-- dump date 20140620_064012 -- class Genbank::CDS -- table cds_note -- id note YP_732140.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_732141.1 KEGG: son:SO0009 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain YP_732142.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_732143.1 KEGG: son:SO0011 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II YP_732144.1 PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO0012 glutathione S-transferase family protein YP_732145.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vvu:VV20874 transcriptional regulator YP_732146.1 KEGG: son:SO0013 hypothetical protein YP_732147.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_732148.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_732149.1 KEGG: son:SO0016 DNA-3-methyladenine glycosidase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_732150.1 PFAM: amidohydrolase; WD40 domain protein beta Propeller; KEGG: son:SO0017 hypothetical amidohydrolase YP_732151.1 KEGG: son:SO0018 hypothetical protein YP_732152.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs YP_732153.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cvi:CV0239 hypothetical protein YP_732154.1 PFAM: Integrase, catalytic region; KEGG: pcr:Pcryo_0715 Integrase, catalytic region YP_732155.1 KEGG: dde:Dde_2987 transposase YP_732156.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_732157.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_732158.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters YP_732159.1 PFAM: protein of unknown function UPF0029; KEGG: son:SO0023 conserved hypothetical protein TIGR00257 YP_732160.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: son:SO0024 potassium uptake protein TrkH YP_732161.1 KEGG: son:SO0025 protoporphyrinogen oxidase YP_732162.1 PFAM: regulatory protein, ArsR; KEGG: son:SO0026 transcriptional regulator, ArsR family YP_732163.1 KEGG: son:SO0027 protoporphyrinogen oxidase YP_732164.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: son:SO0028 potassium uptake protein TrkH YP_732165.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_732166.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; Methyltransferase type 11; KEGG: son:SO0030 Sun protein YP_732167.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: son:SO0031 methionyl-tRNA formyltransferase YP_732168.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_732169.1 PFAM: Peptidoglycan-binding LysM; KEGG: son:SO0033 LysM domain protein YP_732170.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: son:SO0034 DNA processing protein DprA, putative YP_732171.1 PFAM: protein of unknown function DUF494; KEGG: son:SO0035 Smg protein YP_732172.1 PFAM: DNA topoisomerase, type IA, zn finger domain protein; KEGG: son:SO0036 topoisomerase DNA-binding C4 zinc finger domain protein YP_732173.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain protein; KEGG: son:SO0037 Sua5/YciO/YrdC/YwlC family protein YP_732174.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_732175.1 PFAM: globin; KEGG: son:SO0039 hypothetical globin YP_732176.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_732177.1 PFAM: protein of unknown function DUF1488; KEGG: son:SO0041 hypothetical protein YP_732178.1 KEGG: son:SO0042 carbonic anhydrase, family 3 YP_732179.1 PFAM: protein of unknown function UPF0153; KEGG: son:SO0044 hypothetical protein YP_732180.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: son:SO0045 Rrf2 family protein YP_732181.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: son:SO0046 hypothetical protein YP_732182.1 KEGG: son:SO0047 carboxyl-terminal protease, putative; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_732183.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_732184.1 PFAM: Rhodanese domain protein; KEGG: son:SO0050 rhodanese domain protein YP_732185.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_732186.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_732187.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0054 conserved hypothetical protein TIGR00275 YP_732189.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: son:SO0057 potassium uptake protein, Trk family YP_732190.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: son:SO0058 potassium uptake protein, putative YP_732191.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO0059 transcriptional regulatory protein KdpE YP_732192.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0060 sensor histidine kinase YP_732193.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: csa:Csal_1778 pirin-like protein YP_732194.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: cvi:CV1771 probable sensor kinase protein YP_732195.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: cvi:CV1770 probable two-component transcriptional regulator YP_732196.1 PFAM: major facilitator superfamily MFS_1; KEGG: cvi:CV1769 probable resistance protein YP_732197.1 KEGG: ppr:PBPRA1645 hypothetical protein YP_732198.1 PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_1586 protein of unknown function DUF81 YP_732199.1 PFAM: NLP/P60 protein; KEGG: son:SO0061 lipoprotein, NLP/P60 family YP_732200.1 PFAM: major facilitator superfamily MFS_1; KEGG: vch:VC1597 multidrug transporter, putative YP_732201.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: hch:HCH_04796 transcriptional regulator YP_732202.1 KEGG: atc:AGR_pTi_251 sucrose phosphorylase SplA; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_732203.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC1133 transporter, putative YP_732204.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC1136 TonB-dependent receptor YP_732205.1 PFAM: PfkB domain protein; KEGG: csa:Csal_0931 PfkB YP_732206.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis YP_732208.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: bur:Bcep18194_B1553 transcriptional regulator, AraC family YP_732209.1 KEGG: son:SO0068 hypothetical protein YP_732210.1 KEGG: son:SO0069 transport protein, putative YP_732211.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0070 ATP-binding transport protein NatA YP_732212.1 PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: son:SO0071 hydrolase, alpha/beta hydrolase fold family YP_732213.1 PFAM: regulatory protein GntR, HTH; KEGG: son:SO0072 transcriptional regulator, GntR family YP_732214.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0073 ABC transporter, ATP-binding protein YP_732215.1 KEGG: son:SO0074 hypothetical protein YP_732216.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0075 AMP-binding family protein YP_732217.1 PFAM: MORN variant repeat protein; KEGG: son:SO0076 hypothetical protein YP_732218.1 PFAM: thioesterase superfamily protein; KEGG: son:SO0077 hypothetical 4-hydroxybenzoyl-CoA thioesterase YP_732219.1 PFAM: HPP family protein; KEGG: tdn:Tmden_1127 HPP YP_732220.1 KEGG: son:SO0078 hypothetical protein YP_732221.1 KEGG: son:SO0079 hypothetical protein YP_732222.1 PFAM: thioesterase superfamily protein; KEGG: son:SO0080 hypothetical 4-hydroxybenzoyl-CoA thioesterase YP_732223.1 PFAM: regulatory protein, MerR; KEGG: sdn:Sden_1798 regulatory protein, MerR YP_732224.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sdn:Sden_1799 NAD(P)H dehydrogenase (quinone) YP_732225.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: vpa:VP1790 hypothetical protein YP_732226.1 PFAM: regulatory protein, MerR; KEGG: son:SO0082 transcriptional regulator, MerR family YP_732227.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: son:SO0083 carboxymuconolactone decarboxylase family protein YP_732228.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0084 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein YP_732229.1 KEGG: son:SO0085 hypothetical protein YP_732230.1 KEGG: son:SO4661 hypothetical protein YP_732231.1 KEGG: son:SO0087 hypothetical protein YP_732232.1 PFAM: protein of unknown function DUF885; KEGG: cps:CPS_3202 putative lipoprotein YP_732233.1 PFAM: regulatory protein, MarR; KEGG: hch:HCH_03311 transcriptional regulator YP_732234.1 PFAM: Siderophore-interacting protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: rba:RB11489 vulnibactin utilization protein VIUB YP_732235.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_732236.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: son:SO0096 histidine utilization repressor YP_732237.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_732238.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_732239.1 KEGG: son:SO0098.1 formate dehydrogenase-N, nitrate-inducible, alpha subunit; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase Fe4S4 region YP_732240.1 KEGG: son:SO0101 formate dehydrogenase, major subunit (formate dehydrogenase alpha subunit); TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region YP_732241.1 TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO0102 formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit) YP_732242.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO0103 formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit) YP_732243.1 TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: son:SO0104 fdhE protein YP_732244.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_732245.1 TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: son:SO0106 selenocysteine-specific translation elongation factor YP_732246.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_732247.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: son:SO0108 hypothetical transporter component YP_732248.1 PFAM: SirA family protein; KEGG: son:SO0109 hypothetical protein YP_732249.1 PFAM: peptidase M48, Ste24p; KEGG: son:SO0110 hypothetical protease YP_732250.1 KEGG: son:SO0111 hypothetical protein YP_732251.1 KEGG: son:SO0112 hypothetical protein YP_732252.1 KEGG: son:SO0113 hypothetical protein YP_732253.1 KEGG: son:SO0114 hypothetical protein YP_732254.1 PFAM: protein of unknown function DUF1090; KEGG: son:SO0119 hypothetical protein YP_732255.1 PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0121 hypothetical small-conductance mechanosensitive channel YP_732256.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO0122 transporter, LysE family YP_732257.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0123 acyltransferase family protein YP_732258.1 KEGG: son:SO0125 hypothetical protein YP_732259.1 PFAM: protein of unknown function DUF833; KEGG: son:SO0126 hypothetical protein YP_732260.1 KEGG: son:SO0127 hypothetical protein YP_732261.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO0129 conserved hypothetical protein TIGR00427 YP_732262.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcv:XCV2894 TonB-dependent outer membrane receptor YP_732263.1 PFAM: PKD domain containing protein; peptidase M6, immune inhibitor A; KEGG: son:SO0130 protease, putative YP_732264.1 PFAM: Chorismate lyase; KEGG: son:SO0131 putative chorismate--pyruvate lyase YP_732265.1 PFAM: flagellar basal body-associated protein FliL; KEGG: son:SO0132 flagellar protein FliL, putative YP_732266.1 PFAM: protein of unknown function DUF890; KEGG: son:SO0134 hypothetical protein YP_732267.1 PFAM: protein of unknown function DUF333; KEGG: son:SO0135 hemolysin protein, putative YP_732268.1 KEGG: son:SO0136 hypothetical protein YP_732269.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase YP_732270.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: son:SO0138 molybdopterin biosynthesis MoeA protein YP_732271.1 PFAM: Ferritin, Dps family protein; KEGG: son:SO0139 ferritin YP_732272.1 KEGG: son:SO0141 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_732273.1 DHBP synthase; functions during riboflavin biosynthesis YP_732274.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO0144 protease II YP_732275.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: son:SO0145 hypothetical URI domain endonuclease YP_732277.1 PFAM: regulatory protein, LysR; KEGG: ilo:IL1611 transcriptional regulator, LysR family YP_732278.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: ilo:IL1610 acyl carrier protein phosphodiesterase YP_732279.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sco:SCO4974 deaminase YP_732281.1 KEGG: son:SO0150 lipoprotein, putative YP_732282.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0151 hypothetical SAM-dependent methyltransferase YP_732283.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: son:SO0152 hypothetical carboxypeptidase YP_732284.1 KEGG: son:SO0154 hypothetical protein YP_732285.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO0157 proton/glutamate symporter YP_732286.1 KEGG: son:SO0159 hypothetical protein YP_732287.1 KEGG: ilo:IL0291 hypothetical protein YP_732288.1 PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_04311 outer membrane protein and related peptidoglycan-associated (LipO)protein YP_732289.1 PFAM: AbgT putative transporter; short chain fatty acid transporter; KEGG: son:SO0160 transporter, putative YP_732290.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_732291.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_732292.1 PFAM: RNA-binding S4 domain protein; KEGG: son:SO0164 heat shock protein 15 YP_732293.1 TIGRFAM: general secretion pathway protein C; KEGG: son:SO0165 general secretion pathway protein C YP_732294.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: son:SO0166 general secretion pathway protein D YP_732295.1 KEGG: son:SO0167 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_732296.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: son:SO0168 general secretion pathway protein F YP_732297.1 TIGRFAM: general secretion pathway protein G; PFAM: methylation site containing protein; Bacterial type II secretion system protein G; KEGG: son:SO0169 general secretion pathway protein G YP_732298.1 KEGG: son:SO0170 general secretion pathway protein H YP_732299.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; methylation site containing protein; KEGG: son:SO0171 general secretion pathway protein I YP_732300.1 TIGRFAM: general secretion pathway protein J; PFAM: methylation site containing protein; KEGG: son:SO0172 general secretion pathway protein J YP_732301.1 PFAM: General secretion pathway protein K; KEGG: son:SO0173 general secretion pathway protein K YP_732302.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: son:SO0174 general secretion pathway protein L YP_732303.1 PFAM: General secretion pathway M protein; KEGG: son:SO0175 general secretion pathway protein M YP_732304.1 PFAM: type II secretion system protein N; KEGG: son:SO0176 general secretion pathway protein N YP_732305.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0177 HAD-superfamily hydrolase, subfamily IA, variant 3 protein family YP_732306.1 KEGG: son:SO0189 fibronectin type III domain protein YP_732307.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose YP_732308.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: son:SO0191 cysQ protein YP_732309.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0192 acetyltransferase, GNAT family YP_732310.1 PFAM: regulatory protein, TetR; KEGG: son:SO0193 transcriptional regulator, TetR family YP_732311.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: son:SO0194 acyltransferase family protein YP_732312.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_732313.1 catalyzes the formation of selenophosphate from selenide and ATP YP_732314.1 PFAM: fatty acid desaturase; KEGG: son:SO0197 fatty acid desaturase, family 1 YP_732315.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis YP_732316.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs YP_732317.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_732318.1 PFAM: RNP-1 like RNA-binding protein; KEGG: son:SO0208 RNA-binding protein YP_732319.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_732320.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_732321.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_732322.1 KEGG: son:SO0216 hypothetical protein YP_732323.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_732324.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_732325.1 KEGG: son:SO0219 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein YP_732326.1 binds directly to 23S ribosomal RNA YP_732327.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_732328.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_732329.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_732330.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_732331.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_732332.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_732333.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_732334.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_732335.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_732336.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_732337.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_732338.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_732339.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_732340.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_732341.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_732342.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_732343.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_732344.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_732345.1 one of the stabilizing components for the large ribosomal subunit YP_732346.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_732347.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_732348.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_732349.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_732350.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_732351.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_732352.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_732353.1 binds 5S rRNA along with protein L5 and L25 YP_732354.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_732355.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_732356.1 late assembly protein YP_732357.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_732358.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_732359.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_732360.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_732361.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_732362.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_732363.1 is a component of the macrolide binding site in the peptidyl transferase center YP_732364.1 KEGG: vch:VCA0212 hypothetical protein YP_732365.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane YP_732366.1 PFAM: Heme exporter protein D (CcmD); KEGG: son:SO0260 heme exporter protein CcmD YP_732367.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: son:SO0261 heme exporter protein CcmC YP_732368.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: son:SO0262 heme exporter protein CcmB YP_732369.1 ATP-binding protein; required for proper cytochrome c maturation YP_732370.1 PFAM: cytochrome c, class I; KEGG: son:SO0264 cytochrome c YP_732371.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0265 cytochrome c-type biogenesis protein CcmH YP_732372.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO0266 cytochrome c-type biogenesis protein CcmF YP_732373.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: son:SO0267 thiol:disulfide interchange protein DsbE YP_732374.1 PFAM: cytochrome C biogenesis protein; KEGG: son:SO0268 cytochrome c-type biogenesis protein CcmH YP_732375.1 PFAM: Redoxin domain protein; KEGG: son:SO0269 thioredoxin, putative YP_732376.1 KEGG: son:SO4492 hypothetical protein YP_732377.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: son:SO4488 sensor histidine kinase YP_732378.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4487 DNA-binding response regulator YP_732379.1 PFAM: Propeptide, PepSY amd peptidase M4; KEGG: son:SO4486 hypothetical protein YP_732380.1 KEGG: son:SO4485 diheme cytochrome c YP_732381.1 KEGG: son:SO4484 cytochrome c-type protein Shp YP_732382.1 PFAM: cytochrome B561; KEGG: son:SO4483 cytochrome b, putative YP_732383.1 KEGG: son:SO4482 hypothetical protein YP_732384.1 KEGG: son:SO4481 hypothetical protein YP_732385.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mfa:Mfla_2592 transcriptional regulator, LysR family YP_732386.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hch:HCH_02025 short-chain alcohol dehydrogenase-like protein YP_732387.1 PFAM: aldehyde dehydrogenase; KEGG: son:SO4480 aldehyde dehydrogenase YP_732388.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: son:SO4479 sigma-54 dependent transcriptional regulator YP_732389.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4478 sensor protein CpxA YP_732390.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4477 transcriptional regulatory protein CpxR YP_732391.1 PFAM: protein of unknown function, Spy-related; KEGG: son:SO4476 spheroplast protein y precursor, putative YP_732392.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: son:SO4475 cation efflux family protein YP_732393.1 KEGG: son:SO4474 hypothetical protein YP_732394.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: son:SO4473 outer membrane protein, putative YP_732395.1 KEGG: son:SO4472 nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_732396.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: son:SO4471 nitrogen regulation protein YP_732397.1 KEGG: son:SO4470 hypothetical protein YP_732398.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO4469 alcohol dehydrogenase, iron-containing YP_732399.1 PFAM: regulatory protein, TetR; KEGG: son:SO4468 transcriptional regulator, TetR family YP_732400.1 PFAM: protein of unknown function DUF1255; KEGG: son:SO4467 hypothetical protein YP_732401.1 PFAM: protein of unknown function DUF323; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4465 hypothetical protein YP_732402.1 KEGG: son:SO4462 hypothetical protein YP_732403.1 KEGG: son:SO4461 hypothetical protein YP_732404.1 PFAM: PfkB domain protein; KEGG: son:SO4458 carbohydrate kinase, PfkB family YP_732405.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4457 GGDEF domain protein YP_732406.1 PFAM: 3-alpha; MOSC domain containing protein; KEGG: son:SO4456 hypothetical protein YP_732407.1 KEGG: son:SO4455 hypothetical protein YP_732408.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4454 methyl-accepting chemotaxis protein YP_732409.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: son:SO4453 electron transfer flavoprotein-ubiquinone oxidoreductase, putative YP_732410.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_732411.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_732412.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: son:SO4450 molybdenum cofactor biosynthesis protein D YP_732413.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: son:SO4449 molybdenum cofactor biosynthesis protein E YP_732414.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: son:SO4448 molybdenum ABC transporter, periplasmic molybdenum-binding protein YP_732415.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4447 molybdenum ABC transporter, permease protein YP_732416.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4446 molybdenum ABC transporter, ATP-binding protein YP_732417.1 KEGG: son:SO4429 hypothetical protein YP_732418.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4428 DNA-binding response regulator YP_732419.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4427 sensor histidine kinase YP_732420.1 TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: sdn:Sden_0111 pseudouridine synthase RluA-like protein YP_732421.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4425 GGDEF family protein YP_732422.1 PFAM: protein of unknown function UPF0057; KEGG: son:SO4423 hypothetical protein YP_732423.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4423.1 hypothetical ferric aerobactin receptor YP_732424.1 KEGG: son:SO4421 hypothetical protein YP_732425.1 PFAM: peptidase M23B; KEGG: son:SO4420 peptidase, M23/M37 family YP_732426.1 KEGG: son:SO4419 hypothetical protein YP_732427.1 PFAM: CHAP domain containing protein; KEGG: son:SO4418 trypanothione synthetase domain protein YP_732428.1 KEGG: rso:RS05497 hypothetical protein YP_732429.1 PFAM: regulatory protein, TetR; KEGG: hch:HCH_03535 transcriptional regulator YP_732430.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters YP_732431.1 KEGG: son:SO4414 hypothetical protein YP_732432.1 PFAM: aminotransferase, class V; KEGG: son:SO4413 hypothetical kynureninase YP_732433.1 KEGG: son:SO4412 hypothetical protein YP_732434.1 PFAM: sodium:dicarboxylate symporter; KEGG: sdn:Sden_3453 sodium:dicarboxylate symporter YP_732435.1 PFAM: regulatory protein, TetR; KEGG: son:SO1415 transcriptional regulator, TetR family YP_732436.1 TIGRFAM: Twin-arginine translocation pathway signal; flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: son:SO1414 flavocytochrome c flavin subunit, putative YP_732437.1 KEGG: son:SO1413 tetraheme cytochrome c, putative YP_732438.1 KEGG: son:SO1412 hypothetical protein YP_732439.1 KEGG: son:SO1411 hypothetical protein YP_732440.1 KEGG: son:SO1410 hypothetical protein YP_732441.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eca:ECA0876 TonB-dependent ferric aerobactin receptor YP_732442.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme YP_732443.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: son:SO4408 virulence regulator BipA YP_732444.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: vpa:VPA0381 putative transcription regulator YP_732445.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vpa:VPA0382 putative sorbitol-6-phosphate 2-dehydrogenase YP_732446.1 KEGG: vpa:VPA0383 hypothetical protein YP_732447.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: vpa:VPA0384 hypothetical protein YP_732448.1 KEGG: son:SO4405 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase YP_732449.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4404 iron-sulfur cluster-binding protein YP_732450.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, transmembrane region; KEGG: tdn:Tmden_1328 diguanylate cyclase (GGDEF domain) YP_732451.1 KEGG: son:SO4403 hypothetical protein YP_732452.1 KEGG: son:SO4402 hypothetical protein YP_732453.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease YP_732454.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO4400 proline iminopeptidase, putative YP_732455.1 KEGG: son:SO4399 hypothetical protein YP_732456.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_732457.1 TIGRFAM: thioesterase domain, putative; KEGG: son:SO4397 hypothetical acetyltransferase YP_732458.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds YP_732459.1 KEGG: son:SO4395 hypothetical protein YP_732460.1 PFAM: Rhodanese domain protein; KEGG: son:SO4394 phage shock protein E YP_732461.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: lpp:plpp0134 hypothetical protein YP_732462.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: xcv:XCV4391 benzoate permease YP_732463.1 PFAM: chemotaxis sensory transducer; KEGG: psp:PSPPH_5044 methyl-accepting chemotaxis protein YP_732464.1 PFAM: electron transport protein SCO1/SenC; KEGG: pae:PA0114 hypothetical protein YP_732465.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO4393 acetyltransferase, GNAT family YP_732466.1 KEGG: plu:plu0332 hypothetical protein YP_732468.1 KEGG: xac:XAC2266 hypothetical protein YP_732469.1 PFAM: plasmid stabilization system; KEGG: vch:VCA0385 hypothetical protein YP_732470.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: vvy:VV1866 hypothetical protein YP_732471.1 KEGG: son:SO4384 hypothetical protein YP_732472.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_732473.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_732474.1 KEGG: son:SO4381 thioester dehydrase family protein YP_732475.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_732476.1 KEGG: son:SO4379 hypothetical protein YP_732477.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: son:SO4378 FAD-binding protein YP_732478.1 KEGG: son:SO4377 hypothetical protein YP_732479.1 KEGG: son:SO4376 hypothetical protein YP_732480.1 PFAM: thioesterase superfamily protein; KEGG: son:SO4375 hypothetical 4-hydroxybenzoyl-CoA thioesterase YP_732481.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO4374 histidine ammonia-lyase, putative YP_732482.1 PFAM: glycosyl transferase, family 2; lipid A biosynthesis acyltransferase; KEGG: son:SO4373 glycosyl transferase, group 2 family protein YP_732483.1 KEGG: son:SO4372 thioester dehydrase family protein YP_732484.1 KEGG: son:SO4371 hypothetical protein YP_732485.1 KEGG: son:SO4370 hypothetical protein YP_732486.1 carries the fatty acid chain in fatty acid biosynthesis YP_732487.1 KEGG: son:SO4368 acyl carrier protein, putative YP_732488.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO4367 acyltransferase family protein YP_732489.1 KEGG: son:SO4366 hypothetical protein YP_732490.1 KEGG: son:SO4365 hypothetical protein YP_732491.1 catalyzes branch migration in Holliday junction intermediates YP_732492.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pfl:PFL_3664 periplasmic sugar-binding domain protein YP_732493.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; histidine kinase, HAMP region domain protein; KEGG: ilo:IL2535 intracellular signaling protein (GAF,GGDEF domains) YP_732494.1 PFAM: protein of unknown function UPF0153; KEGG: son:SO4354 hypothetical Fe-S-cluster oxidoreductase YP_732495.1 KEGG: son:SO4353 hypothetical protein YP_732496.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO4351 CBS domain protein YP_732497.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate YP_732498.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_732499.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_732500.1 KEGG: son:SO4346 acetolactate synthase small subunit YP_732501.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_732502.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_732503.1 PFAM: aminotransferase, class V; KEGG: son:SO4343 aminotransferase, class V YP_732504.1 KEGG: son:SO4342 hypothetical protein YP_732506.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO4335 phosphatidylglycerophosphatase B, putative YP_732507.1 PFAM: Inner membrane CreD family protein; KEGG: son:SO4334 inner membrane protein, putative YP_732508.1 KEGG: son:SO4333 hypothetical protein YP_732509.1 PFAM: protein of unknown function DUF1006; KEGG: son:SO4332 hypothetical protein YP_732510.1 KEGG: son:SO4331 hypothetical protein YP_732511.1 KEGG: son:SO4330 hypothetical protein YP_732512.1 PFAM: protein of unknown function DUF526; KEGG: son:SO4329 hypothetical protein YP_732513.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: son:SO4325 ATP-dependent DNA helicase Rep YP_732514.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO4324 GGDEF domain protein YP_732515.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO4323 GGDEF domain protein YP_732516.1 KEGG: son:SO4322 hypothetical protein YP_732517.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO4321 OmpA family protein YP_732518.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: son:SO4320 agglutination protein YP_732519.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: son:SO4319 HlyD family secretion protein YP_732520.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4318 toxin secretion ATP-binding protein YP_732521.1 TIGRFAM: putative outer membrane adhesin like protein; PFAM: Hemolysin-type calcium-binding region; KEGG: son:SO4317 RTX toxin, putative YP_732522.1 PFAM: HemY domain protein; KEGG: son:SO4316 HemY protein YP_732523.1 PFAM: protein of unknown function DUF513, hemX; KEGG: son:SO4315 hemX protein YP_732524.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: son:SO4314 uroporphyrinogen-III synthase YP_732525.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_732526.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP YP_732527.1 PFAM: Frataxin family protein; KEGG: son:SO4311 CyaY protein YP_732528.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: son:SO4309 diaminopimelate decarboxylase YP_732529.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_732530.1 PFAM: protein of unknown function DUF484; KEGG: son:SO4307 hypothetical protein YP_732531.1 TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO4306 integrase/recombinase XerC YP_732532.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO4305 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein YP_732533.1 PFAM: HupE/UreJ protein; KEGG: son:SO4304 urease accessory protein UreJ YP_732534.1 PFAM: AAA-4 family protein; KEGG: son:SO4303 hypothetical protein YP_732535.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: son:SO4302 hypothetical protein YP_732536.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription YP_732537.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: son:SO0394 tRNA-dihydrouridine synthase B YP_732538.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_732539.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit YP_732540.1 PFAM: fumarate reductase respiratory complex, transmembrane subunit; KEGG: son:SO0397 fumarate reductase cytochrome B subunit YP_732541.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_732542.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_732543.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0400 hypothetical protein YP_732544.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0401 alcohol dehydrogenase, zinc-containing YP_732545.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0402 transcriptional regulator, LysR family YP_732546.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_732547.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0406 thioredoxin 1 YP_732548.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation YP_732549.1 PFAM: Ppx/GppA phosphatase; KEGG: son:SO0408 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase YP_732550.1 KEGG: son:SO0409 hypothetical protein YP_732551.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: son:SO0410 mutator mutT protein YP_732552.1 PFAM: protein of unknown function DUF329; KEGG: son:SO0411 hypothetical protein YP_732553.1 PFAM: protein of unknown function DUF1342; KEGG: son:SO0412 hypothetical protein YP_732554.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_732555.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: son:SO0414 leader peptidase (prepilin peptidase) / N-methyltransferase YP_732556.1 PFAM: type II secretion system protein; KEGG: son:SO0415 type IV pilus biogenesis protein PilC YP_732557.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO0416 type IV pilus biogenesis protein PilB YP_732558.1 PFAM: O-antigen polymerase; KEGG: eli:ELI_00020 hypothetical protein YP_732559.1 PFAM: methylation site containing protein; KEGG: tbd:Tbd_2200 pilus assembly protein PilA YP_732560.1 PFAM: O-antigen polymerase; KEGG: vch:VC0393 hypothetical protein YP_732561.1 KEGG: sdn:Sden_3387 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_732562.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: son:SO0421 AmpD protein YP_732563.1 involved in regulation of beta-lactamase; putative signaling protein YP_732564.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex YP_732565.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_732566.1 KEGG: son:SO0425 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein YP_732567.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_732568.1 KEGG: son:SO0427 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_732569.1 PFAM: surface antigen (D15); Patatin; KEGG: son:SO0428 hypothetical protein YP_732570.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO0429 peptidase, M13 family YP_732571.1 PFAM: Integrase, catalytic region; KEGG: pcr:Pcryo_0715 Integrase, catalytic region YP_732572.1 KEGG: dde:Dde_2987 transposase YP_732573.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate YP_732574.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_732575.1 binds specifically to the major sigma factor sigma 70; active in stationary phase YP_732576.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_732577.1 KEGG: son:SO0437 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_732578.1 PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: son:SO0438 short chain dehydrogenase YP_732579.1 KEGG: son:SO0439 hypothetical protein YP_732580.1 KEGG: son:SO0440 hypothetical protein YP_732581.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_732582.1 involved in de novo purine biosynthesis YP_732583.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators YP_732584.1 PFAM: permease; KEGG: son:SO0444 hypothetical protein YP_732585.1 PFAM: band 7 protein; KEGG: son:SO0445 HflC protein, putative YP_732586.1 KEGG: son:SO0447 hypothetical protein YP_732587.1 KEGG: son:SO0448 hypothetical protein YP_732588.1 PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO0449 hypothetical protein YP_732589.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0450 major facilitator family protein YP_732590.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: vpa:VPA0476 hypothetical protein YP_732592.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vch:VCA0025 transporter, NadC family YP_732593.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0452 thioredoxin 2 YP_732594.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO0453 peptidyl-prolyl cis-trans isomerase FkbP YP_732595.1 KEGG: chy:CHY_1906 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein YP_732596.1 KEGG: son:SO0454 hypothetical protein YP_732597.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO0455 hypothetical transporter YP_732598.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: son:SO0456 immunogenic-related protein YP_732599.1 KEGG: son:SO0458 hypothetical protein YP_732600.1 PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: son:SO0459 hypothetical protein YP_732601.1 KEGG: son:SO0461 hypothetical protein YP_732602.1 KEGG: son:SO0462 hypothetical protein YP_732603.1 PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: son:SO0463 hypothetical protein YP_732604.1 PFAM: NUDIX hydrolase; KEGG: son:SO0464 MutT/nudix family protein YP_732605.1 PFAM: SEC-C motif domain protein; KEGG: ppr:PBPRA0194 hypothetical protein YP_732606.1 KEGG: hch:HCH_06329 hypothetical protein YP_732607.1 KEGG: vvy:VV0261 hypothetical protein YP_732608.1 KEGG: vpa:VPA1255 hypothetical protein YP_732609.1 KEGG: psp:PSPPH_0607 hypothetical protein YP_732610.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair. YP_732611.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway YP_732613.1 PFAM: dihydroorotate dehydrogenase; 2-nitropropane dioxygenase, NPD; KEGG: son:SO0471 hypothetical dioxygenase YP_732614.1 KEGG: sdn:Sden_3320 hypothetical protein YP_732615.1 PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: cps:CPS_0994 hypothetical protein YP_732616.1 PFAM: protein of unknown function UPF0118; KEGG: son:SO0472 hypothetical protein YP_732617.1 KEGG: xcv:XCV4020 putative mitomycin resistance protein YP_732618.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO4003 response regulator YP_732619.1 KEGG: son:SO4002 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; extracellular solute-binding protein, family 3 YP_732620.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; KEGG: son:SO3999 sensor histidine kinase YP_732621.1 KEGG: son:SO0474 hypothetical protein YP_732622.1 PFAM: Redoxin domain protein; KEGG: son:SO0476 thioredoxin, putative YP_732623.1 PFAM: cytochrome C biogenesis protein; KEGG: son:SO0477 cytochrome c-type biogenesis protein NrfF precursor YP_732624.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO0478 cytochrome c-type biogenesis protein CcmF YP_732625.1 KEGG: son:SO0479 cytochrome c, putative YP_732626.1 SMART: Rhodanese domain protein; KEGG: son:SO0480 hypothetical protein YP_732627.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO0481 peptidyl-prolyl cis-trans isomerase, FKBP-type YP_732628.1 KEGG: son:SO0482 formate-dependent nitrite reductase, NrfG protein YP_732629.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO0483 formate-dependent nitrite reductase, NrfC protein YP_732630.1 PFAM: Polysulphide reductase, NrfD; KEGG: son:SO0484 formate-dependent nitrite reductase, NrfD protein YP_732631.1 PFAM: NosL family protein; KEGG: son:SO0485 NosL protein YP_732632.1 PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: son:SO0486 copper ABC transporter, periplasmic copper-binding protein YP_732633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0487 copper ABC transporter, ATP-binding protein YP_732634.1 KEGG: son:SO0488 copper ABC transporter, permease protein YP_732635.1 PFAM: transcriptional regulator domain protein; KEGG: son:SO0490 transcriptional regulator YP_732636.