Shewmr4_3202 Shewanella sp. MR-4 DNA-cytosine methyltransferase YP_735329.1 3822348 D 60480 CDS YP_735330.1 113971537 4253773 complement(3823637..3824524) 1 NC_008321.1 KEGG: bld:BLi00747 hypothetical protein; hypothetical protein 3824524 4253773 Shewmr4_3203 Shewanella sp. MR-4 hypothetical protein YP_735330.1 3823637 R 60480 CDS YP_735331.1 113971538 4253774 complement(3824791..3825630) 1 NC_008321.1 PFAM: Integrase, catalytic region; KEGG: son:SOA0129 transposase, IS3 family; integrase catalytic subunit 3825630 4253774 Shewmr4_3204 Shewanella sp. MR-4 integrase catalytic subunit YP_735331.1 3824791 R 60480 CDS YP_735332.1 113971539 4253775 3826237..3827889 1 NC_008321.1 KEGG: cpe:CPE1290 hypothetical protein; hypothetical protein 3827889 4253775 Shewmr4_3206 Shewanella sp. MR-4 hypothetical protein YP_735332.1 3826237 D 60480 CDS YP_735333.1 113971540 4253776 3827889..3829388 1 NC_008321.1 KEGG: cpe:CPE1289 hypothetical protein; hypothetical protein 3829388 4253776 Shewmr4_3207 Shewanella sp. MR-4 hypothetical protein YP_735333.1 3827889 D 60480 CDS YP_735334.1 113971541 4253777 3829637..3831271 1 NC_008321.1 PFAM: SEC-C motif domain protein; Sel1 domain protein repeat-containing protein; KEGG: pcr:Pcryo_2230 Sel1; SecC motif-containing protein 3831271 4253777 Shewmr4_3208 Shewanella sp. MR-4 SecC motif-containing protein YP_735334.1 3829637 D 60480 CDS YP_735335.1 113971542 4253778 complement(3832025..3837088) 1 NC_008321.1 PFAM: AAA-4 family protein; peptidase C14, caspase catalytic subunit p20; KEGG: rpd:RPD_2288 hypothetical protein; putative transcriptional regulator 3837088 4253778 Shewmr4_3209 Shewanella sp. MR-4 putative transcriptional regulator YP_735335.1 3832025 R 60480 CDS YP_735336.1 113971543 4253779 complement(3837529..3838785) 1 NC_008321.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sdn:Sden_3235 DNA-directed DNA polymerase; DNA-directed DNA polymerase 3838785 4253779 Shewmr4_3210 Shewanella sp. MR-4 DNA-directed DNA polymerase YP_735336.1 3837529 R 60480 CDS YP_735337.1 113971544 4253780 complement(3839650..3840126) 1 NC_008321.1 KEGG: csa:Csal_2379 hypothetical protein; hypothetical protein 3840126 4253780 Shewmr4_3212 Shewanella sp. MR-4 hypothetical protein YP_735337.1 3839650 R 60480 CDS YP_735338.1 113971545 4253781 complement(3840144..3840455) 1 NC_008321.1 hypothetical protein 3840455 4253781 Shewmr4_3213 Shewanella sp. MR-4 hypothetical protein YP_735338.1 3840144 R 60480 CDS YP_735339.1 113971546 4253782 complement(3840459..3840818) 1 NC_008321.1 hypothetical protein 3840818 4253782 Shewmr4_3214 Shewanella sp. MR-4 hypothetical protein YP_735339.1 3840459 R 60480 CDS YP_735340.1 113971547 4253783 complement(3840873..3842117) 1 NC_008321.1 hypothetical protein 3842117 4253783 Shewmr4_3215 Shewanella sp. MR-4 hypothetical protein YP_735340.1 3840873 R 60480 CDS YP_735341.1 113971548 4253784 complement(3842291..3844258) 1 NC_008321.1 KEGG: bme:BMEI1696 hypothetical membrane spanning protein; hypothetical protein 3844258 4253784 Shewmr4_3216 Shewanella sp. MR-4 hypothetical protein YP_735341.1 3842291 R 60480 CDS YP_735342.1 113971549 4253785 3844772..3845476 1 NC_008321.1 hypothetical protein 3845476 4253785 Shewmr4_3217 Shewanella sp. MR-4 hypothetical protein YP_735342.1 3844772 D 60480 CDS YP_735343.1 113971550 4253786 3845629..3846561 1 NC_008321.1 PFAM: phage integrase family protein; KEGG: son:SO3884 site-specific recombinase, phage integrase family; phage integrase family protein 3846561 4253786 Shewmr4_3218 Shewanella sp. MR-4 phage integrase family protein YP_735343.1 3845629 D 60480 CDS YP_735344.1 113971551 4253787 3846555..3848597 1 NC_008321.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: son:SO3885 ATPase, AAA family; ATPase central domain-containing protein 3848597 4253787 Shewmr4_3219 Shewanella sp. MR-4 ATPase central domain-containing protein YP_735344.1 3846555 D 60480 CDS YP_735345.1 113971552 4253788 3848620..3849108 1 NC_008321.1 KEGG: son:SO3886 hypothetical protein; hypothetical protein 3849108 4253788 Shewmr4_3220 Shewanella sp. MR-4 hypothetical protein YP_735345.1 3848620 D 60480 CDS YP_735346.1 113971553 4253789 3849190..3849594 1 NC_008321.1 KEGG: son:SO3887 hypothetical protein; hypothetical protein 3849594 4253789 Shewmr4_3221 Shewanella sp. MR-4 hypothetical protein YP_735346.1 3849190 D 60480 CDS YP_735347.1 113971554 4253790 3849724..3850056 1 NC_008321.1 PFAM: protein of unknown function DUF1508; KEGG: son:SO3888 hypothetical protein; hypothetical protein 3850056 4253790 Shewmr4_3222 Shewanella sp. MR-4 hypothetical protein YP_735347.1 3849724 D 60480 CDS YP_735348.1 113971555 4253791 complement(3850581..3852170) 1 NC_008321.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: son:SO3890 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3852170 4253791 Shewmr4_3223 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_735348.1 3850581 R 60480 CDS YP_735349.1 113971556 4253792 complement(3852732..3853343) 1 NC_008321.1 KEGG: son:SO3892 hypothetical protein; hypothetical protein 3853343 4253792 Shewmr4_3224 Shewanella sp. MR-4 hypothetical protein YP_735349.1 3852732 R 60480 CDS YP_735350.1 113971557 4253793 3853511..3855142 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3894 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 3855142 4253793 Shewmr4_3225 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_735350.1 3853511 D 60480 CDS YP_735351.1 113971558 4253794 complement(3855285..3856103) 1 NC_008321.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: son:SO3895 HesA/MoeB/ThiF family protein; UBA/THIF-type NAD/FAD binding protein 3856103 4253794 Shewmr4_3226 Shewanella sp. MR-4 UBA/THIF-type NAD/FAD binding protein YP_735351.1 3855285 R 60480 CDS YP_735352.1 113971559 4253795 3856521..3857585 1 NC_008321.1 KEGG: son:SO3896 outer membrane porin, putative; outer membrane porin 3857585 4253795 Shewmr4_3227 Shewanella sp. MR-4 outer membrane porin YP_735352.1 3856521 D 60480 CDS YP_735353.1 113971560 4253796 3858016..3859086 1 NC_008321.1 PFAM: porin, Gram-negative type; KEGG: son:SO3896 outer membrane porin, putative; porin 3859086 4253796 Shewmr4_3228 Shewanella sp. MR-4 porin YP_735353.1 3858016 D 60480 CDS YP_735354.1 113971561 4253797 complement(3859248..3861524) 1 NC_008321.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3861524 4253797 Shewmr4_3229 Shewanella sp. MR-4 DNA topoisomerase IV subunit A YP_735354.1 3859248 R 60480 CDS YP_735355.1 113971562 4253798 complement(3861517..3862692) 1 NC_008321.1 KEGG: son:SO3898 L-sorbosone dehydrogenase, putative; L-sorbosone dehydrogenase 3862692 4253798 Shewmr4_3230 Shewanella sp. MR-4 L-sorbosone dehydrogenase YP_735355.1 3861517 R 60480 CDS YP_735356.1 113971563 4253799 complement(3862745..3864631) 1 NC_008321.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3864631 4253799 Shewmr4_3231 Shewanella sp. MR-4 DNA topoisomerase IV subunit B YP_735356.1 3862745 R 60480 CDS YP_735357.1 113971564 4253800 complement(3864688..3865263) 1 NC_008321.1 PFAM: protein of unknown function UPF0227; KEGG: son:SO3900 hypothetical protein; hypothetical protein 3865263 4253800 Shewmr4_3232 Shewanella sp. MR-4 hypothetical protein YP_735357.1 3864688 R 60480 CDS YP_735358.1 113971565 4253801 complement(3865290..3866129) 1 NC_008321.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; KEGG: son:SO3901 lacZ expression regulator; calcineurin phosphoesterase C-terminal domain-containing protein 3866129 4253801 Shewmr4_3233 Shewanella sp. MR-4 calcineurin phosphoesterase C-terminal domain-containing protein YP_735358.1 3865290 R 60480 CDS YP_735359.1 113971566 4253802 complement(3866145..3866597) 1 NC_008321.1 PFAM: protein of unknown function DUF1249; KEGG: son:SO3902 hypothetical protein; hypothetical protein 3866597 4253802 Shewmr4_3234 Shewanella sp. MR-4 hypothetical protein YP_735359.1 3866145 R 60480 CDS YP_735360.1 113971567 4253803 complement(3866590..3867201) 1 NC_008321.1 KEGG: son:SO3903 ADP-ribose pyrophosphatase; TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase; nucleoside diphosphate pyrophosphatase 3867201 4253803 Shewmr4_3235 Shewanella sp. MR-4 nucleoside diphosphate pyrophosphatase YP_735360.1 3866590 R 60480 CDS YP_735361.1 113971568 4253804 3867445..3868752 1 NC_008321.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3868752 tolC 4253804 tolC Shewanella sp. MR-4 outer membrane channel protein YP_735361.1 3867445 D 60480 CDS YP_735362.1 113971569 4253805 complement(3868825..3869520) 1 NC_008321.1 KEGG: son:SO3905 hypothetical protein; hypothetical protein 3869520 4253805 Shewmr4_3237 Shewanella sp. MR-4 hypothetical protein YP_735362.1 3868825 R 60480 CDS YP_735363.1 113971570 4253806 complement(3869565..3870533) 1 NC_008321.1 KEGG: son:SO3906 hypothetical protein; hypothetical protein 3870533 4253806 Shewmr4_3238 Shewanella sp. MR-4 hypothetical protein YP_735363.1 3869565 R 60480 CDS YP_735364.1 113971571 4253807 complement(3870545..3871027) 1 NC_008321.1 PFAM: protein of unknown function DUF461; KEGG: son:SO3907 hypothetical protein; hypothetical protein 3871027 4253807 Shewmr4_3239 Shewanella sp. MR-4 hypothetical protein YP_735364.1 3870545 R 60480 CDS YP_735365.1 113971572 4253808 3871062..3871799 1 NC_008321.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO3908 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase 3871799 4253808 Shewmr4_3240 Shewanella sp. MR-4 enoyl-CoA hydratase YP_735365.1 3871062 D 60480 CDS YP_735366.1 113971573 4253809 complement(3871937..3872137) 1 NC_008321.1 PFAM: PspC domain protein; KEGG: son:SO3909 hypothetical protein; phage shock protein C, PspC 3872137 4253809 Shewmr4_3241 Shewanella sp. MR-4 phage shock protein C, PspC YP_735366.1 3871937 R 60480 CDS YP_735367.1 113971574 4253810 complement(3872283..3872576) 1 NC_008321.1 KEGG: son:SO3910 hypothetical protein; hypothetical protein 3872576 4253810 Shewmr4_3242 Shewanella sp. MR-4 hypothetical protein YP_735367.1 3872283 R 60480 CDS YP_735368.1 113971575 4253811 complement(3872785..3873792) 1 NC_008321.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: son:SO3912 TIM-barrel protein, yjbN family; tRNA-dihydrouridine synthase A 3873792 4253811 Shewmr4_3243 Shewanella sp. MR-4 tRNA-dihydrouridine synthase A YP_735368.1 3872785 R 60480 CDS YP_735369.1 113971576 4253812 complement(3874020..3874694) 1 NC_008321.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO3913 putative hydroxylase; putative hydroxylase 3874694 4253812 Shewmr4_3244 Shewanella sp. MR-4 putative hydroxylase YP_735369.1 3874020 R 60480 CDS YP_735370.1 113971577 4253813 complement(3874770..3876965) 1 NC_008321.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO3914 TonB-dependent receptor, putative; TonB-dependent siderophore receptor 3876965 4253813 Shewmr4_3245 Shewanella sp. MR-4 TonB-dependent siderophore receptor YP_735370.1 3874770 R 60480 CDS YP_735371.1 113971578 4253814 3877523..3877987 1 NC_008321.1 KEGG: son:SO3915 putative chemotaxis protein CheX; putative chemotaxis protein CheX 3877987 4253814 Shewmr4_3246 Shewanella sp. MR-4 putative chemotaxis protein CheX YP_735371.1 3877523 D 60480 CDS YP_735372.1 113971579 4253815 complement(3878168..3879244) 1 NC_008321.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 3879244 alr 4253815 alr Shewanella sp. MR-4 alanine racemase YP_735372.1 3878168 R 60480 CDS YP_735373.1 113971580 4253816 complement(3879320..3880726) 1 NC_008321.1 KEGG: son:SO3917 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; primary replicative DNA helicase 3880726 4253816 Shewmr4_3248 Shewanella sp. MR-4 primary replicative DNA helicase YP_735373.1 3879320 R 60480 CDS YP_735374.1 113971581 4253817 3880852..3883050 1 NC_008321.1 KEGG: son:SO3918 hypothetical protein; dipeptidyl-peptidase 7 3883050 4253817 Shewmr4_3249 Shewanella sp. MR-4 dipeptidyl-peptidase 7 YP_735374.1 3880852 D 60480 CDS YP_735375.1 113971582 4253818 3883686..3884918 1 NC_008321.1 KEGG: son:SO3920 periplasmic Fe hydrogenase, large subunit; TIGRFAM: hydrogenases, Fe-only; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hydrogenase large subunit domain protein; hydrogenases, Fe-only 3884918 4253818 Shewmr4_3250 Shewanella sp. MR-4 hydrogenases, Fe-only YP_735375.1 3883686 D 60480 CDS YP_735376.1 113971583 4253819 3884931..3885251 1 NC_008321.1 PFAM: iron hydrogenase, small subunit; KEGG: son:SO3921 periplasmic Fe hydrogenase, small subunit; iron hydrogenase, small subunit 3885251 4253819 Shewmr4_3251 Shewanella sp. MR-4 iron hydrogenase, small subunit YP_735376.1 3884931 D 60480 CDS YP_735377.1 113971584 4253820 3885265..3885948 1 NC_008321.1 KEGG: son:SO3922 formate dehydrogenase, putative; formate dehydrogenase subunit gamma 3885948 4253820 Shewmr4_3252 Shewanella sp. MR-4 formate dehydrogenase subunit gamma YP_735377.1 3885265 D 60480 CDS YP_735378.1 113971585 4253821 3886019..3887458 1 NC_008321.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 3887458 thiH 4253821 thiH Shewanella sp. MR-4 thiamine biosynthesis protein ThiH YP_735378.1 3886019 D 60480 CDS YP_735379.1 113971586 4253822 3887459..3888097 1 NC_008321.1 KEGG: son:SO3924 hypothetical protein; hypothetical protein 3888097 4253822 Shewmr4_3254 Shewanella sp. MR-4 hypothetical protein YP_735379.1 3887459 D 60480 CDS YP_735380.1 113971587 4253823 3888097..3889176 1 NC_008321.1 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 3889176 4253823 Shewmr4_3255 Shewanella sp. MR-4 biotin synthase YP_735380.1 3888097 D 60480 CDS YP_735381.1 113971588 4253824 3889160..3890398 1 NC_008321.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: son:SO3926 GTP-binding protein; small GTP-binding protein 3890398 4253824 Shewmr4_3256 Shewanella sp. MR-4 small GTP-binding protein YP_735381.1 3889160 D 60480 CDS YP_735382.1 113971589 4253825 complement(3890562..3891014) 1 NC_008321.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3891014 rplI 4253825 rplI Shewanella sp. MR-4 50S ribosomal protein L9 YP_735382.1 3890562 R 60480 CDS YP_735383.1 113971590 4253826 complement(3891051..3891278) 1 NC_008321.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 3891278 rpsR 4253826 rpsR Shewanella sp. MR-4 30S ribosomal protein S18 YP_735383.1 3891051 R 60480 CDS YP_735384.1 113971591 4253827 complement(3891290..3891580) 1 NC_008321.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 3891580 4253827 Shewmr4_3259 Shewanella sp. MR-4 primosomal replication protein N YP_735384.1 3891290 R 60480 CDS YP_735385.1 113971592 4253828 complement(3891604..3891999) 1 NC_008321.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 3891999 rpsF 4253828 rpsF Shewanella sp. MR-4 30S ribosomal protein S6 YP_735385.1 3891604 R 60480 CDS YP_735386.1 113971593 4253829 3892212..3892967 1 NC_008321.1 PFAM: protein of unknown function DUF481; KEGG: son:SO3931 putative salt-induced outer membrane protein; hypothetical protein 3892967 4253829 Shewmr4_3261 Shewanella sp. MR-4 hypothetical protein YP_735386.1 3892212 D 60480 CDS YP_735387.1 113971594 4253830 3893148..3894578 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3933 hypothetical protein; major facilitator transporter 3894578 4253830 Shewmr4_3262 Shewanella sp. MR-4 major facilitator transporter YP_735387.1 3893148 D 60480 CDS YP_735388.1 113971595 4253831 complement(3894639..3895379) 1 NC_008321.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 3895379 4253831 Shewmr4_3263 Shewanella sp. MR-4 23S rRNA (guanosine-2'-O-)-methyltransferase YP_735388.1 3894639 R 60480 CDS YP_735389.1 113971596 4253832 complement(3895380..3897806) 1 NC_008321.1 KEGG: son:SO3935 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain protein; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; RNAse R 3897806 4253832 Shewmr4_3264 Shewanella sp. MR-4 RNAse R YP_735389.1 3895380 R 60480 CDS YP_735390.1 113971597 4253833 complement(3897846..3898502) 1 NC_008321.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO3936 sodium-type flagellar protein MotX; Sel1 domain-containing protein 3898502 4253833 Shewmr4_3265 Shewanella sp. MR-4 Sel1 domain-containing protein YP_735390.1 3897846 R 60480 CDS YP_735391.1 113971598 4253834 complement(3898611..3899906) 1 NC_008321.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 3899906 4253834 Shewmr4_3266 Shewanella sp. MR-4 adenylosuccinate synthetase YP_735391.1 3898611 R 60480 CDS YP_735392.1 113971599 4253835 complement(3899973..3900161) 1 NC_008321.1 KEGG: son:SO3938 hypothetical protein; hypothetical protein 3900161 4253835 Shewmr4_3267 Shewanella sp. MR-4 hypothetical protein YP_735392.1 3899973 R 60480 CDS YP_735393.1 113971600 4253836 complement(3900274..3900666) 1 NC_008321.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3900666 rpsI 4253836 rpsI Shewanella sp. MR-4 30S ribosomal protein S9 YP_735393.1 3900274 R 60480 CDS YP_735394.1 113971601 4253837 complement(3900681..3901109) 1 NC_008321.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3901109 rplM 4253837 rplM Shewanella sp. MR-4 50S ribosomal protein L13 YP_735394.1 3900681 R 60480 CDS YP_735395.1 113971602 4253838 complement(3901406..3902566) 1 NC_008321.1 PFAM: AFG1-family ATPase; KEGG: son:SO3941 hypothetical protein; AFG1 family ATPase 3902566 4253838 Shewmr4_3270 Shewanella sp. MR-4 AFG1 family ATPase YP_735395.1 3901406 R 60480 CDS YP_735396.1 113971603 4253839 3902971..3904323 1 NC_008321.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3942 serine protease, HtrA/DegQ/DegS family; peptidase Do 3904323 4253839 Shewmr4_3271 Shewanella sp. MR-4 peptidase Do YP_735396.1 3902971 D 60480 CDS YP_735397.1 113971604 4253840 3904449..3905531 1 NC_008321.1 TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3943 protease DegS; DegS serine peptidase 3905531 4253840 Shewmr4_3272 Shewanella sp. MR-4 DegS serine peptidase YP_735397.1 3904449 D 60480 CDS YP_735398.1 113971605 4253841 3906364..3908055 1 NC_008321.1 PFAM: protein of unknown function DUF342; KEGG: son:SO0826 hypothetical protein; hypothetical protein 3908055 4253841 Shewmr4_3273 Shewanella sp. MR-4 hypothetical protein YP_735398.1 3906364 D 60480 CDS YP_735399.1 113971606 4253842 3908298..3908675 1 NC_008321.1 KEGG: son:SO0824 hypothetical protein; hypothetical protein 3908675 4253842 Shewmr4_3274 Shewanella sp. MR-4 hypothetical protein YP_735399.1 3908298 D 60480 CDS YP_735400.1 113971607 4253843 3908865..3909989 1 NC_008321.1 PFAM: peptidase M50; KEGG: son:SO0823 hypothetical protein; peptidase M50 3909989 4253843 Shewmr4_3275 Shewanella sp. MR-4 peptidase M50 YP_735400.1 3908865 D 60480 CDS YP_735401.1 113971608 4253844 complement(3910250..3911692) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cps:CPS_0650 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 3911692 4253844 Shewmr4_3277 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_735401.1 3910250 R 60480 CDS YP_735402.1 113971609 4253845 complement(3911692..3912453) 1 NC_008321.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sde:Sde_3703 response regulator receiver domain protein (CheY-like); two component transcriptional regulator 3912453 4253845 Shewmr4_3278 Shewanella sp. MR-4 two component transcriptional regulator YP_735402.1 3911692 R 60480 CDS YP_735403.1 113971610 4253846 complement(3912514..3913224) 1 NC_008321.1 KEGG: cps:CPS_0652 hypothetical protein; hypothetical protein 3913224 4253846 Shewmr4_3279 Shewanella sp. MR-4 hypothetical protein YP_735403.1 3912514 R 60480 CDS YP_735404.1 113971611 4253847 complement(3913236..3913937) 1 NC_008321.1 KEGG: sde:Sde_3701 hypothetical protein; hypothetical protein 3913937 4253847 Shewmr4_3280 Shewanella sp. MR-4 hypothetical protein YP_735404.1 3913236 R 60480 CDS YP_735405.1 113971612 4253848 3914391..3915317 1 NC_008321.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: cps:CPS_0935 putative polyhydroxyalkanoate depolymerase; PHB depolymerase family esterase 3915317 4253848 Shewmr4_3281 Shewanella sp. MR-4 PHB depolymerase family esterase YP_735405.1 3914391 D 60480 CDS YP_735406.1 113971613 4253849 3915510..3917786 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_0936 TonB-dependent receptor; TonB-dependent receptor 3917786 4253849 Shewmr4_3282 Shewanella sp. MR-4 TonB-dependent receptor YP_735406.1 3915510 D 60480 CDS YP_735407.1 113971614 4253850 3917918..3918589 1 NC_008321.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: cps:CPS_0937 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 3918589 4253850 Shewmr4_3283 Shewanella sp. MR-4 two component LuxR family transcriptional regulator YP_735407.1 3917918 D 60480 CDS YP_735408.1 113971615 4253851 complement(3918688..3922194) 1 NC_008321.1 TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cps:CPS_0939 sensory box sensor histidine kinase/response regulator; multi-sensor hybrid histidine kinase 3922194 4253851 Shewmr4_3284 Shewanella sp. MR-4 multi-sensor hybrid histidine kinase YP_735408.1 3918688 R 60480 CDS YP_735409.1 113971616 4253852 3922352..3923527 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0940 major facilitator family transporter; major facilitator transporter 3923527 4253852 Shewmr4_3285 Shewanella sp. MR-4 major facilitator transporter YP_735409.1 3922352 D 60480 CDS YP_735410.1 113971617 4253853 3923530..3924519 1 NC_008321.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: cps:CPS_0941 putative lipase; alpha/beta hydrolase domain-containing protein 3924519 4253853 Shewmr4_3286 Shewanella sp. MR-4 alpha/beta hydrolase domain-containing protein YP_735410.1 3923530 D 60480 CDS YP_735411.1 113971618 4253854 complement(3924698..3926404) 1 NC_008321.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3926404 4253854 Shewmr4_3287 Shewanella sp. MR-4 amidase YP_735411.1 3924698 R 60480 CDS YP_735412.1 113971619 4253855 complement(3926482..3927594) 1 NC_008321.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 3927594 4253855 Shewmr4_3288 Shewanella sp. MR-4 agmatine deiminase YP_735412.1 3926482 R 60480 CDS YP_735413.1 113971620 4253856 complement(3927981..3930032) 1 NC_008321.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: bps:BPSL2073 poly(3-hydroxybutyrate) depolymerase precursor; PHB depolymerase family esterase 3930032 4253856 Shewmr4_3289 Shewanella sp. MR-4 PHB depolymerase family esterase YP_735413.1 3927981 R 60480 CDS YP_735414.1 113971621 4253857 complement(3930187..3931065) 1 NC_008321.1 PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: cps:CPS_0943 D-beta-hydroxybutyrate dehydrogenase; short-chain dehydrogenase/reductase SDR 3931065 4253857 Shewmr4_3290 Shewanella sp. MR-4 short-chain dehydrogenase/reductase SDR YP_735414.1 3930187 R 60480 CDS YP_735415.1 113971622 4253858 3931206..3931913 1 NC_008321.1 KEGG: cps:CPS_1598 3-oxoadipate CoA-succinyl transferase, alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 3931913 4253858 Shewmr4_3291 Shewanella sp. MR-4 3-oxoacid CoA-transferase subunit A YP_735415.1 3931206 D 60480 CDS YP_735416.1 113971623 4253859 3931923..3932582 1 NC_008321.1 KEGG: cps:CPS_1597 3-oxoadipate CoA-succinyl transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; butyryl-CoA:acetate CoA transferase 3932582 4253859 Shewmr4_3292 Shewanella sp. MR-4 butyryl-CoA:acetate CoA transferase YP_735416.1 3931923 D 60480 CDS YP_735417.1 113971624 4253860 complement(3932776..3933210) 1 NC_008321.1 hypothetical protein 3933210 4253860 Shewmr4_3293 Shewanella sp. MR-4 hypothetical protein YP_735417.1 3932776 R 60480 CDS YP_735418.1 113971625 4253861 complement(3933220..3933627) 1 NC_008321.1 hypothetical protein 3933627 4253861 Shewmr4_3294 Shewanella sp. MR-4 hypothetical protein YP_735418.1 3933220 R 60480 CDS YP_735419.1 113971626 4253862 complement(3934159..3934869) 1 NC_008321.1 hypothetical protein 3934869 4253862 Shewmr4_3295 Shewanella sp. MR-4 hypothetical protein YP_735419.1 3934159 R 60480 CDS YP_735420.1 113971627 4253863 complement(3935027..3935548) 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: sdn:Sden_3340 methylation; methylation site containing protein 3935548 4253863 Shewmr4_3296 Shewanella sp. MR-4 methylation site containing protein YP_735420.1 3935027 R 60480 CDS YP_735421.1 113971628 4253864 3935875..3936738 1 NC_008321.1 KEGG: ddi:DDB0220469 putative GATA-binding transcription factor; hypothetical protein 3936738 4253864 Shewmr4_3297 Shewanella sp. MR-4 hypothetical protein YP_735421.1 3935875 D 60480 CDS YP_735422.1 113971629 4253865 3936770..3937516 1 NC_008321.1 PFAM: Abortive infection protein; KEGG: rsp:RSP_2034 possible CAAX amino terminal protease family; abortive infection protein 3937516 4253865 Shewmr4_3298 Shewanella sp. MR-4 abortive infection protein YP_735422.1 3936770 D 60480 CDS YP_735423.1 113971630 4253866 complement(3937616..3939886) 1 NC_008321.