-- dump date 20140620_064703 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_961408.1 120596834 4661866 150..1535 1 NC_008750.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1535 dnaA 4661866 dnaA Shewanella sp. W3-18-1 chromosomal replication initiation protein YP_961408.1 150 D 351745 CDS YP_961409.1 120596835 4658220 1556..2656 1 NC_008750.1 KEGG: shm:Shewmr7_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 2656 4658220 Sputw3181_0002 Shewanella sp. W3-18-1 DNA polymerase III subunit beta YP_961409.1 1556 D 351745 CDS YP_961410.1 120596836 4658265 2853..3935 1 NC_008750.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3935 recF 4658265 recF Shewanella sp. W3-18-1 recombination protein F YP_961410.1 2853 D 351745 CDS YP_961411.1 120596837 4658305 3952..6369 1 NC_008750.1 KEGG: son:SO0011 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 6369 4658305 Sputw3181_0004 Shewanella sp. W3-18-1 DNA gyrase subunit B YP_961411.1 3952 D 351745 CDS YP_961412.1 120596838 4658328 6571..7617 1 NC_008750.1 PFAM: HDOD; KEGG: shm:Shewmr7_0007 putative signal transduction protein; putative signal transduction protein 7617 4658328 Sputw3181_0005 Shewanella sp. W3-18-1 putative signal transduction protein YP_961412.1 6571 D 351745 CDS YP_961413.1 120596839 4658458 complement(7705..9774) 1 NC_008750.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 9774 glyS 4658458 glyS Shewanella sp. W3-18-1 glycyl-tRNA synthetase subunit beta YP_961413.1 7705 R 351745 CDS YP_961414.1 120596840 4658902 complement(9785..10690) 1 NC_008750.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 10690 glyQ 4658902 glyQ Shewanella sp. W3-18-1 glycyl-tRNA synthetase subunit alpha YP_961414.1 9785 R 351745 CDS YP_961415.1 120596841 4658958 10808..11410 1 NC_008750.1 KEGG: shm:Shewmr7_0010 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 11410 4658958 Sputw3181_0008 Shewanella sp. W3-18-1 DNA-3-methyladenine glycosylase I YP_961415.1 10808 D 351745 CDS YP_961416.1 120596842 4659201 complement(11528..14716) 1 NC_008750.1 PFAM: peptidase S9B, dipeptidylpeptidase IV domain protein; amidohydrolase; WD40 domain protein beta Propeller; KEGG: she:Shewmr4_0011 amidohydrolase; amidohydrolase 14716 4659201 Sputw3181_0009 Shewanella sp. W3-18-1 amidohydrolase YP_961416.1 11528 R 351745 CDS YP_961417.1 120596843 4659470 complement(14938..15390) 1 NC_008750.1 KEGG: she:Shewmr4_0012 hypothetical protein; hypothetical protein 15390 4659470 Sputw3181_0010 Shewanella sp. W3-18-1 hypothetical protein YP_961417.1 14938 R 351745 CDS YP_961418.1 120596844 4659529 complement(15435..15680) 1 NC_008750.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 15680 4659529 Sputw3181_0011 Shewanella sp. W3-18-1 sulfur transfer protein SirA YP_961418.1 15435 R 351745 CDS YP_961419.1 120596845 4659619 complement(15911..17074) 1 NC_008750.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 17074 fadA 4659619 fadA Shewanella sp. W3-18-1 3-ketoacyl-CoA thiolase YP_961419.1 15911 R 351745 CDS YP_961420.1 120596846 4659680 complement(17097..19247) 1 NC_008750.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 19247 fadB 4659680 fadB Shewanella sp. W3-18-1 multifunctional fatty acid oxidation complex subunit alpha YP_961420.1 17097 R 351745 CDS YP_961421.1 120596847 4659656 19738..21060 1 NC_008750.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 21060 4659656 Sputw3181_0014 Shewanella sp. W3-18-1 proline dipeptidase YP_961421.1 19738 D 351745 CDS YP_961422.1 120596848 4660140 21088..21702 1 NC_008750.1 PFAM: protein of unknown function UPF0029; KEGG: shm:Shewmr7_0018 protein of unknown function UPF0029; hypothetical protein 21702 4660140 Sputw3181_0015 Shewanella sp. W3-18-1 hypothetical protein YP_961422.1 21088 D 351745 CDS YP_961423.1 120596849 4660168 21780..23237 1 NC_008750.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: she:Shewmr4_0021 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 23237 4660168 Sputw3181_0016 Shewanella sp. W3-18-1 TrkH family potassium uptake protein YP_961423.1 21780 D 351745 CDS YP_961424.1 120596850 4660200 23240..23764 1 NC_008750.1 KEGG: shm:Shewmr7_0020 protoporphyrinogen oxidase; protoporphyrinogen oxidase 23764 4660200 Sputw3181_0017 Shewanella sp. W3-18-1 protoporphyrinogen oxidase YP_961424.1 23240 D 351745 CDS YP_961425.1 120596851 4660627 complement(23815..24123) 1 NC_008750.1 PFAM: regulatory protein, ArsR; KEGG: shm:Shewmr7_0021 transcriptional regulator, ArsR family; regulatory protein ArsR 24123 4660627 Sputw3181_0018 Shewanella sp. W3-18-1 regulatory protein ArsR YP_961425.1 23815 R 351745 CDS YP_961426.1 120596852 4660787 24326..24880 1 NC_008750.1 KEGG: she:Shewmr4_0024 protoporphyrinogen oxidase; protoporphyrinogen oxidase 24880 4660787 Sputw3181_0019 Shewanella sp. W3-18-1 protoporphyrinogen oxidase YP_961426.1 24326 D 351745 CDS YP_961427.1 120596853 4660838 complement(24920..26362) 1 NC_008750.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: she:Shewmr4_0025 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 26362 4660838 Sputw3181_0020 Shewanella sp. W3-18-1 TrkH family potassium uptake protein YP_961427.1 24920 R 351745 CDS YP_961428.1 120596854 4660419 complement(26383..27792) 1 NC_008750.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 27792 trkA 4660419 trkA Shewanella sp. W3-18-1 potassium transporter peripheral membrane protein YP_961428.1 26383 R 351745 CDS YP_961429.1 120596855 4660947 complement(27808..29097) 1 NC_008750.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: she:Shewmr4_0027 sun protein; sun protein 29097 4660947 Sputw3181_0022 Shewanella sp. W3-18-1 sun protein YP_961429.1 27808 R 351745 CDS YP_961430.1 120596856 4661562 complement(29100..30056) 1 NC_008750.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: shm:Shewmr7_0026 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 30056 4661562 Sputw3181_0023 Shewanella sp. W3-18-1 methionyl-tRNA formyltransferase YP_961430.1 29100 R 351745 CDS YP_961431.1 120596857 4660759 complement(30066..30578) 1 NC_008750.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 30578 def 4660759 def Shewanella sp. W3-18-1 peptide deformylase YP_961431.1 30066 R 351745 CDS YP_961432.1 120596858 4660653 30704..31828 1 NC_008750.1 PFAM: Peptidoglycan-binding LysM; KEGG: shm:Shewmr7_0028 peptidoglycan-binding LysM; peptidoglycan-binding LysM 31828 4660653 Sputw3181_0025 Shewanella sp. W3-18-1 peptidoglycan-binding LysM YP_961432.1 30704 D 351745 CDS YP_961433.1 120596859 4660376 31907..32929 1 NC_008750.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: she:Shewmr4_0031 DNA protecting protein DprA; DNA protecting protein DprA 32929 4660376 Sputw3181_0026 Shewanella sp. W3-18-1 DNA protecting protein DprA YP_961433.1 31907 D 351745 CDS YP_961434.1 120596860 4660360 32932..33405 1 NC_008750.1 PFAM: protein of unknown function DUF494; KEGG: son:SO0035 Smg protein; hypothetical protein 33405 4660360 Sputw3181_0027 Shewanella sp. W3-18-1 hypothetical protein YP_961434.1 32932 D 351745 CDS YP_961435.1 120596861 4660332 33519..34088 1 NC_008750.1 PFAM: DNA topoisomerase, type IA, zn finger domain protein; KEGG: shm:Shewmr7_0031 DNA topoisomerase, type IA, zn finger domain protein; DNA topoisomerase type IA Zn finger domain-containing protein 34088 4660332 Sputw3181_0028 Shewanella sp. W3-18-1 DNA topoisomerase type IA Zn finger domain-containing protein YP_961435.1 33519 D 351745 CDS YP_961436.1 120596862 4660083 34236..34802 1 NC_008750.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: son:SO0037 Sua5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 34802 4660083 Sputw3181_0029 Shewanella sp. W3-18-1 Sua5/YciO/YrdC/YwlC family protein YP_961436.1 34236 D 351745 CDS YP_961437.1 120596863 4659988 34828..35736 1 NC_008750.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 35736 4659988 Sputw3181_0030 Shewanella sp. W3-18-1 coproporphyrinogen III oxidase YP_961437.1 34828 D 351745 CDS YP_961438.1 120596864 4659788 complement(35771..36208) 1 NC_008750.1 PFAM: globin; KEGG: son:SO0039 hypothetical globin; globin 36208 4659788 Sputw3181_0031 Shewanella sp. W3-18-1 globin YP_961438.1 35771 R 351745 CDS YP_961439.1 120596865 4659779 36350..37198 1 NC_008750.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 37198 aroE 4659779 aroE Shewanella sp. W3-18-1 shikimate 5-dehydrogenase YP_961439.1 36350 D 351745 CDS YP_961440.1 120596866 4659386 37204..37479 1 NC_008750.1 PFAM: protein of unknown function DUF1488; KEGG: shm:Shewmr7_0036 protein of unknown function DUF1488; hypothetical protein 37479 4659386 Sputw3181_0033 Shewanella sp. W3-18-1 hypothetical protein YP_961440.1 37204 D 351745 CDS YP_961441.1 120596867 4659119 complement(37613..38161) 1 NC_008750.1 KEGG: shm:Shewmr7_0037 carbonic anhydrase, family 3; carbonic anhydrase 38161 4659119 Sputw3181_0034 Shewanella sp. W3-18-1 carbonic anhydrase YP_961441.1 37613 R 351745 CDS YP_961442.1 120596868 4661274 44067..46517 1 NC_008750.1 KEGG: shm:Shewmr7_4007 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 46517 4661274 Sputw3181_0035 Shewanella sp. W3-18-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_961442.1 44067 D 351745 CDS YP_961443.1 120596869 4658589 complement(46474..47457) 1 NC_008750.1 PFAM: alpha/beta hydrolase fold; KEGG: she:Shewmr4_3914 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 47457 4658589 Sputw3181_0036 Shewanella sp. W3-18-1 alpha/beta hydrolase fold domain-containing protein YP_961443.1 46474 R 351745 CDS YP_961444.1 120596870 4658615 complement(47553..49364) 1 NC_008750.1 PFAM: protein of unknown function DUF885; KEGG: shm:Shewmr7_4005 protein of unknown function DUF885; hypothetical protein 49364 4658615 Sputw3181_0037 Shewanella sp. W3-18-1 hypothetical protein YP_961444.1 47553 R 351745 CDS YP_961445.1 120596871 4658794 49575..50570 1 NC_008750.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 50570 4658794 Sputw3181_0038 Shewanella sp. W3-18-1 adenosine deaminase YP_961445.1 49575 D 351745 CDS YP_961446.1 120596872 4658564 complement(50667..52007) 1 NC_008750.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 52007 4658564 Sputw3181_0039 Shewanella sp. W3-18-1 coproporphyrinogen III oxidase YP_961446.1 50667 R 351745 CDS YP_961447.1 120596873 4658569 complement(52292..52759) 1 NC_008750.1 KEGG: shm:Shewmr7_4002 hypothetical protein; hypothetical protein 52759 4658569 Sputw3181_0040 Shewanella sp. W3-18-1 hypothetical protein YP_961447.1 52292 R 351745 CDS YP_961448.1 120596874 4658704 complement(52829..53380) 1 NC_008750.1 PFAM: protein of unknown function DUF414; KEGG: son:SO4728 hypothetical protein; hypothetical protein 53380 4658704 Sputw3181_0041 Shewanella sp. W3-18-1 hypothetical protein YP_961448.1 52829 R 351745 CDS YP_961449.1 120596875 4658137 complement(53471..54109) 1 NC_008750.1 KEGG: son:SO4727 hypothetical protein; hypothetical protein 54109 4658137 Sputw3181_0042 Shewanella sp. W3-18-1 hypothetical protein YP_961449.1 53471 R 351745 CDS YP_961450.1 120596876 4657707 complement(54928..55551) 1 NC_008750.1 PFAM: cytochrome c, class I; KEGG: son:SO4666 cytochrome c; cytochrome c, class I 55551 4657707 Sputw3181_0043 Shewanella sp. W3-18-1 cytochrome c, class I YP_961450.1 54928 R 351745 CDS YP_961451.1 120596877 4657828 55721..56380 1 NC_008750.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 56380 engB 4657828 engB Shewanella sp. W3-18-1 ribosome biogenesis GTP-binding protein YsxC YP_961451.1 55721 D 351745 CDS YP_961452.1 120596878 4657782 complement(57192..59960) 1 NC_008750.1 KEGG: shm:Shewmr7_3997 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I 59960 4657782 Sputw3181_0045 Shewanella sp. W3-18-1 DNA polymerase I YP_961452.1 57192 R 351745 CDS YP_961453.1 120596879 4658359 60347..61009 1 NC_008750.1 PFAM: ThiJ/PfpI domain protein; KEGG: son:SO4670 enhancing lycopene biosynthesis protein; isoprenoid biosynthesis protein with amidotransferase-like domain 61009 4658359 Sputw3181_0046 Shewanella sp. W3-18-1 isoprenoid biosynthesis protein with amidotransferase-like domain YP_961453.1 60347 D 351745 CDS YP_961454.1 120596880 4658370 complement(61096..61941) 1 NC_008750.1 PFAM: Rhomboid family protein; KEGG: shm:Shewmr7_3995 rhomboid family protein; rhomboid family protein 61941 4658370 Sputw3181_0047 Shewanella sp. W3-18-1 rhomboid family protein YP_961454.1 61096 R 351745 CDS YP_961455.1 120596881 4658333 complement(61938..62243) 1 NC_008750.1 PFAM: Rhodanese domain protein; KEGG: shm:Shewmr7_3994 rhodanese domain protein; rhodanese domain-containing protein 62243 4658333 Sputw3181_0048 Shewanella sp. W3-18-1 rhodanese domain-containing protein YP_961455.1 61938 R 351745 CDS YP_961456.1 120596882 4657836 complement(62354..63379) 1 NC_008750.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 63379 tdh 4657836 tdh Shewanella sp. W3-18-1 L-threonine 3-dehydrogenase YP_961456.1 62354 R 351745 CDS YP_961457.1 120596883 4657838 complement(63391..64584) 1 NC_008750.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 64584 4657838 Sputw3181_0050 Shewanella sp. W3-18-1 2-amino-3-ketobutyrate coenzyme A ligase YP_961457.1 63391 R 351745 CDS YP_961458.1 120596884 4657923 complement(64872..65519) 1 NC_008750.1 PFAM: regulatory protein, TetR; KEGG: son:SO4675 transcriptional regulator, TetR family; TetR family transcriptional regulator 65519 4657923 Sputw3181_0051 Shewanella sp. W3-18-1 TetR family transcriptional regulator YP_961458.1 64872 R 351745 CDS YP_961459.1 120596885 4658011 65662..66927 1 NC_008750.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: she:Shewmr4_3898 three-deoxy-D-manno-octulosonic-acid transferase domain protein; 3-deoxy-D-manno-octulosonic-acid transferase 66927 4658011 Sputw3181_0052 Shewanella sp. W3-18-1 3-deoxy-D-manno-octulosonic-acid transferase YP_961459.1 65662 D 351745 CDS YP_961460.1 120596886 4658069 complement(66978..67730) 1 NC_008750.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 67730 4658069 Sputw3181_0053 Shewanella sp. W3-18-1 3-deoxy-D-manno-octulosonic-acid kinase YP_961460.1 66978 R 351745 CDS YP_961461.1 120596887 4658161 67829..68872 1 NC_008750.1 PFAM: glycosyl transferase, family 9; KEGG: son:SO4678 heptosyl transferase, glycosyltransferase family 9 protein; glycosyl transferase family protein 68872 4658161 Sputw3181_0054 Shewanella sp. W3-18-1 glycosyl transferase family protein YP_961461.1 67829 D 351745 CDS YP_961462.1 120596888 4658191 68961..70046 1 NC_008750.1 PFAM: glycosyl transferase, group 1; KEGG: son:SO4679 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 70046 4658191 Sputw3181_0055 Shewanella sp. W3-18-1 group 1 glycosyl transferase YP_961462.1 68961 D 351745 CDS YP_961463.1 120596889 4658206 70077..71156 1 NC_008750.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: son:SO4680 hypothetical protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 71156 4658206 Sputw3181_0056 Shewanella sp. W3-18-1 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_961463.1 70077 D 351745 CDS YP_961464.1 120596890 4658256 71321..72280 1 NC_008750.1 PFAM: glycosyl transferase, family 2; KEGG: bfs:BF0187 putative glycosyltransferase; glycosyl transferase family protein 72280 4658256 Sputw3181_0057 Shewanella sp. W3-18-1 glycosyl transferase family protein YP_961464.1 71321 D 351745 CDS YP_961465.1 120596891 4658266 complement(72561..73634) 1 NC_008750.1 PFAM: glycosyl transferase, group 1; KEGG: she:Shewmr4_3889 glycosyl transferase, group 1; group 1 glycosyl transferase 73634 4658266 Sputw3181_0058 Shewanella sp. W3-18-1 group 1 glycosyl transferase YP_961465.1 72561 R 351745 CDS YP_961466.1 120596892 4658272 complement(74334..76175) 1 NC_008750.1 PFAM: sulfatase; KEGG: vvy:VV0298 predicted hydrolase; sulfatase 76175 4658272 Sputw3181_0059 Shewanella sp. W3-18-1 sulfatase YP_961466.1 74334 R 351745 CDS YP_961467.1 120596893 4658308 76556..77047 1 NC_008750.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 77047 coaD 4658308 coaD Shewanella sp. W3-18-1 phosphopantetheine adenylyltransferase YP_961467.1 76556 D 351745 CDS YP_961468.1 120596894 4658318 77138..78613 1 NC_008750.1 KEGG: shm:Shewmr7_3982 hypothetical protein; hypothetical protein 78613 4658318 Sputw3181_0061 Shewanella sp. W3-18-1 hypothetical protein YP_961468.1 77138 D 351745 CDS YP_961469.1 120596895 4658321 complement(78679..79686) 1 NC_008750.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: shm:Shewmr7_3979 UDP-glucuronate 5'-epimerase; NAD-dependent epimerase/dehydratase 79686 4658321 Sputw3181_0062 Shewanella sp. W3-18-1 NAD-dependent epimerase/dehydratase YP_961469.1 78679 R 351745 CDS YP_961470.1 120596896 4658326 complement(79710..80873) 1 NC_008750.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: son:SO4687 UDP-glucose 6-dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase 80873 4658326 Sputw3181_0063 Shewanella sp. W3-18-1 UDP-glucose/GDP-mannose dehydrogenase YP_961470.1 79710 R 351745 CDS YP_961471.1 120596897 4658329 81108..81839 1 NC_008750.1 PFAM: glycosyl transferase, family 2; KEGG: she:Shewmr4_3884 glycosyl transferase, family 2; glycosyl transferase family protein 81839 4658329 Sputw3181_0064 Shewanella sp. W3-18-1 glycosyl transferase family protein YP_961471.1 81108 D 351745 CDS YP_961472.1 120596898 4658335 81841..82506 1 NC_008750.1 KEGG: shm:Shewmr7_3976 hypothetical protein; hypothetical protein 82506 4658335 Sputw3181_0065 Shewanella sp. W3-18-1 hypothetical protein YP_961472.1 81841 D 351745 CDS YP_961473.1 120596899 4658430 82516..84240 1 NC_008750.1 PFAM: glycosyl transferase, family 39; KEGG: shm:Shewmr7_3975 glycosyl transferase, family 39; glycosyl transferase family protein 84240 4658430 Sputw3181_0066 Shewanella sp. W3-18-1 glycosyl transferase family protein YP_961473.1 82516 D 351745 CDS YP_961474.1 120596900 4658358 complement(84303..85118) 1 NC_008750.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 85118 4658358 Sputw3181_0067 Shewanella sp. W3-18-1 formamidopyrimidine-DNA glycosylase YP_961474.1 84303 R 351745 CDS YP_961475.1 120596901 4661203 complement(85154..85609) 1 NC_008750.1 KEGG: son:SO4725 hypothetical protein; hypothetical protein 85609 4661203 Sputw3181_0068 Shewanella sp. W3-18-1 hypothetical protein YP_961475.1 85154 R 351745 CDS YP_961476.1 120596902 4659040 complement(85700..86683) 1 NC_008750.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 86683 4659040 Sputw3181_0069 Shewanella sp. W3-18-1 molybdenum cofactor biosynthesis protein A YP_961476.1 85700 R 351745 CDS YP_961477.1 120596903 4658994 complement(86700..88511) 1 NC_008750.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin binding domain; molybdopterin-guanine dinucleotide biosynthesis MobB region; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: she:Shewmr4_3878 molybdopterin-guanine dinucleotide biosynthesis protein B; putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA 88511 4658994 Sputw3181_0070 Shewanella sp. W3-18-1 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA YP_961477.1 86700 R 351745 CDS YP_961478.1 120596904 4658630 complement(88548..89138) 1 NC_008750.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: son:SO4722 molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein MobA 89138 4658630 Sputw3181_0071 Shewanella sp. W3-18-1 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_961478.1 88548 R 351745 CDS YP_961479.1 120596905 4658373 complement(89122..89832) 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3969 ABC transporter related; ABC transporter-like protein 89832 4658373 Sputw3181_0072 Shewanella sp. W3-18-1 ABC transporter-like protein YP_961479.1 89122 R 351745 CDS YP_961480.1 120596906 4658720 complement(89836..90543) 1 NC_008750.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_3968 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 90543 4658720 Sputw3181_0073 Shewanella sp. W3-18-1 binding-protein-dependent transport system inner membrane protein YP_961480.1 89836 R 351745 CDS YP_961481.1 120596907 4658847 complement(90540..91364) 1 NC_008750.1 PFAM: extracellular solute-binding protein, family 1; KEGG: she:Shewmr4_3874 extracellular solute-binding protein, family 1; extracellular solute-binding protein 91364 4658847 Sputw3181_0074 Shewanella sp. W3-18-1 extracellular solute-binding protein YP_961481.1 90540 R 351745 CDS YP_961482.1 120596908 4658619 91602..93032 1 NC_008750.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_3966 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator 93032 4658619 Sputw3181_0075 Shewanella sp. W3-18-1 two component, sigma54 specific, Fis family transcriptional regulator YP_961482.1 91602 D 351745 CDS YP_961483.1 120596909 4658926 93034..95157 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_3965 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 95157 4658926 Sputw3181_0076 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_961483.1 93034 D 351745 CDS YP_961484.1 120596910 4658936 complement(95384..95842) 1 NC_008750.1 KEGG: she:Shewmr4_3871 acetyltransferase, GNAT family; acetyltransferase 95842 4658936 Sputw3181_0077 Shewanella sp. W3-18-1 acetyltransferase YP_961484.1 95384 R 351745 CDS YP_961485.1 120596911 4658951 complement(95942..96601) 1 NC_008750.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: son:SO4715 hypothetical protein; hypothetical protein 96601 4658951 Sputw3181_0078 Shewanella sp. W3-18-1 hypothetical protein YP_961485.1 95942 R 351745 CDS YP_961486.1 120596912 4658989 96843..97577 1 NC_008750.1 KEGG: she:Shewmr4_3869 hypothetical protein; hypothetical protein 97577 4658989 Sputw3181_0079 Shewanella sp. W3-18-1 hypothetical protein YP_961486.1 96843 D 351745 CDS YP_961487.1 120596913 4658998 complement(97611..98969) 1 NC_008750.1 TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: she:Shewmr4_3868 isochorismate synthases; isochorismate synthase 98969 4658998 Sputw3181_0080 Shewanella sp. W3-18-1 isochorismate synthase YP_961487.1 97611 R 351745 CDS YP_961488.1 120596914 4658995 99594..100940 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_3866 ABC transporter related; ABC transporter-like protein 100940 4658995 Sputw3181_0081 Shewanella sp. W3-18-1 ABC transporter-like protein YP_961488.1 99594 D 351745 CDS YP_961489.1 120596915 4659014 101205..102395 1 NC_008750.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO4711 HD domain protein; metal dependent phosphohydrolase 102395 4659014 Sputw3181_0082 Shewanella sp. W3-18-1 metal dependent phosphohydrolase YP_961489.1 101205 D 351745 CDS YP_961490.1 120596916 4659155 102500..103123 1 NC_008750.1 PFAM: Paraquat-inducible protein A; KEGG: shm:Shewmr7_3953 paraquat-inducible protein A; paraquat-inducible protein A 103123 4659155 Sputw3181_0083 Shewanella sp. W3-18-1 paraquat-inducible protein A YP_961490.1 102500 D 351745 CDS YP_961491.1 120596917 4659160 103372..103518 1 NC_008750.1 KEGG: shm:Shewmr7_3947 hypothetical protein; hypothetical protein 103518 4659160 Sputw3181_0084 Shewanella sp. W3-18-1 hypothetical protein YP_961491.1 103372 D 351745 CDS YP_961492.1 120596918 4659180 complement(103539..104489) 1 NC_008750.1 PFAM: conserved hypothetical protein 698; KEGG: shm:Shewmr7_3946 conserved hypothetical protein 698; hypothetical protein 104489 4659180 Sputw3181_0085 Shewanella sp. W3-18-1 hypothetical protein YP_961492.1 103539 R 351745 CDS YP_961493.1 120596919 4659028 complement(104777..105340) 1 NC_008750.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 105340 4659028 Sputw3181_0086 Shewanella sp. W3-18-1 malate synthase YP_961493.1 104777 R 351745 CDS YP_961494.1 120596920 4659337 105594..107123 1 NC_008750.1 PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_3944 transcriptional regulator, XRE family; XRE family transcriptional regulator 107123 4659337 Sputw3181_0087 Shewanella sp. W3-18-1 XRE family transcriptional regulator YP_961494.1 105594 D 351745 CDS YP_961495.1 120596921 4659374 107492..108394 1 NC_008750.1 PFAM: homocysteine S-methyltransferase; KEGG: ppu:PP_0658 homocysteine S-methyltransferase family protein; homocysteine S-methyltransferase 108394 4659374 Sputw3181_0088 Shewanella sp. W3-18-1 homocysteine S-methyltransferase YP_961495.1 107492 D 351745 CDS YP_961496.1 120596922 4659487 108404..109801 1 NC_008750.1 PFAM: amino acid permease-associated region; KEGG: pmu:PM0162 arginine/ornithine antiporter, putative; amino acid permease-associated protein 109801 4659487 Sputw3181_0089 Shewanella sp. W3-18-1 amino acid permease-associated protein YP_961496.1 108404 D 351745 CDS YP_961497.1 120596923 4659518 110012..112213 1 NC_008750.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_0950 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 112213 4659518 Sputw3181_0090 Shewanella sp. W3-18-1 TonB-dependent siderophore receptor YP_961497.1 110012 D 351745 CDS YP_961498.1 120596924 4659520 complement(112352..113299) 1 NC_008750.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 113299 4659520 Sputw3181_0091 Shewanella sp. W3-18-1 protoheme IX farnesyltransferase YP_961498.1 112352 R 351745 CDS YP_961499.1 120596925 4659521 complement(113313..113654) 1 NC_008750.1 PFAM: cytochrome C oxidase subunit IV; KEGG: shm:Shewmr7_3917 cytochrome c oxidase subunit IV; cytochrome C oxidase subunit IV 113654 4659521 Sputw3181_0092 Shewanella sp. W3-18-1 cytochrome C oxidase subunit IV YP_961499.1 113313 R 351745 CDS YP_961500.1 120596926 4659629 complement(113654..114274) 1 NC_008750.1 PFAM: cytochrome c oxidase, subunit III; KEGG: she:Shewmr4_3825 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 114274 4659629 Sputw3181_0093 Shewanella sp. W3-18-1 cytochrome c oxidase subunit III YP_961500.1 113654 R 351745 CDS YP_961501.1 120596927 4659569 complement(114276..116255) 1 NC_008750.1 PFAM: cytochrome c oxidase, subunit I; KEGG: shm:Shewmr7_3915 cytochrome-c oxidase; cytochrome-c oxidase 116255 4659569 Sputw3181_0094 Shewanella sp. W3-18-1 cytochrome-c oxidase YP_961501.1 114276 R 351745 CDS YP_961502.1 120596928 4659602 complement(116258..117334) 1 NC_008750.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; KEGG: she:Shewmr4_3823 ubiquinol oxidase, subunit II; ubiquinol oxidase subunit II 117334 4659602 Sputw3181_0095 Shewanella sp. W3-18-1 ubiquinol oxidase subunit II YP_961502.1 116258 R 351745 CDS YP_961503.1 120596929 4659605 complement(117524..117913) 1 NC_008750.1 KEGG: she:Shewmr4_3822 hypothetical protein; hypothetical protein 117913 4659605 Sputw3181_0096 Shewanella sp. W3-18-1 hypothetical protein YP_961503.1 117524 R 351745 CDS YP_961504.1 120596930 4659594 118314..121964 1 NC_008750.1 KEGG: shm:Shewmr7_3912 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase 121964 4659594 Sputw3181_0097 Shewanella sp. W3-18-1 PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase YP_961504.1 118314 D 351745 CDS YP_961505.1 120596931 4659610 122043..122519 1 NC_008750.1 KEGG: son:SO4656 hypothetical protein; hypothetical protein 122519 4659610 Sputw3181_0098 Shewanella sp. W3-18-1 hypothetical protein YP_961505.1 122043 D 351745 CDS YP_961506.1 120596932 4659811 complement(122585..124057) 1 NC_008750.1 KEGG: shm:Shewmr7_3910 hypothetical protein; hypothetical protein 124057 4659811 Sputw3181_0099 Shewanella sp. W3-18-1 hypothetical protein YP_961506.1 122585 R 351745 CDS YP_961507.1 120596933 4659600 complement(124197..125561) 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO4648 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 125561 4659600 Sputw3181_0100 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_961507.1 124197 R 351745 CDS YP_961508.1 120596934 4659846 complement(125554..126249) 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4647 DNA-binding response regulator; two component transcriptional regulator 126249 4659846 Sputw3181_0101 Shewanella sp. W3-18-1 two component transcriptional regulator YP_961508.1 125554 R 351745 CDS YP_961509.1 120596935 4660188 complement(126252..126554) 1 NC_008750.1 PFAM: Propeptide, PepSY amd peptidase M4; KEGG: shm:Shewmr7_3907 propeptide, PepSY amd peptidase M4; peptidase 126554 4660188 Sputw3181_0102 Shewanella sp. W3-18-1 peptidase YP_961509.1 126252 R 351745 CDS YP_961510.1 120596936 4660187 126959..127903 1 NC_008750.1 KEGG: shm:Shewmr7_3906 hypothetical protein; hypothetical protein 127903 4660187 Sputw3181_0103 Shewanella sp. W3-18-1 hypothetical protein YP_961510.1 126959 D 351745 CDS YP_961511.1 120596937 4659607 127985..128458 1 NC_008750.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_3905 redoxin domain protein; redoxin domain-containing protein 128458 4659607 Sputw3181_0104 Shewanella sp. W3-18-1 redoxin domain-containing protein YP_961511.1 127985 D 351745 CDS YP_961512.1 120596938 4659963 complement(128539..130521) 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3904 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 130521 4659963 Sputw3181_0105 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_961512.1 128539 R 351745 CDS YP_961513.1 120596939 4659995 complement(130650..131966) 1 NC_008750.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 131966 envZ 4659995 envZ Shewanella sp. W3-18-1 osmolarity sensor protein YP_961513.1 130650 R 351745 CDS YP_961514.1 120596940 4660021 complement(132009..132734) 1 NC_008750.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 132734 ompR 4660021 ompR Shewanella sp. W3-18-1 osmolarity response regulator YP_961514.1 132009 R 351745 CDS YP_961515.1 120596941 4660107 133111..133614 1 NC_008750.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: she:Shewmr4_3810 transcription elongation factor GreB; transcription elongation factor GreB 133614 4660107 Sputw3181_0108 Shewanella sp. W3-18-1 transcription elongation factor GreB YP_961515.1 133111 D 351745 CDS YP_961516.1 120596942 4660127 133702..136143 1 NC_008750.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: son:SO4629 hypothetical protein; RNA-binding S1 domain-containing protein 136143 4660127 Sputw3181_0109 Shewanella sp. W3-18-1 RNA-binding S1 domain-containing protein YP_961516.1 133702 D 351745 CDS YP_961517.1 120596943 4660133 136360..138324 1 NC_008750.1 PFAM: sulfatase; KEGG: shm:Shewmr7_3884 sulfatase; sulfatase 138324 4660133 Sputw3181_0110 Shewanella sp. W3-18-1 sulfatase YP_961517.1 136360 D 351745 CDS YP_961518.1 120596944 4660165 complement(138388..138945) 1 NC_008750.1 KEGG: she:Shewmr4_3807 hypothetical protein; hypothetical protein 138945 4660165 Sputw3181_0111 Shewanella sp. W3-18-1 hypothetical protein YP_961518.1 138388 R 351745 CDS YP_961519.1 120596945 4659845 complement(139007..139729) 1 NC_008750.1 TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: shm:Shewmr7_3882 BioH protein; bioH protein 139729 4659845 Sputw3181_0112 Shewanella sp. W3-18-1 bioH protein YP_961519.1 139007 R 351745 CDS YP_961520.1 120596946 4660171 139833..140621 1 NC_008750.1 KEGG: son:SO4625 competence protein ComF; competence protein ComF 140621 4660171 Sputw3181_0113 Shewanella sp. W3-18-1 competence protein ComF YP_961520.1 139833 D 351745 CDS YP_961521.1 120596947 4660976 140789..141535 1 NC_008750.1 PFAM: regulatory protein, LuxR; KEGG: son:SO4624 transcriptional regulator, LuxR family; response regulator receiver protein 141535 4660976 Sputw3181_0114 Shewanella sp. W3-18-1 response regulator receiver protein YP_961521.1 140789 D 351745 CDS YP_961522.1 120596948 4660438 141538..142215 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4623 DNA-binding response regulator; two component transcriptional regulator 142215 4660438 Sputw3181_0115 Shewanella sp. W3-18-1 two component transcriptional regulator YP_961522.1 141538 D 351745 CDS YP_961523.1 120596949 4660448 142202..143443 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4622 sensor histidine kinase; ATPase domain-containing protein 143443 4660448 Sputw3181_0116 Shewanella sp. W3-18-1 ATPase domain-containing protein YP_961523.1 142202 D 351745 CDS YP_961524.1 120596950 4660204 143623..144387 1 NC_008750.1 KEGG: son:SO4621 hypothetical protein; hypothetical protein 144387 4660204 Sputw3181_0117 Shewanella sp. W3-18-1 hypothetical protein YP_961524.1 143623 D 351745 CDS YP_961525.1 120596951 4659688 144480..146228 1 NC_008750.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO4620 fumarate reductase, flavoprotein subunit precursor; flavocytochrome c 146228 4659688 Sputw3181_0118 Shewanella sp. W3-18-1 flavocytochrome c YP_961525.1 144480 D 351745 CDS YP_961526.1 120596952 4660552 146468..147046 1 NC_008750.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 147046 4660552 Sputw3181_0119 Shewanella sp. W3-18-1 putative DNA uptake protein YP_961526.1 146468 D 351745 CDS YP_961527.1 120596953 4660705 complement(147258..147464) 1 NC_008750.1 hypothetical protein 147464 4660705 Sputw3181_0120 Shewanella sp. W3-18-1 hypothetical protein YP_961527.1 147258 R 351745 CDS YP_961528.1 120596954 4660795 complement(147821..148765) 1 NC_008750.1 KEGG: rpe:RPE_0798 hypothetical protein; hypothetical protein 148765 4660795 Sputw3181_0121 Shewanella sp. W3-18-1 hypothetical protein YP_961528.1 147821 R 351745 CDS YP_961529.1 120596955 4660831 complement(148917..149477) 1 NC_008750.1 hypothetical protein 149477 4660831 Sputw3181_0122 Shewanella sp. W3-18-1 hypothetical protein YP_961529.1 148917 R 351745 CDS YP_961530.1 120596956 4660839 complement(150192..151481) 1 NC_008750.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO4617 DNA-damage-inducible protein F; MATE efflux family protein 151481 4660839 Sputw3181_0123 Shewanella sp. W3-18-1 MATE efflux family protein YP_961530.1 150192 R 351745 CDS YP_961531.1 120596957 4660870 151585..152631 1 NC_008750.1 PFAM: polysaccharide deacetylase; KEGG: she:Shewmr4_3801 polysaccharide deacetylase; polysaccharide deacetylase 152631 4660870 Sputw3181_0124 Shewanella sp. W3-18-1 polysaccharide deacetylase YP_961531.1 151585 D 351745 CDS YP_961532.1 120596958 4660883 complement(152632..153264) 1 NC_008750.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: shm:Shewmr7_3873 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 153264 4660883 Sputw3181_0125 Shewanella sp. W3-18-1 electron transport protein SCO1/SenC YP_961532.1 152632 R 351745 CDS YP_961533.1 120596959 4660889 complement(153269..154174) 1 NC_008750.