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO0491 peptidase, M13 family YP_732637.1 PFAM: fatty acid cistrans isomerase; KEGG: vvy:VVA0636 fatty acid cis/trans isomerase YP_732638.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO4539 serine protease, subtilase family YP_732639.1 KEGG: son:SO0492 hypothetical flavoprotein oxygenase YP_732641.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3360 transposase IS116/IS110/IS902 YP_732642.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin YP_732643.1 TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: son:SO0506 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases YP_732644.1 KEGG: son:SO0508 hypothetical protein YP_732645.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr4870 MFS permease YP_732646.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: son:SO0510 oxidoreductase, short-chain dehydrogenase/reductase family YP_732647.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: son:SO0511 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_732648.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_732649.1 PFAM: Class I peptide chain release factor; KEGG: son:SO0513 hypothetical protein YP_732650.1 KEGG: son:SO0514 hypothetical protein YP_732651.1 KEGG: son:SO0515 hypothetical protein YP_732652.1 KEGG: son:SO0516 hypothetical protein YP_732653.1 PFAM: outer membrane efflux protein; KEGG: son:SO0518 outer membrane efflux family protein, putative YP_732654.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO0519 cation efflux protein, putative YP_732655.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SO0520 heavy metal efflux pump, CzcA family YP_732656.1 KEGG: son:SO0521 hypothetical protein YP_732657.1 KEGG: son:SO0521 hypothetical protein YP_732658.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_732659.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0523 transcriptional regulator, LysR family YP_732660.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO0524 HlyD family secretion protein YP_732661.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0525 drug resistance transporter, EmrB/QacA family protein YP_732662.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0526 acetyltransferase, GNAT family YP_732663.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0527 hypothetical protein YP_732664.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: noc:Noc_1911 two component sigma-54 specific, transcriptional regulator, fis family YP_732665.1 KEGG: vpa:VPA0990 hypothetical protein YP_732666.1 PFAM: Peptidase M11, gametolysin; KEGG: vpa:VPA0991 hypothetical protein YP_732667.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: son:SO0528 hypothetical protein YP_732668.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1156 TonB-dependent receptor YP_732669.1 PFAM: regulatory protein, ArsR; KEGG: son:SO0532 arsenical resistence operon repressor YP_732670.1 PFAM: Bile acid:sodium symporter; KEGG: son:SO0534 arsenical pump membrane protein, putative YP_732671.1 PFAM: permease; KEGG: son:SO0535 hypothetical protein YP_732672.1 KEGG: son:SO0536 redox-active disulfide protein 2 YP_732673.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate YP_732674.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0539 transporter, putative YP_732675.1 KEGG: son:SO0540 hypothetical protein YP_732676.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: son:SO0541 metallo-beta-lactamase family protein YP_732677.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1704; KEGG: son:SO0542 hypothetical protein YP_732678.1 KEGG: sdn:Sden_0651 hypothetical protein YP_732679.1 KEGG: son:SO0543 hypothetical protein YP_732680.1 KEGG: son:SO0544 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_732681.1 PFAM: response regulator receiver; KEGG: son:SO0544.1 hypothetical CheY-homologous receiver domain protein YP_732682.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: son:SO0545 response regulator YP_732683.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO0546 ribosomal protein S6 modification protein YP_732684.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO0547 hypothetical protein YP_732685.1 PFAM: histone family protein DNA-binding protein; KEGG: son:SO0548 DNA-binding protein, HU family YP_732686.1 PFAM: response regulator receiver; KEGG: son:SO0549 chemotaxis protein CheY/response regulator receiver domain protein YP_732687.1 KEGG: son:SO0550 hypothetical protein YP_732688.1 KEGG: son:SO0551 hypothetical protein YP_732689.1 KEGG: son:SO0552 hypothetical protein YP_732690.1 KEGG: son:SO0553 hypothetical protein YP_732691.1 KEGG: son:SO0554 hypothetical protein YP_732692.1 PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: son:SO0555 hypothetical protein YP_732693.1 KEGG: son:SO0556 hypothetical protein YP_732694.1 PFAM: GumN family protein; KEGG: son:SO0557 hypothetical protein YP_732695.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0558 smtA protein YP_732696.1 PFAM: MaoC domain protein dehydratase; KEGG: son:SO0559 MaoC domain protein YP_732697.1 PFAM: aldo/keto reductase; KEGG: vpa:VPA1163 oxidoreductase, aldo/keto reductase 2 family YP_732698.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_732699.1 PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0560.2 hypothetical small-conductance mechanosensitive channel YP_732700.1 KEGG: son:SO0562 hypothetical protein YP_732701.1 KEGG: son:SO0563 hypothetical protein YP_732702.1 KEGG: sdn:Sden_0526 hypothetical protein YP_732703.1 KEGG: son:SO0564 hypothetical protein YP_732704.1 PFAM: periplasmic solute binding protein; KEGG: son:SO0565 adhesion protein, putative YP_732705.1 PFAM: ABC-3 protein; KEGG: son:SO0566 ABC 3 transport family protein YP_732706.1 KEGG: son:SO0567 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase YP_732707.1 PFAM: protein of unknown function DUF1260; KEGG: son:SO0568 hypothetical protein YP_732708.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO0569 sensory box/GGDEF family protein YP_732709.1 PFAM: response regulator receiver; KEGG: son:SO0570 response regulator YP_732710.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_732711.1 KEGG: son:SO0573 hypothetical protein YP_732712.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA YP_732713.1 PFAM: PhoH family protein; SMART: AAA ATPase; Nucleotide binding protein, PINc; KEGG: son:SO0576 PhoH family protein YP_732714.1 KEGG: son:SO0577 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Cache domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_732715.1 KEGG: son:SO0578 hypothetical protein YP_732716.1 PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: son:SO0579 serine/threonine protein kinase, putative YP_732717.1 KEGG: son:SO0581 hypothetical protein YP_732718.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide YP_732719.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: son:SO0583 bacterioferritin-associated ferredoxin YP_732720.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: son:SO0584 methyl-accepting chemotaxis protein YP_732721.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO0585 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_732722.1 KEGG: son:SO0586 hypothetical protein YP_732723.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: son:SO0587 glycerophosphoryl diester phosphodiesterase YP_732724.1 PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0588 transporter, putative YP_732725.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_3514 membrane protein YP_732726.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine YP_732727.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_732728.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_732729.1 KEGG: son:SO0595 hypothetical protein YP_732730.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: son:SO0598 YjeF protein YP_732731.1 PFAM: protein of unknown function UPF0079; KEGG: son:SO0599 conserved hypothetical protein TIGR00150 YP_732732.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: son:SO0600 N-acetylmuramoyl-L-alanine amidase YP_732733.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_732734.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_732735.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: son:SO0603 host factor-I protein YP_732736.1 PFAM: GTP-binding protein, HSR1-related; KEGG: son:SO0604 GTP-binding protein HflX YP_732737.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: son:SO0605 hflK protein YP_732738.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: son:SO0606 hflC protein YP_732739.1 KEGG: son:SO0608 ubiquinol-cytochrome c reductase iron-sulfur subunit; TIGRFAM: Twin-arginine translocation pathway signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein YP_732740.1 PFAM: Cytochrome b/b6, N-terminal domain protein; Cytochrome b/b6, C-terminal domain protein; KEGG: son:SO0609 ubiquinol-cytochrome c reductase, cytochrome b YP_732741.1 PFAM: cytochrome c1; KEGG: son:SO0610 ubiquinol-cytochrome c reductase cytochrome c1 subunit YP_732742.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation YP_732743.1 PFAM: Stringent starvation protein B; KEGG: son:SO0612 stringent starvation protein b YP_732744.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: son:SO0613 para-aminobenzoate synthase glutamine amidotransferase, component II YP_732745.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: son:SO0614 dipeptidyl peptidase IV, putative YP_732746.1 KEGG: son:SO0615 hypothetical protein YP_732747.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: son:SO0616 esterase, putative YP_732748.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate YP_732749.1 PFAM: arginine N-succinyltransferase beta subunit; KEGG: son:SO0618 arginine N-succinyltransferase YP_732750.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH YP_732751.1 KEGG: son:SO0620 hypothetical protein YP_732752.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0621 sensor histidine kinase YP_732753.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO0622 DNA-binding response regulator YP_732754.1 KEGG: son:SO0623 hypothetical protein YP_732755.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons YP_732756.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO0625 hypothetical protein YP_732757.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: son:SO0627 putative 2'-5' RNA ligase YP_732758.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO0628 GGDEF domain protein YP_732759.1 TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0630 TonB-dependent receptor YP_732760.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent, C-terminal domain protein; KEGG: son:SO0632 ATP-dependent helicase HrpB YP_732761.1 KEGG: son:SO0633 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase YP_732762.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO0635 peptidyl-prolyl cis-trans isomerase C YP_732764.1 PFAM: OsmC family protein; KEGG: vpa:VP1807 hypothetical protein YP_732765.1 KEGG: vpa:VPA0336 hypothetical protein YP_732766.1 KEGG: son:SO4012 hypothetical protein YP_732767.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa2478 putative TonB-dependent receptor protein YP_732768.1 KEGG: son:SO4011 hypothetical protein YP_732769.1 KEGG: hch:HCH_03096 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_732770.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ppr:PBPRB0003 putative tetrathionate reductase, subunit A YP_732771.1 PFAM: Polysulphide reductase, NrfD; KEGG: eba:ebA3056 subunit C of a molybdoprotein, similar to that of tetrathionate reductase or polysulphide reductase YP_732772.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bpa:BPP1030 tetrathionate reductase subunit B YP_732773.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ppr:PBPRB0007 hypothetical histidine kinase YP_732774.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: vfi:VFA0103 two component response regulator YP_732775.1 KEGG: son:SO4008 hypothetical protein YP_732776.1 KEGG: son:SO4007 hypothetical protein YP_732777.1 KEGG: son:SO4006 hypothetical protein YP_732778.1 KEGG: son:SO4005 hypothetical protein YP_732779.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO4004 proton/glutamate symporter, putative YP_732780.1 PFAM: Integrase, catalytic region; KEGG: pcr:Pcryo_0715 Integrase, catalytic region YP_732781.1 KEGG: dde:Dde_2987 transposase YP_732783.1 PFAM: Uncharacterized protein UPF0114; KEGG: son:SO3997 hypothetical protein YP_732785.1 PFAM: NERD domain protein; KEGG: pha:PSHAb0100 putative orphan protein YP_732786.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_732787.1 PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: son:SO3990 dipeptidyl peptidase IV YP_732788.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO3988 aerobic respiration control protein ArcA YP_732789.1 KEGG: son:SO3987 hypothetical protein YP_732790.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive YP_732791.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO3985 hypothetical protein YP_732792.1 PFAM: Mg2 transporter protein, CorA family protein; KEGG: son:SO3984 magnesium transporter, putative YP_732793.1 PFAM: Uncharacterized conserved protein UCP006287; KEGG: son:SO3983 hypothetical protein YP_732794.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: son:SO3982 DNA-binding nitrate/nitrite response regulator YP_732795.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: son:SO3981 nitrate/nitrite sensor protein NarQ YP_732796.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552 YP_732797.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: vvy:VVA0651 GGDEF family protein YP_732798.1 KEGG: son:SO3975 hypothetical protein YP_732799.1 KEGG: son:SO3974 hypothetical protein YP_732801.1 PFAM: protein of unknown function RIO1; KEGG: son:SO3973 RIO1/ZK632.3/MJ0444 family, putative YP_732802.1 PFAM: transposase IS3/IS911 family protein; KEGG: son:SO3972 hypothetical transposase YP_732803.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: son:SO3969 OmpA family protein YP_732804.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: son:SO3967 hypothetical protein YP_732805.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO3966 magnesium transporter YP_732806.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: son:SO3965 phosphocarrier protein NPR YP_732807.1 PFAM: Uncharacterized P-loop ATPase protein UPF0042; KEGG: son:SO3964 hypothetical protein YP_732808.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: son:SO3963 nitrogen regulatory IIA protein YP_732809.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3962 ribosomal subunit interface protein YP_732810.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_732811.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3960 ABC transporter, ATP-binding protein YP_732812.1 PFAM: OstA family protein; KEGG: son:SO3959 hypothetical protein YP_732813.1 PFAM: protein of unknown function DUF1239; KEGG: son:SO3958 hypothetical protein YP_732814.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis YP_732815.1 KEGG: son:SO3956 carbohydrate isomerase, KpsF/GutQ family; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_732816.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3954 ABC transporter, ATP-binding protein, putative YP_732817.1 PFAM: protein of unknown function DUF140; KEGG: son:SO3953 putative membrane protein YP_732818.1 PFAM: Mammalian cell entry related domain protein; KEGG: son:SO3952 mce-related protein YP_732819.1 PFAM: toluene tolerance family protein; KEGG: son:SO3951 hypothetical protein YP_732820.1 KEGG: son:SO3950 SpoIIAA family protein YP_732821.1 PFAM: BolA family protein; KEGG: son:SO3949 BolA/YrbA family protein YP_732822.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_732823.1 PFAM: protein of unknown function DUF469; KEGG: vvu:VV20828 hypothetical protein YP_732824.1 PFAM: methyltransferase small; Methyltransferase small, N-terminal domain protein; KEGG: son:SO0828 ribosomal RNA small subunit methyltransferase C YP_732825.1 PFAM: Alkaline phosphatase; KEGG: son:SO0830 alkaline phosphatase YP_732826.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_732827.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_732828.1 PFAM: Endonuclease I; KEGG: son:SO0833 endonuclease I YP_732829.1 PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: son:SO0834 sprT protein, putative YP_732830.1 KEGG: son:SO0835 hypothetical protein YP_732831.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: son:SO0837 beta-lactamase, putative YP_732832.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0839 transcriptional regulator, LysR family YP_732833.1 PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase YP_732834.1 KEGG: son:SO0841 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3 YP_732835.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_732836.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0843 transcriptional regulator, LysR family YP_732837.1 KEGG: son:SO0844 hypothetical protein YP_732838.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: son:SO0845 cytochrome c-type protein NapB YP_732839.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA YP_732840.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway YP_732841.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC YP_732842.1 PFAM: NapD family protein; KEGG: son:SO0849 napD protein YP_732843.1 KEGG: son:SO0850 hypothetical protein YP_732844.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO0851 hypothetical protein YP_732845.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO0852 type IV pilus assembly protein PilV YP_732846.1 PFAM: methylation site containing protein; KEGG: son:SO0853 pilin, putative YP_732847.1 PFAM: methylation site containing protein; KEGG: son:SO0854 type IV pilin, putative YP_732848.1 KEGG: son:SO0855 hypothetical protein YP_732849.1 PFAM: protein of unknown function DUF214; KEGG: son:SO0856 putative ABC transport system permease protein YP_732850.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0857 ABC transporter, ATP-binding protein YP_732851.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO0858 sodium:alanine symporter family protein YP_732852.1 KEGG: son:SO0859 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_732853.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO0860 response regulator YP_732854.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: son:SO0861 hypothetical protein YP_732855.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_732856.1 KEGG: son:SO0863 hypothetical protein YP_732857.1 PFAM: regulatory protein, LuxR; KEGG: son:SO0864 transcriptional regulator, LuxR family YP_732858.1 PFAM: Curlin associated repeat protein; KEGG: son:SO0865 hypothetical protein YP_732859.1 PFAM: Curlin associated repeat protein; KEGG: son:SO0866 minor curlin subunit CsgB, putative YP_732860.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; PKD domain containing protein; Proprotein convertase, P; KEGG: son:SO0867 serine protease, subtilase family YP_732861.1 KEGG: son:SO0868 hypothetical protein YP_732862.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_732863.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_732864.1 KEGG: son:SO0871 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_732865.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: son:SO0872 tRNA nucleotidyltransferase (CCA-adding enzyme) YP_732866.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: son:SO0873 glutamyl-tRNA synthetase domain protein YP_732867.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: son:SO0874 DnaK suppressor protein YP_732868.1 Regulatory factor involved in maltose metabolism YP_732869.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide YP_732870.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0877 acetyltransferase, GNAT family YP_732871.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: son:SO0878 phosphoribulokinase YP_732872.1 PFAM: protein of unknown function UPF0270; KEGG: son:SO0879 hypothetical protein YP_732873.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO0880 hypothetical protein YP_732874.1 KEGG: son:SO0881 hypothetical protein YP_732875.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: son:SO0882 oxidoreductase, GMC family YP_732876.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: son:SO0883 hypothetical protein YP_732877.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO0884 hypothetical protein YP_732878.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0885 ABC transporter, ATP-binding protein YP_732879.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO0886 hypothetical protein YP_732880.1 KEGG: vvu:VV21314 chromosome segregation ATPase YP_732881.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: son:SO0895 pirin family protein YP_732882.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA YP_732883.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO0899 glyoxalase family protein YP_732884.1 PFAM: aldo/keto reductase; KEGG: son:SO0900 oxidoreductase, aldo/keto reductase family YP_732885.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_732886.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_732887.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_732888.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm YP_732889.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. YP_732890.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_732891.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3360 transposase IS116/IS110/IS902 YP_732893.1 PFAM: beta-lactamase; KEGG: son:SO0914 hypothetical protein YP_732894.1 PFAM: Ankyrin; KEGG: son:SO0915 ankyrin domain protein YP_732895.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; KEGG: son:SO0916 putative acetyltransferase YP_732896.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog YP_732897.1 PFAM: peptidase S45, penicillin amidase; KEGG: son:SO0918 aculeacin A acylase YP_732898.1 PFAM: Amino acid transporter, transmembrane; KEGG: son:SO0919 serine transporter, putative YP_732899.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0920 acetyltransferase, GNAT family YP_732900.1 KEGG: son:SO0921 hypothetical protein YP_732901.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO0922 proton/glutamate symporter YP_732902.1 PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: son:SO0923 hypothetical protein YP_732903.1 KEGG: son:SO0924 hypothetical protein YP_732904.1 KEGG: son:SO0925 GGDEF domain protein YP_732905.1 KEGG: son:SO0926 acetyltransferase, GNAT family YP_732906.1 PFAM: EAL domain protein; phosphotransferase system, EIIC; KEGG: vch:VC1211 hypothetical protein YP_732907.1 KEGG: son:SO0927 hypothetical protein YP_732909.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_732910.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_732911.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate YP_732912.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_732913.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_732914.1 PFAM: protein of unknown function DUF481; KEGG: son:SO0934 hypothetical protein YP_732915.1 KEGG: son:SO0935 Na+/H+ antiporter YP_732916.1 PFAM: transcriptional regulator domain protein; KEGG: son:SO0936 transcriptional regulator YP_732917.1 KEGG: son:SO0937 hypothetical protein YP_732918.1 KEGG: son:SO0938 hypothetical protein YP_732919.1 KEGG: son:SO0939 cytochrome c, putative YP_732920.1 PFAM: transcriptional regulator domain protein; KEGG: son:SO0940 transcriptional regulator-related protein YP_732921.1 KEGG: son:SO0941 hypothetical protein YP_732922.1 KEGG: son:SO0942 hypothetical protein YP_732923.1 KEGG: son:SO0943 sensory box protein, putative; TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; SMART: PAS domain containing protein YP_732924.1 PFAM: Radical SAM domain protein; KEGG: son:SO0944 hypothetical protein YP_732925.1 PFAM: acriflavin resistance protein; KEGG: son:SO0945 AcrB/AcrD/AcrF family protein YP_732926.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO0946 hypothetical protein YP_732927.1 facilitates an early step in the assembly of the 50S subunit of the ribosome YP_732928.1 KEGG: sdn:Sden_3722 ATP-binding region, ATPase-like protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MHYT domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_732929.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: sdn:Sden_3723 response regulator receiver YP_732930.1 PFAM: methyltransferase small; KEGG: son:SO0948 hypothetical protein YP_732931.1 TIGRFAM: branched-chain amino acid transport system II carrier protein; PFAM: branched-chain amino acid transport system II carrier protein; KEGG: son:SO0949 branched-chain amino acid transport system II carrier protein BrnQ YP_732932.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO0950 integrase/recombinase XerD YP_732933.1 KEGG: son:SO0951 thiol:disulfide interchange protein DsbC YP_732934.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: son:SO0952 single-stranded-DNA-specific exonuclease RecJ YP_732935.1 KEGG: son:SO0953 hypothetical protein YP_732936.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0954 acetyltransferase, GNAT family YP_732937.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0956 alkyl hydroperoxide reductase, F subunit YP_732938.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO0958 alkyl hydroperoxide reductase, C subunit YP_732939.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: son:SO0959 cytosol aminopeptidase YP_732940.1 PFAM: Spermine synthase; KEGG: son:SO0960 hypothetical spermidine synthase YP_732941.1 KEGG: son:SO0961 hypothetical protein YP_732942.1 KEGG: son:SO0962 hypothetical protein YP_732943.1 PFAM: dienelactone hydrolase; KEGG: pha:PSHAa2188 hydrolase YP_732944.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO0968 D-lactate dehydrogenase YP_732945.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0970 fumarate reductase flavoprotein subunit precursor YP_732946.1 KEGG: son:SO0971 hypothetical protein YP_732947.1 PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0972 hypothetical protein YP_732948.1 KEGG: son:SO0973 hypothetical protein YP_732949.1 KEGG: son:SO0974 hypothetical protein YP_732950.1 KEGG: son:SO0975 hypothetical protein YP_732951.1 PFAM: OsmC family protein; KEGG: son:SO0976 organic hydroperoxide resistance protein YP_732952.1 PFAM: regulatory protein, MarR; KEGG: son:SO0977 transcriptional regulator, MarR family YP_732953.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO0978 glycerol-3-phosphate dehydrogenase YP_732954.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA YP_732955.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0981 sensor histidine kinase YP_732956.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pha:PSHAa0853 response regulator (activator) in two-component regulatory YP_732958.1 PFAM: MltA-interacting MipA family protein; KEGG: son:SO3592 putative outer membrane protein YP_732959.1 TIGRFAM: LPXTG-motif cell wall anchor domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: son:SO4539 serine protease, subtilase family YP_732960.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: son:SO0986 chromate transporter, putative YP_732961.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: son:SO0987 methyl-accepting chemotaxis protein YP_732962.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO0988 formate dehydrogenase, alpha subunit YP_732963.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: sdn:Sden_3128 peptide chain release factor 2 YP_732964.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_732965.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7 YP_732966.1 PFAM: Rhomboid family protein; KEGG: son:SO1000 rhomboid family protein YP_732967.1 KEGG: son:SO1002 hypothetical protein YP_732968.1 PFAM: MORN variant repeat protein; KEGG: son:SO1003 hypothetical protein YP_732969.1 KEGG: son:SO1004 hypothetical protein YP_732970.1 KEGG: son:SO1006 dienelactone hydrolase family protein; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: dienelactone hydrolase YP_732972.1 KEGG: noc:Noc_0407 hypothetical protein YP_732974.1 KEGG: pfl:PFL_1846 hypothetical protein YP_732975.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_732976.1 PFAM: Phosphoglycerate mutase; KEGG: son:SO1031 alpha-ribazole-5'-phosphate phosphatase, putative YP_732977.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1033 iron-compound ABC transporter, ATP-binding protein, putative YP_732978.1 PFAM: transport system permease protein; KEGG: son:SO1034 iron-compound ABC transporter, permease protein YP_732979.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_732980.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_732981.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: son:SO1037 cobinamide kinase/cobinamide phosphate guanylyltransferase YP_732982.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_732983.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_732984.1 KEGG: son:SO3711 hypothetical protein YP_732985.1 PFAM: periplasmic binding protein; KEGG: son:SO3709 ABC transporter, periplasmic substrate-binding protein, putative YP_732986.1 KEGG: son:SO3708 hypothetical protein YP_732987.1 KEGG: vvu:VV12513 hypothetical protein YP_732988.1 KEGG: son:SO3704 hypothetical protein YP_732989.1 PFAM: methylation site containing protein; KEGG: neu:NE1746 fimbrial protein pilin YP_732990.1 PFAM: methylation site containing protein; KEGG: psp:PSPPH_0726 type IV pilin, putative YP_732991.1 TIGRFAM: type IV pilus modification protein PilV; PFAM: methylation site containing protein; KEGG: csa:Csal_0486 methylation YP_732992.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: xft:PD0021 type IV pilus assembly protein PilW YP_732993.1 KEGG: sat:SYN_01756 hypothetical membrane protein YP_732994.1 KEGG: son:SO3699.1 hypothetical protein YP_732995.1 PFAM: protein of unknown function DUF1486; KEGG: son:SO3697 steroid delta-isomerase domain protein YP_732996.1 KEGG: son:SO3696 hypothetical protein YP_732997.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_732998.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO3694 HlyD family secretion protein YP_732999.1 KEGG: son:SO3693 hypothetical protein YP_733000.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3692 ABC transporter, ATP-binding protein YP_733001.1 PFAM: protein of unknown function DUF214; KEGG: sdn:Sden_2849 protein of unknown function DUF214 YP_733002.1 PFAM: protein of unknown function DUF214; KEGG: son:SO3690 ABC transporter, permease protein YP_733003.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: son:SO3689 sigma-54 dependent nitrogen response regulator YP_733004.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3688 nitrogen regulation protein NtrY, putative YP_733005.1 KEGG: son:SO3687 curli production assembly/transport component CsgE, putative YP_733006.1 KEGG: son:SO3686 curli production assembly/transport component CsgF, putative YP_733007.1 PFAM: Curli production assembly/transport component CsgG; KEGG: son:SO3685 curli production assembly/transport component CsgG, putative YP_733008.1 PFAM: regulatory protein, TetR; KEGG: son:SO3684 transcriptional regulator, TetR family YP_733009.1 PFAM: aldehyde dehydrogenase; KEGG: son:SO3683 coniferyl aldehyde dehydrogenase YP_733010.1 KEGG: son:SO3682 hypothetical protein YP_733011.1 PFAM: UspA domain protein; KEGG: son:SO3681 universal stress protein family YP_733012.1 PFAM: UspA domain protein; KEGG: son:SO3680 universal stress protein family YP_733013.1 KEGG: sdn:Sden_3307 extracellular solute-binding protein, family 3 YP_733014.1 PFAM: protein of unknown function DUF924; KEGG: ilo:IL1577 hypothetical protein YP_733015.1 KEGG: son:SO3679 hypothetical protein YP_733016.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO3678 hypothetical protein YP_733017.1 KEGG: son:SO3677 hypothetical protein YP_733018.1 KEGG: son:SO3676 hypothetical protein YP_733019.1 KEGG: son:SO3665 ABC transporter, ATP-binding/permease protein, putative; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_733020.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO3664 long-chain-fatty-acid--CoA ligase YP_733021.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dps:DP2240 probable methionine aminopeptidase, MAP YP_733022.1 KEGG: ilo:IL2066 hypothetical protein YP_733023.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sdn:Sden_2933 4Fe-4S ferredoxin, iron-sulfur binding YP_733024.1 KEGG: son:SO3660 sigma-54 dependent transcriptional regulator/sensory box protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AAA ATPase YP_733025.1 KEGG: son:SO3659 thiol:disulfide interchange protein, putative YP_733026.1 PFAM: peptidase S10, serine carboxypeptidase; KEGG: pcu:pc0501 hypothetical protein YP_733027.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO3657 transporter, LysE family YP_733028.1 KEGG: son:SO3656 hypothetical protein YP_733029.1 KEGG: cvi:CV1035 hypothetical protein YP_733030.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_733031.1 PFAM: Polyprenyl synthetase; KEGG: son:SO3653 octaprenyl-diphosphate synthase YP_733032.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: son:SO3652 ribosomal protein L21 YP_733033.1 involved in the peptidyltransferase reaction during translation YP_733034.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_733035.1 PFAM: protein of unknown function DUF1212; KEGG: son:SO3648 hypothetical protein YP_733036.1 KEGG: son:SO3647 hypothetical protein YP_733037.1 PFAM: dihydrofolate reductase region; KEGG: son:SO3646 dihydrofolate reductase YP_733038.1 KEGG: son:SO3645 hypothetical protein YP_733039.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3642 methyl-accepting chemotaxis protein YP_733040.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_733041.1 protein associated with Co2+ and Mg2+ efflux YP_733042.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_733043.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_733044.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO3637 survival protein surA YP_733045.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: son:SO3636 organic solvent tolerance protein YP_733046.1 PFAM: aminoglycoside phosphotransferase; KEGG: son:SO3635 hypothetical phosphotransferase YP_733047.1 PFAM: Nucleotidyl transferase; KEGG: son:SO3634 nucleotidyltransferase family protein YP_733048.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system YP_733049.1 KEGG: son:SO3632 hypothetical protein YP_733050.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO3631 glycerate dehydrogenase YP_733051.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3360 transposase IS116/IS110/IS902 YP_733052.1 KEGG: bcz:BCZK4404 hypothetical protein YP_733053.1 PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_04311 outer membrane protein and related peptidoglycan-associated (LipO)protein YP_733054.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sdn:Sden_0685 pseudouridine synthase, Rsu YP_733055.1 KEGG: son:SO1086 hypothetical protein YP_733056.1 PFAM: Na+/H+ antiporter NhaC; KEGG: son:SO1087 Na+/H+ antiporter family protein YP_733057.1 KEGG: tbd:Tbd_0710 hypothetical protein YP_733058.1 PFAM: FMN-binding domain protein; KEGG: tbd:Tbd_0709 putative signal peptide protein YP_733059.1 KEGG: son:SO1090 ApbE family protein, putative YP_733060.1 KEGG: tcx:Tcr_0415 hypothetical protein YP_733061.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ilo:IL2343 methyl-accepting chemotaxis protein (contains HAMP domain) YP_733062.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1091 hypothetical protein YP_733063.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: son:SO1092 transcriptional regulator, AraC/XylS family YP_733064.1 KEGG: son:SO1094 hypothetical transcription elongation factor YP_733065.1 KEGG: son:SO1095 O-acetylhomoserine (thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_733066.1 KEGG: son:SO1096 hypothetical protein YP_733067.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO1097 putative ribosomal RNA small subunit methyltransferase D YP_733068.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: son:SO1098 hypothetical alkylated DNA repair protein YP_733069.1 PFAM: BolA family protein; KEGG: son:SO1099 bolA protein YP_733070.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: son:SO1100 extracellular solute-binding protein, family 7 YP_733071.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_733072.1 PFAM: TonB-dependent receptor; KEGG: son:SO1102 TonB-dependent receptor C-terminal region domain lipoprotein YP_733073.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_733074.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_733075.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_733076.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm YP_733077.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. YP_733078.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_733079.1 PFAM: ApbE family lipoprotein; KEGG: son:SO1109 thiamin biosynthesis lipoprotein ApbE YP_733080.1 PFAM: protein of unknown function DUF539; KEGG: son:SO1110 hypothetical protein YP_733081.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: son:SO1111 bacterioferritin subunit 2 YP_733082.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: son:SO1112 bacterioferritin subunit 1 YP_733083.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO1112.1 hypothetical chemotactic transducer YP_733084.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_733085.1 KEGG: son:SO1115 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_733086.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: son:SO1117 cytosol aminopeptidase, putative YP_733087.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ilo:IL1581 outer membrane receptor for ferric siderophore YP_733088.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO1120 xanthine/uracil permease family protein YP_733089.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_733090.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_733091.1 KEGG: son:SO1123 hypothetical protein YP_733092.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: son:SO1124 conserved hypothetical protein TIGR00011 YP_733093.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1125 integral membrane domain protein YP_733094.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_733095.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_733097.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1136 ATP-dependent RNA helicase, DEAD box family YP_733098.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bpm:BURPS1710b_2160 ribosomal-protein-serine acetyltransferase YP_733099.1 PFAM: peptidase M48, Ste24p; KEGG: son:SO1137 hypothetical protein YP_733100.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1139 peptidyl-prolyl cis-trans isomerase FklB YP_733101.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_733102.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_733103.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_733104.1 SMART: extracellular solute-binding protein, family 3; KEGG: son:SO1143 hypothetical protein YP_733105.1 PFAM: chemotaxis sensory transducer; KEGG: son:SO1144 methyl-accepting chemotaxis protein YP_733106.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: son:SO1148 hypothetical protein YP_733107.1 KEGG: sdn:Sden_0966 hypothetical protein YP_733108.1 PFAM: protein of unknown function DUF692; KEGG: sdn:Sden_0967 protein of unknown function DUF692 YP_733109.1 KEGG: sdn:Sden_0968 putative lipoprotein YP_733110.1 SMART: PUA domain containing protein; KEGG: son:SO1149 hypothetical SAM-dependent methyltransferase YP_733111.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_733112.1 PFAM: protein of unknown function DUF808; KEGG: son:SO1151 hypothetical protein YP_733113.1 PFAM: 3'-5' exonuclease; KEGG: son:SO1153 exonuclease, putative YP_733114.1 KEGG: son:SO1154 hypothetical protein YP_733115.1 KEGG: son:SO1155 hypothetical protein YP_733116.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1156 TonB-dependent receptor YP_733117.1 KEGG: son:SO1157 hypothetical protein YP_733118.1 PFAM: Ferritin, Dps family protein; KEGG: son:SO1158 Dps family protein YP_733119.1 KEGG: son:SO1159 hypothetical protein YP_733120.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1160 ribosomal-protein-alanine acetyltransferase YP_733121.