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 3939886 4253866 Shewmr4_3299 Shewanella sp. MR-4 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase YP_735423.1 3937616 R 60480 CDS YP_735424.1 113971631 4253867 3940086..3940991 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0817 transcriptional activator protein MetR; LysR family transcriptional regulator 3940991 4253867 Shewmr4_3300 Shewanella sp. MR-4 LysR family transcriptional regulator YP_735424.1 3940086 D 60480 CDS YP_735425.1 113971632 4253868 complement(3941051..3941779) 1 NC_008321.1 KEGG: son:SO0816 hypothetical protein; putative signal transduction protein 3941779 4253868 Shewmr4_3301 Shewanella sp. MR-4 putative signal transduction protein YP_735425.1 3941051 R 60480 CDS YP_735426.1 113971633 4253869 complement(3942058..3944019) 1 NC_008321.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0815 TonB-dependent receptor C-terminal domain protein; TonB-dependent siderophore receptor 3944019 4253869 Shewmr4_3302 Shewanella sp. MR-4 TonB-dependent siderophore receptor YP_735426.1 3942058 R 60480 CDS YP_735427.1 113971634 4253870 complement(3944485..3945153) 1 NC_008321.1 KEGG: sdn:Sden_0728 hypothetical protein; hypothetical protein 3945153 4253870 Shewmr4_3303 Shewanella sp. MR-4 hypothetical protein YP_735427.1 3944485 R 60480 CDS YP_735428.1 113971635 4253871 complement(3945399..3946835) 1 NC_008321.1 KEGG: son:SO0813 hypothetical protein; hypothetical protein 3946835 4253871 Shewmr4_3304 Shewanella sp. MR-4 hypothetical protein YP_735428.1 3945399 R 60480 CDS YP_735429.1 113971636 4253872 complement(3946899..3948206) 1 NC_008321.1 KEGG: son:SO0812 hypothetical protein; hypothetical protein 3948206 4253872 Shewmr4_3305 Shewanella sp. MR-4 hypothetical protein YP_735429.1 3946899 R 60480 CDS YP_735430.1 113971637 4253873 3948408..3949364 1 NC_008321.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 3949364 rihA 4253873 rihA Shewanella sp. MR-4 ribonucleoside hydrolase 1 YP_735430.1 3948408 D 60480 CDS YP_735431.1 113971638 4253874 3949383..3950294 1 NC_008321.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 3950294 4253874 Shewmr4_3307 Shewanella sp. MR-4 ribokinase YP_735431.1 3949383 D 60480 CDS YP_735432.1 113971639 4253875 3950465..3950941 1 NC_008321.1 PFAM: blue (type 1) copper domain protein; KEGG: son:SO0809 azurin precursor; blue (type1) copper domain-containing protein 3950941 4253875 Shewmr4_3308 Shewanella sp. MR-4 blue (type1) copper domain-containing protein YP_735432.1 3950465 D 60480 CDS YP_735433.1 113971640 4253876 complement(3951086..3951391) 1 NC_008321.1 KEGG: son:SO0808 hypothetical protein; hypothetical protein 3951391 4253876 Shewmr4_3309 Shewanella sp. MR-4 hypothetical protein YP_735433.1 3951086 R 60480 CDS YP_735434.1 113971641 4253877 3951746..3953014 1 NC_008321.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sdn:Sden_0469 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3953014 4253877 Shewmr4_3310 Shewanella sp. MR-4 glycerophosphoryl diester phosphodiesterase YP_735434.1 3951746 D 60480 CDS YP_735435.1 113971642 4253878 complement(3953100..3953666) 1 NC_008321.1 KEGG: son:SO0807 hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase 3953666 4253878 Shewmr4_3311 Shewanella sp. MR-4 hypoxanthine-guanine phosphoribosyltransferase YP_735435.1 3953100 R 60480 CDS YP_735436.1 113971643 4253879 complement(3954000..3955766) 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Alkaline phosphatase; KEGG: son:SO0806 alkaline phosphatase, putative; twin-arginine translocation pathway signal 3955766 4253879 Shewmr4_3312 Shewanella sp. MR-4 twin-arginine translocation pathway signal YP_735436.1 3954000 R 60480 CDS YP_735437.1 113971644 4253880 3956037..3956462 1 NC_008321.1 PFAM: CBS domain containing protein; KEGG: son:SO0805 CBS domain protein; CBS domain-containing protein 3956462 4253880 Shewmr4_3313 Shewanella sp. MR-4 CBS domain-containing protein YP_735437.1 3956037 D 60480 CDS YP_735438.1 113971645 4253881 complement(3957194..3958564) 1 NC_008321.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO0802 MATE efflux family protein; MATE efflux family protein 3958564 4253881 Shewmr4_3315 Shewanella sp. MR-4 MATE efflux family protein YP_735438.1 3957194 R 60480 CDS YP_735439.1 113971646 4253882 3958867..3959781 1 NC_008321.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: son:SO0801 hypothetical protein; alpha/beta hydrolase domain-containing protein 3959781 4253882 Shewmr4_3316 Shewanella sp. MR-4 alpha/beta hydrolase domain-containing protein YP_735439.1 3958867 D 60480 CDS YP_735440.1 113971647 4253883 complement(3959876..3960358) 1 NC_008321.1 PFAM: protein of unknown function DUF985; KEGG: son:SO0799 hypothetical protein; hypothetical protein 3960358 4253883 Shewmr4_3317 Shewanella sp. MR-4 hypothetical protein YP_735440.1 3959876 R 60480 CDS YP_735441.1 113971648 4253884 3960502..3962664 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0798 hypothetical protein; TonB-dependent receptor 3962664 4253884 Shewmr4_3318 Shewanella sp. MR-4 TonB-dependent receptor YP_735441.1 3960502 D 60480 CDS YP_735442.1 113971649 4253885 3962664..3963125 1 NC_008321.1 KEGG: son:SO0797 hypothetical protein; hypothetical protein 3963125 4253885 Shewmr4_3319 Shewanella sp. MR-4 hypothetical protein YP_735442.1 3962664 D 60480 CDS YP_735443.1 113971650 4253886 3963420..3964328 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO0796 GGDEF family protein; diguanylate cyclase 3964328 4253886 Shewmr4_3320 Shewanella sp. MR-4 diguanylate cyclase YP_735443.1 3963420 D 60480 CDS YP_735444.1 113971651 4253887 complement(3964414..3966642) 1 NC_008321.1 TIGRFAM: uncharacterized domain; PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: sdn:Sden_0824 protein of unknown function DUF181; hypothetical protein 3966642 4253887 Shewmr4_3321 Shewanella sp. MR-4 hypothetical protein YP_735444.1 3964414 R 60480 CDS YP_735445.1 113971652 4253888 complement(3966807..3966986) 1 NC_008321.1 KEGG: son:SO0793 hypothetical protein; hypothetical protein 3966986 4253888 Shewmr4_3322 Shewanella sp. MR-4 hypothetical protein YP_735445.1 3966807 R 60480 CDS YP_735446.1 113971653 4253889 3967324..3968988 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: son:SO0987 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3968988 4253889 Shewmr4_3323 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_735446.1 3967324 D 60480 CDS YP_735447.1 113971654 4253890 complement(3969141..3969530) 1 NC_008321.1 KEGG: son:SO0792 hypothetical protein; hypothetical protein 3969530 4253890 Shewmr4_3324 Shewanella sp. MR-4 hypothetical protein YP_735447.1 3969141 R 60480 CDS YP_735448.1 113971655 4253891 3969919..3970164 1 NC_008321.1 KEGG: son:SO0788 hypothetical protein; hypothetical protein 3970164 4253891 Shewmr4_3325 Shewanella sp. MR-4 hypothetical protein YP_735448.1 3969919 D 60480 CDS YP_735449.1 113971656 4253892 3970528..3971454 1 NC_008321.1 KEGG: son:SO0784 hypothetical protein; hypothetical protein 3971454 4253892 Shewmr4_3326 Shewanella sp. MR-4 hypothetical protein YP_735449.1 3970528 D 60480 CDS YP_735450.1 113971657 4253893 3971496..3973208 1 NC_008321.1 KEGG: ecj:JW2609 hypothetical protein; hypothetical protein 3973208 4253893 Shewmr4_3327 Shewanella sp. MR-4 hypothetical protein YP_735450.1 3971496 D 60480 CDS YP_735451.1 113971658 4253894 3973198..3975351 1 NC_008321.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: ecj:JW2608 conserved hypothetical protein; DEAD/DEAH box helicase domain-containing protein 3975351 4253894 Shewmr4_3328 Shewanella sp. MR-4 DEAD/DEAH box helicase domain-containing protein YP_735451.1 3973198 D 60480 CDS YP_735452.1 113971659 4253895 complement(3975744..3978632) 1 NC_008321.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3978632 4253895 Shewmr4_3329 Shewanella sp. MR-4 glycine dehydrogenase YP_735452.1 3975744 R 60480 CDS YP_735453.1 113971660 4253896 complement(3978755..3979144) 1 NC_008321.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 3979144 4253896 Shewmr4_3330 Shewanella sp. MR-4 glycine cleavage system protein H YP_735453.1 3978755 R 60480 CDS YP_735454.1 113971661 4253897 complement(3979170..3980264) 1 NC_008321.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 3980264 gcvT 4253897 gcvT Shewanella sp. MR-4 glycine cleavage system aminomethyltransferase T YP_735454.1 3979170 R 60480 CDS YP_735455.1 113971662 4253898 complement(3980665..3981888) 1 NC_008321.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0778 oxidoreductase, FAD-binding, UbiH/Coq6 family; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 3981888 4253898 Shewmr4_3332 Shewanella sp. MR-4 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_735455.1 3980665 R 60480 CDS YP_735456.1 113971663 4253899 complement(3981925..3983148) 1 NC_008321.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0777 2-octaprenyl-6-methoxyphenol hydroxylase; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase 3983148 4253899 Shewmr4_3333 Shewanella sp. MR-4 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase YP_735456.1 3981925 R 60480 CDS YP_735457.1 113971664 4253900 complement(3983254..3983829) 1 NC_008321.1 TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: son:SO0776 hypothetical protein; yecA family protein 3983829 4253900 Shewmr4_3334 Shewanella sp. MR-4 yecA family protein YP_735457.1 3983254 R 60480 CDS YP_735458.1 113971665 4253901 3984055..3984357 1 NC_008321.1 PFAM: protein of unknown function DUF710; KEGG: son:SO0775 hypothetical protein; cell division protein ZapA 3984357 4253901 Shewmr4_3335 Shewanella sp. MR-4 cell division protein ZapA YP_735458.1 3984055 D 60480 CDS YP_735459.1 113971666 4253902 3984661..3985335 1 NC_008321.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: son:SO0774 5-formyltetrahydrofolate cyclo-ligase family protein; 5-formyltetrahydrofolate cyclo-ligase 3985335 4253902 Shewmr4_3336 Shewanella sp. MR-4 5-formyltetrahydrofolate cyclo-ligase YP_735459.1 3984661 D 60480 CDS YP_735460.1 113971667 4253903 complement(3985475..3986194) 1 NC_008321.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO0772 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 3986194 4253903 Shewmr4_3337 Shewanella sp. MR-4 short chain dehydrogenase YP_735460.1 3985475 R 60480 CDS YP_735461.1 113971668 4253904 3986405..3986794 1 NC_008321.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: son:SO0771 hypothetical protein; putative thiol-disulfide oxidoreductase DCC 3986794 4253904 Shewmr4_3338 Shewanella sp. MR-4 putative thiol-disulfide oxidoreductase DCC YP_735461.1 3986405 D 60480 CDS YP_735462.1 113971669 4253905 complement(3986874..3987809) 1 NC_008321.1 oxidizes malate to oxaloacetate; malate dehydrogenase 3987809 4253905 Shewmr4_3339 Shewanella sp. MR-4 malate dehydrogenase YP_735462.1 3986874 R 60480 CDS YP_735463.1 113971670 4253906 3988100..3988570 1 NC_008321.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 3988570 4253906 Shewmr4_3340 Shewanella sp. MR-4 arginine repressor YP_735463.1 3988100 D 60480 CDS YP_735464.1 113971671 4253907 complement(3988823..3989455) 1 NC_008321.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: son:SO0768 putative NADH-flavin reductase; NAD-dependent epimerase/dehydratase 3989455 4253907 Shewmr4_3341 Shewanella sp. MR-4 NAD-dependent epimerase/dehydratase YP_735464.1 3988823 R 60480 CDS YP_735465.1 113971672 4253908 3989559..3990461 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sdn:Sden_2893 LysR, substrate-binding; LysR family transcriptional regulator 3990461 4253908 Shewmr4_3342 Shewanella sp. MR-4 LysR family transcriptional regulator YP_735465.1 3989559 D 60480 CDS YP_735466.1 113971673 4253909 complement(3990526..3991467) 1 NC_008321.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: son:SO0740 melanin biosynthesis protein TyrA, putative; Dyp-type peroxidase family protein 3991467 4253909 Shewmr4_3343 Shewanella sp. MR-4 Dyp-type peroxidase family protein YP_735466.1 3990526 R 60480 CDS YP_735467.1 113971674 4253910 complement(3991674..3993386) 1 NC_008321.1 KEGG: son:SO0741 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2 3993386 4253910 Shewmr4_3344 Shewanella sp. MR-4 gamma-glutamyltransferase 2 YP_735467.1 3991674 R 60480 CDS YP_735468.1 113971675 4253911 complement(3993526..3994575) 1 NC_008321.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: son:SO0742 iron(III) ABC transporter, ATP-binding protein; ABC transporter-like protein 3994575 4253911 Shewmr4_3345 Shewanella sp. MR-4 ABC transporter-like protein YP_735468.1 3993526 R 60480 CDS YP_735469.1 113971676 4253912 complement(3994572..3996206) 1 NC_008321.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO0743 iron(III) ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 3996206 4253912 Shewmr4_3346 Shewanella sp. MR-4 binding-protein-dependent transport systems inner membrane component YP_735469.1 3994572 R 60480 CDS YP_735470.1 113971677 4253913 complement(3996296..3997303) 1 NC_008321.1 PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO0744 iron(III) ABC transporter, periplasmic iron(III)-binding protein; extracellular solute-binding protein 3997303 4253913 Shewmr4_3347 Shewanella sp. MR-4 extracellular solute-binding protein YP_735470.1 3996296 R 60480 CDS YP_735471.1 113971678 4253914 3997522..3997944 1 NC_008321.1 KEGG: son:SO0745 hypothetical protein; hypothetical protein 3997944 4253914 Shewmr4_3348 Shewanella sp. MR-4 hypothetical protein YP_735471.1 3997522 D 60480 CDS YP_735472.1 113971679 4253915 complement(3997952..3998548) 1 NC_008321.1 PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO0746 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 3998548 4253915 Shewmr4_3349 Shewanella sp. MR-4 glutathione S-transferase domain-containing protein YP_735472.1 3997952 R 60480 CDS YP_735473.1 113971680 4253916 complement(3998619..3999368) 1 NC_008321.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO0747 ferredoxin--NADP reductase; oxidoreductase FAD/NAD(P)-binding subunit 3999368 4253916 Shewmr4_3350 Shewanella sp. MR-4 oxidoreductase FAD/NAD(P)-binding subunit YP_735473.1 3998619 R 60480 CDS YP_735474.1 113971681 4253917 complement(3999498..4000190) 1 NC_008321.1 KEGG: son:SO0748 hypothetical protein; hypothetical protein 4000190 4253917 Shewmr4_3351 Shewanella sp. MR-4 hypothetical protein YP_735474.1 3999498 R 60480 CDS YP_735475.1 113971682 4253918 4000276..4000869 1 NC_008321.1 PFAM: Phosphoglycerate mutase; KEGG: son:SO0749 hypothetical protein; phosphoglycerate mutase 4000869 4253918 Shewmr4_3352 Shewanella sp. MR-4 phosphoglycerate mutase YP_735475.1 4000276 D 60480 CDS YP_735476.1 113971683 4253919 4000881..4002371 1 NC_008321.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: son:SO0750 glutamate synthase, putative; ferredoxin-dependent glutamate synthase 4002371 4253919 Shewmr4_3353 Shewanella sp. MR-4 ferredoxin-dependent glutamate synthase YP_735476.1 4000881 D 60480 CDS YP_735477.1 113971684 4253920 4002516..4002722 1 NC_008321.1 KEGG: son:SO0752 hypothetical protein; hypothetical protein 4002722 4253920 Shewmr4_3354 Shewanella sp. MR-4 hypothetical protein YP_735477.1 4002516 D 60480 CDS YP_735478.1 113971685 4253921 complement(4002763..4003020) 1 NC_008321.1 KEGG: son:SO0753 hypothetical protein; hypothetical protein 4003020 4253921 Shewmr4_3355 Shewanella sp. MR-4 hypothetical protein YP_735478.1 4002763 R 60480 CDS YP_735479.1 113971686 4253922 complement(4003137..4004921) 1 NC_008321.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0754 ABC transporter, ATP-binding protein; ABC transporter-like protein 4004921 4253922 Shewmr4_3356 Shewanella sp. MR-4 ABC transporter-like protein YP_735479.1 4003137 R 60480 CDS YP_735480.1 113971687 4253923 4005370..4005546 1 NC_008321.1 KEGG: son:SO0755 hypothetical protein; hypothetical protein 4005546 4253923 Shewmr4_3357 Shewanella sp. MR-4 hypothetical protein YP_735480.1 4005370 D 60480 CDS YP_735481.1 113971688 4253924 complement(4005597..4006655) 1 NC_008321.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 4006655 4253924 Shewmr4_3358 Shewanella sp. MR-4 phospho-2-dehydro-3-deoxyheptonate aldolase YP_735481.1 4005597 R 60480 CDS YP_735482.1 113971689 4253925 complement(4006963..4008150) 1 NC_008321.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0757 TPR domain protein; TPR repeat-containing protein 4008150 4253925 Shewmr4_3359 Shewanella sp. MR-4 TPR repeat-containing protein YP_735482.1 4006963 R 60480 CDS YP_735483.1 113971690 4253926 complement(4008269..4008616) 1 NC_008321.1 KEGG: son:SO0758 hypothetical protein; hypothetical protein 4008616 4253926 Shewmr4_3360 Shewanella sp. MR-4 hypothetical protein YP_735483.1 4008269 R 60480 CDS YP_735484.1 113971691 4253927 complement(4008733..4009983) 1 NC_008321.1 PFAM: Rh family protein/ammonium transporter; KEGG: son:SO0760 ammonium transporter; Rh family protein/ammonium transporter 4009983 4253927 Shewmr4_3361 Shewanella sp. MR-4 Rh family protein/ammonium transporter YP_735484.1 4008733 R 60480 CDS YP_735485.1 113971692 4253928 complement(4009994..4010332) 1 NC_008321.1 PFAM: nitrogen regulatory protein P-II; KEGG: son:SO0761 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II 4010332 4253928 Shewmr4_3362 Shewanella sp. MR-4 nitrogen regulatory protein P-II YP_735485.1 4009994 R 60480 CDS YP_735486.1 113971693 4253929 4010641..4011183 1 NC_008321.1 PFAM: isochorismatase hydrolase; KEGG: son:SO0762 isochorismatase family protein; isochorismatase hydrolase 4011183 4253929 Shewmr4_3363 Shewanella sp. MR-4 isochorismatase hydrolase YP_735486.1 4010641 D 60480 CDS YP_735487.1 113971694 4253930 complement(4011234..4011968) 1 NC_008321.1 KEGG: ppr:PBPRA1347 hypothetical protein; hypothetical protein 4011968 4253930 Shewmr4_3364 Shewanella sp. MR-4 hypothetical protein YP_735487.1 4011234 R 60480 CDS YP_735488.1 113971695 4253931 complement(4012068..4012877) 1 NC_008321.1 KEGG: son:SO0764 hypothetical protein; hypothetical protein 4012877 4253931 Shewmr4_3365 Shewanella sp. MR-4 hypothetical protein YP_735488.1 4012068 R 60480 CDS YP_735489.1 113971696 4253932 complement(4013011..4013715) 1 NC_008321.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO0765 threonine efflux protein, putative; lysine exporter protein LysE/YggA 4013715 4253932 Shewmr4_3366 Shewanella sp. MR-4 lysine exporter protein LysE/YggA YP_735489.1 4013011 R 60480 CDS YP_735490.1 113971697 4253933 complement(4013807..4014637) 1 NC_008321.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO0766 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 4014637 4253933 Shewmr4_3367 Shewanella sp. MR-4 AraC family transcriptional regulator YP_735490.1 4013807 R 60480 CDS YP_735491.1 113971698 4253934 complement(4014790..4015536) 1 NC_008321.1 KEGG: son:SO0766.1 hypothetical protein; hypothetical protein 4015536 4253934 Shewmr4_3368 Shewanella sp. MR-4 hypothetical protein YP_735491.1 4014790 R 60480 CDS YP_735492.1 113971699 4253935 complement(4015645..4017285) 1 NC_008321.1 PFAM: Alkaline phosphatase; KEGG: cps:CPS_3933 alkaline phosphatase family protein; alkaline phosphatase 4017285 4253935 Shewmr4_3369 Shewanella sp. MR-4 alkaline phosphatase YP_735492.1 4015645 R 60480 CDS YP_735493.1 113971700 4253936 complement(4017328..4018824) 1 NC_008321.1 PFAM: Alkaline phosphatase; KEGG: cps:CPS_3932 alkaline phosphatase family protein; alkaline phosphatase 4018824 4253936 Shewmr4_3370 Shewanella sp. MR-4 alkaline phosphatase YP_735493.1 4017328 R 60480 CDS YP_735494.1 113971701 4253937 4019178..4020005 1 NC_008321.1 KEGG: son:SO0736 conserved hypothetical protein; hypothetical protein 4020005 4253937 Shewmr4_3371 Shewanella sp. MR-4 hypothetical protein YP_735494.1 4019178 D 60480 CDS YP_735495.1 113971702 4253938 4020260..4022239 1 NC_008321.1 KEGG: mag:amb2980 hypothetical 918 kDa protein Y4LL; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold domain protein; SMART: PAS domain containing protein; diguanylate cyclase with PAS/PAC sensor 4022239 4253938 Shewmr4_3372 Shewanella sp. MR-4 diguanylate cyclase with PAS/PAC sensor YP_735495.1 4020260 D 60480 CDS YP_735496.1 113971703 4253939 4022325..4022882 1 NC_008321.1 PFAM: Cold-shock protein, DNA-binding; Excalibur domain protein; SMART: Cold shock protein; KEGG: son:SO0733 cold shock domain family protein; cold-shock DNA-binding protein family protein 4022882 4253939 Shewmr4_3373 Shewanella sp. MR-4 cold-shock DNA-binding protein family protein YP_735496.1 4022325 D 60480 CDS YP_735497.1 113971704 4253940 complement(4022985..4027901) 1 NC_008321.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO4539 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 4027901 4253940 Shewmr4_3374 Shewanella sp. MR-4 peptidase S8/S53 subtilisin kexin sedolisin YP_735497.1 4022985 R 60480 CDS YP_735498.1 113971705 4253941 4028162..4028524 1 NC_008321.1 PFAM: Thioredoxin domain; KEGG: son:SO0732 hypothetical protein; thioredoxin domain-containing protein 4028524 4253941 Shewmr4_3375 Shewanella sp. MR-4 thioredoxin domain-containing protein YP_735498.1 4028162 D 60480 CDS YP_735499.1 113971706 4253942 complement(4028670..4029242) 1 NC_008321.1 hypothetical protein 4029242 4253942 Shewmr4_3376 Shewanella sp. MR-4 hypothetical protein YP_735499.1 4028670 R 60480 CDS YP_735500.1 113971707 4253943 complement(4029586..4031073) 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0726 ABC transporter, ATP-binding protein; ABC transporter-like protein 4031073 4253943 Shewmr4_3377 Shewanella sp. MR-4 ABC transporter-like protein YP_735500.1 4029586 R 60480 CDS YP_735501.1 113971708 4253944 complement(4031170..4031910) 1 NC_008321.1 KEGG: neu:NE1275 hypothetical protein; hypothetical protein 4031910 4253944 Shewmr4_3378 Shewanella sp. MR-4 hypothetical protein YP_735501.1 4031170 R 60480 CDS YP_735502.1 113971709 4253945 complement(4032116..4034335) 1 NC_008321.1 KEGG: son:SO0725 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 4034335 4253945 Shewmr4_3379 Shewanella sp. MR-4 catalase/peroxidase HPI YP_735502.1 4032116 R 60480 CDS YP_735503.1 113971710 4253946 4034704..4034955 1 NC_008321.1 KEGG: son:SO0721 hypothetical protein; hypothetical protein 4034955 4253946 Shewmr4_3380 Shewanella sp. MR-4 hypothetical protein YP_735503.1 4034704 D 60480 CDS YP_735504.1 113971711 4253947 4035138..4035671 1 NC_008321.1 KEGG: son:SO0720 hypothetical protein; hypothetical protein 4035671 4253947 Shewmr4_3381 Shewanella sp. MR-4 hypothetical protein YP_735504.1 4035138 D 60480 CDS YP_735505.1 113971712 4253948 complement(4035852..4036256) 1 NC_008321.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pae:PA4486 4-carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase 4036256 4253948 Shewmr4_3382 Shewanella sp. MR-4 4-carboxymuconolactone decarboxylase YP_735505.1 4035852 R 60480 CDS YP_735506.1 113971713 4253949 complement(4036445..4037428) 1 NC_008321.1 KEGG: vpa:VP0621 putative nonspecific acid phosphatase precursor; putative nonspecific acid phosphatase precursor 4037428 4253949 Shewmr4_3383 Shewanella sp. MR-4 putative nonspecific acid phosphatase precursor YP_735506.1 4036445 R 60480 CDS YP_735507.1 113971714 4253950 complement(4037463..4038890) 1 NC_008321.1 KEGG: vpa:VPA0690 hypothetical protein; hypothetical protein 4038890 4253950 Shewmr4_3384 Shewanella sp. MR-4 hypothetical protein YP_735507.1 4037463 R 60480 CDS YP_735508.1 113971715 4253951 complement(4038887..4040608) 1 NC_008321.1 PFAM: von Willebrand factor, type A; KEGG: vfi:VF1421 transporter; von Willebrand factor, type A 4040608 4253951 Shewmr4_3385 Shewanella sp. MR-4 von Willebrand factor, type A YP_735508.1 4038887 R 60480 CDS YP_735509.1 113971716 4253952 complement(4040601..4041608) 1 NC_008321.1 PFAM: von Willebrand factor, type A; KEGG: vpa:VPA0688 hypothetical protein; von Willebrand factor, type A 4041608 4253952 Shewmr4_3386 Shewanella sp. MR-4 von Willebrand factor, type A YP_735509.1 4040601 R 60480 CDS YP_735510.1 113971717 4253953 complement(4041595..4042113) 1 NC_008321.1 KEGG: vpa:VPA0687 hypothetical protein; hypothetical protein 4042113 4253953 Shewmr4_3387 Shewanella sp. MR-4 hypothetical protein YP_735510.1 4041595 R 60480 CDS YP_735511.1 113971718 4253954 complement(4042110..4043105) 1 NC_008321.1 PFAM: protein of unknown function DUF58; KEGG: vpa:VPA0686 hypothetical protein; hypothetical protein 4043105 4253954 Shewmr4_3388 Shewanella sp. MR-4 hypothetical protein YP_735511.1 4042110 R 60480 CDS YP_735512.1 113971719 4253955 complement(4043111..4044112) 1 NC_008321.