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 154174 4660889 Sputw3181_0126 Shewanella sp. W3-18-1 protoheme IX farnesyltransferase YP_961533.1 153269 R 351745 CDS YP_961534.1 120596960 4660932 complement(154189..155166) 1 NC_008750.1 PFAM: cytochrome oxidase assembly; KEGG: son:SO4613 cytochrome oxidase assembly protein, putative; cytochrome oxidase assembly 155166 4660932 Sputw3181_0127 Shewanella sp. W3-18-1 cytochrome oxidase assembly YP_961534.1 154189 R 351745 CDS YP_961535.1 120596961 4660897 complement(155166..155726) 1 NC_008750.1 KEGG: son:SO4612 hypothetical protein; hypothetical protein 155726 4660897 Sputw3181_0128 Shewanella sp. W3-18-1 hypothetical protein YP_961535.1 155166 R 351745 CDS YP_961536.1 120596962 4660979 complement(155789..156598) 1 NC_008750.1 KEGG: she:Shewmr4_3796 hypothetical protein; hypothetical protein 156598 4660979 Sputw3181_0129 Shewanella sp. W3-18-1 hypothetical protein YP_961536.1 155789 R 351745 CDS YP_961537.1 120596963 4660913 complement(156769..157644) 1 NC_008750.1 PFAM: cytochrome c oxidase, subunit III; KEGG: shm:Shewmr7_3867 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 157644 4660913 Sputw3181_0130 Shewanella sp. W3-18-1 cytochrome c oxidase subunit III YP_961537.1 156769 R 351745 CDS YP_961538.1 120596964 4660977 complement(157641..158207) 1 NC_008750.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 158207 4660977 Sputw3181_0131 Shewanella sp. W3-18-1 cytochrome C oxidase assembly protein YP_961538.1 157641 R 351745 CDS YP_961539.1 120596965 4661030 complement(158209..159801) 1 NC_008750.1 PFAM: cytochrome c oxidase, subunit I; KEGG: shm:Shewmr7_3865 cytochrome-c oxidase; cytochrome-c oxidase 159801 4661030 Sputw3181_0132 Shewanella sp. W3-18-1 cytochrome-c oxidase YP_961539.1 158209 R 351745 CDS YP_961540.1 120596966 4660978 complement(159811..161349) 1 NC_008750.1 PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: she:Shewmr4_3791 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 161349 4660978 Sputw3181_0133 Shewanella sp. W3-18-1 cytochrome c oxidase subunit II YP_961540.1 159811 R 351745 CDS YP_961541.1 120596967 4660955 complement(161745..162257) 1 NC_008750.1 KEGG: she:Shewmr4_3790 hypothetical protein; hypothetical protein 162257 4660955 Sputw3181_0134 Shewanella sp. W3-18-1 hypothetical protein YP_961541.1 161745 R 351745 CDS YP_961542.1 120596968 4661180 complement(162254..162874) 1 NC_008750.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 162874 4661180 Sputw3181_0135 Shewanella sp. W3-18-1 LexA repressor YP_961542.1 162254 R 351745 CDS YP_961543.1 120596969 4661804 163225..165648 1 NC_008750.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 165648 4661804 Sputw3181_0136 Shewanella sp. W3-18-1 glycerol-3-phosphate acyltransferase YP_961543.1 163225 D 351745 CDS YP_961544.1 120596970 4661755 165648..166904 1 NC_008750.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: son:SO4601 tryptophan-specific transport protein; aromatic amino acid transporter 166904 4661755 Sputw3181_0137 Shewanella sp. W3-18-1 aromatic amino acid transporter YP_961544.1 165648 D 351745 CDS YP_961545.1 120596971 4661420 complement(166995..168152) 1 NC_008750.1 PFAM: ribonuclease T2; KEGG: son:SO4599 ribonuclease, T2 family; ribonuclease T2 168152 4661420 Sputw3181_0138 Shewanella sp. W3-18-1 ribonuclease T2 YP_961545.1 166995 R 351745 CDS YP_961546.1 120596972 4661361 168410..169435 1 NC_008750.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 169435 murB 4661361 murB Shewanella sp. W3-18-1 UDP-N-acetylenolpyruvoylglucosamine reductase YP_961546.1 168410 D 351745 CDS YP_961547.1 120596973 4661344 169428..170387 1 NC_008750.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 170387 4661344 Sputw3181_0140 Shewanella sp. W3-18-1 biotin--protein ligase YP_961547.1 169428 D 351745 CDS YP_961548.1 120596974 4661285 complement(170398..171348) 1 NC_008750.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 171348 4661285 Sputw3181_0141 Shewanella sp. W3-18-1 pantothenate kinase YP_961548.1 170398 R 351745 CDS YP_961549.1 120596975 4660614 172061..173245 1 NC_008750.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 173245 4660614 Sputw3181_0142 Shewanella sp. W3-18-1 elongation factor Tu YP_961549.1 172061 D 351745 CDS YP_961550.1 120596976 4660686 173521..173892 1 NC_008750.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 173892 secE 4660686 secE Shewanella sp. W3-18-1 preprotein translocase subunit SecE YP_961550.1 173521 D 351745 CDS YP_961551.1 120596977 4660382 173902..174453 1 NC_008750.1 KEGG: shm:Shewmr7_0182 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; NusG antitermination factor 174453 4660382 Sputw3181_0144 Shewanella sp. W3-18-1 NusG antitermination factor YP_961551.1 173902 D 351745 CDS YP_961552.1 120596978 4660607 174581..175009 1 NC_008750.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 175009 rplK 4660607 rplK Shewanella sp. W3-18-1 50S ribosomal protein L11 YP_961552.1 174581 D 351745 CDS YP_961553.1 120596979 4660604 175014..175715 1 NC_008750.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 175715 rplA 4660604 rplA Shewanella sp. W3-18-1 50S ribosomal protein L1 YP_961553.1 175014 D 351745 CDS YP_961554.1 120596980 4660367 175982..176482 1 NC_008750.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 176482 rplJ 4660367 rplJ Shewanella sp. W3-18-1 50S ribosomal protein L10 YP_961554.1 175982 D 351745 CDS YP_961555.1 120596981 4660363 176537..176905 1 NC_008750.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 176905 rplL 4660363 rplL Shewanella sp. W3-18-1 50S ribosomal protein L7/L12 YP_961555.1 176537 D 351745 CDS YP_961556.1 120596982 4660361 177146..181177 1 NC_008750.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 181177 rpoB 4660361 rpoB Shewanella sp. W3-18-1 DNA-directed RNA polymerase subunit beta YP_961556.1 177146 D 351745 CDS YP_961557.1 120596983 4660327 181261..185478 1 NC_008750.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 185478 4660327 Sputw3181_0150 Shewanella sp. W3-18-1 DNA-directed RNA polymerase subunit beta' YP_961557.1 181261 D 351745 CDS YP_961558.1 120596984 4660330 185658..186032 1 NC_008750.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 186032 rpsL 4660330 rpsL Shewanella sp. W3-18-1 30S ribosomal protein S12 YP_961558.1 185658 D 351745 CDS YP_961559.1 120596985 4660494 186113..186583 1 NC_008750.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 186583 4660494 Sputw3181_0152 Shewanella sp. W3-18-1 30S ribosomal protein S7 YP_961559.1 186113 D 351745 CDS YP_961560.1 120596986 4660439 186662..188758 1 NC_008750.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 188758 4660439 Sputw3181_0153 Shewanella sp. W3-18-1 elongation factor G YP_961560.1 186662 D 351745 CDS YP_961561.2 161936276 4660956 188831..190015 1 NC_008750.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 190015 4660956 Sputw3181_0154 Shewanella sp. W3-18-1 elongation factor Tu YP_961561.2 188831 D 351745 CDS YP_961562.1 120596988 4660046 190350..190661 1 NC_008750.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 190661 rpsJ 4660046 rpsJ Shewanella sp. W3-18-1 30S ribosomal protein S10 YP_961562.1 190350 D 351745 CDS YP_961563.1 120596989 4660018 190689..191327 1 NC_008750.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 191327 rplC 4660018 rplC Shewanella sp. W3-18-1 50S ribosomal protein L3 YP_961563.1 190689 D 351745 CDS YP_961564.1 120596990 4659991 191345..191950 1 NC_008750.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 191950 rplD 4659991 rplD Shewanella sp. W3-18-1 50S ribosomal protein L4 YP_961564.1 191345 D 351745 CDS YP_961565.1 120596991 4659805 191947..192252 1 NC_008750.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 192252 rplW 4659805 rplW Shewanella sp. W3-18-1 50S ribosomal protein L23 YP_961565.1 191947 D 351745 CDS YP_961566.1 120596992 4659941 192269..193093 1 NC_008750.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 193093 rplB 4659941 rplB Shewanella sp. W3-18-1 50S ribosomal protein L2 YP_961566.1 192269 D 351745 CDS YP_961567.1 120596993 4659790 193108..193386 1 NC_008750.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 193386 rpsS 4659790 rpsS Shewanella sp. W3-18-1 30S ribosomal protein S19 YP_961567.1 193108 D 351745 CDS YP_961568.1 120596994 4661745 193402..193734 1 NC_008750.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 193734 rplV 4661745 rplV Shewanella sp. W3-18-1 50S ribosomal protein L22 YP_961568.1 193402 D 351745 CDS YP_961569.1 120596995 4659715 193744..194436 1 NC_008750.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 194436 rpsC 4659715 rpsC Shewanella sp. W3-18-1 30S ribosomal protein S3 YP_961569.1 193744 D 351745 CDS YP_961570.1 120596996 4659689 194448..194858 1 NC_008750.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 194858 rplP 4659689 rplP Shewanella sp. W3-18-1 50S ribosomal protein L16 YP_961570.1 194448 D 351745 CDS YP_961571.1 120596997 4659763 194858..195049 1 NC_008750.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 195049 4659763 Sputw3181_0164 Shewanella sp. W3-18-1 50S ribosomal protein L29 YP_961571.1 194858 D 351745 CDS YP_961572.1 120596998 4659439 195049..195297 1 NC_008750.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 195297 rpsQ 4659439 rpsQ Shewanella sp. W3-18-1 30S ribosomal protein S17 YP_961572.1 195049 D 351745 CDS YP_961573.1 120596999 4659436 195476..195844 1 NC_008750.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 195844 rplN 4659436 rplN Shewanella sp. W3-18-1 50S ribosomal protein L14 YP_961573.1 195476 D 351745 CDS YP_961574.1 120597000 4659405 195856..196170 1 NC_008750.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 196170 rplX 4659405 rplX Shewanella sp. W3-18-1 50S ribosomal protein L24 YP_961574.1 195856 D 351745 CDS YP_961575.1 120597001 4659125 196183..196722 1 NC_008750.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 196722 rplE 4659125 rplE Shewanella sp. W3-18-1 50S ribosomal protein L5 YP_961575.1 196183 D 351745 CDS YP_961576.1 120597002 4659120 196733..197038 1 NC_008750.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 197038 rpsN 4659120 rpsN Shewanella sp. W3-18-1 30S ribosomal protein S14 YP_961576.1 196733 D 351745 CDS YP_961577.1 120597003 4659331 197063..197455 1 NC_008750.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 197455 rpsH 4659331 rpsH Shewanella sp. W3-18-1 30S ribosomal protein S8 YP_961577.1 197063 D 351745 CDS YP_961578.1 120597004 4659111 197466..197999 1 NC_008750.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 197999 rplF 4659111 rplF Shewanella sp. W3-18-1 50S ribosomal protein L6 YP_961578.1 197466 D 351745 CDS YP_961579.1 120597005 4659110 198010..198360 1 NC_008750.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 198360 rplR 4659110 rplR Shewanella sp. W3-18-1 50S ribosomal protein L18 YP_961579.1 198010 D 351745 CDS YP_961580.1 120597006 4659107 198373..198876 1 NC_008750.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 198876 rpsE 4659107 rpsE Shewanella sp. W3-18-1 30S ribosomal protein S5 YP_961580.1 198373 D 351745 CDS YP_961581.1 120597007 4659254 198883..199065 1 NC_008750.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 199065 rpmD 4659254 rpmD Shewanella sp. W3-18-1 50S ribosomal protein L30 YP_961581.1 198883 D 351745 CDS YP_961582.1 120597008 4659227 199069..199503 1 NC_008750.1 late assembly protein; 50S ribosomal protein L15 199503 rplO 4659227 rplO Shewanella sp. W3-18-1 50S ribosomal protein L15 YP_961582.1 199069 D 351745 CDS YP_961583.1 120597009 4659062 199511..200851 1 NC_008750.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 200851 secY 4659062 secY Shewanella sp. W3-18-1 preprotein translocase subunit SecY YP_961583.1 199511 D 351745 CDS YP_961584.1 120597010 4661427 200873..200986 1 NC_008750.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 200986 rpmJ 4661427 rpmJ Shewanella sp. W3-18-1 50S ribosomal protein L36 YP_961584.1 200873 D 351745 CDS YP_961585.1 120597011 4661433 201103..201459 1 NC_008750.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 201459 rpsM 4661433 rpsM Shewanella sp. W3-18-1 30S ribosomal protein S13 YP_961585.1 201103 D 351745 CDS YP_961586.1 120597012 4658858 201475..201867 1 NC_008750.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 201867 4658858 Sputw3181_0179 Shewanella sp. W3-18-1 30S ribosomal protein S11 YP_961586.1 201475 D 351745 CDS YP_961587.1 120597013 4658608 201900..202520 1 NC_008750.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 202520 rpsD 4658608 rpsD Shewanella sp. W3-18-1 30S ribosomal protein S4 YP_961587.1 201900 D 351745 CDS YP_961588.1 120597014 4658798 202545..203534 1 NC_008750.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 203534 4658798 Sputw3181_0181 Shewanella sp. W3-18-1 DNA-directed RNA polymerase subunit alpha YP_961588.1 202545 D 351745 CDS YP_961589.1 120597015 4658785 203575..203970 1 NC_008750.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 203970 rplQ 4658785 rplQ Shewanella sp. W3-18-1 50S ribosomal protein L17 YP_961589.1 203575 D 351745 CDS YP_961590.1 120597016 4660566 complement(204640..205128) 1 NC_008750.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 205128 4660566 Sputw3181_0184 Shewanella sp. W3-18-1 cytochrome c-type biogenesis protein CcmE YP_961590.1 204640 R 351745 CDS YP_961591.1 120597017 4658536 complement(205125..205325) 1 NC_008750.1 PFAM: Heme exporter protein D (CcmD); KEGG: shm:Shewmr7_0223 heme exporter protein D (CcmD); Heme exporter protein CcmD 205325 4658536 Sputw3181_0185 Shewanella sp. W3-18-1 Heme exporter protein CcmD YP_961591.1 205125 R 351745 CDS YP_961592.1 120597018 4658700 complement(205325..206071) 1 NC_008750.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: son:SO0261 heme exporter protein CcmC; heme exporter protein CcmC 206071 4658700 Sputw3181_0186 Shewanella sp. W3-18-1 heme exporter protein CcmC YP_961592.1 205325 R 351745 CDS YP_961593.1 120597019 4658489 complement(206073..206759) 1 NC_008750.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: son:SO0262 heme exporter protein CcmB; heme exporter protein CcmB 206759 4658489 Sputw3181_0187 Shewanella sp. W3-18-1 heme exporter protein CcmB YP_961593.1 206073 R 351745 CDS YP_961594.1 120597020 4658653 complement(206771..207421) 1 NC_008750.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 207421 4658653 Sputw3181_0188 Shewanella sp. W3-18-1 cytochrome c biogenesis protein CcmA YP_961594.1 206771 R 351745 CDS YP_961595.1 120597021 4658645 207742..208041 1 NC_008750.1 PFAM: cytochrome c, class I; KEGG: shm:Shewmr7_0227 cytochrome c, class I; cytochrome c, class I 208041 4658645 Sputw3181_0189 Shewanella sp. W3-18-1 cytochrome c, class I YP_961595.1 207742 D 351745 CDS YP_961596.1 120597022 4658529 complement(208103..209350) 1 NC_008750.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0265 cytochrome c-type biogenesis protein CcmH; hypothetical protein 209350 4658529 Sputw3181_0190 Shewanella sp. W3-18-1 hypothetical protein YP_961596.1 208103 R 351745 CDS YP_961597.1 120597023 4658138 209747..211726 1 NC_008750.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: shm:Shewmr7_0229 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 211726 4658138 Sputw3181_0191 Shewanella sp. W3-18-1 cytochrome c-type biogenesis protein CcmF YP_961597.1 209747 D 351745 CDS YP_961598.1 120597024 4658136 211738..212292 1 NC_008750.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: son:SO0267 thiol:disulfide interchange protein DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE 212292 4658136 Sputw3181_0192 Shewanella sp. W3-18-1 periplasmic protein thiol--disulfide oxidoreductase DsbE YP_961598.1 211738 D 351745 CDS YP_961599.1 120597025 4657719 212289..212768 1 NC_008750.1 PFAM: cytochrome C biogenesis protein; KEGG: son:SO0268 cytochrome c-type biogenesis protein CcmH; cytochrome C biogenesis protein 212768 4657719 Sputw3181_0193 Shewanella sp. W3-18-1 cytochrome C biogenesis protein YP_961599.1 212289 D 351745 CDS YP_961600.1 120597026 4660973 212765..213352 1 NC_008750.1 PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_0232 redoxin domain protein; redoxin domain-containing protein 213352 4660973 Sputw3181_0194 Shewanella sp. W3-18-1 redoxin domain-containing protein YP_961600.1 212765 D 351745 CDS YP_961601.1 120597027 4660297 219543..220055 1 NC_008750.1 KEGG: shm:Shewmr7_3783 hypothetical protein; hypothetical protein 220055 4660297 Sputw3181_0195 Shewanella sp. W3-18-1 hypothetical protein YP_961601.1 219543 D 351745 CDS YP_961602.1 120597028 4660939 220466..220675 1 NC_008750.1 KEGG: son:SO4490 hypothetical protein; hypothetical protein 220675 4660939 Sputw3181_0196 Shewanella sp. W3-18-1 hypothetical protein YP_961602.1 220466 D 351745 CDS YP_961603.1 120597029 4657675 221141..222544 1 NC_008750.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; KEGG: bsu:BG12951 similar to 2-oxoglutarate/malate translocator; anion transporter 222544 4657675 Sputw3181_0197 Shewanella sp. W3-18-1 anion transporter YP_961603.1 221141 D 351745 CDS YP_961604.1 120597030 4657673 222612..224120 1 NC_008750.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: ppr:PBPRA2409 putative fumarate hydratase, class I; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 224120 4657673 Sputw3181_0198 Shewanella sp. W3-18-1 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha YP_961604.1 222612 D 351745 CDS YP_961605.1 120597031 4657813 complement(224204..224881) 1 NC_008750.1 PFAM: response regulator receiver; Helix-turn-helix, type 11 domain protein; KEGG: vpa:VP1711 response regulator; response regulator receiver 224881 4657813 Sputw3181_0199 Shewanella sp. W3-18-1 response regulator receiver YP_961605.1 224204 R 351745 CDS YP_961606.1 120597032 4658380 complement(224871..226538) 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: bld:BLi01245 hypothetical protein; signal transduction histidine kinase regulating citrate/malate metabolism 226538 4658380 Sputw3181_0200 Shewanella sp. W3-18-1 signal transduction histidine kinase regulating citrate/malate metabolism YP_961606.1 224871 R 351745 CDS YP_961607.1 120597033 4658025 complement(226722..227087) 1 NC_008750.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 227087 4658025 Sputw3181_0201 Shewanella sp. W3-18-1 fumarate reductase subunit D YP_961607.1 226722 R 351745 CDS YP_961608.1 120597034 4658201 complement(227100..227483) 1 NC_008750.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 227483 4658201 Sputw3181_0202 Shewanella sp. W3-18-1 fumarate reductase subunit C YP_961608.1 227100 R 351745 CDS YP_961609.1 120597035 4658337 complement(227485..228225) 1 NC_008750.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 228225 4658337 Sputw3181_0203 Shewanella sp. W3-18-1 fumarate reductase iron-sulfur subunit YP_961609.1 227485 R 351745 CDS YP_961610.1 120597036 4658976 complement(228225..230000) 1 NC_008750.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 230000 4658976 Sputw3181_0204 Shewanella sp. W3-18-1 fumarate reductase flavoprotein subunit YP_961610.1 228225 R 351745 CDS YP_961611.1 120597037 4658511 complement(230316..230792) 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO4489 acetyltransferase, GNAT family; N-acetyltransferase GCN5 230792 4658511 Sputw3181_0205 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_961611.1 230316 R 351745 CDS YP_961612.1 120597038 4658722 complement(230895..232211) 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: son:SO4488 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 232211 4658722 Sputw3181_0206 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_961612.1 230895 R 351745 CDS YP_961613.1 120597039 4658797 complement(232216..232875) 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3781 two component transcriptional regulator, winged helix family; two component transcriptional regulator 232875 4658797 Sputw3181_0207 Shewanella sp. W3-18-1 two component transcriptional regulator YP_961613.1 232216 R 351745 CDS YP_961614.1 120597040 4658592 complement(232875..233141) 1 NC_008750.1 PFAM: Propeptide, PepSY amd peptidase M4; KEGG: shm:Shewmr7_3780 propeptide, PepSY amd peptidase M4; peptidase 233141 4658592 Sputw3181_0208 Shewanella sp. W3-18-1 peptidase YP_961614.1 232875 R 351745 CDS YP_961615.1 120597041 4659651 complement(233134..233697) 1 NC_008750.1 KEGG: son:SO4485 diheme cytochrome c; diheme cytochrome c 233697 4659651 Sputw3181_0209 Shewanella sp. W3-18-1 diheme cytochrome c YP_961615.1 233134 R 351745 CDS YP_961616.1 120597042 4659219 complement(233801..234247) 1 NC_008750.1 KEGG: shm:Shewmr7_3778 cytochrome c-type protein Shp; cytochrome c-type protein Shp 234247 4659219 Sputw3181_0210 Shewanella sp. W3-18-1 cytochrome c-type protein Shp YP_961616.1 233801 R 351745 CDS YP_961617.1 120597043 4659346 complement(234301..234888) 1 NC_008750.1 PFAM: cytochrome B561; KEGG: son:SO4483 cytochrome b, putative; cytochrome B561 234888 4659346 Sputw3181_0211 Shewanella sp. W3-18-1 cytochrome B561 YP_961617.1 234301 R 351745 CDS YP_961618.1 120597044 4659508 235105..235569 1 NC_008750.1 KEGG: she:Shewmr4_0245 hypothetical protein; hypothetical protein 235569 4659508 Sputw3181_0212 Shewanella sp. W3-18-1 hypothetical protein YP_961618.1 235105 D 351745 CDS YP_961619.1 120597045 4659598 235650..236153 1 NC_008750.1 KEGG: son:SO4481 hypothetical protein; hypothetical protein 236153 4659598 Sputw3181_0213 Shewanella sp. W3-18-1 hypothetical protein YP_961619.1 235650 D 351745 CDS YP_961620.1 120597046 4660285 complement(236319..237839) 1 NC_008750.1 PFAM: aldehyde dehydrogenase; KEGG: son:SO4480 aldehyde dehydrogenase; aldehyde dehydrogenase 237839 4660285 Sputw3181_0214 Shewanella sp. W3-18-1 aldehyde dehydrogenase YP_961620.1 236319 R 351745 CDS YP_961621.1 120597047 4659774 238100..240001 1 NC_008750.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3771 GAF modulated sigma54 specific transcriptional regulator, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator 240001 4659774 Sputw3181_0215 Shewanella sp. W3-18-1 Fis family GAF modulated sigma54 specific transcriptional regulator YP_961621.1 238100 D 351745 CDS YP_961622.1 120597048 4660015 complement(240044..241393) 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4478 sensor protein CpxA; integral membrane sensor signal transduction histidine kinase 241393 4660015 Sputw3181_0216 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_961622.1 240044 R 351745 CDS YP_961623.1 120597049 4660186 complement(241408..242094) 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4477 transcriptional regulatory protein CpxR; two component transcriptional regulator 242094 4660186 Sputw3181_0217 Shewanella sp. W3-18-1 two component transcriptional regulator YP_961623.1 241408 R 351745 CDS YP_961624.1 120597050 4660987 242361..242852 1 NC_008750.1 PFAM: protein of unknown function, Spy-related; KEGG: she:Shewmr4_0253 protein of unknown function, Spy-related; hypothetical protein 242852 4660987 Sputw3181_0218 Shewanella sp. W3-18-1 hypothetical protein YP_961624.1 242361 D 351745 CDS YP_961625.1 120597051 4660302 242903..243784 1 NC_008750.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: shm:Shewmr7_3767 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 243784 4660302 Sputw3181_0219 Shewanella sp. W3-18-1 cation diffusion facilitator family transporter YP_961625.1 242903 D 351745 CDS YP_961626.1 120597052 4660318 243803..244264 1 NC_008750.1 KEGG: she:Shewmr4_0255 hypothetical protein; hypothetical protein 244264 4660318 Sputw3181_0220 Shewanella sp. W3-18-1 hypothetical protein YP_961626.1 243803 D 351745 CDS YP_961627.1 120597053 4660673 complement(244351..245763) 1 NC_008750.1 KEGG: shm:Shewmr7_3764 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator, NtrC, Fis family 245763 4660673 Sputw3181_0221 Shewanella sp. W3-18-1 nitrogen metabolism transcriptional regulator, NtrC, Fis family YP_961627.1 244351 R 351745 CDS YP_961628.1 120597054 4660833 complement(245801..246847) 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: shm:Shewmr7_3763 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase, nitrogen specific, NtrB 246847 4660833 Sputw3181_0222 Shewanella sp. W3-18-1 signal transduction histidine kinase, nitrogen specific, NtrB YP_961628.1 245801 R 351745 CDS YP_961629.1 120597055 4661029 complement(246969..247508) 1 NC_008750.1 KEGG: shm:Shewmr7_3762 hypothetical protein; hypothetical protein 247508 4661029 Sputw3181_0223 Shewanella sp. W3-18-1 hypothetical protein YP_961629.1 246969 R 351745 CDS YP_961630.1 120597056 4661032 complement(247694..248056) 1 NC_008750.1 KEGG: sdn:Sden_1385 glutathione S-transferase-like protein; glutathione S-transferase-like protein 248056 4661032 Sputw3181_0224 Shewanella sp. W3-18-1 glutathione S-transferase-like protein YP_961630.1 247694 R 351745 CDS YP_961631.1 120597057 4661068 complement(248217..248582) 1 NC_008750.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: vvu:VV20508 glutathione S-transferase; glutathione S-transferase domain-containing protein 248582 4661068 Sputw3181_0225 Shewanella sp. W3-18-1 glutathione S-transferase domain-containing protein YP_961631.1 248217 R 351745 CDS YP_961632.1 120597058 4661125 complement(248716..249408) 1 NC_008750.1 PFAM: ThiJ/PfpI domain protein; KEGG: psb:Psyr_3319 ThiJ/PfpI; ThiJ/PfpI domain-containing protein 249408 4661125 Sputw3181_0226 Shewanella sp. W3-18-1 ThiJ/PfpI domain-containing protein YP_961632.1 248716 R 351745 CDS YP_961633.1 120597059 4661869 complement(249480..250637) 1 NC_008750.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO4469 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 250637 4661869 Sputw3181_0227 Shewanella sp. W3-18-1 iron-containing alcohol dehydrogenase YP_961633.1 249480 R 351745 CDS YP_961634.1 120597060 4661796 complement(250780..251388) 1 NC_008750.1 PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_3760 transcriptional regulator, TetR family; TetR family transcriptional regulator 251388 4661796 Sputw3181_0228 Shewanella sp. W3-18-1 TetR family transcriptional regulator YP_961634.1 250780 R 351745 CDS YP_961635.1 120597061 4661708 complement(251670..251981) 1 NC_008750.1 PFAM: protein of unknown function DUF1255; KEGG: shm:Shewmr7_3759 protein of unknown function DUF1255; hypothetical protein 251981 4661708 Sputw3181_0229 Shewanella sp. W3-18-1 hypothetical protein YP_961635.1 251670 R 351745 CDS YP_961636.1 120597062 4661651 252340..254295 1 NC_008750.1 PFAM: chemotaxis sensory transducer; KEGG: shm:Shewmr7_3758 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 254295 4661651 Sputw3181_0230 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_961636.1 252340 D 351745 CDS YP_961637.1 120597063 4661516 complement(254428..256530) 1 NC_008750.1 PFAM: protein of unknown function DUF323; Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_3757 protein of unknown function DUF323; hypothetical protein 256530 4661516 Sputw3181_0231 Shewanella sp. W3-18-1 hypothetical protein YP_961637.1 254428 R 351745 CDS YP_961638.1 120597064 4661425 256815..257684 1 NC_008750.1 KEGG: son:SO4463 prolyl 4-hydroxylase, alpha subunit domain protein; prolyl 4-hydroxylase subunit alpha 257684 4661425 Sputw3181_0232 Shewanella sp. W3-18-1 prolyl 4-hydroxylase subunit alpha YP_961638.1 256815 D 351745 CDS YP_961639.1 120597065 4661325 257712..258212 1 NC_008750.1 PFAM: transposase IS3/IS911 family protein; KEGG: sdn:Sden_2169 hypothetical protein; transposase IS3/IS911 family protein 258212 4661325 Sputw3181_0233 Shewanella sp. W3-18-1 transposase IS3/IS911 family protein YP_961639.1 257712 D 351745 CDS YP_961640.1 120597066 4661249 258218..259267 1 NC_008750.1 PFAM: Integrase, catalytic region; KEGG: sdn:Sden_2168 integrase, catalytic region; integrase catalytic subunit 259267 4661249 Sputw3181_0234 Shewanella sp. W3-18-1 integrase catalytic subunit YP_961640.1 258218 D 351745 CDS YP_961641.1 120597067 4660035 259605..260000 1 NC_008750.1 KEGG: she:Shewmr4_0265 hypothetical protein; hypothetical protein 260000 4660035 Sputw3181_0236 Shewanella sp. W3-18-1 hypothetical protein YP_961641.1 259605 D 351745 CDS YP_961642.1 120597068 4660500 260377..261231 1 NC_008750.1 PFAM: PfkB domain protein; KEGG: son:SO4458 carbohydrate kinase, PfkB family; ribokinase-like domain-containing protein 261231 4660500 Sputw3181_0237 Shewanella sp. W3-18-1 ribokinase-like domain-containing protein YP_961642.1 260377 D 351745 CDS YP_961643.1 120597069 4660028 261536..262996 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4457 GGDEF domain protein; diguanylate cyclase 262996 4660028 Sputw3181_0238 Shewanella sp. W3-18-1 diguanylate cyclase YP_961643.1 261536 D 351745 CDS YP_961644.1 120597070 4659795 263125..263820 1 NC_008750.1 PFAM: 3-alpha; MOSC domain containing protein; KEGG: she:Shewmr4_0269 MOSC domain containing protein; MOSC domain-containing protein 263820 4659795 Sputw3181_0239 Shewanella sp. W3-18-1 MOSC domain-containing protein YP_961644.1 263125 D 351745 CDS YP_961645.1 120597071 4659782 263857..264213 1 NC_008750.1 KEGG: shm:Shewmr7_3751 hypothetical protein; hypothetical protein 264213 4659782 Sputw3181_0240 Shewanella sp. W3-18-1 hypothetical protein YP_961645.1 263857 D 351745 CDS YP_961646.1 120597072 4661298 complement(264281..266197) 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3750 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 266197 4661298 Sputw3181_0241 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_961646.1 264281 R 351745 CDS YP_961647.1 120597073 4659071 complement(266543..268192) 1 NC_008750.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: shm:Shewmr7_3749 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 268192 4659071 Sputw3181_0242 Shewanella sp. W3-18-1 electron-transferring-flavoprotein dehydrogenase YP_961647.1 266543 R 351745 CDS YP_961648.1 120597074 4658609 268529..269542 1 NC_008750.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 269542 moaA 4658609 moaA Shewanella sp. W3-18-1 molybdenum cofactor biosynthesis protein A YP_961648.1 268529 D 351745 CDS YP_961649.1 120597075 4658541 269640..270116 1 NC_008750.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 270116 moaC 4658541 moaC Shewanella sp. W3-18-1 molybdenum cofactor biosynthesis protein MoaC YP_961649.1 269640 D 351745 CDS YP_961650.1 120597076 4658556 270140..270391 1 NC_008750.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: son:SO4450 molybdenum cofactor biosynthesis protein D; molybdopterin converting factor subunit 1 270391 4658556 Sputw3181_0245 Shewanella sp. W3-18-1 molybdopterin converting factor subunit 1 YP_961650.1 270140 D 351745 CDS YP_961651.1 120597077 4658546 270393..270854 1 NC_008750.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: she:Shewmr4_0276 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE 270854 4658546 Sputw3181_0246 Shewanella sp. W3-18-1 molybdopterin biosynthesis MoaE YP_961651.1 270393 D 351745 CDS YP_961652.1 120597078 4661847 270911..271723 1 NC_008750.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: she:Shewmr4_0277 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 271723 4661847 Sputw3181_0247 Shewanella sp. W3-18-1 molybdenum ABC transporter periplasmic molybdate-binding protein YP_961652.1 270911 D 351745 CDS YP_961653.1 120597079 4661042 271720..272403 1 NC_008750.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_3743 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit 272403 4661042 Sputw3181_0248 Shewanella sp. W3-18-1 molybdate ABC transporter inner membrane subunit YP_961653.1 271720 D 351745 CDS YP_961654.1 120597080 4661515 272384..273487 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3742 ABC transporter related; ABC transporter-like protein 273487 4661515 Sputw3181_0249 Shewanella sp. W3-18-1 ABC transporter-like protein YP_961654.1 272384 D 351745 CDS YP_961655.1 120597081 4657669 273704..274225 1 NC_008750.1 KEGG: shm:Shewmr7_3741 hypothetical protein; hypothetical protein 274225 4657669 Sputw3181_0250 Shewanella sp. W3-18-1 hypothetical protein YP_961655.1 273704 D 351745 CDS YP_961656.1 120597082 4661538 274267..274944 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4428 DNA-binding response regulator; two component transcriptional regulator 274944 4661538 Sputw3181_0251 Shewanella sp. W3-18-1 two component transcriptional regulator YP_961656.1 274267 D 351745 CDS YP_961657.1 120597083 4661343 274994..276250 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4427 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 276250 4661343 Sputw3181_0252 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_961657.1 274994 D 351745 CDS YP_961658.1 120597084 4658428 276284..276973 1 NC_008750.1 TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: she:Shewmr4_0283 pseudouridine synthase Rlu family protein, TIGR01621; pseudouridine synthase Rlu family protein 276973 4658428 Sputw3181_0253 Shewanella sp. W3-18-1 pseudouridine synthase Rlu family protein YP_961658.1 276284 D 351745 CDS YP_961659.1 120597085 4657795 277094..277261 1 NC_008750.1 PFAM: protein of unknown function UPF0057; KEGG: shm:Shewmr7_3736 protein of unknown function UPF0057; hypothetical protein 277261 4657795 Sputw3181_0254 Shewanella sp. W3-18-1 hypothetical protein YP_961659.1 277094 D 351745 CDS YP_961660.1 120597086 4657822 complement(277335..279506) 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_0286 TonB-dependent receptor; TonB-dependent receptor 279506 4657822 Sputw3181_0255 Shewanella sp. W3-18-1 TonB-dependent receptor YP_961660.1 277335 R 351745 CDS YP_961661.1 120597087 4657831 279826..279990 1 NC_008750.1 KEGG: son:SO4421 hypothetical protein; hypothetical protein 279990 4657831 Sputw3181_0256 Shewanella sp. W3-18-1 hypothetical protein YP_961661.1 279826 D 351745 CDS YP_961662.1 120597088 4657841 complement(280007..280519) 1 NC_008750.1 PFAM: peptidase M23B; KEGG: shm:Shewmr7_3731 peptidase M23B; peptidase M23B 280519 4657841 Sputw3181_0257 Shewanella sp. W3-18-1 peptidase M23B YP_961662.1 280007 R 351745 CDS YP_961663.1 120597089 4657846 complement(280559..281137) 1 NC_008750.1 KEGG: son:SO4419 hypothetical protein; hypothetical protein 281137 4657846 Sputw3181_0258 Shewanella sp. W3-18-1 hypothetical protein YP_961663.1 280559 R 351745 CDS YP_961664.1 120597090 4657849 complement(281143..281790) 1 NC_008750.1 PFAM: CHAP domain containing protein; KEGG: son:SO4418 trypanothione synthetase domain protein; CHAP domain-containing protein 281790 4657849 Sputw3181_0259 Shewanella sp. W3-18-1 CHAP domain-containing protein YP_961664.1 281143 R 351745 CDS YP_961665.1 120597091 4657850 282099..283277 1 NC_008750.1 KEGG: she:Shewmr4_0294 hypothetical protein; hypothetical protein 283277 4657850 Sputw3181_0260 Shewanella sp. W3-18-1 hypothetical protein YP_961665.1 282099 D 351745 CDS YP_961666.1 120597092 4657853 283282..284403 1 NC_008750.1 PFAM: aminotransferase, class V; KEGG: shm:Shewmr7_3724 aminotransferase, class V; class V aminotransferase 284403 4657853 Sputw3181_0261 Shewanella sp. W3-18-1 class V aminotransferase YP_961666.1 283282 D 351745 CDS YP_961667.1 120597093 4657870 complement(284492..284815) 1 NC_008750.1 KEGG: son:SO4412 hypothetical protein; hypothetical protein 284815 4657870 Sputw3181_0262 Shewanella sp. W3-18-1 hypothetical protein YP_961667.1 284492 R 351745 CDS YP_961668.1 120597094 4657871 285573..286445 1 NC_008750.1 KEGG: vch:VCA0021 hypothetical protein; hypothetical protein 286445 4657871 Sputw3181_0263 Shewanella sp. W3-18-1 hypothetical protein YP_961668.1 285573 D 351745 CDS YP_961669.1 120597095 4657876 286628..287500 1 NC_008750.1 KEGG: vch:VCA0021 hypothetical protein; hypothetical protein 287500 4657876 Sputw3181_0264 Shewanella sp. W3-18-1 hypothetical protein YP_961669.1 286628 D 351745 CDS YP_961670.1 120597096 4657881 287683..288555 1 NC_008750.1 KEGG: vfi:VF1233 hypothetical protein; hypothetical protein 288555 4657881 Sputw3181_0265 Shewanella sp. W3-18-1 hypothetical protein YP_961670.1 287683 D 351745 CDS YP_961671.1 120597097 4657883 complement(288882..290291) 1 NC_008750.