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_733122.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_733123.1 PFAM: protein of unknown function DUF493; KEGG: son:SO1163 hypothetical protein YP_733124.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: son:SO1164 D-alanyl-D-alanine carboxypeptidase YP_733125.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: son:SO1165 rare lipoprotein A YP_733126.1 TIGRFAM: lytic murein transglycosylase B; KEGG: son:SO1166 membrane-bound lytic transglycosylase, putative YP_733127.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: son:SO1167 rod shape-determining protein RodA YP_733128.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: son:SO1168 penicillin-binding protein 2 YP_733129.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_733130.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: son:SO1170 iojap domain protein YP_733131.1 KEGG: son:SO1171 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_733132.1 KEGG: son:SO1172 DNA polymerase III delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta YP_733133.1 PFAM: Rare lipoprotein B; KEGG: son:SO1173 rare lipoprotein B YP_733134.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_733135.1 PFAM: protein of unknown function DUF1451; KEGG: son:SO1175 hypothetical protein YP_733136.1 PFAM: methylation site containing protein; KEGG: son:SO1176 hypothetical protein YP_733137.1 Transfers the fatty acyl group on membrane lipoproteins YP_733138.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: son:SO1178 magnesium and cobalt efflux protein CorC YP_733139.1 PFAM: protein of unknown function UPF0054; KEGG: son:SO1179 conserved hypothetical protein TIGR00043 YP_733140.1 PFAM: PhoH family protein; KEGG: son:SO1180 PhoH family protein YP_733141.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_733142.1 KEGG: son:SO1182 hypothetical protein YP_733143.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO1183 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_733144.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_733145.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_733146.1 KEGG: son:SO1187 hypothetical protein YP_733147.1 KEGG: son:SO1188 hypothetical protein YP_733148.1 KEGG: son:SO1189 lysozyme YP_733149.1 KEGG: son:SO1190 hypothetical protein YP_733150.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO1191 transcription elongation factor GreA YP_733151.1 KEGG: son:SO1192 hypothetical protein YP_733152.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_733153.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_733154.1 PFAM: protein of unknown function UPF0044; KEGG: son:SO1195 putative RNA-binding protein containing KH domain YP_733155.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit YP_733156.1 KEGG: son:SO1197 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_733157.1 KEGG: son:SO1198 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS YP_733158.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_733159.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_733160.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: son:SO1201 preprotein translocase, SecG subunit YP_733161.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_733162.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_733163.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_733164.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_733165.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_733166.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_733167.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1208 GGDEF domain protein YP_733168.1 KEGG: son:SO1209 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein YP_733169.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing YP_733170.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_733171.1 PFAM: TatD-related deoxyribonuclease; KEGG: son:SO1213 hydrolase, TatD family YP_733172.1 TIGRFAM: nucleoside transporter; PFAM: Na dependent nucleoside transporter; nucleoside recognition domain protein; Na dependent nucleoside transporter domain protein; KEGG: son:SO1214 NupC family protein YP_733173.1 PFAM: nucleoside-specific channel-forming protein, Tsx; KEGG: son:SO1215 outer membrane protein OmpK, putative YP_733174.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_733175.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_733176.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_733177.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_733178.1 KEGG: son:SO1222 membrane protein YP_733179.1 KEGG: son:SO1223 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase YP_733180.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO1224 hypothetical protein YP_733181.1 PFAM: type IV pilus assembly PilZ; KEGG: son:SO1225 hypothetical protein YP_733182.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_733183.1 PFAM: type IV pilus assembly PilZ; KEGG: son:SO1227 hypothetical protein YP_733184.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes YP_733185.1 periplasmic sensory protein associated with the TorRS two-component regulatory system YP_733186.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: son:SO1230 sensor histidine kinase/response regulator TorS YP_733187.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor YP_733188.1 TIGRFAM: Twin-arginine translocation pathway signal; trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: son:SO1232 trimethylamine-N-oxide reductase YP_733189.1 TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO1233 tetraheme cytochrome c YP_733190.1 PFAM: periplasmic nitrate reductase NapE; KEGG: son:SO1234 warning TorE protein YP_733191.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO1236 xanthine/uracil permease family protein YP_733192.1 PFAM: CBS domain containing protein; KEGG: son:SO1237 acetoin utilization protein AcuB, putative YP_733193.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO1238 acyltransferase family protein YP_733194.1 PFAM: metallophosphoesterase; KEGG: son:SO1239 hypothetical protein YP_733195.1 PFAM: nucleoside recognition domain protein; KEGG: son:SO1245 hypothetical protein YP_733196.1 KEGG: son:SO1247 hypothetical protein YP_733197.1 PFAM: peptidase U32; KEGG: son:SO1248 hypothetical peptidase YP_733198.1 PFAM: peptidase U32; KEGG: son:SO1249 peptidase, U32 family YP_733199.1 PFAM: Sterol-binding domain protein; KEGG: son:SO1250 hypothetical protein YP_733200.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1251 ferredoxin, 4Fe-4S YP_733201.1 PFAM: peptidase U32; KEGG: son:SO1252 peptidase, U32 family YP_733202.1 KEGG: son:SO1254 hypothetical protein YP_733203.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO1255 cyclic nucleotide phosphodiesterase, putative YP_733204.1 PFAM: thioesterase superfamily protein; KEGG: son:SO1256 hypothetical 4-hydroxybenzoyl-CoA thioesterase YP_733205.1 PFAM: adenylosuccinate synthetase; KEGG: son:SO1258 adenylosuccinate synthetase, putative YP_733206.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1259 transcriptional regulator, LysR family YP_733207.1 SMART: extracellular solute-binding protein, family 3; KEGG: son:SO1260 hypothetical amino acid ABC transporter YP_733208.1 PFAM: OsmC family protein; KEGG: son:SO3495 hypothetical protein YP_733209.1 PFAM: regulatory protein, TetR; KEGG: son:SO3494 transcriptional regulator, TetR family YP_733210.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3493 RND multidrug efflux membrane fusion protein MexE YP_733211.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO3492 RND multidrug efflux transporter MexF YP_733212.1 KEGG: son:SO3491 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_733213.1 KEGG: sdn:Sden_0376 hypothetical protein YP_733214.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: sdn:Sden_0375 GGDEF domain YP_733215.1 KEGG: sdn:Sden_0374 hypothetical protein YP_733216.1 PFAM: globin; KEGG: sdn:Sden_0373 globin YP_733217.1 PFAM: protein of unknown function DUF88; KEGG: son:SO3490 hypothetical protein YP_733218.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO3488 transcriptional regulator, AraC/XylS family YP_733219.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3485 drug resistance transporter, Bcr/CflA family protein YP_733220.1 PFAM: acriflavin resistance protein; KEGG: son:SO3484 AcrB/AcrD/AcrF family protein YP_733221.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3483 HlyD family secretion protein YP_733222.1 KEGG: son:SO3481 hypothetical protein YP_733223.1 PFAM: metallophosphoesterase; SMART: serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; KEGG: son:SO3480 hypothetical protein phosphatase YP_733224.1 KEGG: sdn:Sden_2716 type IV pilin biogenesis protein, putative YP_733225.1 KEGG: son:SO3476 hypothetical protein YP_733226.1 KEGG: son:SO3475 putative protein-disulfide isomerase YP_733227.1 PFAM: beta-lactamase domain protein; KEGG: son:SO3474 metallo-beta-lactamase family protein YP_733228.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3473 transcriptional regulator, LysR family YP_733229.1 PFAM: conserved hypothetical protein 341; KEGG: rpd:RPD_2005 conserved hypothetical protein 341 YP_733230.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_733231.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_733232.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone domain protein; KEGG: son:SO3470 ATP-cone domain protein YP_733233.1 KEGG: son:SO3469 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein YP_733234.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_733235.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: son:SO3467 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative YP_733236.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_733237.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_733238.1 KEGG: son:SO3464 thiamin-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein YP_733239.1 PFAM: phosphatidylglycerophosphatase A; KEGG: son:SO3463 phosphatidylglycerophosphatase A YP_733240.1 PFAM: UspA domain protein; KEGG: ilo:IL1305 UspA-related nucleotide-binding protein YP_733241.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: son:SO3462 DNA repair protein RecN YP_733242.1 PFAM: Auxin Efflux Carrier; KEGG: son:SO3461 transporter, putative YP_733243.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3460 transcriptional regulator, LysR family YP_733244.1 KEGG: son:SO3459 hypothetical protein YP_733245.1 PFAM: protein of unknown function DUF416; KEGG: son:SO3458 hypothetical protein YP_733246.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system YP_733247.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_733248.1 KEGG: son:SO3455 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein YP_733250.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_733251.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_733252.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_733253.1 PFAM: Septum formation initiator; KEGG: son:SO3439 cell division protein FtsB YP_733254.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_733255.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_733256.1 PFAM: tRNA pseudouridine synthase D, TruD; KEGG: son:SO3436 tRNA pseudouridine synthase D YP_733257.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_733258.1 KEGG: son:SO3434 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_733259.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: son:SO3433 lipoprotein NlpD YP_733260.1 TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: son:SO3432 RNA polymerase sigma-38 factor YP_733261.1 This protein performs the mismatch recognition step during the DNA repair process YP_733262.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_733263.1 PFAM: regulatory protein RecX; KEGG: son:SO3429 regulatory protein RecX YP_733264.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_733265.1 KEGG: son:SO3427 aspartokinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_733266.1 affects carbohydrate metabolism; has regulatory role in many processes YP_733267.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_733268.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: son:SO3423 DNA polymerase III, chi subunit YP_733269.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3422 ribosomal subunit interface protein YP_733270.1 PFAM: cytochrome B561; KEGG: son:SO3421 b-type cytochrome, putative YP_733271.1 PFAM: cytochrome c, class II; KEGG: son:SO3420 cytochrome c' YP_733272.1 TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: son:SO3419 trp operon repressor YP_733273.1 KEGG: son:SO3418 hypothetical protein YP_733274.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3417 peptidyl-prolyl cis-trans isomerase SlyD YP_733275.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_733276.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_733277.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_733279.1 PFAM: extracellular solute-binding protein, family 3; KEGG: son:SO3412 extracellular solute-binding proteins, family 3 protein YP_733280.1 PFAM: peptidase S41; WD40 domain protein beta Propeller; SMART: PDZ/DHR/GLGF domain protein; KEGG: son:SO3411 protease, putative YP_733281.1 KEGG: son:SO3410 hypothetical protein YP_733282.1 PFAM: OsmC family protein; KEGG: son:SO3409 OsmC/Ohr family protein YP_733283.1 KEGG: son:SO3408 hypothetical protein YP_733284.1 PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO3407 hypothetical protein YP_733285.1 KEGG: son:SO3406 hypothetical protein YP_733286.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: son:SO3404 methyl-accepting chemotaxis protein YP_733287.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein YP_733288.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: sdn:Sden_3055 response regulator receiver YP_733289.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sdn:Sden_3054 histidine kinase, dimerisation and phosphoacceptor region YP_733290.1 PFAM: isochorismatase hydrolase; KEGG: pfl:PFL_2630 isochorismatase family protein YP_733291.1 PFAM: protein of unknown function DUF28; KEGG: son:SO3401 hypothetical protein YP_733292.1 PFAM: chemotaxis sensory transducer; KEGG: cps:CPS_4961 methyl-accepting chemotaxis protein YP_733293.1 KEGG: son:SO3395 hypothetical protein YP_733294.1 PFAM: regulatory protein, TetR; KEGG: son:SO3393 transcriptional regulator, TetR family YP_733295.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: son:SO3392 oxidoreductase, FMN-binding YP_733296.1 KEGG: son:SO3391 ATP-dependent protease, putative YP_733297.1 KEGG: son:SO3389 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_733298.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO3388 ATP-dependent RNA helicase, DEAD box family YP_733299.1 KEGG: son:SO3387 hypothetical protein YP_733300.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: son:SO3386 hypothetical protein YP_733301.1 PFAM: regulatory protein, MerR; KEGG: son:SO3385 transcriptional regulator, MerR family YP_733302.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: son:SO3384 deoxyribodipyrimidine photolyase YP_733303.1 KEGG: son:SO3383 transcriptional regulator-related protein YP_733304.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO3382 oxidoreductase, short-chain dehydrogenase/reductase family YP_733305.1 PFAM: amine oxidase; KEGG: son:SO3381 hypothetical protein YP_733306.1 PFAM: protein of unknown function DUF1365; KEGG: son:SO3380 hypothetical protein YP_733307.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO3379 cyclopropane-fatty-acyl-phospholipid synthase YP_733308.1 KEGG: son:SO3378 hypothetical protein YP_733309.1 KEGG: son:SO3377 hypothetical protein YP_733310.1 KEGG: son:SO3376 hypothetical protein YP_733311.1 KEGG: son:SO3374.1 hypothetical protein YP_733312.1 KEGG: son:SO3374 hypothetical protein YP_733314.1 PFAM: cytochrome B561; KEGG: son:SO3371 hypothetical cytochrome B561 YP_733315.1 PFAM: YceI family protein; KEGG: son:SO3370 hypothetical protein YP_733316.1 PFAM: Fe(II) trafficking protein YggX; KEGG: son:SO3369 hypothetical protein YP_733317.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: son:SO3368 A/G-specific adenine glycosylase YP_733318.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_733319.1 PFAM: protein of unknown function DUF469; KEGG: son:SO3366 hypothetical protein YP_733320.1 catalyzes the formation of glutamate from glutamine YP_733321.1 KEGG: son:SO3364 hypothetical protein YP_733322.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3363 transcriptional regulator, LysR family YP_733323.1 PFAM: protein of unknown function DUF885; KEGG: son:SO3361 hypothetical protein YP_733324.1 KEGG: son:SO3359 oxygen-independent coproporphyrinogen III oxidase, putative; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_733325.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_733326.1 KEGG: son:SO3357 hypothetical protein YP_733327.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF167; KEGG: son:SO3356 hypothetical protein YP_733328.1 PFAM: protein of unknown function YGGT; KEGG: son:SO3355 hypothetical protein YP_733329.1 KEGG: son:SO3354 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_733330.1 TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase domain protein; KEGG: son:SO3352 conserved hypothetical protein TIGR00044 YP_733331.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: son:SO3351 twitching motility protein PilT YP_733332.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: son:SO3350 twitching motility protein PilU YP_733333.1 PFAM: glutathione peroxidase; KEGG: son:SO3349 glutathione peroxidase, putative YP_733334.1 KEGG: son:SO3348 ferrochelatase; TIGRFAM: ferrochelatase; PFAM: ferrochelatase YP_733335.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_733336.1 PFAM: protein of unknown function DUF179; KEGG: son:SO3346 putative transcriptional regulator YP_733337.1 involved in start site selection during the initiation of translation YP_733338.1 KEGG: son:SO3344 hypothetical protein YP_733339.1 KEGG: son:SO3343 hypothetical protein YP_733340.1 PFAM: protein of unknown function UPF0126; KEGG: son:SO3342 hypothetical protein YP_733341.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO3341 antioxidant, AhpC/TSA family YP_733342.1 PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO3340 hypothetical small-conductance mechanosensitive channel YP_733343.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO3339 OmpA family protein YP_733344.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO3338 L-allo-threonine aldolase YP_733345.1 PFAM: KDPG and KHG aldolase; KEGG: son:SO3337 hypothetical protein YP_733346.1 KEGG: son:SO3336 hypothetical protein YP_733347.1 PFAM: protein of unknown function DUF980; KEGG: son:SO3335 hypothetical protein YP_733348.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3334 GGDEF family protein YP_733349.1 PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO3333 transporter, putative YP_733350.1 KEGG: son:SO3332 transcriptional regulator, CopG family YP_733351.1 KEGG: son:SO3331 hypothetical protein YP_733352.1 KEGG: son:SO3328 acetyltransferase, GNAT family YP_733353.1 KEGG: son:SO3326 hypothetical protein YP_733354.1 KEGG: son:SO3325 NrfJ-related protein YP_733355.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3324 acetyltransferase, GNAT family YP_733356.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3323 acetyltransferase, GNAT family YP_733357.1 PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: vpa:VPA0042 hypothetical protein YP_733358.1 PFAM: DoxX family protein; KEGG: son:SO3319 hypothetical protein YP_733359.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3318 transcriptional regulator, LysR family YP_733360.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: son:SO3317 5'-nucleotidase, putative YP_733361.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: son:SO3316 hypothetical protein YP_733362.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_733363.1 KEGG: son:SO3314 fimbrial biogenesis and twitching motility protein, putative; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_733364.1 KEGG: son:SO3313 hypothetical protein YP_733365.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_733366.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_733367.1 KEGG: son:SO3310 hypothetical protein YP_733368.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis YP_733369.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_733370.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_733371.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_733372.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_733373.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: son:SO3291 cytidine/deoxycytidylate deaminase family protein YP_733374.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function YP_733375.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_733376.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: son:SO3286 cytochrome bd-I oxidase subunit I YP_733377.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: son:SO3285 cytochrome bd-I oxidase subunit II YP_733378.1 TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: sdn:Sden_1276 Cyd operon protein YbgT YP_733379.1 KEGG: bpm:BURPS1710b_2605 serine/arginine repetitive matrix 1 YP_733380.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3282 methyl-accepting chemotaxis protein YP_733381.1 PFAM: protein of unknown function DUF465; KEGG: son:SO3280 hypothetical protein YP_733382.1 PFAM: acriflavin resistance protein; KEGG: son:SO3279 AcrB/AcrD/AcrF family protein YP_733383.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3278 hypothetical protein YP_733384.1 PFAM: regulatory protein, TetR; KEGG: son:SO3277 transcriptional regulator, TetR family YP_733385.1 KEGG: son:SO3276 hypothetical protein YP_733386.1 KEGG: son:SO3275 hypothetical protein YP_733387.1 KEGG: son:SO3274 hypothetical protein YP_733388.1 KEGG: son:SO3258 hypothetical protein YP_733389.1 KEGG: son:SO3257 hypothetical protein YP_733390.1 PFAM: protein of unknown function DUF400; KEGG: son:SO3256 hypothetical protein YP_733391.1 PFAM: FlgN family protein; KEGG: son:SO3255 flagellar biosynthetic protein FlgN YP_733392.1 PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: son:SO3254 negative regulator of flagellin synthesis FlgM YP_733393.1 required for the assembly of the flagellar basal body P-ring YP_733394.1 PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO3252 chemotaxis protein CheV YP_733395.1 PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 12; KEGG: son:SO3251 chemotaxis protein methyltransferase CheR YP_733396.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_733397.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_733398.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production YP_733399.1 the hook connects flagellar basal body to the flagellar filament YP_733400.2 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod YP_733401.1 makes up the distal portion of the flagellar basal body rod YP_733402.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod YP_733403.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_733404.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space YP_733405.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sdn:Sden_1312 flagellar hook-associated protein YP_733406.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes. YP_733407.1 PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: pae:PA1092 flagellin type B YP_733408.1 KEGG: ypm:YP1857 transposase YP_733409.1 PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: pae:PA1092 flagellin type B YP_733410.1 PFAM: flagellar protein FlaG protein; KEGG: son:SO3236 flagellin FlaG YP_733411.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: son:SO3235 flagellar hook-associated protein FliD YP_733412.1 KEGG: son:SO3234 hypothetical protein YP_733413.1 flagellin specific chaperone YP_733414.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: son:SO3232 flagellar regulatory protein A YP_733415.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: son:SO3231 flagellar regulatory protein B YP_733416.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: son:SO3230 flagellar regulatory protein C YP_733417.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: son:SO3229 flagellar hook-basal body complex protein FliE YP_733418.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_733419.1 One of three proteins involved in switching the direction of the flagellar rotation YP_733420.1 binds to and inhibits the function of flagella specific ATPase FliI YP_733421.1 involved in type III protein export during flagellum assembly YP_733422.1 TIGRFAM: flagellar export protein FliJ; KEGG: son:SO3224 flagellar protein FliJ YP_733423.1 PFAM: flagellar hook-length control protein; KEGG: son:SO3223 flagellar hook-length control protein FliK YP_733424.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring YP_733425.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_733426.1 One of three proteins involved in switching the direction of the flagellar rotation YP_733427.1 PFAM: flagellar biosynthesis protein, FliO; KEGG: son:SO3219 flagellar protein FliO YP_733428.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_733429.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: son:SO3217 flagellar biosynthetic protein FliQ YP_733430.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_733431.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_733432.1 membrane protein involved in the flagellar export apparatus YP_733433.1 positive regulator of class III flagellar genes YP_733434.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3211 flagellar biosynthetic protein FlhG YP_733435.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes YP_733436.1 PFAM: response regulator receiver; KEGG: son:SO3209 chemotaxis protein CheY YP_733437.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: son:SO3208 chemotaxis protein CheZ YP_733438.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: son:SO3207 chemotaxis protein YP_733439.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_733440.1 KEGG: son:SO3205 hypothetical protein YP_733441.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3204 ParA family protein YP_733442.1 PFAM: CheW domain protein; KEGG: son:SO3203 CheW domain protein YP_733443.1 PFAM: CheW domain protein; KEGG: son:SO3202 purine-binding chemotaxis protein CheW YP_733444.1 KEGG: son:SO3200 hypothetical protein YP_733445.1 KEGG: son:SO3199 FlhB domain protein YP_733446.1 KEGG: son:SO3198 hypothetical protein YP_733447.1 PFAM: VacJ family lipoprotein; KEGG: son:SO3197 vacJ lipoprotein, putative YP_733448.1 PFAM: response regulator receiver; KEGG: son:SO3196 response regulator YP_733449.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: sdn:Sden_1357 amino acid/peptide transporter YP_733450.1 KEGG: son:SO3194 transcriptional activator rfaH, putative; TIGRFAM: transcriptional activator RfaH; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein YP_733451.1 PFAM: polysaccharide export protein; KEGG: son:SO3193 polysaccharide biosynthesis protein YP_733452.1 crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown YP_733453.1 PFAM: lipopolysaccharide biosynthesis; KEGG: son:SO3191 chain length determinant protein YP_733454.1 NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose YP_733455.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: son:SO3186 glucose-1-phosphate-thymidylyltransferase YP_733456.1 PFAM: polysaccharide biosynthesis protein; KEGG: bth:BT1717 putative lipopolysaccharide biosynthesis protein YP_733457.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rme:Rmet_5236 DegT/DnrJ/EryC1/StrS aminotransferase YP_733458.1 KEGG: vch:VC0252 acetyltransferase RfbO, CysE/LacA/LpxA/NodL family YP_733459.1 KEGG: gsu:GSU3022 hypothetical protein YP_733460.1 KEGG: bld:BLi03688 YveQ YP_733461.1 PFAM: glycosyl transferase, family 2; KEGG: oih:OB2925 teichuronic acid biosynthesis YP_733462.1 KEGG: mst:Msp_0055 predicted glycosyltransferase YP_733463.1 PFAM: glycosyl transferase, group 1; KEGG: rsp:RSP_4207 glycosyl transferase, group 1 YP_733464.1 KEGG: vvy:VV0352 mannose-1-phosphate guanylyltransferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein YP_733465.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: stt:t0790 phosphomannomutase YP_733466.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: vpa:VP0236 nucleotide sugar dehydrogenase YP_733467.1 TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: ppr:PBPRA2673 hypothetical undecaprenylphosphateN-acetylglucosamine 1-phosphate transferase YP_733468.1 TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: cps:CPS_2091 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase YP_733469.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: hit:NTHI1664 predicted phosphomannomutase YP_733470.1 PFAM: protein of unknown function DUF886; KEGG: son:SO3164 hypothetical protein YP_733471.1 PFAM: copper resistance lipoprotein NlpE; KEGG: son:SO3163 lipoprotein YP_733472.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3162 sensor histidine kinase YP_733473.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: eba:ebA2277 glucose-1-phosphate thymidylyltransferase YP_733474.1 KEGG: son:SO3160 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_733475.1 PFAM: protein of unknown function DUF940, membrane lipoprotein putative; KEGG: son:SO3159 hypothetical protein YP_733476.1 PFAM: protein of unknown function DUF1017; KEGG: son:SO3158 polysaccharide synthesis-related protein YP_733477.1 KEGG: son:SO3157 lipoprotein, putative YP_733478.1 KEGG: son:SO3156.1 hypothetical protein YP_733479.1 PFAM: Patatin; KEGG: son:SO3155 hypothetical protein YP_733480.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_733481.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO3152 acetyltransferase, CysE/LacA/LpxA/NodL family YP_733482.1 PFAM: protein of unknown function UPF0066; KEGG: son:SO3151 hypothetical protein YP_733483.1 KEGG: son:SO3150 lipoprotein, putative YP_733484.1 KEGG: son:SO3149 hypothetical protein YP_733485.1 PFAM: amidohydrolase; KEGG: ilo:IL1717 secreted enzyme, contains two amidohydrolase related domains YP_733486.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: son:SO3146 DNA-binding protein, H-NS family YP_733487.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: son:SO3145 electron transfer flavoprotein, beta subunit YP_733488.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: son:SO3144 electron transfer flavoprotein, alpha subunit YP_733489.1 PFAM: Na+/H+ antiporter NhaC; KEGG: sdn:Sden_2537 Na+/H+ antiporter NhaC YP_733490.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO3142 peptidyl-dipeptidase Dcp YP_733491.1 KEGG: son:SO3140.2 hypothetical protein YP_733492.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_733493.1 KEGG: sdn:Sden_3098 hypothetical protein YP_733494.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3138 C4-dicarboxylate transport transcriptional regulatory protein YP_733495.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3136.1 hypothetical two-component sensor histidine kinase protein YP_733496.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO3136 C4-dicarboxylate transport protein YP_733497.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: son:SO3135 C4-dicarboxylate transporter, putative YP_733498.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: son:SO3134 C4-dicarboxylate-binding periplasmic protein YP_733499.1 KEGG: son:SO3132 hypothetical protein YP_733500.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_733501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3128 ABC transporter, ATP-binding/permease protein, putative YP_733502.1 PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: son:SO3127 Ada regulatory protein, putative YP_733503.1 KEGG: son:SO3126 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase YP_733504.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO3125 ATP-dependent RNA helicase, DEAD box family YP_733505.1 PFAM: Dual specificity protein phosphatase; KEGG: son:SO3124 tyrosine-specific protein phosphatase, putative YP_733506.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: vvy:VV1159 hypothetical protein YP_733507.1 PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO3123 chemotaxis protein CheV YP_733508.1 involved in the import of serine and threonine coupled with the import of sodium YP_733509.1 KEGG: son:SO3121 hypothetical protein YP_733510.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase domain protein; KEGG: son:SO3120 oxidoreductase, Gfo/Idh/MocA family YP_733511.1 KEGG: son:SO3119 hypothetical protein YP_733512.1 PFAM: pseudouridine synthase; KEGG: sdn:Sden_2524 pseudouridylate synthase YP_733513.1 PFAM: Redoxin domain protein; KEGG: son:SO3117 thioredoxin, putative YP_733514.1 KEGG: son:SO3116 hypothetical protein YP_733515.1 KEGG: son:SO3115 hypothetical protein YP_733516.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_733517.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_733518.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_733519.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_733520.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_733521.1 KEGG: son:SO3109 hypothetical protein YP_733522.1 PFAM: Rhodanese domain protein; KEGG: sdn:Sden_1406 rhodanese-like protein YP_733523.1 TIGRFAM: siroheme synthase; KEGG: son:SO3108 precorrin-2 oxidase / ferrochelatase YP_733524.1 PFAM: YaeQ family protein; KEGG: son:SO3107 hypothetical protein YP_733525.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: son:SO3106 cold-active serine alkaline protease YP_733526.1 PFAM: Rhodanese domain protein; KEGG: son:SO3105 phage shock protein E YP_733527.1 KEGG: son:SO3104 hypothetical protein YP_733528.1 PFAM: acriflavin resistance protein; KEGG: son:SO3103 AcrB/AcrD/AcrF family protein YP_733529.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3102 AcrA/AcrE family protein YP_733530.1 PFAM: protein of unknown function DUF541; KEGG: son:SO3101 hypothetical protein YP_733531.1 KEGG: son:SO3100 hypothetical protein YP_733532.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO3099 long-chain fatty acid transport protein, putative YP_733533.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: sdn:Sden_1520 sodium/proline symporter YP_733534.1 KEGG: son:SO3097 hypothetical protein YP_733535.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_733536.1 KEGG: son:SO3095 hypothetical protein YP_733537.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: von Willebrand factor, type A; Tetratricopeptide domain protein; KEGG: son:SO3094 TPR domain protein YP_733538.1 PFAM: von Willebrand factor, type A; KEGG: son:SO3093 von Willebrand factor type A domain protein YP_733539.1 KEGG: son:SO3092 hypothetical protein YP_733540.1 PFAM: protein of unknown function DUF58; KEGG: son:SO3091 hypothetical protein YP_733541.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: son:SO3090 MoxR domain protein YP_733542.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth YP_733543.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate YP_733544.1 KEGG: son:SO3087 hypothetical protein YP_733545.1 KEGG: son:SO3085 hypothetical protein YP_733546.1 KEGG: son:SO3084 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_733547.1 PFAM: peptidase M16 domain protein; KEGG: son:SO3083 peptidase, M16 family YP_733548.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: son:SO3082 phosphohistidine phosphatase SixA YP_733549.1 PFAM: Smr protein/MutS2; KEGG: son:SO3081 Smr domain protein YP_733550.1 involved in methylation of ribosomal protein L3 YP_733551.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_733552.1 PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: son:SO3078 major facilitator family protein, putative YP_733553.1 PFAM: ATP-NAD/AcoX kinase; KEGG: son:SO3077 hypothetical protein YP_733554.1 KEGG: son:SO3076 hypothetical protein YP_733555.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO3075 RNA methyltransferase, TrmH family, putative YP_733556.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO3073 hypothetical protein YP_733557.1 PFAM: beta-ketoacyl synthase; KEGG: son:SO3072 3-oxoacyl-(acyl-carrier-protein) synthase I YP_733558.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO3071 erythronate-4-phosphate dehydrogenase YP_733559.1 KEGG: son:SO3070 aspartate semialdehyde dehydrogenese; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region YP_733560.1 KEGG: son:SO3069 putative membrane protein YP_733561.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_733562.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO3067 FolC bifunctional protein YP_733563.1 PFAM: Sporulation domain protein; KEGG: son:SO3066 DedD protein YP_733564.1 PFAM: Colicin V production protein; KEGG: son:SO3065 colicin V production protein YP_733565.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_733566.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO3063 sodium:alanine symporter family protein YP_733567.1 KEGG: son:SO3062 hypothetical protein YP_733568.1 decatenates replicating daughter chromosomes YP_733569.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO3055 proline iminopeptidase YP_733570.1 PFAM: beta-lactamase domain protein; KEGG: son:SO3054 metallo-beta-lactamase family protein YP_733571.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3052 methyl-accepting chemotaxis protein YP_733572.1 PFAM: protein of unknown function DUF182; KEGG: son:SO3051 hypothetical xanthine dehydrogenase accessory factor YP_733573.1 KEGG: son:SO3050 hypothetical protein YP_733574.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: son:SO3049 isoquinoline 1-oxidoreductase, alpha subunit, putative YP_733575.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: son:SO3048 isoquinoline 1-oxidoreductase, beta subunit, putative YP_733576.1 PFAM: protein of unknown function DUF1097; KEGG: son:SO3047 hypothetical protein YP_733577.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: sdn:Sden_0861 chemotaxis sensory transducer YP_733578.1 KEGG: son:SO2209 hypothetical protein YP_733579.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: eci:UTI89_P067 transposase YP_733580.1 KEGG: cps:CPS_2938 hypothetical protein YP_733581.1 PFAM: restriction endonuclease; KEGG: dde:Dde_2800 hypothetical protein YP_733582.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction YP_733583.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_733584.1 Involved in cell division; probably involved in intracellular septation YP_733585.1 PFAM: ferric iron reductase; KEGG: son:SO3034 ferric iron reductase protein, putative YP_733586.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO3033 ferric alcaligin siderophore receptor YP_733587.1 PFAM: IucA/IucC family protein; KEGG: son:SO3032 siderophore biosynthesis protein, putative YP_733588.1 KEGG: son:SO3031 siderophore biosynthesis protein, putative YP_733589.1 KEGG: son:SO3030 siderophore biosynthesis protein YP_733590.1 KEGG: son:SO3029 hypothetical protein YP_733591.1 KEGG: son:SO3027 hypothetical protein YP_733592.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_733593.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_733594.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate YP_733595.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_733596.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_733597.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_733598.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: son:SO3017 TrpH family protein YP_733599.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain protein; KEGG: son:SO3016 Sua5/YciO/YrdC/YwlC family protein YP_733600.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: son:SO3015 putative segregation and condensation protein A YP_733601.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: son:SO3014 putative segregation and condensation protein B YP_733602.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sdn:Sden_2436 pseudouridine synthase, Rsu YP_733603.1 PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: son:SO2935 short chain dehydrogenase YP_733604.1 KEGG: son:SO2934 hypothetical protein YP_733605.1 SohB; periplasmic protein; member of the peptidase S49 family YP_733606.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: son:SO2932 transcriptional regulator, AraC family YP_733607.1 KEGG: cps:CPS_3023 hypothetical protein YP_733608.1 KEGG: son:SO2931 hypothetical protein YP_733609.1 KEGG: son:SO2930 hypothetical protein YP_733610.