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: vpa:VPA0685 MoxR-related protein; ATPase 4044112 4253955 Shewmr4_3389 Shewanella sp. MR-4 ATPase YP_735512.1 4043111 R 60480 CDS YP_735513.1 113971720 4253956 complement(4044096..4045403) 1 NC_008321.1 PFAM: Radical SAM domain protein; KEGG: vpa:VPA0684 putative arylsulfatase regulator; radical SAM domain-containing protein 4045403 4253956 Shewmr4_3390 Shewanella sp. MR-4 radical SAM domain-containing protein YP_735513.1 4044096 R 60480 CDS YP_735514.1 113971721 4253957 complement(4045472..4046989) 1 NC_008321.1 PFAM: sulfatase; KEGG: vpa:VPA0683 putative arylsulfatase protein; sulfatase 4046989 4253957 Shewmr4_3391 Shewanella sp. MR-4 sulfatase YP_735514.1 4045472 R 60480 CDS YP_735515.1 113971722 4253958 4047142..4047987 1 NC_008321.1 PFAM: regulatory protein, LysR; KEGG: vvu:VV20150 transcriptional regulator; LysR family transcriptional regulator 4047987 4253958 Shewmr4_3392 Shewanella sp. MR-4 LysR family transcriptional regulator YP_735515.1 4047142 D 60480 CDS YP_735516.1 113971723 4253959 complement(4048160..4051807) 1 NC_008321.1 TIGRFAM: putative outer membrane adhesin like protein; PFAM: von Willebrand factor, type A; KEGG: tcx:Tcr_0105 VCBS; putative outer membrane adhesin like protein 4051807 4253959 Shewmr4_3393 Shewanella sp. MR-4 putative outer membrane adhesin like protein YP_735516.1 4048160 R 60480 CDS YP_735517.1 113971724 4253960 complement(4051804..4052400) 1 NC_008321.1 hypothetical protein 4052400 4253960 Shewmr4_3394 Shewanella sp. MR-4 hypothetical protein YP_735517.1 4051804 R 60480 CDS YP_735518.1 113971725 4253961 complement(4053198..4054499) 1 NC_008321.1 PFAM: HipA domain protein; KEGG: son:SO0706 hypothetical protein; HipA domain-containing protein 4054499 4253961 Shewmr4_3395 Shewanella sp. MR-4 HipA domain-containing protein YP_735518.1 4053198 R 60480 CDS YP_735519.1 113971726 4253962 complement(4054503..4054796) 1 NC_008321.1 PFAM: helix-turn-helix domain protein; KEGG: son:SO0705 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 4054796 4253962 Shewmr4_3396 Shewanella sp. MR-4 XRE family transcriptional regulator YP_735519.1 4054503 R 60480 CDS YP_735520.1 113971727 4253963 complement(4055174..4056811) 1 NC_008321.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 4056811 groEL 4253963 groEL Shewanella sp. MR-4 chaperonin GroEL YP_735520.1 4055174 R 60480 CDS YP_735521.1 113971728 4253964 complement(4056869..4057159) 1 NC_008321.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4057159 groES 4253964 groES Shewanella sp. MR-4 co-chaperonin GroES YP_735521.1 4056869 R 60480 CDS YP_735522.1 113971729 4253965 4057387..4058745 1 NC_008321.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO0702 MATE efflux family protein; MATE efflux family protein 4058745 4253965 Shewmr4_3399 Shewanella sp. MR-4 MATE efflux family protein YP_735522.1 4057387 D 60480 CDS YP_735523.1 113971730 4253966 complement(4058833..4059825) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0701 transcriptional regulator, LysR family; LysR family transcriptional regulator 4059825 4253966 Shewmr4_3400 Shewanella sp. MR-4 LysR family transcriptional regulator YP_735523.1 4058833 R 60480 CDS YP_735524.1 113971731 4253967 4059955..4061037 1 NC_008321.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRA2319 hypothetical membrane-fusion protein; RND family efflux transporter MFP subunit 4061037 4253967 Shewmr4_3401 Shewanella sp. MR-4 RND family efflux transporter MFP subunit YP_735524.1 4059955 D 60480 CDS YP_735525.1 113971732 4253968 4061041..4064130 1 NC_008321.1 PFAM: acriflavin resistance protein; KEGG: ppr:PBPRA2318 hypothetical transporter, AcrB/D/F family; acriflavin resistance protein 4064130 4253968 Shewmr4_3402 Shewanella sp. MR-4 acriflavin resistance protein YP_735525.1 4061041 D 60480 CDS YP_735526.1 113971733 4253969 complement(4064312..4064695) 1 NC_008321.1 KEGG: son:SO0699 hypothetical protein; hypothetical protein 4064695 4253969 Shewmr4_3403 Shewanella sp. MR-4 hypothetical protein YP_735526.1 4064312 R 60480 CDS YP_735527.1 113971734 4253970 complement(4064886..4065506) 1 NC_008321.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: son:SO0698 FxsA protein; FxsA cytoplasmic membrane protein 4065506 4253970 Shewmr4_3404 Shewanella sp. MR-4 FxsA cytoplasmic membrane protein YP_735527.1 4064886 R 60480 CDS YP_735528.1 113971735 4253971 4065730..4066053 1 NC_008321.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: son:SO0697 periplasmic divalent cation tolerance protein CutA; CutA1 divalent ion tolerance protein 4066053 4253971 Shewmr4_3405 Shewanella sp. MR-4 CutA1 divalent ion tolerance protein YP_735528.1 4065730 D 60480 CDS YP_735529.1 113971736 4253972 4066050..4067891 1 NC_008321.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein precursor 4067891 dipZ 4253972 dipZ Shewanella sp. MR-4 thiol:disulfide interchange protein precursor YP_735529.1 4066050 D 60480 CDS YP_735530.1 113971737 4253973 4068044..4069681 1 NC_008321.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: son:SO0695 glutathione-regulated potassium-efflux system protein KefC, putative; sodium/hydrogen exchanger 4069681 4253973 Shewmr4_3407 Shewanella sp. MR-4 sodium/hydrogen exchanger YP_735530.1 4068044 D 60480 CDS YP_735531.1 113971738 4253974 4069966..4071111 1 NC_008321.1 KEGG: son:SO0694 galactokinase; TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; galactokinase 4071111 4253974 Shewmr4_3408 Shewanella sp. MR-4 galactokinase YP_735531.1 4069966 D 60480 CDS YP_735532.1 113971739 4253975 4071229..4072260 1 NC_008321.1 PFAM: Aldose 1-epimerase; KEGG: son:SO0693 aldose 1-epimerase; aldose 1-epimerase 4072260 4253975 Shewmr4_3409 Shewanella sp. MR-4 aldose 1-epimerase YP_735532.1 4071229 D 60480 CDS YP_735533.1 113971740 4253976 complement(4072370..4072774) 1 NC_008321.1 KEGG: son:SO0691 hypothetical protein; hypothetical protein 4072774 4253976 Shewmr4_3410 Shewanella sp. MR-4 hypothetical protein YP_735533.1 4072370 R 60480 CDS YP_735534.1 113971741 4253977 complement(4073097..4074095) 1 NC_008321.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0640 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase 4074095 4253977 Shewmr4_3411 Shewanella sp. MR-4 alcohol dehydrogenase YP_735534.1 4073097 R 60480 CDS YP_735535.1 113971742 4253978 complement(4074258..4076039) 1 NC_008321.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4013 hypothetical protein; Sel1 domain-containing protein 4076039 4253978 Shewmr4_3412 Shewanella sp. MR-4 Sel1 domain-containing protein YP_735535.1 4074258 R 60480 CDS YP_735536.1 113971743 4253979 complement(4076133..4077476) 1 NC_008321.1 PFAM: protein kinase; leucine-rich repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein, typical subtype; KEGG: son:SO4016 hypothetical protein; serine/threonine protein kinase 4077476 4253979 Shewmr4_3413 Shewanella sp. MR-4 serine/threonine protein kinase YP_735536.1 4076133 R 60480 CDS YP_735537.1 113971744 4253980 4077645..4079069 1 NC_008321.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: son:SO4017 transglycosylase, Slt family; MltD domain-containing protein 4079069 4253980 Shewmr4_3414 Shewanella sp. MR-4 MltD domain-containing protein YP_735537.1 4077645 D 60480 CDS YP_735538.1 113971745 4253981 complement(4079134..4080507) 1 NC_008321.1 KEGG: son:SO4018 hypothetical protein; hypothetical protein 4080507 4253981 Shewmr4_3415 Shewanella sp. MR-4 hypothetical protein YP_735538.1 4079134 R 60480 CDS YP_735539.1 113971746 4253982 4080866..4083583 1 NC_008321.1 KEGG: son:SO4019 hypothetical protein; hypothetical protein 4083583 4253982 Shewmr4_3416 Shewanella sp. MR-4 hypothetical protein YP_735539.1 4080866 D 60480 CDS YP_735540.1 113971747 4253983 complement(4083745..4086519) 1 NC_008321.1 PFAM: peptidase M16 domain protein; KEGG: son:SO4022 peptidase, M16 family; peptidase M16 domain-containing protein 4086519 4253983 Shewmr4_3417 Shewanella sp. MR-4 peptidase M16 domain-containing protein YP_735540.1 4083745 R 60480 CDS YP_735541.1 113971748 4253984 complement(4086751..4087314) 1 NC_008321.1 KEGG: son:SO4027 hypothetical protein; hypothetical protein 4087314 4253984 Shewmr4_3418 Shewanella sp. MR-4 hypothetical protein YP_735541.1 4086751 R 60480 CDS YP_735542.1 113971749 4253985 complement(4087443..4088153) 1 NC_008321.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: son:SO4028 single-strand binding protein; single-strand binding protein 4088153 4253985 Shewmr4_3419 Shewanella sp. MR-4 single-strand binding protein YP_735542.1 4087443 R 60480 CDS YP_735543.1 113971750 4253986 complement(4088261..4089628) 1 NC_008321.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4029 transporter, putative; major facilitator transporter 4089628 4253986 Shewmr4_3420 Shewanella sp. MR-4 major facilitator transporter YP_735543.1 4088261 R 60480 CDS YP_735544.1 113971751 4253987 4090039..4092891 1 NC_008321.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: son:SO4030 excinuclease ABC, A subunit; excinuclease ABC subunit A 4092891 4253987 Shewmr4_3421 Shewanella sp. MR-4 excinuclease ABC subunit A YP_735544.1 4090039 D 60480 CDS YP_735545.1 113971752 4253988 4093004..4093342 1 NC_008321.1 KEGG: son:SO4031 hypothetical protein; hypothetical protein 4093342 4253988 Shewmr4_3422 Shewanella sp. MR-4 hypothetical protein YP_735545.1 4093004 D 60480 CDS YP_735546.1 113971753 4253989 4093427..4094467 1 NC_008321.1 PFAM: peptidase M20; peptidase M28; KEGG: son:SO4032 hypothetical protein; peptidase M28 4094467 4253989 Shewmr4_3423 Shewanella sp. MR-4 peptidase M28 YP_735546.1 4093427 D 60480 CDS YP_735547.1 113971754 4253990 4094664..4096532 1 NC_008321.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO4034 ATP-dependent RNA helicase DeaD; DEAD/DEAH box helicase domain-containing protein 4096532 4253990 Shewmr4_3424 Shewanella sp. MR-4 DEAD/DEAH box helicase domain-containing protein YP_735547.1 4094664 D 60480 CDS YP_735548.1 113971755 4253991 4096924..4097292 1 NC_008321.1 KEGG: son:SO4035 hypothetical protein; hypothetical protein 4097292 4253991 Shewmr4_3425 Shewanella sp. MR-4 hypothetical protein YP_735548.1 4096924 D 60480 CDS YP_735549.1 113971756 4253992 complement(4097327..4097938) 1 NC_008321.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO4039 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 4097938 4253992 Shewmr4_3426 Shewanella sp. MR-4 HAD family hydrolase YP_735549.1 4097327 R 60480 CDS YP_735550.1 113971757 4253993 complement(4097968..4098957) 1 NC_008321.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4040 integral membrane domain protein; hypothetical protein 4098957 4253993 Shewmr4_3427 Shewanella sp. MR-4 hypothetical protein YP_735550.1 4097968 R 60480 CDS YP_735551.1 113971758 4253994 4099277..4100119 1 NC_008321.1 KEGG: son:SO4042 hydratase/decarboxylase family protein; hydratase/decarboxylase family protein 4100119 4253994 Shewmr4_3428 Shewanella sp. MR-4 hydratase/decarboxylase family protein YP_735551.1 4099277 D 60480 CDS YP_735552.1 113971759 4253995 4100243..4101358 1 NC_008321.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO4043 TonB domain protein; TonB family protein 4101358 4253995 Shewmr4_3429 Shewanella sp. MR-4 TonB family protein YP_735552.1 4100243 D 60480 CDS YP_735553.1 113971760 4253996 complement(4101363..4101836) 1 NC_008321.1 KEGG: son:SO4044 hypothetical protein; hypothetical protein 4101836 4253996 Shewmr4_3430 Shewanella sp. MR-4 hypothetical protein YP_735553.1 4101363 R 60480 CDS YP_735554.1 113971761 4253997 complement(4103429..4104484) 1 NC_008321.1 PFAM: cytochrome c, class I; KEGG: son:SO4047 cytochrome c family protein; cytochrome c, class I 4104484 4253997 Shewmr4_3431 Shewanella sp. MR-4 cytochrome c, class I YP_735554.1 4103429 R 60480 CDS YP_735555.1 113971762 4253998 complement(4104495..4105121) 1 NC_008321.1 KEGG: son:SO4048 cytochrome c family protein; cytochrome c family protein 4105121 4253998 Shewmr4_3432 Shewanella sp. MR-4 cytochrome c family protein YP_735555.1 4104495 R 60480 CDS YP_735556.1 113971763 4253999 complement(4105312..4106340) 1 NC_008321.1 KEGG: son:SO4050 hypothetical protein; hypothetical protein 4106340 4253999 Shewmr4_3433 Shewanella sp. MR-4 hypothetical protein YP_735556.1 4105312 R 60480 CDS YP_735557.1 113971764 4254000 complement(4106357..4107415) 1 NC_008321.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO4051 HlyD family secretion protein; secretion protein HlyD family protein 4107415 4254000 Shewmr4_3434 Shewanella sp. MR-4 secretion protein HlyD family protein YP_735557.1 4106357 R 60480 CDS YP_735558.1 113971765 4254001 complement(4107424..4107900) 1 NC_008321.1 PFAM: regulatory protein, MarR; KEGG: son:SO4052 transcriptional regulator, MarR family; MarR family transcriptional regulator 4107900 4254001 Shewmr4_3435 Shewanella sp. MR-4 MarR family transcriptional regulator YP_735558.1 4107424 R 60480 CDS YP_735559.1 113971766 4254002 4108088..4108204 1 NC_008321.1 hypothetical protein 4108204 4254002 Shewmr4_3436 Shewanella sp. MR-4 hypothetical protein YP_735559.1 4108088 D 60480 CDS YP_735560.1 113971767 4254003 complement(4108271..4109164) 1 NC_008321.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 4109164 metF 4254003 metF Shewanella sp. MR-4 5,10-methylenetetrahydrofolate reductase YP_735560.1 4108271 R 60480 CDS YP_735561.1 113971768 4254004 complement(4109468..4111861) 1 NC_008321.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4111861 metL 4254004 metL Shewanella sp. MR-4 bifunctional aspartate kinase II/homoserine dehydrogenase II YP_735561.1 4109468 R 60480 CDS YP_735562.1 113971769 4254005 complement(4111873..4113054) 1 NC_008321.1 KEGG: son:SO4056 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; cystathionine gamma-synthase 4113054 4254005 Shewmr4_3439 Shewanella sp. MR-4 cystathionine gamma-synthase YP_735562.1 4111873 R 60480 CDS YP_735563.1 113971770 4254006 4113259..4113573 1 NC_008321.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4113573 4254006 Shewmr4_3440 Shewanella sp. MR-4 transcriptional repressor protein MetJ YP_735563.1 4113259 D 60480 CDS YP_735564.1 113971771 4254007 4113675..4114418 1 NC_008321.1 PFAM: protein of unknown function DUF81; KEGG: son:SO4058 hypothetical protein; hypothetical protein 4114418 4254007 Shewmr4_3441 Shewanella sp. MR-4 hypothetical protein YP_735564.1 4113675 D 60480 CDS YP_735565.1 113971772 4254008 complement(4114532..4115476) 1 NC_008321.1 PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4060 polysulfide reductase, subunit C; polysulfide reductase, NrfD 4115476 4254008 Shewmr4_3442 Shewanella sp. MR-4 polysulfide reductase, NrfD YP_735565.1 4114532 R 60480 CDS YP_735566.1 113971773 4254009 complement(4115479..4116045) 1 NC_008321.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4061 polysulfide reductase, subunit B; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 4116045 4254009 Shewmr4_3443 Shewanella sp. MR-4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_735566.1 4115479 R 60480 CDS YP_735567.1 113971774 4254010 complement(4116058..4118352) 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4062 polysulfide reductase, subunit A; twin-arginine translocation pathway signal 4118352 4254010 Shewmr4_3444 Shewanella sp. MR-4 twin-arginine translocation pathway signal YP_735567.1 4116058 R 60480 CDS YP_735568.1 113971775 4254011 complement(4118829..4119455) 1 NC_008321.1 PFAM: pentapeptide repeat protein; KEGG: son:SO4064 mcbg protein, putative; pentapeptide repeat-containing protein 4119455 4254011 Shewmr4_3445 Shewanella sp. MR-4 pentapeptide repeat-containing protein YP_735568.1 4118829 R 60480 CDS YP_735569.1 113971776 4254012 4119859..4120170 1 NC_008321.1 hypothetical protein 4120170 4254012 Shewmr4_3446 Shewanella sp. MR-4 hypothetical protein YP_735569.1 4119859 D 60480 CDS YP_735570.1 113971777 4254013 4120157..4121260 1 NC_008321.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 4121260 4254013 Shewmr4_3447 Shewanella sp. MR-4 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_735570.1 4120157 D 60480 CDS YP_735571.1 113971778 4254014 4121842..4122747 1 NC_008321.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bth:BT3559 hypothetical protein; endonuclease/exonuclease/phosphatase 4122747 4254014 Shewmr4_3448 Shewanella sp. MR-4 endonuclease/exonuclease/phosphatase YP_735571.1 4121842 D 60480 CDS YP_735572.1 113971779 4254015 complement(4123778..4124563) 1 NC_008321.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4069 hypothetical protein; type 11 methyltransferase 4124563 4254015 Shewmr4_3449 Shewanella sp. MR-4 type 11 methyltransferase YP_735572.1 4123778 R 60480 CDS YP_735573.1 113971780 4254016 complement(4124834..4125544) 1 NC_008321.1 PFAM: protein of unknown function DUF541; KEGG: son:SO4070 hypothetical protein; hypothetical protein 4125544 4254016 Shewmr4_3450 Shewanella sp. MR-4 hypothetical protein YP_735573.1 4124834 R 60480 CDS YP_735574.1 113971781 4254017 4125965..4127395 1 NC_008321.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase 4127395 rimO 4254017 rimO Shewanella sp. MR-4 ribosomal protein S12 methylthiotransferase YP_735574.1 4125965 D 60480 CDS YP_735575.1 113971782 4254018 complement(4127711..4127938) 1 NC_008321.1 PFAM: protein of unknown function DUF331; KEGG: son:SO4073 hypothetical protein; hypothetical protein 4127938 4254018 Shewmr4_3452 Shewanella sp. MR-4 hypothetical protein YP_735575.1 4127711 R 60480 CDS YP_735576.1 113971783 4254019 4128194..4129039 1 NC_008321.1 KEGG: son:SO4075 hypothetical protein; hypothetical protein 4129039 4254019 Shewmr4_3453 Shewanella sp. MR-4 hypothetical protein YP_735576.1 4128194 D 60480 CDS YP_735577.1 113971784 4254020 4129221..4131362 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4077 TonB-dependent receptor, putative; TonB-dependent receptor 4131362 4254020 Shewmr4_3454 Shewanella sp. MR-4 TonB-dependent receptor YP_735577.1 4129221 D 60480 CDS YP_735578.1 113971785 4254021 complement(4131479..4132822) 1 NC_008321.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: son:SO4078 PmbA protein; microcin-processing peptidase 1 4132822 4254021 Shewmr4_3455 Shewanella sp. MR-4 microcin-processing peptidase 1 YP_735578.1 4131479 R 60480 CDS YP_735579.1 113971786 4254022 4132998..4133531 1 NC_008321.1 PFAM: protein of unknown function DUF615; KEGG: son:SO4079 hypothetical protein; hypothetical protein 4133531 4254022 Shewmr4_3456 Shewanella sp. MR-4 hypothetical protein YP_735579.1 4132998 D 60480 CDS YP_735580.1 113971787 4254023 4133561..4136050 1 NC_008321.1 PFAM: Ig domain protein, group 1 domain protein; KEGG: son:SO4080 hypothetical protein; Ig domain-containing protein 4136050 4254023 Shewmr4_3457 Shewanella sp. MR-4 Ig domain-containing protein YP_735580.1 4133561 D 60480 CDS YP_735581.1 113971788 4254024 complement(4136103..4137434) 1 NC_008321.1 PFAM: amino acid permease-associated region; KEGG: son:SO4081 amino acid permease; amino acid permease-associated protein 4137434 4254024 Shewmr4_3458 Shewanella sp. MR-4 amino acid permease-associated protein YP_735581.1 4136103 R 60480 CDS YP_735582.1 113971789 4254025 4137958..4138497 1 NC_008321.1 KEGG: ppr:PBPRB1460 hypothetical protein; hypothetical protein 4138497 4254025 Shewmr4_3459 Shewanella sp. MR-4 hypothetical protein YP_735582.1 4137958 D 60480 CDS YP_735583.1 113971790 4254026 complement(4138630..4139031) 1 NC_008321.1 hypothetical protein 4139031 4254026 Shewmr4_3460 Shewanella sp. MR-4 hypothetical protein YP_735583.1 4138630 R 60480 CDS YP_735584.1 113971791 4254027 complement(4139200..4140351) 1 NC_008321.1 PFAM: ABC-2 type transporter; KEGG: son:SO4087 conserved hypothetical protein; ABC-2 type transporter 4140351 4254027 Shewmr4_3461 Shewanella sp. MR-4 ABC-2 type transporter YP_735584.1 4139200 R 60480 CDS YP_735585.1 113971792 4254028 complement(4140353..4141642) 1 NC_008321.1 PFAM: ABC-2 type transporter; KEGG: son:SO4088 conserved hypothetical protein; ABC-2 type transporter 4141642 4254028 Shewmr4_3462 Shewanella sp. MR-4 ABC-2 type transporter YP_735585.1 4140353 R 60480 CDS YP_735586.1 113971793 4254029 complement(4141648..4142622) 1 NC_008321.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO4089 HlyD family secretion protein; secretion protein HlyD family protein 4142622 4254029 Shewmr4_3463 Shewanella sp. MR-4 secretion protein HlyD family protein YP_735586.1 4141648 R 60480 CDS YP_735587.1 113971794 4254030 complement(4142612..4144081) 1 NC_008321.1 PFAM: outer membrane efflux protein; KEGG: son:SO4090 outer membrane efflux protein; outer membrane efflux protein 4144081 4254030 Shewmr4_3464 Shewanella sp. MR-4 outer membrane efflux protein YP_735587.1 4142612 R 60480 CDS YP_735588.1 113971795 4254031 complement(4144144..4145637) 1 NC_008321.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: son:SO4091 TldD protein; microcin-processing peptidase 2 4145637 4254031 Shewmr4_3465 Shewanella sp. MR-4 microcin-processing peptidase 2 YP_735588.1 4144144 R 60480 CDS YP_735589.1 113971796 4254032 complement(4145717..4146565) 1 NC_008321.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: son:SO4092 hydrolase, carbon-nitrogen family; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4146565 4254032 Shewmr4_3466 Shewanella sp. MR-4 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_735589.1 4145717 R 60480 CDS YP_735590.1 113971797 4254033 complement(4146489..4150739) 1 NC_008321.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO4093 hypothetical protein; hypothetical protein 4150739 4254033 Shewmr4_3467 Shewanella sp. MR-4 hypothetical protein YP_735590.1 4146489 R 60480 CDS YP_735591.1 113971798 4254034 complement(4150739..4152247) 1 NC_008321.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 4152247 4254034 Shewmr4_3468 Shewanella sp. MR-4 ribonuclease G YP_735591.1 4150739 R 60480 CDS YP_735592.1 113971799 4254035 complement(4152359..4152943) 1 NC_008321.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO4095 maf protein; maf protein 4152943 4254035 Shewmr4_3469 Shewanella sp. MR-4 maf protein YP_735592.1 4152359 R 60480 CDS YP_735593.1 113971800 4254036 complement(4152946..4153434) 1 NC_008321.1 PFAM: Rod shape-determining protein MreD; KEGG: son:SO4096 rod shape-determining protein MreD; rod shape-determining protein MreD 4153434 4254036 Shewmr4_3470 Shewanella sp. MR-4 rod shape-determining protein MreD YP_735593.1 4152946 R 60480 CDS YP_735594.1 113971801 4254037 complement(4153434..4154495) 1 NC_008321.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 4154495 4254037 Shewmr4_3471 Shewanella sp. MR-4 rod shape-determining protein MreC YP_735594.1 4153434 R 60480 CDS YP_735595.1 113971802 4254038 complement(4154540..4155589) 1 NC_008321.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 4155589 4254038 Shewmr4_3472 Shewanella sp. MR-4 rod shape-determining protein MreB YP_735595.1 4154540 R 60480 CDS YP_735596.1 113971803 4254039 complement(4155932..4159717) 1 NC_008321.1 KEGG: son:SO4100 MSHA biogenesis protein MshQ; MSHA biogenesis protein MshQ 4159717 4254039 Shewmr4_3473 Shewanella sp. MR-4 MSHA biogenesis protein MshQ YP_735596.1 4155932 R 60480 CDS YP_735597.1 113971804 4254040 complement(4159707..4160165) 1 NC_008321.1 KEGG: son:SO4101 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP 4160165 4254040 Shewmr4_3474 Shewanella sp. MR-4 MSHA biogenesis protein MshP YP_735597.1 4159707 R 60480 CDS YP_735598.1 113971805 4254041 complement(4160155..4161018) 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: son:SO4102 MSHA biogenesis protein MshO; methylation site containing protein 4161018 4254041 Shewmr4_3475 Shewanella sp. MR-4 methylation site containing protein YP_735598.1 4160155 R 60480 CDS YP_735599.1 113971806 4254042 complement(4161018..4161593) 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: son:SO4103 MSHA pilin protein MshD; methylation site containing protein 4161593 4254042 Shewmr4_3476 Shewanella sp. MR-4 methylation site containing protein YP_735599.1 4161018 R 60480 CDS YP_735600.1 113971807 4254043 complement(4161583..4162071) 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: son:SO4104 MSHA pilin protein MshC; methylation site containing protein 4162071 4254043 Shewmr4_3477 Shewanella sp. MR-4 methylation site containing protein YP_735600.1 4161583 R 60480 CDS YP_735601.1 113971808 4254044 complement(4162322..4162831) 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: sdn:Sden_3340 methylation; methylation site containing protein 4162831 4254044 Shewmr4_3478 Shewanella sp. MR-4 methylation site containing protein YP_735601.1 4162322 R 60480 CDS YP_735602.1 113971809 4254045 complement(4162845..4163354) 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: son:SO4105 MSHA pilin protein MshA; methylation site containing protein 4163354 4254045 Shewmr4_3479 Shewanella sp. MR-4 methylation site containing protein YP_735602.1 4162845 R 60480 CDS YP_735603.1 113971810 4254046 complement(4163407..4164024) 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: son:SO4106 MSHA pilin protein MshB; methylation site containing protein 4164024 4254046 Shewmr4_3480 Shewanella sp. MR-4 methylation site containing protein YP_735603.1 4163407 R 60480 CDS YP_735604.1 113971811 4254047 complement(4164101..4164595) 1 NC_008321.1 KEGG: son:SO4107 hypothetical protein; hypothetical protein 4164595 4254047 Shewmr4_3481 Shewanella sp. MR-4 hypothetical protein YP_735604.1 4164101 R 60480 CDS YP_735605.1 113971812 4254048 complement(4164634..4165854) 1 NC_008321.1 PFAM: type II secretion system protein; KEGG: son:SO4108 MSHA biogenesis protein MshG; type II secretion system protein 4165854 4254048 Shewmr4_3482 Shewanella sp. MR-4 type II secretion system protein YP_735605.1 4164634 R 60480 CDS YP_735606.1 113971813 4254049 complement(4165857..4167617) 1 NC_008321.