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 290291 glnA 4657883 glnA Shewanella sp. W3-18-1 glutamine synthetase YP_961671.1 288882 R 351745 CDS YP_961672.1 120597098 4657889 291326..293137 1 NC_008750.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: son:SO4408 virulence regulator BipA; GTP-binding protein TypA 293137 4657889 Sputw3181_0267 Shewanella sp. W3-18-1 GTP-binding protein TypA YP_961672.1 291326 D 351745 CDS YP_961673.1 120597099 4657899 complement(293209..294249) 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4407 GGDEF family protein; diguanylate cyclase 294249 4657899 Sputw3181_0268 Shewanella sp. W3-18-1 diguanylate cyclase YP_961673.1 293209 R 351745 CDS YP_961674.1 120597100 4657903 294658..296844 1 NC_008750.1 KEGG: she:Shewmr4_0311 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 296844 4657903 Sputw3181_0269 Shewanella sp. W3-18-1 catalase/peroxidase HPI YP_961674.1 294658 D 351745 CDS YP_961675.1 120597101 4657929 complement(296915..298129) 1 NC_008750.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_3712 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 298129 4657929 Sputw3181_0270 Shewanella sp. W3-18-1 4Fe-4S ferredoxin YP_961675.1 296915 R 351745 CDS YP_961676.1 120597102 4657934 complement(298624..298845) 1 NC_008750.1 KEGG: shm:Shewmr7_3709 hypothetical protein; hypothetical protein 298845 4657934 Sputw3181_0271 Shewanella sp. W3-18-1 hypothetical protein YP_961676.1 298624 R 351745 CDS YP_961677.1 120597103 4657943 298927..299811 1 NC_008750.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 299811 rbn 4657943 rbn Shewanella sp. W3-18-1 ribonuclease BN YP_961677.1 298927 D 351745 CDS YP_961678.1 120597104 4657944 299883..300320 1 NC_008750.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 300320 4657944 Sputw3181_0273 Shewanella sp. W3-18-1 D-tyrosyl-tRNA(Tyr) deacylase YP_961678.1 299883 D 351745 CDS YP_961679.1 120597105 4657956 300410..300859 1 NC_008750.1 TIGRFAM: thioesterase domain, putative; KEGG: son:SO4397 hypothetical acetyltransferase; thioesterase domain-containing protein 300859 4657956 Sputw3181_0274 Shewanella sp. W3-18-1 thioesterase domain-containing protein YP_961679.1 300410 D 351745 CDS YP_961680.1 120597106 4657958 301016..302236 1 NC_008750.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: mag:amb2240 TPR repeat; peptidase S1 and S6, chymotrypsin/Hap 302236 4657958 Sputw3181_0275 Shewanella sp. W3-18-1 peptidase S1 and S6, chymotrypsin/Hap YP_961680.1 301016 D 351745 CDS YP_961681.1 120597107 4657969 302248..302781 1 NC_008750.1 hypothetical protein 302781 4657969 Sputw3181_0276 Shewanella sp. W3-18-1 hypothetical protein YP_961681.1 302248 D 351745 CDS YP_961682.1 120597108 4657971 302970..303566 1 NC_008750.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 303566 4657971 Sputw3181_0277 Shewanella sp. W3-18-1 azoreductase YP_961682.1 302970 D 351745 CDS YP_961683.1 120597109 4657974 complement(303702..304268) 1 NC_008750.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: shm:Shewmr7_3700 transcriptional regulator, XRE family; XRE family transcriptional regulator 304268 4657974 Sputw3181_0278 Shewanella sp. W3-18-1 XRE family transcriptional regulator YP_961683.1 303702 R 351745 CDS YP_961684.1 120597110 4657988 304432..305619 1 NC_008750.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: shm:Shewmr7_3699 benzoate transporter; benzoate transporter 305619 4657988 Sputw3181_0279 Shewanella sp. W3-18-1 benzoate transporter YP_961684.1 304432 D 351745 CDS YP_961685.1 120597111 4658005 complement(305671..306147) 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_3696 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 306147 4658005 Sputw3181_0280 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_961685.1 305671 R 351745 CDS YP_961686.1 120597112 4658012 complement(306599..307762) 1 NC_008750.1 SMART: HNH nuclease; KEGG: dar:Daro_1328 hypothetical protein; HNH nuclease 307762 4658012 Sputw3181_0281 Shewanella sp. W3-18-1 HNH nuclease YP_961686.1 306599 R 351745 CDS YP_961687.1 120597113 4658019 complement(308340..308639) 1 NC_008750.1 PFAM: plasmid stabilization system; KEGG: shm:Shewmr7_3694 plasmid stabilization system; plasmid stabilization system protein 308639 4658019 Sputw3181_0282 Shewanella sp. W3-18-1 plasmid stabilization system protein YP_961687.1 308340 R 351745 CDS YP_961688.1 120597114 4658021 complement(308648..308890) 1 NC_008750.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: shm:Shewmr7_3693 prevent-host-death family protein; prevent-host-death family protein 308890 4658021 Sputw3181_0283 Shewanella sp. W3-18-1 prevent-host-death family protein YP_961688.1 308648 R 351745 CDS YP_961689.1 120597115 4658030 complement(309169..309912) 1 NC_008750.1 KEGG: she:Shewmr4_0334 hypothetical protein; hypothetical protein 309912 4658030 Sputw3181_0284 Shewanella sp. W3-18-1 hypothetical protein YP_961689.1 309169 R 351745 CDS YP_961690.1 120597116 4658035 complement(309944..311203) 1 NC_008750.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 311203 4658035 Sputw3181_0285 Shewanella sp. W3-18-1 3-oxoacyl-(acyl carrier protein) synthase II YP_961690.1 309944 R 351745 CDS YP_961691.1 120597117 4658038 complement(311204..311929) 1 NC_008750.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 311929 fabG 4658038 fabG Shewanella sp. W3-18-1 3-ketoacyl-ACP reductase YP_961691.1 311204 R 351745 CDS YP_961692.1 120597118 4658047 complement(312042..312575) 1 NC_008750.1 KEGG: son:SO4381 thioester dehydrase family protein; thioester dehydrase family protein 312575 4658047 Sputw3181_0287 Shewanella sp. W3-18-1 thioester dehydrase family protein YP_961692.1 312042 R 351745 CDS YP_961693.1 120597119 4658055 complement(312580..313797) 1 NC_008750.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 313797 4658055 Sputw3181_0288 Shewanella sp. W3-18-1 3-oxoacyl-ACP synthase YP_961693.1 312580 R 351745 CDS YP_961694.1 120597120 4658057 complement(313826..314590) 1 NC_008750.1 KEGG: she:Shewmr4_0339 hypothetical protein; hypothetical protein 314590 4658057 Sputw3181_0289 Shewanella sp. W3-18-1 hypothetical protein YP_961694.1 313826 R 351745 CDS YP_961695.1 120597121 4658066 complement(314595..315884) 1 NC_008750.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: shm:Shewmr7_3686 monooxygenase, FAD-binding protein; FAD-binding monooxygenase 315884 4658066 Sputw3181_0290 Shewanella sp. W3-18-1 FAD-binding monooxygenase YP_961695.1 314595 R 351745 CDS YP_961696.1 120597122 4658075 complement(315908..318349) 1 NC_008750.1 KEGG: she:Shewmr4_0341 hypothetical protein; hypothetical protein 318349 4658075 Sputw3181_0291 Shewanella sp. W3-18-1 hypothetical protein YP_961696.1 315908 R 351745 CDS YP_961697.1 120597123 4658084 complement(318352..319140) 1 NC_008750.1 KEGG: she:Shewmr4_0342 hypothetical protein; hypothetical protein 319140 4658084 Sputw3181_0292 Shewanella sp. W3-18-1 hypothetical protein YP_961697.1 318352 R 351745 CDS YP_961698.1 120597124 4658093 complement(319140..319571) 1 NC_008750.1 PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_3683 thioesterase superfamily protein; thioesterase superfamily protein 319571 4658093 Sputw3181_0293 Shewanella sp. W3-18-1 thioesterase superfamily protein YP_961698.1 319140 R 351745 CDS YP_961699.1 120597125 4658103 complement(319568..321142) 1 NC_008750.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: she:Shewmr4_0344 histidine ammonia-lyase; histidine ammonia-lyase 321142 4658103 Sputw3181_0294 Shewanella sp. W3-18-1 histidine ammonia-lyase YP_961699.1 319568 R 351745 CDS YP_961700.1 120597126 4658111 complement(321139..322998) 1 NC_008750.1 PFAM: glycosyl transferase, family 2; lipid A biosynthesis acyltransferase; KEGG: she:Shewmr4_0345 glycosyl transferase, family 2; glycosyl transferase family protein 322998 4658111 Sputw3181_0295 Shewanella sp. W3-18-1 glycosyl transferase family protein YP_961700.1 321139 R 351745 CDS YP_961701.1 120597127 4658120 complement(322992..323399) 1 NC_008750.1 KEGG: son:SO4372 thioester dehydrase family protein; thioester dehydrase family protein 323399 4658120 Sputw3181_0296 Shewanella sp. W3-18-1 thioester dehydrase family protein YP_961701.1 322992 R 351745 CDS YP_961702.1 120597128 4658129 complement(323392..324756) 1 NC_008750.1 KEGG: shm:Shewmr7_3679 hypothetical protein; hypothetical protein 324756 4658129 Sputw3181_0297 Shewanella sp. W3-18-1 hypothetical protein YP_961702.1 323392 R 351745 CDS YP_961703.1 120597129 4658151 complement(324753..325301) 1 NC_008750.1 KEGG: shm:Shewmr7_3678 hypothetical protein; hypothetical protein 325301 4658151 Sputw3181_0298 Shewanella sp. W3-18-1 hypothetical protein YP_961703.1 324753 R 351745 CDS YP_961704.1 120597130 4658155 complement(325301..325549) 1 NC_008750.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 325549 4658155 Sputw3181_0299 Shewanella sp. W3-18-1 acyl carrier protein YP_961704.1 325301 R 351745 CDS YP_961705.1 120597131 4658162 complement(325559..325813) 1 NC_008750.1 KEGG: son:SO4368 acyl carrier protein, putative; acyl carrier protein 325813 4658162 Sputw3181_0300 Shewanella sp. W3-18-1 acyl carrier protein YP_961705.1 325559 R 351745 CDS YP_961706.1 120597132 4658174 complement(325797..326672) 1 NC_008750.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: she:Shewmr4_0351 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 326672 4658174 Sputw3181_0301 Shewanella sp. W3-18-1 phospholipid/glycerol acyltransferase YP_961706.1 325797 R 351745 CDS YP_961707.1 120597133 4658179 complement(326665..327408) 1 NC_008750.1 KEGG: she:Shewmr4_0352 hypothetical protein; hypothetical protein 327408 4658179 Sputw3181_0302 Shewanella sp. W3-18-1 hypothetical protein YP_961707.1 326665 R 351745 CDS YP_961708.1 120597134 4658188 complement(327748..328647) 1 NC_008750.1 KEGG: son:SO4365 hypothetical protein; hypothetical protein 328647 4658188 Sputw3181_0303 Shewanella sp. W3-18-1 hypothetical protein YP_961708.1 327748 R 351745 CDS YP_961709.1 120597135 4658196 complement(328830..330920) 1 NC_008750.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 330920 4658196 Sputw3181_0304 Shewanella sp. W3-18-1 ATP-dependent DNA helicase RecG YP_961709.1 328830 R 351745 CDS YP_961710.1 120597136 4658202 331152..331865 1 NC_008750.1 protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 331865 4658202 Sputw3181_0305 Shewanella sp. W3-18-1 multiple drug resistance protein MarC YP_961710.1 331152 D 351745 CDS YP_961711.1 120597137 4658282 complement(331982..333427) 1 NC_008750.1 PFAM: OmpA/MotB domain protein; KEGG: she:Shewmr4_0916 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 333427 4658282 Sputw3181_0306 Shewanella sp. W3-18-1 OmpA/MotB domain-containing protein YP_961711.1 331982 R 351745 CDS YP_961712.1 120597138 4658421 333580..333933 1 NC_008750.1 hypothetical protein 333933 4658421 Sputw3181_0307 Shewanella sp. W3-18-1 hypothetical protein YP_961712.1 333580 D 351745 CDS YP_961713.1 120597139 4658966 334488..334844 1 NC_008750.1 hypothetical protein 334844 4658966 Sputw3181_0308 Shewanella sp. W3-18-1 hypothetical protein YP_961713.1 334488 D 351745 CDS YP_961714.1 120597140 4658961 335704..337050 1 NC_008750.1 PFAM: HipA domain protein; KEGG: vvy:VV0798 hypothetical protein; HipA domain-containing protein 337050 4658961 Sputw3181_0309 Shewanella sp. W3-18-1 HipA domain-containing protein YP_961714.1 335704 D 351745 CDS YP_961715.1 120597141 4658628 337047..337493 1 NC_008750.1 PFAM: helix-turn-helix domain protein; KEGG: vvu:VV10402 predicted transcriptional regulator; XRE family transcriptional regulator 337493 4658628 Sputw3181_0310 Shewanella sp. W3-18-1 XRE family transcriptional regulator YP_961715.1 337047 D 351745 CDS YP_961716.1 120597142 4658632 complement(337490..337981) 1 NC_008750.1 PFAM: transposase IS3/IS911 family protein; KEGG: bxe:Bxe_A0222 type I site-specific deoxyribonuclease HsdR; transposase IS3/IS911 family protein 337981 4658632 Sputw3181_0311 Shewanella sp. W3-18-1 transposase IS3/IS911 family protein YP_961716.1 337490 R 351745 CDS YP_961717.1 120597143 4658654 complement(338036..338317) 1 NC_008750.1 PFAM: protein of unknown function UPF0150; KEGG: plu:plu2506 hypothetical protein; hypothetical protein 338317 4658654 Sputw3181_0312 Shewanella sp. W3-18-1 hypothetical protein YP_961717.1 338036 R 351745 CDS YP_961718.1 120597144 4658673 complement(338408..338824) 1 NC_008750.1 KEGG: eca:ECA0367 putative DNA-binding protein; putative DNA-binding protein 338824 4658673 Sputw3181_0313 Shewanella sp. W3-18-1 putative DNA-binding protein YP_961718.1 338408 R 351745 CDS YP_961719.1 120597145 4658682 complement(339168..340421) 1 NC_008750.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; protein of unknown function UPF0174; Miro domain protein; KEGG: ilo:IL0536 predicted C-terminal GTPase domain fused to uncharaterized conserved domain; small GTP-binding protein 340421 4658682 Sputw3181_0314 Shewanella sp. W3-18-1 small GTP-binding protein YP_961719.1 339168 R 351745 CDS YP_961720.1 120597146 4658698 complement(340479..340844) 1 NC_008750.1 hypothetical protein 340844 4658698 Sputw3181_0315 Shewanella sp. W3-18-1 hypothetical protein YP_961720.1 340479 R 351745 CDS YP_961721.1 120597147 4658703 340971..342656 1 NC_008750.1 PFAM: sigma-54 factor, interaction domain-containing protein; SMART: AAA ATPase; KEGG: ilo:IL0537 possible regulatory protein containing AAA-type ATPase domain; sigma-54 factor interaction domain-containing protein 342656 4658703 Sputw3181_0316 Shewanella sp. W3-18-1 sigma-54 factor interaction domain-containing protein YP_961721.1 340971 D 351745 CDS YP_961722.1 120597148 4658707 342953..344677 1 NC_008750.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: noc:Noc_2903 type I restriction-modification system M subunit; type I restriction-modification system, M subunit 344677 4658707 Sputw3181_0317 Shewanella sp. W3-18-1 type I restriction-modification system, M subunit YP_961722.1 342953 D 351745 CDS YP_961723.1 120597149 4658723 344670..345923 1 NC_008750.1 PFAM: restriction modification system DNA specificity domain; KEGG: mja:MJ0130m type I restriction-modification enzyme, S subunit; restriction modification system DNA specificity subunit 345923 4658723 Sputw3181_0318 Shewanella sp. W3-18-1 restriction modification system DNA specificity subunit YP_961723.1 344670 D 351745 CDS YP_961724.1 120597150 4658729 345936..346781 1 NC_008750.1 hypothetical protein 346781 4658729 Sputw3181_0319 Shewanella sp. W3-18-1 hypothetical protein YP_961724.1 345936 D 351745 CDS YP_961725.1 120597151 4658356 346769..347446 1 NC_008750.1 hypothetical protein 347446 4658356 Sputw3181_0320 Shewanella sp. W3-18-1 hypothetical protein YP_961725.1 346769 D 351745 CDS YP_961726.1 120597152 4658749 347443..350604 1 NC_008750.1 KEGG: son:SO0380 type I restriction-modification system, R subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; HsdR family type I site-specific deoxyribonuclease 350604 4658749 Sputw3181_0321 Shewanella sp. W3-18-1 HsdR family type I site-specific deoxyribonuclease YP_961726.1 347443 D 351745 CDS YP_961727.1 120597153 4658766 350616..351323 1 NC_008750.1 PFAM: protein of unknown function DUF45; KEGG: son:SO0379 hypothetical protein; hypothetical protein 351323 4658766 Sputw3181_0322 Shewanella sp. W3-18-1 hypothetical protein YP_961727.1 350616 D 351745 CDS YP_961728.1 120597154 4658778 351366..352676 1 NC_008750.1 KEGG: bam:Bamb_0004 GTPase subunit of restriction endonuclease-like protein; hypothetical protein 352676 4658778 Sputw3181_0323 Shewanella sp. W3-18-1 hypothetical protein YP_961728.1 351366 D 351745 CDS YP_961729.1 120597155 4658793 352755..353414 1 NC_008750.1 KEGG: ppr:PBPRC0061 hypothetical protein; hypothetical protein 353414 4658793 Sputw3181_0324 Shewanella sp. W3-18-1 hypothetical protein YP_961729.1 352755 D 351745 CDS YP_961730.1 120597156 4658795 353500..353883 1 NC_008750.1 hypothetical protein 353883 4658795 Sputw3181_0325 Shewanella sp. W3-18-1 hypothetical protein YP_961730.1 353500 D 351745 CDS YP_961731.1 120597157 4658806 complement(354054..354329) 1 NC_008750.1 hypothetical protein 354329 4658806 Sputw3181_0326 Shewanella sp. W3-18-1 hypothetical protein YP_961731.1 354054 R 351745 CDS YP_961732.1 120597158 4658814 complement(354395..355330) 1 NC_008750.1 KEGG: son:SO4260 hypothetical protein; hypothetical protein 355330 4658814 Sputw3181_0327 Shewanella sp. W3-18-1 hypothetical protein YP_961732.1 354395 R 351745 CDS YP_961733.1 120597159 4658819 complement(355753..355968) 1 NC_008750.1 PFAM: Prophage CP4-57 regulatory; KEGG: cps:CPS_2017 hypothetical protein; phage transcriptional regulator AlpA 355968 4658819 Sputw3181_0328 Shewanella sp. W3-18-1 phage transcriptional regulator AlpA YP_961733.1 355753 R 351745 CDS YP_961734.1 120597160 4658821 complement(356078..356911) 1 NC_008750.1 hypothetical protein 356911 4658821 Sputw3181_0329 Shewanella sp. W3-18-1 hypothetical protein YP_961734.1 356078 R 351745 CDS YP_961735.1 120597161 4658823 complement(356921..358189) 1 NC_008750.1 PFAM: phage integrase family protein; KEGG: sdn:Sden_0317 phage integrase; phage integrase family protein 358189 4658823 Sputw3181_0330 Shewanella sp. W3-18-1 phage integrase family protein YP_961735.1 356921 R 351745 CDS YP_961736.1 120597162 4658827 complement(358391..359254) 1 NC_008750.1 PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: shm:Shewmr7_0351 hypothetical protein; hypothetical protein 359254 4658827 Sputw3181_0331 Shewanella sp. W3-18-1 hypothetical protein YP_961736.1 358391 R 351745 CDS YP_961737.1 120597163 4658830 359729..360442 1 NC_008750.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 360442 rph 4658830 rph Shewanella sp. W3-18-1 ribonuclease PH YP_961737.1 359729 D 351745 CDS YP_961738.1 120597164 4658840 360610..361251 1 NC_008750.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 361251 pyrE 4658840 pyrE Shewanella sp. W3-18-1 orotate phosphoribosyltransferase YP_961738.1 360610 D 351745 CDS YP_961739.1 120597165 4658863 complement(361310..361954) 1 NC_008750.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 361954 folE 4658863 folE Shewanella sp. W3-18-1 GTP cyclohydrolase I YP_961739.1 361310 R 351745 CDS YP_961740.1 120597166 4658878 complement(362178..362771) 1 NC_008750.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 362771 slmA 4658878 slmA Shewanella sp. W3-18-1 nucleoid occlusion protein YP_961740.1 362178 R 351745 CDS YP_961741.1 120597167 4658617 complement(362804..363262) 1 NC_008750.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 363262 dut 4658617 dut Shewanella sp. W3-18-1 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_961741.1 362804 R 351745 CDS YP_961742.1 120597168 4658928 complement(363259..364479) 1 NC_008750.1 KEGG: shm:Shewmr7_0358 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 364479 4658928 Sputw3181_0337 Shewanella sp. W3-18-1 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_961742.1 363259 R 351745 CDS YP_961743.1 120597169 4658971 364602..365279 1 NC_008750.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 365279 radC 4658971 radC Shewanella sp. W3-18-1 DNA repair protein RadC YP_961743.1 364602 D 351745 CDS YP_961744.1 120597170 4659019 365401..365637 1 NC_008750.1 required for 70S ribosome assembly; 50S ribosomal protein L28 365637 rpmB 4659019 rpmB Shewanella sp. W3-18-1 50S ribosomal protein L28 YP_961744.1 365401 D 351745 CDS YP_961745.1 120597171 4659671 365644..365817 1 NC_008750.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 365817 rpmG 4659671 rpmG Shewanella sp. W3-18-1 50S ribosomal protein L33 YP_961745.1 365644 D 351745 CDS YP_961746.1 120597172 4659606 365987..367240 1 NC_008750.1 KEGG: pha:PSHAa2360 phage integrase; hypothetical protein 367240 4659606 Sputw3181_0341 Shewanella sp. W3-18-1 hypothetical protein YP_961746.1 365987 D 351745 CDS YP_961747.1 120597173 4659163 367237..368979 1 NC_008750.1 KEGG: vch:VC0184 hypothetical protein; hypothetical protein 368979 4659163 Sputw3181_0342 Shewanella sp. W3-18-1 hypothetical protein YP_961747.1 367237 D 351745 CDS YP_961748.1 120597174 4659175 368983..370887 1 NC_008750.1 PFAM: phage integrase family protein; KEGG: vch:VC0183 hypothetical protein; phage integrase family protein 370887 4659175 Sputw3181_0343 Shewanella sp. W3-18-1 phage integrase family protein YP_961748.1 368983 D 351745 CDS YP_961749.1 120597175 4659178 370887..371285 1 NC_008750.1 hypothetical protein 371285 4659178 Sputw3181_0344 Shewanella sp. W3-18-1 hypothetical protein YP_961749.1 370887 D 351745 CDS YP_961750.1 120597176 4659185 371524..372624 1 NC_008750.1 KEGG: sec:SC146 hypothetical protein; hypothetical protein 372624 4659185 Sputw3181_0345 Shewanella sp. W3-18-1 hypothetical protein YP_961750.1 371524 D 351745 CDS YP_961751.1 120597177 4659010 372626..373585 1 NC_008750.1 KEGG: sec:SC145 hypothetical protein; hypothetical protein 373585 4659010 Sputw3181_0346 Shewanella sp. W3-18-1 hypothetical protein YP_961751.1 372626 D 351745 CDS YP_961752.1 120597178 4659012 complement(374421..374780) 1 NC_008750.1 KEGG: eba:ebB231 hypothetical protein; hypothetical protein 374780 4659012 Sputw3181_0347 Shewanella sp. W3-18-1 hypothetical protein YP_961752.1 374421 R 351745 CDS YP_961753.1 120597179 4659200 374870..375247 1 NC_008750.1 PFAM: transcriptional regulator TrmB; Penicillinase repressor; KEGG: sfr:Sfri_2523 transcriptional repressor, CopY family protein; transcriptional regulator TrmB 375247 4659200 Sputw3181_0348 Shewanella sp. W3-18-1 transcriptional regulator TrmB YP_961753.1 374870 D 351745 CDS YP_961754.1 120597180 4659209 375256..376236 1 NC_008750.1 PFAM: peptidase M56, BlaR1; KEGG: sfr:Sfri_2522 peptidase M56, BlaR1; peptidase M56, BlaR1 376236 4659209 Sputw3181_0349 Shewanella sp. W3-18-1 peptidase M56, BlaR1 YP_961754.1 375256 D 351745 CDS YP_961755.1 120597181 4659217 376250..377533 1 NC_008750.1 KEGG: tcx:Tcr_2097 outer membrane efflux protein; outer membrane efflux protein 377533 4659217 Sputw3181_0350 Shewanella sp. W3-18-1 outer membrane efflux protein YP_961755.1 376250 D 351745 CDS YP_961756.1 120597182 4659225 377542..378786 1 NC_008750.1 KEGG: tcx:Tcr_2096 secretion protein HlyD; secretion protein HlyD 378786 4659225 Sputw3181_0351 Shewanella sp. W3-18-1 secretion protein HlyD YP_961756.1 377542 D 351745 CDS YP_961757.1 120597183 4659230 378798..381941 1 NC_008750.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: tcx:Tcr_2095 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein 381941 4659230 Sputw3181_0352 Shewanella sp. W3-18-1 CzcA family heavy metal efflux protein YP_961757.1 378798 D 351745 CDS YP_961758.1 120597184 4659244 381931..382626 1 NC_008750.1 KEGG: sfr:Sfri_2521 hypothetical protein; hypothetical protein 382626 4659244 Sputw3181_0353 Shewanella sp. W3-18-1 hypothetical protein YP_961758.1 381931 D 351745 CDS YP_961759.1 120597185 4659246 382646..383176 1 NC_008750.1 KEGG: sfr:Sfri_2520 hypothetical protein; hypothetical protein 383176 4659246 Sputw3181_0354 Shewanella sp. W3-18-1 hypothetical protein YP_961759.1 382646 D 351745 CDS YP_961760.1 120597186 4659257 383202..383534 1 NC_008750.1 KEGG: sfr:Sfri_2519 hypothetical protein; hypothetical protein 383534 4659257 Sputw3181_0355 Shewanella sp. W3-18-1 hypothetical protein YP_961760.1 383202 D 351745 CDS YP_961761.1 120597187 4659091 384231..384962 1 NC_008750.1 hypothetical protein 384962 4659091 Sputw3181_0356 Shewanella sp. W3-18-1 hypothetical protein YP_961761.1 384231 D 351745 CDS YP_961762.1 120597188 4659263 385395..385748 1 NC_008750.1 KEGG: shm:Shewmr7_2217 hypothetical protein; hypothetical protein 385748 4659263 Sputw3181_0357 Shewanella sp. W3-18-1 hypothetical protein YP_961762.1 385395 D 351745 CDS YP_961763.1 120597189 4659269 385793..386104 1 NC_008750.1 PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 386104 4659269 Sputw3181_0358 Shewanella sp. W3-18-1 transposase IS3/IS911 family protein YP_961763.1 385793 D 351745 CDS YP_961764.1 120597190 4659280 386143..386652 1 NC_008750.1 KEGG: sdy:SDY_4291 IS911 ORF2; IS911 ORF2 386652 4659280 Sputw3181_0359 Shewanella sp. W3-18-1 IS911 ORF2 YP_961764.1 386143 D 351745 CDS YP_961765.1 120597191 4659292 386616..386975 1 NC_008750.1 KEGG: vch:VCA0791 transposase OrfAB, subunit B; transposase OrfAB subunit B 386975 4659292 Sputw3181_0360 Shewanella sp. W3-18-1 transposase OrfAB subunit B YP_961765.1 386616 D 351745 CDS YP_961766.1 120597192 4659299 387050..387598 1 NC_008750.1 KEGG: shm:Shewmr7_2216 hypothetical protein; hypothetical protein 387598 4659299 Sputw3181_0361 Shewanella sp. W3-18-1 hypothetical protein YP_961766.1 387050 D 351745 CDS YP_961767.1 120597193 4659307 387808..389502 1 NC_008750.1 KEGG: shm:Shewmr7_2215 hypothetical protein; hypothetical protein 389502 4659307 Sputw3181_0362 Shewanella sp. W3-18-1 hypothetical protein YP_961767.1 387808 D 351745 CDS YP_961768.1 120597194 4659310 389699..389893 1 NC_008750.1 KEGG: noc:Noc_0575 hypothetical protein; hypothetical protein 389893 4659310 Sputw3181_0363 Shewanella sp. W3-18-1 hypothetical protein YP_961768.1 389699 D 351745 CDS YP_961769.1 120597195 4659315 complement(389858..391468) 1 NC_008750.1 KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 391468 4659315 Sputw3181_0364 Shewanella sp. W3-18-1 IS4 family transposase YP_961769.1 389858 R 351745 CDS YP_961770.1 120597196 4659334 391702..391905 1 NC_008750.1 KEGG: noc:Noc_0575 hypothetical protein; hypothetical protein 391905 4659334 Sputw3181_0365 Shewanella sp. W3-18-1 hypothetical protein YP_961770.1 391702 D 351745 CDS YP_961771.1 120597197 4659339 392013..392675 1 NC_008750.1 KEGG: nme:NMB1008 hypothetical protein; hypothetical protein 392675 4659339 Sputw3181_0366 Shewanella sp. W3-18-1 hypothetical protein YP_961771.1 392013 D 351745 CDS YP_961772.1 120597198 4659342 complement(392914..393819) 1 NC_008750.1 KEGG: spd:SPD_0493 hypothetical protein; hypothetical protein 393819 4659342 Sputw3181_0367 Shewanella sp. W3-18-1 hypothetical protein YP_961772.1 392914 R 351745 CDS YP_961773.1 120597199 4659351 394826..396145 1 NC_008750.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 396145 4659351 Sputw3181_0368 Shewanella sp. W3-18-1 N-acetylglutamate synthase YP_961773.1 394826 D 351745 CDS YP_961774.1 120597200 4659354 396261..396779 1 NC_008750.1 KEGG: son:SO4244 hypothetical protein; hypothetical protein 396779 4659354 Sputw3181_0369 Shewanella sp. W3-18-1 hypothetical protein YP_961774.1 396261 D 351745 CDS YP_961775.1 120597201 4659358 complement(396826..397710) 1 NC_008750.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4243 rarD protein; transporter DMT superfamily protein 397710 4659358 Sputw3181_0370 Shewanella sp. W3-18-1 transporter DMT superfamily protein YP_961775.1 396826 R 351745 CDS YP_961776.1 120597202 4659364 complement(397903..398367) 1 NC_008750.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: she:Shewmr4_3591 uncharacterized domain 1; hypothetical protein 398367 4659364 Sputw3181_0371 Shewanella sp. W3-18-1 hypothetical protein YP_961776.1 397903 R 351745 CDS YP_961777.1 120597203 4659368 398664..400487 1 NC_008750.1 KEGG: she:Shewmr4_3590 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 400487 4659368 Sputw3181_0372 Shewanella sp. W3-18-1 ATP-dependent DNA helicase RecQ YP_961777.1 398664 D 351745 CDS YP_961778.1 120597204 4659378 complement(400469..402247) 1 NC_008750.1 SMART: Tetratricopeptide domain protein; KEGG: she:Shewmr4_3589 response regulator receiver protein; hypothetical protein 402247 4659378 Sputw3181_0373 Shewanella sp. W3-18-1 hypothetical protein YP_961778.1 400469 R 351745 CDS YP_961779.1 120597205 4659384 402754..404322 1 NC_008750.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 404322 4659384 Sputw3181_0374 Shewanella sp. W3-18-1 2-isopropylmalate synthase YP_961779.1 402754 D 351745 CDS YP_961780.1 120597206 4659396 404393..405487 1 NC_008750.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 405487 4659396 Sputw3181_0375 Shewanella sp. W3-18-1 3-isopropylmalate dehydrogenase YP_961780.1 404393 D 351745 CDS YP_961781.1 120597207 4659414 405487..406911 1 NC_008750.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 406911 4659414 Sputw3181_0376 Shewanella sp. W3-18-1 isopropylmalate isomerase large subunit YP_961781.1 405487 D 351745 CDS YP_961782.1 120597208 4659417 406939..407544 1 NC_008750.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 407544 leuD 4659417 leuD Shewanella sp. W3-18-1 isopropylmalate isomerase small subunit YP_961782.1 406939 D 351745 CDS YP_961783.1 120597209 4659421 408064..409419 1 NC_008750.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: shm:Shewmr7_0372 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 409419 4659421 Sputw3181_0378 Shewanella sp. W3-18-1 aromatic hydrocarbon degradation membrane protein YP_961783.1 408064 D 351745 CDS YP_961784.1 120597210 4659424 409599..411083 1 NC_008750.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: son:SO4230 glycerol kinase; glycerol kinase 411083 4659424 Sputw3181_0379 Shewanella sp. W3-18-1 glycerol kinase YP_961784.1 409599 D 351745 CDS YP_961785.1 120597211 4659435 complement(411190..411519) 1 NC_008750.1 KEGG: shm:Shewmr7_0374 hypothetical protein; hypothetical protein 411519 4659435 Sputw3181_0380 Shewanella sp. W3-18-1 hypothetical protein YP_961785.1 411190 R 351745 CDS YP_961786.1 120597212 4659445 411978..412436 1 NC_008750.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 412436 4659445 Sputw3181_0381 Shewanella sp. W3-18-1 cell division protein MraZ YP_961786.1 411978 D 351745 CDS YP_961787.1 120597213 4659446 412468..413409 1 NC_008750.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: shm:Shewmr7_0378 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 413409 mraW 4659446 mraW Shewanella sp. W3-18-1 S-adenosyl-methyltransferase MraW YP_961787.1 412468 D 351745 CDS YP_961788.1 120597214 4659460 413420..413734 1 NC_008750.1 PFAM: cell division protein FtsL; KEGG: she:Shewmr4_3577 cell division protein FtsL; cell division protein FtsL 413734 4659460 Sputw3181_0383 Shewanella sp. W3-18-1 cell division protein FtsL YP_961788.1 413420 D 351745 CDS YP_961789.1 120597215 4659861 413748..415499 1 NC_008750.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: son:SO4225 peptidoglycan synthetase FtsI; peptidoglycan glycosyltransferase 415499 4659861 Sputw3181_0384 Shewanella sp. W3-18-1 peptidoglycan glycosyltransferase YP_961789.1 413748 D 351745 CDS YP_961790.1 120597216 4659869 415496..416998 1 NC_008750.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 416998 murE 4659869 murE Shewanella sp. W3-18-1 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_961790.1 415496 D 351745 CDS YP_961791.1 120597217 4659870 416995..418377 1 NC_008750.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO4223 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 418377 4659870 Sputw3181_0386 Shewanella sp. W3-18-1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_961791.1 416995 D 351745 CDS YP_961792.1 120597218 4659877 418378..419460 1 NC_008750.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 419460 mraY 4659877 mraY Shewanella sp. W3-18-1 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_961792.1 418378 D 351745 CDS YP_961793.1 120597219 4659886 419467..420786 1 NC_008750.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 420786 murD 4659886 murD Shewanella sp. W3-18-1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_961793.1 419467 D 351745 CDS YP_961794.1 120597220 4659650 420776..421987 1 NC_008750.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: son:SO4220 cell division protein FtsW; cell division protein FtsW 421987 4659650 Sputw3181_0389 Shewanella sp. W3-18-1 cell division protein FtsW YP_961794.1 420776 D 351745 CDS YP_961795.1 120597221 4659908 421987..423075 1 NC_008750.