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: ade:Adeh_2257 hypothetical protein YP_733611.1 PFAM: virulence factor family protein; KEGG: atc:AGR_C_4582 virulence gene acvB product YP_733612.1 KEGG: son:SO2929 hypothetical protein YP_733613.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: son:SO2928 acyl-CoA thioesterase I, putative YP_733614.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2927 ABC transporter, ATP-binding protein YP_733615.1 PFAM: protein of unknown function DUF214; KEGG: son:SO2926 ABC transporter, permease, putative YP_733616.1 KEGG: son:SO2924 signal peptidase I family protein; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B YP_733617.1 TIGRFAM: sodium/glutamate symporter; PFAM: sodium/glutamate symporter; KEGG: son:SO2923 sodium/glutamate symporter YP_733618.1 TIGRFAM: conserved hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: son:SO2922 hypothetical protein YP_733619.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate YP_733620.1 PFAM: protein of unknown function UPF0118; KEGG: son:SO2920 hypothetical protein YP_733621.1 PFAM: conserved hypothetical protein 95; KEGG: son:SO2919 hypothetical protein YP_733622.1 KEGG: son:SO4126 hypothetical protein YP_733623.1 KEGG: son:SO2918 hypothetical protein YP_733624.1 KEGG: son:SO2917 hypothetical protein YP_733625.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_733626.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_733627.1 PFAM: protein of unknown function DUF412; KEGG: son:SO2914 hypothetical protein YP_733628.1 activates pyruvate formate-lyase 1 under anaerobic conditions YP_733629.1 KEGG: son:SO2912 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL YP_733630.1 TIGRFAM: formate/nitrite transporter; PFAM: formate/nitrite transporter; KEGG: son:SO2911 formate transporter, putative YP_733631.1 PFAM: C4-dicarboxylate anaerobic carrier; Na+/H+ antiporter NhaC; KEGG: vpa:VPA1014 putative S-transferase YP_733632.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2907 TonB-dependent receptor domain protein YP_733633.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: son:SO2906 hypothetical protein YP_733634.1 PFAM: O-methyltransferase, family 2; Methyltransferase type 12; KEGG: son:SO2905 O-methyltransferase, putative YP_733635.1 TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: son:SO2903 cysteine synthase A YP_733636.1 PFAM: RDD domain containing protein; KEGG: son:SO2902 hypothetical protein YP_733637.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_733638.1 KEGG: pfo:Pfl_1677 hypothetical protein YP_733639.1 KEGG: son:SO2900 hypothetical protein YP_733640.1 putative role in sulfur assimilation YP_733641.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: son:SO2898 SMC family protein YP_733642.1 KEGG: son:SO2897 cell division protein ZipA; TIGRFAM: cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; SMART: cell division protein ZipA YP_733643.1 KEGG: son:SO2896 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_733644.1 KEGG: son:SO2863 hypothetical protein YP_733645.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: son:SO2862 HDIG domain protein YP_733646.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: son:SO2861 hypothetical protein YP_733647.1 PFAM: DSBA oxidoreductase; KEGG: son:SO2860 thiol:disulfide interchange protein, DsbA family YP_733648.1 KEGG: son:SO2858 hypothetical protein YP_733649.1 PFAM: Na+/solute symporter; KEGG: son:SO2857 sodium/solute symporter family protein YP_733650.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: son:SO2856 CBS domain protein YP_733651.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: son:SO2855 exonuclease YP_733652.1 PFAM: regulatory protein, MarR; KEGG: ppr:PBPRB1157 putative transcriptional regulator, MarR family YP_733653.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: ppr:PBPRB1158 hypothetical alcohol dehydrogenase, zinc-containing YP_733654.1 KEGG: son:SO2854 hypothetical protein YP_733655.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis YP_733656.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: son:SO2852 transcriptional regulator, GntR family YP_733657.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate YP_733658.1 KEGG: son:SO3571 hypothetical protein YP_733659.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate YP_733660.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO3564 peptidyl-dipeptidase Dcp YP_733661.1 SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO3563 SM-20 domain protein YP_733662.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2850 acetyltransferase, GNAT family YP_733663.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2849 acetyltransferase, GNAT family YP_733664.1 KEGG: son:SO2848 hypothetical protein YP_733666.1 KEGG: son:SO1840 hypothetical protein YP_733667.1 KEGG: son:SO1842 hypothetical protein YP_733668.1 KEGG: son:SO1843 hypothetical protein YP_733669.1 PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: son:SO1844 extracellular nuclease, putative YP_733670.1 KEGG: son:SO1845 hypothetical protein YP_733671.1 KEGG: son:SO1846 hypothetical protein YP_733672.1 KEGG: son:SO1848 hypothetical protein YP_733673.1 KEGG: son:SO1849 hypothetical protein YP_733674.1 PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO1850 DnaJ domain protein YP_733675.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA YP_733676.1 PFAM: glutaredoxin 2; KEGG: son:SO1852 hypothetical protein YP_733677.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth YP_733678.1 KEGG: son:SO1854 hypothetical protein YP_733679.1 PFAM: ribosome modulation factor; KEGG: son:SO1855 ribosome modulation factor YP_733680.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_733681.1 KEGG: son:SO1857 hypothetical ATP-dependent protease YP_733682.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system YP_733683.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_733684.1 KEGG: son:SO1862 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_733685.1 PFAM: histone family protein DNA-binding protein; KEGG: son:SO1863 DNA-binding protein, HU family YP_733686.1 KEGG: msu:MS1955 hypothetical protein YP_733687.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1865 ABC transporter, ATP-binding protein YP_733688.1 KEGG: son:SO1866 hypothetical protein YP_733689.1 PFAM: protein of unknown function DUF480; KEGG: son:SO1867 hypothetical protein YP_733690.1 KEGG: son:SO1868 hypothetical protein YP_733692.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_733693.1 PFAM: S-adenosylmethionine decarboxylase; KEGG: son:SO1871 S-adenosylmethionine decarboxylase proenzyme, putative YP_733694.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_733695.1 PFAM: protein of unknown function DUF188; KEGG: son:SO2894 YaiI/YqxD family protein YP_733696.1 PFAM: YceI family protein; KEGG: son:SO2893 hypothetical protein YP_733697.1 KEGG: son:SO2891 hypothetical protein YP_733698.1 KEGG: son:SO2890 hypothetical protein YP_733699.1 PFAM: protein of unknown function DUF785; KEGG: sdn:Sden_2273 protein of unknown function DUF785 YP_733700.1 KEGG: son:SO2889 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_733701.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein YP_733702.1 involved in regulation of intracellular pH under alkaline conditions YP_733703.1 Multifunctional regulator of fatty acid metabolism YP_733704.1 PFAM: SpoVR family protein; KEGG: son:SO2884 hypothetical protein YP_733705.1 PFAM: protein of unknown function DUF444; KEGG: son:SO2883 hypothetical protein YP_733706.1 PFAM: manganese and iron superoxide dismutase; KEGG: son:SO2881 superoxide dismutase, Fe YP_733707.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: son:SO2880 glutaredoxin domain protein YP_733708.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: son:SO2879 uracil permease YP_733709.1 KEGG: son:SO2878 hypothetical protein YP_733710.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP YP_733711.1 KEGG: son:SO1942 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_733712.1 SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO1944 hypothetical protein YP_733713.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1945 sensor protein PhoQ YP_733714.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1946 transcriptional regulatory protein PhoP YP_733715.1 KEGG: son:SO1947 hypothetical protein YP_733716.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO1948 sodium:dicarboxylate symporter family protein YP_733717.1 PFAM: Ig domain protein, group 1 domain protein; KEGG: son:SO1949 invasin domain protein YP_733718.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_733719.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_733720.1 KEGG: son:SO2650 hypothetical protein YP_733721.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation YP_733722.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO2648 DNA-binding response regulator, LuxR family YP_733723.1 PFAM: thioesterase superfamily protein; KEGG: son:SO2647 cytosolic long-chain acyl-CoA thioester hydrolase family protein YP_733724.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_733725.1 PFAM: protein of unknown function DUF299; KEGG: son:SO2645 hypothetical protein YP_733726.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_733727.1 PFAM: FAD linked oxidase domain protein; KEGG: son:SO2643 oxidoreductase, FAD-binding, putative YP_733728.1 PFAM: protein of unknown function DUF1285; KEGG: son:SO2642 hypothetical protein YP_733729.1 PFAM: regulatory protein, MarR; KEGG: son:SO2640 transcriptional regulator, MarR family YP_733730.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: sco:SCO0432 probable secreted peptidase YP_733731.1 KEGG: son:SO2639 hypothetical protein YP_733732.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: son:SO2638 leucine dehydrogenase YP_733733.1 KEGG: son:SO2637 hypothetical protein YP_733734.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: son:SO2636 hypothetical protein YP_733735.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_733736.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis YP_733737.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_733738.1 PFAM: NUDIX hydrolase; KEGG: son:SO2631 MutT/nudix family protein YP_733739.1 KEGG: sdn:Sden_1830 pseudouridine synthase, Rsu; TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase YP_733740.1 KEGG: son:SO2629 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type YP_733741.1 PFAM: small multidrug resistance protein; KEGG: son:SO1901 sugE protein YP_733742.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_733743.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; KEGG: sdn:Sden_3045 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_733744.1 KEGG: sdn:Sden_3044 hypothetical protein YP_733745.1 KEGG: son:SO1903 hypothetical protein YP_733746.1 KEGG: ilo:IL1490 hypothetical protein YP_733747.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1907 transcriptional regulator, LysR family YP_733748.1 KEGG: son:SO1908 hypothetical protein YP_733749.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: son:SO1909 hypothetical protein YP_733750.1 TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: son:SO1910 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_733751.1 PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: son:SO1911 oxidoreductase, short chain dehydrogenase/reductase family YP_733752.1 KEGG: son:SO1912 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase YP_733753.1 KEGG: son:SO1913 hypothetical protein YP_733754.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1916 transcriptional regulator, LysR family YP_733755.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1917 multidrug resistance protein, putative YP_733756.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: son:SO1918 MATE efflux family protein YP_733757.1 KEGG: son:SO1921 hypothetical protein YP_733758.1 PFAM: Uncharacterized conserved protein UCP029143; KEGG: son:SO1922 hypothetical protein YP_733760.1 PFAM: acriflavin resistance protein; KEGG: son:SO1923 AcrB/AcrD/AcrF family protein YP_733761.1 PFAM: acriflavin resistance protein; KEGG: son:SO1924 AcrB/AcrD/AcrF family protein YP_733762.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1925 HlyD family secretion protein YP_733763.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_733764.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: son:SO1927 succinate dehydrogenase, cytochrome b556 subunit YP_733765.1 KEGG: son:SO1927.1 hypothetical succinate dehydrogenase, hydrophobic subunit YP_733766.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_733767.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_733768.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_733769.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: son:SO1931 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) YP_733770.1 catalyzes the interconversion of succinyl-CoA and succinate YP_733771.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: son:SO1933 succinyl-CoA synthetase alpha chain YP_733772.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO1935 regulator of nucleoside diphosphate kinase YP_733773.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1936 acetyltransferase, GNAT family YP_733774.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer YP_733775.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_733776.1 KEGG: son:SO1939 hypothetical protein YP_733777.1 KEGG: son:SO1940 hypothetical protein YP_733778.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein, CorA family protein; KEGG: son:SO1941 magnesium and cobalt transport protein CorA YP_733779.1 KEGG: son:SO2628 stress response protein CspD; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_733780.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_733781.1 KEGG: son:SO2626 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_733782.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_733783.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_733784.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_733785.1 PFAM: 17 kDa surface antigen; KEGG: son:SO2622 hypothetical protein YP_733786.1 PFAM: protein of unknown function DUF34; KEGG: son:SO2621 conserved hypothetical protein TIGR00486 YP_733787.1 PFAM: Auxin Efflux Carrier; KEGG: son:SO2620 hypothetical protein YP_733788.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_733789.1 KEGG: son:SO2618 ATP-binding protein, Mrp/Nbp35 family YP_733790.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_733791.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_733792.1 PFAM: aminotransferase, class IV; KEGG: son:SO2615 4-amino-4-deoxychorismate lyase YP_733793.1 PFAM: aminodeoxychorismate lyase; KEGG: son:SO2614 conserved hypothetical protein TIGR00247 YP_733794.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_733795.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: son:SO2612 DNA polymerase III, delta prime subunit YP_733796.1 KEGG: son:SO2611 type IV pilus biogenesis protein pilZ YP_733797.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: son:SO2610 hydrolase, TatD family YP_733798.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA YP_733799.1 PFAM: nucleoside recognition domain protein; KEGG: son:SO2607 spore maturation protein A-related protein YP_733800.1 PFAM: Mammalian cell entry related domain protein; KEGG: son:SO2606 PqiB family protein YP_733801.1 PFAM: Paraquat-inducible protein A; KEGG: sdn:Sden_1717 paraquat-inducible protein A YP_733802.1 PFAM: Paraquat-inducible protein A; KEGG: sdn:Sden_1718 paraquat-inducible protein A YP_733803.1 PFAM: YebG family protein; KEGG: son:SO2604 hypothetical protein YP_733804.1 PFAM: GAF domain protein; KEGG: son:SO2603 GAF domain-containing protein YP_733805.1 affects solute and DNA transport through an unknown mechanism YP_733806.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 YP_733807.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO2600 aminopeptidase N YP_733808.1 KEGG: son:SO2598 hypothetical protein YP_733809.1 PFAM: protein of unknown function DUF1302; KEGG: son:SO2597 hypothetical protein YP_733810.1 PFAM: protein of unknown function DUF1329; KEGG: son:SO2596 hypothetical protein YP_733811.1 KEGG: son:SO2595 BNR repeat protein YP_733812.1 KEGG: son:SO2594 hypothetical protein YP_733813.1 PFAM: NAD-glutamate dehydrogenase; KEGG: son:SO2593 hypothetical protein YP_733814.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_733815.1 PFAM: protein of unknown function DUF1379; KEGG: son:SO2591 hypothetical protein YP_733816.1 PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: son:SO2136 aldehyde-alcohol dehydrogenase YP_733817.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO2137 multiple antibiotic resistance protein YP_733818.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: cps:CPS_1937 methyl-accepting chemotaxis protein YP_733819.1 PFAM: phage integrase family protein; KEGG: vvy:VV2262 phage integrase YP_733820.1 KEGG: son:SO1441 hypothetical protein YP_733821.1 PFAM: Prophage CP4-57 regulatory; KEGG: ecj:JW2604 DNA-binding transcriptional activator YP_733822.1 KEGG: son:SO1442 hypothetical protein YP_733823.1 KEGG: son:SO1443 hypothetical protein YP_733824.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: son:SO1445 transcriptional regulator, CopG family YP_733825.1 KEGG: son:SO1447 retinol acyltransferase domain protein YP_733826.1 PFAM: phage integrase family protein; KEGG: son:SO1448 site-specific recombinase, phage integrase family YP_733827.1 KEGG: son:SO1450 hypothetical protein YP_733828.1 KEGG: son:SO1451 hypothetical protein YP_733829.1 PFAM: YagBYeeUYfjZ family protein; KEGG: son:SO1453 hypothetical protein YP_733830.1 KEGG: son:SO1454 hypothetical protein YP_733831.1 TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: vfi:VFA0522 DNA repair protein RadC YP_733832.1 PFAM: Prophage CP4-57 regulatory; KEGG: ilo:IL0640 predicted transcriptional regulator YP_733833.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_05030 sigma 54-dependent transcriptional activator YP_733834.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: bth:BT0335 putative ATPase YP_733835.1 SMART: von Willebrand factor, type A; KEGG: yps:YPTB0004 hypothetical protein YP_733836.1 KEGG: noc:Noc_0407 hypothetical protein YP_733838.1 KEGG: sde:Sde_2759 hypothetical protein YP_733839.1 KEGG: mta:Moth_2243 hypothetical protein YP_733840.1 KEGG: sde:Sde_2757 hypothetical protein YP_733841.1 KEGG: sde:Sde_2756 hypothetical protein YP_733842.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: eca:ECA3659 hypothetical protein YP_733843.1 KEGG: sde:Sde_2753 hypothetical protein YP_733844.1 PFAM: Zeta toxin family protein; KEGG: pha:PSHAa0327 hypothetical protein YP_733848.1 KEGG: pcr:Pcryo_0920 putative ATP-binding protein YP_733852.1 KEGG: dps:DP1989 hypothetical protein YP_733853.1 KEGG: pcr:Pcryo_0917 hypothetical protein YP_733854.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: vpa:VP0880 hypothetical protein YP_733855.1 PFAM: transposase, IS4 family protein; KEGG: son:SO3296 ISSod12, transposase YP_733856.1 KEGG: son:SO2248 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_733857.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_733858.1 PFAM: protein of unknown function UPF0227; KEGG: son:SO2251 conserved hypothetical protein YP_733859.1 catalyzes the hydrolysis of acylphosphate YP_733860.1 KEGG: son:SO2254 hypothetical protein YP_733861.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO2255 transcription-repair coupling factor YP_733862.1 KEGG: son:SO2256 hypothetical protein YP_733863.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: son:SO2257 lipoprotein releasing system transmembrane protein LolE YP_733864.1 KEGG: son:SO2258 lipoprotein releasing system ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_733865.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: son:SO2259 lipoprotein releasing system transmembrane protein LolC, putative YP_733866.1 PFAM: inositol monophosphatase; KEGG: son:SO2260 extragenic suppressor protein SuhB YP_733867.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO2261 RNA methyltransferase, TrmH family, group 1 YP_733868.1 TIGRFAM: serine O-acetyltransferase; KEGG: son:SO2262 serine acetyltransferase YP_733869.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: son:SO2263 Rrf2 family protein YP_733870.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis YP_733871.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: son:SO2265 NifU family protein YP_733872.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: son:SO2266 HesB/YadR/YfhF family protein YP_733873.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_733874.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_733875.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: son:SO2269 ferredoxin, 2Fe-2S YP_733876.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO2270 ribosomal protein S6 modification protein YP_733877.1 PFAM: protein of unknown function DUF528; KEGG: son:SO2271 hypothetical protein YP_733878.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_733879.1 PFAM: heat shock protein Hsp20; KEGG: son:SO2277 16 kDa heat shock protein A YP_733880.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_733881.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: son:SO2279 acetolactate synthase large subunit YP_733882.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2280 bicyclomycin resistance protein YP_733883.1 KEGG: son:SO2281 alkaline phosphatase YP_733884.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: son:SO2282 transcriptional regulator, GntR family YP_733885.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO2285 hypothetical protein YP_733886.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO2286 sulfate permease family protein YP_733887.1 PFAM: Integrase, catalytic region; KEGG: pcr:Pcryo_0715 Integrase, catalytic region YP_733888.1 KEGG: dde:Dde_2987 transposase YP_733889.1 KEGG: sdn:Sden_2314 hypothetical protein YP_733890.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO2288 glutathione-S-transferase domain protein YP_733891.1 PFAM: Rhodanese domain protein; KEGG: son:SO2290 rhodanese domain protein YP_733892.1 KEGG: son:SO2291 hypothetical protein YP_733893.1 KEGG: son:SO2234 hypothetical protein YP_733894.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose YP_733895.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: son:SO2237 phosphotransferase system, enzyme I YP_733896.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: son:SO2238 phosphocarrier protein HPr YP_733897.1 KEGG: son:SO2239 hypothetical protein YP_733898.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: son:SO2240 methyl-accepting chemotaxis protein YP_733899.1 KEGG: son:SO2241 hypothetical protein YP_733900.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO2244 transcriptional regulator, LacI family YP_733901.1 KEGG: son:SO2245 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_733902.1 KEGG: sdn:Sden_1373 methyltransferase type 12 YP_733903.1 KEGG: son:SO2146 hypothetical protein YP_733904.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: son:SO2147 exodeoxyribonuclease V, alpha subunit YP_733905.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: son:SO2148 exodeoxyribonuclease V, beta subunit YP_733906.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: son:SO2149 exodeoxyribonuclease V, gamma subunit YP_733907.1 PFAM: transglutaminase domain protein; KEGG: son:SO2150 transglutaminase family protein YP_733908.1 PFAM: protein of unknown function DUF58; KEGG: son:SO2151 hypothetical protein YP_733909.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: son:SO2153 MoxR protein YP_733910.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3445 transposase IS116/IS110/IS902 YP_733911.1 PFAM: transposase, IS4 family protein; KEGG: son:SO3296 ISSod12, transposase YP_733912.1 KEGG: sdn:Sden_3235 DNA-directed DNA polymerase YP_733913.1 PFAM: peptidase S24, S26A and S26B; KEGG: son:SOA0013 umuD protein YP_733914.1 PFAM: protein of unknown function DUF938; KEGG: son:SO2050 hypothetical protein YP_733915.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO2052 hypothetical oxidoreductase YP_733916.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2053 transcriptional regulator, LysR family YP_733917.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO2054 alcohol dehydrogenase class III YP_733918.1 PFAM: putative esterase; KEGG: son:SO2055 esterase, putative YP_733919.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: hch:HCH_03035 secreted trypsin-like serine protease YP_733920.1 PFAM: Uncharacterized conserved protein UCP025560; KEGG: son:SO2062 hypothetical protein YP_733921.1 KEGG: son:SO2063 hypothetical protein YP_733922.1 KEGG: son:SO2064 hypothetical protein YP_733923.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: son:SO2065 tyrosine-specific transport protein YP_733924.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis YP_733925.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_733926.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_733927.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_733928.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate YP_733929.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_733930.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_733931.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_733932.1 KEGG: son:SO2075 hypothetical protein YP_733933.1 KEGG: son:SO2076 hypothetical protein YP_733934.1 KEGG: son:SO2077 acyltransferase domain protein YP_733935.1 KEGG: son:SO2079 hypothetical protein YP_733936.1 SMART: helicase c2; KEGG: son:SO2081 ATP-dependent helicase, DinG family YP_733937.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ppr:PBPRB1825 hypothetical receptor YP_733938.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO2083 methyl-accepting chemotaxis protein YP_733939.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_733940.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_733941.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_733942.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA YP_733943.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; KEGG: son:SO2089 hydrogenase expression/formation protein HypA YP_733944.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: son:SO2090 hydrogenase expression/formation protein HypE YP_733945.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: son:SO2091 hydrogenase expression/formation protein HypD YP_733946.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: son:SO2092 hydrogenase assembly chaperone hypC/hupF YP_733947.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: son:SO2093 hydrogenase accessory protein HypB YP_733948.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain protein; zinc finger, HypF domain protein; KEGG: son:SO2094 hydrogenase maturation protein HypF YP_733949.1 KEGG: son:SO2095 hypothetical protein YP_733950.1 TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52, hydrogen uptake protein; KEGG: son:SO2096 hydrogenase expression/formation protein YP_733951.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: son:SO2097 quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit YP_733952.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: son:SO2098 hydrogenase large chain YP_733953.1 KEGG: son:SO2099 hydrogenase small chain; TIGRFAM: hydrogenase (NiFe) small subunit HydA; Twin-arginine translocation pathway signal; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein YP_733954.1 PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: son:SO2100 thioredoxin family protein YP_733955.1 KEGG: son:SO2101 lipoprotein, putative YP_733956.1 KEGG: son:SO2102 hypothetical protein YP_733957.1 PFAM: ApbE family lipoprotein; KEGG: son:SO2103 ApbE family protein YP_733958.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2104 DNA-binding response regulator YgiX, putative YP_733959.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2105 sensor protein YgiY, putative YP_733960.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_733961.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_733962.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO2109 hypothetical protein YP_733963.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: son:SO2110 hypothetical protein YP_733964.1 KEGG: son:SO2111 hypothetical protein YP_733965.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_733966.1 PFAM: protein of unknown function DUF490; KEGG: son:SO2113 hypothetical protein YP_733967.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO2114 hypothetical protein YP_733968.1 PFAM: peptidase T2, asparaginase 2; KEGG: son:SO2115 asparaginase family protein YP_733969.1 PFAM: CBS domain containing protein; KEGG: son:SO2228 CBS domain protein YP_733970.1 KEGG: son:SO2229 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD/DEAH box helicase domain protein YP_733971.1 PFAM: periplasmic nitrate reductase NapE; KEGG: sdn:Sden_1495 periplasmic nitrate reductase NapE YP_733972.1 PFAM: NapD family protein; KEGG: sdn:Sden_1496 NapD YP_733973.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC YP_733974.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: sdn:Sden_1498 nitrate reductase cytochrome c-type subunit (NapB) YP_733975.1 TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: sdn:Sden_1499 periplasmic nitrate reductase C-type cytochrome, NapC/NirT YP_733976.1 KEGG: dps:DP0411 hypothetical protein YP_733977.1 KEGG: fnu:FN0185 predicted ATP-dependent endonuclease of the OLD family YP_733978.1 PFAM: isochorismatase hydrolase; KEGG: rme:Rmet_5659 isochorismatase hydrolase YP_733979.1 KEGG: pae:PA2504 hypothetical protein YP_733980.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_06505 histone acetyltransferase HPA2/related acetyltransferase YP_733981.1 KEGG: son:SO2479 hypothetical protein YP_733982.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_733983.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO2477 alcohol dehydrogenase, iron-containing YP_733984.1 PFAM: aminotransferase, class V; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO2476 polysaccharide biosynthesis protein YP_733985.1 PFAM: carbonic anhydrase; KEGG: son:SO2474 carbonic anhydrase family protein YP_733986.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO2473 hydrolase, alpha/beta fold family YP_733987.1 PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: son:SO2472 D-alanyl-D-alanine carboxypeptidase-related protein YP_733988.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_733989.1 TIGRFAM: conserved hypothetical protein; PFAM: arsenate reductase and related; KEGG: son:SO2470 hypothetical protein YP_733990.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: vvy:VV0250 outer membrane receptor protein YP_733991.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VPA0365 putative transcriptional regulator protein YP_733992.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: vpa:VPA0364 putative efflux protein YP_733993.1 PFAM: acriflavin resistance protein; KEGG: vpa:VPA0363 putative efflux protein YP_733994.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: vpa:VPA0362 putative outer membrane protein YP_733995.1 TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: vpa:VP2017 paraquat-inducible protein A YP_733996.1 PFAM: Mammalian cell entry related domain protein; KEGG: ppr:PBPRB1160 putative paraquat-inducible protein B YP_733997.1 PFAM: protein of unknown function DUF330; KEGG: noc:Noc_2723 protein of unknown function DUF330 YP_733998.1 PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: mag:amb4188 di- and tricarboxylate transporters YP_733999.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: pae:PA3927 probable transcriptional regulator YP_734000.1 KEGG: son:SO2459 glucoamylase; TIGRFAM: glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related YP_734001.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2458 transporter, putative YP_734002.1 PFAM: YCII-related; KEGG: son:SO2457 hypothetical protein YP_734003.1 KEGG: pcr:Pcryo_0089 alpha/beta hydrolase fold YP_734004.1 KEGG: son:SO2451 hypothetical protein YP_734005.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pfo:Pfl_3201 alkylhydroperoxidase AhpD core YP_734006.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ilo:IL2485 transcriptional regulator, AraC family YP_734007.1 KEGG: son:SO2450 alpha-glucosidase YP_734008.1 KEGG: son:SO2449 hypothetical protein YP_734009.1 PFAM: NUDIX hydrolase; KEGG: son:SO2448 MutT/nudix family protein YP_734010.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: son:SO2447 channel protein, hemolysin III family subfamily YP_734011.1 KEGG: son:SO2446 hypothetical protein YP_734012.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_734013.1 KEGG: son:SO2444 phosphomethylpyrimidine kinase / thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1 YP_734014.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: son:SO2443 thiF protein, putative YP_734015.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: son:SO2442 thiS protein, putative YP_734016.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_734017.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center YP_734018.1 KEGG: son:SO2439.2 hypothetical methyl-accepting chemotaxis protein YP_734019.1 KEGG: son:SO2439 SrpA-related protein YP_734020.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2438 transcriptional regulator, LysR family YP_734021.1 KEGG: sdn:Sden_1895 hypothetical protein YP_734022.1 KEGG: son:SO2437 hypothetical protein YP_734023.1 TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: sdn:Sden_1893 alpha-L-glutamate ligase-related protein YP_734024.1 KEGG: sdn:Sden_1892 gonadoliberin III-related protein YP_734025.1 PFAM: protein of unknown function DUF785; KEGG: sdn:Sden_1891 protein of unknown function DUF785 YP_734026.1 TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2436 methyltransferase, putative YP_734027.1 TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2435 methyltransferase, putative YP_734028.1 KEGG: son:SO2434 extracellular solute-binding proteins, family 3/GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3 YP_734029.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_734030.1 PFAM: protein of unknown function DUF28; KEGG: son:SO2432 conserved hypothetical protein TIGR01033 YP_734031.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_734032.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_734033.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_734034.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2427 TonB-dependent receptor, putative YP_734035.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2426 DNA-binding response regulator YP_734036.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: son:SO2424 zinc carboxypeptidase domain protein YP_734037.1 KEGG: son:SO2423 hypothetical protein YP_734038.1 PFAM: protein of unknown function DUF1315; KEGG: son:SO2422 hypothetical protein YP_734039.1 converts asparagine to aspartate and ammonia YP_734040.1 TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: son:SO2420 signal peptide peptidase SppA, 67K type YP_734041.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO2419 2,4-dienoyl-CoA reductase, putative YP_734042.1 PFAM: Integrase, catalytic region; KEGG: pcr:Pcryo_0715 Integrase, catalytic region YP_734043.1 KEGG: dde:Dde_2987 transposase YP_734044.1 KEGG: sdn:Sden_2845 hypothetical protein YP_734045.1 PFAM: ferredoxin; KEGG: son:SO2417 iron-sulfur cluster-binding protein YP_734046.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA YP_734047.1 Catalyzes the rate-limiting step in dNTP synthesis YP_734048.1 KEGG: son:SO2414 phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_734049.1 Involved in ubiquinone biosynthesis YP_734050.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: son:SO2411 DNA gyrase subunit A YP_734051.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_734052.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_734053.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_734054.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_734055.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_734056.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_734057.1 PFAM: protein of unknown function DUF1049; KEGG: son:SO2400 hypothetical protein YP_734058.1 KEGG: son:SO2399 hypothetical protein YP_734059.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_734060.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO2397 short chain dehydrogenase YP_734061.1 KEGG: son:SO2396 hypothetical protein YP_734062.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO2395 acyl-CoA dehydrogenase family protein YP_734063.1 KEGG: son:SO2394 penicillin-binding protein 4; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C YP_734064.1 KEGG: son:SO2393 hypothetical protein YP_734065.1 KEGG: son:SO2391 hypothetical protein YP_734066.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome YP_734067.1 multidrug efflux protein involved in adaptation to low energy shock YP_734068.1 PFAM: beta-lactamase; KEGG: son:SO2388 beta-lactamase YP_734069.1 PFAM: DTW domain containing protein; KEGG: son:SO2387 conserved hypothetical protein YP_734070.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bth:BT0304 acriflavine resistance protein A precursor YP_734071.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bth:BT0305 putative aminoglycoside efflux pump (acriflavine resistance protein) YP_734072.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sat:SYN_02946 type I secretion outer membrane protein YP_734073.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF839; KEGG: son:SO2385 hypothetical protein YP_734074.1 PFAM: phage integrase family protein; KEGG: son:SO2384 site-specific recombinase, phage integrase family YP_734075.1 KEGG: son:SO2383 hypothetical protein YP_734076.1 KEGG: son:SO2381 hypothetical protein YP_734077.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2380 RecQ domain protein YP_734078.1 serine protease inhibitor, inhibits trypsin and other proteases YP_734079.1 KEGG: pha:PSHAb0175 conserved protein of unknown function ; putative lipoprotein YP_734080.1 KEGG: eli:ELI_11055 hypothetical protein YP_734081.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO2295 MATE efflux family protein YP_734082.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_734083.1 KEGG: son:SO2297 hypothetical protein YP_734084.1 KEGG: son:SO2298 hypothetical protein YP_734085.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_734086.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_734087.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: son:SO2301 50S ribosomal protein L35 YP_734088.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_734089.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO2303 thioredoxin reductase YP_734090.1 KEGG: son:SO1485 hypothetical protein YP_734091.1 TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: sdn:Sden_1741 alanine dehydrogenase YP_734092.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system YP_734093.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: son:SO2306 cell division protein FtsK, putative YP_734094.1 TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: son:SO2307 outer membrane lipoprotein carrier protein LolA YP_734095.1 PFAM: magnesium chelatase, ChlI subunit; AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: son:SO2308 ATPase, AAA family YP_734096.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_734097.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_734098.1 KEGG: son:SO2311 hypothetical protein YP_734099.1 PFAM: DsrC family protein; KEGG: son:SO2379 putative sulfite reductase YP_734100.1 PFAM: DsrH family protein; KEGG: son:SO2378 putative uncharacterized protein involved in oxidation of intracellular sulfur YP_734101.1 PFAM: DsrE family protein; KEGG: son:SO2377 putative uncharacterized protein involved in oxidation of intracellular sulfur YP_734102.1 PFAM: DsrE family protein; KEGG: son:SO2376 DsrE-related protein YP_734103.1 PFAM: protein of unknown function UPF0005; KEGG: son:SO2375 membrane protein, putative YP_734104.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2374 transcriptional regulator, LysR family YP_734105.1 uncharacterized member of the major facilitator superfamily (MFS) YP_734106.1 KEGG: cps:CPS_0533 hypothetical protein YP_734107.