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO4109 MSHA biogenesis protein MshE; type II secretion system protein E 4167617 4254049 Shewmr4_3483 Shewanella sp. MR-4 type II secretion system protein E YP_735606.1 4165857 R 60480 CDS YP_735607.1 113971814 4254050 complement(4167614..4168939) 1 NC_008321.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO4110 MSHA biogenesis protein MshN, putative; TPR repeat-containing protein 4168939 4254050 Shewmr4_3484 Shewanella sp. MR-4 TPR repeat-containing protein YP_735607.1 4167614 R 60480 CDS YP_735608.1 113971815 4254051 complement(4168936..4169868) 1 NC_008321.1 KEGG: son:SO4111 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM 4169868 4254051 Shewmr4_3485 Shewanella sp. MR-4 MSHA biogenesis protein MshM YP_735608.1 4168936 R 60480 CDS YP_735609.1 113971816 4254052 complement(4169875..4171560) 1 NC_008321.1 TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB, short N-terminal domain protein; KEGG: son:SO4112 MSHA biogenesis protein MshL; pilus (MSHA type) biogenesis protein MshL 4171560 4254052 Shewmr4_3486 Shewanella sp. MR-4 pilus (MSHA type) biogenesis protein MshL YP_735609.1 4169875 R 60480 CDS YP_735610.1 113971817 4254053 complement(4171575..4171892) 1 NC_008321.1 KEGG: son:SO4113 MSHA biogenesis protein MshK; MSHA biogenesis protein MshK 4171892 4254053 Shewmr4_3487 Shewanella sp. MR-4 MSHA biogenesis protein MshK YP_735610.1 4171575 R 60480 CDS YP_735611.1 113971818 4254054 complement(4171879..4172529) 1 NC_008321.1 KEGG: son:SO4114 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ 4172529 4254054 Shewmr4_3488 Shewanella sp. MR-4 MSHA biogenesis protein MshJ YP_735611.1 4171879 R 60480 CDS YP_735612.1 113971819 4254055 complement(4172526..4173128) 1 NC_008321.1 KEGG: sdn:Sden_3350 hypothetical protein; hypothetical protein 4173128 4254055 Shewmr4_3489 Shewanella sp. MR-4 hypothetical protein YP_735612.1 4172526 R 60480 CDS YP_735613.1 113971820 4254056 complement(4173125..4174003) 1 NC_008321.1 KEGG: son:SO4114.2 hypothetical biogenesis protein MshI; biogenesis protein MshI 4174003 4254056 Shewmr4_3490 Shewanella sp. MR-4 biogenesis protein MshI YP_735613.1 4173125 R 60480 CDS YP_735614.1 113971821 4254057 complement(4174241..4176151) 1 NC_008321.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 4176151 4254057 Shewmr4_3491 Shewanella sp. MR-4 regulatory protein CsrD YP_735614.1 4174241 R 60480 CDS YP_735615.1 113971822 4254058 complement(4176366..4177610) 1 NC_008321.1 PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: son:SO4118 malate oxidoreductase, putative; malate dehydrogenase 4177610 4254058 Shewmr4_3492 Shewanella sp. MR-4 malate dehydrogenase YP_735615.1 4176366 R 60480 CDS YP_735616.1 113971823 4254059 complement(4178122..4178334) 1 NC_008321.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 4178334 rpmE 4254059 rpmE Shewanella sp. MR-4 50S ribosomal protein L31 YP_735616.1 4178122 R 60480 CDS YP_735617.1 113971824 4254060 complement(4178500..4179660) 1 NC_008321.1 KEGG: son:SO4121 hypothetical protein; hypothetical protein 4179660 4254060 Shewmr4_3494 Shewanella sp. MR-4 hypothetical protein YP_735617.1 4178500 R 60480 CDS YP_735618.1 113971825 4254061 4179764..4181974 1 NC_008321.1 TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO4122 primosomal protein N'; primosomal protein N' 4181974 4254061 Shewmr4_3495 Shewanella sp. MR-4 primosomal protein N' YP_735618.1 4179764 D 60480 CDS YP_735619.1 113971826 4254062 4182086..4183831 1 NC_008321.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 4183831 argS 4254062 argS Shewanella sp. MR-4 arginyl-tRNA synthetase YP_735619.1 4182086 D 60480 CDS YP_735620.1 113971827 4254063 4183835..4184530 1 NC_008321.1 PFAM: Sporulation domain protein; KEGG: son:SO4124 cell division protein FtsN, putative; sporulation domain-containing protein 4184530 4254063 Shewmr4_3497 Shewanella sp. MR-4 sporulation domain-containing protein YP_735620.1 4183835 D 60480 CDS YP_735621.1 113971828 4254064 4184833..4185057 1 NC_008321.1 KEGG: son:SO4126 hypothetical protein; hypothetical protein 4185057 4254064 Shewmr4_3498 Shewanella sp. MR-4 hypothetical protein YP_735621.1 4184833 D 60480 CDS YP_735622.1 113971829 4254065 complement(4185502..4186347) 1 NC_008321.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: vvy:VV2149 AraC-type DNA-binding domain-containing protein; AraC family transcriptional regulator 4186347 4254065 Shewmr4_3499 Shewanella sp. MR-4 AraC family transcriptional regulator YP_735622.1 4185502 R 60480 CDS YP_735623.1 113971830 4254066 4186469..4187002 1 NC_008321.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: vvu:VV12207 hypothetical protein; alkylhydroperoxidase 4187002 4254066 Shewmr4_3500 Shewanella sp. MR-4 alkylhydroperoxidase YP_735623.1 4186469 D 60480 CDS YP_735624.1 113971831 4254067 complement(4187293..4188225) 1 NC_008321.1 PFAM: band 7 protein; KEGG: son:SO4128 SPFH domain/Band 7 family protein; SPFH domain-containing protein/band 7 family protein 4188225 4254067 Shewmr4_3501 Shewanella sp. MR-4 SPFH domain-containing protein/band 7 family protein YP_735624.1 4187293 R 60480 CDS YP_735625.1 113971832 4254068 complement(4188225..4189160) 1 NC_008321.1 PFAM: band 7 protein; KEGG: son:SO4129 SPFH domain/Band 7 family protein; SPFH domain-containing protein/band 7 family protein 4189160 4254068 Shewmr4_3502 Shewanella sp. MR-4 SPFH domain-containing protein/band 7 family protein YP_735625.1 4188225 R 60480 CDS YP_735626.1 113971833 4254069 complement(4189172..4189642) 1 NC_008321.1 PFAM: protein of unknown function DUF107; KEGG: son:SO4130 hypothetical protein; hypothetical protein 4189642 4254069 Shewmr4_3503 Shewanella sp. MR-4 hypothetical protein YP_735626.1 4189172 R 60480 CDS YP_735627.1 113971834 4254070 4190130..4190882 1 NC_008321.1 KEGG: son:SO4131 hypothetical protein; hypothetical protein 4190882 4254070 Shewmr4_3504 Shewanella sp. MR-4 hypothetical protein YP_735627.1 4190130 D 60480 CDS YP_735628.1 113971835 4254071 complement(4190995..4191753) 1 NC_008321.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4191753 4254071 Shewmr4_3505 Shewanella sp. MR-4 uridine phosphorylase YP_735628.1 4190995 R 60480 CDS YP_735629.1 113971836 4254072 4192166..4192378 1 NC_008321.1 PFAM: protein of unknown function DUF465; KEGG: son:SO4134 hypothetical protein; hypothetical protein 4192378 4254072 Shewmr4_3506 Shewanella sp. MR-4 hypothetical protein YP_735629.1 4192166 D 60480 CDS YP_735630.1 113971837 4254073 complement(4192438..4193613) 1 NC_008321.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: son:SO4136 decarboxylase, pyridoxal-dependent; ornithine decarboxylase 4193613 4254073 Shewmr4_3507 Shewanella sp. MR-4 ornithine decarboxylase YP_735630.1 4192438 R 60480 CDS YP_735631.1 113971838 4254074 complement(4194030..4194509) 1 NC_008321.1 KEGG: son:SO4138 hypothetical protein; hypothetical protein 4194509 4254074 Shewmr4_3508 Shewanella sp. MR-4 hypothetical protein YP_735631.1 4194030 R 60480 CDS YP_735632.1 113971839 4254075 4194678..4195514 1 NC_008321.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pca:Pcar_0306 hypothetical protein; mechanosensitive ion channel protein MscS 4195514 4254075 Shewmr4_3509 Shewanella sp. MR-4 mechanosensitive ion channel protein MscS YP_735632.1 4194678 D 60480 CDS YP_735633.1 113971840 4254076 4195632..4197170 1 NC_008321.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4139 hypothetical protein; Sel1 domain-containing protein 4197170 4254076 Shewmr4_3510 Shewanella sp. MR-4 Sel1 domain-containing protein YP_735633.1 4195632 D 60480 CDS YP_735634.1 113971841 4254077 4197763..4198092 1 NC_008321.1 KEGG: son:SO4142 cytochrome c family protein; cytochrome c family protein 4198092 4254077 Shewmr4_3511 Shewanella sp. MR-4 cytochrome c family protein YP_735634.1 4197763 D 60480 CDS YP_735635.1 113971842 4254078 4198270..4200000 1 NC_008321.1 KEGG: son:SO4143 hypothetical protein; hypothetical protein 4200000 4254078 Shewmr4_3512 Shewanella sp. MR-4 hypothetical protein YP_735635.1 4198270 D 60480 CDS YP_735636.1 113971843 4254079 4200047..4201435 1 NC_008321.1 KEGG: son:SO4144 cytochrome c, putative; cytochrome c 4201435 4254079 Shewmr4_3513 Shewanella sp. MR-4 cytochrome c YP_735636.1 4200047 D 60480 CDS YP_735637.1 113971844 4254080 4201715..4202875 1 NC_008321.1 PFAM: Benzoate membrane transport protein; sulphate transporter; KEGG: son:SO4150 transporter, putative; sulfate transporter 4202875 4254080 Shewmr4_3514 Shewanella sp. MR-4 sulfate transporter YP_735637.1 4201715 D 60480 CDS YP_735638.1 113971845 4254081 4203217..4203675 1 NC_008321.1 TIGRFAM: TonB family protein; KEGG: pat:Patl_2439 hypothetical protein; TonB family protein 4203675 4254081 Shewmr4_3515 Shewanella sp. MR-4 TonB family protein YP_735638.1 4203217 D 60480 CDS YP_735639.1 113971846 4254082 complement(4204015..4205838) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4155 sensor histidine kinase; histidine kinase 4205838 4254082 Shewmr4_3516 Shewanella sp. MR-4 histidine kinase YP_735639.1 4204015 R 60480 CDS YP_735640.1 113971847 4254083 4206027..4206632 1 NC_008321.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO4157 DNA-binding response regulator; two component LuxR family transcriptional regulator 4206632 4254083 Shewmr4_3517 Shewanella sp. MR-4 two component LuxR family transcriptional regulator YP_735640.1 4206027 D 60480 CDS YP_735641.1 113971848 4254084 4207072..4207353 1 NC_008321.1 hypothetical protein 4207353 4254084 Shewmr4_3518 Shewanella sp. MR-4 hypothetical protein YP_735641.1 4207072 D 60480 CDS YP_735642.1 113971849 4254085 4208070..4208675 1 NC_008321.1 PFAM: methylation site containing protein; KEGG: son:SO4159 hypothetical protein; methylation site containing protein 4208675 4254085 Shewmr4_3520 Shewanella sp. MR-4 methylation site containing protein YP_735642.1 4208070 D 60480 CDS YP_735643.1 113971850 4254086 4208830..4209354 1 NC_008321.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4209354 4254086 Shewmr4_3521 Shewanella sp. MR-4 ATP-dependent protease peptidase subunit YP_735643.1 4208830 D 60480 CDS YP_735644.1 113971851 4254087 4209373..4210701 1 NC_008321.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4210701 hslU 4254087 hslU Shewanella sp. MR-4 ATP-dependent protease ATP-binding subunit HslU YP_735644.1 4209373 D 60480 CDS YP_735645.1 113971852 4254088 4210847..4211233 1 NC_008321.1 PFAM: protein of unknown function DUF971; KEGG: son:SO4164 hypothetical protein; hypothetical protein 4211233 4254088 Shewmr4_3523 Shewanella sp. MR-4 hypothetical protein YP_735645.1 4210847 D 60480 CDS YP_735646.1 113971853 4254089 4211303..4211890 1 NC_008321.1 KEGG: pae:PA0571 hypothetical protein; hypothetical protein 4211890 4254089 Shewmr4_3524 Shewanella sp. MR-4 hypothetical protein YP_735646.1 4211303 D 60480 CDS YP_735647.1 113971854 4254090 4212274..4213743 1 NC_008321.1 PFAM: KAP P-loop domain protein; KEGG: sdn:Sden_3419 kap P-loop; KAP P-loop domain-containing protein 4213743 4254090 Shewmr4_3525 Shewanella sp. MR-4 KAP P-loop domain-containing protein YP_735647.1 4212274 D 60480 CDS YP_735648.1 113971855 4254091 4214249..4215826 1 NC_008321.1 PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: son:SO4169 hypothetical protein; deoxyribodipyrimidine photolyase-like protein 4215826 4254091 Shewmr4_3526 Shewanella sp. MR-4 deoxyribodipyrimidine photolyase-like protein YP_735648.1 4214249 D 60480 CDS YP_735649.1 113971856 4254092 4215852..4216562 1 NC_008321.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO4170 C factor cell-cell signaling protein; C factor cell-cell signaling protein 4216562 4254092 Shewmr4_3527 Shewanella sp. MR-4 C factor cell-cell signaling protein YP_735649.1 4215852 D 60480 CDS YP_735650.1 113971857 4254093 complement(4216623..4217099) 1 NC_008321.1 KEGG: son:SO4171 hypothetical protein; hypothetical protein 4217099 4254093 Shewmr4_3528 Shewanella sp. MR-4 hypothetical protein YP_735650.1 4216623 R 60480 CDS YP_735651.1 113971858 4254094 complement(4217131..4217682) 1 NC_008321.1 PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: son:SO4172 DNA-binding response regulator; response regulator receiver protein 4217682 4254094 Shewmr4_3529 Shewanella sp. MR-4 response regulator receiver protein YP_735651.1 4217131 R 60480 CDS YP_735652.1 113971859 4254095 complement(4217679..4218968) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4173 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 4218968 4254095 Shewmr4_3530 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_735652.1 4217679 R 60480 CDS YP_735653.1 113971860 4254096 complement(4218972..4219892) 1 NC_008321.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO4174 NAD dependent epimerase/dehydratase family protein; dTDP-4-dehydrorhamnose reductase 4219892 4254096 Shewmr4_3531 Shewanella sp. MR-4 dTDP-4-dehydrorhamnose reductase YP_735653.1 4218972 R 60480 CDS YP_735654.1 113971861 4254097 4220073..4221920 1 NC_008321.1 KEGG: son:SO4176 hypothetical protein; hypothetical protein 4221920 4254097 Shewmr4_3532 Shewanella sp. MR-4 hypothetical protein YP_735654.1 4220073 D 60480 CDS YP_735655.1 113971862 4254098 complement(4221922..4222284) 1 NC_008321.1 KEGG: son:SO4177 hypothetical protein; hypothetical protein 4222284 4254098 Shewmr4_3533 Shewanella sp. MR-4 hypothetical protein YP_735655.1 4221922 R 60480 CDS YP_735656.1 113971863 4254099 complement(4222490..4223545) 1 NC_008321.1 KEGG: son:SO4178 hypothetical protein; hypothetical protein 4223545 4254099 Shewmr4_3534 Shewanella sp. MR-4 hypothetical protein YP_735656.1 4222490 R 60480 CDS YP_735657.1 113971864 4254100 complement(4223545..4224873) 1 NC_008321.1 PFAM: glycosyl transferase, family 2; chitin synthase; KEGG: son:SO4179 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 4224873 4254100 Shewmr4_3535 Shewanella sp. MR-4 glycosyl transferase family protein YP_735657.1 4223545 R 60480 CDS YP_735658.1 113971865 4254101 complement(4224870..4226258) 1 NC_008321.1 KEGG: son:SO4180 hypothetical protein; hypothetical protein 4226258 4254101 Shewmr4_3536 Shewanella sp. MR-4 hypothetical protein YP_735658.1 4224870 R 60480 CDS YP_735659.1 113971866 4254102 complement(4226557..4227483) 1 NC_008321.1 PFAM: pseudouridine synthase; KEGG: sdn:Sden_0482 pseudouridine synthase; pseudouridine synthase 4227483 4254102 Shewmr4_3537 Shewanella sp. MR-4 pseudouridine synthase YP_735659.1 4226557 R 60480 CDS YP_735660.1 113971867 4254103 complement(4227536..4228111) 1 NC_008321.1 KEGG: son:SO4182 ATP-dependent protease La (LON) domain protein, putative; ATP-dependent protease La 4228111 4254103 Shewmr4_3538 Shewanella sp. MR-4 ATP-dependent protease La YP_735660.1 4227536 R 60480 CDS YP_735661.1 113971868 4254104 complement(4228256..4229311) 1 NC_008321.1 KEGG: sdn:Sden_0480 hypothetical protein; hypothetical protein 4229311 4254104 Shewmr4_3539 Shewanella sp. MR-4 hypothetical protein YP_735661.1 4228256 R 60480 CDS YP_735662.1 113971869 4254105 4229574..4232012 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ilo:IL2271 outer membrane protein; TonB-dependent receptor 4232012 4254105 Shewmr4_3540 Shewanella sp. MR-4 TonB-dependent receptor YP_735662.1 4229574 D 60480 CDS YP_735663.1 113971870 4254106 4232140..4232601 1 NC_008321.1 PFAM: conserved hypothetical protein 22; KEGG: son:SO4189 hypothetical protein; hypothetical protein 4232601 4254106 Shewmr4_3541 Shewanella sp. MR-4 hypothetical protein YP_735663.1 4232140 D 60480 CDS YP_735664.1 113971871 4254107 4232745..4233665 1 NC_008321.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 4233665 4254107 Shewmr4_3542 Shewanella sp. MR-4 putative manganese-dependent inorganic pyrophosphatase YP_735664.1 4232745 D 60480 CDS YP_735665.1 113971872 4254108 4233834..4234445 1 NC_008321.1 KEGG: son:SO4191 DedA family protein; DedA family protein 4234445 4254108 Shewmr4_3543 Shewanella sp. MR-4 DedA family protein YP_735665.1 4233834 D 60480 CDS YP_735666.1 113971873 4254109 4234537..4234974 1 NC_008321.1 TIGRFAM: TonB family protein; KEGG: cps:CPS_2467 hypothetical protein; TonB family protein 4234974 4254109 Shewmr4_3544 Shewanella sp. MR-4 TonB family protein YP_735666.1 4234537 D 60480 CDS YP_735667.1 113971874 4254110 complement(4235039..4236625) 1 NC_008321.1 KEGG: son:SO4193 hypothetical protein; hypothetical protein 4236625 4254110 Shewmr4_3545 Shewanella sp. MR-4 hypothetical protein YP_735667.1 4235039 R 60480 CDS YP_735668.1 113971875 4254111 complement(4236766..4237806) 1 NC_008321.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO4194 hypothetical protein; hypothetical protein 4237806 4254111 Shewmr4_3546 Shewanella sp. MR-4 hypothetical protein YP_735668.1 4236766 R 60480 CDS YP_735669.1 113971876 4254112 complement(4237880..4238392) 1 NC_008321.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO4195 PAP2 family protein; phosphoesterase, PA-phosphatase related 4238392 4254112 Shewmr4_3547 Shewanella sp. MR-4 phosphoesterase, PA-phosphatase related YP_735669.1 4237880 R 60480 CDS YP_735670.1 113971877 4254113 complement(4238748..4239002) 1 NC_008321.1 KEGG: son:SO4196 hypothetical protein; hypothetical protein 4239002 4254113 Shewmr4_3548 Shewanella sp. MR-4 hypothetical protein YP_735670.1 4238748 R 60480 CDS YP_735671.1 113971878 4254114 4239321..4239806 1 NC_008321.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4239806 4254114 Shewmr4_3549 Shewanella sp. MR-4 ribonuclease activity regulator protein RraA YP_735671.1 4239321 D 60480 CDS YP_735672.1 113971879 4254115 4239938..4240990 1 NC_008321.1 PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: son:SO4198 arginase family protein; arginase/agmatinase/formiminoglutamase 4240990 4254115 Shewmr4_3550 Shewanella sp. MR-4 arginase/agmatinase/formiminoglutamase YP_735672.1 4239938 D 60480 CDS YP_735673.1 113971880 4254116 4241232..4241987 1 NC_008321.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4199 ubiquinone/menaquinone biosynthesis methlytransferase UbiE; demethylmenaquinone methyltransferase 4241987 4254116 Shewmr4_3551 Shewanella sp. MR-4 demethylmenaquinone methyltransferase YP_735673.1 4241232 D 60480 CDS YP_735674.1 113971881 4254117 4241987..4242607 1 NC_008321.1 PFAM: protein of unknown function DUF1243; KEGG: son:SO4200 conserved hypothetical protein; hypothetical protein 4242607 4254117 Shewmr4_3552 Shewanella sp. MR-4 hypothetical protein YP_735674.1 4241987 D 60480 CDS YP_735675.1 113971882 4254118 4242604..4244253 1 NC_008321.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: son:SO4201 ubiquinone biosynthesis protein AarF; 2-octaprenylphenol hydroxylase 4244253 4254118 Shewmr4_3553 Shewanella sp. MR-4 2-octaprenylphenol hydroxylase YP_735675.1 4242604 D 60480 CDS YP_735676.1 113971883 4254119 4244313..4244570 1 NC_008321.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: son:SO4202 Sec-independent protein translocase protein TatA; twin arginine-targeting protein translocase 4244570 4254119 Shewmr4_3554 Shewanella sp. MR-4 twin arginine-targeting protein translocase YP_735676.1 4244313 D 60480 CDS YP_735677.1 113971884 4254120 4244577..4245020 1 NC_008321.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: son:SO4203 Sec-independent protein translocase protein TatB; twin-arginine translocation protein, TatB subunit 4245020 4254120 Shewmr4_3555 Shewanella sp. MR-4 twin-arginine translocation protein, TatB subunit YP_735677.1 4244577 D 60480 CDS YP_735678.1 113971885 4254121 4245023..4245772 1 NC_008321.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: son:SO4204 Sec-independent periplasmic protein translocation protein TatC; Sec-independent protein translocase TatC 4245772 4254121 Shewmr4_3556 Shewanella sp. MR-4 Sec-independent protein translocase TatC YP_735678.1 4245023 D 60480 CDS YP_735679.1 113971886 4254122 4245817..4246347 1 NC_008321.1 KEGG: son:SO4205 hypothetical protein; hypothetical protein 4246347 4254122 Shewmr4_3557 Shewanella sp. MR-4 hypothetical protein YP_735679.1 4245817 D 60480 CDS YP_735680.1 113971887 4254123 4246347..4247150 1 NC_008321.1 PFAM: TatD-related deoxyribonuclease; KEGG: son:SO4206 hydrolase, TatD family; Sec-independent protein translocase TatD 4247150 4254123 Shewmr4_3558 Shewanella sp. MR-4 Sec-independent protein translocase TatD YP_735680.1 4246347 D 60480 CDS YP_735681.1 113971888 4254124 4247143..4249020 1 NC_008321.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: son:SO4207 GGDEF domain protein; diguanylate cyclase 4249020 4254124 Shewmr4_3559 Shewanella sp. MR-4 diguanylate cyclase YP_735681.1 4247143 D 60480 CDS YP_735682.1 113971889 4254125 4249030..4250040 1 NC_008321.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 4250040 4254125 Shewmr4_3560 Shewanella sp. MR-4 delta-aminolevulinic acid dehydratase YP_735682.1 4249030 D 60480 CDS YP_735683.1 113971890 4254126 complement(4255401..4255499) 1 NC_008321.1 KEGG: son:SO0043 hypothetical protein; hypothetical protein 4255499 4254126 Shewmr4_3561 Shewanella sp. MR-4 hypothetical protein YP_735683.1 4255401 R 60480 CDS YP_735684.1 113971891 4254127 complement(4262299..4265025) 1 NC_008321.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 4265025 4254127 Shewmr4_3562 Shewanella sp. MR-4 preprotein translocase subunit SecA YP_735684.1 4262299 R 60480 CDS YP_735685.1 113971892 4254128 complement(4265086..4265985) 1 NC_008321.1 PFAM: peptidase M23B; KEGG: son:SO4212 peptidase, M23/M37 family; peptidase M23B 4265985 4254128 Shewmr4_3563 Shewanella sp. MR-4 peptidase M23B YP_735685.1 4265086 R 60480 CDS YP_735686.1 113971893 4254129 complement(4266474..4267394) 1 NC_008321.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 4267394 lpxC 4254129 lpxC Shewanella sp. MR-4 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_735686.1 4266474 R 60480 CDS YP_735687.1 113971894 4254130 complement(4267575..4268762) 1 NC_008321.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 4268762 4254130 Shewmr4_3566 Shewanella sp. MR-4 cell division protein FtsZ YP_735687.1 4267575 R 60480 CDS YP_735688.1 113971895 4254131 complement(4268790..4270025) 1 NC_008321.1 TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: son:SO4216 cell division protein FtsA; cell division protein FtsA 4270025 4254131 Shewmr4_3567 Shewanella sp. MR-4 cell division protein FtsA YP_735688.1 4268790 R 60480 CDS YP_735689.1 113971896 4254132 complement(4270006..4270755) 1 NC_008321.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: son:SO4217 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein 4270755 4254132 Shewmr4_3568 Shewanella sp. MR-4 polypeptide-transport-associated domain-containing protein YP_735689.1 4270006 R 60480 CDS YP_735690.1 113971897 4254133 complement(4270907..4272373) 1 NC_008321.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 4272373 murC 4254133 murC Shewanella sp. MR-4 UDP-N-acetylmuramate--L-alanine ligase YP_735690.1 4270907 R 60480 CDS YP_735691.1 113971898 4254134 complement(4272376..4273464) 1 NC_008321.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 4273464 murG 4254134 murG Shewanella sp. MR-4 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_735691.1 4272376 R 60480 CDS YP_735692.1 113971899 4254135 complement(4273464..4274675) 1 NC_008321.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: son:SO4220 cell division protein FtsW; cell division protein FtsW 4274675 4254135 Shewmr4_3571 Shewanella sp. MR-4 cell division protein FtsW YP_735692.1 4273464 R 60480 CDS YP_735693.1 113971900 4254136 complement(4274665..4275984) 1 NC_008321.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 4275984 murD 4254136 murD Shewanella sp. MR-4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_735693.1 4274665 R 60480 CDS YP_735694.1 113971901 4254137 complement(4275991..4277073) 1 NC_008321.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 4277073 mraY 4254137 mraY Shewanella sp. MR-4 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_735694.1 4275991 R 60480 CDS YP_735695.1 113971902 4254138 complement(4277074..4278456) 1 NC_008321.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO4223 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 4278456 4254138 Shewmr4_3574 Shewanella sp. MR-4 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_735695.1 4277074 R 60480 CDS YP_735696.1 113971903 4254139 complement(4278453..4279934) 1 NC_008321.