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 423075 murG 4659908 murG Shewanella sp. W3-18-1 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_961795.1 421987 D 351745 CDS YP_961796.1 120597222 4659911 423078..424544 1 NC_008750.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 424544 murC 4659911 murC Shewanella sp. W3-18-1 UDP-N-acetylmuramate--L-alanine ligase YP_961796.1 423078 D 351745 CDS YP_961797.1 120597223 4659917 424696..425445 1 NC_008750.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: shm:Shewmr7_0388 polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein 425445 4659917 Sputw3181_0392 Shewanella sp. W3-18-1 polypeptide-transport-associated domain-containing protein YP_961797.1 424696 D 351745 CDS YP_961798.1 120597224 4659923 425426..426661 1 NC_008750.1 PFAM: cell division protein FtsA; KEGG: shm:Shewmr7_0389 cell division protein FtsA; cell division protein FtsA 426661 4659923 Sputw3181_0393 Shewanella sp. W3-18-1 cell division protein FtsA YP_961798.1 425426 D 351745 CDS YP_961799.1 120597225 4659929 426695..427882 1 NC_008750.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 427882 4659929 Sputw3181_0394 Shewanella sp. W3-18-1 cell division protein FtsZ YP_961799.1 426695 D 351745 CDS YP_961800.1 120597226 4659933 428063..428983 1 NC_008750.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 428983 lpxC 4659933 lpxC Shewanella sp. W3-18-1 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_961800.1 428063 D 351745 CDS YP_961801.1 120597227 4659934 complement(428995..429441) 1 NC_008750.1 KEGG: shm:Shewmr7_0392 hypothetical protein; hypothetical protein 429441 4659934 Sputw3181_0396 Shewanella sp. W3-18-1 hypothetical protein YP_961801.1 428995 R 351745 CDS YP_961802.1 120597228 4659940 429469..430368 1 NC_008750.1 PFAM: peptidase M23B; KEGG: shm:Shewmr7_0393 peptidase M23B; peptidase M23B 430368 4659940 Sputw3181_0397 Shewanella sp. W3-18-1 peptidase M23B YP_961802.1 429469 D 351745 CDS YP_961803.1 120597229 4659944 430429..433158 1 NC_008750.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 433158 4659944 Sputw3181_0398 Shewanella sp. W3-18-1 preprotein translocase subunit SecA YP_961803.1 430429 D 351745 CDS YP_961804.1 120597230 4661570 complement(439857..440729) 1 NC_008750.1 PFAM: Bile acid:sodium symporter; KEGG: shm:Shewmr7_3800 bile acid:sodium symporter; bile acid:sodium symporter 440729 4661570 Sputw3181_0399 Shewanella sp. W3-18-1 bile acid:sodium symporter YP_961804.1 439857 R 351745 CDS YP_961805.1 120597231 4659962 441158..442495 1 NC_008750.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 442495 4659962 Sputw3181_0400 Shewanella sp. W3-18-1 coproporphyrinogen III oxidase YP_961805.1 441158 D 351745 CDS YP_961806.1 120597232 4659969 442609..442842 1 NC_008750.1 KEGG: she:Shewmr4_3731 hypothetical protein; hypothetical protein 442842 4659969 Sputw3181_0401 Shewanella sp. W3-18-1 hypothetical protein YP_961806.1 442609 D 351745 CDS YP_961807.1 120597233 4659983 442889..443830 1 NC_008750.1 KEGG: son:SO4522 hypothetical protein; hypothetical protein 443830 4659983 Sputw3181_0402 Shewanella sp. W3-18-1 hypothetical protein YP_961807.1 442889 D 351745 CDS YP_961808.1 120597234 4659994 complement(443884..445884) 1 NC_008750.1 IrgA; binds ferric enterobactin; irgA gene expression is repressed by Fur and induced by the divergently transcribed upstream gene irgB; outer membrane protein; involved in iron metabolism; enterobactin receptor protein 445884 4659994 Sputw3181_0403 Shewanella sp. W3-18-1 enterobactin receptor protein YP_961808.1 443884 R 351745 CDS YP_961809.1 120597235 4660002 445952..446980 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4524 transcriptional regulator, LysR family; LysR family transcriptional regulator 446980 4660002 Sputw3181_0404 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_961809.1 445952 D 351745 CDS YP_961810.1 120597236 4660007 447112..447981 1 NC_008750.1 PFAM: Patatin; KEGG: shm:Shewmr7_3804 patatin; patatin 447981 4660007 Sputw3181_0405 Shewanella sp. W3-18-1 patatin YP_961810.1 447112 D 351745 CDS YP_961811.1 120597237 4660010 complement(447978..448919) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_3805 transcriptional regulator, LysR family; LysR family transcriptional regulator 448919 4660010 Sputw3181_0406 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_961811.1 447978 R 351745 CDS YP_961812.1 120597238 4660029 complement(448948..449727) 1 NC_008750.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: shm:Shewmr7_3806 protein of unknown function DUF6, transmembrane; hypothetical protein 449727 4660029 Sputw3181_0407 Shewanella sp. W3-18-1 hypothetical protein YP_961812.1 448948 R 351745 CDS YP_961813.1 120597239 4660038 450233..451723 1 NC_008750.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sfr:Sfri_0790 sulphate transporter; sulfate transporter 451723 4660038 Sputw3181_0408 Shewanella sp. W3-18-1 sulfate transporter YP_961813.1 450233 D 351745 CDS YP_961814.1 120597240 4660053 451758..452612 1 NC_008750.1 PFAM: UspA domain protein; KEGG: sfr:Sfri_0791 UspA domain protein; UspA domain-containing protein 452612 4660053 Sputw3181_0409 Shewanella sp. W3-18-1 UspA domain-containing protein YP_961814.1 451758 D 351745 CDS YP_961815.1 120597241 4660060 452703..453035 1 NC_008750.1 KEGG: sil:SPO2248 DnaK suppressor protein, putative; TraR/DksA family transcriptional regulator 453035 4660060 Sputw3181_0410 Shewanella sp. W3-18-1 TraR/DksA family transcriptional regulator YP_961815.1 452703 D 351745 CDS YP_961816.1 120597242 4660062 complement(453153..453773) 1 NC_008750.1 PFAM: Resolvase, N-terminal domain; KEGG: sfr:Sfri_3477 resolvase, N-terminal domain protein; resolvase domain-containing protein 453773 4660062 Sputw3181_0411 Shewanella sp. W3-18-1 resolvase domain-containing protein YP_961816.1 453153 R 351745 CDS YP_961817.1 120597243 4660065 453943..454203 1 NC_008750.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: sfr:Sfri_3472 prevent-host-death family protein; prevent-host-death family protein 454203 4660065 Sputw3181_0412 Shewanella sp. W3-18-1 prevent-host-death family protein YP_961817.1 453943 D 351745 CDS YP_961818.1 120597244 4660081 complement(454399..454806) 1 NC_008750.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: abo:ABO_1367 transcriptional regulator, MerR family; MerR family transcriptional regulator 454806 4660081 Sputw3181_0413 Shewanella sp. W3-18-1 MerR family transcriptional regulator YP_961818.1 454399 R 351745 CDS YP_961819.1 120597245 4660085 454902..455798 1 NC_008750.1 KEGG: abo:ABO_1368 cation efflux system permease, putative; cation efflux system permease 455798 4660085 Sputw3181_0414 Shewanella sp. W3-18-1 cation efflux system permease YP_961819.1 454902 D 351745 CDS YP_961820.1 120597246 4660099 455802..456314 1 NC_008750.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 456314 4660099 Sputw3181_0415 Shewanella sp. W3-18-1 lipoprotein signal peptidase YP_961820.1 455802 D 351745 CDS YP_961821.1 120597247 4660120 456546..457625 1 NC_008750.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: bxe:Bxe_C0885 transposase, TnpA; transposase, IS204/IS1001/IS1096/IS1165 family protein 457625 4660120 Sputw3181_0416 Shewanella sp. W3-18-1 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_961821.1 456546 D 351745 CDS YP_961822.1 120597248 4660141 complement(457898..459010) 1 NC_008750.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: sec:SC2060 propanediol utilization: propanol dehydrogenase; iron-containing alcohol dehydrogenase 459010 4660141 Sputw3181_0417 Shewanella sp. W3-18-1 iron-containing alcohol dehydrogenase YP_961822.1 457898 R 351745 CDS YP_961823.1 120597249 4660194 complement(459026..460420) 1 NC_008750.1 PFAM: aldehyde dehydrogenase; KEGG: stm:STM2051 CoA-dependent propionaldehyde dehydrogenase; aldehyde dehydrogenase 460420 4660194 Sputw3181_0418 Shewanella sp. W3-18-1 aldehyde dehydrogenase YP_961823.1 459026 R 351745 CDS YP_961824.1 120597250 4660305 complement(460417..460926) 1 NC_008750.1 KEGG: ccr:CC2181 GlcG protein, putative; hypothetical protein 460926 4660305 Sputw3181_0419 Shewanella sp. W3-18-1 hypothetical protein YP_961824.1 460417 R 351745 CDS YP_961825.1 120597251 4661038 complement(460959..461237) 1 NC_008750.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: ssn:SSO_2069 putative propanediol utilization protein: polyhedral bodies; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 461237 4661038 Sputw3181_0420 Shewanella sp. W3-18-1 ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_961825.1 460959 R 351745 CDS YP_961826.1 120597252 4660959 complement(461242..461727) 1 NC_008750.1 KEGG: sec:SC2056 propanediol utilization; propanediol utilization 461727 4660959 Sputw3181_0421 Shewanella sp. W3-18-1 propanediol utilization YP_961826.1 461242 R 351745 CDS YP_961827.1 120597253 4661002 complement(461735..462370) 1 NC_008750.1 PFAM: Propanediol utilization protein; KEGG: sec:SC2055 propanediol utilization; propanediol utilization protein 462370 4661002 Sputw3181_0422 Shewanella sp. W3-18-1 propanediol utilization protein YP_961827.1 461735 R 351745 CDS YP_961828.1 120597254 4660435 complement(462375..463241) 1 NC_008750.1 PFAM: microcompartments protein; KEGG: stt:t0828 putative propanediol utilization protein PduK; microcompartments protein 463241 4660435 Sputw3181_0423 Shewanella sp. W3-18-1 microcompartments protein YP_961828.1 462375 R 351745 CDS YP_961829.1 120597255 4660445 complement(463269..463559) 1 NC_008750.1 PFAM: microcompartments protein; KEGG: ssn:SSO_2065 putative propanediol utilization protein: polyhedral bodies; microcompartment protein 463559 4660445 Sputw3181_0424 Shewanella sp. W3-18-1 microcompartment protein YP_961829.1 463269 R 351745 CDS YP_961830.1 120597256 4660446 complement(463631..464458) 1 NC_008750.1 TIGRFAM: MIP family channel proteins; PFAM: major intrinsic protein; KEGG: stm:STM2037 Propanediol utilization: propanediol diffusion facilitator; MIP family channel protein 464458 4660446 Sputw3181_0425 Shewanella sp. W3-18-1 MIP family channel protein YP_961830.1 463631 R 351745 CDS YP_961831.1 120597257 4660450 complement(464493..465413) 1 NC_008750.1 TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: ecc:c4538 putative pyruvate formate-lyase 3 activating enzyme; glycyl-radical activating family protein 465413 4660450 Sputw3181_0426 Shewanella sp. W3-18-1 glycyl-radical activating family protein YP_961831.1 464493 R 351745 CDS YP_961832.1 120597258 4660457 complement(465552..468095) 1 NC_008750.1 KEGG: ctc:CTC00936 formate acetyltransferase 2; TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; pyruvate formate-lyase 468095 4660457 Sputw3181_0427 Shewanella sp. W3-18-1 pyruvate formate-lyase YP_961832.1 465552 R 351745 CDS YP_961833.1 120597259 4660460 complement(468120..468935) 1 NC_008750.1 PFAM: microcompartments protein; KEGG: sec:SC2047 propanediol utilization: polyhedral bodies; microcompartment protein 468935 4660460 Sputw3181_0428 Shewanella sp. W3-18-1 microcompartment protein YP_961833.1 468120 R 351745 CDS YP_961834.1 120597260 4660463 complement(468932..469234) 1 NC_008750.1 PFAM: microcompartments protein; KEGG: ssn:SSO_2058 putative propanediol utilization protein: polyhedral bodies; microcompartment protein 469234 4660463 Sputw3181_0429 Shewanella sp. W3-18-1 microcompartment protein YP_961834.1 468932 R 351745 CDS YP_961835.1 120597261 4660468 complement(470247..471107) 1 NC_008750.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: bsu:BG10319 PTS fructose-specific enzyme IID component; PTS system mannose/fructose/sorbose family transporter subunit IID 471107 4660468 Sputw3181_0430 Shewanella sp. W3-18-1 PTS system mannose/fructose/sorbose family transporter subunit IID YP_961835.1 470247 R 351745 CDS YP_961836.1 120597262 4660226 complement(471118..471915) 1 NC_008750.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS, sorbose-specific IIC subunit; KEGG: bld:BLi02829 PTS fructose-specific enzyme IIC component; RBL00186; PTS system mannose/fructose/sorbose family transporter subunit IIC 471915 4660226 Sputw3181_0431 Shewanella sp. W3-18-1 PTS system mannose/fructose/sorbose family transporter subunit IIC YP_961836.1 471118 R 351745 CDS YP_961837.1 120597263 4660482 complement(471931..472245) 1 NC_008750.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: bsu:BG10317 PTS fructose-specific enzyme IIB component; PTS system sorbose subfamily transporter subunit IIB 472245 4660482 Sputw3181_0432 Shewanella sp. W3-18-1 PTS system sorbose subfamily transporter subunit IIB YP_961837.1 471931 R 351745 CDS YP_961838.1 120597264 4660488 complement(472311..473234) 1 NC_008750.1 PFAM: transposase, IS4 family protein; KEGG: sgl:SG1040 transposase; transposase, IS4 family protein 473234 4660488 Sputw3181_0433 Shewanella sp. W3-18-1 transposase, IS4 family protein YP_961838.1 472311 R 351745 CDS YP_961839.1 120597265 4660490 complement(473297..473638) 1 NC_008750.1 PFAM: IS1 transposase; KEGG: sec:SC1834 IS1 transposase; IS1 transposase 473638 4660490 Sputw3181_0434 Shewanella sp. W3-18-1 IS1 transposase YP_961839.1 473297 R 351745 CDS YP_961840.1 120597266 4660492 473984..474586 1 NC_008750.1 PFAM: phage integrase family protein; KEGG: ecc:c0291 hypothetical protein; phage integrase family protein 474586 4660492 Sputw3181_0435 Shewanella sp. W3-18-1 phage integrase family protein YP_961840.1 473984 D 351745 CDS YP_961841.1 120597267 4660495 474829..475860 1 NC_008750.1 KEGG: sbo:SBO_P069 IS630 ORF; IS630 orf 475860 4660495 Sputw3181_0436 Shewanella sp. W3-18-1 IS630 orf YP_961841.1 474829 D 351745 CDS YP_961842.1 120597268 4660505 complement(476387..477268) 1 NC_008750.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: stm:STM2036 Propanediol utilization: transcriptional regulation, AraC family; helix-turn-helix domain-containing protein 477268 4660505 Sputw3181_0437 Shewanella sp. W3-18-1 helix-turn-helix domain-containing protein YP_961842.1 476387 R 351745 CDS YP_961843.1 120597269 4660507 complement(477517..477924) 1 NC_008750.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: abo:ABO_1367 transcriptional regulator, MerR family; MerR family transcriptional regulator 477924 4660507 Sputw3181_0438 Shewanella sp. W3-18-1 MerR family transcriptional regulator YP_961843.1 477517 R 351745 CDS YP_961844.1 120597270 4660509 478020..478916 1 NC_008750.1 KEGG: abo:ABO_1368 cation efflux system permease, putative; cation efflux system permease 478916 4660509 Sputw3181_0439 Shewanella sp. W3-18-1 cation efflux system permease YP_961844.1 478020 D 351745 CDS YP_961845.1 120597271 4660520 478920..479432 1 NC_008750.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 479432 4660520 Sputw3181_0440 Shewanella sp. W3-18-1 lipoprotein signal peptidase YP_961845.1 478920 D 351745 CDS YP_961846.1 120597272 4660523 479664..480743 1 NC_008750.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: bxe:Bxe_C0885 transposase, TnpA; transposase, IS204/IS1001/IS1096/IS1165 family protein 480743 4660523 Sputw3181_0441 Shewanella sp. W3-18-1 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_961846.1 479664 D 351745 CDS YP_961847.1 120597273 4660532 481036..484116 1 NC_008750.1 PFAM: transposase Tn3 family protein; KEGG: sfr:Sfri_3470 transposase Tn3 family protein; transposase Tn3 family protein 484116 4660532 Sputw3181_0442 Shewanella sp. W3-18-1 transposase Tn3 family protein YP_961847.1 481036 D 351745 CDS YP_961848.1 120597274 4660538 484439..484903 1 NC_008750.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: shm:Shewmr7_3807 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase 484903 4660538 Sputw3181_0443 Shewanella sp. W3-18-1 RNA methyltransferase YP_961848.1 484439 D 351745 CDS YP_961849.1 120597275 4660547 485572..486111 1 NC_008750.1 KEGG: she:Shewmr4_0915 hypothetical protein; hypothetical protein 486111 4660547 Sputw3181_0444 Shewanella sp. W3-18-1 hypothetical protein YP_961849.1 485572 D 351745 CDS YP_961850.1 120597276 4660556 486249..486680 1 NC_008750.1 KEGG: she:Shewmr4_0329 hypothetical protein; hypothetical protein 486680 4660556 Sputw3181_0445 Shewanella sp. W3-18-1 hypothetical protein YP_961850.1 486249 D 351745 CDS YP_961851.1 120597277 4660572 complement(487394..487945) 1 NC_008750.1 KEGG: she:Shewmr4_3739 hypothetical protein; hypothetical protein 487945 4660572 Sputw3181_0446 Shewanella sp. W3-18-1 hypothetical protein YP_961851.1 487394 R 351745 CDS YP_961852.1 120597278 4660576 488276..490303 1 NC_008750.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: son:SO4537 peptidase, putative; peptidase S9 prolyl oligopeptidase 490303 4660576 Sputw3181_0447 Shewanella sp. W3-18-1 peptidase S9 prolyl oligopeptidase YP_961852.1 488276 D 351745 CDS YP_961853.1 120597279 4660582 complement(490386..491819) 1 NC_008750.1 PFAM: peptidase M16 domain protein; KEGG: shm:Shewmr7_3814 peptidase M16 domain protein; peptidase M16 domain-containing protein 491819 4660582 Sputw3181_0448 Shewanella sp. W3-18-1 peptidase M16 domain-containing protein YP_961853.1 490386 R 351745 CDS YP_961854.1 120597280 4660586 complement(491816..493147) 1 NC_008750.1 PFAM: peptidase M16 domain protein; KEGG: shm:Shewmr7_3815 peptidase M16 domain protein; peptidase M16 domain-containing protein 493147 4660586 Sputw3181_0449 Shewanella sp. W3-18-1 peptidase M16 domain-containing protein YP_961854.1 491816 R 351745 CDS YP_961855.1 120597281 4660599 complement(494625..495299) 1 NC_008750.1 PFAM: cyclic nucleotide-binding; KEGG: son:SO4298 cyclic nucleotide binding protein, putative; cyclic nucleotide-binding protein 495299 4660599 Sputw3181_0450 Shewanella sp. W3-18-1 cyclic nucleotide-binding protein YP_961855.1 494625 R 351745 CDS YP_961856.1 120597282 4660600 complement(495603..496328) 1 NC_008750.1 PFAM: purine and other phosphorylases, family 1; KEGG: son:SO4297 uridine phosphorylase, putative; purine phosphorylase family protein 1 496328 4660600 Sputw3181_0451 Shewanella sp. W3-18-1 purine phosphorylase family protein 1 YP_961856.1 495603 R 351745 CDS YP_961857.1 120597283 4660613 complement(496399..497604) 1 NC_008750.1 PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: son:SO4296 NupC family protein; Na+ dependent nucleoside transporter 497604 4660613 Sputw3181_0452 Shewanella sp. W3-18-1 Na+ dependent nucleoside transporter YP_961857.1 496399 R 351745 CDS YP_961858.1 120597284 4660615 complement(497601..498152) 1 NC_008750.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: son:SO4295 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 498152 4660615 Sputw3181_0453 Shewanella sp. W3-18-1 NAD(P)H dehydrogenase (quinone) YP_961858.1 497601 R 351745 CDS YP_961859.1 120597285 4660632 complement(498540..500621) 1 NC_008750.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: sdn:Sden_3668 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA 500621 4660632 Sputw3181_0454 Shewanella sp. W3-18-1 flagellar biosynthesis protein FlhA YP_961859.1 498540 R 351745 CDS YP_961860.1 120597286 4660638 complement(500637..501767) 1 NC_008750.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: sdn:Sden_3667 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB 501767 4660638 Sputw3181_0455 Shewanella sp. W3-18-1 flagellar biosynthetic protein FlhB YP_961860.1 500637 R 351745 CDS YP_961861.1 120597287 4660645 complement(501764..502462) 1 NC_008750.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: sdn:Sden_3666 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR 502462 4660645 Sputw3181_0456 Shewanella sp. W3-18-1 flagellar biosynthetic protein FliR YP_961861.1 501764 R 351745 CDS YP_961862.1 120597288 4660657 complement(502545..502814) 1 NC_008750.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: sdn:Sden_3665 export protein FliQ, family 3; flagellar biosynthetic protein FliQ 502814 4660657 Sputw3181_0457 Shewanella sp. W3-18-1 flagellar biosynthetic protein FliQ YP_961862.1 502545 R 351745 CDS YP_961863.1 120597289 4660659 complement(502819..503553) 1 NC_008750.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 503553 fliP 4660659 fliP Shewanella sp. W3-18-1 flagellar biosynthesis protein FliP YP_961863.1 502819 R 351745 CDS YP_961864.1 120597290 4660669 complement(503550..503936) 1 NC_008750.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: sdn:Sden_3663 surface presentation of antigens (SpoA) protein; flagellar motor switch protein FliN 503936 4660669 Sputw3181_0459 Shewanella sp. W3-18-1 flagellar motor switch protein FliN YP_961864.1 503550 R 351745 CDS YP_961865.1 120597291 4660677 complement(503902..504783) 1 NC_008750.1 KEGG: sdn:Sden_3662 hypothetical protein; hypothetical protein 504783 4660677 Sputw3181_0460 Shewanella sp. W3-18-1 hypothetical protein YP_961865.1 503902 R 351745 CDS YP_961866.1 120597292 4660685 505859..507169 1 NC_008750.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: sdn:Sden_3661 sigma-54 factor, interaction region; sigma-54 dependent trancsriptional regulator 507169 4660685 Sputw3181_0461 Shewanella sp. W3-18-1 sigma-54 dependent trancsriptional regulator YP_961866.1 505859 D 351745 CDS YP_961867.1 120597293 4660688 507196..507534 1 NC_008750.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: sdn:Sden_3660 flagellar hook-basal body complex protein (FliE); flagellar hook-basal body complex subunit FliE 507534 4660688 Sputw3181_0462 Shewanella sp. W3-18-1 flagellar hook-basal body complex subunit FliE YP_961867.1 507196 D 351745 CDS YP_961868.1 120597294 4660691 507547..509223 1 NC_008750.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar MS-ring protein 509223 fliF 4660691 fliF Shewanella sp. W3-18-1 flagellar MS-ring protein YP_961868.1 507547 D 351745 CDS YP_961869.1 120597295 4660712 509240..510226 1 NC_008750.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 510226 fliG 4660712 fliG Shewanella sp. W3-18-1 flagellar motor switch protein G YP_961869.1 509240 D 351745 CDS YP_961870.1 120597296 4660716 510226..510933 1 NC_008750.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 510933 fliH 4660716 fliH Shewanella sp. W3-18-1 flagellar assembly protein H YP_961870.1 510226 D 351745 CDS YP_961871.1 120597297 4660720 510911..512260 1 NC_008750.1 KEGG: sdn:Sden_3656 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein; SMART: AAA ATPase; FliI/YscN family ATPase 512260 4660720 Sputw3181_0466 Shewanella sp. W3-18-1 FliI/YscN family ATPase YP_961871.1 510911 D 351745 CDS YP_961872.1 120597298 4660730 512238..512660 1 NC_008750.1 KEGG: sdn:Sden_3655 hypothetical protein; hypothetical protein 512660 4660730 Sputw3181_0467 Shewanella sp. W3-18-1 hypothetical protein YP_961872.1 512238 D 351745 CDS YP_961873.1 120597299 4660734 complement(512737..513192) 1 NC_008750.1 KEGG: sdn:Sden_3654 hypothetical protein; hypothetical protein 513192 4660734 Sputw3181_0468 Shewanella sp. W3-18-1 hypothetical protein YP_961873.1 512737 R 351745 CDS YP_961874.1 120597300 4660738 complement(513182..513466) 1 NC_008750.1 KEGG: sdn:Sden_3653 hypothetical protein; hypothetical protein 513466 4660738 Sputw3181_0469 Shewanella sp. W3-18-1 hypothetical protein YP_961874.1 513182 R 351745 CDS YP_961875.1 120597301 4660744 complement(513566..514303) 1 NC_008750.1 PFAM: SAF domain; KEGG: sdn:Sden_3652 flageller protein FlgA; SAF domain-containing protein 514303 4660744 Sputw3181_0470 Shewanella sp. W3-18-1 SAF domain-containing protein YP_961875.1 513566 R 351745 CDS YP_961876.1 120597302 4660763 514401..514751 1 NC_008750.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar basal body rod protein FlgB 514751 flgB 4660763 flgB Shewanella sp. W3-18-1 flagellar basal body rod protein FlgB YP_961876.1 514401 D 351745 CDS YP_961877.1 120597303 4660766 514760..515176 1 NC_008750.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: sdn:Sden_3650 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 515176 4660766 Sputw3181_0472 Shewanella sp. W3-18-1 flagellar basal-body rod protein FlgC YP_961877.1 514760 D 351745 CDS YP_961878.1 120597304 4660770 515178..515840 1 NC_008750.1 PFAM: flagellar hook capping protein; KEGG: sdn:Sden_3649 flagellar hook capping protein; flagellar hook capping protein 515840 4660770 Sputw3181_0473 Shewanella sp. W3-18-1 flagellar hook capping protein YP_961878.1 515178 D 351745 CDS YP_961879.1 120597305 4660789 515862..517049 1 NC_008750.1 the hook connects flagellar basal body to the flagellar filament; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar hook protein FlgE 517049 flgE 4660789 flgE Shewanella sp. W3-18-1 flagellar hook protein FlgE YP_961879.1 515862 D 351745 CDS YP_961880.1 120597306 4660807 517064..517798 1 NC_008750.1 TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; KEGG: sdn:Sden_3647 flagellar basal-body rod FlgF; flagellar basal-body rod protein FlgF 517798 4660807 Sputw3181_0475 Shewanella sp. W3-18-1 flagellar basal-body rod protein FlgF YP_961880.1 517064 D 351745 CDS YP_961881.1 120597307 4660864 517810..518595 1 NC_008750.1 TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sdn:Sden_3646 flagellar basal-body rod FlgG; flagellar basal-body rod protein FlgG 518595 4660864 Sputw3181_0476 Shewanella sp. W3-18-1 flagellar basal-body rod protein FlgG YP_961881.1 517810 D 351745 CDS YP_961882.1 120597308 4660886 518606..519268 1 NC_008750.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 519268 flgH 4660886 flgH Shewanella sp. W3-18-1 flagellar basal body L-ring protein YP_961882.1 518606 D 351745 CDS YP_961883.1 120597309 4660972 519284..520402 1 NC_008750.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 520402 flgI 4660972 flgI Shewanella sp. W3-18-1 flagellar basal body P-ring protein YP_961883.1 519284 D 351745 CDS YP_961884.1 120597310 4661838 520402..520809 1 NC_008750.1 FlgJ; flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; like the lateral flagella FlgJ in Vibrio parahaemolyticus this protein does not contains a C-terminal muramidase domain; peptidoglycan hydrolase 520809 flgJ 4661838 flgJ Shewanella sp. W3-18-1 peptidoglycan hydrolase YP_961884.1 520402 D 351745 CDS YP_961885.1 120597311 4661819 520806..522179 1 NC_008750.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: sdn:Sden_3642 flagellar hook-associated protein; flagellar hook-associated protein FlgK 522179 4661819 Sputw3181_0480 Shewanella sp. W3-18-1 flagellar hook-associated protein FlgK YP_961885.1 520806 D 351745 CDS YP_961886.1 120597312 4661642 522191..523108 1 NC_008750.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: sdn:Sden_3641 flagellin-like protein; flagellar hook-associated protein 3 523108 4661642 Sputw3181_0481 Shewanella sp. W3-18-1 flagellar hook-associated protein 3 YP_961886.1 522191 D 351745 CDS YP_961887.1 120597313 4661541 523121..524134 1 NC_008750.1 KEGG: sdn:Sden_3640 hypothetical protein; hypothetical protein 524134 4661541 Sputw3181_0482 Shewanella sp. W3-18-1 hypothetical protein YP_961887.1 523121 D 351745 CDS YP_961888.1 120597314 4659081 524280..525083 1 NC_008750.1 PFAM: flagellin domain protein; KEGG: sdn:Sden_3639 flagellin-like protein; flagellin domain-containing protein 525083 4659081 Sputw3181_0483 Shewanella sp. W3-18-1 flagellin domain-containing protein YP_961888.1 524280 D 351745 CDS YP_961889.1 120597315 4660765 525321..526133 1 NC_008750.1 PFAM: flagellin domain protein; KEGG: sdn:Sden_3639 flagellin-like protein; flagellin domain-containing protein 526133 4660765 Sputw3181_0484 Shewanella sp. W3-18-1 flagellin domain-containing protein YP_961889.1 525321 D 351745 CDS YP_961890.1 120597316 4660728 526430..527776 1 NC_008750.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: sdn:Sden_3638 flagellar hook-associated 2-like protein; flagellar hook-associated 2 domain-containing protein 527776 4660728 Sputw3181_0485 Shewanella sp. W3-18-1 flagellar hook-associated 2 domain-containing protein YP_961890.1 526430 D 351745 CDS YP_961891.1 120597317 4660689 527790..528170 1 NC_008750.1 PFAM: flagellar protein FliS; KEGG: sdn:Sden_3637 flagellar protein FliS; flagellar protein FliS 528170 4660689 Sputw3181_0486 Shewanella sp. W3-18-1 flagellar protein FliS YP_961891.1 527790 D 351745 CDS YP_961892.1 120597318 4660654 528139..528465 1 NC_008750.1 KEGG: sdn:Sden_3636 hypothetical protein; hypothetical protein 528465 4660654 Sputw3181_0487 Shewanella sp. W3-18-1 hypothetical protein YP_961892.1 528139 D 351745 CDS YP_961893.1 120597319 4660639 528455..529636 1 NC_008750.1 PFAM: flagellar hook-length control protein; KEGG: sdn:Sden_3635 flagellar hook-length control protein; flagellar hook-length control protein 529636 4660639 Sputw3181_0488 Shewanella sp. W3-18-1 flagellar hook-length control protein YP_961893.1 528455 D 351745 CDS YP_961894.1 120597320 4660593 529652..530119 1 NC_008750.1 PFAM: flagellar basal body-associated protein FliL; KEGG: sdn:Sden_3634 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 530119 4660593 Sputw3181_0489 Shewanella sp. W3-18-1 flagellar basal body-associated protein FliL YP_961894.1 529652 D 351745 CDS YP_961895.1 120597321 4660570 530129..530845 1 NC_008750.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 530845 fliA 4660570 fliA Shewanella sp. W3-18-1 flagellar biosynthesis sigma factor YP_961895.1 530129 D 351745 CDS YP_961896.1 120597322 4660335 530868..531725 1 NC_008750.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: sdn:Sden_3632 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 531725 4660335 Sputw3181_0491 Shewanella sp. W3-18-1 MotA/TolQ/ExbB proton channel YP_961896.1 530868 D 351745 CDS YP_961897.1 120597323 4660491 531725..532642 1 NC_008750.1 PFAM: OmpA/MotB domain protein; KEGG: sdn:Sden_3631 OmpA/MotB; OmpA/MotB domain-containing protein 532642 4660491 Sputw3181_0492 Shewanella sp. W3-18-1 OmpA/MotB domain-containing protein YP_961897.1 531725 D 351745 CDS YP_961898.1 120597324 4660311 532677..533111 1 NC_008750.1 PFAM: type IV pilus assembly PilZ; KEGG: sdn:Sden_3630 type IV pilus assembly PilZ; type IV pilus assembly PilZ 533111 4660311 Sputw3181_0493 Shewanella sp. W3-18-1 type IV pilus assembly PilZ YP_961898.1 532677 D 351745 CDS YP_961899.1 120597325 4660461 533120..533407 1 NC_008750.1 KEGG: sdn:Sden_3629 hypothetical protein; hypothetical protein 533407 4660461 Sputw3181_0494 Shewanella sp. W3-18-1 hypothetical protein YP_961899.1 533120 D 351745 CDS YP_961900.1 120597326 4660434 complement(533557..533862) 1 NC_008750.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 533862 fis 4660434 fis Shewanella sp. W3-18-1 DNA-binding protein Fis YP_961900.1 533557 R 351745 CDS YP_961901.1 120597327 4660052 complement(533879..534847) 1 NC_008750.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; dihydroorotate dehydrogenase; KEGG: son:SO0394 tRNA-dihydrouridine synthase B; nifR3 family TIM-barrel protein 534847 4660052 Sputw3181_0496 Shewanella sp. W3-18-1 nifR3 family TIM-barrel protein YP_961901.1 533879 R 351745 CDS YP_961902.1 120597328 4660040 complement(535022..535903) 1 NC_008750.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 535903 prmA 4660040 prmA Shewanella sp. W3-18-1 50S ribosomal protein L11 methyltransferase YP_961902.1 535022 R 351745 CDS YP_961903.1 120597329 4659825 536358..537083 1 NC_008750.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 537083 4659825 Sputw3181_0498 Shewanella sp. W3-18-1 fumarate reductase cytochrome b-556 subunit YP_961903.1 536358 D 351745 CDS YP_961904.1 120597330 4660022 537265..537936 1 NC_008750.1 PFAM: fumarate reductase respiratory complex, transmembrane subunit; KEGG: she:Shewmr4_0403 fumarate reductase respiratory complex, transmembrane subunit; fumarate reductase respiratory complex, transmembrane subunit 537936 4660022 Sputw3181_0499 Shewanella sp. W3-18-1 fumarate reductase respiratory complex, transmembrane subunit YP_961904.1 537265 D 351745 CDS YP_961905.1 120597331 4661359 538022..540028 1 NC_008750.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 540028 4661359 Sputw3181_0500 Shewanella sp. W3-18-1 fumarate reductase flavoprotein subunit YP_961905.1 538022 D 351745 CDS YP_961906.1 120597332 4659895 540028..540759 1 NC_008750.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 540759 frdB 4659895 frdB Shewanella sp. W3-18-1 fumarate reductase iron-sulfur subunit YP_961906.1 540028 D 351745 CDS YP_961907.1 120597333 4659882 complement(540810..541094) 1 NC_008750.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: she:Shewmr4_0406 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 541094 4659882 Sputw3181_0502 Shewanella sp. W3-18-1 antibiotic biosynthesis monooxygenase YP_961907.1 540810 R 351745 CDS YP_961908.1 120597334 4659857 complement(541091..542113) 1 NC_008750.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0401 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase 542113 4659857 Sputw3181_0503 Shewanella sp. W3-18-1 alcohol dehydrogenase YP_961908.1 541091 R 351745 CDS YP_961909.1 120597335 4659129 542248..543174 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_0408 transcriptional regulator, LysR family; LysR family transcriptional regulator 543174 4659129 Sputw3181_0504 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_961909.1 542248 D 351745 CDS YP_961910.1 120597336 4659401 complement(543226..544491) 1 NC_008750.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 544491 rho 4659401 rho Shewanella sp. W3-18-1 transcription termination factor Rho YP_961910.1 543226 R 351745 CDS YP_961911.1 120597337 4659347 complement(544704..545030) 1 NC_008750.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: shm:Shewmr7_3615 thioredoxin; thioredoxin 545030 4659347 Sputw3181_0506 Shewanella sp. W3-18-1 thioredoxin YP_961911.1 544704 R 351745 CDS YP_961912.1 120597338 4659320 545183..546502 1 NC_008750.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 546502 4659320 Sputw3181_0507 Shewanella sp. W3-18-1 ATP-dependent RNA helicase RhlB YP_961912.1 545183 D 351745 CDS YP_961913.1 120597339 4659293 546503..547429 1 NC_008750.1 PFAM: Ppx/GppA phosphatase; KEGG: shm:Shewmr7_3613 Ppx/GppA phosphatase; Ppx/GppA phosphatase 547429 4659293 Sputw3181_0508 Shewanella sp. W3-18-1 Ppx/GppA phosphatase YP_961913.1 546503 D 351745 CDS YP_961914.1 120597340 4659277 complement(547753..548289) 1 NC_008750.1 KEGG: shm:Shewmr7_3612 hypothetical protein; hypothetical protein 548289 4659277 Sputw3181_0509 Shewanella sp. W3-18-1 hypothetical protein YP_961914.1 547753 R 351745 CDS YP_961915.1 120597341 4659066 complement(548838..549242) 1 NC_008750.