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate YP_734108.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source YP_734109.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism YP_734110.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sde:Sde_0770 putative phosphatase YP_734111.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: ilo:IL0306 transcriptional regulator, FadR family YP_734112.1 PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0789 endo-1,4-beta-xylanase D precursor YP_734113.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_734114.1 PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: sde:Sde_0771 transcriptional regulator, GntR family YP_734115.1 PFAM: Aldose 1-epimerase; KEGG: gka:GK1877 aldose 1-epimerase YP_734116.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sde:Sde_0766 putative LacI-type transcriptional regulator YP_734117.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sde:Sde_0767 putative sugar uptake ABC transporter ATP-binding protein YP_734118.1 PFAM: inner-membrane translocator; KEGG: sde:Sde_0768 conserved hypothetical ABC transporter permease protein YtfT YP_734119.1 membrane component of a putative sugar ABC transporter system YP_734120.1 PFAM: glycoside hydrolase, family 43; KEGG: bha:BH1867 hypothetical protein YP_734121.1 PFAM: glycoside hydrolase, family 43; KEGG: cac:CAC1529 beta-xylosidase, family 43 glycosyl hydrolase YP_734123.1 PFAM: protein of unknown function DUF1680; KEGG: sde:Sde_0778 acetyl-CoA carboxylase, biotin carboxylase YP_734124.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_0776 MJ0042 finger-like region YP_734125.1 PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0786 arabinan endo-1,5-alpha-L-arabinosidase YP_734126.1 PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0791 alpha-L-arabinofuranosidase YP_734127.1 PFAM: protein of unknown function DUF81; KEGG: ilo:IL2350 predicted permease YP_734128.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sde:Sde_2288 peptidase M24A, methionine aminopeptidase, subfamily 1 YP_734129.1 PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_3317 beta-xylosidase-like YP_734130.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: ppr:PBPRB0783 hypothetical protein YP_734131.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rso:RSc2755 hypothetical protein YP_734132.1 PFAM: phage integrase family protein; KEGG: sdn:Sden_1855 phage integrase YP_734133.1 KEGG: sdn:Sden_1854 hypothetical protein YP_734134.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO2366 response regulator YP_734135.1 KEGG: son:SO2365 hypothetical protein YP_734136.1 CcoN; FixN YP_734137.1 CcoO; FixO YP_734138.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: son:SO2362 cytochrome c oxidase, cbb3-type, CcoQ subunit YP_734139.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: son:SO2361 cytochrome c oxidase, cbb3-type, subunit III YP_734140.1 KEGG: son:SO2360 hypothetical protein YP_734141.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: son:SO2359 cation transport ATPase, E1-E2 family YP_734142.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: son:SO2358 cytochrome oxidase maturation protein, cbb3-type YP_734143.1 KEGG: son:SO2357 hypothetical protein YP_734144.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia YP_734145.1 with UspC and UspD is involved in resistance to UV irradiation YP_734146.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_734147.1 KEGG: son:SO2353 hypothetical protein YP_734148.1 KEGG: son:SO2352 bax protein, putative YP_734149.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: son:SO2351 hypothetical protein YP_734150.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_734151.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent YP_734152.1 KEGG: son:SO2346 hypothetical protein YP_734153.1 KEGG: son:SO2345 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_734154.1 PFAM: superoxide dismutase, copper/zinc binding; KEGG: tbd:Tbd_0659 superoxide dismutase, Cu-Zn YP_734155.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_734156.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: son:SO2341 alpha keto acid dehydrogenase complex, E2 component YP_734157.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: son:SO2340 alpha keto acid dehydrogenase complex, E1 component, beta subunit YP_734158.1 PFAM: dehydrogenase, E1 component; KEGG: son:SO2339 alpha keto acid dehydrogenase complex, E1 component, alpha subunit YP_734159.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism YP_734160.1 KEGG: son:SO2337 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A YP_734161.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_734162.1 negative modulator of the initiation of chromosome replication YP_734163.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: son:SO2333 hydrolase, alpha/beta fold family YP_734164.1 KEGG: son:SO2332 hypothetical protein YP_734165.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: son:SO2331 hypothetical protein YP_734166.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_734167.1 KEGG: son:SO2329 hypothetical protein YP_734168.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_734169.1 PFAM: Na+/H+ antiporter NhaC; KEGG: son:SO2481 hypothetical protein YP_734170.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_734171.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: son:SO2484 hypothetical protein YP_734172.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_734173.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_734174.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_734175.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: son:SO2488 6-phosphogluconolactonase YP_734176.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_734177.1 Represses the expression of the zwf, eda, glp and gap YP_734178.1 KEGG: son:SO2491 pyruvate kinase II; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase YP_734179.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_734180.1 PFAM: regulatory protein, TetR; KEGG: son:SO2493 transcriptional regulator, TetR family YP_734181.1 PFAM: peptidase M2, peptidyl-dipeptidase A; KEGG: son:SO2494 zinc-dependent metallopeptidase YP_734182.1 PFAM: Smr protein/MutS2; KEGG: son:SO2495 Smr domain protein YP_734183.1 KEGG: son:SO2495.1 hypothetical protein YP_734184.1 PFAM: SEC-C motif domain protein; KEGG: son:SO2497 conserved hypothetical protein YP_734185.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO2498 sensory box protein YP_734186.1 KEGG: son:SO2499 hypothetical protein YP_734187.1 KEGG: son:SO2500 hypothetical protein YP_734188.1 KEGG: son:SO2501 radical activating enzyme YP_734189.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His YP_734190.1 PFAM: Rhomboid family protein; KEGG: son:SO2504 hypothetical protein YP_734191.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_734193.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO2507 GGDEF domain protein YP_734194.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: son:SO2508 RnfAE/NqrDE family protein YP_734195.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen YP_734196.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen YP_734197.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents YP_734198.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen YP_734199.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_734200.1 KEGG: son:SO2514 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_734201.1 KEGG: son:SO2515 hypothetical protein YP_734202.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VPA0602 putative transcription activator NahR YP_734203.1 PFAM: Radical SAM domain protein; KEGG: vpa:VPA0601 putative arylsulfatase regulator YP_734204.1 PFAM: sulfatase; KEGG: vpa:VPA0600 putative arylsulfatase AtsD YP_734205.1 KEGG: ilo:IL2513 hypothetical protein YP_734206.1 PFAM: PepSY-associated TM helix domain protein; KEGG: ilo:IL2512 uncharacterized iron-regulated membrane protein YP_734207.1 PFAM: beta-lactamase domain protein; KEGG: eli:ELI_06065 Zn-dependent hydrolase, glyoxylase family protein YP_734208.1 KEGG: son:SO2517 hypothetical protein YP_734209.1 KEGG: son:SO2518 hypothetical protein YP_734210.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: son:SO2519 transcriptional regulator, AraC family YP_734211.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2520 GGDEF domain protein YP_734212.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2523 hypothetical TonB-dependent receptor YP_734213.1 PFAM: phytase; KEGG: son:SO2524 phytase, putative YP_734214.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2525 ABC transporter, ATP-binding protein YP_734215.1 PFAM: Activator of Hsp90 ATPase family protein; KEGG: dar:Daro_4073 hypothetical protein YP_734216.1 KEGG: hch:HCH_01547 hypothetical protein YP_734217.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; Hpt domain protein; KEGG: son:SO2127 response regulator YP_734218.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: son:SO2126 protein-glutamate methylesterase CheB YP_734219.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_734220.1 PFAM: MCP methyltransferase, CheR-type; KEGG: son:SO2124 chemotaxis protein methyltransferase CheR YP_734221.1 PFAM: chemotaxis sensory transducer; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: son:SO2123 methyl-accepting chemotaxis protein YP_734222.1 PFAM: CheW domain protein; KEGG: son:SO2122 purine-binding chemotaxis protein CheW YP_734223.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: son:SO2121 chemotaxis protein CheA YP_734224.1 PFAM: response regulator receiver; KEGG: son:SO2120 chemotaxis protein CheY YP_734225.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: son:SO2119 response regulator YP_734226.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: son:SO2118 SpoIIAA family protein YP_734227.1 PFAM: chemotaxis sensory transducer; KEGG: son:SO2117 methyl-accepting chemotaxis protein YP_734228.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: son:SO2116 acetyltransferase, GNAT family YP_734229.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr8233 efflux pump protein FarB YP_734230.1 PFAM: secretion protein HlyD family protein; KEGG: ret:RHE_CH03357 probable protein secretion protein, HlyD family YP_734231.1 PFAM: regulatory protein, MarR; KEGG: ret:RHE_CH03358 probable transcriptional regulator protein, MarR family YP_734232.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2049 GGDEF family protein YP_734233.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: son:SO2048 membrane protein, putative YP_734234.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO2047 prolyl oligopeptidase family protein YP_734235.1 PFAM: regulatory protein, MarR; KEGG: son:SO2046 transcriptional regulator, MarR family YP_734236.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: son:SO2045 cation efflux family protein YP_734237.1 KEGG: son:SO2044 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_734238.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_734239.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_734240.1 PFAM: protein of unknown function DUF195; KEGG: son:SO2041 hypothetical protein YP_734241.1 PFAM: Lytic transglycosylase, catalytic; KEGG: son:SO2040 soluble lytic murein transglycosylase, putative YP_734242.1 PFAM: EAL domain protein; KEGG: son:SO2039 hypothetical protein YP_734243.1 KEGG: sdn:Sden_3355 hypothetical protein YP_734244.1 PFAM: transposase, IS4 family protein; KEGG: son:SO3296 ISSod12, transposase YP_734245.1 KEGG: csa:Csal_0736 hypothetical protein YP_734246.1 KEGG: dde:Dde_2987 transposase YP_734247.1 PFAM: Integrase, catalytic region; KEGG: pcr:Pcryo_0715 Integrase, catalytic region YP_734248.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: plt:Plut_1820 RNA-directed DNA polymerase YP_734249.1 KEGG: ava:Ava_4004 hypothetical protein YP_734250.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sdn:Sden_3235 DNA-directed DNA polymerase YP_734251.1 KEGG: son:SO2225 hypothetical protein YP_734252.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2224 acetyltransferase, GNAT family YP_734253.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: son:SO2223 peptidase, putative YP_734254.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: son:SO2222 fumarate hydratase, class I, anaerobic, putative YP_734255.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: son:SO2221 para-aminobenzoate synthase, component I YP_734256.1 PFAM: NUDIX hydrolase; KEGG: son:SO2220 MutT/nudix family protein YP_734257.1 KEGG: son:SO2219 hypothetical protein YP_734258.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_734259.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_734260.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; KEGG: son:SO2216 sensory box protein YP_734261.1 PFAM: Fmu (Sun) domain protein; KEGG: son:SO2215 sun protein, putative YP_734262.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sdn:Sden_2027 glucose/galactose transporter YP_734263.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: son:SO2213 alpha-glucosidase YP_734264.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2162 TonB dependent receptor-related protein YP_734265.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: sdn:Sden_2031 alpha amylase, catalytic region YP_734266.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: son:SO2156 alpha amylase family protein YP_734267.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2155 glyoxalase family protein YP_734268.1 KEGG: cps:CPS_2680 hypothetical protein YP_734269.1 KEGG: mth:MTH551 DNA helicase II related protein YP_734270.1 KEGG: lpn:lpg0982 hypothetical protein YP_734271.1 KEGG: son:SO2529 hypothetical protein YP_734272.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_734273.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: son:SO2532 methylated-DNA--protein-cysteine methyltransferase, putative YP_734274.1 KEGG: son:SO2533 hypothetical protein YP_734275.1 PFAM: glutamine amidotransferase, class-II; KEGG: son:SO2535 hypothetical amidotransferase YP_734276.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_734277.1 PFAM: sodium/hydrogen exchanger; KEGG: son:SO2537 sodium/hydrogen exchanger family protein YP_734279.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ret:RHE_CH02498 probable transcriptional regulator protein, LysR family YP_734280.1 KEGG: son:SO1412 hypothetical protein YP_734282.1 KEGG: son:SO3623 tetraheme cytochrome c YP_734283.1 TIGRFAM: Twin-arginine translocation pathway signal; flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: son:SO3624 flavocytochrome c flavin subunit YP_734284.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: vpa:VP0028 zinc-binding alcohol dehydrogenase YP_734285.1 KEGG: dar:Daro_0675 PAS:GGDEF; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_734286.1 KEGG: son:SO2557 hypothetical protein YP_734287.1 KEGG: son:SO2559 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_734288.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_734289.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2561 transcriptional regulator, LysR family YP_734290.1 PFAM: Methyltransferase type 11; KEGG: son:SO2562 hypothetical protein YP_734291.1 PFAM: beta-lactamase domain protein; KEGG: son:SO2563 metallo-beta-lactamase family protein YP_734292.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: son:SO2564 transglycosylase, Slt family YP_734293.1 KEGG: son:SO2565 intracellular proteinase inhibitor domain protein YP_734294.1 PFAM: AsmA family protein; KEGG: son:SO2566 AsmA protein YP_734295.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_734296.1 KEGG: son:SO2569 hypothetical protein YP_734297.1 PFAM: protein of unknown function DUF885; KEGG: son:SO2570 lipoprotein, putative YP_734298.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2571 ATP-dependent RNA helicase, DEAD box family YP_734299.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO2572 peptidyl-prolyl cis-trans isomerase B YP_734300.1 PFAM: protein of unknown function UPF0153; KEGG: son:SO2573 hypothetical protein YP_734301.1 KEGG: cps:CPS_3516 putative transglycosylase YP_734302.1 PFAM: protein of unknown function DUF709; KEGG: son:SO2575 hypothetical protein YP_734303.1 blocks the formation of polar Z-ring septums YP_734304.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO2577 septum site-determining protein MinD YP_734305.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_734306.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: son:SO2580 ribonuclease D YP_734307.1 Activates fatty acids by binding to coenzyme A YP_734308.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: son:SO2582 hydrolase, alpha/beta fold family YP_734309.1 KEGG: son:SO2583 hypothetical protein YP_734310.1 KEGG: son:SO2584 hypothetical protein YP_734311.1 KEGG: son:SO2585 hypothetical protein YP_734312.1 PFAM: peptidase M22, glycoprotease; KEGG: son:SO2586 hypothetical protein YP_734313.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_734314.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae YP_734315.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: son:SO2589 isopenicillin-N synthase YP_734316.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_734317.1 KEGG: pae:PA4801 hypothetical protein YP_734319.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: son:SO2208 phosphotyrosine protein phosphatase YP_734320.1 KEGG: sdn:Sden_0075 hypothetical protein YP_734321.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_734322.1 PFAM: diacylglycerol kinase; KEGG: son:SO2203 diacylglycerol kinase YP_734323.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2202 transcriptional regulator, LysR family YP_734324.1 PFAM: protein of unknown function DUF413; KEGG: son:SO2201 hypothetical protein YP_734325.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO2200 ribosomal protein S6 modification protein, putative YP_734326.1 KEGG: son:SO2199 hypothetical protein YP_734327.1 PFAM: peptidase M28; KEGG: son:SO2198 hypothetical aminopeptidase YP_734328.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2197 GGDEF family protein YP_734329.1 TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: son:SO2196 LPXTG-site transpeptidase family protein YP_734330.1 PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: son:SO2195 inter-alpha-trypsin inhibitor domain protein YP_734331.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO2194 OmpA family protein YP_734332.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2193 DNA-binding response regulator YP_734333.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2192 sensor histidine kinase YP_734334.1 catalyzes the formation of L-homocysteine from cystathionine YP_734335.1 PFAM: CreA family protein; KEGG: son:SO2190 creA protein YP_734336.1 KEGG: son:SO2189 conserved hypothetical protein YP_734337.1 PFAM: Polyphosphate kinase; KEGG: vvu:VV10464 polyphosphate kinase YP_734338.1 PFAM: Ppx/GppA phosphatase; KEGG: son:SO2185 exopolyphosphatase YP_734339.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: sdn:Sden_2375 ion transport protein YP_734340.1 KEGG: son:SO2183 hypothetical protein YP_734341.1 PFAM: protein of unknown function DUF991; KEGG: son:SO2182 hypothetical protein YP_734342.1 KEGG: son:SO2181 hypothetical protein YP_734343.1 KEGG: xcv:XCV0313 hypothetical protein YP_734344.1 PFAM: peptidase M23B; KEGG: son:SO2180 peptidase, M23/M37 family YP_734345.1 KEGG: son:SO2179 hypothetical protein YP_734346.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: son:SO2178 cytochrome c551 peroxidase YP_734347.1 PFAM: 37kDa nucleoid-associated protein; KEGG: son:SO2177 hypothetical protein YP_734348.2 PFAM: protein of unknown function DUF1414; KEGG: son:SO2176 hypothetical protein YP_734349.1 PFAM: sulfatase; KEGG: son:SO2175 hypothetical protein YP_734350.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bxe:Bxe_B0715 NADH-flavin oxidoreductase / NADH oxidase familyprotein YP_734351.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sde:Sde_2875 transcriptional regulator, LysR family YP_734352.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2174 cyclic nucleotide phosphodiesterase, putative YP_734353.1 two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase YP_734354.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: eca:ECA2029 nitrate/nitrite sensor kinase YP_734355.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_1843 nitrite extrusion protein YP_734356.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: eci:UTI89_C1421 respiratory nitrate reductase 1 alpha chain YP_734357.1 KEGG: eca:ECA2032 respiratory nitrate reductase 1 beta chain; TIGRFAM: nitrate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_734358.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: eca:ECA2033 respiratory nitrate reductase 1 delta chain YP_734359.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: stt:t1670 respiratory nitrate reductase 1 gamma chain YP_734360.1 KEGG: son:SO2174 cyclic nucleotide phosphodiesterase, putative YP_734362.1 PFAM: transposase IS3/IS911 family protein; KEGG: ilo:IL1626 transposon related ORF, HTH transcriptional regulator YP_734363.1 PFAM: Fimbrial protein; KEGG: bpm:BURPS1710b_2230 type-1 fimbrial protein, A subunit YP_734364.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: xfa:XF0081 outer membrane usher protein precursor YP_734365.1 PFAM: pili assembly chaperone; KEGG: rme:Rmet_4251 pili assembly chaperone YP_734366.1 PFAM: Fimbrial protein; KEGG: reu:Reut_A1694 fimbrial protein YP_734367.1 PFAM: Fimbrial protein; KEGG: bpm:BURPS1710b_2230 type-1 fimbrial protein, A subunit YP_734368.1 PFAM: transposase, IS4 family protein; KEGG: sdn:Sden_3325 transposase, IS4 YP_734369.1 PFAM: Fimbrial protein; KEGG: rme:Rmet_4253 fimbrial protein YP_734370.1 PFAM: EAL domain protein; KEGG: son:SOA0109 hypothetical protein YP_734371.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: sdn:Sden_1435 GGDEF domain YP_734372.1 KEGG: son:SO2024 hypothetical protein YP_734373.1 KEGG: son:SO2022 hypothetical protein YP_734374.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_734375.1 PFAM: PfkB domain protein; KEGG: son:SO2020 inosine-guanosine kinase YP_734376.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_734377.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_734378.1 PFAM: Thioredoxin domain; KEGG: son:SO2017 putative thioredoxin-like protein YP_734379.1 molecular chaperone YP_734380.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_734381.1 PFAM: conserved hypothetical protein 103; KEGG: son:SO2014 conserved hypothetical protein TIGR00103 YP_734382.1 KEGG: son:SO2013 DNA polymerase III, gamma and tau subunits; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_734383.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_734384.1 PFAM: protein of unknown function DUF454; KEGG: son:SO2011 hypothetical protein YP_734385.1 KEGG: son:SO2010 hypothetical protein YP_734386.1 KEGG: son:SO2009 hypothetical protein YP_734387.1 PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: son:SO2008 hypothetical protein YP_734388.1 KEGG: son:SO2007 hypothetical protein YP_734389.1 PFAM: dihydrouridine synthase, DuS; KEGG: son:SO2006 NifR3/Smm1 family protein YP_734390.1 KEGG: son:SO2005 DksA-type zinc finger protein YP_734391.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2469 putative iron complex outermembrane recepter protein YP_734392.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides YP_734393.1 PFAM: phospholipase/Carboxylesterase; KEGG: son:SO1999 phospholipase/carboxylesterase family protein YP_734394.1 KEGG: son:SO1998 hypothetical protein YP_734395.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1997 peptidase, M1 family YP_734396.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1995 peptidyl-prolyl cis-trans isomerase, FkbP family YP_734397.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO1994 membrane-bound lytic transglycolase-related protein YP_734398.1 KEGG: son:SO1991 hypothetical protein YP_734399.1 KEGG: son:SO1990 hypothetical protein YP_734400.1 PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO1989 chemotaxis protein CheV YP_734401.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO1988 hypothetical methyltransferase YP_734402.1 PFAM: peptidase S16, lon domain protein; KEGG: son:SO1987 ATP-dependent protease La (LON) domain protein YP_734403.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO1986 RNA polymerase sigma-70 factor, ECF subfamily YP_734404.1 TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: son:SO1985 transcriptional activator, putative YP_734405.1 KEGG: sdn:Sden_2145 hypothetical protein YP_734406.1 KEGG: ilo:IL0185 hypothetical protein YP_734407.1 KEGG: son:SO1978 hypothetical protein YP_734408.1 PFAM: protein of unknown function DUF307; KEGG: son:SO1977 hypothetical protein YP_734409.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO1976 hydrolase, alpha/beta fold family YP_734410.1 KEGG: son:SO1975 zinc carboxypeptidase-related protein YP_734411.1 KEGG: son:SO1973 hypothetical ABC transporter protein YP_734412.1 KEGG: noc:Noc_2152 integral membrane protein TerC YP_734413.1 activates fatty acids by binding to coenzyme A YP_734414.1 KEGG: son:SO1970 hypothetical protein YP_734415.1 PFAM: protein of unknown function DUF55; KEGG: son:SO1969 hypothetical protein YP_734416.1 KEGG: son:SO1968 hypothetical protein YP_734417.1 PFAM: protein of unknown function DUF124; KEGG: son:SO1966 conserved hypothetical protein TIGR00266 YP_734418.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1965 transcriptional regulator, LysR family YP_734419.1 PFAM: homogentisate 1,2-dioxygenase; KEGG: son:SO1963 homogentisate 1,2-dioxygenase YP_734420.1 KEGG: son:SO1962 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_734421.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; KEGG: dvu:DVU3106 GGDEF domain protein YP_734422.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO1961 maltose O-acetyltransferase YP_734423.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO1954 transporter, LysE family YP_734424.1 PFAM: protein of unknown function DUF482; KEGG: son:SO1953 hypothetical protein YP_734425.1 KEGG: son:SO1952 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_734426.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: cvi:CV3059 hypothetical protein YP_734427.1 PFAM: protein of unknown function DUF1568; KEGG: son:SO3447 hypothetical protein YP_734429.1 KEGG: cps:CPS_1363 putative dipeptidase; TIGRFAM: dipeptidase, putative; PFAM: peptidase M20 YP_734430.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: sdn:Sden_1597 peptidyl-dipeptidase DCP YP_734431.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2707 acetyltransferase, GNAT family YP_734432.1 PFAM: nitroreductase; KEGG: son:SO2708 nitroreductase family protein YP_734433.1 PFAM: DoxX family protein; KEGG: son:SO2710 hypothetical protein YP_734434.1 KEGG: son:SO2711 hypothetical protein YP_734435.1 PFAM: aminoglycoside phosphotransferase; KEGG: son:SO2712 hypothetical protein YP_734436.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: son:SO2713 transporter, putative YP_734437.1 KEGG: son:SO2714 hypothetical protein YP_734438.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2715 TonB-dependent receptor YP_734439.1 PFAM: protein of unknown function DUF1425; KEGG: son:SO2720 hypothetical protein YP_734440.1 PFAM: thioesterase superfamily protein; KEGG: son:SO2721 hypothetical protein YP_734441.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO2722 hypothetical protein YP_734442.1 PFAM: histidine triad (HIT) protein; KEGG: son:SO2723 HIT family protein YP_734443.1 PFAM: peptidase M61 domain protein; KEGG: son:SO2724 protease, putative YP_734444.1 PFAM: regulatory protein, LuxR; KEGG: son:SO2725 transcriptional regulator, LuxR family YP_734445.1 PFAM: cytochrome B561; KEGG: son:SO2726 cytochrome b, putative YP_734446.1 KEGG: son:SO2727 cytochrome c3 YP_734447.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_4326 AMP-dependent synthetase and ligase YP_734448.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO1899 hypothetical protein YP_734449.1 PFAM: regulatory protein, MerR; KEGG: son:SO1898 transcriptional regulator, putative YP_734450.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO1897 isovaleryl-CoA dehydrogenase YP_734451.1 PFAM: carboxyl transferase; KEGG: son:SO1896 3-methylcrotonyl-CoA carboxylase beta subunit YP_734452.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO1895 enoyl-CoA hydratase YP_734453.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO1894 3-methylcrotonyl-CoA carboxylase alpha subunit YP_734454.1 PFAM: pyruvate carboxyltransferase; KEGG: son:SO1893 hydroxymethylglutaryl-CoA lyase YP_734455.1 KEGG: son:SO1892 acetate CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_734456.1 KEGG: son:SO1891 3-oxoacid CoA-transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_734458.1 KEGG: sdn:Sden_3728 cadherin YP_734459.1 PFAM: ThiJ/PfpI domain protein; KEGG: son:SO1887 hypothetical protein YP_734460.1 KEGG: son:SO1886 hypothetical protein YP_734461.1 PFAM: protein of unknown function DUF81; KEGG: son:SO1884 membrane protein, putative YP_734462.1 PFAM: Negative transcriptional regulator; KEGG: sdn:Sden_3742 negative transcriptional regulator YP_734463.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1883 acetyltransferase, GNAT family YP_734464.1 PFAM: transposase IS200-family protein; KEGG: vch:VCA0275 IS1004 transposase YP_734465.1 PFAM: acriflavin resistance protein; KEGG: son:SO1882 AcrB/AcrD/AcrF family protein YP_734466.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1881 HlyD family-related protein YP_734467.1 PFAM: NlpBDapX family lipoprotein; KEGG: son:SO1880 lipoprotein-34 NlpB YP_734468.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_734469.1 KEGG: son:SO1878 glycine cleavage system transcriptional repressor, putative YP_734470.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine YP_734471.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO2865 L-lysine exporter, putative YP_734472.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_734473.1 PFAM: protein of unknown function UPF0118; KEGG: son:SO2867 permease PerM, putative YP_734474.1 PFAM: SirA family protein; KEGG: son:SO2868 hypothetical protein YP_734475.1 PFAM: peptidase M48, Ste24p; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO2869 hypothetical protein YP_734476.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: son:SO2871 arsenate reductase, putative YP_734477.1 KEGG: son:SO2872 hypothetical protein YP_734478.1 KEGG: son:SO2876 hypothetical protein YP_734479.1 putative metalloprotease YP_734480.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family YP_734481.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_734482.1 KEGG: son:SO2735 hypothetical protein YP_734483.1 KEGG: son:SO2736 hypothetical protein YP_734484.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_734485.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2738 biotin synthesis protein BioC YP_734486.1 PFAM: aminotransferase, class I and II; aminotransferase class-III; KEGG: son:SO2739 8-amino-7-oxononanoate synthase YP_734487.1 KEGG: son:SO2740 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_734488.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: son:SO2741 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_734489.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2742 sensor histidine kinase/response regulator YP_734490.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_734491.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO2744 helicase YP_734492.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase YP_734493.1 KEGG: pha:PSHAa0696 hypothetical protein YP_734494.1 KEGG: son:SO2746 hypothetical protein YP_734495.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO2747 peptidoglycan-associated lipoprotein YP_734496.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_734497.1 PFAM: TolA family protein; KEGG: son:SO2749 tolA protein YP_734498.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO2750 tolr protein YP_734499.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO2751 MotA/TolQ/ExbB proton channel family protein YP_734500.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: son:SO2752 conserved hypothetical protein TIGR00051 YP_734501.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO2753 prolyl endopeptidase YP_734502.1 PFAM: OmpA/MotB domain protein; KEGG: sdn:Sden_1398 OmpA/MotB YP_734503.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) YP_734504.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sdn:Sden_2091 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_734505.1 PFAM: Gluconate transporter; Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO2757 membrane protein, putative YP_734506.1 PFAM: RDD domain containing protein; KEGG: cac:CAC2792 uncharacterized conserved membrane protein, YXAI B.subtilis homolog YP_734507.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_734508.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_734509.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_734510.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO2762 nagD protein YP_734511.1 PFAM: peptidase M20; peptidase M28; KEGG: son:SO2766 hypothetical protein YP_734512.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP YP_734513.1 PFAM: Patatin; KEGG: pha:PSHAb0541 putative hydrolase similar to YjjU YP_734514.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcb:XC_2846 iron receptor YP_734515.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: son:SO2768 acyl-CoA dehydrogenase family protein YP_734516.1 PFAM: Aldose 1-epimerase; KEGG: son:SO2769 hypothetical protein YP_734517.1 PFAM: Integrase, catalytic region; KEGG: pcr:Pcryo_0715 Integrase, catalytic region YP_734518.1 KEGG: dde:Dde_2987 transposase YP_734519.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: son:SO2771 2-hydroxy-3-oxopropionate reductase YP_734520.1 PFAM: thioesterase superfamily protein; KEGG: son:SO2772 cytosolic long-chain acyl-CoA thioester hydrolase family protein YP_734521.1 KEGG: son:SO2773 hypothetical protein YP_734522.1 PFAM: beta-ketoacyl synthase; KEGG: son:SO2774 3-oxoacyl-(acyl-carrier-protein) synthase II YP_734523.1 carries the fatty acid chain in fatty acid biosynthesis YP_734524.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; 3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: son:SO2776 3-oxoacyl-[acyl-carrier protein] reductase YP_734525.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: son:SO2777 malonyl CoA-acyl carrier protein transacylase YP_734526.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_734527.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_734528.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_734529.1 PFAM: protein of unknown function DUF177; KEGG: son:SO2781 hypothetical protein YP_734530.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO2782 maf protein, putative YP_734531.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sdn:Sden_2300 HAD-superfamily hydrolase subfamily IA, variant 3 YP_734532.1 KEGG: sdn:Sden_2301 pseudouridine synthase, RluD; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_734533.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: son:SO2785 ribonuclease E YP_734534.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sdn:Sden_2303 sulphate transporter YP_734535.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: son:SO2787 cold shock domain family protein YP_734536.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth YP_734537.1 KEGG: son:SO2789 hypothetical protein YP_734538.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates YP_734539.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_734540.1 PFAM: protein of unknown function DUF1289; KEGG: son:SO2792 hypothetical protein YP_734541.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2793 glyoxalase family protein YP_734542.1 KEGG: son:SO2794 hypothetical protein YP_734543.1 KEGG: son:SO2795 glyoxalase family protein YP_734544.1 PFAM: protein of unknown function DUF748; KEGG: son:SO2796 hypothetical protein YP_734545.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO2797 hypothetical protein YP_734546.1 KEGG: son:SO2798 hypothetical protein YP_734547.1 KEGG: son:SO2799 lipoprotein, putative YP_734548.1 PFAM: protein of unknown function DUF343; KEGG: son:SO2800 hypothetical protein YP_734549.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_734550.1 KEGG: son:SO2802 ABC transporter, ATP-binding protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_734551.1 TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: son:SO2803 DNA internalization-related competence protein ComEC/Rec2 YP_734552.1 KEGG: son:SO2804 hypothetical protein YP_734553.1 PFAM: NnrS family protein; KEGG: son:SO2805 putative uncharacterized protein involved in response to NO YP_734554.1 PFAM: phosphate-starvation-inducible E; KEGG: son:SO2806 hypothetical protein YP_734555.1 PFAM: type IV pilus assembly PilZ; KEGG: son:SO2807 hypothetical protein YP_734556.1 KEGG: son:SO2808 hypothetical protein YP_734557.1 KEGG: son:SO2809 RepA domain protein YP_734558.1 KEGG: son:SO2821 hypothetical protein YP_734559.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: son:SO2822 sensor histidine kinase YP_734560.1 unknown function; when overproduced it confers drug-resistance YP_734561.1 PFAM: carbon starvation protein CstA; KEGG: son:SO2823.1 hypothetical carbon starvation protein A YP_734562.1 KEGG: son:SO2827 hypothetical protein YP_734563.1 KEGG: pha:PSHAa2586 L-sorbosone dehydrogenase (SNDH) YP_734564.1 KEGG: son:SO2829 hypothetical protein YP_734565.1 KEGG: son:SO2830 hypothetical protein YP_734566.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate YP_734567.1 KEGG: son:SO2832 hypothetical protein YP_734568.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions YP_734569.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_734570.1 KEGG: son:SO2835 hypothetical protein YP_734571.1 PFAM: Patatin; KEGG: son:SO2836 hypothetical protein YP_734572.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2838 ATP-dependent RNA helicase, DEAD box family YP_734573.1 KEGG: son:SO2839 hypothetical protein YP_734574.1 PFAM: protein of unknown function DUF45; KEGG: son:SO2840 hypothetical protein YP_734575.1 KEGG: son:SO2841 hypothetical protein YP_734576.1 PFAM: peptidase M23B; Opacity-associated protein A; KEGG: son:SO2842 peptidase, M23/M37 family YP_734577.1 PFAM: SMC domain protein; KEGG: son:SO2843 exonuclease SbcC, putative YP_734578.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: son:SO2844 exonuclease SbcD, putative YP_734579.1 PFAM: protein of unknown function DUF81; KEGG: son:SO2846 hypothetical protein YP_734580.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2847 transcriptional regulator, LysR family YP_734581.1 PFAM: protein of unknown function DUF1260; KEGG: son:SO1836 hypothetical protein YP_734582.1 PFAM: RNA-binding S4 domain protein; KEGG: sdn:Sden_2510 RNA-binding S4 YP_734583.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1834 acetyltransferase, GNAT family YP_734584.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1832 peptidyl-prolyl cis-trans isomerase C YP_734585.1 PFAM: protein of unknown function DUF885; KEGG: son:SO1831 hypothetical protein YP_734586.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1830 GGDEF domain protein YP_734587.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO1829 TPR domain protein YP_734588.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO1828 TonB2 protein YP_734589.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO1827 TonB system transport protein ExbD2 YP_734590.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: sdn:Sden_2423 MotA/TolQ/ExbB proton channel YP_734591.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO1825 MotA/TolQ/ExbB proton channel family protein YP_734592.1 KEGG: sdn:Sden_2425 hypothetical protein YP_734593.1 PFAM: transposase, IS4 family protein; KEGG: son:SO4437 ISSod3, transposase YP_734594.1 PFAM: transposase IS200-family protein; KEGG: vch:VCA0275 IS1004 transposase YP_734595.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_3757 TonB-dependent receptor YP_734596.1 PFAM: porin, Gram-negative type; KEGG: son:SO1821 outer membrane porin, putative YP_734597.