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 4279934 murE 4254139 murE Shewanella sp. MR-4 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_735696.1 4278453 R 60480 CDS YP_735697.1 113971904 4254140 complement(4279931..4281682) 1 NC_008321.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: son:SO4225 peptidoglycan synthetase FtsI; peptidoglycan synthetase FtsI 4281682 4254140 Shewmr4_3576 Shewanella sp. MR-4 peptidoglycan synthetase FtsI YP_735697.1 4279931 R 60480 CDS YP_735698.1 113971905 4254141 complement(4281696..4282010) 1 NC_008321.1 TIGRFAM: cell division protein FtsL; PFAM: cell division protein FtsL; KEGG: son:SO4226 cell division protein FtsL; cell division protein FtsL 4282010 4254141 Shewmr4_3577 Shewanella sp. MR-4 cell division protein FtsL YP_735698.1 4281696 R 60480 CDS YP_735699.1 113971906 4254142 complement(4282023..4282964) 1 NC_008321.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: son:SO4227 putative S-adenosyl methionine adenyltransferase; S-adenosyl-methyltransferase MraW 4282964 mraW 4254142 mraW Shewanella sp. MR-4 S-adenosyl-methyltransferase MraW YP_735699.1 4282023 R 60480 CDS YP_735700.1 113971907 4254143 complement(4282995..4283453) 1 NC_008321.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 4283453 4254143 Shewmr4_3579 Shewanella sp. MR-4 cell division protein MraZ YP_735700.1 4282995 R 60480 CDS YP_735701.1 113971908 4254144 4283971..4284675 1 NC_008321.1 KEGG: sdn:Sden_0345 PepSY-associated TM helix; PepSY-associated TM helix 4284675 4254144 Shewmr4_3580 Shewanella sp. MR-4 PepSY-associated TM helix YP_735701.1 4283971 D 60480 CDS YP_735702.1 113971909 4254145 4284672..4285751 1 NC_008321.1 PFAM: ferredoxin; PepSY-associated TM helix domain protein; KEGG: sdn:Sden_0344 ferredoxin; PepSY-associated TM helix domain-containing protein 4285751 4254145 Shewmr4_3581 Shewanella sp. MR-4 PepSY-associated TM helix domain-containing protein YP_735702.1 4284672 D 60480 CDS YP_735703.1 113971910 4254146 4285847..4286167 1 NC_008321.1 KEGG: son:SO4229 hypothetical protein; hypothetical protein 4286167 4254146 Shewmr4_3582 Shewanella sp. MR-4 hypothetical protein YP_735703.1 4285847 D 60480 CDS YP_735704.1 113971911 4254147 complement(4286238..4287722) 1 NC_008321.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: son:SO4230 glycerol kinase; glycerol kinase 4287722 4254147 Shewmr4_3583 Shewanella sp. MR-4 glycerol kinase YP_735704.1 4286238 R 60480 CDS YP_735705.1 113971912 4254148 complement(4287911..4289257) 1 NC_008321.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sdn:Sden_0340 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 4289257 4254148 Shewmr4_3584 Shewanella sp. MR-4 aromatic hydrocarbon degradation membrane protein YP_735705.1 4287911 R 60480 CDS YP_735706.1 113971913 4254149 complement(4289785..4290390) 1 NC_008321.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 4290390 leuD 4254149 leuD Shewanella sp. MR-4 isopropylmalate isomerase small subunit YP_735706.1 4289785 R 60480 CDS YP_735707.1 113971914 4254150 complement(4290415..4291839) 1 NC_008321.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 4291839 4254150 Shewmr4_3586 Shewanella sp. MR-4 isopropylmalate isomerase large subunit YP_735707.1 4290415 R 60480 CDS YP_735708.1 113971915 4254151 complement(4291839..4292933) 1 NC_008321.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 4292933 4254151 Shewmr4_3587 Shewanella sp. MR-4 3-isopropylmalate dehydrogenase YP_735708.1 4291839 R 60480 CDS YP_735709.1 113971916 4254152 complement(4292985..4294553) 1 NC_008321.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 4294553 4254152 Shewmr4_3588 Shewanella sp. MR-4 2-isopropylmalate synthase YP_735709.1 4292985 R 60480 CDS YP_735710.1 113971917 4254153 4295050..4296831 1 NC_008321.1 SMART: Tetratricopeptide domain protein; KEGG: son:SO4240 hypothetical protein; response regulator receiver protein 4296831 4254153 Shewmr4_3589 Shewanella sp. MR-4 response regulator receiver protein YP_735710.1 4295050 D 60480 CDS YP_735711.1 113971918 4254154 complement(4296813..4298636) 1 NC_008321.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO4241 ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase RecQ 4298636 4254154 Shewmr4_3590 Shewanella sp. MR-4 ATP-dependent DNA helicase RecQ YP_735711.1 4296813 R 60480 CDS YP_735712.1 113971919 4254155 4298914..4299378 1 NC_008321.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO4242 hypothetical protein; hypothetical protein 4299378 4254155 Shewmr4_3591 Shewanella sp. MR-4 hypothetical protein YP_735712.1 4298914 D 60480 CDS YP_735713.1 113971920 4254156 4299595..4300479 1 NC_008321.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4243 rarD protein; transporter DMT superfamily protein 4300479 4254156 Shewmr4_3592 Shewanella sp. MR-4 transporter DMT superfamily protein YP_735713.1 4299595 D 60480 CDS YP_735714.1 113971921 4254157 complement(4300542..4301060) 1 NC_008321.1 KEGG: son:SO4244 hypothetical protein; hypothetical protein 4301060 4254157 Shewmr4_3593 Shewanella sp. MR-4 hypothetical protein YP_735714.1 4300542 R 60480 CDS YP_735715.1 113971922 4254158 complement(4301164..4302501) 1 NC_008321.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 4302501 4254158 Shewmr4_3594 Shewanella sp. MR-4 N-acetylglutamate synthase YP_735715.1 4301164 R 60480 CDS YP_735716.1 113971923 4254159 complement(4302807..4302980) 1 NC_008321.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 4302980 rpmG 4254159 rpmG Shewanella sp. MR-4 50S ribosomal protein L33 YP_735716.1 4302807 R 60480 CDS YP_735717.1 113971924 4254160 complement(4302987..4303223) 1 NC_008321.1 required for 70S ribosome assembly; 50S ribosomal protein L28 4303223 rpmB 4254160 rpmB Shewanella sp. MR-4 50S ribosomal protein L28 YP_735717.1 4302987 R 60480 CDS YP_735718.1 113971925 4254161 complement(4303346..4304023) 1 NC_008321.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 4304023 radC 4254161 radC Shewanella sp. MR-4 DNA repair protein RadC YP_735718.1 4303346 R 60480 CDS YP_735719.1 113971926 4254162 4304145..4305362 1 NC_008321.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: son:SO4249 DNA/pantothenate metabolism flavoprotein; phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase 4305362 4254162 Shewmr4_3598 Shewanella sp. MR-4 phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase YP_735719.1 4304145 D 60480 CDS YP_735720.1 113971927 4254163 4305363..4305821 1 NC_008321.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 4305821 dut 4254163 dut Shewanella sp. MR-4 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_735720.1 4305363 D 60480 CDS YP_735721.1 113971928 4254164 4305851..4306444 1 NC_008321.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 4306444 slmA 4254164 slmA Shewanella sp. MR-4 nucleoid occlusion protein YP_735721.1 4305851 D 60480 CDS YP_735722.1 113971929 4254165 4306580..4308565 1 NC_008321.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: son:SO4252 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase 4308565 4254165 Shewmr4_3601 Shewanella sp. MR-4 peptidase S9 prolyl oligopeptidase YP_735722.1 4306580 D 60480 CDS YP_735723.1 113971930 4254166 4308833..4309483 1 NC_008321.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 4309483 folE 4254166 folE Shewanella sp. MR-4 GTP cyclohydrolase I YP_735723.1 4308833 D 60480 CDS YP_735724.1 113971931 4254167 complement(4309578..4310225) 1 NC_008321.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 4310225 pyrE 4254167 pyrE Shewanella sp. MR-4 orotate phosphoribosyltransferase YP_735724.1 4309578 R 60480 CDS YP_735725.1 113971932 4254168 complement(4310322..4311035) 1 NC_008321.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 4311035 rph 4254168 rph Shewanella sp. MR-4 ribonuclease PH YP_735725.1 4310322 R 60480 CDS YP_735726.1 113971933 4254169 4311249..4312112 1 NC_008321.1 TIGRFAM: conserved hypothetical protein; PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: son:SO4257 conserved hypothetical protein TIGR00255; hypothetical protein 4312112 4254169 Shewmr4_3605 Shewanella sp. MR-4 hypothetical protein YP_735726.1 4311249 D 60480 CDS YP_735727.1 113971934 4254170 complement(4312172..4312888) 1 NC_008321.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 4312888 4254170 Shewmr4_3606 Shewanella sp. MR-4 nucleotidase YP_735727.1 4312172 R 60480 CDS YP_735728.1 113971935 4254171 4313247..4314137 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0369 transcriptional regulator, LysR family; LysR family transcriptional regulator 4314137 4254171 Shewmr4_3607 Shewanella sp. MR-4 LysR family transcriptional regulator YP_735728.1 4313247 D 60480 CDS YP_735729.1 113971936 4254172 4314278..4314943 1 NC_008321.1 KEGG: son:SO0366 hypothetical protein; hypothetical protein 4314943 4254172 Shewmr4_3608 Shewanella sp. MR-4 hypothetical protein YP_735729.1 4314278 D 60480 CDS YP_735730.1 113971937 4254173 complement(4314963..4316387) 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0365 hypothetical permeases of the major facilitator superfamily; twin-arginine translocation pathway signal 4316387 4254173 Shewmr4_3609 Shewanella sp. MR-4 twin-arginine translocation pathway signal YP_735730.1 4314963 R 60480 CDS YP_735731.1 113971938 4254174 complement(4316505..4317569) 1 NC_008321.1 PFAM: aminoglycoside phosphotransferase; KEGG: son:SO0364 hypothetical protein; aminoglycoside phosphotransferase 4317569 4254174 Shewmr4_3610 Shewanella sp. MR-4 aminoglycoside phosphotransferase YP_735731.1 4316505 R 60480 CDS YP_735732.1 113971939 4254175 complement(4317553..4318434) 1 NC_008321.1 KEGG: son:SO0363 hypothetical protein; hypothetical protein 4318434 4254175 Shewmr4_3611 Shewanella sp. MR-4 hypothetical protein YP_735732.1 4317553 R 60480 CDS YP_735733.1 113971940 4254176 complement(4318580..4320076) 1 NC_008321.1 KEGG: son:SO0362 hypothetical protein; hypothetical protein 4320076 4254176 Shewmr4_3612 Shewanella sp. MR-4 hypothetical protein YP_735733.1 4318580 R 60480 CDS YP_735734.1 113971941 4254177 4320450..4321073 1 NC_008321.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 4321073 gmk 4254177 gmk Shewanella sp. MR-4 guanylate kinase YP_735734.1 4320450 D 60480 CDS YP_735735.1 113971942 4254178 4321132..4321410 1 NC_008321.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 4321410 rpoZ 4254178 rpoZ Shewanella sp. MR-4 DNA-directed RNA polymerase subunit omega YP_735735.1 4321132 D 60480 CDS YP_735736.1 113971943 4254179 4321454..4323556 1 NC_008321.1 KEGG: son:SO0359 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 4323556 4254179 Shewmr4_3615 Shewanella sp. MR-4 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_735736.1 4321454 D 60480 CDS YP_735737.1 113971944 4254180 4323579..4323962 1 NC_008321.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: son:SO0358 endoribonuclease L-PSP, putative; putative endoribonuclease L-PSP 4323962 4254180 Shewmr4_3616 Shewanella sp. MR-4 putative endoribonuclease L-PSP YP_735737.1 4323579 D 60480 CDS YP_735738.1 113971945 4254181 4324195..4325859 1 NC_008321.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0355 AMP-binding protein; AMP-dependent synthetase and ligase 4325859 4254181 Shewmr4_3617 Shewanella sp. MR-4 AMP-dependent synthetase and ligase YP_735738.1 4324195 D 60480 CDS YP_735739.1 113971946 4254182 4326019..4326969 1 NC_008321.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: son:SO0354 sodium/calcium exchanger; CaCA family Na(+)/Ca(+) antiporter 4326969 4254182 Shewmr4_3618 Shewanella sp. MR-4 CaCA family Na(+)/Ca(+) antiporter YP_735739.1 4326019 D 60480 CDS YP_735740.1 113971947 4254183 4327146..4327850 1 NC_008321.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO0353 TPR domain protein; TPR repeat-containing protein 4327850 4254183 Shewmr4_3619 Shewanella sp. MR-4 TPR repeat-containing protein YP_735740.1 4327146 D 60480 CDS YP_735741.1 113971948 4254184 4327934..4329013 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: son:SO0352 sensor histidine kinase, putative; putative signal transduction histidine kinase 4329013 4254184 Shewmr4_3620 Shewanella sp. MR-4 putative signal transduction histidine kinase YP_735741.1 4327934 D 60480 CDS YP_735742.1 113971949 4254185 4329013..4329609 1 NC_008321.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO0351 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 4329609 4254185 Shewmr4_3621 Shewanella sp. MR-4 two component LuxR family transcriptional regulator YP_735742.1 4329013 D 60480 CDS YP_735743.1 113971950 4254186 complement(4329615..4330379) 1 NC_008321.1 KEGG: son:SO0350 hypothetical protein; hypothetical protein 4330379 4254186 Shewmr4_3622 Shewanella sp. MR-4 hypothetical protein YP_735743.1 4329615 R 60480 CDS YP_735744.1 113971951 4254187 complement(4330395..4330760) 1 NC_008321.1 KEGG: son:SO0350 hypothetical protein; hypothetical protein 4330760 4254187 Shewmr4_3623 Shewanella sp. MR-4 hypothetical protein YP_735744.1 4330395 R 60480 CDS YP_735745.1 113971952 4254188 4330977..4332503 1 NC_008321.1 KEGG: son:SO0349 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 4332503 4254188 Shewmr4_3624 Shewanella sp. MR-4 Mg chelatase subunit ChlI YP_735745.1 4330977 D 60480 CDS YP_735746.1 113971953 4254189 4332602..4333504 1 NC_008321.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0348 acyltransferase family protein; putative acyltransferase 4333504 4254189 Shewmr4_3625 Shewanella sp. MR-4 putative acyltransferase YP_735746.1 4332602 D 60480 CDS YP_735747.1 113971954 4254190 4333512..4334453 1 NC_008321.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0347 acyltransferase family protein; putative acyltransferase 4334453 4254190 Shewmr4_3626 Shewanella sp. MR-4 putative acyltransferase YP_735747.1 4333512 D 60480 CDS YP_735748.1 113971955 4254191 complement(4334490..4334954) 1 NC_008321.1 PFAM: protein of unknown function DUF523; KEGG: ppu:PP5158 hypothetical protein; hypothetical protein 4334954 4254191 Shewmr4_3627 Shewanella sp. MR-4 hypothetical protein YP_735748.1 4334490 R 60480 CDS YP_735749.1 113971956 4254192 4335287..4336075 1 NC_008321.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: son:SO0346 transcriptional regulator GntR family; GntR family transcriptional regulator 4336075 4254192 Shewmr4_3628 Shewanella sp. MR-4 GntR family transcriptional regulator YP_735749.1 4335287 D 60480 CDS YP_735750.1 113971957 4254193 4336142..4337020 1 NC_008321.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 4337020 prpB 4254193 prpB Shewanella sp. MR-4 2-methylisocitrate lyase YP_735750.1 4336142 D 60480 CDS YP_735751.1 113971958 4254194 4337254..4338381 1 NC_008321.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 4338381 4254194 Shewmr4_3630 Shewanella sp. MR-4 methylcitrate synthase YP_735751.1 4337254 D 60480 CDS YP_735752.1 113971959 4254195 4338532..4341123 1 NC_008321.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 4341123 4254195 Shewmr4_3631 Shewanella sp. MR-4 aconitate hydratase YP_735752.1 4338532 D 60480 CDS YP_735753.1 113971960 4254196 4341210..4342403 1 NC_008321.1 TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: son:SO0342 hypothetical protein; methylitaconate delta2-delta3-isomerase 4342403 4254196 Shewmr4_3632 Shewanella sp. MR-4 methylitaconate delta2-delta3-isomerase YP_735753.1 4341210 D 60480 CDS YP_735754.1 113971961 4254197 4342684..4347198 1 NC_008321.1 KEGG: son:SO0341 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 4347198 4254197 Shewmr4_3633 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_735754.1 4342684 D 60480 CDS YP_735755.1 113971962 4254198 complement(4347258..4348349) 1 NC_008321.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4348349 4254198 Shewmr4_3634 Shewanella sp. MR-4 branched-chain amino acid aminotransferase YP_735755.1 4347258 R 60480 CDS YP_735756.1 113971963 4254199 complement(4348506..4349321) 1 NC_008321.1 PFAM: protein of unknown function DUF1223; KEGG: hch:HCH_00871 uncharacterized secreted protein; hypothetical protein 4349321 4254199 Shewmr4_3635 Shewanella sp. MR-4 hypothetical protein YP_735756.1 4348506 R 60480 CDS YP_735757.1 113971964 4254200 4349394..4349657 1 NC_008321.1 PFAM: Modulator of Rho-dependent transcription termination; KEGG: son:SO0339 hypothetical transcriptional antiterminator; transcriptional antiterminator, Rof 4349657 4254200 Shewmr4_3636 Shewanella sp. MR-4 transcriptional antiterminator, Rof YP_735757.1 4349394 D 60480 CDS YP_735758.1 113971965 4254201 4349678..4350013 1 NC_008321.1 KEGG: son:SO0338 hypothetical protein; hypothetical protein 4350013 4254201 Shewmr4_3637 Shewanella sp. MR-4 hypothetical protein YP_735758.1 4349678 D 60480 CDS YP_735759.1 113971966 4254202 complement(4350168..4350524) 1 NC_008321.1 PFAM: Endoribonuclease L-PSP; KEGG: son:SO0337 hypothetical translation initiation inhibitor, YjgF family; endoribonuclease L-PSP 4350524 4254202 Shewmr4_3638 Shewanella sp. MR-4 endoribonuclease L-PSP YP_735759.1 4350168 R 60480 CDS YP_735760.1 113971967 4254203 complement(4350581..4352086) 1 NC_008321.1 PFAM: Na+/H+ antiporter NhaC; KEGG: son:SO0336 hypothetical Na+/H+ antiporter; Na+/H+ antiporter NhaC 4352086 4254203 Shewmr4_3639 Shewanella sp. MR-4 Na+/H+ antiporter NhaC YP_735760.1 4350581 R 60480 CDS YP_735761.1 113971968 4254204 4352266..4352487 1 NC_008321.1 PFAM: protein of unknown function DUF904; KEGG: son:SO0335 hypothetical protein; hypothetical protein 4352487 4254204 Shewmr4_3640 Shewanella sp. MR-4 hypothetical protein YP_735761.1 4352266 D 60480 CDS YP_735762.1 113971969 4254205 complement(4352484..4352696) 1 NC_008321.1 PFAM: protein of unknown function DUF1107; KEGG: son:SO0334 hypothetical protein; hypothetical protein 4352696 4254205 Shewmr4_3641 Shewanella sp. MR-4 hypothetical protein YP_735762.1 4352484 R 60480 CDS YP_735763.1 113971970 4254206 complement(4353146..4353757) 1 NC_008321.1 PFAM: DSBA oxidoreductase; KEGG: son:SO0333 thiol:disulfide interchange protein DsbA; DSBA oxidoreductase 4353757 4254206 Shewmr4_3642 Shewanella sp. MR-4 DSBA oxidoreductase YP_735763.1 4353146 R 60480 CDS YP_735764.1 113971971 4254207 complement(4353885..4354940) 1 NC_008321.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4354940 4254207 Shewmr4_3643 Shewanella sp. MR-4 serine/threonine protein kinase YP_735764.1 4353885 R 60480 CDS YP_735765.1 113971972 4254208 complement(4354933..4355238) 1 NC_008321.1 KEGG: son:SO0331 hypothetical protein; hypothetical protein 4355238 4254208 Shewmr4_3644 Shewanella sp. MR-4 hypothetical protein YP_735765.1 4354933 R 60480 CDS YP_735766.1 113971973 4254209 complement(4355238..4356692) 1 NC_008321.1 PFAM: protein of unknown function UPF0061; KEGG: son:SO0330 hypothetical protein; hypothetical protein 4356692 4254209 Shewmr4_3645 Shewanella sp. MR-4 hypothetical protein YP_735766.1 4355238 R 60480 CDS YP_735767.1 113971974 4254210 complement(4356704..4357054) 1 NC_008321.1 KEGG: son:SO0329 hypothetical protein; hypothetical protein 4357054 4254210 Shewmr4_3646 Shewanella sp. MR-4 hypothetical protein YP_735767.1 4356704 R 60480 CDS YP_735768.1 113971975 4254211 complement(4357232..4358149) 1 NC_008321.1 KEGG: son:SO0326 hypothetical protein; hypothetical protein 4358149 4254211 Shewmr4_3647 Shewanella sp. MR-4 hypothetical protein YP_735768.1 4357232 R 60480 CDS YP_735769.1 113971976 4254212 4358401..4358760 1 NC_008321.1 PFAM: DsrE family protein; KEGG: son:SO0325 DsrE-related protein; DsrE family protein 4358760 4254212 Shewmr4_3648 Shewanella sp. MR-4 DsrE family protein YP_735769.1 4358401 D 60480 CDS YP_735770.1 113971977 4254213 4358865..4359266 1 NC_008321.1 KEGG: son:SO0324 hypothetical protein; hypothetical protein 4359266 4254213 Shewmr4_3649 Shewanella sp. MR-4 hypothetical protein YP_735770.1 4358865 D 60480 CDS YP_735771.1 113971978 4254214 4359322..4360254 1 NC_008321.1 KEGG: son:SO0323 hypothetical protein; hypothetical protein 4360254 4254214 Shewmr4_3650 Shewanella sp. MR-4 hypothetical protein YP_735771.1 4359322 D 60480 CDS YP_735772.1 113971979 4254215 4360385..4360966 1 NC_008321.1 KEGG: son:SO0322 hypothetical protein; hypothetical protein 4360966 4254215 Shewmr4_3651 Shewanella sp. MR-4 hypothetical protein YP_735772.1 4360385 D 60480 CDS YP_735773.1 113971980 4254216 complement(4361044..4361658) 1 NC_008321.1 KEGG: son:SO0321 hypothetical protein; hypothetical protein 4361658 4254216 Shewmr4_3652 Shewanella sp. MR-4 hypothetical protein YP_735773.1 4361044 R 60480 CDS YP_735774.1 113971981 4254217 complement(4361735..4362772) 1 NC_008321.1 PFAM: acyltransferase 3; KEGG: son:SO0320 hypothetical protein; acyltransferase 3 4362772 4254217 Shewmr4_3653 Shewanella sp. MR-4 acyltransferase 3 YP_735774.1 4361735 R 60480 CDS YP_735775.1 113971982 4254218 complement(4362774..4364189) 1 NC_008321.1 KEGG: son:SO0319 hypothetical protein; hypothetical protein 4364189 4254218 Shewmr4_3654 Shewanella sp. MR-4 hypothetical protein YP_735775.1 4362774 R 60480 CDS YP_735776.1 113971983 4254219 complement(4364350..4364700) 1 NC_008321.1 PFAM: protein of unknown function DUF1232; KEGG: son:SO0318 hypothetical protein; hypothetical protein 4364700 4254219 Shewmr4_3655 Shewanella sp. MR-4 hypothetical protein YP_735776.1 4364350 R 60480 CDS YP_735777.1 113971984 4254220 4364913..4365836 1 NC_008321.1 PFAM: transposase, IS4 family protein; KEGG: son:SO3296 ISSod12, transposase; IS4 family transposase 4365836 4254220 Shewmr4_3656 Shewanella sp. MR-4 IS4 family transposase YP_735777.1 4364913 D 60480 CDS YP_735778.1 113971985 4254221 4366219..4367181 1 NC_008321.1 PFAM: regulatory protein, LysR; KEGG: vpa:VPA0299 putative transcription regulator protein; LysR family transcriptional regulator 4367181 4254221 Shewmr4_3657 Shewanella sp. MR-4 LysR family transcriptional regulator YP_735778.1 4366219 D 60480 CDS YP_735779.1 113971986 4254222 4367392..4368828 1 NC_008321.1 PFAM: Disulphide bond formation protein DsbB; KEGG: hpj:jhp0542 hypothetical protein; disulfide bond formation protein DsbB 4368828 4254222 Shewmr4_3658 Shewanella sp. MR-4 disulfide bond formation protein DsbB YP_735779.1 4367392 D 60480 CDS YP_735780.1 113971987 4254223 4368940..4371141 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dsy:DSY4603 putative anaerobic dehydrogenase; twin-arginine translocation pathway signal 4371141 4254223 Shewmr4_3659 Shewanella sp. MR-4 twin-arginine translocation pathway signal YP_735780.1 4368940 D 60480 CDS YP_735781.1 113971988 4254224 4371153..4371701 1 NC_008321.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dsy:DSY4602 putative oxidoreductase iron-sulfur subunit; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 4371701 4254224 Shewmr4_3660 Shewanella sp. MR-4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_735781.1 4371153 D 60480 CDS YP_735782.1 113971989 4254225 4371698..4372330 1 NC_008321.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: dsy:DSY4608 uncharacterized component of anaerobic dehydrogenase; cytoplasmic chaperone TorD family protein 4372330 4254225 Shewmr4_3661 Shewanella sp. MR-4 cytoplasmic chaperone TorD family protein YP_735782.1 4371698 D 60480 CDS YP_735783.1 113971990 4254226 4372340..4373305 1 NC_008321.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO4515 formate dehydrogenase, C subunit, putative; formate dehydrogenase subunit gamma 4373305 4254226 Shewmr4_3662 Shewanella sp. MR-4 formate dehydrogenase subunit gamma YP_735783.1 4372340 D 60480 CDS YP_735784.1 113971991 4254227 4373462..4374508 1 NC_008321.1 PFAM: porin, Gram-negative type; KEGG: cps:CPS_3847 porin; porin 4374508 4254227 Shewmr4_3663 Shewanella sp. MR-4 porin YP_735784.1 4373462 D 60480 CDS YP_735785.1 113971992 4254228 complement(4375331..4375879) 1 NC_008321.1 TIGRFAM: YbhB and YbcL; PFAM: PEBP family protein; KEGG: son:SO0316 hypothetical phosphatidylethanolamine-binding protein; PBP family phospholipid-binding protein 4375879 4254228 Shewmr4_3665 Shewanella sp. MR-4 PBP family phospholipid-binding protein YP_735785.1 4375331 R 60480 CDS YP_735786.1 113971993 4254229 4376359..4376463 1 NC_008321.1 KEGG: vch:VCA1065 hypothetical protein; hypothetical protein 4376463 4254229 Shewmr4_3666 Shewanella sp. MR-4 hypothetical protein YP_735786.1 4376359 D 60480 CDS YP_735787.1 113971994 4254230 4376775..4378937 1 NC_008321.1 PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: son:SO0314 ornithine decarboxylase, inducible; ornithine decarboxylase 4378937 4254230 Shewmr4_3667 Shewanella sp. MR-4 ornithine decarboxylase YP_735787.1 4376775 D 60480 CDS YP_735788.1 113971995 4254231 4379023..4380342 1 NC_008321.