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: she:Shewmr4_0414 mutator MutT protein; mutator MutT protein 549242 4659066 Sputw3181_0510 Shewanella sp. W3-18-1 mutator MutT protein YP_961915.1 548838 R 351745 CDS YP_961916.1 120597342 4659079 complement(549294..549503) 1 NC_008750.1 PFAM: protein of unknown function DUF329; KEGG: shm:Shewmr7_3610 protein of unknown function DUF329; hypothetical protein 549503 4659079 Sputw3181_0511 Shewanella sp. W3-18-1 hypothetical protein YP_961916.1 549294 R 351745 CDS YP_961917.1 120597343 4659069 complement(549661..550395) 1 NC_008750.1 PFAM: protein of unknown function DUF1342; KEGG: she:Shewmr4_0416 protein of unknown function DUF1342; hypothetical protein 550395 4659069 Sputw3181_0512 Shewanella sp. W3-18-1 hypothetical protein YP_961917.1 549661 R 351745 CDS YP_961918.1 120597344 4659186 complement(550388..551005) 1 NC_008750.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 551005 coaE 4659186 coaE Shewanella sp. W3-18-1 dephospho-CoA kinase YP_961918.1 550388 R 351745 CDS YP_961919.1 120597345 4659171 complement(551348..552274) 1 NC_008750.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: son:SO0414 leader peptidase (prepilin peptidase) / N-methyltransferase; prepilin peptidase 552274 4659171 Sputw3181_0514 Shewanella sp. W3-18-1 prepilin peptidase YP_961919.1 551348 R 351745 CDS YP_961920.1 120597346 4658838 complement(552474..553739) 1 NC_008750.1 PFAM: type II secretion system protein; KEGG: shm:Shewmr7_3606 type II secretion system protein; type II secretion system protein 553739 4658838 Sputw3181_0515 Shewanella sp. W3-18-1 type II secretion system protein YP_961920.1 552474 R 351745 CDS YP_961921.1 120597347 4660892 complement(554190..555899) 1 NC_008750.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO0416 type IV pilus biogenesis protein PilB; type IV-A pilus assembly ATPase PilB 555899 4660892 Sputw3181_0516 Shewanella sp. W3-18-1 type IV-A pilus assembly ATPase PilB YP_961921.1 554190 R 351745 CDS YP_961922.1 120597348 4660922 complement(555964..556422) 1 NC_008750.1 KEGG: par:Psyc_0240 probable pilus assembly protein major pilin PilA; putative pilus assembly protein major pilin PilA 556422 4660922 Sputw3181_0517 Shewanella sp. W3-18-1 putative pilus assembly protein major pilin PilA YP_961922.1 555964 R 351745 CDS YP_961923.1 120597349 4658565 complement(557228..558307) 1 NC_008750.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: bxe:Bxe_C0885 transposase, TnpA; transposase, IS204/IS1001/IS1096/IS1165 family protein 558307 4658565 Sputw3181_0518 Shewanella sp. W3-18-1 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_961923.1 557228 R 351745 CDS YP_961924.1 120597350 4658715 complement(558539..559051) 1 NC_008750.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 559051 4658715 Sputw3181_0519 Shewanella sp. W3-18-1 lipoprotein signal peptidase YP_961924.1 558539 R 351745 CDS YP_961925.1 120597351 4658701 complement(559055..559951) 1 NC_008750.1 KEGG: abo:ABO_1368 cation efflux system permease, putative; cation efflux system permease 559951 4658701 Sputw3181_0520 Shewanella sp. W3-18-1 cation efflux system permease YP_961925.1 559055 R 351745 CDS YP_961926.1 120597352 4658467 560047..560454 1 NC_008750.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: abo:ABO_1367 transcriptional regulator, MerR family; MerR family transcriptional regulator 560454 4658467 Sputw3181_0521 Shewanella sp. W3-18-1 MerR family transcriptional regulator YP_961926.1 560047 D 351745 CDS YP_961927.1 120597353 4658648 complement(560678..561565) 1 NC_008750.1 KEGG: shm:Shewmr7_3603 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 561565 4658648 Sputw3181_0522 Shewanella sp. W3-18-1 nicotinate-nucleotide pyrophosphorylase YP_961927.1 560678 R 351745 CDS YP_961928.1 120597354 4658637 561884..562426 1 NC_008750.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: son:SO0421 AmpD protein; N-acetyl-anhydromuranmyl-L-alanine amidase 562426 4658637 Sputw3181_0523 Shewanella sp. W3-18-1 N-acetyl-anhydromuranmyl-L-alanine amidase YP_961928.1 561884 D 351745 CDS YP_961929.1 120597355 4657740 562626..563477 1 NC_008750.1 involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 563477 4657740 Sputw3181_0524 Shewanella sp. W3-18-1 regulatory protein AmpE YP_961929.1 562626 D 351745 CDS YP_961930.1 120597356 4658189 563987..564739 1 NC_008750.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 564739 pdhR 4658189 pdhR Shewanella sp. W3-18-1 transcriptional regulator PdhR YP_961930.1 563987 D 351745 CDS YP_961931.1 120597357 4658178 564822..567488 1 NC_008750.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 567488 aceE 4658178 aceE Shewanella sp. W3-18-1 pyruvate dehydrogenase subunit E1 YP_961931.1 564822 D 351745 CDS YP_961932.1 120597358 4658146 567501..569510 1 NC_008750.1 KEGG: son:SO0425 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 569510 4658146 Sputw3181_0527 Shewanella sp. W3-18-1 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_961932.1 567501 D 351745 CDS YP_961933.1 120597359 4658116 569658..571085 1 NC_008750.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 571085 4658116 Sputw3181_0528 Shewanella sp. W3-18-1 dihydrolipoamide dehydrogenase YP_961933.1 569658 D 351745 CDS YP_961934.1 120597360 4658078 571217..575680 1 NC_008750.1 KEGG: she:Shewmr4_0431 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 575680 4658078 Sputw3181_0529 Shewanella sp. W3-18-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_961934.1 571217 D 351745 CDS YP_961935.1 120597361 4661005 575774..577990 1 NC_008750.1 PFAM: surface antigen (D15); Patatin; KEGG: she:Shewmr4_0432 patatin; patatin 577990 4661005 Sputw3181_0530 Shewanella sp. W3-18-1 patatin YP_961935.1 575774 D 351745 CDS YP_961936.1 120597362 4657708 578191..580233 1 NC_008750.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO0429 peptidase, M13 family; endothelin-converting protein 1 580233 4657708 Sputw3181_0531 Shewanella sp. W3-18-1 endothelin-converting protein 1 YP_961936.1 578191 D 351745 CDS YP_961937.1 120597363 4657706 complement(580282..580608) 1 NC_008750.1 KEGG: son:SO0430 hypothetical protein; hypothetical protein 580608 4657706 Sputw3181_0532 Shewanella sp. W3-18-1 hypothetical protein YP_961937.1 580282 R 351745 CDS YP_961938.1 120597364 4657702 complement(580663..581316) 1 NC_008750.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 581316 4657702 Sputw3181_0533 Shewanella sp. W3-18-1 2-deoxyglucose-6-phosphatase YP_961938.1 580663 R 351745 CDS YP_961939.1 120597365 4657925 581752..584349 1 NC_008750.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 584349 4657925 Sputw3181_0534 Shewanella sp. W3-18-1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_961939.1 581752 D 351745 CDS YP_961940.1 120597366 4657874 complement(584428..584925) 1 NC_008750.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 584925 4657874 Sputw3181_0535 Shewanella sp. W3-18-1 anti-RNA polymerase sigma 70 factor YP_961940.1 584428 R 351745 CDS YP_961941.1 120597367 4657671 584986..585390 1 NC_008750.1 hypothetical protein 585390 4657671 Sputw3181_0536 Shewanella sp. W3-18-1 hypothetical protein YP_961941.1 584986 D 351745 CDS YP_961942.1 120597368 4657762 585371..586435 1 NC_008750.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 586435 hemE 4657762 hemE Shewanella sp. W3-18-1 uroporphyrinogen decarboxylase YP_961942.1 585371 D 351745 CDS YP_961943.1 120597369 4661882 586748..589327 1 NC_008750.1 KEGG: son:SO0437 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 589327 4661882 Sputw3181_0538 Shewanella sp. W3-18-1 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_961943.1 586748 D 351745 CDS YP_961944.1 120597370 4661881 589404..590207 1 NC_008750.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_3588 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 590207 4661881 Sputw3181_0539 Shewanella sp. W3-18-1 short chain dehydrogenase YP_961944.1 589404 D 351745 CDS YP_961945.1 120597371 4661880 complement(590211..590438) 1 NC_008750.1 KEGG: shm:Shewmr7_3587 hypothetical protein; hypothetical protein 590438 4661880 Sputw3181_0540 Shewanella sp. W3-18-1 hypothetical protein YP_961945.1 590211 R 351745 CDS YP_961946.1 120597372 4661341 complement(590622..591920) 1 NC_008750.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 591920 4661341 Sputw3181_0541 Shewanella sp. W3-18-1 phosphoribosylamine--glycine ligase YP_961946.1 590622 R 351745 CDS YP_961947.1 120597373 4661498 complement(591991..593622) 1 NC_008750.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 593622 purH 4661498 purH Shewanella sp. W3-18-1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_961947.1 591991 R 351745 CDS YP_961948.1 120597374 4657801 593960..594430 1 NC_008750.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 594430 zntR 4657801 zntR Shewanella sp. W3-18-1 zinc-responsive transcriptional regulator YP_961948.1 593960 D 351745 CDS YP_961949.1 120597375 4657814 594433..595920 1 NC_008750.1 PFAM: permease; KEGG: son:SO0444 hypothetical protein; permease 595920 4657814 Sputw3181_0544 Shewanella sp. W3-18-1 permease YP_961949.1 594433 D 351745 CDS YP_961950.1 120597376 4657855 complement(596039..596926) 1 NC_008750.1 PFAM: band 7 protein; KEGG: shm:Shewmr7_3581 band 7 protein; hypothetical protein 596926 4657855 Sputw3181_0545 Shewanella sp. W3-18-1 hypothetical protein YP_961950.1 596039 R 351745 CDS YP_961951.1 120597377 4657863 597328..597585 1 NC_008750.1 KEGG: son:SO0447 hypothetical protein; hypothetical protein 597585 4657863 Sputw3181_0546 Shewanella sp. W3-18-1 hypothetical protein YP_961951.1 597328 D 351745 CDS YP_961952.1 120597378 4657880 597589..597879 1 NC_008750.1 KEGG: son:SO0448 hypothetical protein; hypothetical protein 597879 4657880 Sputw3181_0547 Shewanella sp. W3-18-1 hypothetical protein YP_961952.1 597589 D 351745 CDS YP_961953.1 120597379 4657904 597885..599510 1 NC_008750.1 PFAM: PepSY-associated TM helix domain protein; KEGG: shm:Shewmr7_3578 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein 599510 4657904 Sputw3181_0548 Shewanella sp. W3-18-1 PepSY-associated TM helix domain-containing protein YP_961953.1 597885 D 351745 CDS YP_961954.1 120597380 4657947 complement(599587..600753) 1 NC_008750.1 PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_0452 major facilitator superfamily MFS_1; major facilitator superfamily transporter 600753 4657947 Sputw3181_0549 Shewanella sp. W3-18-1 major facilitator superfamily transporter YP_961954.1 599587 R 351745 CDS YP_961955.1 120597381 4657968 601346..602746 1 NC_008750.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: she:Shewmr4_0455 anion transporter; anion transporter 602746 4657968 Sputw3181_0550 Shewanella sp. W3-18-1 anion transporter YP_961955.1 601346 D 351745 CDS YP_961956.1 120597382 4657990 complement(602825..603361) 1 NC_008750.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0452 thioredoxin 2; thioredoxin 603361 4657990 Sputw3181_0551 Shewanella sp. W3-18-1 thioredoxin YP_961956.1 602825 R 351745 CDS YP_961957.1 120597383 4657991 603486..603821 1 NC_008750.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO0453 peptidyl-prolyl cis-trans isomerase FkbP; peptidylprolyl isomerase, FKBP-type 603821 4657991 Sputw3181_0552 Shewanella sp. W3-18-1 peptidylprolyl isomerase, FKBP-type YP_961957.1 603486 D 351745 CDS YP_961958.1 120597384 4658020 603985..604959 1 NC_008750.1 KEGG: she:Shewmr4_0458 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 604959 4658020 Sputw3181_0553 Shewanella sp. W3-18-1 PAS/PAC sensor-containing diguanylate cyclase YP_961958.1 603985 D 351745 CDS YP_961959.1 120597385 4658027 605281..605496 1 NC_008750.1 hypothetical protein 605496 4658027 Sputw3181_0554 Shewanella sp. W3-18-1 hypothetical protein YP_961959.1 605281 D 351745 CDS YP_961960.1 120597386 4658031 complement(605830..606180) 1 NC_008750.1 KEGG: shm:Shewmr7_2786 hypothetical protein; hypothetical protein 606180 4658031 Sputw3181_0555 Shewanella sp. W3-18-1 hypothetical protein YP_961960.1 605830 R 351745 CDS YP_961961.1 120597387 4658032 complement(606249..607916) 1 NC_008750.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sfr:Sfri_3694 twin-arginine translocation pathway signal; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 607916 4658032 Sputw3181_0556 Shewanella sp. W3-18-1 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_961961.1 606249 R 351745 CDS YP_961962.1 120597388 4658080 complement(608471..610207) 1 NC_008750.1 PFAM: Tannase and feruloyl esterase; KEGG: sfr:Sfri_3696 feruloyl esterase; tannase and feruloyl esterase 610207 4658080 Sputw3181_0557 Shewanella sp. W3-18-1 tannase and feruloyl esterase YP_961962.1 608471 R 351745 CDS YP_961963.1 120597389 4658090 complement(610347..611585) 1 NC_008750.1 PFAM: outer membrane porin; KEGG: shm:Shewmr7_2788 outer membrane porin; outer membrane porin 611585 4658090 Sputw3181_0558 Shewanella sp. W3-18-1 outer membrane porin YP_961963.1 610347 R 351745 CDS YP_961964.1 120597390 4658122 611869..612588 1 NC_008750.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: shm:Shewmr7_2789 regulatory protein GntR, HTH; regulatory protein GntR 612588 4658122 Sputw3181_0559 Shewanella sp. W3-18-1 regulatory protein GntR YP_961964.1 611869 D 351745 CDS YP_961965.1 120597391 4658175 complement(612681..613070) 1 NC_008750.1 KEGG: she:Shewmr4_0459 hypothetical protein; hypothetical protein 613070 4658175 Sputw3181_0560 Shewanella sp. W3-18-1 hypothetical protein YP_961965.1 612681 R 351745 CDS YP_961966.1 120597392 4657743 complement(613116..615149) 1 NC_008750.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: she:Shewmr4_0460 TRAP transporter, 4TM/12TM fusion protein; TRAP transporter, 4TM/12TM fusion protein 615149 4657743 Sputw3181_0561 Shewanella sp. W3-18-1 TRAP transporter, 4TM/12TM fusion protein YP_961966.1 613116 R 351745 CDS YP_961967.1 120597393 4658263 complement(615253..616209) 1 NC_008750.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: she:Shewmr4_0461 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein 616209 4658263 Sputw3181_0562 Shewanella sp. W3-18-1 TRAP transporter solute receptor TAXI family protein YP_961967.1 615253 R 351745 CDS YP_961968.1 120597394 4658277 complement(616448..616570) 1 NC_008750.1 KEGG: shm:Shewmr7_3567 hypothetical protein; hypothetical protein 616570 4658277 Sputw3181_0563 Shewanella sp. W3-18-1 hypothetical protein YP_961968.1 616448 R 351745 CDS YP_961969.1 120597395 4657755 complement(616885..618375) 1 NC_008750.1 PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: shm:Shewmr7_3566 protein of unknown function DUF853, NPT hydrolase putative; hypothetical protein 618375 4657755 Sputw3181_0564 Shewanella sp. W3-18-1 hypothetical protein YP_961969.1 616885 R 351745 CDS YP_961970.1 120597396 4658301 618772..619209 1 NC_008750.1 PFAM: NUDIX hydrolase; KEGG: son:SO0464 MutT/nudix family protein; NUDIX hydrolase 619209 4658301 Sputw3181_0565 Shewanella sp. W3-18-1 NUDIX hydrolase YP_961970.1 618772 D 351745 CDS YP_961971.1 120597397 4658316 complement(619235..620434) 1 NC_008750.1 KEGG: psb:Psyr_3988 hypothetical protein; hypothetical protein 620434 4658316 Sputw3181_0566 Shewanella sp. W3-18-1 hypothetical protein YP_961971.1 619235 R 351745 CDS YP_961972.1 120597398 4658390 complement(621032..622054) 1 NC_008750.1 PFAM: glycosyl transferase, family 51; KEGG: bja:bll0910 penicillin-binding protein; glycosyl transferase family protein 622054 4658390 Sputw3181_0567 Shewanella sp. W3-18-1 glycosyl transferase family protein YP_961972.1 621032 R 351745 CDS YP_961973.1 120597399 4661174 623046..625214 1 NC_008750.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 625214 uvrD 4661174 uvrD Shewanella sp. W3-18-1 DNA-dependent helicase II YP_961973.1 623046 D 351745 CDS YP_961974.1 120597400 4658651 625360..626220 1 NC_008750.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 626220 ubiA 4658651 ubiA Shewanella sp. W3-18-1 4-hydroxybenzoate octaprenyltransferase YP_961974.1 625360 D 351745 CDS YP_961975.1 120597401 4658710 626303..627367 1 NC_008750.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: she:Shewmr4_0476 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 627367 4658710 Sputw3181_0570 Shewanella sp. W3-18-1 2-nitropropane dioxygenase YP_961975.1 626303 D 351745 CDS YP_961976.1 120597402 4658758 627438..628520 1 NC_008750.1 PFAM: protein of unknown function UPF0118; KEGG: she:Shewmr4_0479 protein of unknown function UPF0118; hypothetical protein 628520 4658758 Sputw3181_0571 Shewanella sp. W3-18-1 hypothetical protein YP_961976.1 627438 D 351745 CDS YP_961977.1 120597403 4658768 complement(628524..628814) 1 NC_008750.1 KEGG: shm:Shewmr7_3550 putative mitomycin resistance protein; putative mitomycin resistance protein 628814 4658768 Sputw3181_0572 Shewanella sp. W3-18-1 putative mitomycin resistance protein YP_961977.1 628524 R 351745 CDS YP_961978.1 120597404 4658769 complement(628880..629458) 1 NC_008750.1 KEGG: son:SO0474 hypothetical protein; hypothetical protein 629458 4658769 Sputw3181_0573 Shewanella sp. W3-18-1 hypothetical protein YP_961978.1 628880 R 351745 CDS YP_961979.1 120597405 4658792 complement(629634..630218) 1 NC_008750.1 PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_3545 redoxin domain protein; redoxin domain-containing protein 630218 4658792 Sputw3181_0574 Shewanella sp. W3-18-1 redoxin domain-containing protein YP_961979.1 629634 R 351745 CDS YP_961980.1 120597406 4658825 complement(630235..630654) 1 NC_008750.1 PFAM: cytochrome C biogenesis protein; KEGG: shm:Shewmr7_3544 cytochrome c biogenesis protein; cytochrome C biogenesis protein 630654 4658825 Sputw3181_0575 Shewanella sp. W3-18-1 cytochrome C biogenesis protein YP_961980.1 630235 R 351745 CDS YP_961981.1 120597407 4658829 complement(630654..632783) 1 NC_008750.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO0478 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 632783 4658829 Sputw3181_0576 Shewanella sp. W3-18-1 cytochrome c-type biogenesis protein CcmF YP_961981.1 630654 R 351745 CDS YP_961982.1 120597408 4658834 633328..635457 1 NC_008750.1 KEGG: she:Shewmr4_0488 cytochrome c, putative; cytochrome c 635457 4658834 Sputw3181_0577 Shewanella sp. W3-18-1 cytochrome c YP_961982.1 633328 D 351745 CDS YP_961983.1 120597409 4658835 635520..635960 1 NC_008750.1 SMART: Rhodanese domain protein; KEGG: shm:Shewmr7_3541 rhodanese domain protein; rhodanese domain-containing protein 635960 4658835 Sputw3181_0578 Shewanella sp. W3-18-1 rhodanese domain-containing protein YP_961983.1 635520 D 351745 CDS YP_961984.1 120597410 4658851 636046..636828 1 NC_008750.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: she:Shewmr4_0490 FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type 636828 4658851 Sputw3181_0579 Shewanella sp. W3-18-1 peptidylprolyl isomerase, FKBP-type YP_961984.1 636046 D 351745 CDS YP_961985.1 120597411 4658884 636863..637543 1 NC_008750.1 KEGG: son:SO0482 formate-dependent nitrite reductase, NrfG protein; formate-dependent nitrite reductase complex subunit NrfG 637543 4658884 Sputw3181_0580 Shewanella sp. W3-18-1 formate-dependent nitrite reductase complex subunit NrfG YP_961985.1 636863 D 351745 CDS YP_961986.1 120597412 4658911 637632..638123 1 NC_008750.1 PFAM: NosL family protein; KEGG: son:SO0485 NosL protein; NosL family protein 638123 4658911 Sputw3181_0581 Shewanella sp. W3-18-1 NosL family protein YP_961986.1 637632 D 351745 CDS YP_961987.1 120597413 4658620 638128..639423 1 NC_008750.1 PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: son:SO0486 copper ABC transporter, periplasmic copper-binding protein; periplasmic copper-binding protein 639423 4658620 Sputw3181_0582 Shewanella sp. W3-18-1 periplasmic copper-binding protein YP_961987.1 638128 D 351745 CDS YP_961988.1 120597414 4658925 639420..640454 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0487 copper ABC transporter, ATP-binding protein; ABC transporter-like protein 640454 4658925 Sputw3181_0583 Shewanella sp. W3-18-1 ABC transporter-like protein YP_961988.1 639420 D 351745 CDS YP_961989.1 120597415 4658952 640451..641329 1 NC_008750.1 KEGG: son:SO0488 copper ABC transporter, permease protein; copper ABC transporter permease 641329 4658952 Sputw3181_0584 Shewanella sp. W3-18-1 copper ABC transporter permease YP_961989.1 640451 D 351745 CDS YP_961990.1 120597416 4658591 641551..642834 1 NC_008750.1 PFAM: transcriptional regulator domain protein; KEGG: shm:Shewmr7_3532 transcriptional regulator, CadC; transcriptional regulator CadC 642834 4658591 Sputw3181_0585 Shewanella sp. W3-18-1 transcriptional regulator CadC YP_961990.1 641551 D 351745 CDS YP_961991.1 120597417 4659165 642852..643484 1 NC_008750.1 KEGG: she:Shewmr4_0502 conserved hypothetical flavoprotein oxygenase; flavoprotein oxygenase 643484 4659165 Sputw3181_0586 Shewanella sp. W3-18-1 flavoprotein oxygenase YP_961991.1 642852 D 351745 CDS YP_961992.1 120597418 4659170 644216..645322 1 NC_008750.1 hypothetical protein 645322 4659170 Sputw3181_0587 Shewanella sp. W3-18-1 hypothetical protein YP_961992.1 644216 D 351745 CDS YP_961993.1 120597419 4659188 complement(646060..646758) 1 NC_008750.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 646758 fre 4659188 fre Shewanella sp. W3-18-1 FMN reductase YP_961993.1 646060 R 351745 CDS YP_961994.1 120597420 4659192 complement(646871..648352) 1 NC_008750.1 TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: shm:Shewmr7_3525 UbiD family decarboxylases; UbiD family decarboxylase 648352 4659192 Sputw3181_0589 Shewanella sp. W3-18-1 UbiD family decarboxylase YP_961994.1 646871 R 351745 CDS YP_961995.1 120597421 4659198 648512..649288 1 NC_008750.1 KEGG: she:Shewmr4_0507 hypothetical protein; hypothetical protein 649288 4659198 Sputw3181_0590 Shewanella sp. W3-18-1 hypothetical protein YP_961995.1 648512 D 351745 CDS YP_961996.1 120597422 4659202 649755..650429 1 NC_008750.1 hypothetical protein 650429 4659202 Sputw3181_0591 Shewanella sp. W3-18-1 hypothetical protein YP_961996.1 649755 D 351745 CDS YP_961997.1 120597423 4658974 complement(650492..651169) 1 NC_008750.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: shm:Shewmr7_3522 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 651169 4658974 Sputw3181_0592 Shewanella sp. W3-18-1 short-chain dehydrogenase/reductase SDR YP_961997.1 650492 R 351745 CDS YP_961998.1 120597424 4659222 complement(651224..651658) 1 NC_008750.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 651658 4659222 Sputw3181_0593 Shewanella sp. W3-18-1 3-dehydroquinate dehydratase YP_961998.1 651224 R 351745 CDS YP_961999.1 120597425 4659232 complement(651777..652208) 1 NC_008750.1 PFAM: Class I peptide chain release factor; KEGG: son:SO0513 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein 652208 4659232 Sputw3181_0594 Shewanella sp. W3-18-1 peptidyl-tRNA hydrolase domain-containing protein YP_961999.1 651777 R 351745 CDS YP_962000.1 120597426 4659076 652345..652710 1 NC_008750.1 KEGG: son:SO0514 hypothetical protein; hypothetical protein 652710 4659076 Sputw3181_0595 Shewanella sp. W3-18-1 hypothetical protein YP_962000.1 652345 D 351745 CDS YP_962001.1 120597427 4659286 652747..652953 1 NC_008750.1 KEGG: shm:Shewmr7_3517 hypothetical protein; hypothetical protein 652953 4659286 Sputw3181_0596 Shewanella sp. W3-18-1 hypothetical protein YP_962001.1 652747 D 351745 CDS YP_962002.1 120597428 4659295 653096..653539 1 NC_008750.1 KEGG: she:Shewmr4_0515 hypothetical protein; hypothetical protein 653539 4659295 Sputw3181_0597 Shewanella sp. W3-18-1 hypothetical protein YP_962002.1 653096 D 351745 CDS YP_962003.1 120597429 4659321 653870..655363 1 NC_008750.1 KEGG: shm:Shewmr7_3515 outer membrane efflux protein; outer membrane efflux protein 655363 4659321 Sputw3181_0598 Shewanella sp. W3-18-1 outer membrane efflux protein YP_962003.1 653870 D 351745 CDS YP_962004.1 120597430 4659324 655374..656639 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO0519 cation efflux protein, putative; RND family efflux transporter MFP subunit 656639 4659324 Sputw3181_0599 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_962004.1 655374 D 351745 CDS YP_962005.1 120597431 4659429 656669..659896 1 NC_008750.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3513 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 659896 4659429 Sputw3181_0600 Shewanella sp. W3-18-1 CzcA family heavy metal efflux protein YP_962005.1 656669 D 351745 CDS YP_962006.1 120597432 4659443 660057..660380 1 NC_008750.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0521 hypothetical protein; antibiotic biosynthesis monooxygenase 660380 4659443 Sputw3181_0601 Shewanella sp. W3-18-1 antibiotic biosynthesis monooxygenase YP_962006.1 660057 D 351745 CDS YP_962007.1 120597433 4659145 complement(660458..660868) 1 NC_008750.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 660868 mscL 4659145 mscL Shewanella sp. W3-18-1 large-conductance mechanosensitive channel YP_962007.1 660458 R 351745 CDS YP_962008.1 120597434 4659501 661067..661522 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_0525 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 661522 4659501 Sputw3181_0603 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_962008.1 661067 D 351745 CDS YP_962009.1 120597435 4659510 661596..661922 1 NC_008750.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0527 hypothetical protein; antibiotic biosynthesis monooxygenase 661922 4659510 Sputw3181_0604 Shewanella sp. W3-18-1 antibiotic biosynthesis monooxygenase YP_962009.1 661596 D 351745 CDS YP_962010.1 120597436 4659152 662242..662499 1 NC_008750.1 KEGG: shm:Shewmr7_3496 redox-active disulfide protein 2; redox-active disulfide protein 2 662499 4659152 Sputw3181_0605 Shewanella sp. W3-18-1 redox-active disulfide protein 2 YP_962010.1 662242 D 351745 CDS YP_962011.1 120597437 4659637 662532..663377 1 NC_008750.1 KEGG: son:SO0540 hypothetical protein; hypothetical protein 663377 4659637 Sputw3181_0606 Shewanella sp. W3-18-1 hypothetical protein YP_962011.1 662532 D 351745 CDS YP_962012.1 120597438 4659853 663502..664938 1 NC_008750.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: son:SO0541 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 664938 4659853 Sputw3181_0607 Shewanella sp. W3-18-1 beta-lactamase domain-containing protein YP_962012.1 663502 D 351745 CDS YP_962013.1 120597439 4659866 665185..666561 1 NC_008750.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: sdn:Sden_0649 amino acid carrier protein; amino acid carrier protein 666561 4659866 Sputw3181_0608 Shewanella sp. W3-18-1 amino acid carrier protein YP_962013.1 665185 D 351745 CDS YP_962014.1 120597440 4659684 complement(666637..667992) 1 NC_008750.1 PFAM: protein of unknown function DUF1704; KEGG: son:SO0542 hypothetical protein; hypothetical protein 667992 4659684 Sputw3181_0609 Shewanella sp. W3-18-1 hypothetical protein YP_962014.1 666637 R 351745 CDS YP_962015.1 120597441 4659880 complement(668394..668570) 1 NC_008750.1 KEGG: shm:Shewmr7_3488 hypothetical protein; hypothetical protein 668570 4659880 Sputw3181_0610 Shewanella sp. W3-18-1 hypothetical protein YP_962015.1 668394 R 351745 CDS YP_962016.1 120597442 4659885 668879..671032 1 NC_008750.1 KEGG: she:Shewmr4_0543 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 671032 4659885 Sputw3181_0611 Shewanella sp. W3-18-1 multi-sensor signal transduction histidine kinase YP_962016.1 668879 D 351745 CDS YP_962017.1 120597443 4659887 671029..671463 1 NC_008750.1 PFAM: response regulator receiver; KEGG: she:Shewmr4_0544 response regulator receiver protein; response regulator receiver protein 671463 4659887 Sputw3181_0612 Shewanella sp. W3-18-1 response regulator receiver protein YP_962017.1 671029 D 351745 CDS YP_962018.1 120597444 4659906 671473..673194 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: son:SO0545 response regulator; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 673194 4659906 Sputw3181_0613 Shewanella sp. W3-18-1 response regulator receiver modulated diguanylate cyclase/phosphodiesterase YP_962018.1 671473 D 351745 CDS YP_962019.1 120597445 4659617 673355..674260 1 NC_008750.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO0546 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 674260 4659617 Sputw3181_0614 Shewanella sp. W3-18-1 alpha-L-glutamate ligase YP_962019.1 673355 D 351745 CDS YP_962020.1 120597446 4659597 complement(674341..675033) 1 NC_008750.1 KEGG: she:Shewmr4_0547 hypothetical protein; hypothetical protein 675033 4659597 Sputw3181_0615 Shewanella sp. W3-18-1 hypothetical protein YP_962020.1 674341 R 351745 CDS YP_962021.1 120597447 4659949 complement(675331..675603) 1 NC_008750.1 PFAM: histone family protein DNA-binding protein; KEGG: she:Shewmr4_0548 histone family protein DNA-binding protein; histone family protein DNA-binding protein 675603 4659949 Sputw3181_0616 Shewanella sp. W3-18-1 histone family protein DNA-binding protein YP_962021.1 675331 R 351745 CDS YP_962022.1 120597448 4659959 complement(675750..676547) 1 NC_008750.1 PFAM: response regulator receiver; KEGG: shm:Shewmr7_3481 response regulator receiver protein; response regulator receiver protein 676547 4659959 Sputw3181_0617 Shewanella sp. W3-18-1 response regulator receiver protein YP_962022.1 675750 R 351745 CDS YP_962023.1 120597449 4659976 complement(676630..677094) 1 NC_008750.1 KEGG: son:SO0550 hypothetical protein; hypothetical protein 677094 4659976 Sputw3181_0618 Shewanella sp. W3-18-1 hypothetical protein YP_962023.1 676630 R 351745 CDS YP_962024.1 120597450 4659980 677139..677648 1 NC_008750.1 KEGG: shm:Shewmr7_3479 hypothetical protein; hypothetical protein 677648 4659980 Sputw3181_0619 Shewanella sp. W3-18-1 hypothetical protein YP_962024.1 677139 D 351745 CDS YP_962025.1 120597451 4659997 complement(677680..677988) 1 NC_008750.1 KEGG: shm:Shewmr7_3477 hypothetical protein; hypothetical protein 677988 4659997 Sputw3181_0620 Shewanella sp. W3-18-1 hypothetical protein YP_962025.1 677680 R 351745 CDS YP_962026.1 120597452 4660011 678261..678785 1 NC_008750.1 KEGG: shm:Shewmr7_3476 hypothetical protein; hypothetical protein 678785 4660011 Sputw3181_0621 Shewanella sp. W3-18-1 hypothetical protein YP_962026.1 678261 D 351745 CDS YP_962027.1 120597453 4660049 complement(678799..680553) 1 NC_008750.1 PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: shm:Shewmr7_3475 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 680553 4660049 Sputw3181_0622 Shewanella sp. W3-18-1 diguanylate cyclase/phosphodiesterase YP_962027.1 678799 R 351745 CDS YP_962028.1 120597454 4660078 complement(680717..681025) 1 NC_008750.1 KEGG: shm:Shewmr7_3474 hypothetical protein; hypothetical protein 681025 4660078 Sputw3181_0623 Shewanella sp. W3-18-1 hypothetical protein YP_962028.1 680717 R 351745 CDS YP_962029.1 120597455 4659843 681074..681973 1 NC_008750.1 PFAM: GumN family protein; KEGG: son:SO0557 hypothetical protein; GumN family protein 681973 4659843 Sputw3181_0624 Shewanella sp. W3-18-1 GumN family protein YP_962029.1 681074 D 351745 CDS YP_962030.1 120597456 4660146 complement(681998..682771) 1 NC_008750.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0558 smtA protein; type 11 methyltransferase 682771 4660146 Sputw3181_0625 Shewanella sp. W3-18-1 type 11 methyltransferase YP_962030.1 681998 R 351745 CDS YP_962031.1 120597457 4660153 683180..684010 1 NC_008750.1 PFAM: MaoC domain protein dehydratase; KEGG: son:SO0559 MaoC domain protein; dehydratase 684010 4660153 Sputw3181_0626 Shewanella sp. W3-18-1 dehydratase YP_962031.1 683180 D 351745 CDS YP_962032.1 120597458 4660169 684185..685897 1 NC_008750.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 685897 4660169 Sputw3181_0627 Shewanella sp. W3-18-1 formate--tetrahydrofolate ligase YP_962032.1 684185 D 351745 CDS YP_962033.1 120597459 4657769 complement(686063..686239) 1 NC_008750.1 KEGG: she:Shewmr4_0564 hypothetical protein; hypothetical protein 686239 4657769 Sputw3181_0628 Shewanella sp. W3-18-1 hypothetical protein YP_962033.1 686063 R 351745 CDS YP_962034.1 120597460 4660990 686502..686765 1 NC_008750.1 KEGG: shm:Shewmr7_3465 hypothetical protein; hypothetical protein 686765 4660990 Sputw3181_0629 Shewanella sp. W3-18-1 hypothetical protein YP_962034.1 686502 D 351745 CDS YP_962035.1 120597461 4660962 686843..688033 1 NC_008750.1 KEGG: shm:Shewmr7_3464 hypothetical protein; hypothetical protein 688033 4660962 Sputw3181_0630 Shewanella sp. W3-18-1 hypothetical protein YP_962035.1 686843 D 351745 CDS YP_962036.1 120597462 4660458 688017..688925 1 NC_008750.1 PFAM: periplasmic solute binding protein; KEGG: shm:Shewmr7_3463 periplasmic solute binding protein; periplasmic solute binding protein 688925 4660458 Sputw3181_0631 Shewanella sp. W3-18-1 periplasmic solute binding protein YP_962036.1 688017 D 351745 CDS YP_962037.1 120597463 4660536 688931..689719 1 NC_008750.1 PFAM: ABC-3 protein; KEGG: shm:Shewmr7_3462 ABC-3 protein; ABC-3 protein 689719 4660536 Sputw3181_0632 Shewanella sp. W3-18-1 ABC-3 protein YP_962037.1 688931 D 351745 CDS YP_962038.1 120597464 4660549 689829..690614 1 NC_008750.1 KEGG: she:Shewmr4_0569 1-acyl-sn-glycerol-3-phosphate acyltransferases; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 690614 4660549 Sputw3181_0633 Shewanella sp. W3-18-1 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_962038.1 689829 D 351745 CDS YP_962039.1 120597465 4660606 690658..691062 1 NC_008750.1 PFAM: protein of unknown function DUF1260; KEGG: shm:Shewmr7_3460 protein of unknown function DUF1260; hypothetical protein 691062 4660606 Sputw3181_0634 Shewanella sp. W3-18-1 hypothetical protein YP_962039.1 690658 D 351745 CDS YP_962040.1 120597466 4660619 complement(691132..692106) 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_3459 diguanylate cyclase; diguanylate cyclase 692106 4660619 Sputw3181_0635 Shewanella sp. W3-18-1 diguanylate cyclase YP_962040.1 691132 R 351745 CDS YP_962041.1 120597467 4660622 complement(692125..693120) 1 NC_008750.1 PFAM: response regulator receiver; KEGG: son:SO0570 response regulator; CheC, inhibitor of MCP methylation 693120 4660622 Sputw3181_0636 Shewanella sp. W3-18-1 CheC, inhibitor of MCP methylation YP_962041.1 692125 R 351745 CDS YP_962042.1 120597468 4660648 693639..694445 1 NC_008750.