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C YP_734598.1 helicase involved in DNA repair and perhaps also replication YP_734599.1 PFAM: protein of unknown function DUF81; KEGG: son:SO1818 hypothetical protein YP_734600.1 KEGG: son:SO1817 primosomal replication protein N'', putative YP_734601.1 KEGG: son:SO1816 hypothetical protein YP_734602.1 PFAM: histone deacetylase superfamily; KEGG: son:SO1815 histone deacetylase/AcuC/AphA family protein YP_734603.1 KEGG: son:SO1814 hypothetical protein YP_734604.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: son:SO1813 DNA-binding protein, putative YP_734605.1 KEGG: son:SO1812 methionine gamma-lyase; TIGRFAM: methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_734606.1 PFAM: conserved hypothetical protein 1620; KEGG: son:SO1811 hypothetical protein YP_734607.1 PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: son:SO1810 hypothetical ATPase YP_734608.1 PFAM: PspC domain protein; KEGG: son:SO1809 phage shock protein C YP_734609.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding YP_734610.1 PFAM: PspA/IM30 family protein; KEGG: son:SO1807 phage shock protein A YP_734611.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO1806 psp operon transcriptional activator YP_734612.1 PFAM: extracellular solute-binding protein, family 5; KEGG: son:SO1805 peptide ABC transporter, periplasmic peptide-binding protein YP_734613.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1804 peptide ABC transporter, permease protein YP_734614.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1803 peptide ABC transporter, permease protein YP_734615.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; KEGG: son:SO1802 peptide ABC transporter, ATP-binding protein YP_734616.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein YP_734617.2 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity YP_734618.1 TIGRFAM: Molybdenum-pterin binding; PFAM: TOBE domain protein; KEGG: mma:MM0224 molybdenum-pterin-binding-protein YP_734619.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1798 peptidyl-prolyl cis-trans isomerase D YP_734620.1 PFAM: histone family protein DNA-binding protein; KEGG: son:SO1797 DNA-binding protein, HU family YP_734621.1 KEGG: son:SO1796 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_734622.1 binds and unfolds substrates as part of the ClpXP protease YP_734623.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_734624.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_734625.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_734626.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_734627.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO1790 peptidyl-prolyl cis-trans isomerase B YP_734628.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine YP_734629.1 PFAM: tRNA--hydroxylase; KEGG: son:SO1788 tRNA hydroxylase YP_734630.1 PFAM: protein of unknown function DUF1282; KEGG: son:SO1787 hypothetical protein YP_734631.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_734632.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; Miro domain protein; KEGG: son:SO1784 ferrous iron transport protein B YP_734633.1 PFAM: FeoA family protein; KEGG: son:SO1783 ferrous iron transport protein A YP_734634.1 TIGRFAM: cytochrome C family protein; KEGG: son:SO1782 decaheme cytochrome c MtrD YP_734635.1 KEGG: son:SO1781 outer membrane protein, putative YP_734636.1 KEGG: son:SO1780 decaheme cytochrome c MtrF YP_734637.1 KEGG: son:SO1779 decaheme cytochrome c YP_734638.1 KEGG: son:SO1778 decaheme cytochrome c YP_734639.1 TIGRFAM: cytochrome C family protein; KEGG: son:SO1777 decaheme cytochrome c MtrA YP_734640.1 KEGG: son:SO1776 outer membrane protein precursor MtrB YP_734642.1 KEGG: son:SO1775 phage SPO1 DNA polymerase domain protein YP_734643.1 PFAM: peptidase M4, thermolysin; Propeptide, PepSY amd peptidase M4; KEGG: pae:PA3724 elastase LasB YP_734644.1 PFAM: sugar diacid recognition domain protein; KEGG: son:SO1774 hypothetical sugar diacid utilization regulator YP_734645.1 PFAM: Catalase domain protein; KEGG: son:SO1771.2 hypothetical catalase YP_734646.1 PFAM: Gluconate transporter; Citrate transporter; KEGG: son:SO1771 permease, GntP family YP_734647.1 KEGG: son:SO1770 glycerate kinase; TIGRFAM: glycerate kinase; PFAM: glycerate kinase YP_734648.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: son:SO1769 glutamate decarboxylase, putative YP_734649.1 KEGG: bbr:BB0911 putative serine protease YP_734650.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: bbr:BB0910 putative ATPase YP_734651.1 KEGG: sdn:Sden_0571 hypothetical protein YP_734654.1 KEGG: son:SO1763 streptogramin A acetyl transferase YP_734655.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO1762 transcriptional regulator, AraC/XylS family YP_734656.1 PFAM: AzlC family protein; KEGG: son:SO1760 AzlC family protein YP_734657.1 PFAM: branched-chain amino acid transport; KEGG: son:SO1759 hypothetical protein YP_734658.1 PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_3038 multiple antibiotic resistance (MarC)-related proteins YP_734659.1 KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_734660.1 PFAM: ROK family protein; KEGG: yps:YPTB2439 hypothetical protein YP_734661.1 PFAM: sugar isomerase (SIS); KEGG: vvy:VVA1515 predicted phosphosugar isomerase YP_734662.1 PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; KEGG: ecj:JW3101 tagatose 6-phosphate aldolase 1, kbaZ subunit YP_734663.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase domain protein; KEGG: son:SO3120 oxidoreductase, Gfo/Idh/MocA family YP_734664.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: ppr:PBPRB0140 putative DeoR-family regulatory protein YP_734665.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_0238 TonB-dependent receptor YP_734666.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: son:SO1758 hypothetical protein YP_734667.1 PFAM: transcription activator, effector binding; KEGG: son:SO1757 hypothetical protein YP_734668.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO1756 glyoxalase family protein YP_734669.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: son:SO1755 phosphoglucomutase/phosphomannomutase family protein YP_734670.1 KEGG: son:SO1753 hypothetical protein YP_734671.1 PFAM: Integral membrane protein TerC; KEGG: son:SO1747 membrane protein, putative YP_734672.1 KEGG: son:SO1746 hypothetical protein YP_734673.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO1745 3-beta hydroxysteroid dehydrogenase/isomerase family protein YP_734674.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis YP_734675.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO1743 hydrolase, alpha/beta hydrolase fold family YP_734676.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_734677.1 KEGG: son:SO1741 hypothetical protein YP_734678.1 PFAM: protein of unknown function DUF1289; KEGG: son:SO1739 hypothetical protein YP_734679.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: son:SO1738 hypothetical protein YP_734680.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: sdn:Sden_1362 choline/carnitine/betaine transport YP_734681.1 KEGG: son:SO1736 hypothetical protein YP_734682.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO1734 glyoxalase family protein YP_734683.1 PFAM: protein of unknown function DUF1568; KEGG: son:SO1546 hypothetical protein YP_734684.1 KEGG: son:SO4661 hypothetical protein YP_734685.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon YP_734686.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_734687.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1724 phosphate ABC transporter, permease protein, putative YP_734688.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1723 phosphate ABC transporter, permease protein, putative YP_734689.1 PFAM: amino acid-binding ACT domain protein; KEGG: son:SO1722 ACT domain protein YP_734690.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: sdn:Sden_1682 protein of unknown function DUF6, transmembrane YP_734691.1 PFAM: putative esterase; KEGG: ilo:IL2526 predicted hydrolase of the alpha/beta superfamily YP_734692.1 KEGG: son:SO1718 hypothetical protein YP_734693.1 KEGG: bbr:BB1298 hypothetical protein YP_734694.1 KEGG: son:SO1717 hypothetical protein YP_734695.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO1716 transporter, LysE family YP_734696.1 PFAM: protein of unknown function DUF1415; KEGG: son:SO1715 hypothetical protein YP_734697.1 KEGG: son:SO1710 hypothetical protein YP_734698.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: sdn:Sden_3290 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_734700.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: son:SO1708 4-hydroxybutyrate coenzyme A transferase YP_734701.1 PFAM: ABC-2 type transporter; KEGG: son:SO1707 ABC transporter, permease protein, putative YP_734702.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRA2312 putative ABC-type multidrug transport system, ATPase component YP_734703.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO1705 putative HlyD family secretion protein YP_734704.1 PFAM: regulatory protein, TetR; KEGG: ppr:PBPRA0420 putative transcriptional regulator YP_734705.1 KEGG: son:SO1702 hypothetical protein YP_734706.1 KEGG: son:SO1701 hypothetical protein YP_734707.1 KEGG: son:SO1700 hypothetical protein YP_734708.1 PFAM: transcriptional regulator domain protein; KEGG: son:SO1699 transcriptional regulator YP_734709.1 KEGG: son:SO1698 hypothetical protein YP_734710.1 KEGG: son:SO1695 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_734711.1 PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: son:SO1694 FAD-binding protein YP_734712.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1692 hypothetical protein YP_734713.1 PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: son:SO1691 lipoprotein Blc YP_734714.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1690 ABC transporter, ATP-binding protein YP_734715.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: son:SO1689 cation transport ATPase, E1-E2 family YP_734716.1 PFAM: regulatory protein, MerR; KEGG: son:SO1687 transcriptional regulator, MerR family YP_734717.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1686 prolyl oligopeptidase family protein YP_734718.1 KEGG: son:SO1685 hypothetical protein YP_734719.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_734720.1 KEGG: son:SO1682 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding YP_734721.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO1681 enoyl-CoA hydratase/isomerase family protein YP_734722.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_734723.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO1679 acyl-CoA dehydrogenase family protein YP_734724.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: son:SO1678 methylmalonate-semialdehyde dehydrogenase YP_734725.1 KEGG: son:SO1677 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase YP_734726.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_734727.1 KEGG: son:SO1675 hypothetical protein YP_734728.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO1674 short chain dehydrogenase family protein YP_734729.1 receptor for colicin S4 YP_734730.1 PFAM: protein of unknown function DUF925; KEGG: son:SO1672 hypothetical protein YP_734731.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO1671 glutathione S-transferase family protein YP_734732.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1670 fumarylacetoacetate hydrolase family protein YP_734733.1 PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: AAA ATPase; KEGG: son:SO1669 transcriptional regulatory protein TyrR YP_734734.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_734735.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_734736.1 KEGG: son:SO1665 UTP--glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase YP_734737.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO1664 UDP-glucose 4-epimerase YP_734738.1 TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1663 ferredoxin-type protein NapF YP_734739.1 PFAM: protein of unknown function DUF583; KEGG: son:SO1662 hypothetical Ccm2-related protein YP_734740.1 PFAM: regulatory protein, LysR; KEGG: son:SO1661 transcriptional regulator, LysR family YP_734741.1 KEGG: son:SO1659 decaheme cytochrome c YP_734742.1 KEGG: son:SO1658 hypothetical protein YP_734743.1 PFAM: protein of unknown function DUF218; KEGG: son:SO1657 hypothetical protein YP_734744.1 catalyzes phosphorylation of fructose; cytosolic enzyme YP_734745.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: son:SO1655 cysQ protein YP_734746.1 KEGG: son:SO1653 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase YP_734747.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: son:SO1652 putative histidinol phosphatase YP_734748.1 PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD/DEAH box helicase domain protein; KEGG: son:SO1651 Snf2 family protein YP_734749.1 PFAM: protein of unknown function DUF885; KEGG: cps:CPS_4234 hypothetical protein YP_734750.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: son:SO1648 cold shock domain family protein YP_734751.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: son:SO1647 glutathione-regulated potassium-efflux system protein KefB, putative YP_734752.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1646 GGDEF family protein YP_734753.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase-like; PFAM: PP-loop domain protein; KEGG: son:SO1645 cell cycle protein MesJ YP_734754.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_734755.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_734756.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_734757.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_734758.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_734759.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_734760.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: son:SO1638 outer membrane protein OmpH YP_734761.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO1637 bacterial surface antigen YP_734762.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: son:SO1636 membrane-associated zinc metalloprotease, putative YP_734763.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_734764.1 PFAM: phosphatidate cytidylyltransferase; KEGG: son:SO1634 phosphatidate cytidylyltransferase YP_734765.1 KEGG: son:SO1633 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_734766.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_734767.1 Catalyzes the phosphorylation of UMP to UDP YP_734768.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_734769.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_734770.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_734771.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_734772.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_734773.1 KEGG: sdn:Sden_1550 hypothetical protein YP_734774.1 PFAM: CBS domain containing protein; GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mag:amb0553 response regulator YP_734775.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_734776.1 TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: son:SO1623 PTS system, glucose-specific IIBC component YP_734777.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_734778.1 PFAM: pseudouridine synthase; KEGG: sdn:Sden_1546 pseudouridylate synthase YP_734779.1 PFAM: protein of unknown function DUF446; KEGG: son:SO1619 hypothetical protein YP_734780.1 KEGG: son:SO1618 hypothetical protein YP_734781.1 KEGG: son:SO1617 hypothetical protein YP_734782.1 KEGG: son:SO1615 hypothetical protein YP_734783.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1614 acetyltransferase, GNAT family YP_734784.1 KEGG: son:SO1613 hypothetical protein YP_734785.1 KEGG: son:SO1612 hypothetical protein YP_734786.1 KEGG: son:SO1611 hypothetical protein YP_734787.1 KEGG: son:SO1610 hypothetical protein YP_734788.1 putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function YP_734789.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_734790.1 PFAM: SpoOM family protein; KEGG: pha:PSHAa0857 SpoOM-related protein YP_734791.1 KEGG: son:SO1605 lipoprotein, putative YP_734792.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: son:SO1604 4'-phosphopantetheinyl transferase family protein YP_734793.1 KEGG: son:SO1603 transcriptional regulator, putative YP_734794.1 PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: ppr:PBPRA1460 omega-3 polyunsaturated fatty acid synthase PfaA YP_734795.1 KEGG: sdn:Sden_2628 omega-3 polyunsaturated fatty acid synthase PfaB YP_734796.1 PFAM: beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: son:SO1599 multi-domain beta-ketoacyl synthase YP_734797.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: son:SO1597 hypothetical protein YP_734798.1 KEGG: rfr:Rfer_1414 hypothetical protein YP_734799.1 PFAM: protein of unknown function DUF1328; KEGG: sdn:Sden_3712 protein of unknown function DUF1328 YP_734800.1 KEGG: sdn:Sden_3711 hypothetical protein YP_734801.1 PFAM: Dual specificity protein phosphatase; diacylglycerol kinase, catalytic region; SMART: protein tyrosine phosphatase, catalytic region; KEGG: sdn:Sden_3710 diacylglycerol kinase, catalytic region YP_734802.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: sdn:Sden_3709 sigma-54 factor, interaction region YP_734803.1 KEGG: sdn:Sden_3708 hypothetical protein YP_734804.1 PFAM: transport-associated; KEGG: sdn:Sden_3707 transport-associated YP_734805.1 KEGG: son:SO1590 hypothetical protein YP_734806.1 KEGG: son:SO1589 hypothetical protein YP_734807.1 PFAM: Phosphoglycerate mutase; KEGG: vvy:VVA1671 fructose-2;6-bisphosphatase YP_734809.1 PFAM: porin, Gram-negative type; KEGG: son:SO3896 outer membrane porin, putative YP_734810.1 PFAM: major facilitator superfamily MFS_1; KEGG: vpa:VPA0824 putative regulatory protein UhpC YP_734811.1 KEGG: vpa:VPA0825 putative phosphoglycerate transport regulatory protein PgtC YP_734812.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ppr:PBPRA2770 hypothetical phosphoglycerate transport regulatory protein PgtB YP_734813.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; KEGG: ppr:PBPRA2771 phosphoglycerate transport system transcription regulator YP_734814.1 KEGG: son:SO1588 hypothetical protein YP_734815.1 KEGG: son:SO1587 hypothetical protein YP_734816.1 PFAM: cyclic nucleotide-binding; KEGG: son:SO1586 hypothetical cyclic nucleotide-binding domain protein YP_734817.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1585 fumarylacetoacetate hydrolase family protein YP_734818.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO1583 hypothetical protein YP_734819.1 PFAM: regulatory protein, MarR; KEGG: son:SO1582 transcriptional regulator, MarR family YP_734820.1 PFAM: PhnA protein; KEGG: son:SO1581 PhnA protein YP_734821.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO1579 hypothetical protein YP_734822.1 PFAM: regulatory protein, TetR; KEGG: son:SO1578 transcriptional regulator, TetR family YP_734823.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO1577 glutathione S-transferase family protein YP_734824.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO1576 glutathione S-transferase family protein YP_734825.1 PFAM: Fmu (Sun) domain protein; KEGG: son:SO1575 NOL1/NOP2/sun family putative RNA methylase YP_734826.1 KEGG: son:SO1572 hypothetical protein YP_734827.1 KEGG: son:SO1571 hypothetical protein YP_734828.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: son:SO1570 GGDEF domain protein YP_734829.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1569 integral membrane domain protein YP_734830.1 PFAM: YfaZ family protein; KEGG: son:SO1568 hypothetical protein YP_734831.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1566 acetyltransferase, GNAT family YP_734832.1 PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO1565 magnesium transporter, putative YP_734833.1 PFAM: glutathione peroxidase; KEGG: son:SO1563 glutathione peroxidase YP_734834.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1561 peptidase, M1 family YP_734835.1 TIGRFAM: phosphate binding protein; KEGG: son:SO1560 phosphate-binding protein YP_734836.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: son:SO1559 phosphate regulon sensor protein PhoR YP_734837.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1558 phosphate regulon response regulator PhoB YP_734838.1 PFAM: porin, Gram-negative type; KEGG: son:SO1557 outer membrane porin, putative YP_734839.1 Required for efficient pilin antigenic variation YP_734840.1 PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: sdn:Sden_2554 peptidase M61 YP_734841.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO1552 TPR domain protein YP_734842.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1551 GGDEF domain protein YP_734843.1 PFAM: conserved hypothetical protein 730; KEGG: son:SO1550 hypothetical protein YP_734844.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups YP_734845.1 KEGG: son:SO1548 hypothetical protein YP_734846.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ece:Z1444 putative serine/threonine kinase encoded by bacteriophage BP-933W YP_734847.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1539 hypothetical protein YP_734848.1 catalyzes the formation of 2-oxoglutarate from isocitrate YP_734849.1 KEGG: son:SO1536 hypothetical protein YP_734850.1 PFAM: protein of unknown function DUF423; KEGG: son:SO1535 hypothetical protein YP_734851.1 KEGG: son:SO1534 hypothetical protein YP_734852.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_734853.1 KEGG: son:SO1532 hypothetical protein YP_734854.1 Required for the synthesis of the thiazole moiety YP_734855.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella YP_734856.1 Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_734857.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: sdn:Sden_2569 exodeoxyribonuclease VII, small subunit YP_734858.1 PFAM: Polyprenyl synthetase; KEGG: son:SO1526 geranyltranstransferase YP_734859.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_734860.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_734861.1 catalyzes the phosphorylation of NAD to NADP YP_734862.1 PFAM: L-lactate permease; KEGG: son:SO1522 L-lactate permease, putative YP_734863.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: son:SO1521 iron-sulfur cluster-binding protein YP_734864.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: son:SO1520 hypothetical protein YP_734865.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1519 iron-sulfur cluster-binding protein YP_734866.1 PFAM: protein of unknown function DUF162; KEGG: son:SO1518 hypothetical protein YP_734867.1 PFAM: protein of unknown function DUF1428; KEGG: sdn:Sden_1972 protein of unknown function DUF1428 YP_734869.1 PFAM: protein of unknown function UPF0118; KEGG: mca:MCA0120 hypothetical protein YP_734870.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: reu:Reut_A1740 RND efflux system, outer membrane lipoprotein, NodT YP_734871.1 PFAM: secretion protein HlyD family protein; KEGG: rme:Rmet_1711 secretion protein HlyD YP_734872.1 KEGG: pfo:Pfl_2137 hypothetical protein YP_734873.1 PFAM: Ion transport 2 domain protein; KEGG: rme:Rmet_1713 ion transport 2 YP_734874.1 KEGG: son:SO1507 hypothetical protein YP_734875.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO1506 MATE efflux family protein YP_734876.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1505 transporter, putative YP_734877.1 KEGG: son:SO1504 hypothetical protein YP_734878.1 KEGG: son:SO1503 ABC transporter, periplasmic substrate-binding protein, putative YP_734879.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: son:SO1502 cobalamin synthesis protein/P47K family protein YP_734880.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1501 ATP-dependent RNA helicase, DEAD box family YP_734881.1 KEGG: son:SO1500 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type, transmembrane region; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_734882.1 PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: son:SO1499 glycogen synthase YP_734883.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_734884.1 KEGG: son:SO1496 glycogen phosphorylase family protein; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35 YP_734885.1 KEGG: son:SO1495 glycogen operon protein; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_734886.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_734887.1 KEGG: son:SO1493 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77 YP_734888.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO1492 peptidyl-prolyl cis-trans isomerase, cyclophilin family YP_734889.1 PFAM: regulatory protein, MarR; KEGG: sdn:Sden_0718 regulatory protein, MarR YP_734890.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO1490 alcohol dehydrogenase II YP_734891.1 KEGG: son:SO1489 hypothetical protein YP_734892.1 KEGG: son:SO1487 hypothetical protein YP_734893.1 PFAM: thioesterase superfamily protein; KEGG: son:SO1486 cytosolic long-chain acyl-CoA thioester hydrolase family protein YP_734894.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: son:SO1484 isocitrate lyase YP_734895.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_734896.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1482 TonB-dependent receptor, putative YP_734897.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: son:SO1481 glutathione-regulated potassium-efflux system protein YP_734898.1 KEGG: son:SO1480 GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein YP_734899.1 KEGG: son:SO1479 hypothetical protein YP_734900.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO1478 methylase, putative YP_734901.1 PFAM: SmpA/OmlA domain protein; KEGG: son:SO1476 small protein A YP_734902.1 PFAM: protein of unknown function UPF0125; KEGG: son:SO1475 hypothetical protein YP_734903.1 PFAM: cyclase/dehydrase; KEGG: son:SO1474 hypothetical protein YP_734904.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_734905.1 PFAM: phage integrase family protein; KEGG: vch:VC0847 integrase, phage family YP_734906.1 PFAM: type III restriction enzyme, res subunit; KEGG: tbd:Tbd_2275 hypothetical protein YP_734907.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: tbd:Tbd_2276 adenine specific DNA methylase YP_734908.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: vfi:VFA0534 hypothetical protein YP_734909.1 PFAM: Resolvase, N-terminal domain protein; KEGG: ppr:PBPRA0888 hypothetical resolvase YP_734910.1 PFAM: phage integrase family protein; KEGG: ctc:CTC01567 DNA integration/recombination protein YP_734911.1 KEGG: rde:RD1_2231 hypothetical protein YP_734912.1 PFAM: Prophage CP4-57 regulatory; KEGG: vvy:VV0262 prophage regulatory protein YP_734913.1 KEGG: eca:ECA2751 putative phage-related protein YP_734914.1 KEGG: son:SO1425 hypothetical protein YP_734915.1 KEGG: son:SO1424 hypothetical protein YP_734916.1 PFAM: Heavy metal transport/detoxification protein; KEGG: son:SO1407 mercuric transport periplasmic protein MerP, putative YP_734917.1 KEGG: son:SO1406 mercuric transport protein MerT, putative YP_734918.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: transglutaminase domain protein; KEGG: son:SO1405 transglutaminase family protein YP_734919.1 KEGG: vpa:VP2175 putative HAAAP family transport protein YP_734920.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: son:SO1404 endoribonuclease L-PSP, putative YP_734921.1 PFAM: protein of unknown function DUF1063; KEGG: son:SO1403 hypothetical protein YP_734922.1 PFAM: YheO domain protein; KEGG: son:SO1402 hypothetical protein YP_734923.1 KEGG: son:SO1401 hypothetical protein YP_734924.1 PFAM: protein of unknown function DUF368; KEGG: son:SO1400 hypothetical protein YP_734925.1 KEGG: sdn:Sden_2841 hypothetical protein YP_734926.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: son:SO1397 cytosine deaminase YP_734927.1 PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: son:SO1396 hypothetical protein YP_734928.1 PFAM: protein of unknown function DUF1294; KEGG: son:SO1395 membrane protein,putative YP_734929.1 PFAM: regulatory protein, TetR; KEGG: son:SO1393 transcriptional regulator, TetR family YP_734930.1 PFAM: HPP family protein; KEGG: son:SO1392 hypothetical protein YP_734931.1 PFAM: short chain fatty acid transporter; KEGG: son:SO1391 short-chain fatty acids transporter YP_734932.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1390 peptidyl-prolyl cis-trans isomerase, FKBP-type YP_734933.1 KEGG: sdn:Sden_2136 chitinase; PFAM: PKD domain containing protein; glycoside hydrolase, family 18; Carbohydrate-binding family V/XII; Chitinase A N-terminal domain protein; SMART: chitinase II YP_734934.1 PFAM: ROK family protein; KEGG: son:SO1389 ROK family protein YP_734935.1 PFAM: peptidase M24; KEGG: son:SO1388 aminopeptidase P, putative YP_734936.1 KEGG: son:SO1385 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_734937.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1383 ATP-dependent RNA helicase, DEAD box family YP_734938.1 KEGG: son:SO1382 hypothetical protein YP_734939.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO1381 hypothetical protein YP_734940.1 KEGG: son:SO1380 hypothetical protein YP_734941.1 KEGG: sdn:Sden_0883 hypothetical protein YP_734942.1 KEGG: son:SO1379 hypothetical protein YP_734943.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: son:SO1378 ThiJ/PfpI family protein YP_734944.1 PFAM: band 7 protein; KEGG: son:SO1377 hypothetical protein YP_734945.1 PFAM: protein of unknown function DUF1449; KEGG: son:SO1376 hypothetical protein YP_734946.1 KEGG: eli:ELI_10435 hypothetical protein YP_734947.1 PFAM: peptidase M32, carboxypeptidase Taq metallopeptidase; KEGG: son:SO1375 carboxypeptidase YP_734948.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1374 acetyltransferase, GNAT family YP_734949.1 PFAM: protein of unknown function DUF486; KEGG: son:SO1373 hypothetical protein YP_734950.1 KEGG: son:SO1372 hypothetical protein YP_734951.1 PFAM: RDD domain containing protein; KEGG: son:SO1371 hypothetical protein YP_734953.1 PFAM: permease YjgP/YjgQ family protein; KEGG: son:SO1370 hypothetical protein YP_734954.1 PFAM: permease YjgP/YjgQ family protein; KEGG: son:SO1369 hypothetical protein YP_734955.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_734956.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: son:SO1367 prephenate dehydratase / chorismate mutase / phospho-2-dehydro-3-deoxyheptonate aldolase YP_734957.1 PFAM: sodium/hydrogen exchanger; KEGG: son:SO1366 sodium/hydrogen exchanger family protein YP_734958.1 KEGG: son:SO1365 hypothetical protein YP_734959.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO1364 iron-sulfur cluster-binding protein YP_734960.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_734961.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis YP_734962.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_734963.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_734964.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_734965.1 Essential for efficient processing of 16S rRNA YP_734966.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_734967.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins YP_734968.1 PFAM: cytochrome c assembly protein; KEGG: son:SO1355 hypothetical protein YP_734969.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO1354 hemolysin protein, putative YP_734970.1 PFAM: protein of unknown function DUF962; KEGG: son:SO1353 hypothetical protein YP_734971.1 PFAM: transposase IS200-family protein; KEGG: vch:VCA0275 IS1004 transposase YP_734972.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_734973.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_734974.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: son:SO1350 DNA repair protein RecO YP_734975.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_734976.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_734977.1 KEGG: son:SO1347 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B YP_734978.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_734979.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: son:SO1345 sigma-E factor regulatory protein RseC YP_734980.1 PFAM: MucB/RseB family protein; KEGG: son:SO1344 sigma-E factor regulatory protein RseB YP_734981.1 PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: son:SO1343 sigma-E factor negative regulatory protein YP_734982.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_734983.1 catalyzes the formation of oxaloacetate from L-aspartate YP_734984.1 KEGG: son:SO1340 hypothetical protein YP_734985.1 PFAM: protein of unknown function DUF339; KEGG: son:SO1339 hypothetical protein YP_734986.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC YP_734987.1 KEGG: son:SO1337 hypothetical protein YP_734988.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH YP_734989.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_734990.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_734991.1 PFAM: protein of unknown function DUF81; KEGG: son:SO1333 hypothetical protein YP_734992.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: son:SO1332 phosphoenolpyruvate-protein phosphotransferase PtsP YP_734993.1 hydrolyzes diadenosine polyphosphate YP_734994.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair YP_734995.1 KEGG: son:SO1329 adenylate cyclase-related protein YP_734996.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1328 transcriptional regulator, LysR family YP_734997.1 PFAM: Hpt domain protein; KEGG: son:SO1327 sensor histidine kinase-related protein YP_734998.1 KEGG: son:SO1326 hypothetical protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_735000.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate YP_735001.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_735002.1 PFAM: purine and other phosphorylases, family 1; KEGG: son:SO1322 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase YP_735003.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: son:SO1321 CobD-related protein YP_735004.1 KEGG: son:SO1320 hypothetical protein YP_735005.1 PFAM: protein of unknown function UPF0126; KEGG: son:SO1319 hypothetical protein YP_735006.1 KEGG: son:SO1318 hypothetical protein YP_735007.1 KEGG: son:SO1317 hypothetical protein YP_735008.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_735009.1 PFAM: peptidase M23B; Opacity-associated protein A, N-terminal domain protein; KEGG: son:SO1314 peptidase, M23/M37 family YP_735010.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_735011.1 PFAM: transcriptional regulator domain protein; WD40 domain protein beta Propeller; KEGG: son:SO1312 TolB domain protein YP_735012.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1310 hypothetical protein YP_735013.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1309 hypothetical TonB-dependent receptor YP_735014.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure YP_735015.1 KEGG: son:SO1306 hypothetical protein YP_735016.1 KEGG: son:SO1305 hypothetical protein YP_735017.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors YP_735018.1 KEGG: son:SO1303 hypothetical protein YP_735019.1 PFAM: Cl- channel, voltage-gated family protein; KEGG: son:SO1302 chloride channel YP_735020.1 Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate YP_735021.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_735022.1 PFAM: Citrate transporter; KEGG: sdn:Sden_2820 citrate transporter YP_735023.1 KEGG: son:SO1298 general secretion pathway protein B YP_735024.1 PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: son:SO1297 general secretion pathway protein A YP_735025.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: sdn:Sden_2823 polynucleotide adenylyltransferase region YP_735026.1 KEGG: son:SO1295 major outer membrane lipoprotein, putative YP_735027.1 KEGG: son:SO1294 ribosomal RNA large subunit methyltransferase A, putative YP_735028.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_735029.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: son:SO1292 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_735030.1 TIGRFAM: dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; KEGG: son:SO1291 dihydroneopterin aldolase YP_735031.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_735032.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_735033.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_735034.1 PFAM: GatB/Yqey domain protein; KEGG: son:SO1287 hypothetical protein YP_735035.1 KEGG: son:SO1286 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase DnaG, DnaB-binding; DNA primase catalytic core, N-terminal domain protein; SMART: Toprim sub domain protein YP_735036.1 TIGRFAM: RNA polymerase sigma factor RpoD; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: son:SO1284 RNA polymerase sigma-70 factor YP_735037.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO1278 methyl-accepting chemotaxis protein YP_735038.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: son:SO1277 proton-dependent oligopeptide transporter (POT) family protein YP_735039.1 PFAM: luciferase family protein; KEGG: pha:PSHAb0540 putative alkanal monooxygenase (FMN-linked) YP_735040.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate YP_735041.1 KEGG: son:SO1275 succinate-semialdehyde dehydrogenase (NADP+); TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase YP_735042.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO1274 probable oxidoreductase YP_735043.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1273 polyamine ABC transporter, permease protein YP_735044.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1272 polyamine ABC transporter, permease protein YP_735045.1 KEGG: son:SO1271 polyamine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_735046.1 PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO1270 polyamine ABC transporter, periplasmic polyamine-binding protein YP_735047.1 PFAM: glutamine synthetase, catalytic region; KEGG: son:SO1268 glutamine synthetase YP_735048.1 PFAM: peptidase C26; KEGG: son:SO1267 hypothetical glutamine amidotransferase YP_735049.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: son:SO1265 transcriptional regulator, putative YP_735050.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO1264 hypothetical oxidoreductase YP_735051.1 KEGG: son:SO1262 hypothetical protein YP_735052.1 PFAM: Rhodanese domain protein; KEGG: son:SO1261 mercaptopyruvate sulfurtransferase YP_735053.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: ilo:IL1764 lipoprotein A family protein YP_735054.1 PFAM: aldehyde dehydrogenase; KEGG: son:SO3496 aldehyde dehydrogenase YP_735055.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_735056.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: hch:HCH_01157 methylmalonate-semialdehyde dehydrogenase YP_735057.1 PFAM: protein of unknown function DUF861, cupin_3; KEGG: son:SO3501 hypothetical protein YP_735058.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO3502 hypothetical protein YP_735059.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3503 glucose/galactose transporter YP_735060.1 KEGG: son:SO3504 hypothetical protein YP_735061.1 KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_735062.1 PFAM: sugar isomerase (SIS); KEGG: son:SO3506 glucosamine-6-phosphate isomerase YP_735063.1 PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: son:SO3507 hypothetical protein YP_735064.1 PFAM: glycoside hydrolase, family 20; Carbohydrate-binding, chitobiase/hexosaminidase-type domain protein; glycoside hydrolase, family 20 domain protein; KEGG: son:SO3509 beta-hexosaminidase b precursor YP_735065.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: sde:Sde_0391 putative methyl-accepting chemotaxis sensory transducer YP_735066.1 KEGG: sde:Sde_2658 type IV pilus assembly protein PilM YP_735067.1 PFAM: protein of unknown function DUF81; KEGG: cps:CPS_1011 hypothetical protein YP_735069.1 PFAM: tryptophan halogenase; KEGG: sdn:Sden_2707 tryptophan halogenase YP_735070.1 TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sdn:Sden_2708 TonB-dependent receptor YP_735071.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO3516 transcriptional regulator, LacI family YP_735072.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO3517 NADH dehydrogenase YP_735073.1 PFAM: nitrogen regulatory protein P-II; KEGG: son:SO3519 nitrogen regulatory protein P-II 1 YP_735074.1 PFAM: methylation site containing protein; KEGG: son:SO3520 type IV pilus biogenesis protein, putative YP_735075.1 PFAM: methylation site containing protein; KEGG: son:SO3521 type IV pilus biogenesis protein, putative YP_735076.1 KEGG: son:SO3523 hypothetical protein YP_735077.1 PFAM: methylation site containing protein; KEGG: son:SO3524 type IV pilus biogenesis protein PilE YP_735078.1 KEGG: son:SO3525 type IV pilin biogenesis protein, putative YP_735079.1 KEGG: son:SO3526 type IV pilus assembly protein PilX YP_735080.