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 4380342 potE 4254231 potE Shewanella sp. MR-4 putrescine transporter YP_735788.1 4379023 D 60480 CDS YP_735789.1 113971996 4254232 4380467..4381621 1 NC_008321.1 PFAM: porin, Gram-negative type; KEGG: son:SO0312 outer membrane porin, putative; porin 4381621 4254232 Shewmr4_3669 Shewanella sp. MR-4 porin YP_735789.1 4380467 D 60480 CDS YP_735790.1 113971997 4254233 complement(4381823..4384168) 1 NC_008321.1 PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: son:SO0311 hypothetical Fe-S oxidoreductase; hypothetical protein 4384168 4254233 Shewmr4_3670 Shewanella sp. MR-4 hypothetical protein YP_735790.1 4381823 R 60480 CDS YP_735791.1 113971998 4254234 complement(4384381..4384779) 1 NC_008321.1 KEGG: son:SO0309 hypothetical protein; hypothetical protein 4384779 4254234 Shewmr4_3671 Shewanella sp. MR-4 hypothetical protein YP_735791.1 4384381 R 60480 CDS YP_735792.1 113971999 4254235 4384935..4386155 1 NC_008321.1 PFAM: protein of unknown function DUF1212; KEGG: son:SO0308 hypothetical protein; hypothetical protein 4386155 4254235 Shewmr4_3672 Shewanella sp. MR-4 hypothetical protein YP_735792.1 4384935 D 60480 CDS YP_735793.1 113972000 4254236 4386329..4387969 1 NC_008321.1 KEGG: son:SO0306 hypothetical protein; hypothetical protein 4387969 4254236 Shewmr4_3673 Shewanella sp. MR-4 hypothetical protein YP_735793.1 4386329 D 60480 CDS YP_735794.1 113972001 4254237 4388102..4388596 1 NC_008321.1 KEGG: son:SO0302 hypothetical protein; hypothetical protein 4388596 4254237 Shewmr4_3674 Shewanella sp. MR-4 hypothetical protein YP_735794.1 4388102 D 60480 CDS YP_735795.1 113972002 4254238 4389116..4390063 1 NC_008321.1 TIGRFAM: cytochrome C family protein; KEGG: son:SO1427 decaheme cytochrome c; cytochrome C family protein 4390063 4254238 Shewmr4_3675 Shewanella sp. MR-4 cytochrome C family protein YP_735795.1 4389116 D 60480 CDS YP_735796.1 113972003 4254239 4390074..4392077 1 NC_008321.1 KEGG: son:SO1428 outer membrane protein; outer membrane protein 4392077 4254239 Shewmr4_3676 Shewanella sp. MR-4 outer membrane protein YP_735796.1 4390074 D 60480 CDS YP_735797.1 113972004 4254240 4392097..4394613 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO1429 anaerobic dimethyl sulfoxide reductase, A subunit; anaerobic dimethyl sulfoxide reductase subunit A 4394613 4254240 Shewmr4_3677 Shewanella sp. MR-4 anaerobic dimethyl sulfoxide reductase subunit A YP_735797.1 4392097 D 60480 CDS YP_735798.1 113972005 4254241 4394627..4395286 1 NC_008321.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1430 anaerobic dimethyl sulfoxide reductase, B subunit; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 4395286 4254241 Shewmr4_3678 Shewanella sp. MR-4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_735798.1 4394627 D 60480 CDS YP_735799.1 113972006 4254242 4395299..4396012 1 NC_008321.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO1431 hypothetical protein; cytoplasmic chaperone TorD family protein 4396012 4254242 Shewmr4_3679 Shewanella sp. MR-4 cytoplasmic chaperone TorD family protein YP_735799.1 4395299 D 60480 CDS YP_735800.1 113972007 4254243 4396043..4396492 1 NC_008321.1 KEGG: son:SO1432 hypothetical protein; hypothetical protein 4396492 4254243 Shewmr4_3680 Shewanella sp. MR-4 hypothetical protein YP_735800.1 4396043 D 60480 CDS YP_735801.1 113972008 4254244 4396960..4398426 1 NC_008321.1 PFAM: KAP P-loop domain protein; KEGG: sdn:Sden_3419 kap P-loop; KAP P-loop domain-containing protein 4398426 4254244 Shewmr4_3681 Shewanella sp. MR-4 KAP P-loop domain-containing protein YP_735801.1 4396960 D 60480 CDS YP_735802.1 113972009 4254245 complement(4398588..4400048) 1 NC_008321.1 KEGG: vpa:VP0643 hypothetical protein; hypothetical protein 4400048 4254245 Shewmr4_3682 Shewanella sp. MR-4 hypothetical protein YP_735802.1 4398588 R 60480 CDS YP_735803.1 113972010 4254246 complement(4400550..4401395) 1 NC_008321.1 TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO0301 hypothetical methyltransferase; hypothetical protein 4401395 4254246 Shewmr4_3683 Shewanella sp. MR-4 hypothetical protein YP_735803.1 4400550 R 60480 CDS YP_735804.1 113972011 4254247 4401484..4403367 1 NC_008321.1 PFAM: LppC family lipoprotein; KEGG: son:SO0300 lipoprotein, putative; LppC family lipoprotein 4403367 4254247 Shewmr4_3684 Shewanella sp. MR-4 LppC family lipoprotein YP_735804.1 4401484 D 60480 CDS YP_735805.1 113972012 4254248 4403364..4403690 1 NC_008321.1 PFAM: protein of unknown function UPF0102; KEGG: son:SO0299 predicted endonuclease; hypothetical protein 4403690 4254248 Shewmr4_3685 Shewanella sp. MR-4 hypothetical protein YP_735805.1 4403364 D 60480 CDS YP_735806.1 113972013 4254249 4403797..4404390 1 NC_008321.1 TIGRFAM: phosphoheptose isomerase; KEGG: son:SO0298 phosphoheptose isomerase; phosphoheptose isomerase 4404390 4254249 Shewmr4_3686 Shewanella sp. MR-4 phosphoheptose isomerase YP_735806.1 4403797 D 60480 CDS YP_735807.1 113972014 4254250 4404387..4404953 1 NC_008321.1 PFAM: transport-associated; KEGG: son:SO0297 lipoprotein, putative; transport-associated 4404953 4254250 Shewmr4_3687 Shewanella sp. MR-4 transport-associated YP_735807.1 4404387 D 60480 CDS YP_735808.1 113972015 4254251 complement(4404972..4405892) 1 NC_008321.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO0296 integral membrane domain protein; hypothetical protein 4405892 4254251 Shewmr4_3688 Shewanella sp. MR-4 hypothetical protein YP_735808.1 4404972 R 60480 CDS YP_735809.1 113972016 4254252 4406013..4406885 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0295 transcriptional regulator, LysR family; LysR family transcriptional regulator 4406885 4254252 Shewmr4_3689 Shewanella sp. MR-4 LysR family transcriptional regulator YP_735809.1 4406013 D 60480 CDS YP_735810.1 113972017 4254253 complement(4406988..4407986) 1 NC_008321.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 4407986 4254253 Shewmr4_3690 Shewanella sp. MR-4 tryptophanyl-tRNA synthetase YP_735810.1 4406988 R 60480 CDS YP_735811.1 113972018 4254254 complement(4408024..4408707) 1 NC_008321.1 KEGG: son:SO0293 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase 4408707 4254254 Shewmr4_3691 Shewanella sp. MR-4 phosphoglycolate phosphatase YP_735811.1 4408024 R 60480 CDS YP_735812.1 113972019 4254255 complement(4408707..4409384) 1 NC_008321.1 KEGG: son:SO0292 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; ribulose-5-phosphate 3-epimerase 4409384 4254255 Shewmr4_3692 Shewanella sp. MR-4 ribulose-5-phosphate 3-epimerase YP_735812.1 4408707 R 60480 CDS YP_735813.1 113972020 4254256 4409647..4410012 1 NC_008321.1 KEGG: son:SO0291 hypothetical protein; hypothetical protein 4410012 4254256 Shewmr4_3693 Shewanella sp. MR-4 hypothetical protein YP_735813.1 4409647 D 60480 CDS YP_735814.1 113972021 4254257 4410012..4410197 1 NC_008321.1 KEGG: son:SO0290 hypothetical protein; hypothetical protein 4410197 4254257 Shewmr4_3694 Shewanella sp. MR-4 hypothetical protein YP_735814.1 4410012 D 60480 CDS YP_735815.1 113972022 4254258 complement(4410222..4411061) 1 NC_008321.1 KEGG: son:SO0289 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 4411061 4254258 Shewmr4_3695 Shewanella sp. MR-4 DNA adenine methylase YP_735815.1 4410222 R 60480 CDS YP_735816.1 113972023 4254259 complement(4411110..4412525) 1 NC_008321.1 PFAM: Sporulation domain protein; SMART: AAA ATPase; KEGG: son:SO0288 DamX domain protein; sporulation domain-containing protein 4412525 4254259 Shewmr4_3696 Shewanella sp. MR-4 sporulation domain-containing protein YP_735816.1 4411110 R 60480 CDS YP_735817.1 113972024 4254260 complement(4412544..4413623) 1 NC_008321.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 4413623 aroB 4254260 aroB Shewanella sp. MR-4 3-dehydroquinate synthase YP_735817.1 4412544 R 60480 CDS YP_735818.1 113972025 4254261 complement(4413629..4414144) 1 NC_008321.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 4414144 aroK 4254261 aroK Shewanella sp. MR-4 shikimate kinase I YP_735818.1 4413629 R 60480 CDS YP_735819.1 113972026 4254262 complement(4414364..4416418) 1 NC_008321.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain protein; KEGG: son:SO0285 type IV pilus biogenesis protein PilQ; type IV pilus secretin PilQ 4416418 4254262 Shewmr4_3699 Shewanella sp. MR-4 type IV pilus secretin PilQ YP_735819.1 4414364 R 60480 CDS YP_735820.1 113972027 4254263 complement(4416440..4416955) 1 NC_008321.1 PFAM: Pilus assembly protein, PilQ; KEGG: son:SO0284 type IV pilus biogenesis protein PilP; pilus assembly protein, PilQ 4416955 4254263 Shewmr4_3700 Shewanella sp. MR-4 pilus assembly protein, PilQ YP_735820.1 4416440 R 60480 CDS YP_735821.1 113972028 4254264 complement(4416955..4417581) 1 NC_008321.1 PFAM: Pilus assembly protein, PilO; KEGG: son:SO0283 type IV pilus biogenesis protein PilO; pilus assembly protein, PilO 4417581 4254264 Shewmr4_3701 Shewanella sp. MR-4 pilus assembly protein, PilO YP_735821.1 4416955 R 60480 CDS YP_735822.1 113972029 4254265 complement(4417578..4418162) 1 NC_008321.1 PFAM: Fimbrial assembly family protein; KEGG: son:SO0282 type IV pilus biogenesis protein PilN; fimbrial assembly family protein 4418162 4254265 Shewmr4_3702 Shewanella sp. MR-4 fimbrial assembly family protein YP_735822.1 4417578 R 60480 CDS YP_735823.1 113972030 4254266 complement(4418150..4419229) 1 NC_008321.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: son:SO0281 type IV pilus biogenesis protein PilM; type IV pilus assembly protein PilM 4419229 4254266 Shewmr4_3703 Shewanella sp. MR-4 type IV pilus assembly protein PilM YP_735823.1 4418150 R 60480 CDS YP_735824.1 113972031 4254267 4419421..4421940 1 NC_008321.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: son:SO0280 penicillin-binding protein 1A; 1A family penicillin-binding protein 4421940 4254267 Shewmr4_3704 Shewanella sp. MR-4 1A family penicillin-binding protein YP_735824.1 4419421 D 60480 CDS YP_735825.1 113972032 4254268 complement(4422001..4423368) 1 NC_008321.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4423368 4254268 Shewmr4_3705 Shewanella sp. MR-4 argininosuccinate lyase YP_735825.1 4422001 R 60480 CDS YP_735826.1 113972033 4254269 complement(4423452..4424675) 1 NC_008321.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 4424675 4254269 Shewmr4_3706 Shewanella sp. MR-4 argininosuccinate synthase YP_735826.1 4423452 R 60480 CDS YP_735827.1 113972034 4254270 complement(4424736..4425641) 1 NC_008321.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 4425641 4254270 Shewmr4_3707 Shewanella sp. MR-4 ornithine carbamoyltransferase YP_735827.1 4424736 R 60480 CDS YP_735828.1 113972035 4254271 complement(4425654..4426436) 1 NC_008321.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4426436 4254271 Shewmr4_3708 Shewanella sp. MR-4 acetylglutamate kinase YP_735828.1 4425654 R 60480 CDS YP_735829.1 113972036 4254272 complement(4426468..4427448) 1 NC_008321.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 4427448 argC 4254272 argC Shewanella sp. MR-4 N-acetyl-gamma-glutamyl-phosphate reductase YP_735829.1 4426468 R 60480 CDS YP_735830.1 113972037 4254273 4428114..4430783 1 NC_008321.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4430783 4254273 Shewmr4_3710 Shewanella sp. MR-4 phosphoenolpyruvate carboxylase YP_735830.1 4428114 D 60480 CDS YP_735831.1 113972038 4254274 4430783..4431328 1 NC_008321.1 PFAM: protein of unknown function DUF1439; KEGG: son:SO0273 hypothetical protein; hypothetical protein 4431328 4254274 Shewmr4_3711 Shewanella sp. MR-4 hypothetical protein YP_735831.1 4430783 D 60480 CDS YP_735832.1 113972039 4254275 complement(4431427..4432704) 1 NC_008321.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: son:SO0272 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA 4432704 4254275 Shewmr4_3712 Shewanella sp. MR-4 competence/damage-inducible protein CinA YP_735832.1 4431427 R 60480 CDS YP_735833.1 113972040 4254276 complement(4438748..4439653) 1 NC_008321.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: son:SO4502 hypothetical protein; DNA binding domain-containing protein 4439653 4254276 Shewmr4_3713 Shewanella sp. MR-4 DNA binding domain-containing protein YP_735833.1 4438748 R 60480 CDS YP_735834.1 113972041 4254277 complement(4439710..4440606) 1 NC_008321.1 PFAM: formate dehydrogenase, subunit FdhD; KEGG: son:SO4503 formate dehydrogenase accessory protein FdhD, putative; formate dehydrogenase subunit FdhD 4440606 4254277 Shewmr4_3714 Shewanella sp. MR-4 formate dehydrogenase subunit FdhD YP_735834.1 4439710 R 60480 CDS YP_735835.1 113972042 4254278 4440903..4441367 1 NC_008321.1 KEGG: son:SO4504 hypothetical protein; hypothetical protein 4441367 4254278 Shewmr4_3715 Shewanella sp. MR-4 hypothetical protein YP_735835.1 4440903 D 60480 CDS YP_735836.1 113972043 4254279 4441367..4442023 1 NC_008321.1 KEGG: son:SO4505 hypothetical protein; hypothetical protein 4442023 4254279 Shewmr4_3716 Shewanella sp. MR-4 hypothetical protein YP_735836.1 4441367 D 60480 CDS YP_735837.1 113972044 4254280 4442210..4443871 1 NC_008321.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4506 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 4443871 4254280 Shewmr4_3717 Shewanella sp. MR-4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_735837.1 4442210 D 60480 CDS YP_735838.1 113972045 4254281 4443882..4444559 1 NC_008321.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO4507 TorA specific chaperone, putative; cytoplasmic chaperone TorD family protein 4444559 4254281 Shewmr4_3718 Shewanella sp. MR-4 cytoplasmic chaperone TorD family protein YP_735838.1 4443882 D 60480 CDS YP_735839.1 113972046 4254282 4444726..4444923 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: son:SO4508 hypothetical protein; twin-arginine translocation pathway signal 4444923 4254282 Shewmr4_3719 Shewanella sp. MR-4 twin-arginine translocation pathway signal YP_735839.1 4444726 D 60480 CDS YP_735840.1 113972047 4254283 4444941..4447793 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4509 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 4447793 4254283 Shewmr4_3720 Shewanella sp. MR-4 formate dehydrogenase subunit alpha YP_735840.1 4444941 D 60480 CDS YP_735841.1 113972048 4254284 4447820..4448416 1 NC_008321.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4510 formate dehydrogenase, iron-sulfur subunit; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 4448416 4254284 Shewmr4_3721 Shewanella sp. MR-4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_735841.1 4447820 D 60480 CDS YP_735842.1 113972049 4254285 4448466..4449494 1 NC_008321.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO4511 formate dehydrogenase, C subunit, putative; formate dehydrogenase subunit gamma 4449494 4254285 Shewmr4_3722 Shewanella sp. MR-4 formate dehydrogenase subunit gamma YP_735842.1 4448466 D 60480 CDS YP_735843.1 113972050 4254286 4449873..4450073 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: son:SO4512 hypothetical protein; twin-arginine translocation pathway signal 4450073 4254286 Shewmr4_3723 Shewanella sp. MR-4 twin-arginine translocation pathway signal YP_735843.1 4449873 D 60480 CDS YP_735844.1 113972051 4254287 4450091..4452943 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4513 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 4452943 4254287 Shewmr4_3724 Shewanella sp. MR-4 formate dehydrogenase subunit alpha YP_735844.1 4450091 D 60480 CDS YP_735845.1 113972052 4254288 4452973..4453542 1 NC_008321.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4514 formate dehydrogenase, iron-sulfur subunit; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 4453542 4254288 Shewmr4_3725 Shewanella sp. MR-4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_735845.1 4452973 D 60480 CDS YP_735846.1 113972053 4254289 4453619..4454602 1 NC_008321.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO4515 formate dehydrogenase, C subunit, putative; formate dehydrogenase subunit gamma 4454602 4254289 Shewmr4_3726 Shewanella sp. MR-4 formate dehydrogenase subunit gamma YP_735846.1 4453619 D 60480 CDS YP_735847.1 113972054 4254290 complement(4454683..4456740) 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4516 ferric vibriobactin receptor; TonB-dependent receptor 4456740 4254290 Shewmr4_3727 Shewanella sp. MR-4 TonB-dependent receptor YP_735847.1 4454683 R 60480 CDS YP_735848.1 113972055 4254291 4457300..4458883 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRB0028 hypothetical methyl-accepting chemotaxisprotein; methyl-accepting chemotaxis sensory transducer 4458883 4254291 Shewmr4_3728 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_735848.1 4457300 D 60480 CDS YP_735849.1 113972056 4254292 complement(4459387..4460316) 1 NC_008321.1 PFAM: Bile acid:sodium symporter; KEGG: son:SO4519 sodium-dependent transporter; bile acid:sodium symporter 4460316 4254292 Shewmr4_3729 Shewanella sp. MR-4 bile acid:sodium symporter YP_735849.1 4459387 R 60480 CDS YP_735850.1 113972057 4254293 4460703..4462040 1 NC_008321.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4462040 4254293 Shewmr4_3730 Shewanella sp. MR-4 coproporphyrinogen III oxidase YP_735850.1 4460703 D 60480 CDS YP_735851.1 113972058 4254294 4462156..4462389 1 NC_008321.1 KEGG: son:SO4521 hypothetical protein; hypothetical protein 4462389 4254294 Shewmr4_3731 Shewanella sp. MR-4 hypothetical protein YP_735851.1 4462156 D 60480 CDS YP_735852.1 113972059 4254295 4462418..4463353 1 NC_008321.1 KEGG: son:SO4522 hypothetical protein; hypothetical protein 4463353 4254295 Shewmr4_3732 Shewanella sp. MR-4 hypothetical protein YP_735852.1 4462418 D 60480 CDS YP_735853.1 113972060 4254296 4463530..4464402 1 NC_008321.1 PFAM: Patatin; KEGG: son:SO4525 hypothetical protein; patatin 4464402 4254296 Shewmr4_3733 Shewanella sp. MR-4 patatin YP_735853.1 4463530 D 60480 CDS YP_735854.1 113972061 4254297 complement(4464395..4465330) 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4525.1 hypothetical transcriptional regulator, LysR family; LysR family transcriptional regulator 4465330 4254297 Shewmr4_3734 Shewanella sp. MR-4 LysR family transcriptional regulator YP_735854.1 4464395 R 60480 CDS YP_735855.1 113972062 4254298 complement(4465331..4466185) 1 NC_008321.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4527 integral membrane domain protein; hypothetical protein 4466185 4254298 Shewmr4_3735 Shewanella sp. MR-4 hypothetical protein YP_735855.1 4465331 R 60480 CDS YP_735856.1 113972063 4254299 4466383..4466847 1 NC_008321.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO4529 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase 4466847 4254299 Shewmr4_3736 Shewanella sp. MR-4 RNA methyltransferase YP_735856.1 4466383 D 60480 CDS YP_735857.1 113972064 4254300 4467402..4468280 1 NC_008321.1 KEGG: chy:CHY_2509 hypothetical protein; hypothetical protein 4468280 4254300 Shewmr4_3737 Shewanella sp. MR-4 hypothetical protein YP_735857.1 4467402 D 60480 CDS YP_735858.1 113972065 4254301 4468314..4469174 1 NC_008321.1 KEGG: csa:Csal_2904 hypothetical protein; hypothetical protein 4469174 4254301 Shewmr4_3738 Shewanella sp. MR-4 hypothetical protein YP_735858.1 4468314 D 60480 CDS YP_735859.1 113972066 4254302 complement(4469294..4469848) 1 NC_008321.1 KEGG: son:SO4535 hypothetical protein; hypothetical protein 4469848 4254302 Shewmr4_3739 Shewanella sp. MR-4 hypothetical protein YP_735859.1 4469294 R 60480 CDS YP_735860.1 113972067 4254303 4470075..4472120 1 NC_008321.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: son:SO4537 peptidase, putative; peptidase S9 prolyl oligopeptidase 4472120 4254303 Shewmr4_3740 Shewanella sp. MR-4 peptidase S9 prolyl oligopeptidase YP_735860.1 4470075 D 60480 CDS YP_735861.1 113972068 4254304 complement(4472195..4473655) 1 NC_008321.1 PFAM: peptidase M16 domain protein; KEGG: sdn:Sden_3485 peptidase M16-like protein; peptidase M16 domain-containing protein 4473655 4254304 Shewmr4_3741 Shewanella sp. MR-4 peptidase M16 domain-containing protein YP_735861.1 4472195 R 60480 CDS YP_735862.1 113972069 4254305 complement(4473652..4474983) 1 NC_008321.1 PFAM: peptidase M16 domain protein; KEGG: son:SO4537.2 hypothetical Zn-dependent peptidase; peptidase M16 domain-containing protein 4474983 4254305 Shewmr4_3742 Shewanella sp. MR-4 peptidase M16 domain-containing protein YP_735862.1 4473652 R 60480 CDS YP_735863.1 113972070 4254306 complement(4475121..4476518) 1 NC_008321.1 KEGG: sdn:Sden_3487 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; carboxypeptidase 4476518 4254306 Shewmr4_3743 Shewanella sp. MR-4 carboxypeptidase YP_735863.1 4475121 R 60480 CDS YP_735864.1 113972071 4254307 4476839..4477834 1 NC_008321.1 KEGG: rfr:Rfer_3046 transcriptional factor; hypothetical protein 4477834 4254307 Shewmr4_3744 Shewanella sp. MR-4 hypothetical protein YP_735864.1 4476839 D 60480 CDS YP_735865.1 113972072 4254308 4477916..4479052 1 NC_008321.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: noc:Noc_2855 cell division protein FtsZ; cell division protein FtsZ 4479052 4254308 Shewmr4_3745 Shewanella sp. MR-4 cell division protein FtsZ YP_735865.1 4477916 D 60480 CDS YP_735866.1 113972073 4254309 complement(4479069..4479707) 1 NC_008321.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4550 methyltransferase domain protein; type 12 methyltransferase 4479707 4254309 Shewmr4_3746 Shewanella sp. MR-4 type 12 methyltransferase YP_735866.1 4479069 R 60480 CDS YP_735867.1 113972074 4254310 complement(4479770..4480123) 1 NC_008321.1 KEGG: son:SO4551 hypothetical protein; hypothetical protein 4480123 4254310 Shewmr4_3747 Shewanella sp. MR-4 hypothetical protein YP_735867.1 4479770 R 60480 CDS YP_735868.1 113972075 4254311 4480415..4482535 1 NC_008321.1 KEGG: son:SO4552 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 4482535 4254311 Shewmr4_3748 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_735868.1 4480415 D 60480 CDS YP_735869.1 113972076 4254312 complement(4482803..4483369) 1 NC_008321.1 PFAM: DTW domain containing protein; KEGG: son:SO4554 hypothetical protein; DTW domain-containing protein 4483369 4254312 Shewmr4_3749 Shewanella sp. MR-4 DTW domain-containing protein YP_735869.1 4482803 R 60480 CDS YP_735870.1 113972077 4254313 complement(4483531..4484739) 1 NC_008321.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4555 drug resistance transporter, Bcr/CflA family protein; Bcr/CflA subfamily drug resistance transporter 4484739 4254313 Shewmr4_3750 Shewanella sp. MR-4 Bcr/CflA subfamily drug resistance transporter YP_735870.1 4483531 R 60480 CDS YP_735871.1 113972078 4254314 4484855..4485814 1 NC_008321.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4556 transcriptional regulator, LysR family; LysR family transcriptional regulator 4485814 4254314 Shewmr4_3751 Shewanella sp. MR-4 LysR family transcriptional regulator YP_735871.1 4484855 D 60480 CDS YP_735872.1 113972079 4254315 complement(4485877..4487748) 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: son:SO4557 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4487748 4254315 Shewmr4_3752 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_735872.1 4485877 R 60480 CDS YP_735873.1 113972080 4254316 4488182..4488517 1 NC_008321.1 KEGG: son:SO4558 hypothetical protein; hypothetical protein 4488517 4254316 Shewmr4_3753 Shewanella sp. MR-4 hypothetical protein YP_735873.1 4488182 D 60480 CDS YP_735874.1 113972081 4254317 complement(4488520..4489977) 1 NC_008321.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4559 hypothetical protein; Sel1 domain-containing protein 4489977 4254317 Shewmr4_3754 Shewanella sp. MR-4 Sel1 domain-containing protein YP_735874.1 4488520 R 60480 CDS YP_735875.1 113972082 4254318 complement(4490014..4490721) 1 NC_008321.1 KEGG: son:SO4560 hypothetical protein; hypothetical protein 4490721 4254318 Shewmr4_3755 Shewanella sp. MR-4 hypothetical protein YP_735875.1 4490014 R 60480 CDS YP_735876.1 113972083 4254319 4490912..4491439 1 NC_008321.1 KEGG: son:SO4561 hypothetical protein; hypothetical protein 4491439 4254319 Shewmr4_3756 Shewanella sp. MR-4 hypothetical protein YP_735876.1 4490912 D 60480 CDS YP_735877.1 113972084 4254320 4491536..4491997 1 NC_008321.1 PFAM: protein of unknown function DUF1332; KEGG: son:SO4562 hypothetical protein; hypothetical protein 4491997 4254320 Shewmr4_3757 Shewanella sp. MR-4 hypothetical protein YP_735877.1 4491536 D 60480 CDS YP_735878.1 113972085 4254321 complement(4492086..4492910) 1 NC_008321.1 KEGG: son:SO4563 hypothetical protein; putative signal transduction protein 4492910 4254321 Shewmr4_3758 Shewanella sp. MR-4 putative signal transduction protein YP_735878.1 4492086 R 60480 CDS YP_735879.1 113972086 4254322 4493206..4493817 1 NC_008321.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO4564 TonB2 protein, putative; TonB family protein 4493817 4254322 Shewmr4_3759 Shewanella sp. MR-4 TonB family protein YP_735879.1 4493206 D 60480 CDS YP_735880.1 113972087 4254323 complement(4493890..4495158) 1 NC_008321.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH 4495158 4254323 Shewmr4_3760 Shewanella sp. MR-4 inner membrane protein YjeH YP_735880.1 4493890 R 60480 CDS YP_735881.1 113972088 4254324 4495386..4495817 1 NC_008321.