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 694445 4660648 Sputw3181_0637 Shewanella sp. W3-18-1 enoyl-CoA hydratase YP_962042.1 693639 D 351745 CDS YP_962043.1 120597469 4660656 complement(694504..695388) 1 NC_008750.1 KEGG: son:SO0573 hypothetical protein; hypothetical protein 695388 4660656 Sputw3181_0638 Shewanella sp. W3-18-1 hypothetical protein YP_962043.1 694504 R 351745 CDS YP_962044.1 120597470 4660661 complement(695558..698464) 1 NC_008750.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 698464 4660661 Sputw3181_0639 Shewanella sp. W3-18-1 ATP-dependent helicase HepA YP_962044.1 695558 R 351745 CDS YP_962045.1 120597471 4660667 698867..700261 1 NC_008750.1 PFAM: PhoH family protein; SMART: AAA ATPase; Nucleotide binding protein, PINc; KEGG: shm:Shewmr7_3454 PhoH family protein; PhoH family protein 700261 4660667 Sputw3181_0640 Shewanella sp. W3-18-1 PhoH family protein YP_962045.1 698867 D 351745 CDS YP_962046.1 120597472 4660723 700473..704177 1 NC_008750.1 KEGG: she:Shewmr4_0577 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Cache domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 704177 4660723 Sputw3181_0641 Shewanella sp. W3-18-1 multi-sensor hybrid histidine kinase YP_962046.1 700473 D 351745 CDS YP_962047.1 120597473 4660784 704246..706648 1 NC_008750.1 KEGG: son:SO0578 hypothetical protein; hypothetical protein 706648 4660784 Sputw3181_0642 Shewanella sp. W3-18-1 hypothetical protein YP_962047.1 704246 D 351745 CDS YP_962048.1 120597474 4660816 complement(706677..708485) 1 NC_008750.1 PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: shm:Shewmr7_3451 serine/threonine protein kinase; protein kinase 708485 4660816 Sputw3181_0643 Shewanella sp. W3-18-1 protein kinase YP_962048.1 706677 R 351745 CDS YP_962049.1 120597475 4660861 708734..709075 1 NC_008750.1 KEGG: she:Shewmr4_0580 hypothetical protein; hypothetical protein 709075 4660861 Sputw3181_0644 Shewanella sp. W3-18-1 hypothetical protein YP_962049.1 708734 D 351745 CDS YP_962050.1 120597476 4660418 709179..709835 1 NC_008750.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 709835 4660418 Sputw3181_0645 Shewanella sp. W3-18-1 thiopurine S-methyltransferase YP_962050.1 709179 D 351745 CDS YP_962051.1 120597477 4661664 complement(710090..710281) 1 NC_008750.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: she:Shewmr4_0582 BFD domain protein (2Fe-2S)-binding domain protein; BFD/(2Fe-2S)-binding domain-containing protein 710281 4661664 Sputw3181_0646 Shewanella sp. W3-18-1 BFD/(2Fe-2S)-binding domain-containing protein YP_962051.1 710090 R 351745 CDS YP_962052.1 120597478 4661835 710532..712106 1 NC_008750.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: shm:Shewmr7_3447 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer 712106 4661835 Sputw3181_0647 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_962052.1 710532 D 351745 CDS YP_962053.1 120597479 4661486 712503..712838 1 NC_008750.1 KEGG: shm:Shewmr7_3445 hypothetical protein; hypothetical protein 712838 4661486 Sputw3181_0648 Shewanella sp. W3-18-1 hypothetical protein YP_962053.1 712503 D 351745 CDS YP_962054.1 120597480 4661177 complement(712854..713576) 1 NC_008750.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: shm:Shewmr7_3444 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 713576 4661177 Sputw3181_0649 Shewanella sp. W3-18-1 glycerophosphoryl diester phosphodiesterase YP_962054.1 712854 R 351745 CDS YP_962055.1 120597481 4661088 complement(713591..716797) 1 NC_008750.1 PFAM: MscS Mechanosensitive ion channel; KEGG: she:Shewmr4_0587 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 716797 4661088 Sputw3181_0650 Shewanella sp. W3-18-1 mechanosensitive ion channel protein MscS YP_962055.1 713591 R 351745 CDS YP_962056.1 120597482 4661164 complement(716867..717751) 1 NC_008750.1 PFAM: protein of unknown function DUF6, transmembrane; UAA transporter; KEGG: shm:Shewmr7_3442 protein of unknown function DUF6, transmembrane; hypothetical protein 717751 4661164 Sputw3181_0651 Shewanella sp. W3-18-1 hypothetical protein YP_962056.1 716867 R 351745 CDS YP_962057.1 120597483 4661092 complement(717767..718636) 1 NC_008750.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 718636 psd 4661092 psd Shewanella sp. W3-18-1 phosphatidylserine decarboxylase YP_962057.1 717767 R 351745 CDS YP_962058.1 120597484 4661123 complement(718705..719769) 1 NC_008750.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 719769 4661123 Sputw3181_0653 Shewanella sp. W3-18-1 ribosome-associated GTPase YP_962058.1 718705 R 351745 CDS YP_962059.1 120597485 4661093 719882..720427 1 NC_008750.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 720427 4661093 Sputw3181_0654 Shewanella sp. W3-18-1 oligoribonuclease YP_962059.1 719882 D 351745 CDS YP_962060.1 120597486 4659074 721977..722432 1 NC_008750.1 KEGG: shm:Shewmr7_3438 hypothetical protein; hypothetical protein 722432 4659074 Sputw3181_0655 Shewanella sp. W3-18-1 hypothetical protein YP_962060.1 721977 D 351745 CDS YP_962061.1 120597487 4661110 722726..724225 1 NC_008750.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: she:Shewmr4_0593 carbohydrate kinase, YjeF related protein; carbohydrate kinase 724225 4661110 Sputw3181_0656 Shewanella sp. W3-18-1 carbohydrate kinase YP_962061.1 722726 D 351745 CDS YP_962062.1 120597488 4661084 724314..724772 1 NC_008750.1 PFAM: protein of unknown function UPF0079; KEGG: son:SO0599 conserved hypothetical protein TIGR00150; hypothetical protein 724772 4661084 Sputw3181_0657 Shewanella sp. W3-18-1 hypothetical protein YP_962062.1 724314 D 351745 CDS YP_962063.1 120597489 4661079 724781..726211 1 NC_008750.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: she:Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 726211 4661079 Sputw3181_0658 Shewanella sp. W3-18-1 N-acetylmuramoyl-L-alanine amidase YP_962063.1 724781 D 351745 CDS YP_962064.1 120597490 4661076 726213..728138 1 NC_008750.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 728138 mutL 4661076 mutL Shewanella sp. W3-18-1 DNA mismatch repair protein YP_962064.1 726213 D 351745 CDS YP_962065.1 120597491 4661065 728154..729068 1 NC_008750.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 729068 miaA 4661065 miaA Shewanella sp. W3-18-1 tRNA delta(2)-isopentenylpyrophosphate transferase YP_962065.1 728154 D 351745 CDS YP_962066.1 120597492 4660425 729159..729431 1 NC_008750.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: shm:Shewmr7_3432 RNA chaperone Hfq; RNA chaperone Hfq 729431 4660425 Sputw3181_0661 Shewanella sp. W3-18-1 RNA chaperone Hfq YP_962066.1 729159 D 351745 CDS YP_962067.1 120597493 4661022 729455..730762 1 NC_008750.1 PFAM: GTP-binding protein, HSR1-related; KEGG: son:SO0604 GTP-binding protein HflX; HSR1-like GTP-binding protein 730762 4661022 Sputw3181_0662 Shewanella sp. W3-18-1 HSR1-like GTP-binding protein YP_962067.1 729455 D 351745 CDS YP_962068.1 120597494 4660423 730799..731941 1 NC_008750.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: she:Shewmr4_0600 HflK protein; HflK protein 731941 4660423 Sputw3181_0663 Shewanella sp. W3-18-1 HflK protein YP_962068.1 730799 D 351745 CDS YP_962069.1 120597495 4661054 731945..732838 1 NC_008750.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: shm:Shewmr7_3429 HflC protein; HflC protein 732838 4661054 Sputw3181_0664 Shewanella sp. W3-18-1 HflC protein YP_962069.1 731945 D 351745 CDS YP_962070.1 120597496 4661842 733202..733792 1 NC_008750.1 KEGG: shm:Shewmr7_3428 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 733792 4661842 Sputw3181_0665 Shewanella sp. W3-18-1 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_962070.1 733202 D 351745 CDS YP_962071.1 120597497 4661859 733792..735006 1 NC_008750.1 PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; KEGG: son:SO0609 ubiquinol-cytochrome c reductase, cytochrome b; cytochrome b/b6 domain-containing protein 735006 4661859 Sputw3181_0666 Shewanella sp. W3-18-1 cytochrome b/b6 domain-containing protein YP_962071.1 733792 D 351745 CDS YP_962072.1 120597498 4661849 735006..735704 1 NC_008750.1 PFAM: cytochrome c1; KEGG: shm:Shewmr7_3426 cytochrome c1; cytochrome c1 735704 4661849 Sputw3181_0667 Shewanella sp. W3-18-1 cytochrome c1 YP_962072.1 735006 D 351745 CDS YP_962073.1 120597499 4661834 735801..736430 1 NC_008750.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 736430 sspA 4661834 sspA Shewanella sp. W3-18-1 stringent starvation protein A YP_962073.1 735801 D 351745 CDS YP_962074.1 120597500 4661747 736430..736867 1 NC_008750.1 PFAM: Stringent starvation protein B; KEGG: shm:Shewmr7_3424 stringent starvation protein B; ClpXP protease specificity-enhancing factor 736867 4661747 Sputw3181_0669 Shewanella sp. W3-18-1 ClpXP protease specificity-enhancing factor YP_962074.1 736430 D 351745 CDS YP_962075.1 120597501 4661815 737091..737627 1 NC_008750.1 KEGG: she:Shewmr4_3418 hypothetical protein; hypothetical protein 737627 4661815 Sputw3181_0670 Shewanella sp. W3-18-1 hypothetical protein YP_962075.1 737091 D 351745 CDS YP_962076.1 120597502 4661795 737791..739425 1 NC_008750.1 PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: cps:CPS_0756 sensory box sensor histidine kinase/DNA-binding response regulator, AraC family; response regulator receiver protein 739425 4661795 Sputw3181_0671 Shewanella sp. W3-18-1 response regulator receiver protein YP_962076.1 737791 D 351745 CDS YP_962077.1 120597503 4661809 complement(739403..740881) 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cvi:CV0964 hypothetical protein; diguanylate cyclase 740881 4661809 Sputw3181_0672 Shewanella sp. W3-18-1 diguanylate cyclase YP_962077.1 739403 R 351745 CDS YP_962078.1 120597504 4661808 741264..742541 1 NC_008750.1 KEGG: mhu:Mhun_1163 PKD; hypothetical protein 742541 4661808 Sputw3181_0673 Shewanella sp. W3-18-1 hypothetical protein YP_962078.1 741264 D 351745 CDS YP_962079.1 120597505 4661807 742544..745915 1 NC_008750.1 PFAM: PKD domain containing protein; protein of unknown function DUF1566; KEGG: pat:Patl_3292 protein of unknown function DUF1566; hypothetical protein 745915 4661807 Sputw3181_0674 Shewanella sp. W3-18-1 hypothetical protein YP_962079.1 742544 D 351745 CDS YP_962080.1 120597506 4661768 746049..746579 1 NC_008750.1 PFAM: protein of unknown function DUF1566; KEGG: pat:Patl_3291 protein of unknown function DUF1566; hypothetical protein 746579 4661768 Sputw3181_0675 Shewanella sp. W3-18-1 hypothetical protein YP_962080.1 746049 D 351745 CDS YP_962081.1 120597507 4661801 746899..747636 1 NC_008750.1 PFAM: protein of unknown function DUF1566; KEGG: pat:Patl_3291 protein of unknown function DUF1566; hypothetical protein 747636 4661801 Sputw3181_0676 Shewanella sp. W3-18-1 hypothetical protein YP_962081.1 746899 D 351745 CDS YP_962082.1 120597508 4661748 747709..748782 1 NC_008750.1 KEGG: wsu:WS1457 hypothetical protein; hypothetical protein 748782 4661748 Sputw3181_0677 Shewanella sp. W3-18-1 hypothetical protein YP_962082.1 747709 D 351745 CDS YP_962083.1 120597509 4661773 748770..749612 1 NC_008750.1 hypothetical protein 749612 4661773 Sputw3181_0678 Shewanella sp. W3-18-1 hypothetical protein YP_962083.1 748770 D 351745 CDS YP_962084.1 120597510 4661765 749741..752587 1 NC_008750.1 PFAM: peptidase M16 domain protein; KEGG: son:SO4022 peptidase, M16 family; peptidase M16 domain-containing protein 752587 4661765 Sputw3181_0679 Shewanella sp. W3-18-1 peptidase M16 domain-containing protein YP_962084.1 749741 D 351745 CDS YP_962085.1 120597511 4661761 752888..753310 1 NC_008750.1 KEGG: son:SO4020 transcriptional regulator, LysR family; LysR family transcriptional regulator 753310 4661761 Sputw3181_0680 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_962085.1 752888 D 351745 CDS YP_962086.1 120597512 4661760 753335..754033 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vfi:VFA0653 IAA acetyltransferase; N-acetyltransferase GCN5 754033 4661760 Sputw3181_0681 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_962086.1 753335 D 351745 CDS YP_962087.1 120597513 4661740 complement(754150..756864) 1 NC_008750.1 KEGG: son:SO4019 hypothetical protein; hypothetical protein 756864 4661740 Sputw3181_0682 Shewanella sp. W3-18-1 hypothetical protein YP_962087.1 754150 R 351745 CDS YP_962088.1 120597514 4661750 757238..758608 1 NC_008750.1 KEGG: she:Shewmr4_3415 hypothetical protein; hypothetical protein 758608 4661750 Sputw3181_0683 Shewanella sp. W3-18-1 hypothetical protein YP_962088.1 757238 D 351745 CDS YP_962089.1 120597515 4661733 complement(758691..760106) 1 NC_008750.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: son:SO4017 transglycosylase, Slt family; lytic transglycosylase, catalytic 760106 4661733 Sputw3181_0684 Shewanella sp. W3-18-1 lytic transglycosylase, catalytic YP_962089.1 758691 R 351745 CDS YP_962090.1 120597516 4661137 760293..761633 1 NC_008750.1 PFAM: protein kinase; leucine-rich repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein, typical subtype; KEGG: son:SO4016 hypothetical protein; protein kinase 761633 4661137 Sputw3181_0685 Shewanella sp. W3-18-1 protein kinase YP_962090.1 760293 D 351745 CDS YP_962091.1 120597517 4661728 761927..763093 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO4015 hypothetical protein; RND family efflux transporter MFP subunit 763093 4661728 Sputw3181_0686 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_962091.1 761927 D 351745 CDS YP_962092.1 120597518 4661722 763093..766191 1 NC_008750.1 PFAM: acriflavin resistance protein; KEGG: son:SO4014 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 766191 4661722 Sputw3181_0687 Shewanella sp. W3-18-1 acriflavin resistance protein YP_962092.1 763093 D 351745 CDS YP_962093.1 120597519 4661698 766404..768227 1 NC_008750.1 KEGG: son:SO4013 hypothetical protein; hypothetical protein 768227 4661698 Sputw3181_0688 Shewanella sp. W3-18-1 hypothetical protein YP_962093.1 766404 D 351745 CDS YP_962094.1 120597520 4661700 768438..769439 1 NC_008750.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0640 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase 769439 4661700 Sputw3181_0689 Shewanella sp. W3-18-1 alcohol dehydrogenase YP_962094.1 768438 D 351745 CDS YP_962095.1 120597521 4661050 769778..770182 1 NC_008750.1 KEGG: son:SO0691 hypothetical protein; hypothetical protein 770182 4661050 Sputw3181_0690 Shewanella sp. W3-18-1 hypothetical protein YP_962095.1 769778 D 351745 CDS YP_962096.1 120597522 4661686 complement(770299..771333) 1 NC_008750.1 PFAM: Aldose 1-epimerase; KEGG: son:SO0693 aldose 1-epimerase; aldose 1-epimerase 771333 4661686 Sputw3181_0691 Shewanella sp. W3-18-1 aldose 1-epimerase YP_962096.1 770299 R 351745 CDS YP_962097.1 120597523 4661666 complement(771362..772507) 1 NC_008750.1 KEGG: she:Shewmr4_3408 galactokinase; TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; galactokinase 772507 4661666 Sputw3181_0692 Shewanella sp. W3-18-1 galactokinase YP_962097.1 771362 R 351745 CDS YP_962098.1 120597524 4661668 complement(772756..774399) 1 NC_008750.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: son:SO0695 glutathione-regulated potassium-efflux system protein KefC, putative; sodium/hydrogen exchanger 774399 4661668 Sputw3181_0693 Shewanella sp. W3-18-1 sodium/hydrogen exchanger YP_962098.1 772756 R 351745 CDS YP_962099.1 120597525 4661654 complement(774593..776407) 1 NC_008750.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 776407 dipZ 4661654 dipZ Shewanella sp. W3-18-1 thiol:disulfide interchange protein YP_962099.1 774593 R 351745 CDS YP_962100.1 120597526 4661646 complement(776404..776727) 1 NC_008750.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: shm:Shewmr7_0547 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 776727 4661646 Sputw3181_0695 Shewanella sp. W3-18-1 CutA1 divalent ion tolerance protein YP_962100.1 776404 R 351745 CDS YP_962101.1 120597527 4661619 776980..777573 1 NC_008750.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: shm:Shewmr7_0548 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein 777573 4661619 Sputw3181_0696 Shewanella sp. W3-18-1 FxsA cytoplasmic membrane protein YP_962101.1 776980 D 351745 CDS YP_962102.1 120597528 4661614 complement(777570..778934) 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bbr:BB1960 hypothetical protein; diguanylate cyclase 778934 4661614 Sputw3181_0697 Shewanella sp. W3-18-1 diguanylate cyclase YP_962102.1 777570 R 351745 CDS YP_962103.1 120597529 4661568 complement(778989..779240) 1 NC_008750.1 KEGG: shm:Shewmr7_0573 hypothetical protein; hypothetical protein 779240 4661568 Sputw3181_0698 Shewanella sp. W3-18-1 hypothetical protein YP_962103.1 778989 R 351745 CDS YP_962104.1 120597530 4661557 complement(779406..779948) 1 NC_008750.1 PFAM: isochorismatase hydrolase; KEGG: she:Shewmr4_3363 isochorismatase hydrolase; isochorismatase hydrolase 779948 4661557 Sputw3181_0699 Shewanella sp. W3-18-1 isochorismatase hydrolase YP_962104.1 779406 R 351745 CDS YP_962105.1 120597531 4661554 780245..780583 1 NC_008750.1 PFAM: nitrogen regulatory protein P-II; KEGG: son:SO0761 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II 780583 4661554 Sputw3181_0700 Shewanella sp. W3-18-1 nitrogen regulatory protein P-II YP_962105.1 780245 D 351745 CDS YP_962106.1 120597532 4661138 780594..781844 1 NC_008750.1 PFAM: Rh family protein/ammonium transporter; KEGG: shm:Shewmr7_0592 Rh family protein/ammonium transporter; Rh family protein/ammonium transporter 781844 4661138 Sputw3181_0701 Shewanella sp. W3-18-1 Rh family protein/ammonium transporter YP_962106.1 780594 D 351745 CDS YP_962107.1 120597533 4661523 782010..782339 1 NC_008750.1 KEGG: shm:Shewmr7_0593 hypothetical protein; hypothetical protein 782339 4661523 Sputw3181_0702 Shewanella sp. W3-18-1 hypothetical protein YP_962107.1 782010 D 351745 CDS YP_962108.1 120597534 4661131 782627..783682 1 NC_008750.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 783682 4661131 Sputw3181_0703 Shewanella sp. W3-18-1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_962108.1 782627 D 351745 CDS YP_962109.1 120597535 4661519 complement(783730..783909) 1 NC_008750.1 KEGG: shm:Shewmr7_0596 hypothetical protein; hypothetical protein 783909 4661519 Sputw3181_0704 Shewanella sp. W3-18-1 hypothetical protein YP_962109.1 783730 R 351745 CDS YP_962110.1 120597536 4661495 784356..786152 1 NC_008750.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0754 ABC transporter, ATP-binding protein; ABC transporter-like protein 786152 4661495 Sputw3181_0705 Shewanella sp. W3-18-1 ABC transporter-like protein YP_962110.1 784356 D 351745 CDS YP_962111.1 120597537 4661502 786232..786489 1 NC_008750.1 KEGG: shm:Shewmr7_0598 hypothetical protein; hypothetical protein 786489 4661502 Sputw3181_0706 Shewanella sp. W3-18-1 hypothetical protein YP_962111.1 786232 D 351745 CDS YP_962112.1 120597538 4661487 complement(786533..786742) 1 NC_008750.1 KEGG: son:SO0752 hypothetical protein; hypothetical protein 786742 4661487 Sputw3181_0707 Shewanella sp. W3-18-1 hypothetical protein YP_962112.1 786533 R 351745 CDS YP_962113.1 120597539 4661485 complement(786892..788382) 1 NC_008750.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: shm:Shewmr7_0600 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 788382 4661485 Sputw3181_0708 Shewanella sp. W3-18-1 ferredoxin-dependent glutamate synthase YP_962113.1 786892 R 351745 CDS YP_962114.1 120597540 4661483 complement(788394..788999) 1 NC_008750.1 PFAM: Phosphoglycerate mutase; KEGG: son:SO0749 hypothetical protein; phosphoglycerate mutase 788999 4661483 Sputw3181_0709 Shewanella sp. W3-18-1 phosphoglycerate mutase YP_962114.1 788394 R 351745 CDS YP_962115.1 120597541 4661488 789194..789799 1 NC_008750.1 KEGG: son:SO0748 hypothetical protein; hypothetical protein 789799 4661488 Sputw3181_0710 Shewanella sp. W3-18-1 hypothetical protein YP_962115.1 789194 D 351745 CDS YP_962116.1 120597542 4661176 789969..790718 1 NC_008750.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO0747 ferredoxin--NADP reductase; oxidoreductase FAD/NAD(P)-binding subunit 790718 4661176 Sputw3181_0711 Shewanella sp. W3-18-1 oxidoreductase FAD/NAD(P)-binding subunit YP_962116.1 789969 D 351745 CDS YP_962117.1 120597543 4661463 790818..791414 1 NC_008750.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: shm:Shewmr7_0604 glutathione S-transferase, N-terminal domain protein; glutathione S-transferase domain-containing protein 791414 4661463 Sputw3181_0712 Shewanella sp. W3-18-1 glutathione S-transferase domain-containing protein YP_962117.1 790818 D 351745 CDS YP_962118.1 120597544 4661467 complement(791426..791842) 1 NC_008750.1 KEGG: shm:Shewmr7_0605 hypothetical protein; hypothetical protein 791842 4661467 Sputw3181_0713 Shewanella sp. W3-18-1 hypothetical protein YP_962118.1 791426 R 351745 CDS YP_962119.1 120597545 4661461 792058..793065 1 NC_008750.1 PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO0744 iron(III) ABC transporter, periplasmic iron(III)-binding protein; extracellular solute-binding protein 793065 4661461 Sputw3181_0714 Shewanella sp. W3-18-1 extracellular solute-binding protein YP_962119.1 792058 D 351745 CDS YP_962120.1 120597546 4661459 793143..794777 1 NC_008750.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO0743 iron(III) ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 794777 4661459 Sputw3181_0715 Shewanella sp. W3-18-1 binding-protein-dependent transport system inner membrane protein YP_962120.1 793143 D 351745 CDS YP_962121.1 120597547 4661458 794774..795823 1 NC_008750.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_0608 ABC transporter related; ABC transporter-like protein 795823 4661458 Sputw3181_0716 Shewanella sp. W3-18-1 ABC transporter-like protein YP_962121.1 794774 D 351745 CDS YP_962122.1 120597548 4661452 795999..797711 1 NC_008750.1 KEGG: shm:Shewmr7_0609 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 797711 4661452 Sputw3181_0717 Shewanella sp. W3-18-1 gamma-glutamyltransferase YP_962122.1 795999 D 351745 CDS YP_962123.1 120597549 4661451 797958..798893 1 NC_008750.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: son:SO0740 melanin biosynthesis protein TyrA, putative; Dyp-type peroxidase family protein 798893 4661451 Sputw3181_0718 Shewanella sp. W3-18-1 Dyp-type peroxidase family protein YP_962123.1 797958 D 351745 CDS YP_962124.1 120597550 4661442 complement(798966..799874) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0611 transcriptional regulator, LysR family; LysR family transcriptional regulator 799874 4661442 Sputw3181_0719 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_962124.1 798966 R 351745 CDS YP_962125.1 120597551 4661431 799981..800613 1 NC_008750.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: shm:Shewmr7_0612 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 800613 4661431 Sputw3181_0720 Shewanella sp. W3-18-1 NAD-dependent epimerase/dehydratase YP_962125.1 799981 D 351745 CDS YP_962126.1 120597552 4661437 complement(800745..801215) 1 NC_008750.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 801215 4661437 Sputw3181_0721 Shewanella sp. W3-18-1 arginine repressor YP_962126.1 800745 R 351745 CDS YP_962127.1 120597553 4661417 801499..802434 1 NC_008750.1 oxidizes malate to oxaloacetate; malate dehydrogenase 802434 4661417 Sputw3181_0722 Shewanella sp. W3-18-1 malate dehydrogenase YP_962127.1 801499 D 351745 CDS YP_962128.1 120597554 4661398 complement(802526..802924) 1 NC_008750.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: son:SO0771 hypothetical protein; putative thiol-disulfide oxidoreductase DCC 802924 4661398 Sputw3181_0723 Shewanella sp. W3-18-1 putative thiol-disulfide oxidoreductase DCC YP_962128.1 802526 R 351745 CDS YP_962129.1 120597555 4661378 803192..803911 1 NC_008750.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO0772 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 803911 4661378 Sputw3181_0724 Shewanella sp. W3-18-1 short chain dehydrogenase YP_962129.1 803192 D 351745 CDS YP_962130.1 120597556 4661391 complement(803971..804630) 1 NC_008750.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: she:Shewmr4_3336 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 804630 4661391 Sputw3181_0725 Shewanella sp. W3-18-1 5-formyltetrahydrofolate cyclo-ligase YP_962130.1 803971 R 351745 CDS YP_962131.1 120597557 4661406 complement(804936..805238) 1 NC_008750.1 PFAM: protein of unknown function DUF710; KEGG: son:SO0775 hypothetical protein; hypothetical protein 805238 4661406 Sputw3181_0726 Shewanella sp. W3-18-1 hypothetical protein YP_962131.1 804936 R 351745 CDS YP_962132.1 120597558 4661400 805406..806041 1 NC_008750.1 TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: shm:Shewmr7_0619 YecA family protein; yecA family protein 806041 4661400 Sputw3181_0727 Shewanella sp. W3-18-1 yecA family protein YP_962132.1 805406 D 351745 CDS YP_962133.1 120597559 4661389 806165..807403 1 NC_008750.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: she:Shewmr4_3333 2-polyprenyl-6-methoxyphenol 4-hydroxylase; 2-polyprenyl-6-methoxyphenol 4-hydroxylase 807403 4661389 Sputw3181_0728 Shewanella sp. W3-18-1 2-polyprenyl-6-methoxyphenol 4-hydroxylase YP_962133.1 806165 D 351745 CDS YP_962134.1 120597560 4661383 807446..808669 1 NC_008750.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0778 oxidoreductase, FAD-binding, UbiH/Coq6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 808669 4661383 Sputw3181_0729 Shewanella sp. W3-18-1 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_962134.1 807446 D 351745 CDS YP_962135.1 120597561 4661347 808924..810018 1 NC_008750.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 810018 gcvT 4661347 gcvT Shewanella sp. W3-18-1 glycine cleavage system aminomethyltransferase T YP_962135.1 808924 D 351745 CDS YP_962136.1 120597562 4661334 810044..810433 1 NC_008750.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 810433 4661334 Sputw3181_0731 Shewanella sp. W3-18-1 glycine cleavage system protein H YP_962136.1 810044 D 351745 CDS YP_962137.1 120597563 4661324 810556..813444 1 NC_008750.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 813444 4661324 Sputw3181_0732 Shewanella sp. W3-18-1 glycine dehydrogenase YP_962137.1 810556 D 351745 CDS YP_962138.1 120597564 4661308 complement(813850..814278) 1 NC_008750.1 hypothetical protein 814278 4661308 Sputw3181_0733 Shewanella sp. W3-18-1 hypothetical protein YP_962138.1 813850 R 351745 CDS YP_962139.1 120597565 4661278 complement(814768..816378) 1 NC_008750.1 KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 816378 4661278 Sputw3181_0734 Shewanella sp. W3-18-1 IS4 family transposase YP_962139.1 814768 R 351745 CDS YP_962140.1 120597566 4661277 complement(816654..818789) 1 NC_008750.1 KEGG: san:gbs1341 hypothetical protein; hypothetical protein 818789 4661277 Sputw3181_0735 Shewanella sp. W3-18-1 hypothetical protein YP_962140.1 816654 R 351745 CDS YP_962141.1 120597567 4661257 complement(818779..821097) 1 NC_008750.1 KEGG: san:gbs1342 hypothetical protein; hypothetical protein 821097 4661257 Sputw3181_0736 Shewanella sp. W3-18-1 hypothetical protein YP_962141.1 818779 R 351745 CDS YP_962142.1 120597568 4661221 complement(821148..822080) 1 NC_008750.1 PFAM: NERD domain protein; KEGG: shm:Shewmr7_0627 hypothetical protein; NERD domain-containing protein 822080 4661221 Sputw3181_0737 Shewanella sp. W3-18-1 NERD domain-containing protein YP_962142.1 821148 R 351745 CDS YP_962143.1 120597569 4661259 complement(822550..823080) 1 NC_008750.1 KEGG: pen:PSEEN2314 hypothetical protein; hypothetical protein 823080 4661259 Sputw3181_0738 Shewanella sp. W3-18-1 hypothetical protein YP_962143.1 822550 R 351745 CDS YP_962144.1 120597570 4661227 complement(823481..823726) 1 NC_008750.1 KEGG: son:SO0788 hypothetical protein; hypothetical protein 823726 4661227 Sputw3181_0739 Shewanella sp. W3-18-1 hypothetical protein YP_962144.1 823481 R 351745 CDS YP_962145.1 120597571 4661255 823991..824392 1 NC_008750.1 KEGG: son:SO0792 hypothetical protein; hypothetical protein 824392 4661255 Sputw3181_0740 Shewanella sp. W3-18-1 hypothetical protein YP_962145.1 823991 D 351745 CDS YP_962146.1 120597572 4661251 824562..826172 1 NC_008750.1 KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 826172 4661251 Sputw3181_0741 Shewanella sp. W3-18-1 IS4 family transposase YP_962146.1 824562 D 351745 CDS YP_962147.1 120597573 4661247 complement(826169..826369) 1 NC_008750.1 KEGG: cps:CPS_2516 hypothetical protein; hypothetical protein 826369 4661247 Sputw3181_0742 Shewanella sp. W3-18-1 hypothetical protein YP_962147.1 826169 R 351745 CDS YP_962148.1 120597574 4661233 complement(826569..828233) 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: shm:Shewmr7_3199 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 828233 4661233 Sputw3181_0743 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_962148.1 826569 R 351745 CDS YP_962149.1 120597575 4661235 828526..830712 1 NC_008750.1 TIGRFAM: uncharacterized domain; PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: shm:Shewmr7_0632 uncharacterized domain; hypothetical protein 830712 4661235 Sputw3181_0744 Shewanella sp. W3-18-1 hypothetical protein YP_962149.1 828526 D 351745 CDS YP_962150.1 120597576 4661238 830830..831399 1 NC_008750.1 KEGG: eba:ebA616 hypothetical protein; hypothetical protein 831399 4661238 Sputw3181_0745 Shewanella sp. W3-18-1 hypothetical protein YP_962150.1 830830 D 351745 CDS YP_962151.1 120597577 4659090 831420..831764 1 NC_008750.1 KEGG: eba:ebB16 hypothetical protein; hypothetical protein 831764 4659090 Sputw3181_0746 Shewanella sp. W3-18-1 hypothetical protein YP_962151.1 831420 D 351745 CDS YP_962152.1 120597578 4661220 831801..832049 1 NC_008750.1 hypothetical protein 832049 4661220 Sputw3181_0747 Shewanella sp. W3-18-1 hypothetical protein YP_962152.1 831801 D 351745 CDS YP_962153.1 120597579 4661218 832030..832308 1 NC_008750.1 KEGG: rpa:RPA2335 hypothetical protein; hypothetical protein 832308 4661218 Sputw3181_0748 Shewanella sp. W3-18-1 hypothetical protein YP_962153.1 832030 D 351745 CDS YP_962154.1 120597580 4661215 832326..832664 1 NC_008750.1 KEGG: rpa:RPA2334 hypothetical protein; hypothetical protein 832664 4661215 Sputw3181_0749 Shewanella sp. W3-18-1 hypothetical protein YP_962154.1 832326 D 351745 CDS YP_962155.1 120597581 4661139 832651..834756 1 NC_008750.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: eba:ebA609 putative cation transport ATPase; heavy metal translocating P-type ATPase 834756 4661139 Sputw3181_0750 Shewanella sp. W3-18-1 heavy metal translocating P-type ATPase YP_962155.1 832651 D 351745 CDS YP_962156.1 120597582 4661112 complement(834839..835300) 1 NC_008750.1 KEGG: she:Shewmr4_3319 hypothetical protein; hypothetical protein 835300 4661112 Sputw3181_0751 Shewanella sp. W3-18-1 hypothetical protein YP_962156.1 834839 R 351745 CDS YP_962157.1 120597583 4661199 complement(835300..837462) 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_3318 TonB-dependent receptor; TonB-dependent receptor 837462 4661199 Sputw3181_0752 Shewanella sp. W3-18-1 TonB-dependent receptor YP_962157.1 835300 R 351745 CDS YP_962158.1 120597584 4660756 837615..838097 1 NC_008750.1 PFAM: protein of unknown function DUF985; KEGG: shm:Shewmr7_0636 protein of unknown function DUF985; hypothetical protein 838097 4660756 Sputw3181_0753 Shewanella sp. W3-18-1 hypothetical protein YP_962158.1 837615 D 351745 CDS YP_962159.1 120597585 4660753 838260..839039 1 NC_008750.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 839039 4660753 Sputw3181_0754 Shewanella sp. W3-18-1 prolipoprotein diacylglyceryl transferase YP_962159.1 838260 D 351745 CDS YP_962160.1 120597586 4660748 complement(839139..840056) 1 NC_008750.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: shm:Shewmr7_0637 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 840056 4660748 Sputw3181_0755 Shewanella sp. W3-18-1 alpha/beta hydrolase domain-containing protein YP_962160.1 839139 R 351745 CDS YP_962161.1 120597587 4660408 840342..841802 1 NC_008750.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: shm:Shewmr7_0638 MATE efflux family protein; MATE efflux family protein 841802 4660408 Sputw3181_0756 Shewanella sp. W3-18-1 MATE efflux family protein YP_962161.1 840342 D 351745 CDS YP_962162.1 120597588 4660743 complement(841830..842435) 1 NC_008750.1 KEGG: son:SO0804 hypothetical protein; hypothetical protein 842435 4660743 Sputw3181_0757 Shewanella sp. W3-18-1 hypothetical protein YP_962162.1 841830 R 351745 CDS YP_962163.1 120597589 4660402 complement(842535..842963) 1 NC_008750.1 PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_0640 CBS domain containing membrane protein; hypothetical protein 842963 4660402 Sputw3181_0758 Shewanella sp. W3-18-1 hypothetical protein YP_962163.1 842535 R 351745 CDS YP_962164.1 120597590 4660707 843234..844997 1 NC_008750.1 PFAM: Alkaline phosphatase; KEGG: she:Shewmr4_3312 twin-arginine translocation pathway signal; alkaline phosphatase 844997 4660707 Sputw3181_0759 Shewanella sp. W3-18-1 alkaline phosphatase YP_962164.1 843234 D 351745 CDS YP_962165.1 120597591 4660701 845285..845851 1 NC_008750.1 KEGG: shm:Shewmr7_0642 hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase 845851 4660701 Sputw3181_0760 Shewanella sp. W3-18-1 hypoxanthine-guanine phosphoribosyltransferase YP_962165.1 845285 D 351745 CDS YP_962166.1 120597592 4660699 846180..846482 1 NC_008750.1 KEGG: she:Shewmr4_3309 hypothetical protein; hypothetical protein 846482 4660699 Sputw3181_0761 Shewanella sp. W3-18-1 hypothetical protein YP_962166.1 846180 D 351745 CDS YP_962167.1 120597593 4660672 846884..848074 1 NC_008750.1 KEGG: sdn:Sden_0953 hypothetical protein; hypothetical protein 848074 4660672 Sputw3181_0762 Shewanella sp. W3-18-1 hypothetical protein YP_962167.1 846884 D 351745 CDS YP_962168.1 120597594 4660655 complement(848169..848645) 1 NC_008750.1 TIGRFAM: Azurin; PFAM: blue (type 1) copper domain protein; KEGG: shm:Shewmr7_0645 blue (type 1) copper domain protein; azurin 848645 4660655 Sputw3181_0763 Shewanella sp. W3-18-1 azurin YP_962168.1 848169 R 351745 CDS YP_962169.1 120597595 4660391 complement(848816..849727) 1 NC_008750.