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO3527 type IV pilus assembly protein PilW YP_735081.1 TIGRFAM: type IV pilus modification protein PilV; PFAM: methylation site containing protein; KEGG: son:SO3528 type IV pilus assembly protein PilV YP_735082.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_735083.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3530 peptidyl-prolyl cis-trans isomerase FkbP YP_735084.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_735085.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_735086.1 KEGG: son:SO3533 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase YP_735087.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: son:SO3534 MviN protein YP_735088.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_735089.1 PFAM: regulatory protein, ArsR; KEGG: son:SO3538 transcriptional regulator HlyU YP_735090.1 PFAM: peptidase M20; peptidase M28; KEGG: son:SO3539 peptidase, M28D family YP_735091.1 PFAM: protein of unknown function DUF328; KEGG: son:SO3540 hypothetical protein YP_735092.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO3541 sodium:alanine symporter family protein YP_735093.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: son:SO3542 putative phosphoketolase YP_735094.1 PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: son:SO3545 OmpA family protein YP_735095.1 KEGG: son:SO3546 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase YP_735096.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_735097.1 KEGG: son:SO3548 hypothetical protein YP_735098.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: son:SO3549 hypothetical protein YP_735099.1 KEGG: son:SO3550 hypothetical protein YP_735100.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO3551 RNA polymerase sigma-70 factor, ECF subfamily YP_735101.1 PFAM: von Willebrand factor, type A; KEGG: son:SO3552 von Willebrand factor type A domain protein YP_735102.1 putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport YP_735103.1 KEGG: son:SO3554 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_735104.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_735105.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: son:SO3556 cyclic nucleotide phosphodiesterase, putative YP_735106.1 KEGG: son:SO3557 hypothetical protein YP_735107.1 KEGG: son:SO3558 hypothetical protein YP_735108.1 involved in the first step of glutathione biosynthesis YP_735109.1 PFAM: peptidase M16 domain protein; KEGG: son:SO3560 peptidase, M16 family YP_735110.1 KEGG: son:SO3561 hypothetical protein YP_735111.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO3562 proton/glutamate symporter, putative YP_735112.1 KEGG: pha:PSHAa2250 hypothetical protein YP_735113.1 KEGG: vvy:VV2798 oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit YP_735114.1 catalyzes the formation of pyruvate from oxaloacetate YP_735115.1 TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: vvy:VV2800 oxaloacetate decarboxylase, gamma subunit YP_735116.1 KEGG: son:SO0043 hypothetical protein YP_735117.1 KEGG: son:SO3575 CDP-diacylglycerol--serine O-phosphatidyltransferase, putative; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_735118.1 KEGG: son:SO3576 hypothetical protein YP_735119.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: son:SO3577 clpB protein YP_735120.1 PFAM: protein of unknown function DUF152; KEGG: son:SO3578 conserved hypothetical protein TIGR00726 YP_735121.1 KEGG: sdn:Sden_2863 pseudouridine synthase, RluD; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_735122.1 KEGG: son:SO3580 putative lipoprotein YP_735123.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3582 methyl-accepting chemotaxis protein YP_735124.1 PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: hch:HCH_01369 flavodoxin reductases (ferredoxin-NADPH reductases) family 1 YP_735125.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sdn:Sden_2876 pseudouridine synthase, Rsu YP_735126.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: son:SO3584 hypothetical protein YP_735127.1 PFAM: NADPH-dependent FMN reductase; KEGG: son:SO3585 azoreductase, putative YP_735128.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO3586 glyoxalase family protein YP_735129.1 KEGG: son:SO3587 hypothetical protein YP_735130.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: son:SO3588 gpr1/fun34/YaaH family protein YP_735131.1 KEGG: son:SO3591 hypothetical protein YP_735132.1 PFAM: MltA-interacting MipA family protein; KEGG: son:SO3592 putative outer membrane protein YP_735133.1 KEGG: son:SO3593 hypothetical protein YP_735134.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO3594 transcriptional regulatory protein RstA, putative YP_735135.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3595 sensor protein RstB, putative YP_735136.1 PFAM: protein of unknown function DUF1289; KEGG: son:SO3596 hypothetical protein YP_735137.1 KEGG: son:SO3597 hypothetical protein YP_735138.1 PFAM: transposase IS200-family protein; KEGG: vch:VCA0275 IS1004 transposase YP_735139.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_735140.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO3599 sulfate ABC transporter, periplasmic sulfate-binding protein YP_735141.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO3600 sulfate ABC transporter, permease protein YP_735142.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO3601 sulfate ABC transporter, permease protein YP_735143.1 KEGG: son:SO3602 sulfate ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_735144.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO3603 secretion protein, HlyD family YP_735145.1 KEGG: vch:VCA0048 hypothetical protein YP_735147.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: son:SO3611 ATPase, AAA family YP_735148.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_735149.1 KEGG: son:SO3614 hypothetical protein YP_735150.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO3615 hypothetical protein YP_735152.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3360 transposase IS116/IS110/IS902 YP_735153.1 KEGG: son:SO1075 hypothetical protein YP_735154.1 PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: son:SO1074 tyrosine-specific transport protein, putative YP_735155.1 GbpA; plays a role mediating bacterial attachment and colonization of zooplankton and/or intestinal epithelium; in Vibrio cholerae this protein probably binds directly N-acetylglucosamine residues in chitin, glycoproteins and lipids on intestinal epithelial cells YP_735156.1 PFAM: protein of unknown function UPF0016; KEGG: son:SO1071 hypothetical protein YP_735157.1 PFAM: Catalase domain protein; KEGG: son:SO1070 catalase YP_735158.1 KEGG: son:SO1069 hypothetical protein YP_735159.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO1068 hypothetical protein YP_735160.1 KEGG: son:SO1067 hypothetical protein YP_735161.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: son:SO1066 extracellular nuclease YP_735162.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1065 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA YP_735163.1 PFAM: WD-40 repeat protein; KEGG: son:SO1064 hypothetical WD domain protein YP_735164.1 PFAM: SlyX family protein; KEGG: son:SO1063 SlyX protein YP_735165.1 KEGG: son:SO1062 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_735166.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO1061 TPR domain protein YP_735167.1 KEGG: son:SO1060 hypothetical protein YP_735168.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1059 aminopeptidase N YP_735169.1 PFAM: EAL domain protein; KEGG: vpa:VP1768 hypothetical protein YP_735170.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: son:SO1056 methyl-accepting chemotaxis protein YP_735171.1 KEGG: son:SO1055 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_735172.1 PFAM: protein of unknown function DUF72; KEGG: son:SO1053.2 hypothetical protein YP_735173.1 PFAM: phosphate transporter; KEGG: son:SO1052 low-affinity inorganic phosphate transporter YP_735174.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_735175.1 PFAM: carbon starvation protein CstA; KEGG: sdn:Sden_0907 carbon starvation protein CstA YP_735176.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1049 acetyltransferase, GNAT family YP_735177.1 PFAM: LrgB family protein; KEGG: son:SO1048 hypothetical protein YP_735178.1 PFAM: LrgA family protein; KEGG: son:SO1047 holin-like protein YP_735179.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1046 transcriptional regulator, LysR family YP_735180.1 KEGG: son:SO1045 hypothetical protein YP_735181.1 PFAM: extracellular solute-binding protein, family 3; KEGG: son:SO1044 amino acid ABC transporter, periplasmic amino acid-binding protein YP_735182.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1043 amino acid ABC transporter, permease protein YP_735183.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1042 amino acid ABC transporter, ATP-binding protein YP_735184.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: bcn:Bcen_0332 glutathione-dependent formaldehyde-activating, GFA YP_735186.1 KEGG: eca:ECA2891 hypothetical protein YP_735187.1 KEGG: vvy:VVA1480 hypothetical protein YP_735188.1 PFAM: beta-lactamase domain protein; KEGG: vvy:VVA1481 alkyl sulfatase YP_735189.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive YP_735190.1 PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO3716 DnaJ domain protein YP_735191.1 PFAM: DSBA oxidoreductase; KEGG: son:SO3718 thiol:disulfide interchange protein, DsbA family YP_735192.1 KEGG: vpa:VP0375 putative lipoprotein YP_735193.1 KEGG: son:SO3719 hypothetical protein YP_735194.1 KEGG: son:SO3720 protoporphyrinogen oxidase YP_735195.1 PFAM: major facilitator superfamily MFS_1; KEGG: sdn:Sden_0720 major facilitator superfamily MFS_1 YP_735196.1 KEGG: son:SO3722 hypothetical protein YP_735197.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis YP_735198.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sdn:Sden_0961 TrkA-C YP_735199.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ YP_735200.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_735201.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO3728 uroporphyrin-III C-methyltransferase YP_735202.1 PFAM: phospholipase A1; KEGG: sdn:Sden_0955 phospholipase A1 YP_735203.1 KEGG: son:SO3731 hypothetical protein YP_735204.1 KEGG: son:SO3733 hypothetical protein YP_735205.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan YP_735206.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_735207.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide YP_735208.1 TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: son:SO3738 sulfite reductase (NADPH) flavoprotein alpha-component YP_735209.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm YP_735210.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme YP_735211.1 KEGG: son:SO3741.1 hypothetical protein YP_735212.1 PFAM: regulatory protein, TetR; KEGG: son:SO3743 transcriptional regulator, TetR family YP_735213.1 KEGG: son:SO3744 hypothetical protein YP_735214.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose YP_735215.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: son:SO3746 lipid A biosynthesis lauroyl acyltransferase YP_735216.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_735217.1 KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein YP_735218.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon YP_735219.1 PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: son:SO3748 LysM domain protein YP_735220.1 KEGG: son:SO3749 hypothetical protein YP_735221.1 PFAM: peptidase M16 domain protein; KEGG: gvi:glr3686 probable peptidase YP_735222.1 PFAM: peptidase M16 domain protein; KEGG: son:SO3751 hypothetical protein YP_735223.1 PFAM: response regulator receiver; KEGG: vpa:VP1711 response regulator YP_735224.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: bld:BLi01245 hypothetical protein YP_735225.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: vpa:VP1653 putative tricarboxylic transport TctA YP_735226.1 KEGG: vvy:VV1523 putative tricarboxylic transport membrane protein YP_735227.1 PFAM: Uncharacterized protein UPF0065; KEGG: vpa:VP1651 putative tricarboxylic transport TctC YP_735228.1 PFAM: phosphate-selective porin O and P; KEGG: pae:PA3279 outer membrane porin OprP precursor YP_735229.1 PFAM: protein of unknown function DUF583; KEGG: sdn:Sden_0706 protein of unknown function DUF583 YP_735230.1 PFAM: AFG1-family ATPase; KEGG: son:SO3756 hypothetical ATPase YP_735231.1 PFAM: regulatory protein, MerR; KEGG: vpa:VPA1563 putative transcriptional regulator YP_735232.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: vpa:VPA1564 hypothetical protein YP_735233.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vvu:VV12509 putative threonine efflux protein YP_735234.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3757 rubisco operon transcriptional regulator YP_735235.1 PFAM: protein of unknown function DUF897; KEGG: son:SO3758 hypothetical protein YP_735236.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: son:SO3759 GGDEF domain protein YP_735237.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_735238.1 KEGG: son:SO3761 hypothetical protein YP_735239.1 PFAM: protein of unknown function DUF350; KEGG: son:SO3762 hypothetical protein YP_735240.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_735241.1 KEGG: son:SO3764 hypothetical protein YP_735242.1 PFAM: PspA/IM30 family protein; KEGG: son:SO3765 hypothetical protein YP_735243.1 KEGG: son:SO3766 hypothetical protein YP_735244.1 KEGG: son:SO3767 hypothetical protein YP_735245.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: son:SO3768 ion transporter YP_735246.1 PFAM: adenylate cyclase; KEGG: son:SO3769 hypothetical protein YP_735247.1 PFAM: protein of unknown function DUF47; KEGG: son:SO3770 conserved hypothetical protein TIGR00153 YP_735248.1 PFAM: phosphate transporter; KEGG: son:SO3771 phosphate transporter, putative YP_735249.1 SMART: SH3 domain protein domain protein; KEGG: son:SO3772 SH3 domain protein YP_735250.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain YP_735251.1 PFAM: protein of unknown function DUF599; KEGG: son:SO3776 hypothetical protein YP_735252.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: son:SO3777 hypothetical protein YP_735253.1 TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: son:SO3778 adenylate cyclase CyaB, putative YP_735254.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c YP_735255.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c YP_735256.1 KEGG: son:SO3782 hypothetical protein YP_735257.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO3783 ATP-dependent RNA helicase, DEAD box family YP_735258.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vch:VC1405 methyl-accepting chemotaxis protein YP_735259.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO3789 aminotransferase, class V YP_735260.1 PFAM: Fe-S metabolism associated SufE; KEGG: son:SO3790 hypothetical protein YP_735261.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase M19, renal dipeptidase; KEGG: son:SO3791 renal dipeptidase family protein YP_735262.1 KEGG: son:SO3792 hypothetical protein YP_735263.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: son:SO3793 hypothetical protein YP_735264.1 KEGG: son:SO3794 hypothetical protein YP_735265.1 PFAM: protein of unknown function DUF1696; KEGG: son:SO3796 hypothetical protein YP_735266.1 PFAM: peptidase U32; KEGG: son:SO3797 peptidase, U32 family YP_735267.1 PFAM: pseudouridine synthase; KEGG: sdn:Sden_3048 pseudouridylate synthase YP_735268.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase YP_735269.1 PFAM: protease-associated PA domain protein; KEGG: ade:Adeh_2937 protease-associated PA YP_735271.1 PFAM: ABC-2 type transporter; KEGG: son:SO3801 ABC transporter, permease protein YP_735272.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3802 ABC transporter, ATP-binding protein YP_735273.1 KEGG: son:SO3803 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_735274.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: son:SO3804 phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative YP_735275.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO3805 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_735276.1 KEGG: cps:CPS_1725 hypothetical protein YP_735277.1 KEGG: son:SO3807 sterol desaturase family protein YP_735278.1 KEGG: son:SO3808 hypothetical protein YP_735279.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: son:SO3810 OmpA-like transmembrane domain protein YP_735280.1 PFAM: Uncharacterized lipoprotein; KEGG: son:SO3811 lipoprotein, putative YP_735281.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO3812 peptidyl-prolyl cis-trans isomerase A YP_735282.1 KEGG: son:SO3813 hypothetical protein YP_735283.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3814 AmpG protein, putative YP_735284.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_735285.1 PFAM: VanZ family protein; KEGG: son:SO3816 hypothetical protein YP_735286.1 KEGG: son:SO3817 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein YP_735287.1 PFAM: nitrogen regulatory protein P-II; KEGG: son:SO3819 nitrogen regulatory protein P-II YP_735288.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cps:CPS_3995 ammonium transporter YP_735289.1 KEGG: son:SO3822 hypothetical protein YP_735290.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_735291.1 PFAM: protein of unknown function DUF819; KEGG: son:SO3828 hypothetical protein YP_735292.1 KEGG: son:SO3829 hypothetical protein YP_735293.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: son:SO3830 hypothetical protein YP_735294.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3831 acetyltransferase, GNAT family YP_735295.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: son:SO3832 hemK family protein YP_735296.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_735297.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_735298.1 TIGRFAM: outer membrane lipoprotein LolB; PFAM: outer membrane lipoprotein LolB; KEGG: son:SO3835 outer membrane lipoprotein LolB YP_735299.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_735300.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_735301.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3838 methyl-accepting chemotaxis protein YP_735302.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO3840 RNA polymerase sigma-70 factor, ECF subfamily YP_735303.1 KEGG: son:SO3841 hypothetical protein YP_735304.1 KEGG: son:SO3842 hypothetical protein YP_735305.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sdn:Sden_1090 pseudouridine synthase, Rsu YP_735306.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO3844 peptidase, M13 family YP_735307.1 KEGG: son:SO3846 hypothetical protein YP_735308.1 KEGG: son:SO3847 hypothetical protein YP_735309.1 KEGG: son:SO3848 hypothetical protein YP_735310.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: sdn:Sden_0739 glutathione S-transferase-like protein YP_735311.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sdn:Sden_0738 TonB-dependent receptor YP_735312.1 PFAM: membrane-flanked domain; KEGG: son:SO3849 hypothetical protein YP_735313.1 KEGG: vpa:VP2681 putative manganese transporter YP_735314.1 PFAM: protein of unknown function DUF1456; KEGG: son:SO3852 hypothetical protein YP_735315.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_735316.1 KEGG: son:SO3856 hypothetical protein YP_735317.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO3857 PAP2 family protein YP_735318.1 KEGG: son:SO3859 cyclic nucleotide phosphodiesterase, putative; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein YP_735319.1 SMART: extracellular solute-binding protein, family 3; KEGG: son:SO3860 hypothetical protein YP_735320.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: son:SO3861 iron-sulfur cluster-binding protein YP_735321.1 TIGRFAM: molybdate transport repressor, ModE; Molybdenum-pterin binding; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: son:SO3862 molybdenum transport regulatory protein ModE YP_735322.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO3863 molybdenum ABC transporter, periplasmic molybdenum-binding protein YP_735323.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE YP_735324.1 Part of the ABC transporter complex modABC involved in molybdenum import YP_735325.1 PFAM: phage integrase family protein; KEGG: son:SO3866 site-specific recombinase, phage integrase family YP_735328.1 PFAM: helix-turn-helix domain protein; KEGG: ngo:NGO0797 putative transcriptional regulator YP_735329.1 KEGG: bfr:BF3681 C-5 cytosine-specific DNA-methylase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_735330.1 KEGG: bld:BLi00747 hypothetical protein YP_735331.1 PFAM: Integrase, catalytic region; KEGG: son:SOA0129 transposase, IS3 family YP_735332.1 KEGG: cpe:CPE1290 hypothetical protein YP_735333.1 KEGG: cpe:CPE1289 hypothetical protein YP_735334.1 PFAM: SEC-C motif domain protein; Sel1 domain protein repeat-containing protein; KEGG: pcr:Pcryo_2230 Sel1 YP_735335.1 PFAM: AAA-4 family protein; peptidase C14, caspase catalytic subunit p20; KEGG: rpd:RPD_2288 hypothetical protein YP_735336.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sdn:Sden_3235 DNA-directed DNA polymerase YP_735337.1 KEGG: csa:Csal_2379 hypothetical protein YP_735341.1 KEGG: bme:BMEI1696 hypothetical membrane spanning protein YP_735343.1 PFAM: phage integrase family protein; KEGG: son:SO3884 site-specific recombinase, phage integrase family YP_735344.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: son:SO3885 ATPase, AAA family YP_735345.1 KEGG: son:SO3886 hypothetical protein YP_735346.1 KEGG: son:SO3887 hypothetical protein YP_735347.1 PFAM: protein of unknown function DUF1508; KEGG: son:SO3888 hypothetical protein YP_735348.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: son:SO3890 methyl-accepting chemotaxis protein YP_735349.1 KEGG: son:SO3892 hypothetical protein YP_735350.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3894 sensor histidine kinase YP_735351.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: son:SO3895 HesA/MoeB/ThiF family protein YP_735352.1 KEGG: son:SO3896 outer membrane porin, putative YP_735353.1 PFAM: porin, Gram-negative type; KEGG: son:SO3896 outer membrane porin, putative YP_735354.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_735355.1 KEGG: son:SO3898 L-sorbosone dehydrogenase, putative YP_735356.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_735357.1 PFAM: protein of unknown function UPF0227; KEGG: son:SO3900 hypothetical protein YP_735358.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; KEGG: son:SO3901 lacZ expression regulator YP_735359.1 PFAM: protein of unknown function DUF1249; KEGG: son:SO3902 hypothetical protein YP_735360.1 KEGG: son:SO3903 ADP-ribose pyrophosphatase; TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase YP_735361.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell YP_735362.1 KEGG: son:SO3905 hypothetical protein YP_735363.1 KEGG: son:SO3906 hypothetical protein YP_735364.1 PFAM: protein of unknown function DUF461; KEGG: son:SO3907 hypothetical protein YP_735365.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO3908 enoyl-CoA hydratase/isomerase family protein YP_735366.1 PFAM: PspC domain protein; KEGG: son:SO3909 hypothetical protein YP_735367.1 KEGG: son:SO3910 hypothetical protein YP_735368.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: son:SO3912 TIM-barrel protein, yjbN family YP_735369.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO3913 putative hydroxylase YP_735370.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO3914 TonB-dependent receptor, putative YP_735371.1 KEGG: son:SO3915 putative chemotaxis protein CheX YP_735372.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_735373.1 KEGG: son:SO3917 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase YP_735374.1 KEGG: son:SO3918 hypothetical protein YP_735375.1 KEGG: son:SO3920 periplasmic Fe hydrogenase, large subunit; TIGRFAM: hydrogenases, Fe-only; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hydrogenase large subunit domain protein YP_735376.1 PFAM: iron hydrogenase, small subunit; KEGG: son:SO3921 periplasmic Fe hydrogenase, small subunit YP_735377.1 KEGG: son:SO3922 formate dehydrogenase, putative YP_735378.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_735379.1 KEGG: son:SO3924 hypothetical protein YP_735380.1 catalyzes the formation of biotin from dethiobiotin and sulfur YP_735381.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: son:SO3926 GTP-binding protein YP_735382.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_735383.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_735384.1 binds single-stranded DNA at the primosome assembly site YP_735385.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_735386.1 PFAM: protein of unknown function DUF481; KEGG: son:SO3931 putative salt-induced outer membrane protein YP_735387.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3933 hypothetical protein YP_735388.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA YP_735389.1 KEGG: son:SO3935 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain protein; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein YP_735390.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO3936 sodium-type flagellar protein MotX YP_735391.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_735392.1 KEGG: son:SO3938 hypothetical protein YP_735393.1 forms a direct contact with the tRNA during translation YP_735394.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_735395.1 PFAM: AFG1-family ATPase; KEGG: son:SO3941 hypothetical protein YP_735396.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3942 serine protease, HtrA/DegQ/DegS family YP_735397.1 TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3943 protease DegS YP_735398.1 PFAM: protein of unknown function DUF342; KEGG: son:SO0826 hypothetical protein YP_735399.1 KEGG: son:SO0824 hypothetical protein YP_735400.1 PFAM: peptidase M50; KEGG: son:SO0823 hypothetical protein YP_735401.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cps:CPS_0650 sensor histidine kinase YP_735402.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sde:Sde_3703 response regulator receiver domain protein (CheY-like) YP_735403.1 KEGG: cps:CPS_0652 hypothetical protein YP_735404.1 KEGG: sde:Sde_3701 hypothetical protein YP_735405.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: cps:CPS_0935 putative polyhydroxyalkanoate depolymerase YP_735406.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_0936 TonB-dependent receptor YP_735407.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: cps:CPS_0937 DNA-binding response regulator, LuxR family YP_735408.1 TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cps:CPS_0939 sensory box sensor histidine kinase/response regulator YP_735409.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0940 major facilitator family transporter YP_735410.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: cps:CPS_0941 putative lipase YP_735411.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_735412.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis YP_735413.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: bps:BPSL2073 poly(3-hydroxybutyrate) depolymerase precursor YP_735414.1 PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: cps:CPS_0943 D-beta-hydroxybutyrate dehydrogenase YP_735415.1 KEGG: cps:CPS_1598 3-oxoadipate CoA-succinyl transferase, alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_735416.1 KEGG: cps:CPS_1597 3-oxoadipate CoA-succinyl transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_735420.1 PFAM: methylation site containing protein; KEGG: sdn:Sden_3340 methylation YP_735421.1 KEGG: ddi:DDB0220469 putative GATA-binding transcription factor YP_735422.1 PFAM: Abortive infection protein; KEGG: rsp:RSP_2034 possible CAAX amino terminal protease family YP_735423.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_735424.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0817 transcriptional activator protein MetR YP_735425.1 KEGG: son:SO0816 hypothetical protein YP_735426.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0815 TonB-dependent receptor C-terminal domain protein YP_735427.1 KEGG: sdn:Sden_0728 hypothetical protein YP_735428.1 KEGG: son:SO0813 hypothetical protein YP_735429.1 KEGG: son:SO0812 hypothetical protein YP_735430.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific YP_735431.1 catalyzes the formation of D-ribose 5-phosphate from ribose YP_735432.1 PFAM: blue (type 1) copper domain protein; KEGG: son:SO0809 azurin precursor YP_735433.1 KEGG: son:SO0808 hypothetical protein YP_735434.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sdn:Sden_0469 glycerophosphoryl diester phosphodiesterase YP_735435.1 KEGG: son:SO0807 hypoxanthine-guanine phosphoribosyltransferase YP_735436.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Alkaline phosphatase; KEGG: son:SO0806 alkaline phosphatase, putative YP_735437.1 PFAM: CBS domain containing protein; KEGG: son:SO0805 CBS domain protein YP_735438.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO0802 MATE efflux family protein YP_735439.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: son:SO0801 hypothetical protein YP_735440.1 PFAM: protein of unknown function DUF985; KEGG: son:SO0799 hypothetical protein YP_735441.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0798 hypothetical protein YP_735442.1 KEGG: son:SO0797 hypothetical protein YP_735443.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO0796 GGDEF family protein YP_735444.1 TIGRFAM: uncharacterized domain; PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: sdn:Sden_0824 protein of unknown function DUF181 YP_735445.1 KEGG: son:SO0793 hypothetical protein YP_735446.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: son:SO0987 methyl-accepting chemotaxis protein YP_735447.1 KEGG: son:SO0792 hypothetical protein YP_735448.1 KEGG: son:SO0788 hypothetical protein YP_735449.1 KEGG: son:SO0784 hypothetical protein YP_735450.1 KEGG: ecj:JW2609 hypothetical protein YP_735451.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: ecj:JW2608 conserved hypothetical protein YP_735452.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_735453.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_735454.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_735455.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0778 oxidoreductase, FAD-binding, UbiH/Coq6 family YP_735456.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0777 2-octaprenyl-6-methoxyphenol hydroxylase YP_735457.1 TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: son:SO0776 hypothetical protein YP_735458.1 PFAM: protein of unknown function DUF710; KEGG: son:SO0775 hypothetical protein YP_735459.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: son:SO0774 5-formyltetrahydrofolate cyclo-ligase family protein YP_735460.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO0772 oxidoreductase, short chain dehydrogenase/reductase family YP_735461.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: son:SO0771 hypothetical protein YP_735462.1 oxidizes malate to oxaloacetate YP_735463.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_735464.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: son:SO0768 putative NADH-flavin reductase YP_735465.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sdn:Sden_2893 LysR, substrate-binding YP_735466.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: son:SO0740 melanin biosynthesis protein TyrA, putative YP_735467.1 KEGG: son:SO0741 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_735468.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: son:SO0742 iron(III) ABC transporter, ATP-binding protein YP_735469.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO0743 iron(III) ABC transporter, permease protein YP_735470.1 PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO0744 iron(III) ABC transporter, periplasmic iron(III)-binding protein YP_735471.1 KEGG: son:SO0745 hypothetical protein YP_735472.1 PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO0746 glutathione S-transferase family protein YP_735473.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO0747 ferredoxin--NADP reductase YP_735474.1 KEGG: son:SO0748 hypothetical protein YP_735475.1 PFAM: Phosphoglycerate mutase; KEGG: son:SO0749 hypothetical protein YP_735476.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: son:SO0750 glutamate synthase, putative YP_735477.1 KEGG: son:SO0752 hypothetical protein YP_735478.1 KEGG: son:SO0753 hypothetical protein YP_735479.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0754 ABC transporter, ATP-binding protein YP_735480.1 KEGG: son:SO0755 hypothetical protein YP_735481.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_735482.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0757 TPR domain protein YP_735483.1 KEGG: son:SO0758 hypothetical protein YP_735484.1 PFAM: Rh family protein/ammonium transporter; KEGG: son:SO0760 ammonium transporter YP_735485.1 PFAM: nitrogen regulatory protein P-II; KEGG: son:SO0761 nitrogen regulatory protein P-II 1 YP_735486.1 PFAM: isochorismatase hydrolase; KEGG: son:SO0762 isochorismatase family protein YP_735487.1 KEGG: ppr:PBPRA1347 hypothetical protein YP_735488.1 KEGG: son:SO0764 hypothetical protein YP_735489.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO0765 threonine efflux protein, putative YP_735490.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO0766 transcriptional regulator, AraC/XylS family YP_735491.1 KEGG: son:SO0766.1 hypothetical protein YP_735492.1 PFAM: Alkaline phosphatase; KEGG: cps:CPS_3933 alkaline phosphatase family protein YP_735493.1 PFAM: Alkaline phosphatase; KEGG: cps:CPS_3932 alkaline phosphatase family protein YP_735494.1 KEGG: son:SO0736 conserved hypothetical protein YP_735495.1 KEGG: mag:amb2980 hypothetical 918 kDa protein Y4LL; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold domain protein; SMART: PAS domain containing protein YP_735496.1 PFAM: Cold-shock protein, DNA-binding; Excalibur domain protein; SMART: Cold shock protein; KEGG: son:SO0733 cold shock domain family protein YP_735497.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO4539 serine protease, subtilase family YP_735498.1 PFAM: Thioredoxin domain; KEGG: son:SO0732 hypothetical protein YP_735500.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0726 ABC transporter, ATP-binding protein YP_735501.1 KEGG: neu:NE1275 hypothetical protein YP_735502.1 KEGG: son:SO0725 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase YP_735503.1 KEGG: son:SO0721 hypothetical protein YP_735504.1 KEGG: son:SO0720 hypothetical protein YP_735505.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pae:PA4486 4-carboxymuconolactone decarboxylase YP_735506.1 KEGG: vpa:VP0621 putative nonspecific acid phosphatase precursor YP_735507.1 KEGG: vpa:VPA0690 hypothetical protein YP_735508.1 PFAM: von Willebrand factor, type A; KEGG: vfi:VF1421 transporter YP_735509.1 PFAM: von Willebrand factor, type A; KEGG: vpa:VPA0688 hypothetical protein YP_735510.1 KEGG: vpa:VPA0687 hypothetical protein YP_735511.1 PFAM: protein of unknown function DUF58; KEGG: vpa:VPA0686 hypothetical protein YP_735512.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: vpa:VPA0685 MoxR-related protein YP_735513.1 PFAM: Radical SAM domain protein; KEGG: vpa:VPA0684 putative arylsulfatase regulator YP_735514.1 PFAM: sulfatase; KEGG: vpa:VPA0683 putative arylsulfatase protein YP_735515.1 PFAM: regulatory protein, LysR; KEGG: vvu:VV20150 transcriptional regulator YP_735516.1 TIGRFAM: putative outer membrane adhesin like protein; PFAM: von Willebrand factor, type A; KEGG: tcx:Tcr_0105 VCBS YP_735518.1 PFAM: HipA domain protein; KEGG: son:SO0706 hypothetical protein YP_735519.1 PFAM: helix-turn-helix domain protein; KEGG: son:SO0705 transcriptional regulator, Cro/CI family YP_735520.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_735521.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_735522.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO0702 MATE efflux family protein YP_735523.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0701 transcriptional regulator, LysR family YP_735524.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRA2319 hypothetical membrane-fusion protein YP_735525.1 PFAM: acriflavin resistance protein; KEGG: ppr:PBPRA2318 hypothetical transporter, AcrB/D/F family YP_735526.1 KEGG: son:SO0699 hypothetical protein YP_735527.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: son:SO0698 FxsA protein YP_735528.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: son:SO0697 periplasmic divalent cation tolerance protein CutA YP_735529.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm YP_735530.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: son:SO0695 glutathione-regulated potassium-efflux system protein KefC, putative YP_735531.1 KEGG: son:SO0694 galactokinase; TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein YP_735532.1 PFAM: Aldose 1-epimerase; KEGG: son:SO0693 aldose 1-epimerase YP_735533.1 KEGG: son:SO0691 hypothetical protein YP_735534.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0640 alcohol dehydrogenase, zinc-containing YP_735535.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4013 hypothetical protein YP_735536.1 PFAM: protein kinase; leucine-rich repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein, typical subtype; KEGG: son:SO4016 hypothetical protein YP_735537.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: son:SO4017 transglycosylase, Slt family YP_735538.1 KEGG: son:SO4018 hypothetical protein YP_735539.1 KEGG: son:SO4019 hypothetical protein YP_735540.1 PFAM: peptidase M16 domain protein; KEGG: son:SO4022 peptidase, M16 family YP_735541.1 KEGG: son:SO4027 hypothetical protein YP_735542.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: son:SO4028 single-strand binding protein YP_735543.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4029 transporter, putative YP_735544.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: son:SO4030 excinuclease ABC, A subunit YP_735545.1 KEGG: son:SO4031 hypothetical protein YP_735546.1 PFAM: peptidase M20; peptidase M28; KEGG: son:SO4032 hypothetical protein YP_735547.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO4034 ATP-dependent RNA helicase DeaD YP_735548.1 KEGG: son:SO4035 hypothetical protein YP_735549.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO4039 hydrolase, haloacid dehalogenase-like family YP_735550.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4040 integral membrane domain protein YP_735551.1 KEGG: son:SO4042 hydratase/decarboxylase family protein YP_735552.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO4043 TonB domain protein YP_735553.1 KEGG: son:SO4044 hypothetical protein YP_735554.1 PFAM: cytochrome c, class I; KEGG: son:SO4047 cytochrome c family protein YP_735555.1 KEGG: son:SO4048 cytochrome c family protein YP_735556.1 KEGG: son:SO4050 hypothetical protein YP_735557.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO4051 HlyD family secretion protein YP_735558.1 PFAM: regulatory protein, MarR; KEGG: son:SO4052 transcriptional regulator, MarR family YP_735560.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor YP_735561.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_735562.1 KEGG: son:SO4056 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes YP_735563.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis YP_735564.1 PFAM: protein of unknown function DUF81; KEGG: son:SO4058 hypothetical protein YP_735565.1 PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4060 polysulfide reductase, subunit C YP_735566.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4061 polysulfide reductase, subunit B YP_735567.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4062 polysulfide reductase, subunit A YP_735568.1 PFAM: pentapeptide repeat protein; KEGG: son:SO4064 mcbg protein, putative YP_735570.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_735571.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bth:BT3559 hypothetical protein YP_735572.