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: son:SO4567 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4495817 4254324 Shewmr4_3761 Shewanella sp. MR-4 AsnC family transcriptional regulator YP_735881.1 4495386 D 60480 CDS YP_735882.1 113972089 4254325 complement(4496082..4497023) 1 NC_008321.1 PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4568 formate-dependent nitrite reductase, nrfD protein; polysulfide reductase, NrfD 4497023 4254325 Shewmr4_3762 Shewanella sp. MR-4 polysulfide reductase, NrfD YP_735882.1 4496082 R 60480 CDS YP_735883.1 113972090 4254326 complement(4497020..4497706) 1 NC_008321.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: vvy:VV1252 formate-dependent nitrite reductase complex, Fe-S protein; twin-arginine translocation pathway signal 4497706 4254326 Shewmr4_3763 Shewanella sp. MR-4 twin-arginine translocation pathway signal YP_735883.1 4497020 R 60480 CDS YP_735884.1 113972091 4254327 complement(4497711..4498175) 1 NC_008321.1 KEGG: sfx:S3598 formate-dependent nitrite reductase; formate-dependent nitrite reductase 4498175 4254327 Shewmr4_3764 Shewanella sp. MR-4 formate-dependent nitrite reductase YP_735884.1 4497711 R 60480 CDS YP_735885.1 113972092 4254328 complement(4498253..4498726) 1 NC_008321.1 hypothetical protein 4498726 4254328 Shewmr4_3765 Shewanella sp. MR-4 hypothetical protein YP_735885.1 4498253 R 60480 CDS YP_735886.1 113972093 4254329 4499141..4500109 1 NC_008321.1 PFAM: regulatory protein, LysR; KEGG: son:SO4571 transcriptional regulator, LysR family; LysR family transcriptional regulator 4500109 4254329 Shewmr4_3766 Shewanella sp. MR-4 LysR family transcriptional regulator YP_735886.1 4499141 D 60480 CDS YP_735887.1 113972094 4254330 4500284..4502005 1 NC_008321.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 4502005 4254330 Shewmr4_3767 Shewanella sp. MR-4 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_735887.1 4500284 D 60480 CDS YP_735888.1 113972095 4254331 4502005..4502808 1 NC_008321.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO4574 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold domain-containing protein 4502808 4254331 Shewmr4_3768 Shewanella sp. MR-4 alpha/beta hydrolase fold domain-containing protein YP_735888.1 4502005 D 60480 CDS YP_735889.1 113972096 4254332 4502831..4503880 1 NC_008321.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 4503880 4254332 Shewmr4_3769 Shewanella sp. MR-4 O-succinylbenzoate synthase YP_735889.1 4502831 D 60480 CDS YP_735890.1 113972097 4254333 4503887..4505362 1 NC_008321.1 TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO4576 O-succinylbenzoic acid--CoA ligase; O-succinylbenzoate-CoA ligase 4505362 4254333 Shewmr4_3770 Shewanella sp. MR-4 O-succinylbenzoate-CoA ligase YP_735890.1 4503887 D 60480 CDS YP_735891.1 113972098 4254334 complement(4505434..4506291) 1 NC_008321.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 4506291 4254334 Shewmr4_3771 Shewanella sp. MR-4 RNA polymerase factor sigma-32 YP_735891.1 4505434 R 60480 CDS YP_735892.1 113972099 4254335 complement(4506522..4507487) 1 NC_008321.1 PFAM: protein of unknown function DUF214; KEGG: son:SO4584 cell division ABC transporter, permease protein FtsX; cell division protein FtsX 4507487 4254335 Shewmr4_3772 Shewanella sp. MR-4 cell division protein FtsX YP_735892.1 4506522 R 60480 CDS YP_735893.1 113972100 4254336 complement(4507484..4508185) 1 NC_008321.1 KEGG: son:SO4585 cell division ABC transporter, ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 4508185 4254336 Shewmr4_3773 Shewanella sp. MR-4 cell division ATP-binding protein FtsE YP_735893.1 4507484 R 60480 CDS YP_735894.1 113972101 4254337 complement(4508189..4509937) 1 NC_008321.1 KEGG: son:SO4586 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 4509937 4254337 Shewmr4_3774 Shewanella sp. MR-4 signal recognition particle-docking protein FtsY YP_735894.1 4508189 R 60480 CDS YP_735895.1 113972102 4254338 4510151..4510798 1 NC_008321.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: son:SO4587 putative methylase; putative methyltransferase 4510798 4254338 Shewmr4_3775 Shewanella sp. MR-4 putative methyltransferase YP_735895.1 4510151 D 60480 CDS YP_735896.1 113972103 4254339 4510800..4511075 1 NC_008321.1 PFAM: protein of unknown function DUF1145; KEGG: son:SO4588 hypothetical protein; hypothetical protein 4511075 4254339 Shewmr4_3776 Shewanella sp. MR-4 hypothetical protein YP_735896.1 4510800 D 60480 CDS YP_735897.1 113972104 4254340 complement(4511146..4511709) 1 NC_008321.1 PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO4591 tetraheme cytochrome c; NapC/NirT cytochrome c domain-containing protein 4511709 4254340 Shewmr4_3777 Shewanella sp. MR-4 NapC/NirT cytochrome c domain-containing protein YP_735897.1 4511146 R 60480 CDS YP_735898.1 113972105 4254341 4512123..4512485 1 NC_008321.1 KEGG: son:SO4592 hypothetical protein; hypothetical protein 4512485 4254341 Shewmr4_3778 Shewanella sp. MR-4 hypothetical protein YP_735898.1 4512123 D 60480 CDS YP_735899.1 113972106 4254342 4512588..4513043 1 NC_008321.1 KEGG: son:SO4593 hypothetical protein; hypothetical protein 4513043 4254342 Shewmr4_3779 Shewanella sp. MR-4 hypothetical protein YP_735899.1 4512588 D 60480 CDS YP_735900.1 113972107 4254343 4513116..4513592 1 NC_008321.1 KEGG: son:SO4594 hypothetical protein; hypothetical protein 4513592 4254343 Shewmr4_3780 Shewanella sp. MR-4 hypothetical protein YP_735900.1 4513116 D 60480 CDS YP_735901.1 113972108 4254344 4513770..4514072 1 NC_008321.1 KEGG: son:SO4596 copper-transporting ATPase domain protein; copper-transporting ATPase domain-containing protein 4514072 4254344 Shewmr4_3781 Shewanella sp. MR-4 copper-transporting ATPase domain-containing protein YP_735901.1 4513770 D 60480 CDS YP_735902.1 113972109 4254345 4514094..4515602 1 NC_008321.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO4597 heavy metal efflux system protein, putative; RND family efflux transporter MFP subunit 4515602 4254345 Shewmr4_3782 Shewanella sp. MR-4 RND family efflux transporter MFP subunit YP_735902.1 4514094 D 60480 CDS YP_735903.1 113972110 4254346 4515612..4518749 1 NC_008321.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SOA0153 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 4518749 4254346 Shewmr4_3783 Shewanella sp. MR-4 CzcA family heavy metal efflux protein YP_735903.1 4515612 D 60480 CDS YP_735904.1 113972111 4254347 4518928..4520085 1 NC_008321.1 PFAM: ribonuclease T2; KEGG: son:SO4599 ribonuclease, T2 family; ribonuclease T2 4520085 4254347 Shewmr4_3784 Shewanella sp. MR-4 ribonuclease T2 YP_735904.1 4518928 D 60480 CDS YP_735905.1 113972112 4254348 4520312..4522273 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vvy:VV1004 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4522273 4254348 Shewmr4_3785 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_735905.1 4520312 D 60480 CDS YP_735906.1 113972113 4254349 complement(4522386..4523162) 1 NC_008321.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO4600 antigen, putative; glyoxalase/bleomycin resistance protein/dioxygenase 4523162 4254349 Shewmr4_3786 Shewanella sp. MR-4 glyoxalase/bleomycin resistance protein/dioxygenase YP_735906.1 4522386 R 60480 CDS YP_735907.1 113972114 4254350 complement(4523295..4524551) 1 NC_008321.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: son:SO4601 tryptophan-specific transport protein; aromatic amino acid transporter 4524551 4254350 Shewmr4_3787 Shewanella sp. MR-4 aromatic amino acid transporter YP_735907.1 4523295 R 60480 CDS YP_735908.1 113972115 4254351 complement(4524551..4526974) 1 NC_008321.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4526974 4254351 Shewmr4_3788 Shewanella sp. MR-4 glycerol-3-phosphate acyltransferase YP_735908.1 4524551 R 60480 CDS YP_735909.1 113972116 4254352 4527136..4527756 1 NC_008321.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 4527756 4254352 Shewmr4_3789 Shewanella sp. MR-4 LexA repressor YP_735909.1 4527136 D 60480 CDS YP_735910.1 113972117 4254353 4527753..4528265 1 NC_008321.1 KEGG: son:SO4604 hypothetical protein; hypothetical protein 4528265 4254353 Shewmr4_3790 Shewanella sp. MR-4 hypothetical protein YP_735910.1 4527753 D 60480 CDS YP_735911.1 113972118 4254354 4528673..4530214 1 NC_008321.1 PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: son:SO4606 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 4530214 4254354 Shewmr4_3791 Shewanella sp. MR-4 cytochrome c oxidase subunit II YP_735911.1 4528673 D 60480 CDS YP_735912.1 113972119 4254355 4530224..4531816 1 NC_008321.1 PFAM: cytochrome c oxidase, subunit I; KEGG: son:SO4607 cytochrome c oxidase, subunit I; cytochrome-c oxidase 4531816 4254355 Shewmr4_3792 Shewanella sp. MR-4 cytochrome-c oxidase YP_735912.1 4530224 D 60480 CDS YP_735913.1 113972120 4254356 4531818..4532399 1 NC_008321.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 4532399 4254356 Shewmr4_3793 Shewanella sp. MR-4 cytochrome C oxidase assembly protein YP_735913.1 4531818 D 60480 CDS YP_735914.1 113972121 4254357 4532396..4533271 1 NC_008321.1 PFAM: cytochrome c oxidase, subunit III; KEGG: son:SO4609 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 4533271 4254357 Shewmr4_3794 Shewanella sp. MR-4 cytochrome c oxidase subunit III YP_735914.1 4532396 D 60480 CDS YP_735915.1 113972122 4254358 complement(4533300..4533446) 1 NC_008321.1 KEGG: son:SO4610 hypothetical protein; hypothetical protein 4533446 4254358 Shewmr4_3795 Shewanella sp. MR-4 hypothetical protein YP_735915.1 4533300 R 60480 CDS YP_735916.1 113972123 4254359 4533475..4534386 1 NC_008321.1 KEGG: son:SO4611 hypothetical protein; hypothetical protein 4534386 4254359 Shewmr4_3796 Shewanella sp. MR-4 hypothetical protein YP_735916.1 4533475 D 60480 CDS YP_735917.1 113972124 4254360 4534454..4534999 1 NC_008321.1 KEGG: son:SO4612 hypothetical protein; hypothetical protein 4534999 4254360 Shewmr4_3797 Shewanella sp. MR-4 hypothetical protein YP_735917.1 4534454 D 60480 CDS YP_735918.1 113972125 4254361 4534999..4536057 1 NC_008321.1 PFAM: cytochrome oxidase assembly; KEGG: son:SO4613 cytochrome oxidase assembly protein, putative; cytochrome oxidase assembly 4536057 4254361 Shewmr4_3798 Shewanella sp. MR-4 cytochrome oxidase assembly YP_735918.1 4534999 D 60480 CDS YP_735919.1 113972126 4254362 4536075..4536977 1 NC_008321.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 4536977 4254362 Shewmr4_3799 Shewanella sp. MR-4 protoheme IX farnesyltransferase YP_735919.1 4536075 D 60480 CDS YP_735920.1 113972127 4254363 4537002..4537661 1 NC_008321.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: son:SO4615 SCO1/SenC family protein; electron transport protein SCO1/SenC 4537661 4254363 Shewmr4_3800 Shewanella sp. MR-4 electron transport protein SCO1/SenC YP_735920.1 4537002 D 60480 CDS YP_735921.1 113972128 4254364 complement(4537676..4538722) 1 NC_008321.1 PFAM: polysaccharide deacetylase; KEGG: son:SO4616 polysaccharide deacetylase family protein; polysaccharide deacetylase 4538722 4254364 Shewmr4_3801 Shewanella sp. MR-4 polysaccharide deacetylase YP_735921.1 4537676 R 60480 CDS YP_735922.1 113972129 4254365 4538745..4540112 1 NC_008321.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO4617 DNA-damage-inducible protein F; MATE efflux family protein 4540112 4254365 Shewmr4_3802 Shewanella sp. MR-4 MATE efflux family protein YP_735922.1 4538745 D 60480 CDS YP_735923.1 113972130 4254366 4540190..4542127 1 NC_008321.1 PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; phospholipase/Carboxylesterase; KEGG: son:SO4618 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase 4542127 4254366 Shewmr4_3803 Shewanella sp. MR-4 peptidase S9 prolyl oligopeptidase YP_735923.1 4540190 D 60480 CDS YP_735924.1 113972131 4254367 complement(4542191..4542769) 1 NC_008321.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 4542769 4254367 Shewmr4_3804 Shewanella sp. MR-4 putative DNA uptake protein YP_735924.1 4542191 R 60480 CDS YP_735925.1 113972132 4254368 complement(4542937..4543743) 1 NC_008321.1 KEGG: son:SO4625 competence protein ComF; competence protein ComF 4543743 4254368 Shewmr4_3805 Shewanella sp. MR-4 competence protein ComF YP_735925.1 4542937 R 60480 CDS YP_735926.1 113972133 4254369 4543769..4544563 1 NC_008321.1 TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: son:SO4626 bioH protein; bioH protein 4544563 4254369 Shewmr4_3806 Shewanella sp. MR-4 bioH protein YP_735926.1 4543769 D 60480 CDS YP_735927.1 113972134 4254370 4544625..4545179 1 NC_008321.1 KEGG: son:SO4627 hypothetical protein; hypothetical protein 4545179 4254370 Shewmr4_3807 Shewanella sp. MR-4 hypothetical protein YP_735927.1 4544625 D 60480 CDS YP_735928.1 113972135 4254371 complement(4545246..4547210) 1 NC_008321.1 PFAM: sulfatase; KEGG: son:SO4628 sulfatase; sulfatase 4547210 4254371 Shewmr4_3808 Shewanella sp. MR-4 sulfatase YP_735928.1 4545246 R 60480 CDS YP_735929.1 113972136 4254372 complement(4547428..4549767) 1 NC_008321.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: son:SO4629 hypothetical protein; RNA-binding S1 domain-containing protein 4549767 4254372 Shewmr4_3809 Shewanella sp. MR-4 RNA-binding S1 domain-containing protein YP_735929.1 4547428 R 60480 CDS YP_735930.1 113972137 4254373 complement(4549897..4550400) 1 NC_008321.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO4631 transcription elongation factor GreB; transcription elongation factor GreB 4550400 4254373 Shewmr4_3810 Shewanella sp. MR-4 transcription elongation factor GreB YP_735930.1 4549897 R 60480 CDS YP_735931.1 113972138 4254374 4550774..4551499 1 NC_008321.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 4551499 ompR 4254374 ompR Shewanella sp. MR-4 osmolarity response regulator YP_735931.1 4550774 D 60480 CDS YP_735932.1 113972139 4254375 4551539..4552855 1 NC_008321.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 4552855 envZ 4254375 envZ Shewanella sp. MR-4 osmolarity sensor protein YP_735932.1 4551539 D 60480 CDS YP_735933.1 113972140 4254376 4552972..4554948 1 NC_008321.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4635 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4554948 4254376 Shewmr4_3813 Shewanella sp. MR-4 methyl-accepting chemotaxis sensory transducer YP_735933.1 4552972 D 60480 CDS YP_735934.1 113972141 4254377 complement(4555006..4555479) 1 NC_008321.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO4640 antioxidant, AhpC/Tsa family; redoxin domain-containing protein 4555479 4254377 Shewmr4_3814 Shewanella sp. MR-4 redoxin domain-containing protein YP_735934.1 4555006 R 60480 CDS YP_735935.1 113972142 4254378 complement(4555740..4556672) 1 NC_008321.1 KEGG: son:SO4645 hypothetical protein; hypothetical protein 4556672 4254378 Shewmr4_3815 Shewanella sp. MR-4 hypothetical protein YP_735935.1 4555740 R 60480 CDS YP_735936.1 113972143 4254379 4557031..4557333 1 NC_008321.1 PFAM: Propeptide, PepSY amd peptidase M4; KEGG: son:SO4646 hypothetical protein; peptidase 4557333 4254379 Shewmr4_3816 Shewanella sp. MR-4 peptidase YP_735936.1 4557031 D 60480 CDS YP_735937.1 113972144 4254380 4557335..4558018 1 NC_008321.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4647 DNA-binding response regulator; two component transcriptional regulator 4558018 4254380 Shewmr4_3817 Shewanella sp. MR-4 two component transcriptional regulator YP_735937.1 4557335 D 60480 CDS YP_735938.1 113972145 4254381 4558011..4559375 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4648 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 4559375 4254381 Shewmr4_3818 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_735938.1 4558011 D 60480 CDS YP_735939.1 113972146 4254382 4559791..4561296 1 NC_008321.1 KEGG: son:SO4649 hypothetical protein; hypothetical protein 4561296 4254382 Shewmr4_3819 Shewanella sp. MR-4 hypothetical protein YP_735939.1 4559791 D 60480 CDS YP_735940.1 113972147 4254383 complement(4561352..4561828) 1 NC_008321.1 KEGG: son:SO4656 hypothetical protein; hypothetical protein 4561828 4254383 Shewmr4_3820 Shewanella sp. MR-4 hypothetical protein YP_735940.1 4561352 R 60480 CDS YP_735941.1 113972148 4254384 complement(4561904..4565533) 1 NC_008321.1 KEGG: son:SO4656.2 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) 4565533 4254384 Shewmr4_3821 Shewanella sp. MR-4 diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) YP_735941.1 4561904 R 60480 CDS YP_735942.1 113972149 4254385 4566166..4566486 1 NC_008321.1 hypothetical protein 4566486 4254385 Shewmr4_3822 Shewanella sp. MR-4 hypothetical protein YP_735942.1 4566166 D 60480 CDS YP_735943.1 113972150 4254386 4566675..4567703 1 NC_008321.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; KEGG: pha:PSHAa2231 ubiquinol oxidase polypeptide II (cytochrome o subunit 2) (oxidase BO(3) subunit 2) (cytochrome o ubiquinol oxidase subunit 2) (ubiquinol oxidase chain B); ubiquinol oxidase subunit II 4567703 4254386 Shewmr4_3823 Shewanella sp. MR-4 ubiquinol oxidase subunit II YP_735943.1 4566675 D 60480 CDS YP_735944.1 113972151 4254387 4567706..4569685 1 NC_008321.1 PFAM: cytochrome c oxidase, subunit I; KEGG: pha:PSHAa2230 ubiquinol oxidase polypeptide I (cytochrome o subunit 1) (oxidase BO(3) subunit 1) (cytochrome o ubiquinol oxidase subunit 1) (ubiquinol oxidase chain A); cytochrome-c oxidase 4569685 4254387 Shewmr4_3824 Shewanella sp. MR-4 cytochrome-c oxidase YP_735944.1 4567706 D 60480 CDS YP_735945.1 113972152 4254388 4569687..4570307 1 NC_008321.1 PFAM: cytochrome c oxidase, subunit III; KEGG: pha:PSHAa2229 cytochrome o ubiquinol oxidase subunit III (ubiquinol oxidase chain C); cytochrome c oxidase subunit III 4570307 4254388 Shewmr4_3825 Shewanella sp. MR-4 cytochrome c oxidase subunit III YP_735945.1 4569687 D 60480 CDS YP_735946.1 113972153 4254389 4570307..4570648 1 NC_008321.1 PFAM: cytochrome C oxidase subunit IV; KEGG: pha:PSHAa2228 cytochrome o ubiquinol oxidase protein (ubiquinol oxidase chain D); cytochrome C oxidase subunit IV 4570648 4254389 Shewmr4_3826 Shewanella sp. MR-4 cytochrome C oxidase subunit IV YP_735946.1 4570307 D 60480 CDS YP_735947.1 113972154 4254390 4570662..4571594 1 NC_008321.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 4571594 4254390 Shewmr4_3827 Shewanella sp. MR-4 protoheme IX farnesyltransferase YP_735947.1 4570662 D 60480 CDS YP_735948.1 113972155 4254391 complement(4571704..4572489) 1 NC_008321.1 PFAM: protein of unknown function DUF548; KEGG: sdn:Sden_3610 protein of unknown function DUF548; hypothetical protein 4572489 4254391 Shewmr4_3828 Shewanella sp. MR-4 hypothetical protein YP_735948.1 4571704 R 60480 CDS YP_735949.1 113972156 4254392 4572641..4573486 1 NC_008321.1 PFAM: protein of unknown function DUF519; KEGG: son:SO4659 hypothetical protein; hypothetical protein 4573486 4254392 Shewmr4_3829 Shewanella sp. MR-4 hypothetical protein YP_735949.1 4572641 D 60480 CDS YP_735950.1 113972157 4254393 complement(4573586..4574305) 1 NC_008321.1 PFAM: Lytic transglycosylase, catalytic; KEGG: son:SO4660 transglycosylase SLT domain protein; lytic transglycosylase, catalytic 4574305 4254393 Shewmr4_3830 Shewanella sp. MR-4 lytic transglycosylase, catalytic YP_735950.1 4573586 R 60480 CDS YP_735951.1 113972158 4254394 complement(4574305..4575333) 1 NC_008321.1 KEGG: son:SO4661 hypothetical protein; hypothetical protein 4575333 4254394 Shewmr4_3831 Shewanella sp. MR-4 hypothetical protein YP_735951.1 4574305 R 60480 CDS YP_735952.1 113972159 4254395 complement(4575384..4575950) 1 NC_008321.1 PFAM: LemA family protein; KEGG: son:SO4662 lemA protein; LemA family protein 4575950 4254395 Shewmr4_3832 Shewanella sp. MR-4 LemA family protein YP_735952.1 4575384 R 60480 CDS YP_735953.1 113972160 4254396 4576417..4578024 1 NC_008321.1 PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; short chain fatty acid transporter; KEGG: ppr:PBPRA0142 putative efflux pump component MtrF; transporter AbgT 4578024 4254396 Shewmr4_3833 Shewanella sp. MR-4 transporter AbgT YP_735953.1 4576417 D 60480 CDS YP_735954.1 113972161 4254397 complement(4578117..4578416) 1 NC_008321.1 hypothetical protein 4578416 4254397 Shewmr4_3834 Shewanella sp. MR-4 hypothetical protein YP_735954.1 4578117 R 60480 CDS YP_735955.1 113972162 4254398 complement(4578465..4578761) 1 NC_008321.1 hypothetical protein 4578761 4254398 Shewmr4_3835 Shewanella sp. MR-4 hypothetical protein YP_735955.1 4578465 R 60480 CDS YP_735956.1 113972163 4254399 complement(4578873..4582007) 1 NC_008321.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO4692 AcrB/AcrD/AcrF family protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 4582007 4254399 Shewmr4_3836 Shewanella sp. MR-4 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_735956.1 4578873 R 60480 CDS YP_735957.1 113972164 4254400 complement(4582017..4583165) 1 NC_008321.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO4693 multidrug resistance protein, AcrA/AcrE family; RND family efflux transporter MFP subunit 4583165 4254400 Shewmr4_3837 Shewanella sp. MR-4 RND family efflux transporter MFP subunit YP_735957.1 4582017 R 60480 CDS YP_735958.1 113972165 4254401 4583987..4584733 1 NC_008321.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO4694 hypothetical protein; hypothetical protein 4584733 4254401 Shewmr4_3838 Shewanella sp. MR-4 hypothetical protein YP_735958.1 4583987 D 60480 CDS YP_735959.1 113972166 4254402 complement(4584836..4585525) 1 NC_008321.1 KEGG: son:SO4696 hypothetical 3-methyladenine DNA glycosylase; 3-methyladenine DNA glycosylase 4585525 4254402 Shewmr4_3839 Shewanella sp. MR-4 3-methyladenine DNA glycosylase YP_735959.1 4584836 R 60480 CDS YP_735960.1 113972167 4254403 4585733..4586380 1 NC_008321.1 PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO4697 glutathione S-transferase; glutathione S-transferase domain-containing protein 4586380 4254403 Shewmr4_3840 Shewanella sp. MR-4 glutathione S-transferase domain-containing protein YP_735960.1 4585733 D 60480 CDS YP_735961.1 113972168 4254404 complement(4586391..4586921) 1 NC_008321.1 KEGG: son:SO4698 hypothetical protein; hypothetical protein 4586921 4254404 Shewmr4_3841 Shewanella sp. MR-4 hypothetical protein YP_735961.1 4586391 R 60480 CDS YP_735962.1 113972169 4254405 complement(4587051..4589090) 1 NC_008321.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO4699 oligopeptidase A; oligopeptidase A 4589090 4254405 Shewmr4_3842 Shewanella sp. MR-4 oligopeptidase A YP_735962.1 4587051 R 60480 CDS YP_735963.1 113972170 4254406 4589300..4590136 1 NC_008321.1 KEGG: son:SO4700 hypothetical protein; hypothetical protein 4590136 4254406 Shewmr4_3843 Shewanella sp. MR-4 hypothetical protein YP_735963.1 4589300 D 60480 CDS YP_735964.1 113972171 4254407 4590238..4590768 1 NC_008321.1 KEGG: son:SO4701 hypothetical protein; hypothetical protein 4590768 4254407 Shewmr4_3844 Shewanella sp. MR-4 hypothetical protein YP_735964.1 4590238 D 60480 CDS YP_735965.1 113972172 4254408 4590936..4592291 1 NC_008321.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 4592291 4254408 Shewmr4_3845 Shewanella sp. MR-4 glutathione reductase YP_735965.1 4590936 D 60480 CDS YP_735966.1 113972173 4254409 4592657..4593478 1 NC_008321.1 KEGG: vfi:VFA0898 hypothetical protein; hypothetical protein 4593478 4254409 Shewmr4_3846 Shewanella sp. MR-4 hypothetical protein YP_735966.1 4592657 D 60480 CDS YP_735967.1 113972174 4254410 4593935..4595431 1 NC_008321.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: sdn:Sden_0149 sodium/proline symporter; sodium/proline symporter 4595431 4254410 Shewmr4_3847 Shewanella sp. MR-4 sodium/proline symporter YP_735967.1 4593935 D 60480 CDS YP_735968.1 113972175 4254411 4595441..4596547 1 NC_008321.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 4596547 4254411 Shewmr4_3848 Shewanella sp. MR-4 gamma-glutamyl kinase YP_735968.1 4595441 D 60480 CDS YP_735969.1 113972176 4254412 4596559..4597806 1 NC_008321.1 TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: sdn:Sden_0151 gamma-glutamyl phosphate reductase; glutamate-5-semialdehyde dehydrogenase 4597806 4254412 Shewmr4_3849 Shewanella sp. MR-4 glutamate-5-semialdehyde dehydrogenase YP_735969.1 4596559 D 60480 CDS YP_735970.1 113972177 4254413 complement(4597925..4598374) 1 NC_008321.1 KEGG: cps:CPS_0896 hypothetical protein; hypothetical protein 4598374 4254413 Shewmr4_3850 Shewanella sp. MR-4 hypothetical protein YP_735970.1 4597925 R 60480 CDS YP_735971.1 113972178 4254414 complement(4598676..4600208) 1 NC_008321.1 PFAM: helix-turn-helix domain protein; KEGG: son:SO4705 transcriptional regulator, putative; XRE family transcriptional regulator 4600208 4254414 Shewmr4_3851 Shewanella sp. MR-4 XRE family transcriptional regulator YP_735971.1 4598676 R 60480 CDS YP_735972.1 113972179 4254415 4600418..4600981 1 NC_008321.