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 849727 4660391 Sputw3181_0764 Shewanella sp. W3-18-1 ribokinase YP_962169.1 848816 R 351745 CDS YP_962170.1 120597596 4661875 complement(849747..850703) 1 NC_008750.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 850703 rihA 4661875 rihA Shewanella sp. W3-18-1 ribonucleoside hydrolase 1 YP_962170.1 849747 R 351745 CDS YP_962171.1 120597597 4660625 850907..852349 1 NC_008750.1 KEGG: son:SO0813 hypothetical protein; hypothetical protein 852349 4660625 Sputw3181_0766 Shewanella sp. W3-18-1 hypothetical protein YP_962171.1 850907 D 351745 CDS YP_962172.1 120597598 4660598 852810..854771 1 NC_008750.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_0651 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 854771 4660598 Sputw3181_0767 Shewanella sp. W3-18-1 TonB-dependent siderophore receptor YP_962172.1 852810 D 351745 CDS YP_962173.1 120597599 4660588 complement(854844..855839) 1 NC_008750.1 KEGG: sfr:Sfri_1031 hypothetical protein; hypothetical protein 855839 4660588 Sputw3181_0768 Shewanella sp. W3-18-1 hypothetical protein YP_962173.1 854844 R 351745 CDS YP_962174.1 120597600 4660369 856534..857262 1 NC_008750.1 PFAM: HDOD; KEGG: shm:Shewmr7_0652 putative signal transduction protein; putative signal transduction protein 857262 4660369 Sputw3181_0769 Shewanella sp. W3-18-1 putative signal transduction protein YP_962174.1 856534 D 351745 CDS YP_962175.1 120597601 4660543 complement(857338..858243) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0653 transcriptional regulator, LysR family; LysR family transcriptional regulator 858243 4660543 Sputw3181_0770 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_962175.1 857338 R 351745 CDS YP_962176.1 120597602 4660354 858444..860714 1 NC_008750.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 860714 4660354 Sputw3181_0771 Shewanella sp. W3-18-1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_962176.1 858444 D 351745 CDS YP_962177.1 120597603 4660524 861069..862319 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: sugar-specific permease, EIIA 1 domain; secretion protein HlyD family protein; KEGG: son:SO0820 HlyD family secretion protein; RND family efflux transporter MFP subunit 862319 4660524 Sputw3181_0772 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_962177.1 861069 D 351745 CDS YP_962178.1 120597604 4660512 862322..864265 1 NC_008750.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: son:SO0821 ABC transporter, ATP-binding/permease protein; ABC transporter-like protein 864265 4660512 Sputw3181_0773 Shewanella sp. W3-18-1 ABC transporter-like protein YP_962178.1 862322 D 351745 CDS YP_962179.1 120597605 4660313 864273..865688 1 NC_008750.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: son:SO0822 outer membrane efflux family protein; RND efflux system outer membrane lipoprotein 865688 4660313 Sputw3181_0774 Shewanella sp. W3-18-1 RND efflux system outer membrane lipoprotein YP_962179.1 864273 D 351745 CDS YP_962180.1 120597606 4660502 865846..866934 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dvu:DVU0416 GGDEF domain protein; diguanylate cyclase 866934 4660502 Sputw3181_0775 Shewanella sp. W3-18-1 diguanylate cyclase YP_962180.1 865846 D 351745 CDS YP_962181.1 120597607 4660499 complement(866956..868092) 1 NC_008750.1 PFAM: peptidase M50; KEGG: shm:Shewmr7_0672 peptidase M50; peptidase M50 868092 4660499 Sputw3181_0776 Shewanella sp. W3-18-1 peptidase M50 YP_962181.1 866956 R 351745 CDS YP_962182.1 120597608 4660496 complement(868340..868717) 1 NC_008750.1 KEGG: she:Shewmr4_3274 hypothetical protein; hypothetical protein 868717 4660496 Sputw3181_0777 Shewanella sp. W3-18-1 hypothetical protein YP_962182.1 868340 R 351745 CDS YP_962183.1 120597609 4661802 complement(868886..870574) 1 NC_008750.1 PFAM: protein of unknown function DUF342; KEGG: she:Shewmr4_3273 protein of unknown function DUF342; hypothetical protein 870574 4661802 Sputw3181_0778 Shewanella sp. W3-18-1 hypothetical protein YP_962183.1 868886 R 351745 CDS YP_962184.1 120597610 4660475 complement(871002..872045) 1 NC_008750.1 PFAM: methyltransferase small; Methyltransferase small, N-terminal domain protein; KEGG: she:Shewmr4_0687 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 872045 4660475 Sputw3181_0779 Shewanella sp. W3-18-1 rRNA (guanine-N(2)-)-methyltransferase YP_962184.1 871002 R 351745 CDS YP_962185.1 120597611 4660444 complement(872197..873519) 1 NC_008750.1 PFAM: Alkaline phosphatase; KEGG: shm:Shewmr7_3334 alkaline phosphatase; alkaline phosphatase 873519 4660444 Sputw3181_0780 Shewanella sp. W3-18-1 alkaline phosphatase YP_962185.1 872197 R 351745 CDS YP_962186.1 120597612 4660443 complement(873606..874559) 1 NC_008750.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 874559 4660443 Sputw3181_0781 Shewanella sp. W3-18-1 glutathione synthetase YP_962186.1 873606 R 351745 CDS YP_962187.1 120597613 4660088 complement(874624..875355) 1 NC_008750.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 875355 4660088 Sputw3181_0782 Shewanella sp. W3-18-1 16S ribosomal RNA methyltransferase RsmE YP_962187.1 874624 R 351745 CDS YP_962188.1 120597614 4660086 complement(875364..876143) 1 NC_008750.1 PFAM: Endonuclease I; KEGG: she:Shewmr4_0691 deoxyribonuclease I; deoxyribonuclease I 876143 4660086 Sputw3181_0783 Shewanella sp. W3-18-1 deoxyribonuclease I YP_962188.1 875364 R 351745 CDS YP_962189.1 120597615 4659837 complement(876281..876940) 1 NC_008750.1 PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: son:SO0834 sprT protein, putative; hypothetical protein 876940 4659837 Sputw3181_0784 Shewanella sp. W3-18-1 hypothetical protein YP_962189.1 876281 R 351745 CDS YP_962190.1 120597616 4660067 complement(877112..878266) 1 NC_008750.1 KEGG: she:Shewmr4_0693 hypothetical protein; hypothetical protein 878266 4660067 Sputw3181_0785 Shewanella sp. W3-18-1 hypothetical protein YP_962190.1 877112 R 351745 CDS YP_962191.1 120597617 4659829 878634..879446 1 NC_008750.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: son:SO0837 beta-lactamase, putative; beta-lactamase 879446 4659829 Sputw3181_0786 Shewanella sp. W3-18-1 beta-lactamase YP_962191.1 878634 D 351745 CDS YP_962192.1 120597618 4660045 complement(879527..880438) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_0695 transcriptional regulator, LysR family; LysR family transcriptional regulator 880438 4660045 Sputw3181_0787 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_962192.1 879527 R 351745 CDS YP_962193.1 120597619 4660014 880560..885113 1 NC_008750.1 PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase; carbamoyl-phosphate synthase subunit L 885113 4660014 Sputw3181_0788 Shewanella sp. W3-18-1 carbamoyl-phosphate synthase subunit L YP_962193.1 880560 D 351745 CDS YP_962194.1 120597620 4659990 885680..887773 1 NC_008750.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 887773 4659990 Sputw3181_0789 Shewanella sp. W3-18-1 elongation factor G YP_962194.1 885680 D 351745 CDS YP_962195.1 120597621 4661368 complement(887888..888775) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_3323 transcriptional regulator, LysR family; LysR family transcriptional regulator 888775 4661368 Sputw3181_0790 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_962195.1 887888 R 351745 CDS YP_962196.1 120597622 4659904 888869..889021 1 NC_008750.1 KEGG: shm:Shewmr7_3322 hypothetical protein; hypothetical protein 889021 4659904 Sputw3181_0791 Shewanella sp. W3-18-1 hypothetical protein YP_962196.1 888869 D 351745 CDS YP_962197.1 120597623 4659897 complement(889220..889651) 1 NC_008750.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: shm:Shewmr7_3321 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit 889651 4659897 Sputw3181_0792 Shewanella sp. W3-18-1 nitrate reductase cytochrome c-type subunit YP_962197.1 889220 R 351745 CDS YP_962198.1 120597624 4659896 complement(889648..890619) 1 NC_008750.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 890619 napH 4659896 napH Shewanella sp. W3-18-1 quinol dehydrogenase membrane component YP_962198.1 889648 R 351745 CDS YP_962199.1 120597625 4659890 complement(890616..891350) 1 NC_008750.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 891350 napG 4659890 napG Shewanella sp. W3-18-1 quinol dehydrogenase periplasmic component YP_962199.1 890616 R 351745 CDS YP_962200.1 120597626 4659879 complement(891404..893884) 1 NC_008750.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 893884 4659879 Sputw3181_0795 Shewanella sp. W3-18-1 nitrate reductase catalytic subunit YP_962200.1 891404 R 351745 CDS YP_962201.1 120597627 4659867 complement(893881..894150) 1 NC_008750.1 PFAM: NapD family protein; KEGG: son:SO0849 napD protein; NapD family protein 894150 4659867 Sputw3181_0796 Shewanella sp. W3-18-1 NapD family protein YP_962201.1 893881 R 351745 CDS YP_962202.1 120597628 4659864 complement(894473..895684) 1 NC_008750.1 KEGG: she:Shewmr4_0711 hypothetical protein; hypothetical protein 895684 4659864 Sputw3181_0797 Shewanella sp. W3-18-1 hypothetical protein YP_962202.1 894473 R 351745 CDS YP_962203.1 120597629 4659851 complement(895681..898317) 1 NC_008750.1 PFAM: protein of unknown function DUF214; KEGG: son:SO0856 putative ABC transport system permease protein; hypothetical protein 898317 4659851 Sputw3181_0798 Shewanella sp. W3-18-1 hypothetical protein YP_962203.1 895681 R 351745 CDS YP_962204.1 120597630 4659431 complement(898314..898985) 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3309 ABC transporter related; ABC transporter-like protein 898985 4659431 Sputw3181_0799 Shewanella sp. W3-18-1 ABC transporter-like protein YP_962204.1 898314 R 351745 CDS YP_962205.1 120597631 4659389 899727..901085 1 NC_008750.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: she:Shewmr4_0714 amino acid carrier protein; amino acid carrier protein 901085 4659389 Sputw3181_0800 Shewanella sp. W3-18-1 amino acid carrier protein YP_962205.1 899727 D 351745 CDS YP_962206.1 120597632 4659365 901218..906533 1 NC_008750.1 KEGG: shm:Shewmr7_3307 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 906533 4659365 Sputw3181_0801 Shewanella sp. W3-18-1 multi-sensor hybrid histidine kinase YP_962206.1 901218 D 351745 CDS YP_962207.1 120597633 4659112 906688..907704 1 NC_008750.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: shm:Shewmr7_3306 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase 907704 4659112 Sputw3181_0802 Shewanella sp. W3-18-1 response regulator receiver modulated metal dependent phosphohydrolase YP_962207.1 906688 D 351745 CDS YP_962208.1 120597634 4659328 complement(907767..908723) 1 NC_008750.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: son:SO0861 hypothetical protein; glycine cleavage T protein (aminomethyl transferase) 908723 4659328 Sputw3181_0803 Shewanella sp. W3-18-1 glycine cleavage T protein (aminomethyl transferase) YP_962208.1 907767 R 351745 CDS YP_962209.1 120597635 4659298 complement(908874..910103) 1 NC_008750.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 910103 4659298 Sputw3181_0804 Shewanella sp. W3-18-1 D-3-phosphoglycerate dehydrogenase YP_962209.1 908874 R 351745 CDS YP_962210.1 120597636 4659095 910258..910866 1 NC_008750.1 KEGG: she:Shewmr4_0719 hypothetical protein; hypothetical protein 910866 4659095 Sputw3181_0805 Shewanella sp. W3-18-1 hypothetical protein YP_962210.1 910258 D 351745 CDS YP_962211.1 120597637 4661216 911296..911925 1 NC_008750.1 PFAM: regulatory protein, LuxR; KEGG: she:Shewmr4_0720 transcriptional regulator, LuxR family; response regulator receiver protein 911925 4661216 Sputw3181_0806 Shewanella sp. W3-18-1 response regulator receiver protein YP_962211.1 911296 D 351745 CDS YP_962212.1 120597638 4659194 complement(912094..913584) 1 NC_008750.1 PFAM: Curlin associated repeat protein; KEGG: she:Shewmr4_0721 curlin associated repeat protein; curlin-associated protein 913584 4659194 Sputw3181_0807 Shewanella sp. W3-18-1 curlin-associated protein YP_962212.1 912094 R 351745 CDS YP_962213.1 120597639 4658872 complement(913599..914018) 1 NC_008750.1 PFAM: Curlin associated repeat protein; KEGG: son:SO0866 minor curlin subunit CsgB, putative; curlin-associated protein 914018 4658872 Sputw3181_0808 Shewanella sp. W3-18-1 curlin-associated protein YP_962213.1 913599 R 351745 CDS YP_962214.1 120597640 4658866 complement(914341..914868) 1 NC_008750.1 KEGG: she:Shewmr4_0724 hypothetical protein; hypothetical protein 914868 4658866 Sputw3181_0809 Shewanella sp. W3-18-1 hypothetical protein YP_962214.1 914341 R 351745 CDS YP_962215.1 120597641 4658844 complement(915080..915925) 1 NC_008750.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 915925 panC 4658844 panC Shewanella sp. W3-18-1 pantoate--beta-alanine ligase YP_962215.1 915080 R 351745 CDS YP_962216.1 120597642 4658807 complement(915979..916773) 1 NC_008750.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 916773 panB 4658807 panB Shewanella sp. W3-18-1 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_962216.1 915979 R 351745 CDS YP_962217.1 120597643 4658800 complement(916837..917319) 1 NC_008750.1 KEGG: son:SO0871 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 917319 4658800 Sputw3181_0812 Shewanella sp. W3-18-1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_962217.1 916837 R 351745 CDS YP_962218.1 120597644 4658775 complement(917319..918803) 1 NC_008750.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: she:Shewmr4_0728 poly(A) polymerase; poly(A) polymerase 918803 4658775 Sputw3181_0813 Shewanella sp. W3-18-1 poly(A) polymerase YP_962218.1 917319 R 351745 CDS YP_962219.1 120597645 4658773 complement(918919..919818) 1 NC_008750.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: shm:Shewmr7_3293 glutamyl-tRNA synthetase, class Ic; glutamate--tRNA ligase 919818 4658773 Sputw3181_0814 Shewanella sp. W3-18-1 glutamate--tRNA ligase YP_962219.1 918919 R 351745 CDS YP_962220.1 120597646 4658762 complement(919995..920438) 1 NC_008750.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: shm:Shewmr7_3292 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 920438 4658762 Sputw3181_0815 Shewanella sp. W3-18-1 TraR/DksA family transcriptional regulator YP_962220.1 919995 R 351745 CDS YP_962221.1 120597647 4658744 complement(920602..921306) 1 NC_008750.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 921306 4658744 Sputw3181_0816 Shewanella sp. W3-18-1 sugar fermentation stimulation protein A YP_962221.1 920602 R 351745 CDS YP_962222.1 120597648 4658736 921494..922786 1 NC_008750.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 922786 4658736 Sputw3181_0817 Shewanella sp. W3-18-1 aminopeptidase B YP_962222.1 921494 D 351745 CDS YP_962223.1 120597649 4661443 922922..923464 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0877 acetyltransferase, GNAT family; N-acetyltransferase GCN5 923464 4661443 Sputw3181_0818 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_962223.1 922922 D 351745 CDS YP_962224.1 120597650 4658721 complement(923991..924878) 1 NC_008750.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: shm:Shewmr7_3288 phosphoribulokinase; phosphoribulokinase 924878 4658721 Sputw3181_0819 Shewanella sp. W3-18-1 phosphoribulokinase YP_962224.1 923991 R 351745 CDS YP_962225.1 120597651 4661175 complement(924969..925214) 1 NC_008750.1 KEGG: shm:Shewmr7_3287 protein of unknown function UPF0270; hypothetical protein 925214 4661175 Sputw3181_0820 Shewanella sp. W3-18-1 hypothetical protein YP_962225.1 924969 R 351745 CDS YP_962226.1 120597652 4658702 complement(925198..926226) 1 NC_008750.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO0880 hypothetical protein; alpha/beta hydrolase fold domain-containing protein 926226 4658702 Sputw3181_0821 Shewanella sp. W3-18-1 alpha/beta hydrolase fold domain-containing protein YP_962226.1 925198 R 351745 CDS YP_962227.1 120597653 4661462 926336..926842 1 NC_008750.1 KEGG: son:SO0881 hypothetical protein; hypothetical protein 926842 4661462 Sputw3181_0822 Shewanella sp. W3-18-1 hypothetical protein YP_962227.1 926336 D 351745 CDS YP_962228.1 120597654 4658693 926854..928521 1 NC_008750.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: son:SO0882 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 928521 4658693 Sputw3181_0823 Shewanella sp. W3-18-1 glucose-methanol-choline oxidoreductase YP_962228.1 926854 D 351745 CDS YP_962229.1 120597655 4658685 928523..928933 1 NC_008750.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: son:SO0883 hypothetical protein; glutathione-dependent formaldehyde-activating protein 928933 4658685 Sputw3181_0824 Shewanella sp. W3-18-1 glutathione-dependent formaldehyde-activating protein YP_962229.1 928523 D 351745 CDS YP_962230.1 120597656 4661223 complement(928971..929465) 1 NC_008750.1 KEGG: shm:Shewmr7_3282 hypothetical protein; hypothetical protein 929465 4661223 Sputw3181_0825 Shewanella sp. W3-18-1 hypothetical protein YP_962230.1 928971 R 351745 CDS YP_962231.1 120597657 4658667 complement(929477..931387) 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0885 ABC transporter, ATP-binding protein; ABC transporter-like protein 931387 4658667 Sputw3181_0826 Shewanella sp. W3-18-1 ABC transporter-like protein YP_962231.1 929477 R 351745 CDS YP_962232.1 120597658 4658665 931640..931843 1 NC_008750.1 KEGG: sdn:Sden_3177 hypothetical protein; hypothetical protein 931843 4658665 Sputw3181_0827 Shewanella sp. W3-18-1 hypothetical protein YP_962232.1 931640 D 351745 CDS YP_962233.1 120597659 4661286 932358..932819 1 NC_008750.1 hypothetical protein 932819 4661286 Sputw3181_0828 Shewanella sp. W3-18-1 hypothetical protein YP_962233.1 932358 D 351745 CDS YP_962234.1 120597660 4658661 933015..933137 1 NC_008750.1 KEGG: son:SO1889 hypothetical protein; hypothetical protein 933137 4658661 Sputw3181_0829 Shewanella sp. W3-18-1 hypothetical protein YP_962234.1 933015 D 351745 CDS YP_962235.1 120597661 4659065 933316..933939 1 NC_008750.1 KEGG: she:Shewmr4_2555 protein of unknown function DUF1568; hypothetical protein 933939 4659065 Sputw3181_0831 Shewanella sp. W3-18-1 hypothetical protein YP_962235.1 933316 D 351745 CDS YP_962236.1 120597662 4661618 934279..934809 1 NC_008750.1 KEGG: son:SO2169.1 hypothetical protein; hypothetical protein 934809 4661618 Sputw3181_0832 Shewanella sp. W3-18-1 hypothetical protein YP_962236.1 934279 D 351745 CDS YP_962237.1 120597663 4657738 935514..936401 1 NC_008750.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: she:Shewmr4_0744 pirin domain protein domain protein; pirin domain-containing protein 936401 4657738 Sputw3181_0833 Shewanella sp. W3-18-1 pirin domain-containing protein YP_962237.1 935514 D 351745 CDS YP_962238.1 120597664 4658184 936740..938116 1 NC_008750.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 938116 4658184 Sputw3181_0834 Shewanella sp. W3-18-1 ATP-dependent RNA helicase DbpA YP_962238.1 936740 D 351745 CDS YP_962239.1 120597665 4657732 938394..939962 1 NC_008750.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: pen:PSEEN3931 aerotaxis receptor; methyl-accepting chemotaxis sensory transducer 939962 4657732 Sputw3181_0835 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_962239.1 938394 D 351745 CDS YP_962240.1 120597666 4658163 complement(940065..941717) 1 NC_008750.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: she:Shewmr4_3129 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 941717 4658163 Sputw3181_0836 Shewanella sp. W3-18-1 DEAD/DEAH box helicase YP_962240.1 940065 R 351745 CDS YP_962241.1 120597667 4658160 942151..943191 1 NC_008750.1 KEGG: shm:Shewmr7_0839 hypothetical protein; hypothetical protein 943191 4658160 Sputw3181_0837 Shewanella sp. W3-18-1 hypothetical protein YP_962241.1 942151 D 351745 CDS YP_962242.1 120597668 4657728 943386..945317 1 NC_008750.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 945317 4657728 Sputw3181_0838 Shewanella sp. W3-18-1 cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_962242.1 943386 D 351745 CDS YP_962243.1 120597669 4657726 945314..947065 1 NC_008750.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 947065 4657726 Sputw3181_0839 Shewanella sp. W3-18-1 cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_962243.1 945314 D 351745 CDS YP_962244.1 120597670 4657724 947113..947706 1 NC_008750.1 TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: son:SO3778 adenylate cyclase CyaB, putative; putative adenylyl cyclase CyaB 947706 4657724 Sputw3181_0840 Shewanella sp. W3-18-1 putative adenylyl cyclase CyaB YP_962244.1 947113 D 351745 CDS YP_962245.1 120597671 4658112 complement(947816..947992) 1 NC_008750.1 KEGG: son:SO3777 hypothetical protein; hypothetical protein 947992 4658112 Sputw3181_0841 Shewanella sp. W3-18-1 hypothetical protein YP_962245.1 947816 R 351745 CDS YP_962246.1 120597672 4658102 complement(948090..948824) 1 NC_008750.1 PFAM: protein of unknown function DUF599; KEGG: son:SO3776 hypothetical protein; hypothetical protein 948824 4658102 Sputw3181_0842 Shewanella sp. W3-18-1 hypothetical protein YP_962246.1 948090 R 351745 CDS YP_962247.1 120597673 4658097 complement(949627..949977) 1 NC_008750.1 hypothetical protein 949977 4658097 Sputw3181_0843 Shewanella sp. W3-18-1 hypothetical protein YP_962247.1 949627 R 351745 CDS YP_962248.1 120597674 4658088 complement(950014..950511) 1 NC_008750.1 hypothetical protein 950511 4658088 Sputw3181_0844 Shewanella sp. W3-18-1 hypothetical protein YP_962248.1 950014 R 351745 CDS YP_962249.1 120597675 4658087 complement(951469..954663) 1 NC_008750.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 954663 4658087 Sputw3181_0845 Shewanella sp. W3-18-1 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_962249.1 951469 R 351745 CDS YP_962250.1 120597676 4657713 complement(954912..955460) 1 NC_008750.1 PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: shm:Shewmr7_0851 SH3 domain protein domain protein; SH3 type 3 domain-containing protein 955460 4657713 Sputw3181_0846 Shewanella sp. W3-18-1 SH3 type 3 domain-containing protein YP_962250.1 954912 R 351745 CDS YP_962251.1 120597677 4658077 complement(955657..956946) 1 NC_008750.1 PFAM: phosphate transporter; KEGG: she:Shewmr4_3120 phosphate transporter; phosphate transporter 956946 4658077 Sputw3181_0847 Shewanella sp. W3-18-1 phosphate transporter YP_962251.1 955657 R 351745 CDS YP_962252.1 120597678 4658076 complement(956972..957652) 1 NC_008750.1 PFAM: protein of unknown function DUF47; KEGG: shm:Shewmr7_0853 protein of unknown function DUF47; hypothetical protein 957652 4658076 Sputw3181_0848 Shewanella sp. W3-18-1 hypothetical protein YP_962252.1 956972 R 351745 CDS YP_962253.1 120597679 4657710 957870..959396 1 NC_008750.1 PFAM: adenylate cyclase; KEGG: she:Shewmr4_3118 adenylate cyclase; adenylate cyclase 959396 4657710 Sputw3181_0849 Shewanella sp. W3-18-1 adenylate cyclase YP_962253.1 957870 D 351745 CDS YP_962254.1 120597680 4657709 complement(959472..960293) 1 NC_008750.1 PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: son:SO3768 ion transporter; Ion transport 2 domain-containing protein 960293 4657709 Sputw3181_0850 Shewanella sp. W3-18-1 Ion transport 2 domain-containing protein YP_962254.1 959472 R 351745 CDS YP_962255.1 120597681 4658049 complement(960436..960765) 1 NC_008750.1 KEGG: shm:Shewmr7_0856 hypothetical protein; hypothetical protein 960765 4658049 Sputw3181_0851 Shewanella sp. W3-18-1 hypothetical protein YP_962255.1 960436 R 351745 CDS YP_962256.1 120597682 4657704 complement(960887..961540) 1 NC_008750.1 KEGG: son:SO3766 hypothetical protein; hypothetical protein 961540 4657704 Sputw3181_0852 Shewanella sp. W3-18-1 hypothetical protein YP_962256.1 960887 R 351745 CDS YP_962257.1 120597683 4658016 complement(961699..962388) 1 NC_008750.1 PFAM: PspA/IM30 family protein; KEGG: son:SO3765 hypothetical protein; phage shock protein A, PspA 962388 4658016 Sputw3181_0853 Shewanella sp. W3-18-1 phage shock protein A, PspA YP_962257.1 961699 R 351745 CDS YP_962258.1 120597684 4658001 complement(962400..962813) 1 NC_008750.1 KEGG: shm:Shewmr7_0859 hypothetical protein; hypothetical protein 962813 4658001 Sputw3181_0854 Shewanella sp. W3-18-1 hypothetical protein YP_962258.1 962400 R 351745 CDS YP_962259.1 120597685 4658000 complement(962892..964616) 1 NC_008750.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 964616 4658000 Sputw3181_0855 Shewanella sp. W3-18-1 spermidine synthase YP_962259.1 962892 R 351745 CDS YP_962260.1 120597686 4657977 complement(964621..965520) 1 NC_008750.1 KEGG: shm:Shewmr7_0861 protein of unknown function DUF350; hypothetical protein 965520 4657977 Sputw3181_0856 Shewanella sp. W3-18-1 hypothetical protein YP_962260.1 964621 R 351745 CDS YP_962261.1 120597687 4657693 complement(965534..966517) 1 NC_008750.1 KEGG: she:Shewmr4_3110 hypothetical protein; hypothetical protein 966517 4657693 Sputw3181_0857 Shewanella sp. W3-18-1 hypothetical protein YP_962261.1 965534 R 351745 CDS YP_962262.1 120597688 4657954 966743..969607 1 NC_008750.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 969607 4657954 Sputw3181_0858 Shewanella sp. W3-18-1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_962262.1 966743 D 351745 CDS YP_962263.1 120597689 4658350 969684..970655 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: shm:Shewmr7_0864 diguanylate cyclase with GAF sensor; diguanylate cyclase 970655 4658350 Sputw3181_0859 Shewanella sp. W3-18-1 diguanylate cyclase YP_962263.1 969684 D 351745 CDS YP_962264.1 120597690 4658360 complement(970738..971697) 1 NC_008750.1 PFAM: protein of unknown function DUF897; KEGG: she:Shewmr4_3107 protein of unknown function DUF897; hypothetical protein 971697 4658360 Sputw3181_0860 Shewanella sp. W3-18-1 hypothetical protein YP_962264.1 970738 R 351745 CDS YP_962265.1 120597691 4658375 971761..972831 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3757 rubisco operon transcriptional regulator; LysR family transcriptional regulator 972831 4658375 Sputw3181_0861 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_962265.1 971761 D 351745 CDS YP_962266.1 120597692 4658381 973490..975214 1 NC_008750.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 975214 4658381 Sputw3181_0862 Shewanella sp. W3-18-1 potassium-transporting ATPase subunit A YP_962266.1 973490 D 351745 CDS YP_962267.1 120597693 4658384 975217..977235 1 NC_008750.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: xcb:XC_3531 potassium-transporting ATPase B chain; K+-transporting ATPase subunit B 977235 4658384 Sputw3181_0863 Shewanella sp. W3-18-1 K+-transporting ATPase subunit B YP_962267.1 975217 D 351745 CDS YP_962268.1 120597694 4658398 977245..977571 1 NC_008750.1 PFAM: K+ transporting ATPase, KdpC subunit; KEGG: tte:TTE2010 K+-transporting ATPase, c chain; K+ transporting ATPase, KdpC subunit 977571 4658398 Sputw3181_0864 Shewanella sp. W3-18-1 K+ transporting ATPase, KdpC subunit YP_962268.1 977245 D 351745 CDS YP_962269.1 120597695 4658397 977614..977844 1 NC_008750.1 PFAM: K+ transporting ATPase, KdpC subunit; KEGG: aci:ACIAD2976 potassium-transporting ATPase C chain; K+ transporting ATPase, KdpC subunit 977844 4658397 Sputw3181_0865 Shewanella sp. W3-18-1 K+ transporting ATPase, KdpC subunit YP_962269.1 977614 D 351745 CDS YP_962270.1 120597696 4658402 977879..978649 1 NC_008750.1 KEGG: pfo:Pfl_3155 hypothetical protein; hypothetical protein 978649 4658402 Sputw3181_0866 Shewanella sp. W3-18-1 hypothetical protein YP_962270.1 977879 D 351745 CDS YP_962271.1 120597697 4658414 978652..981312 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Osmosensitive K+ channel His kinase sensor; KEGG: xom:XOO_3621 two-component system sensor protein; osmosensitive K+ channel signal transduction histidine kinase 981312 4658414 Sputw3181_0867 Shewanella sp. W3-18-1 osmosensitive K+ channel signal transduction histidine kinase YP_962271.1 978652 D 351745 CDS YP_962272.1 120597698 4658427 981362..982045 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psb:Psyr_2051 response regulator receiver:transcriptional regulatory protein, C-terminal; two component transcriptional regulator 982045 4658427 Sputw3181_0868 Shewanella sp. W3-18-1 two component transcriptional regulator YP_962272.1 981362 D 351745 CDS YP_962273.1 120597699 4658462 complement(982073..983290) 1 NC_008750.1 PFAM: AFG1-family ATPase; KEGG: she:Shewmr4_3102 AFG1-family ATPase; AFG1 family ATPase 983290 4658462 Sputw3181_0869 Shewanella sp. W3-18-1 AFG1 family ATPase YP_962273.1 982073 R 351745 CDS YP_962274.1 120597700 4658463 983534..984361 1 NC_008750.1 KEGG: shm:Shewmr7_0880 hypothetical protein; hypothetical protein 984361 4658463 Sputw3181_0870 Shewanella sp. W3-18-1 hypothetical protein YP_962274.1 983534 D 351745 CDS YP_962275.1 120597701 4658363 complement(984424..985338) 1 NC_008750.1 PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: son:SO3748 LysM domain protein; ErfK/YbiS/YcfS/YnhG family protein 985338 4658363 Sputw3181_0871 Shewanella sp. W3-18-1 ErfK/YbiS/YcfS/YnhG family protein YP_962275.1 984424 R 351745 CDS YP_962276.1 120597702 4658412 complement(985510..987063) 1 NC_008750.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 987063 4658412 Sputw3181_0872 Shewanella sp. W3-18-1 anaerobic nitric oxide reductase transcriptional regulator YP_962276.1 985510 R 351745 CDS YP_962277.1 120597703 4658415 complement(987290..989575) 1 NC_008750.1 KEGG: shm:Shewmr7_0883 putative nitric oxide reductase (subunit B) transmembrane protein; putative nitric oxide reductase (subunit B) transmembrane protein 989575 4658415 Sputw3181_0873 Shewanella sp. W3-18-1 putative nitric oxide reductase (subunit B) transmembrane protein YP_962277.1 987290 R 351745 CDS YP_962278.1 120597704 4658343 990187..991911 1 NC_008750.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 991911 4658343 Sputw3181_0874 Shewanella sp. W3-18-1 potassium/proton antiporter YP_962278.1 990187 D 351745 CDS YP_962279.1 120597705 4657798 complement(991978..992850) 1 NC_008750.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: son:SO3746 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 992850 4657798 Sputw3181_0875 Shewanella sp. W3-18-1 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_962279.1 991978 R 351745 CDS YP_962280.1 120597706 4657803 993008..994438 1 NC_008750.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 994438 4657803 Sputw3181_0876 Shewanella sp. W3-18-1 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_962280.1 993008 D 351745 CDS YP_962281.1 120597707 4657819 994435..995262 1 NC_008750.1 KEGG: son:SO3744 hypothetical protein; hypothetical protein 995262 4657819 Sputw3181_0877 Shewanella sp. W3-18-1 hypothetical protein YP_962281.1 994435 D 351745 CDS YP_962282.1 120597708 4657824 995415..995894 1 NC_008750.1 PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_0888 transcriptional regulator, TetR family; TetR family transcriptional regulator 995894 4657824 Sputw3181_0878 Shewanella sp. W3-18-1 TetR family transcriptional regulator YP_962282.1 995415 D 351745 CDS YP_962283.1 120597709 4657867 complement(996002..997486) 1 NC_008750.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 997486 pntB 4657867 pntB Shewanella sp. W3-18-1 pyridine nucleotide transhydrogenase YP_962283.1 996002 R 351745 CDS YP_962284.1 120597710 4657875 complement(997498..999024) 1 NC_008750.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 999024 pntA 4657875 pntA Shewanella sp. W3-18-1 NAD(P) transhydrogenase subunit alpha YP_962284.1 997498 R 351745 CDS YP_962285.1 120597711 4657895 999445..1001244 1 NC_008750.1 TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: she:Shewmr4_3080 sulfite reductase (NADPH) flavoprotein, alpha chain; sulfite reductase (NADPH) flavoprotein, alpha chain 1001244 4657895 Sputw3181_0881 Shewanella sp. W3-18-1 sulfite reductase (NADPH) flavoprotein, alpha chain YP_962285.1 999445 D 351745 CDS YP_962286.1 120597712 4657907 1001344..1003041 1 NC_008750.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 1003041 4657907 Sputw3181_0882 Shewanella sp. W3-18-1 sulfite reductase subunit beta YP_962286.1 1001344 D 351745 CDS YP_962287.1 120597713 4657910 1003034..1003816 1 NC_008750.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 1003816 4657910 Sputw3181_0883 Shewanella sp. W3-18-1 phosphoadenosine phosphosulfate reductase YP_962287.1 1003034 D 351745 CDS YP_962288.1 120597714 4657938 1004397..1005182 1 NC_008750.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 1005182 mtgA 4657938 mtgA Shewanella sp. W3-18-1 monofunctional biosynthetic peptidoglycan transglycosylase YP_962288.1 1004397 D 351745 CDS YP_962289.1 120597715 4657975 1005438..1007174 1 NC_008750.1 KEGG: son:SO3733 hypothetical protein; hypothetical protein 1007174 4657975 Sputw3181_0885 Shewanella sp. W3-18-1 hypothetical protein YP_962289.1 1005438 D 351745 CDS YP_962290.1 120597716 4658061 complement(1007291..1007476) 1 NC_008750.1 KEGG: shm:Shewmr7_3211 hypothetical protein; hypothetical protein 1007476 4658061 Sputw3181_0886 Shewanella sp. W3-18-1 hypothetical protein YP_962290.1 1007291 R 351745 CDS YP_962291.1 120597717 4658085 complement(1007561..1008982) 1 NC_008750.1 KEGG: son:SO0975 hypothetical protein; hypothetical protein 1008982 4658085 Sputw3181_0887 Shewanella sp. W3-18-1 hypothetical protein YP_962291.1 1007561 R 351745 CDS YP_962292.1 120597718 4658115 complement(1009210..1009635) 1 NC_008750.1 PFAM: OsmC family protein; KEGG: shm:Shewmr7_3209 OsmC family protein; OsmC family protein 1009635 4658115 Sputw3181_0888 Shewanella sp. W3-18-1 OsmC family protein YP_962292.1 1009210 R 351745 CDS YP_962293.1 120597719 4658185 1009770..1010276 1 NC_008750.1 PFAM: regulatory protein, MarR; KEGG: she:Shewmr4_0815 transcriptional regulator, MarR family; MarR family transcriptional regulator 1010276 4658185 Sputw3181_0889 Shewanella sp. W3-18-1 MarR family transcriptional regulator YP_962293.1 1009770 D 351745 CDS YP_962294.1 120597720 4657749 1010382..1011557 1 NC_008750.1 PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_3207 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1011557 4657749 Sputw3181_0890 Shewanella sp. W3-18-1 FAD dependent oxidoreductase YP_962294.1 1010382 D 351745 CDS YP_962295.1 120597721 4658264 1011634..1012803 1 NC_008750.