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4069 hypothetical protein YP_735573.1 PFAM: protein of unknown function DUF541; KEGG: son:SO4070 hypothetical protein YP_735574.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_735575.1 PFAM: protein of unknown function DUF331; KEGG: son:SO4073 hypothetical protein YP_735576.1 KEGG: son:SO4075 hypothetical protein YP_735577.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4077 TonB-dependent receptor, putative YP_735578.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: son:SO4078 PmbA protein YP_735579.1 PFAM: protein of unknown function DUF615; KEGG: son:SO4079 hypothetical protein YP_735580.1 PFAM: Ig domain protein, group 1 domain protein; KEGG: son:SO4080 hypothetical protein YP_735581.1 PFAM: amino acid permease-associated region; KEGG: son:SO4081 amino acid permease YP_735582.1 KEGG: ppr:PBPRB1460 hypothetical protein YP_735584.1 PFAM: ABC-2 type transporter; KEGG: son:SO4087 conserved hypothetical protein YP_735585.1 PFAM: ABC-2 type transporter; KEGG: son:SO4088 conserved hypothetical protein YP_735586.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO4089 HlyD family secretion protein YP_735587.1 PFAM: outer membrane efflux protein; KEGG: son:SO4090 outer membrane efflux protein YP_735588.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: son:SO4091 TldD protein YP_735589.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: son:SO4092 hydrolase, carbon-nitrogen family YP_735590.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO4093 hypothetical protein YP_735591.1 involved in the processing of the 5'end of 16S rRNA YP_735592.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO4095 maf protein YP_735593.1 PFAM: Rod shape-determining protein MreD; KEGG: son:SO4096 rod shape-determining protein MreD YP_735594.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_735595.1 functions in MreBCD complex in some organisms YP_735596.1 KEGG: son:SO4100 MSHA biogenesis protein MshQ YP_735597.1 KEGG: son:SO4101 MSHA biogenesis protein MshP YP_735598.1 PFAM: methylation site containing protein; KEGG: son:SO4102 MSHA biogenesis protein MshO YP_735599.1 PFAM: methylation site containing protein; KEGG: son:SO4103 MSHA pilin protein MshD YP_735600.1 PFAM: methylation site containing protein; KEGG: son:SO4104 MSHA pilin protein MshC YP_735601.1 PFAM: methylation site containing protein; KEGG: sdn:Sden_3340 methylation YP_735602.1 PFAM: methylation site containing protein; KEGG: son:SO4105 MSHA pilin protein MshA YP_735603.1 PFAM: methylation site containing protein; KEGG: son:SO4106 MSHA pilin protein MshB YP_735604.1 KEGG: son:SO4107 hypothetical protein YP_735605.1 PFAM: type II secretion system protein; KEGG: son:SO4108 MSHA biogenesis protein MshG YP_735606.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO4109 MSHA biogenesis protein MshE YP_735607.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO4110 MSHA biogenesis protein MshN, putative YP_735608.1 KEGG: son:SO4111 MSHA biogenesis protein MshM YP_735609.1 TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB, short N-terminal domain protein; KEGG: son:SO4112 MSHA biogenesis protein MshL YP_735610.1 KEGG: son:SO4113 MSHA biogenesis protein MshK YP_735611.1 KEGG: son:SO4114 MSHA biogenesis protein MshJ YP_735612.1 KEGG: sdn:Sden_3350 hypothetical protein YP_735613.1 KEGG: son:SO4114.2 hypothetical biogenesis protein MshI YP_735614.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules YP_735615.1 PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: son:SO4118 malate oxidoreductase, putative YP_735616.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_735617.1 KEGG: son:SO4121 hypothetical protein YP_735618.1 TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO4122 primosomal protein N' YP_735619.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_735620.1 PFAM: Sporulation domain protein; KEGG: son:SO4124 cell division protein FtsN, putative YP_735621.1 KEGG: son:SO4126 hypothetical protein YP_735622.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: vvy:VV2149 AraC-type DNA-binding domain-containing protein YP_735623.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: vvu:VV12207 hypothetical protein YP_735624.1 PFAM: band 7 protein; KEGG: son:SO4128 SPFH domain/Band 7 family protein YP_735625.1 PFAM: band 7 protein; KEGG: son:SO4129 SPFH domain/Band 7 family protein YP_735626.1 PFAM: protein of unknown function DUF107; KEGG: son:SO4130 hypothetical protein YP_735627.1 KEGG: son:SO4131 hypothetical protein YP_735628.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway YP_735629.1 PFAM: protein of unknown function DUF465; KEGG: son:SO4134 hypothetical protein YP_735630.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: son:SO4136 decarboxylase, pyridoxal-dependent YP_735631.1 KEGG: son:SO4138 hypothetical protein YP_735632.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pca:Pcar_0306 hypothetical protein YP_735633.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4139 hypothetical protein YP_735634.1 KEGG: son:SO4142 cytochrome c family protein YP_735635.1 KEGG: son:SO4143 hypothetical protein YP_735636.1 KEGG: son:SO4144 cytochrome c, putative YP_735637.1 PFAM: Benzoate membrane transport protein; sulphate transporter; KEGG: son:SO4150 transporter, putative YP_735638.1 TIGRFAM: TonB family protein; KEGG: pat:Patl_2439 hypothetical protein YP_735639.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4155 sensor histidine kinase YP_735640.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO4157 DNA-binding response regulator YP_735642.1 PFAM: methylation site containing protein; KEGG: son:SO4159 hypothetical protein YP_735643.1 heat shock protein involved in degradation of misfolded proteins YP_735644.1 heat shock protein involved in degradation of misfolded proteins YP_735645.1 PFAM: protein of unknown function DUF971; KEGG: son:SO4164 hypothetical protein YP_735646.1 KEGG: pae:PA0571 hypothetical protein YP_735647.1 PFAM: KAP P-loop domain protein; KEGG: sdn:Sden_3419 kap P-loop YP_735648.1 PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: son:SO4169 hypothetical protein YP_735649.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO4170 C factor cell-cell signaling protein YP_735650.1 KEGG: son:SO4171 hypothetical protein YP_735651.1 PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: son:SO4172 DNA-binding response regulator YP_735652.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4173 sensor histidine kinase YP_735653.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO4174 NAD dependent epimerase/dehydratase family protein YP_735654.1 KEGG: son:SO4176 hypothetical protein YP_735655.1 KEGG: son:SO4177 hypothetical protein YP_735656.1 KEGG: son:SO4178 hypothetical protein YP_735657.1 PFAM: glycosyl transferase, family 2; chitin synthase; KEGG: son:SO4179 glycosyl transferase, group 2 family protein YP_735658.1 KEGG: son:SO4180 hypothetical protein YP_735659.1 PFAM: pseudouridine synthase; KEGG: sdn:Sden_0482 pseudouridine synthase YP_735660.1 KEGG: son:SO4182 ATP-dependent protease La (LON) domain protein, putative YP_735661.1 KEGG: sdn:Sden_0480 hypothetical protein YP_735662.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ilo:IL2271 outer membrane protein YP_735663.1 PFAM: conserved hypothetical protein 22; KEGG: son:SO4189 hypothetical protein YP_735664.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_735665.1 KEGG: son:SO4191 DedA family protein YP_735666.1 TIGRFAM: TonB family protein; KEGG: cps:CPS_2467 hypothetical protein YP_735667.1 KEGG: son:SO4193 hypothetical protein YP_735668.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO4194 hypothetical protein YP_735669.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO4195 PAP2 family protein YP_735670.1 KEGG: son:SO4196 hypothetical protein YP_735671.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_735672.1 PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: son:SO4198 arginase family protein YP_735673.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4199 ubiquinone/menaquinone biosynthesis methlytransferase UbiE YP_735674.1 PFAM: protein of unknown function DUF1243; KEGG: son:SO4200 conserved hypothetical protein YP_735675.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: son:SO4201 ubiquinone biosynthesis protein AarF YP_735676.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: son:SO4202 Sec-independent protein translocase protein TatA YP_735677.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: son:SO4203 Sec-independent protein translocase protein TatB YP_735678.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: son:SO4204 Sec-independent periplasmic protein translocation protein TatC YP_735679.1 KEGG: son:SO4205 hypothetical protein YP_735680.1 PFAM: TatD-related deoxyribonuclease; KEGG: son:SO4206 hydrolase, TatD family YP_735681.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: son:SO4207 GGDEF domain protein YP_735682.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_735683.1 KEGG: son:SO0043 hypothetical protein YP_735684.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_735685.1 PFAM: peptidase M23B; KEGG: son:SO4212 peptidase, M23/M37 family YP_735686.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_735687.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_735688.1 TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: son:SO4216 cell division protein FtsA YP_735689.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: son:SO4217 cell division protein FtsQ YP_735690.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_735691.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_735692.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: son:SO4220 cell division protein FtsW YP_735693.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_735694.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_735695.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO4223 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase YP_735696.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_735697.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: son:SO4225 peptidoglycan synthetase FtsI YP_735698.1 TIGRFAM: cell division protein FtsL; PFAM: cell division protein FtsL; KEGG: son:SO4226 cell division protein FtsL YP_735699.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: son:SO4227 putative S-adenosyl methionine adenyltransferase YP_735700.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_735701.1 KEGG: sdn:Sden_0345 PepSY-associated TM helix YP_735702.1 PFAM: ferredoxin; PepSY-associated TM helix domain protein; KEGG: sdn:Sden_0344 ferredoxin YP_735703.1 KEGG: son:SO4229 hypothetical protein YP_735704.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: son:SO4230 glycerol kinase YP_735705.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sdn:Sden_0340 membrane protein involved in aromatic hydrocarbon degradation YP_735706.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_735707.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_735708.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_735709.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_735710.1 SMART: Tetratricopeptide domain protein; KEGG: son:SO4240 hypothetical protein YP_735711.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO4241 ATP-dependent DNA helicase RecQ YP_735712.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO4242 hypothetical protein YP_735713.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4243 rarD protein YP_735714.1 KEGG: son:SO4244 hypothetical protein YP_735715.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_735716.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_735717.1 required for 70S ribosome assembly YP_735718.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_735719.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: son:SO4249 DNA/pantothenate metabolism flavoprotein YP_735720.1 catalyzes the formation of dUMP from dUTP YP_735721.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_735722.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: son:SO4252 prolyl oligopeptidase family protein YP_735723.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_735724.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_735725.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_735726.1 TIGRFAM: conserved hypothetical protein; PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: son:SO4257 conserved hypothetical protein TIGR00255 YP_735727.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily YP_735728.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0369 transcriptional regulator, LysR family YP_735729.1 KEGG: son:SO0366 hypothetical protein YP_735730.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0365 hypothetical permeases of the major facilitator superfamily YP_735731.1 PFAM: aminoglycoside phosphotransferase; KEGG: son:SO0364 hypothetical protein YP_735732.1 KEGG: son:SO0363 hypothetical protein YP_735733.1 KEGG: son:SO0362 hypothetical protein YP_735734.1 Essential for recycling GMP and indirectly, cGMP YP_735735.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_735736.1 KEGG: son:SO0359 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region YP_735737.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: son:SO0358 endoribonuclease L-PSP, putative YP_735738.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0355 AMP-binding protein YP_735739.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: son:SO0354 sodium/calcium exchanger YP_735740.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO0353 TPR domain protein YP_735741.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: son:SO0352 sensor histidine kinase, putative YP_735742.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO0351 DNA-binding response regulator, LuxR family YP_735743.1 KEGG: son:SO0350 hypothetical protein YP_735744.1 KEGG: son:SO0350 hypothetical protein YP_735745.1 KEGG: son:SO0349 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_735746.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0348 acyltransferase family protein YP_735747.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0347 acyltransferase family protein YP_735748.1 PFAM: protein of unknown function DUF523; KEGG: ppu:PP5158 hypothetical protein YP_735749.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: son:SO0346 transcriptional regulator GntR family YP_735750.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_735751.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity YP_735752.1 Catalyzes the conversion of citrate to isocitrate YP_735753.1 TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: son:SO0342 hypothetical protein YP_735754.1 KEGG: son:SO0341 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_735755.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_735756.1 PFAM: protein of unknown function DUF1223; KEGG: hch:HCH_00871 uncharacterized secreted protein YP_735757.1 PFAM: Modulator of Rho-dependent transcription termination; KEGG: son:SO0339 hypothetical transcriptional antiterminator YP_735758.1 KEGG: son:SO0338 hypothetical protein YP_735759.1 PFAM: Endoribonuclease L-PSP; KEGG: son:SO0337 hypothetical translation initiation inhibitor, YjgF family YP_735760.1 PFAM: Na+/H+ antiporter NhaC; KEGG: son:SO0336 hypothetical Na+/H+ antiporter YP_735761.1 PFAM: protein of unknown function DUF904; KEGG: son:SO0335 hypothetical protein YP_735762.1 PFAM: protein of unknown function DUF1107; KEGG: son:SO0334 hypothetical protein YP_735763.1 PFAM: DSBA oxidoreductase; KEGG: son:SO0333 thiol:disulfide interchange protein DsbA YP_735764.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_735765.1 KEGG: son:SO0331 hypothetical protein YP_735766.1 PFAM: protein of unknown function UPF0061; KEGG: son:SO0330 hypothetical protein YP_735767.1 KEGG: son:SO0329 hypothetical protein YP_735768.1 KEGG: son:SO0326 hypothetical protein YP_735769.1 PFAM: DsrE family protein; KEGG: son:SO0325 DsrE-related protein YP_735770.1 KEGG: son:SO0324 hypothetical protein YP_735771.1 KEGG: son:SO0323 hypothetical protein YP_735772.1 KEGG: son:SO0322 hypothetical protein YP_735773.1 KEGG: son:SO0321 hypothetical protein YP_735774.1 PFAM: acyltransferase 3; KEGG: son:SO0320 hypothetical protein YP_735775.1 KEGG: son:SO0319 hypothetical protein YP_735776.1 PFAM: protein of unknown function DUF1232; KEGG: son:SO0318 hypothetical protein YP_735777.1 PFAM: transposase, IS4 family protein; KEGG: son:SO3296 ISSod12, transposase YP_735778.1 PFAM: regulatory protein, LysR; KEGG: vpa:VPA0299 putative transcription regulator protein YP_735779.1 PFAM: Disulphide bond formation protein DsbB; KEGG: hpj:jhp0542 hypothetical protein YP_735780.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dsy:DSY4603 putative anaerobic dehydrogenase YP_735781.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dsy:DSY4602 putative oxidoreductase iron-sulfur subunit YP_735782.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: dsy:DSY4608 uncharacterized component of anaerobic dehydrogenase YP_735783.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO4515 formate dehydrogenase, C subunit, putative YP_735784.1 PFAM: porin, Gram-negative type; KEGG: cps:CPS_3847 porin YP_735785.1 TIGRFAM: YbhB and YbcL; PFAM: PEBP family protein; KEGG: son:SO0316 hypothetical phosphatidylethanolamine-binding protein YP_735786.1 KEGG: vch:VCA1065 hypothetical protein YP_735787.1 PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: son:SO0314 ornithine decarboxylase, inducible YP_735788.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system YP_735789.1 PFAM: porin, Gram-negative type; KEGG: son:SO0312 outer membrane porin, putative YP_735790.1 PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: son:SO0311 hypothetical Fe-S oxidoreductase YP_735791.1 KEGG: son:SO0309 hypothetical protein YP_735792.1 PFAM: protein of unknown function DUF1212; KEGG: son:SO0308 hypothetical protein YP_735793.1 KEGG: son:SO0306 hypothetical protein YP_735794.1 KEGG: son:SO0302 hypothetical protein YP_735795.1 TIGRFAM: cytochrome C family protein; KEGG: son:SO1427 decaheme cytochrome c YP_735796.1 KEGG: son:SO1428 outer membrane protein YP_735797.1 TIGRFAM: Twin-arginine translocation pathway signal; anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO1429 anaerobic dimethyl sulfoxide reductase, A subunit YP_735798.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1430 anaerobic dimethyl sulfoxide reductase, B subunit YP_735799.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO1431 hypothetical protein YP_735800.1 KEGG: son:SO1432 hypothetical protein YP_735801.1 PFAM: KAP P-loop domain protein; KEGG: sdn:Sden_3419 kap P-loop YP_735802.1 KEGG: vpa:VP0643 hypothetical protein YP_735803.1 TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO0301 hypothetical methyltransferase YP_735804.1 PFAM: LppC family lipoprotein; KEGG: son:SO0300 lipoprotein, putative YP_735805.1 PFAM: protein of unknown function UPF0102; KEGG: son:SO0299 predicted endonuclease YP_735806.1 TIGRFAM: phosphoheptose isomerase; KEGG: son:SO0298 phosphoheptose isomerase YP_735807.1 PFAM: transport-associated; KEGG: son:SO0297 lipoprotein, putative YP_735808.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO0296 integral membrane domain protein YP_735809.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0295 transcriptional regulator, LysR family YP_735810.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_735811.1 KEGG: son:SO0293 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_735812.1 KEGG: son:SO0292 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase YP_735813.1 KEGG: son:SO0291 hypothetical protein YP_735814.1 KEGG: son:SO0290 hypothetical protein YP_735815.1 KEGG: son:SO0289 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_735816.1 PFAM: Sporulation domain protein; SMART: AAA ATPase; KEGG: son:SO0288 DamX domain protein YP_735817.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_735818.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_735819.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain protein; KEGG: son:SO0285 type IV pilus biogenesis protein PilQ YP_735820.1 PFAM: Pilus assembly protein, PilQ; KEGG: son:SO0284 type IV pilus biogenesis protein PilP YP_735821.1 PFAM: Pilus assembly protein, PilO; KEGG: son:SO0283 type IV pilus biogenesis protein PilO YP_735822.1 PFAM: Fimbrial assembly family protein; KEGG: son:SO0282 type IV pilus biogenesis protein PilN YP_735823.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: son:SO0281 type IV pilus biogenesis protein PilM YP_735824.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: son:SO0280 penicillin-binding protein 1A YP_735825.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_735826.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_735827.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_735828.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_735829.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_735830.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_735831.1 PFAM: protein of unknown function DUF1439; KEGG: son:SO0273 hypothetical protein YP_735832.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: son:SO0272 competence/damage-inducible protein CinA YP_735833.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: son:SO4502 hypothetical protein YP_735834.1 PFAM: formate dehydrogenase, subunit FdhD; KEGG: son:SO4503 formate dehydrogenase accessory protein FdhD, putative YP_735835.1 KEGG: son:SO4504 hypothetical protein YP_735836.1 KEGG: son:SO4505 hypothetical protein YP_735837.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4506 iron-sulfur cluster-binding protein YP_735838.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO4507 TorA specific chaperone, putative YP_735839.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: son:SO4508 hypothetical protein YP_735840.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4509 formate dehydrogenase, alpha subunit YP_735841.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4510 formate dehydrogenase, iron-sulfur subunit YP_735842.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO4511 formate dehydrogenase, C subunit, putative YP_735843.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: son:SO4512 hypothetical protein YP_735844.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4513 formate dehydrogenase, alpha subunit YP_735845.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4514 formate dehydrogenase, iron-sulfur subunit YP_735846.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO4515 formate dehydrogenase, C subunit, putative YP_735847.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4516 ferric vibriobactin receptor YP_735848.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRB0028 hypothetical methyl-accepting chemotaxisprotein YP_735849.1 PFAM: Bile acid:sodium symporter; KEGG: son:SO4519 sodium-dependent transporter YP_735850.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_735851.1 KEGG: son:SO4521 hypothetical protein YP_735852.1 KEGG: son:SO4522 hypothetical protein YP_735853.1 PFAM: Patatin; KEGG: son:SO4525 hypothetical protein YP_735854.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4525.1 hypothetical transcriptional regulator, LysR family YP_735855.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4527 integral membrane domain protein YP_735856.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO4529 RNA methyltransferase, TrmH family, group 2 YP_735857.1 KEGG: chy:CHY_2509 hypothetical protein YP_735858.1 KEGG: csa:Csal_2904 hypothetical protein YP_735859.1 KEGG: son:SO4535 hypothetical protein YP_735860.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: son:SO4537 peptidase, putative YP_735861.1 PFAM: peptidase M16 domain protein; KEGG: sdn:Sden_3485 peptidase M16-like protein YP_735862.1 PFAM: peptidase M16 domain protein; KEGG: son:SO4537.2 hypothetical Zn-dependent peptidase YP_735863.1 KEGG: sdn:Sden_3487 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_735864.1 KEGG: rfr:Rfer_3046 transcriptional factor YP_735865.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: noc:Noc_2855 cell division protein FtsZ YP_735866.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4550 methyltransferase domain protein YP_735867.1 KEGG: son:SO4551 hypothetical protein YP_735868.1 KEGG: son:SO4552 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_735869.1 PFAM: DTW domain containing protein; KEGG: son:SO4554 hypothetical protein YP_735870.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4555 drug resistance transporter, Bcr/CflA family protein YP_735871.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4556 transcriptional regulator, LysR family YP_735872.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: son:SO4557 methyl-accepting chemotaxis protein YP_735873.1 KEGG: son:SO4558 hypothetical protein YP_735874.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4559 hypothetical protein YP_735875.1 KEGG: son:SO4560 hypothetical protein YP_735876.1 KEGG: son:SO4561 hypothetical protein YP_735877.1 PFAM: protein of unknown function DUF1332; KEGG: son:SO4562 hypothetical protein YP_735878.1 KEGG: son:SO4563 hypothetical protein YP_735879.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO4564 TonB2 protein, putative YP_735880.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function YP_735881.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: son:SO4567 transcriptional regulator, AsnC family YP_735882.1 PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4568 formate-dependent nitrite reductase, nrfD protein YP_735883.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: vvy:VV1252 formate-dependent nitrite reductase complex, Fe-S protein YP_735884.1 KEGG: sfx:S3598 formate-dependent nitrite reductase YP_735886.1 PFAM: regulatory protein, LysR; KEGG: son:SO4571 transcriptional regulator, LysR family YP_735887.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis YP_735888.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO4574 hydrolase, alpha/beta fold family YP_735889.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate YP_735890.1 TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO4576 O-succinylbenzoic acid--CoA ligase YP_735891.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_735892.1 PFAM: protein of unknown function DUF214; KEGG: son:SO4584 cell division ABC transporter, permease protein FtsX YP_735893.1 KEGG: son:SO4585 cell division ABC transporter, ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_735894.1 KEGG: son:SO4586 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase YP_735895.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: son:SO4587 putative methylase YP_735896.1 PFAM: protein of unknown function DUF1145; KEGG: son:SO4588 hypothetical protein YP_735897.1 PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO4591 tetraheme cytochrome c YP_735898.1 KEGG: son:SO4592 hypothetical protein YP_735899.1 KEGG: son:SO4593 hypothetical protein YP_735900.1 KEGG: son:SO4594 hypothetical protein YP_735901.1 KEGG: son:SO4596 copper-transporting ATPase domain protein YP_735902.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO4597 heavy metal efflux system protein, putative YP_735903.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SOA0153 heavy metal efflux pump, CzcA family YP_735904.1 PFAM: ribonuclease T2; KEGG: son:SO4599 ribonuclease, T2 family YP_735905.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vvy:VV1004 methyl-accepting chemotaxis protein YP_735906.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO4600 antigen, putative YP_735907.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: son:SO4601 tryptophan-specific transport protein YP_735908.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA YP_735909.1 Represses a number of genes involved in the response to DNA damage YP_735910.1 KEGG: son:SO4604 hypothetical protein YP_735911.1 PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: son:SO4606 cytochrome c oxidase, subunit II YP_735912.1 PFAM: cytochrome c oxidase, subunit I; KEGG: son:SO4607 cytochrome c oxidase, subunit I YP_735913.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_735914.1 PFAM: cytochrome c oxidase, subunit III; KEGG: son:SO4609 cytochrome c oxidase subunit III YP_735915.1 KEGG: son:SO4610 hypothetical protein YP_735916.1 KEGG: son:SO4611 hypothetical protein YP_735917.1 KEGG: son:SO4612 hypothetical protein YP_735918.1 PFAM: cytochrome oxidase assembly; KEGG: son:SO4613 cytochrome oxidase assembly protein, putative YP_735919.1 converts protoheme IX and farnesyl diphosphate to heme O YP_735920.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: son:SO4615 SCO1/SenC family protein YP_735921.1 PFAM: polysaccharide deacetylase; KEGG: son:SO4616 polysaccharide deacetylase family protein YP_735922.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO4617 DNA-damage-inducible protein F YP_735923.1 PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; phospholipase/Carboxylesterase; KEGG: son:SO4618 prolyl oligopeptidase family protein YP_735924.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source YP_735925.1 KEGG: son:SO4625 competence protein ComF YP_735926.1 TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: son:SO4626 bioH protein YP_735927.1 KEGG: son:SO4627 hypothetical protein YP_735928.1 PFAM: sulfatase; KEGG: son:SO4628 sulfatase YP_735929.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: son:SO4629 hypothetical protein YP_735930.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO4631 transcription elongation factor GreB YP_735931.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation YP_735932.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR YP_735933.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4635 methyl-accepting chemotaxis protein YP_735934.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO4640 antioxidant, AhpC/Tsa family YP_735935.1 KEGG: son:SO4645 hypothetical protein YP_735936.1 PFAM: Propeptide, PepSY amd peptidase M4; KEGG: son:SO4646 hypothetical protein YP_735937.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4647 DNA-binding response regulator YP_735938.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4648 sensor histidine kinase YP_735939.1 KEGG: son:SO4649 hypothetical protein YP_735940.1 KEGG: son:SO4656 hypothetical protein YP_735941.1 KEGG: son:SO4656.2 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_735943.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; KEGG: pha:PSHAa2231 ubiquinol oxidase polypeptide II (cytochrome o subunit 2) (oxidase BO(3) subunit 2) (cytochrome o ubiquinol oxidase subunit 2) (ubiquinol oxidase chain B) YP_735944.1 PFAM: cytochrome c oxidase, subunit I; KEGG: pha:PSHAa2230 ubiquinol oxidase polypeptide I (cytochrome o subunit 1) (oxidase BO(3) subunit 1) (cytochrome o ubiquinol oxidase subunit 1) (ubiquinol oxidase chain A) YP_735945.1 PFAM: cytochrome c oxidase, subunit III; KEGG: pha:PSHAa2229 cytochrome o ubiquinol oxidase subunit III (ubiquinol oxidase chain C) YP_735946.1 PFAM: cytochrome C oxidase subunit IV; KEGG: pha:PSHAa2228 cytochrome o ubiquinol oxidase protein (ubiquinol oxidase chain D) YP_735947.1 converts protoheme IX and farnesyl diphosphate to heme O YP_735948.1 PFAM: protein of unknown function DUF548; KEGG: sdn:Sden_3610 protein of unknown function DUF548 YP_735949.1 PFAM: protein of unknown function DUF519; KEGG: son:SO4659 hypothetical protein YP_735950.1 PFAM: Lytic transglycosylase, catalytic; KEGG: son:SO4660 transglycosylase SLT domain protein YP_735951.1 KEGG: son:SO4661 hypothetical protein YP_735952.1 PFAM: LemA family protein; KEGG: son:SO4662 lemA protein YP_735953.1 PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; short chain fatty acid transporter; KEGG: ppr:PBPRA0142 putative efflux pump component MtrF YP_735956.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO4692 AcrB/AcrD/AcrF family protein YP_735957.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO4693 multidrug resistance protein, AcrA/AcrE family YP_735958.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO4694 hypothetical protein YP_735959.1 KEGG: son:SO4696 hypothetical 3-methyladenine DNA glycosylase YP_735960.1 PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO4697 glutathione S-transferase YP_735961.1 KEGG: son:SO4698 hypothetical protein YP_735962.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO4699 oligopeptidase A YP_735963.1 KEGG: son:SO4700 hypothetical protein YP_735964.1 KEGG: son:SO4701 hypothetical protein YP_735965.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_735966.1 KEGG: vfi:VFA0898 hypothetical protein YP_735967.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: sdn:Sden_0149 sodium/proline symporter YP_735968.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_735969.1 TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: sdn:Sden_0151 gamma-glutamyl phosphate reductase YP_735970.1 KEGG: cps:CPS_0896 hypothetical protein YP_735971.1 PFAM: helix-turn-helix domain protein; KEGG: son:SO4705 transcriptional regulator, putative YP_735972.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_735973.1 PFAM: conserved hypothetical protein 698; KEGG: son:SO4708 hypothetical protein YP_735974.1 KEGG: son:SO4709 hypothetical protein YP_735975.1 PFAM: regulatory protein, LuxR; KEGG: cps:CPS_1945 hypothetical protein YP_735976.1 KEGG: ilo:IL0061 outer membrane protein YP_735977.1 KEGG: cps:CPS_1944 hypothetical protein YP_735978.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cps:CPS_1943 cation efflux system protein CzcA YP_735979.1 KEGG: cps:CPS_1942 hypothetical protein YP_735980.1 PFAM: Paraquat-inducible protein A; KEGG: son:SO4710 hypothetical protein YP_735981.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO4711 HD domain protein YP_735983.1 KEGG: pca:Pcar_2393 hypothetical protein YP_735984.1 KEGG: pca:Pcar_2394 hypothetical protein YP_735985.1 PFAM: cobalt transport protein; KEGG: pca:Pcar_2395 hypothetical protein YP_735986.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4712 ABC transporter, ATP-binding protein, putative YP_735987.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nha:Nham_3500 TonB-dependent receptor YP_735988.1 TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: son:SO4713 menaquinone-specific isochorismate synthase, putative YP_735989.1 KEGG: son:SO4714 hypothetical protein YP_735990.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: son:SO4715 hypothetical protein YP_735991.1 KEGG: son:SO4716 acetyltransferase, GNAT family YP_735992.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4717 sensor histidine kinase YP_735993.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO4718 sigma-54 dependent response regulator YP_735994.1 PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO4719 putative sulfate transport system substrate-binding protein YP_735995.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4720 ABC transporter, permease protein YP_735996.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4721 ABC transporter, ATP-binding protein YP_735997.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: son:SO4722 molybdopterin-guanine dinucleotide biosynthesis protein YP_735998.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin binding domain; molybdopterin-guanine dinucleotide biosynthesis MobB region; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: son:SO4723 molybdopterin biosynthesis MoeA protein, putative YP_735999.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_736000.1 KEGG: son:SO4725 hypothetical protein YP_736001.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_736002.1 PFAM: glycosyl transferase, family 39; KEGG: son:SO4690 hypothetical protein YP_736003.1 KEGG: son:SO4689 hypothetical protein YP_736004.1 PFAM: glycosyl transferase, family 2; KEGG: son:SO4688 glycosyl transferase, group 2 family protein YP_736005.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: son:SO4687 UDP-glucose 6-dehydrogenase YP_736006.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO4686 NAD dependent epimerase/dehydratase family protein YP_736007.1 KEGG: son:SO4685 hypothetical protein YP_736008.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_736009.1 PFAM: glycosyl transferase, group 1; KEGG: son:SO4682 glycosyl transferase, group 1 family protein YP_736010.1 TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; capsule biosynthesis phosphatase; KEGG: vch:VC0232 hypothetical protein YP_736011.1 KEGG: vch:VC0231 hypothetical protein YP_736012.1 KEGG: vch:VC0230 hypothetical protein YP_736013.1 KEGG: vch:VC0228 hypothetical protein YP_736014.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: son:SO4680 hypothetical protein YP_736015.1 PFAM: glycosyl transferase, group 1; KEGG: son:SO4679 glycosyl transferase, group 1 family protein YP_736016.1 PFAM: glycosyl transferase, family 9; KEGG: son:SO4678 heptosyl transferase, glycosyltransferase family 9 protein YP_736017.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position YP_736018.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: son:SO4676 3-deoxy-D-manno-octulosonic-acid (KDO) transferase YP_736019.1 PFAM: regulatory protein, TetR; KEGG: son:SO4675 transcriptional regulator, TetR family YP_736020.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_736021.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_736022.1 PFAM: Rhodanese domain protein; KEGG: son:SO4672 glpE protein YP_736023.1 PFAM: Rhomboid family protein; KEGG: son:SO4671 glpG protein YP_736024.1 PFAM: ThiJ/PfpI domain protein; KEGG: son:SO4670 enhancing lycopene biosynthesis protein YP_736025.1 KEGG: son:SO4669 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2 YP_736026.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_736027.1 PFAM: cytochrome c, class I; KEGG: son:SO4666 cytochrome c YP_736028.1 KEGG: son:SO4727 hypothetical protein YP_736029.1 PFAM: protein of unknown function DUF414; KEGG: son:SO4728 hypothetical protein YP_736030.1 KEGG: son:SO4729 hypothetical protein YP_736031.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_736032.1 catalyzes the formation of inosine from adenosine YP_736033.1 PFAM: protein of unknown function DUF885; KEGG: son:SO4732 hypothetical protein YP_736034.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO4733 lysophospholipase L2 YP_736035.1 KEGG: son:SO4734 sensory box protein; TIGRFAM: PAS sensor protein; PFAM: EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_736036.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4737 iron-sulfur cluster-binding protein YP_736037.1 KEGG: son:SO4738 hypothetical protein YP_736038.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_736039.1 KEGG: son:SO4740 hypothetical protein YP_736040.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_736041.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: son:SO4742 transcriptional regulator, DeoR family YP_736042.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4743 TonB-dependent receptor, putative YP_736043.1 KEGG: son:SO4745 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase YP_736044.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_736045.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_736046.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_736047.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_736048.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_736049.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_736050.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_736051.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_736052.1 PFAM: ATP synthase I chain; KEGG: son:SO4754 ATP synthase protein I YP_736053.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: son:SO4755 ParB family protein YP_736054.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO4756 ParA family protein YP_736055.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_736056.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_736057.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_736058.1 PFAM: TGF-beta receptor, type I/II extracellular region; KEGG: son:SO0002 proton/peptide symporter family protein YP_736059.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_736060.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: son:SO0004 inner membrane protein, 60 kDa YP_736061.1 PFAM: protein of unknown function DUF37; KEGG: son:SO0005 conserved hypothetical protein TIGR00278 YP_736062.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_736063.1 in Escherichia coli transcription of this gene is enhanced by polyamines