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4600981 4254415 Shewmr4_3852 Shewanella sp. MR-4 malate synthase YP_735972.1 4600418 D 60480 CDS YP_735973.1 113972180 4254416 4601247..4602197 1 NC_008321.1 PFAM: conserved hypothetical protein 698; KEGG: son:SO4708 hypothetical protein; hypothetical protein 4602197 4254416 Shewmr4_3853 Shewanella sp. MR-4 hypothetical protein YP_735973.1 4601247 D 60480 CDS YP_735974.1 113972181 4254417 complement(4602247..4602399) 1 NC_008321.1 KEGG: son:SO4709 hypothetical protein; hypothetical protein 4602399 4254417 Shewmr4_3854 Shewanella sp. MR-4 hypothetical protein YP_735974.1 4602247 R 60480 CDS YP_735975.1 113972182 4254418 complement(4602506..4603051) 1 NC_008321.1 PFAM: regulatory protein, LuxR; KEGG: cps:CPS_1945 hypothetical protein; LuxR family transcriptional regulator 4603051 4254418 Shewmr4_3855 Shewanella sp. MR-4 LuxR family transcriptional regulator YP_735975.1 4602506 R 60480 CDS YP_735976.1 113972183 4254419 4603196..4604398 1 NC_008321.1 KEGG: ilo:IL0061 outer membrane protein; hypothetical protein 4604398 4254419 Shewmr4_3856 Shewanella sp. MR-4 hypothetical protein YP_735976.1 4603196 D 60480 CDS YP_735977.1 113972184 4254420 4604395..4605423 1 NC_008321.1 KEGG: cps:CPS_1944 hypothetical protein; hypothetical protein 4605423 4254420 Shewmr4_3857 Shewanella sp. MR-4 hypothetical protein YP_735977.1 4604395 D 60480 CDS YP_735978.1 113972185 4254421 4605425..4608478 1 NC_008321.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cps:CPS_1943 cation efflux system protein CzcA; CzcA family heavy metal efflux protein 4608478 4254421 Shewmr4_3858 Shewanella sp. MR-4 CzcA family heavy metal efflux protein YP_735978.1 4605425 D 60480 CDS YP_735979.1 113972186 4254422 4608475..4608780 1 NC_008321.1 KEGG: cps:CPS_1942 hypothetical protein; hypothetical protein 4608780 4254422 Shewmr4_3859 Shewanella sp. MR-4 hypothetical protein YP_735979.1 4608475 D 60480 CDS YP_735980.1 113972187 4254423 complement(4608823..4609458) 1 NC_008321.1 PFAM: Paraquat-inducible protein A; KEGG: son:SO4710 hypothetical protein; paraquat-inducible protein A 4609458 4254423 Shewmr4_3860 Shewanella sp. MR-4 paraquat-inducible protein A YP_735980.1 4608823 R 60480 CDS YP_735981.1 113972188 4254424 complement(4609563..4610798) 1 NC_008321.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO4711 HD domain protein; metal dependent phosphohydrolase 4610798 4254424 Shewmr4_3861 Shewanella sp. MR-4 metal dependent phosphohydrolase YP_735981.1 4609563 R 60480 CDS YP_735982.1 113972189 4254425 complement(4610975..4611214) 1 NC_008321.1 hypothetical protein 4611214 4254425 Shewmr4_3862 Shewanella sp. MR-4 hypothetical protein YP_735982.1 4610975 R 60480 CDS YP_735983.1 113972190 4254426 complement(4611222..4611959) 1 NC_008321.1 KEGG: pca:Pcar_2393 hypothetical protein; hypothetical protein 4611959 4254426 Shewmr4_3863 Shewanella sp. MR-4 hypothetical protein YP_735983.1 4611222 R 60480 CDS YP_735984.1 113972191 4254427 complement(4611975..4612517) 1 NC_008321.1 KEGG: pca:Pcar_2394 hypothetical protein; hypothetical protein 4612517 4254427 Shewmr4_3864 Shewanella sp. MR-4 hypothetical protein YP_735984.1 4611975 R 60480 CDS YP_735985.1 113972192 4254428 complement(4612514..4613197) 1 NC_008321.1 PFAM: cobalt transport protein; KEGG: pca:Pcar_2395 hypothetical protein; cobalt transport protein 4613197 4254428 Shewmr4_3865 Shewanella sp. MR-4 cobalt transport protein YP_735985.1 4612514 R 60480 CDS YP_735986.1 113972193 4254429 complement(4613187..4614554) 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4712 ABC transporter, ATP-binding protein, putative; ABC transporter-like protein 4614554 4254429 Shewmr4_3866 Shewanella sp. MR-4 ABC transporter-like protein YP_735986.1 4613187 R 60480 CDS YP_735987.1 113972194 4254430 complement(4614556..4616745) 1 NC_008321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nha:Nham_3500 TonB-dependent receptor; TonB-dependent receptor, plug 4616745 4254430 Shewmr4_3867 Shewanella sp. MR-4 TonB-dependent receptor, plug YP_735987.1 4614556 R 60480 CDS YP_735988.1 113972195 4254431 4617154..4618512 1 NC_008321.1 TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: son:SO4713 menaquinone-specific isochorismate synthase, putative; isochorismate synthases 4618512 4254431 Shewmr4_3868 Shewanella sp. MR-4 isochorismate synthases YP_735988.1 4617154 D 60480 CDS YP_735989.1 113972196 4254432 complement(4618525..4619250) 1 NC_008321.1 KEGG: son:SO4714 hypothetical protein; hypothetical protein 4619250 4254432 Shewmr4_3869 Shewanella sp. MR-4 hypothetical protein YP_735989.1 4618525 R 60480 CDS YP_735990.1 113972197 4254433 4619498..4620151 1 NC_008321.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: son:SO4715 hypothetical protein; hypothetical protein 4620151 4254433 Shewmr4_3870 Shewanella sp. MR-4 hypothetical protein YP_735990.1 4619498 D 60480 CDS YP_735991.1 113972198 4254434 4620251..4620718 1 NC_008321.1 KEGG: son:SO4716 acetyltransferase, GNAT family; acetyltransferase 4620718 4254434 Shewmr4_3871 Shewanella sp. MR-4 acetyltransferase YP_735991.1 4620251 D 60480 CDS YP_735992.1 113972199 4254435 complement(4620984..4623113) 1 NC_008321.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4717 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 4623113 4254435 Shewmr4_3872 Shewanella sp. MR-4 periplasmic sensor signal transduction histidine kinase YP_735992.1 4620984 R 60480 CDS YP_735993.1 113972200 4254436 complement(4623114..4624544) 1 NC_008321.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO4718 sigma-54 dependent response regulator; two component, sigma54 specific, Fis family transcriptional regulator 4624544 4254436 Shewmr4_3873 Shewanella sp. MR-4 two component, sigma54 specific, Fis family transcriptional regulator YP_735993.1 4623114 R 60480 CDS YP_735994.1 113972201 4254437 4624781..4625605 1 NC_008321.1 PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO4719 putative sulfate transport system substrate-binding protein; extracellular solute-binding protein 4625605 4254437 Shewmr4_3874 Shewanella sp. MR-4 extracellular solute-binding protein YP_735994.1 4624781 D 60480 CDS YP_735995.1 113972202 4254438 4625602..4626309 1 NC_008321.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4720 ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 4626309 4254438 Shewmr4_3875 Shewanella sp. MR-4 binding-protein-dependent transport systems inner membrane component YP_735995.1 4625602 D 60480 CDS YP_735996.1 113972203 4254439 4626313..4627020 1 NC_008321.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4721 ABC transporter, ATP-binding protein; ABC transporter-like protein 4627020 4254439 Shewmr4_3876 Shewanella sp. MR-4 ABC transporter-like protein YP_735996.1 4626313 D 60480 CDS YP_735997.1 113972204 4254440 4627004..4627597 1 NC_008321.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: son:SO4722 molybdopterin-guanine dinucleotide biosynthesis protein; molybdenum cofactor guanylyltransferase 4627597 4254440 Shewmr4_3877 Shewanella sp. MR-4 molybdenum cofactor guanylyltransferase YP_735997.1 4627004 D 60480 CDS YP_735998.1 113972205 4254441 4627628..4629427 1 NC_008321.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin binding domain; molybdopterin-guanine dinucleotide biosynthesis MobB region; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: son:SO4723 molybdopterin biosynthesis MoeA protein, putative; putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA 4629427 4254441 Shewmr4_3878 Shewanella sp. MR-4 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA YP_735998.1 4627628 D 60480 CDS YP_735999.1 113972206 4254442 4629444..4630427 1 NC_008321.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 4630427 4254442 Shewmr4_3879 Shewanella sp. MR-4 molybdenum cofactor biosynthesis protein A YP_735999.1 4629444 D 60480 CDS YP_736000.1 113972207 4254443 4630509..4630964 1 NC_008321.1 KEGG: son:SO4725 hypothetical protein; hypothetical protein 4630964 4254443 Shewmr4_3880 Shewanella sp. MR-4 hypothetical protein YP_736000.1 4630509 D 60480 CDS YP_736001.1 113972208 4254444 4630989..4631804 1 NC_008321.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 4631804 4254444 Shewmr4_3881 Shewanella sp. MR-4 formamidopyrimidine-DNA glycosylase YP_736001.1 4630989 D 60480 CDS YP_736002.1 113972209 4254445 complement(4631866..4633590) 1 NC_008321.1 PFAM: glycosyl transferase, family 39; KEGG: son:SO4690 hypothetical protein; glycosyl transferase family protein 4633590 4254445 Shewmr4_3882 Shewanella sp. MR-4 glycosyl transferase family protein YP_736002.1 4631866 R 60480 CDS YP_736003.1 113972210 4254446 complement(4633604..4634263) 1 NC_008321.1 KEGG: son:SO4689 hypothetical protein; hypothetical protein 4634263 4254446 Shewmr4_3883 Shewanella sp. MR-4 hypothetical protein YP_736003.1 4633604 R 60480 CDS YP_736004.1 113972211 4254447 complement(4634265..4634996) 1 NC_008321.1 PFAM: glycosyl transferase, family 2; KEGG: son:SO4688 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 4634996 4254447 Shewmr4_3884 Shewanella sp. MR-4 glycosyl transferase family protein YP_736004.1 4634265 R 60480 CDS YP_736005.1 113972212 4254448 4635164..4636393 1 NC_008321.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: son:SO4687 UDP-glucose 6-dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase 4636393 4254448 Shewmr4_3885 Shewanella sp. MR-4 UDP-glucose/GDP-mannose dehydrogenase YP_736005.1 4635164 D 60480 CDS YP_736006.1 113972213 4254449 4636418..4637425 1 NC_008321.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO4686 NAD dependent epimerase/dehydratase family protein; UDP-glucuronate 5'-epimerase 4637425 4254449 Shewmr4_3886 Shewanella sp. MR-4 UDP-glucuronate 5'-epimerase YP_736006.1 4636418 D 60480 CDS YP_736007.1 113972214 4254450 complement(4637484..4638956) 1 NC_008321.1 KEGG: son:SO4685 hypothetical protein; hypothetical protein 4638956 4254450 Shewmr4_3887 Shewanella sp. MR-4 hypothetical protein YP_736007.1 4637484 R 60480 CDS YP_736008.1 113972215 4254451 complement(4639022..4639513) 1 NC_008321.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 4639513 coaD 4254451 coaD Shewanella sp. MR-4 phosphopantetheine adenylyltransferase YP_736008.1 4639022 R 60480 CDS YP_736009.1 113972216 4254452 4639788..4640858 1 NC_008321.1 PFAM: glycosyl transferase, group 1; KEGG: son:SO4682 glycosyl transferase, group 1 family protein; glycosyl transferase, group 1 4640858 4254452 Shewmr4_3889 Shewanella sp. MR-4 glycosyl transferase, group 1 YP_736009.1 4639788 D 60480 CDS YP_736010.1 113972217 4254453 4640869..4641270 1 NC_008321.1 TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; capsule biosynthesis phosphatase; KEGG: vch:VC0232 hypothetical protein; capsule biosynthesis phosphatase 4641270 4254453 Shewmr4_3890 Shewanella sp. MR-4 capsule biosynthesis phosphatase YP_736010.1 4640869 D 60480 CDS YP_736011.1 113972218 4254454 4641261..4642826 1 NC_008321.1 KEGG: vch:VC0231 hypothetical protein; hypothetical protein 4642826 4254454 Shewmr4_3891 Shewanella sp. MR-4 hypothetical protein YP_736011.1 4641261 D 60480 CDS YP_736012.1 113972219 4254455 4642823..4643551 1 NC_008321.1 KEGG: vch:VC0230 hypothetical protein; hypothetical protein 4643551 4254455 Shewmr4_3892 Shewanella sp. MR-4 hypothetical protein YP_736012.1 4642823 D 60480 CDS YP_736013.1 113972220 4254456 complement(4643596..4644486) 1 NC_008321.1 KEGG: vch:VC0228 hypothetical protein; hypothetical protein 4644486 4254456 Shewmr4_3893 Shewanella sp. MR-4 hypothetical protein YP_736013.1 4643596 R 60480 CDS YP_736014.1 113972221 4254457 complement(4644532..4645605) 1 NC_008321.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: son:SO4680 hypothetical protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 4645605 4254457 Shewmr4_3894 Shewanella sp. MR-4 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_736014.1 4644532 R 60480 CDS YP_736015.1 113972222 4254458 complement(4645625..4646710) 1 NC_008321.1 PFAM: glycosyl transferase, group 1; KEGG: son:SO4679 glycosyl transferase, group 1 family protein; glycosyl transferase, group 1 4646710 4254458 Shewmr4_3895 Shewanella sp. MR-4 glycosyl transferase, group 1 YP_736015.1 4645625 R 60480 CDS YP_736016.1 113972223 4254459 complement(4646763..4647785) 1 NC_008321.1 PFAM: glycosyl transferase, family 9; KEGG: son:SO4678 heptosyl transferase, glycosyltransferase family 9 protein; glycosyl transferase family protein 4647785 4254459 Shewmr4_3896 Shewanella sp. MR-4 glycosyl transferase family protein YP_736016.1 4646763 R 60480 CDS YP_736017.1 113972224 4254460 4647895..4648647 1 NC_008321.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 4648647 4254460 Shewmr4_3897 Shewanella sp. MR-4 3-deoxy-D-manno-octulosonic-acid kinase YP_736017.1 4647895 D 60480 CDS YP_736018.1 113972225 4254461 complement(4648662..4649987) 1 NC_008321.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: son:SO4676 3-deoxy-D-manno-octulosonic-acid (KDO) transferase; 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 4649987 4254461 Shewmr4_3898 Shewanella sp. MR-4 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein YP_736018.1 4648662 R 60480 CDS YP_736019.1 113972226 4254462 4650182..4650829 1 NC_008321.1 PFAM: regulatory protein, TetR; KEGG: son:SO4675 transcriptional regulator, TetR family; TetR family transcriptional regulator 4650829 4254462 Shewmr4_3899 Shewanella sp. MR-4 TetR family transcriptional regulator YP_736019.1 4650182 D 60480 CDS YP_736020.1 113972227 4254463 4651100..4652293 1 NC_008321.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 4652293 4254463 Shewmr4_3900 Shewanella sp. MR-4 2-amino-3-ketobutyrate coenzyme A ligase YP_736020.1 4651100 D 60480 CDS YP_736021.1 113972228 4254464 4652305..4653330 1 NC_008321.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 4653330 tdh 4254464 tdh Shewanella sp. MR-4 L-threonine 3-dehydrogenase YP_736021.1 4652305 D 60480 CDS YP_736022.1 113972229 4254465 4653429..4653734 1 NC_008321.1 PFAM: Rhodanese domain protein; KEGG: son:SO4672 glpE protein; rhodanese domain-containing protein 4653734 4254465 Shewmr4_3902 Shewanella sp. MR-4 rhodanese domain-containing protein YP_736022.1 4653429 D 60480 CDS YP_736023.1 113972230 4254466 4653731..4654573 1 NC_008321.1 PFAM: Rhomboid family protein; KEGG: son:SO4671 glpG protein; rhomboid family protein 4654573 4254466 Shewmr4_3903 Shewanella sp. MR-4 rhomboid family protein YP_736023.1 4653731 D 60480 CDS YP_736024.1 113972231 4254467 complement(4654650..4655306) 1 NC_008321.1 PFAM: ThiJ/PfpI domain protein; KEGG: son:SO4670 enhancing lycopene biosynthesis protein; isoprenoid biosynthesis protein with amidotransferase-like domain 4655306 4254467 Shewmr4_3904 Shewanella sp. MR-4 isoprenoid biosynthesis protein with amidotransferase-like domain YP_736024.1 4654650 R 60480 CDS YP_736025.1 113972232 4254468 4655692..4658460 1 NC_008321.1 KEGG: son:SO4669 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I 4658460 4254468 Shewmr4_3905 Shewanella sp. MR-4 DNA polymerase I YP_736025.1 4655692 D 60480 CDS YP_736026.1 113972233 4254469 complement(4659439..4660098) 1 NC_008321.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 4660098 engB 4254469 engB Shewanella sp. MR-4 ribosome biogenesis GTP-binding protein YsxC YP_736026.1 4659439 R 60480 CDS YP_736027.1 113972234 4254470 4660268..4660891 1 NC_008321.1 PFAM: cytochrome c, class I; KEGG: son:SO4666 cytochrome c; cytochrome c, class I 4660891 4254470 Shewmr4_3907 Shewanella sp. MR-4 cytochrome c, class I YP_736027.1 4660268 D 60480 CDS YP_736028.1 113972235 4254471 4661715..4662353 1 NC_008321.1 KEGG: son:SO4727 hypothetical protein; hypothetical protein 4662353 4254471 Shewmr4_3908 Shewanella sp. MR-4 hypothetical protein YP_736028.1 4661715 D 60480 CDS YP_736029.1 113972236 4254472 4662436..4662990 1 NC_008321.1 PFAM: protein of unknown function DUF414; KEGG: son:SO4728 hypothetical protein; hypothetical protein 4662990 4254472 Shewmr4_3909 Shewanella sp. MR-4 hypothetical protein YP_736029.1 4662436 D 60480 CDS YP_736030.1 113972237 4254473 4663059..4663526 1 NC_008321.1 KEGG: son:SO4729 hypothetical protein; hypothetical protein 4663526 4254473 Shewmr4_3910 Shewanella sp. MR-4 hypothetical protein YP_736030.1 4663059 D 60480 CDS YP_736031.1 113972238 4254474 4663820..4665160 1 NC_008321.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4665160 4254474 Shewmr4_3911 Shewanella sp. MR-4 coproporphyrinogen III oxidase YP_736031.1 4663820 D 60480 CDS YP_736032.1 113972239 4254475 complement(4665232..4666227) 1 NC_008321.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 4666227 4254475 Shewmr4_3912 Shewanella sp. MR-4 adenosine deaminase YP_736032.1 4665232 R 60480 CDS YP_736033.1 113972240 4254476 4666439..4668244 1 NC_008321.1 PFAM: protein of unknown function DUF885; KEGG: son:SO4732 hypothetical protein; hypothetical protein 4668244 4254476 Shewmr4_3913 Shewanella sp. MR-4 hypothetical protein YP_736033.1 4666439 D 60480 CDS YP_736034.1 113972241 4254477 4668347..4669360 1 NC_008321.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO4733 lysophospholipase L2; alpha/beta hydrolase fold domain-containing protein 4669360 4254477 Shewmr4_3914 Shewanella sp. MR-4 alpha/beta hydrolase fold domain-containing protein YP_736034.1 4668347 D 60480 CDS YP_736035.1 113972242 4254478 complement(4669317..4671767) 1 NC_008321.1 KEGG: son:SO4734 sensory box protein; TIGRFAM: PAS sensor protein; PFAM: EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate phosphodiesterase 4671767 4254478 Shewmr4_3915 Shewanella sp. MR-4 diguanylate phosphodiesterase YP_736035.1 4669317 R 60480 CDS YP_736036.1 113972243 4254479 complement(4677703..4679130) 1 NC_008321.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4737 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 4679130 4254479 Shewmr4_3916 Shewanella sp. MR-4 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_736036.1 4677703 R 60480 CDS YP_736037.1 113972244 4254480 4679222..4679572 1 NC_008321.1 KEGG: son:SO4738 hypothetical protein; hypothetical protein 4679572 4254480 Shewmr4_3917 Shewanella sp. MR-4 hypothetical protein YP_736037.1 4679222 D 60480 CDS YP_736038.1 113972245 4254481 4679689..4680591 1 NC_008321.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 4680591 4254481 Shewmr4_3918 Shewanella sp. MR-4 naphthoate synthase YP_736038.1 4679689 D 60480 CDS YP_736039.1 113972246 4254482 4680756..4680959 1 NC_008321.1 KEGG: son:SO4740 hypothetical protein; hypothetical protein 4680959 4254482 Shewmr4_3919 Shewanella sp. MR-4 hypothetical protein YP_736039.1 4680756 D 60480 CDS YP_736040.1 113972247 4254483 complement(4681040..4682869) 1 NC_008321.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 4682869 4254483 Shewmr4_3920 Shewanella sp. MR-4 glucosamine--fructose-6-phosphate aminotransferase YP_736040.1 4681040 R 60480 CDS YP_736041.1 113972248 4254484 complement(4682945..4683727) 1 NC_008321.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: son:SO4742 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 4683727 4254484 Shewmr4_3921 Shewanella sp. MR-4 DeoR family transcriptional regulator YP_736041.1 4682945 R 60480 CDS YP_736042.1 113972249 4254485 complement(4683917..4686046) 1 NC_008321.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4743 TonB-dependent receptor, putative; TonB-dependent siderophore receptor 4686046 4254485 Shewmr4_3922 Shewanella sp. MR-4 TonB-dependent siderophore receptor YP_736042.1 4683917 R 60480 CDS YP_736043.1 113972250 4254486 complement(4686308..4687672) 1 NC_008321.1 KEGG: son:SO4745 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase 4687672 4254486 Shewmr4_3923 Shewanella sp. MR-4 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase YP_736043.1 4686308 R 60480 CDS YP_736044.1 113972251 4254487 complement(4687843..4688271) 1 NC_008321.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 4688271 atpC 4254487 atpC Shewanella sp. MR-4 F0F1 ATP synthase subunit epsilon YP_736044.1 4687843 R 60480 CDS YP_736045.1 113972252 4254488 complement(4688308..4689699) 1 NC_008321.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 4689699 4254488 Shewmr4_3925 Shewanella sp. MR-4 F0F1 ATP synthase subunit beta YP_736045.1 4688308 R 60480 CDS YP_736046.1 113972253 4254489 complement(4689735..4690595) 1 NC_008321.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 4690595 4254489 Shewmr4_3926 Shewanella sp. MR-4 F0F1 ATP synthase subunit gamma YP_736046.1 4689735 R 60480 CDS YP_736047.1 113972254 4254490 complement(4690646..4692187) 1 NC_008321.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 4692187 4254490 Shewmr4_3927 Shewanella sp. MR-4 F0F1 ATP synthase subunit alpha YP_736047.1 4690646 R 60480 CDS YP_736048.1 113972255 4254491 complement(4692202..4692735) 1 NC_008321.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 4692735 4254491 Shewmr4_3928 Shewanella sp. MR-4 F0F1 ATP synthase subunit delta YP_736048.1 4692202 R 60480 CDS YP_736049.1 113972256 4254492 complement(4692752..4693222) 1 NC_008321.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 4693222 4254492 Shewmr4_3929 Shewanella sp. MR-4 F0F1 ATP synthase subunit B YP_736049.1 4692752 R 60480 CDS YP_736050.1 113972257 4254493 complement(4693261..4693512) 1 NC_008321.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 4693512 4254493 Shewmr4_3930 Shewanella sp. MR-4 F0F1 ATP synthase subunit C YP_736050.1 4693261 R 60480 CDS YP_736051.1 113972258 4254494 complement(4693583..4694377) 1 NC_008321.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 4694377 4254494 Shewmr4_3931 Shewanella sp. MR-4 F0F1 ATP synthase subunit A YP_736051.1 4693583 R 60480 CDS YP_736052.1 113972259 4254495 complement(4694390..4694773) 1 NC_008321.1 PFAM: ATP synthase I chain; KEGG: son:SO4754 ATP synthase protein I; ATP synthase I chain 4694773 4254495 Shewmr4_3932 Shewanella sp. MR-4 ATP synthase I chain YP_736052.1 4694390 R 60480 CDS YP_736053.1 113972260 4254496 complement(4694999..4695877) 1 NC_008321.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: son:SO4755 ParB family protein; chromosome segregation DNA-binding protein 4695877 4254496 Shewmr4_3933 Shewanella sp. MR-4 chromosome segregation DNA-binding protein YP_736053.1 4694999 R 60480 CDS YP_736054.1 113972261 4254497 complement(4695887..4696675) 1 NC_008321.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO4756 ParA family protein; chromosome segregation ATPase 4696675 4254497 Shewmr4_3934 Shewanella sp. MR-4 chromosome segregation ATPase YP_736054.1 4695887 R 60480 CDS YP_736055.1 113972262 4254498 complement(4696750..4697370) 1 NC_008321.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4697370 gidB 4254498 gidB Shewanella sp. MR-4 16S rRNA methyltransferase GidB YP_736055.1 4696750 R 60480 CDS YP_736056.1 113972263 4254499 complement(4697488..4699377) 1 NC_008321.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4699377 4254499 Shewmr4_3936 Shewanella sp. MR-4 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_736056.1 4697488 R 60480 CDS YP_736057.1 113972264 4254500 complement(4699818..4700258) 1 NC_008321.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 4700258 4254500 Shewmr4_3937 Shewanella sp. MR-4 flavodoxin YP_736057.1 4699818 R 60480 CDS YP_736058.1 113972265 4254501 4700437..4701984 1 NC_008321.1 PFAM: TGF-beta receptor, type I/II extracellular region; KEGG: son:SO0002 proton/peptide symporter family protein; TGF-beta receptor, type I/II extracellular region 4701984 4254501 Shewmr4_3938 Shewanella sp. MR-4 TGF-beta receptor, type I/II extracellular region YP_736058.1 4700437 D 60480 CDS YP_736059.1 113972266 4254502 complement(4702090..4703451) 1 NC_008321.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4703451 trmE 4254502 trmE Shewanella sp. MR-4 tRNA modification GTPase TrmE YP_736059.1 4702090 R 60480 CDS YP_736060.1 113972267 4254503 complement(4703556..4705181) 1 NC_008321.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: son:SO0004 inner membrane protein, 60 kDa; protein translocase subunit yidC 4705181 4254503 Shewmr4_3940 Shewanella sp. MR-4 protein translocase subunit yidC YP_736060.1 4703556 R 60480 CDS YP_736061.1 113972268 4254504 complement(4705185..4705439) 1 NC_008321.1 PFAM: protein of unknown function DUF37; KEGG: son:SO0005 conserved hypothetical protein TIGR00278; hypothetical protein 4705439 4254504 Shewmr4_3941 Shewanella sp. MR-4 hypothetical protein YP_736061.1 4705185 R 60480 CDS YP_736062.1 113972269 4254505 complement(4705406..4705762) 1 NC_008321.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4705762 rnpA 4254505 rnpA Shewanella sp. MR-4 ribonuclease P YP_736062.1 4705406 R 60480 CDS YP_736063.1 113972270 4254506 complement(4705783..4705920) 1 NC_008321.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4705920 rpmH 4254506 rpmH Shewanella sp. MR-4 50S ribosomal protein L34 YP_736063.1 4705783 R 60480 CDS