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 1012803 rumB 4658264 rumB Shewanella sp. W3-18-1 23S rRNA methyluridine methyltransferase YP_962295.1 1011634 D 351745 CDS YP_962296.1 120597722 4657753 1012932..1014083 1 NC_008750.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: she:Shewmr4_0823 chromate transporter, chromate ion transporter (CHR) family; chromate transporter 1014083 4657753 Sputw3181_0892 Shewanella sp. W3-18-1 chromate transporter YP_962296.1 1012932 D 351745 CDS YP_962297.1 120597723 4658281 1014219..1015883 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: shm:Shewmr7_3199 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1015883 4658281 Sputw3181_0893 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_962297.1 1014219 D 351745 CDS YP_962298.1 120597724 4658293 complement(1015959..1020233) 1 NC_008750.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: shm:Shewmr7_3198 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 1020233 4658293 Sputw3181_0894 Shewanella sp. W3-18-1 formate dehydrogenase subunit alpha YP_962298.1 1015959 R 351745 CDS YP_962299.1 120597725 4658455 1020770..1021828 1 NC_008750.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: shm:Shewmr7_3197 peptide chain release factor 2; peptide chain release factor 2 1021828 4658455 Sputw3181_0895 Shewanella sp. W3-18-1 peptide chain release factor 2 YP_962299.1 1020770 D 351745 CDS YP_962300.1 120597726 4658429 1021858..1023360 1 NC_008750.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1023360 lysS 4658429 lysS Shewanella sp. W3-18-1 lysyl-tRNA synthetase YP_962300.1 1021858 D 351745 CDS YP_962301.1 120597727 4658340 complement(1023471..1023710) 1 NC_008750.1 KEGG: son:SO0994 hypothetical protein; hypothetical protein 1023710 4658340 Sputw3181_0897 Shewanella sp. W3-18-1 hypothetical protein YP_962301.1 1023471 R 351745 CDS YP_962302.1 120597728 4661332 1024272..1025240 1 NC_008750.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 1025240 pbpG 4661332 pbpG Shewanella sp. W3-18-1 D-alanyl-D-alanine endopeptidase YP_962302.1 1024272 D 351745 CDS YP_962303.1 120597729 4657771 complement(1025295..1026860) 1 NC_008750.1 PFAM: peptidase S41; KEGG: she:Shewmr4_3075 hypothetical protein; peptidase S41 1026860 4657771 Sputw3181_0899 Shewanella sp. W3-18-1 peptidase S41 YP_962303.1 1025295 R 351745 CDS YP_962304.1 120597730 4658345 complement(1027102..1027983) 1 NC_008750.1 PFAM: phospholipase A1; KEGG: shm:Shewmr7_0898 phospholipase A(1); phospholipase A(1) 1027983 4658345 Sputw3181_0900 Shewanella sp. W3-18-1 phospholipase A(1) YP_962304.1 1027102 R 351745 CDS YP_962305.1 120597731 4658418 1028422..1029255 1 NC_008750.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: shm:Shewmr7_0899 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 1029255 4658418 Sputw3181_0901 Shewanella sp. W3-18-1 uroporphyrin-III C-methyltransferase YP_962305.1 1028422 D 351745 CDS YP_962306.1 120597732 4658383 1029321..1030229 1 NC_008750.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1030229 4658383 Sputw3181_0902 Shewanella sp. W3-18-1 sulfate adenylyltransferase subunit 2 YP_962306.1 1029321 D 351745 CDS YP_962307.1 120597733 4658347 1030312..1031754 1 NC_008750.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 1031754 cysN 4658347 cysN Shewanella sp. W3-18-1 sulfate adenylyltransferase subunit 1 YP_962307.1 1030312 D 351745 CDS YP_962308.1 120597734 4658365 1031758..1033482 1 NC_008750.1 PFAM: Citrate transporter; TrkA-C domain protein; KEGG: shm:Shewmr7_0902 TrkA-C domain protein; TrkA domain-containing protein 1033482 4658365 Sputw3181_0904 Shewanella sp. W3-18-1 TrkA domain-containing protein YP_962308.1 1031758 D 351745 CDS YP_962309.1 120597735 4658558 1033547..1034164 1 NC_008750.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 1034164 4658558 Sputw3181_0905 Shewanella sp. W3-18-1 adenylylsulfate kinase YP_962309.1 1033547 D 351745 CDS YP_962310.1 120597736 4658956 complement(1034222..1035061) 1 NC_008750.1 KEGG: shm:Shewmr7_0904 hypothetical protein; hypothetical protein 1035061 4658956 Sputw3181_0906 Shewanella sp. W3-18-1 hypothetical protein YP_962310.1 1034222 R 351745 CDS YP_962311.1 120597737 4658968 1035530..1036051 1 NC_008750.1 KEGG: shm:Shewmr7_0906 protoporphyrinogen oxidase; protoporphyrinogen oxidase 1036051 4658968 Sputw3181_0907 Shewanella sp. W3-18-1 protoporphyrinogen oxidase YP_962311.1 1035530 D 351745 CDS YP_962312.1 120597738 4658972 1036085..1036630 1 NC_008750.1 KEGG: son:SO3719 hypothetical protein; hypothetical protein 1036630 4658972 Sputw3181_0908 Shewanella sp. W3-18-1 hypothetical protein YP_962312.1 1036085 D 351745 CDS YP_962313.1 120597739 4658981 complement(1036679..1037440) 1 NC_008750.1 PFAM: DSBA oxidoreductase; KEGG: shm:Shewmr7_0909 DsbA oxidoreductase; DSBA oxidoreductase 1037440 4658981 Sputw3181_0909 Shewanella sp. W3-18-1 DSBA oxidoreductase YP_962313.1 1036679 R 351745 CDS YP_962314.1 120597740 4659004 complement(1037744..1038388) 1 NC_008750.1 PFAM: heat shock protein DnaJ domain protein; KEGG: shm:Shewmr7_0910 heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 1038388 4659004 Sputw3181_0910 Shewanella sp. W3-18-1 heat shock protein DnaJ domain-containing protein YP_962314.1 1037744 R 351745 CDS YP_962315.1 120597741 4659039 complement(1038700..1039353) 1 NC_008750.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 1039353 4659039 Sputw3181_0911 Shewanella sp. W3-18-1 dihydropteridine reductase YP_962315.1 1038700 R 351745 CDS YP_962316.1 120597742 4659085 1039485..1039646 1 NC_008750.1 KEGG: son:SO1508 hypothetical protein; hypothetical protein 1039646 4659085 Sputw3181_0912 Shewanella sp. W3-18-1 hypothetical protein YP_962316.1 1039485 D 351745 CDS YP_962317.1 120597743 4658967 1039706..1040080 1 NC_008750.1 KEGG: rba:RB954 hypothetical protein; hypothetical protein 1040080 4658967 Sputw3181_0913 Shewanella sp. W3-18-1 hypothetical protein YP_962317.1 1039706 D 351745 CDS YP_962318.1 120597744 4658973 1040253..1040564 1 NC_008750.1 KEGG: pfl:PFL_3339 hypothetical protein; hypothetical protein 1040564 4658973 Sputw3181_0914 Shewanella sp. W3-18-1 hypothetical protein YP_962318.1 1040253 D 351745 CDS YP_962319.1 120597745 4658996 1040680..1041417 1 NC_008750.1 hypothetical protein 1041417 4658996 Sputw3181_0915 Shewanella sp. W3-18-1 hypothetical protein YP_962319.1 1040680 D 351745 CDS YP_962320.1 120597746 4658984 complement(1041897..1042622) 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_0917 ABC transporter related; ABC transporter-like protein 1042622 4658984 Sputw3181_0916 Shewanella sp. W3-18-1 ABC transporter-like protein YP_962320.1 1041897 R 351745 CDS YP_962321.1 120597747 4658658 complement(1042615..1043295) 1 NC_008750.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1043 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 1043295 4658658 Sputw3181_0917 Shewanella sp. W3-18-1 polar amino acid ABC transporter inner membrane subunit YP_962321.1 1042615 R 351745 CDS YP_962322.1 120597748 4658671 complement(1043303..1044037) 1 NC_008750.1 PFAM: extracellular solute-binding protein, family 3; KEGG: shm:Shewmr7_0919 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1044037 4658671 Sputw3181_0918 Shewanella sp. W3-18-1 extracellular solute-binding protein YP_962322.1 1043303 R 351745 CDS YP_962323.1 120597749 4658419 complement(1044464..1045354) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1046 transcriptional regulator, LysR family; LysR family transcriptional regulator 1045354 4658419 Sputw3181_0919 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_962323.1 1044464 R 351745 CDS YP_962324.1 120597750 4658391 1045477..1045911 1 NC_008750.1 PFAM: LrgA family protein; KEGG: shm:Shewmr7_0922 LrgA family protein; LrgA family protein 1045911 4658391 Sputw3181_0920 Shewanella sp. W3-18-1 LrgA family protein YP_962324.1 1045477 D 351745 CDS YP_962325.1 120597751 4658716 1045914..1046633 1 NC_008750.1 PFAM: LrgB family protein; KEGG: shm:Shewmr7_0923 LrgB family protein; LrgB family protein 1046633 4658716 Sputw3181_0921 Shewanella sp. W3-18-1 LrgB family protein YP_962325.1 1045914 D 351745 CDS YP_962326.1 120597752 4658389 1046781..1047284 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1049 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1047284 4658389 Sputw3181_0922 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_962326.1 1046781 D 351745 CDS YP_962327.1 120597753 4658724 1047397..1048869 1 NC_008750.1 PFAM: carbon starvation protein CstA; KEGG: shm:Shewmr7_0925 carbon starvation protein CstA; carbon starvation protein CstA 1048869 4658724 Sputw3181_0923 Shewanella sp. W3-18-1 carbon starvation protein CstA YP_962327.1 1047397 D 351745 CDS YP_962328.1 120597754 4658726 1049026..1050810 1 NC_008750.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 1050810 mdoD 4658726 mdoD Shewanella sp. W3-18-1 glucan biosynthesis protein D YP_962328.1 1049026 D 351745 CDS YP_962329.1 120597755 4658760 complement(1050883..1051611) 1 NC_008750.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 1051611 4658760 Sputw3181_0925 Shewanella sp. W3-18-1 glutamine amidotransferase YP_962329.1 1050883 R 351745 CDS YP_962330.1 120597756 4658585 1051695..1052537 1 NC_008750.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: vpa:VPA1697 putative transcriptional regulator; helix-turn-helix domain-containing protein 1052537 4658585 Sputw3181_0926 Shewanella sp. W3-18-1 helix-turn-helix domain-containing protein YP_962330.1 1051695 D 351745 CDS YP_962331.1 120597757 4658790 1052749..1054218 1 NC_008750.1 PFAM: phosphate transporter; KEGG: shm:Shewmr7_0927 phosphate transporter; phosphate transporter 1054218 4658790 Sputw3181_0927 Shewanella sp. W3-18-1 phosphate transporter YP_962331.1 1052749 D 351745 CDS YP_962332.1 120597758 4658796 complement(1054428..1055324) 1 NC_008750.1 PFAM: protein of unknown function DUF72; KEGG: shm:Shewmr7_0928 protein of unknown function DUF72; hypothetical protein 1055324 4658796 Sputw3181_0928 Shewanella sp. W3-18-1 hypothetical protein YP_962332.1 1054428 R 351745 CDS YP_962333.1 120597759 4658810 1055718..1057145 1 NC_008750.1 KEGG: shm:Shewmr7_0929 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1057145 4658810 Sputw3181_0929 Shewanella sp. W3-18-1 PAS/PAC sensor-containing diguanylate cyclase YP_962333.1 1055718 D 351745 CDS YP_962334.1 120597760 4658815 complement(1057273..1058967) 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: son:SO1056 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1058967 4658815 Sputw3181_0930 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_962334.1 1057273 R 351745 CDS YP_962335.1 120597761 4658843 complement(1058980..1060590) 1 NC_008750.1 KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 1060590 4658843 Sputw3181_0931 Shewanella sp. W3-18-1 IS4 family transposase YP_962335.1 1058980 R 351745 CDS YP_962336.1 120597762 4658616 complement(1060687..1060932) 1 NC_008750.1 KEGG: shm:Shewmr7_0930 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1060932 4658616 Sputw3181_0932 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_962336.1 1060687 R 351745 CDS YP_962337.1 120597763 4658908 complement(1061142..1063775) 1 NC_008750.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: shm:Shewmr7_0932 aminopeptidase N; aminopeptidase N 1063775 4658908 Sputw3181_0933 Shewanella sp. W3-18-1 aminopeptidase N YP_962337.1 1061142 R 351745 CDS YP_962338.1 120597764 4658921 complement(1064032..1064637) 1 NC_008750.1 TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: shm:Shewmr7_0935 hypothetical protein; membrane lipoprotein lipid attachment site 1064637 4658921 Sputw3181_0934 Shewanella sp. W3-18-1 membrane lipoprotein lipid attachment site YP_962338.1 1064032 R 351745 CDS YP_962339.1 120597765 4658991 complement(1064695..1066098) 1 NC_008750.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO1061 TPR domain protein; hypothetical protein 1066098 4658991 Sputw3181_0935 Shewanella sp. W3-18-1 hypothetical protein YP_962339.1 1064695 R 351745 CDS YP_962340.1 120597766 4659006 complement(1066098..1066643) 1 NC_008750.1 KEGG: she:Shewmr4_3037 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 1066643 4659006 Sputw3181_0936 Shewanella sp. W3-18-1 peptide deformylase YP_962340.1 1066098 R 351745 CDS YP_962341.1 120597767 4659067 complement(1066697..1066909) 1 NC_008750.1 PFAM: SlyX family protein; KEGG: she:Shewmr4_3036 SlyX family protein; SlyX family protein 1066909 4659067 Sputw3181_0937 Shewanella sp. W3-18-1 SlyX family protein YP_962341.1 1066697 R 351745 CDS YP_962342.1 120597768 4659078 complement(1066919..1067869) 1 NC_008750.1 PFAM: WD-40 repeat protein; KEGG: son:SO1064 hypothetical WD domain protein; WD-40 repeat-containing protein 1067869 4659078 Sputw3181_0938 Shewanella sp. W3-18-1 WD-40 repeat-containing protein YP_962342.1 1066919 R 351745 CDS YP_962343.1 120597769 4659561 1068024..1068794 1 NC_008750.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: she:Shewmr4_3034 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 1068794 4659561 Sputw3181_0939 Shewanella sp. W3-18-1 peptidylprolyl isomerase, FKBP-type YP_962343.1 1068024 D 351745 CDS YP_962344.1 120597770 4659558 1069273..1071903 1 NC_008750.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: she:Shewmr4_3033 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1071903 4659558 Sputw3181_0940 Shewanella sp. W3-18-1 endonuclease/exonuclease/phosphatase YP_962344.1 1069273 D 351745 CDS YP_962345.1 120597771 4659564 1072130..1072567 1 NC_008750.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_0943 uncharacterized domain 1; hypothetical protein 1072567 4659564 Sputw3181_0941 Shewanella sp. W3-18-1 hypothetical protein YP_962345.1 1072130 D 351745 CDS YP_962346.1 120597772 4659568 1072683..1072910 1 NC_008750.1 KEGG: sdn:Sden_3091 hypothetical protein; hypothetical protein 1072910 4659568 Sputw3181_0942 Shewanella sp. W3-18-1 hypothetical protein YP_962346.1 1072683 D 351745 CDS YP_962347.1 120597773 4659575 1073144..1074139 1 NC_008750.1 PFAM: dienelactone hydrolase; KEGG: son:SO1006 dienelactone hydrolase family protein; dienelactone hydrolase 1074139 4659575 Sputw3181_0943 Shewanella sp. W3-18-1 dienelactone hydrolase YP_962347.1 1073144 D 351745 CDS YP_962348.1 120597774 4659578 1074340..1075062 1 NC_008750.1 PFAM: Abortive infection protein; KEGG: pat:Patl_0909 hypothetical protein; abortive infection protein 1075062 4659578 Sputw3181_0944 Shewanella sp. W3-18-1 abortive infection protein YP_962348.1 1074340 D 351745 CDS YP_962349.1 120597775 4659586 1075096..1075479 1 NC_008750.1 KEGG: son:SO3708 hypothetical protein; hypothetical protein 1075479 4659586 Sputw3181_0945 Shewanella sp. W3-18-1 hypothetical protein YP_962349.1 1075096 D 351745 CDS YP_962350.1 120597776 4659612 complement(1075489..1076952) 1 NC_008750.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rxy:Rxyl_0136 transcriptional regulator, GntR family; GntR family transcriptional regulator 1076952 4659612 Sputw3181_0946 Shewanella sp. W3-18-1 GntR family transcriptional regulator YP_962350.1 1075489 R 351745 CDS YP_962351.1 120597777 4659614 1077070..1077528 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mxa:MXAN_1748 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1077528 4659614 Sputw3181_0947 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_962351.1 1077070 D 351745 CDS YP_962352.1 120597778 4659624 complement(1077807..1079861) 1 NC_008750.1 KEGG: she:Shewmr4_0079 MORN variant repeat protein; MORN repeat-containing protein 1079861 4659624 Sputw3181_0948 Shewanella sp. W3-18-1 MORN repeat-containing protein YP_962352.1 1077807 R 351745 CDS YP_962353.1 120597779 4659618 complement(1080101..1080913) 1 NC_008750.1 KEGG: zmo:ZMO1197 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; glutamate racemase 1080913 4659618 Sputw3181_0949 Shewanella sp. W3-18-1 glutamate racemase YP_962353.1 1080101 R 351745 CDS YP_962354.1 120597780 4659640 complement(1081767..1082039) 1 NC_008750.1 hypothetical protein 1082039 4659640 Sputw3181_0950 Shewanella sp. W3-18-1 hypothetical protein YP_962354.1 1081767 R 351745 CDS YP_962355.1 120597781 4659649 complement(1083422..1083715) 1 NC_008750.1 KEGG: shm:Shewmr7_3165 hypothetical protein; hypothetical protein 1083715 4659649 Sputw3181_0951 Shewanella sp. W3-18-1 hypothetical protein YP_962355.1 1083422 R 351745 CDS YP_962356.1 120597782 4659647 complement(1084135..1085181) 1 NC_008750.1 KEGG: son:SO3696 hypothetical protein; hypothetical protein 1085181 4659647 Sputw3181_0952 Shewanella sp. W3-18-1 hypothetical protein YP_962356.1 1084135 R 351745 CDS YP_962357.1 120597783 4659661 complement(1085371..1086402) 1 NC_008750.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1086402 4659661 Sputw3181_0953 Shewanella sp. W3-18-1 dihydroorotase YP_962357.1 1085371 R 351745 CDS YP_962358.1 120597784 4659591 1086979..1088286 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: she:Shewmr4_0861 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1088286 4659591 Sputw3181_0954 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_962358.1 1086979 D 351745 CDS YP_962359.1 120597785 4659659 1088374..1088637 1 NC_008750.1 KEGG: shm:Shewmr7_3160 hypothetical protein; hypothetical protein 1088637 4659659 Sputw3181_0955 Shewanella sp. W3-18-1 hypothetical protein YP_962359.1 1088374 D 351745 CDS YP_962360.1 120597786 4659635 1088734..1089474 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3159 ABC transporter related; ABC transporter-like protein 1089474 4659635 Sputw3181_0956 Shewanella sp. W3-18-1 ABC transporter-like protein YP_962360.1 1088734 D 351745 CDS YP_962361.1 120597787 4659682 1089486..1090796 1 NC_008750.1 PFAM: protein of unknown function DUF214; KEGG: sdn:Sden_2849 protein of unknown function DUF214; hypothetical protein 1090796 4659682 Sputw3181_0957 Shewanella sp. W3-18-1 hypothetical protein YP_962361.1 1089486 D 351745 CDS YP_962362.1 120597788 4659690 1090807..1092006 1 NC_008750.1 PFAM: protein of unknown function DUF214; KEGG: sfr:Sfri_0900 protein of unknown function DUF214; hypothetical protein 1092006 4659690 Sputw3181_0958 Shewanella sp. W3-18-1 hypothetical protein YP_962362.1 1090807 D 351745 CDS YP_962363.1 120597789 4659157 1092118..1093575 1 NC_008750.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: she:Shewmr4_0866 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator 1093575 4659157 Sputw3181_0959 Shewanella sp. W3-18-1 two component, sigma54 specific, Fis family transcriptional regulator YP_962363.1 1092118 D 351745 CDS YP_962364.1 120597790 4659213 1093628..1095316 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3688 nitrogen regulation protein NtrY, putative; integral membrane sensor signal transduction histidine kinase 1095316 4659213 Sputw3181_0960 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_962364.1 1093628 D 351745 CDS YP_962365.1 120597791 4659218 1095612..1096022 1 NC_008750.1 KEGG: she:Shewmr4_0868 curli production assembly/transport component CsgE, putative; curli production assembly/transport component CsgE 1096022 4659218 Sputw3181_0961 Shewanella sp. W3-18-1 curli production assembly/transport component CsgE YP_962365.1 1095612 D 351745 CDS YP_962366.1 120597792 4659237 1096033..1096428 1 NC_008750.1 KEGG: she:Shewmr4_0869 curli production assembly/transport component CsgF, putative; curli production assembly/transport component CsgF 1096428 4659237 Sputw3181_0962 Shewanella sp. W3-18-1 curli production assembly/transport component CsgF YP_962366.1 1096033 D 351745 CDS YP_962367.1 120597793 4659243 1096428..1097234 1 NC_008750.1 PFAM: Curli production assembly/transport component CsgG; KEGG: shm:Shewmr7_3152 curli production assembly/transport component CsgG; curli production assembly/transport component CsgG 1097234 4659243 Sputw3181_0963 Shewanella sp. W3-18-1 curli production assembly/transport component CsgG YP_962367.1 1096428 D 351745 CDS YP_962368.1 120597794 4659247 complement(1097336..1097908) 1 NC_008750.1 PFAM: regulatory protein, TetR; KEGG: she:Shewmr4_0871 transcriptional regulator, TetR family; TetR family transcriptional regulator 1097908 4659247 Sputw3181_0964 Shewanella sp. W3-18-1 TetR family transcriptional regulator YP_962368.1 1097336 R 351745 CDS YP_962369.1 120597795 4659256 complement(1097959..1099383) 1 NC_008750.1 PFAM: aldehyde dehydrogenase; KEGG: shm:Shewmr7_3150 aldehyde dehydrogenase; aldehyde dehydrogenase 1099383 4659256 Sputw3181_0965 Shewanella sp. W3-18-1 aldehyde dehydrogenase YP_962369.1 1097959 R 351745 CDS YP_962370.1 120597796 4659264 1099606..1099989 1 NC_008750.1 KEGG: she:Shewmr4_0873 hypothetical protein; hypothetical protein 1099989 4659264 Sputw3181_0966 Shewanella sp. W3-18-1 hypothetical protein YP_962370.1 1099606 D 351745 CDS YP_962371.1 120597797 4659278 1100053..1100484 1 NC_008750.1 PFAM: UspA domain protein; KEGG: shm:Shewmr7_3148 UspA domain protein; UspA domain-containing protein 1100484 4659278 Sputw3181_0967 Shewanella sp. W3-18-1 UspA domain-containing protein YP_962371.1 1100053 D 351745 CDS YP_962372.1 120597798 4659282 complement(1100503..1101360) 1 NC_008750.1 KEGG: she:Shewmr4_0876 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1101360 4659282 Sputw3181_0968 Shewanella sp. W3-18-1 extracellular solute-binding protein YP_962372.1 1100503 R 351745 CDS YP_962373.1 120597799 4659302 1101700..1102035 1 NC_008750.1 KEGG: she:Shewmr4_0878 hypothetical protein; hypothetical protein 1102035 4659302 Sputw3181_0969 Shewanella sp. W3-18-1 hypothetical protein YP_962373.1 1101700 D 351745 CDS YP_962374.1 120597800 4659314 1102211..1103500 1 NC_008750.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: shm:Shewmr7_0989 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 1103500 4659314 Sputw3181_0970 Shewanella sp. W3-18-1 xanthine/uracil/vitamin C permease YP_962374.1 1102211 D 351745 CDS YP_962375.1 120597801 4659333 1103702..1104820 1 NC_008750.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1104820 4659333 Sputw3181_0971 Shewanella sp. W3-18-1 gamma-glutamyl kinase YP_962375.1 1103702 D 351745 CDS YP_962376.1 120597802 4659355 1104842..1106110 1 NC_008750.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1106110 proA 4659355 proA Shewanella sp. W3-18-1 gamma-glutamyl phosphate reductase YP_962376.1 1104842 D 351745 CDS YP_962377.1 120597803 4659394 complement(1106195..1106497) 1 NC_008750.1 KEGG: she:Shewmr4_0954 hypothetical protein; hypothetical protein 1106497 4659394 Sputw3181_0973 Shewanella sp. W3-18-1 hypothetical protein YP_962377.1 1106195 R 351745 CDS YP_962378.1 120597804 4659441 complement(1106625..1107101) 1 NC_008750.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: son:SO1124 conserved hypothetical protein TIGR00011; ybaK/ebsC protein 1107101 4659441 Sputw3181_0974 Shewanella sp. W3-18-1 ybaK/ebsC protein YP_962378.1 1106625 R 351745 CDS YP_962379.1 120597805 4659463 complement(1107239..1108174) 1 NC_008750.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: she:Shewmr4_0956 protein of unknown function DUF6, transmembrane; hypothetical protein 1108174 4659463 Sputw3181_0975 Shewanella sp. W3-18-1 hypothetical protein YP_962379.1 1107239 R 351745 CDS YP_962380.1 120597806 4659506 1108464..1110383 1 NC_008750.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1110383 dnaK 4659506 dnaK Shewanella sp. W3-18-1 molecular chaperone DnaK YP_962380.1 1108464 D 351745 CDS YP_962381.1 120597807 4659522 1110512..1111642 1 NC_008750.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1111642 4659522 Sputw3181_0977 Shewanella sp. W3-18-1 chaperone protein DnaJ YP_962381.1 1110512 D 351745 CDS YP_962382.1 120597808 4659524 complement(1111766..1113088) 1 NC_008750.1 KEGG: pfo:Pfl_4766 chemotaxis sensory transducer, PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 1113088 4659524 Sputw3181_0978 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_962382.1 1111766 R 351745 CDS YP_962383.1 120597809 4659151 1114141..1114671 1 NC_008750.1 KEGG: she:Shewmr4_0835 hypothetical protein; hypothetical protein 1114671 4659151 Sputw3181_0979 Shewanella sp. W3-18-1 hypothetical protein YP_962383.1 1114141 D 351745 CDS YP_962384.1 120597810 4659550 1114711..1116261 1 NC_008750.1 KEGG: sil:SPO1693 hypothetical protein; hypothetical protein 1116261 4659550 Sputw3181_0980 Shewanella sp. W3-18-1 hypothetical protein YP_962384.1 1114711 D 351745 CDS YP_962385.1 120597811 4659576 1116266..1117375 1 NC_008750.1 hypothetical protein 1117375 4659576 Sputw3181_0981 Shewanella sp. W3-18-1 hypothetical protein YP_962385.1 1116266 D 351745 CDS YP_962386.1 120597812 4659603 complement(1117821..1121555) 1 NC_008750.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 1121555 metH 4659603 metH Shewanella sp. W3-18-1 B12-dependent methionine synthase YP_962386.1 1117821 R 351745 CDS YP_962387.1 120597813 4659646 1121828..1122553 1 NC_008750.1 PFAM: Phosphoglycerate mutase; KEGG: she:Shewmr4_0839 phosphoglycerate mutase; phosphoglycerate mutase 1122553 4659646 Sputw3181_0983 Shewanella sp. W3-18-1 phosphoglycerate mutase YP_962387.1 1121828 D 351745 CDS YP_962388.1 120597814 4659693 1123060..1123941 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1033 iron-compound ABC transporter, ATP-binding protein, putative; ABC transporter-like protein 1123941 4659693 Sputw3181_0984 Shewanella sp. W3-18-1 ABC transporter-like protein YP_962388.1 1123060 D 351745 CDS YP_962389.1 120597815 4659662 1123941..1125068 1 NC_008750.1 PFAM: transport system permease protein; KEGG: she:Shewmr4_0841 transport system permease protein; transport system permease 1125068 4659662 Sputw3181_0985 Shewanella sp. W3-18-1 transport system permease YP_962389.1 1123941 D 351745 CDS YP_962390.1 120597816 4660229 1125147..1126199 1 NC_008750.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1126199 cobT 4660229 cobT Shewanella sp. W3-18-1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_962390.1 1125147 D 351745 CDS YP_962391.1 120597817 4660251 1126307..1127095 1 NC_008750.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1127095 cobS 4660251 cobS Shewanella sp. W3-18-1 cobalamin synthase YP_962391.1 1126307 D 351745 CDS YP_962392.1 120597818 4660260 1127092..1127703 1 NC_008750.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: shm:Shewmr7_3178 cobalbumin biosynthesis enzyme; cobalbumin biosynthesis protein 1127703 4660260 Sputw3181_0988 Shewanella sp. W3-18-1 cobalbumin biosynthesis protein YP_962392.1 1127092 D 351745 CDS YP_962393.1 120597819 4660262 1127793..1129382 1 NC_008750.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1129382 4660262 Sputw3181_0989 Shewanella sp. W3-18-1 cobyric acid synthase YP_962393.1 1127793 D 351745 CDS YP_962394.1 120597820 4660267 1129442..1130065 1 NC_008750.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1130065 4660267 Sputw3181_0990 Shewanella sp. W3-18-1 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_962394.1 1129442 D 351745 CDS YP_962395.1 120597821 4660265 1130771..1131634 1 NC_008750.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO2036 site-specific recombinase, phage integrase family; phage integrase family protein 1131634 4660265 Sputw3181_0991 Shewanella sp. W3-18-1 phage integrase family protein YP_962395.1 1130771 D 351745 CDS YP_962396.1 120597822 4660273 1131613..1132731 1 NC_008750.1 PFAM: putative transposase; KEGG: son:SO2212 transposase, IS91 family, putative; putative transposase 1132731 4660273 Sputw3181_0992 Shewanella sp. W3-18-1 putative transposase YP_962396.1 1131613 D 351745 CDS YP_962397.1 120597823 4660278 1133901..1134266 1 NC_008750.1 hypothetical protein 1134266 4660278 Sputw3181_0993 Shewanella sp. W3-18-1 hypothetical protein YP_962397.1 1133901 D 351745 CDS YP_962398.1 120597824 4660277 1135201..1136238 1 NC_008750.1 KEGG: shm:Shewmr7_3175 hypothetical protein; hypothetical protein 1136238 4660277 Sputw3181_0994 Shewanella sp. W3-18-1 hypothetical protein YP_962398.1 1135201 D 351745 CDS YP_962399.1 120597825 4660195 1136255..1137082 1 NC_008750.1 PFAM: periplasmic binding protein; KEGG: son:SO3709 ABC transporter, periplasmic substrate-binding protein, putative; periplasmic binding protein 1137082 4660195 Sputw3181_0995 Shewanella sp. W3-18-1 periplasmic binding protein YP_962399.1 1136255 D 351745 CDS YP_962400.1 120597826 4659858 complement(1137145..1138536) 1 NC_008750.1 PFAM: aldehyde dehydrogenase; KEGG: ppu:PP_2488 succinic-semialdehyde dehydrogenase, putative; aldehyde dehydrogenase 1138536 4659858 Sputw3181_0996 Shewanella sp. W3-18-1 aldehyde dehydrogenase YP_962400.1 1137145 R 351745 CDS YP_962401.1 120597827 4659873 complement(1138754..1139872) 1 NC_008750.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 1139872 gldA 4659873 gldA Shewanella sp. W3-18-1 glycerol dehydrogenase YP_962401.1 1138754 R 351745 CDS YP_962402.1 120597828 4659898 1140341..1141657 1 NC_008750.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_0998 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 1141657 4659898 Sputw3181_0998 Shewanella sp. W3-18-1 DEAD/DEAH box helicase YP_962402.1 1140341 D 351745 CDS YP_962403.1 120597829 4659630 1141757..1142566 1 NC_008750.1 PFAM: peptidase M48, Ste24p; KEGG: son:SO1137 hypothetical protein; peptidase M48, Ste24p 1142566 4659630 Sputw3181_0999 Shewanella sp. W3-18-1 peptidase M48, Ste24p YP_962403.1 1141757 D 351745 CDS YP_962404.1 120597830 4659585 1142695..1143312 1 NC_008750.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: she:Shewmr4_0963 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 1143312 4659585 Sputw3181_1000 Shewanella sp. W3-18-1 peptidylprolyl isomerase, FKBP-type YP_962404.1 1142695 D 351745 CDS YP_962405.1 120597831 4659599 1143385..1144197 1 NC_008750.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1144197 4659599 Sputw3181_1001 Shewanella sp. W3-18-1 dihydrodipicolinate reductase YP_962405.1 1143385 D 351745 CDS YP_962406.1 120597832 4659593 1144371..1145531 1 NC_008750.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1145531 4659593 Sputw3181_1002 Shewanella sp. W3-18-1 carbamoyl phosphate synthase small subunit YP_962406.1 1144371 D 351745 CDS YP_962407.1 120597833 4659915 1145559..1148783 1 NC_008750.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1148783 carB 4659915 carB Shewanella sp. W3-18-1 carbamoyl phosphate synthase large subunit YP_962407.1 1145559 D 351745 CDS YP_962408.1 120597834 4659581 1148927..1149637 1 NC_008750.1 PFAM: pseudouridine synthase; KEGG: sfr:Sfri_3001 pseudouridine synthase; pseudouridine synthase 1149637 4659581 Sputw3181_1004 Shewanella sp. W3-18-1 pseudouridine synthase YP_962408.1 1148927 D 351745 CDS YP_962409.1 120597835 4659583 complement(1149698..1150471) 1 NC_008750.1 KEGG: son:SO1143 hypothetical protein; hypothetical protein 1150471 4659583 Sputw3181_1005 Shewanella sp. W3-18-1 hypothetical protein YP_962409.1 1149698 R 351745 CDS YP_962410.1 120597836 4659552 complement(1150668..1151756) 1 NC_008750.1 PFAM: chemotaxis sensory transducer; KEGG: son:SO1144 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1151756 4659552 Sputw3181_1006 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_962410.1 1150668 R 351745 CDS YP_962411.1 120597837 4659936 complement(1152005..1153378) 1 NC_008750.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO1145 magnesium transporter; magnesium transporter 1153378 4659936 Sputw3181_1007 Shewanella sp. W3-18-1 magnesium transporter YP_962411.1 1152005 R 351745 CDS YP_962412.1 120597838 4659972 complement(1153398..1154105) 1 NC_008750.1 KEGG: son:SO1146 hypothetical protein; hypothetical protein 1154105 4659972 Sputw3181_1008 Shewanella sp. W3-18-1 hypothetical protein YP_962412.1 1153398 R 351745 CDS YP_962413.1 120597839 4659982 1154879..1155214 1 NC_008750.1 KEGG: son:SO1148 hypothetical protein; hypothetical protein 1155214 4659982 Sputw3181_1009 Shewanella sp. W3-18-1 hypothetical protein YP_962413.1 1154879 D 351745 CDS YP_962414.1 120597840 4659998 1155328..1156938 1 NC_008750.1 KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 1156938 4659998 Sputw3181_1010 Shewanella sp. W3-18-1 IS4 family transposase YP_962414.1 1155328 D 351745 CDS YP_962415.1 120597841 4660017 1156951..1157820 1 NC_008750.1 KEGG: she:Shewmr4_0969 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1157820 4660017 Sputw3181_1011 Shewanella sp. W3-18-1 endonuclease/exonuclease/phosphatase YP_962415.1 1156951 D 351745 CDS YP_962416.1 120597842 4660071 1158123..1159313 1 NC_008750.1 SMART: PUA domain containing protein; KEGG: son:SO1149 hypothetical SAM-dependent methyltransferase; PUA domain-containing protein 1159313 4660071 Sputw3181_1012 Shewanella sp. W3-18-1 PUA domain-containing protein YP_962416.1 1158123 D 351745 CDS YP_962417.1 120597843 4660076 complement(1159483..1160145) 1 NC_008750.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1160145 4660076 Sputw3181_1013 Shewanella sp. W3-18-1 ribose-5-phosphate isomerase A YP_962417.1 1159483 R 351745 CDS YP_962418.1 120597844 4660080 1160376..1161308 1 NC_008750.1 PFAM: protein of unknown function DUF808; KEGG: she:Shewmr4_0975 protein of unknown function DUF808; hypothetical protein 1161308 4660080 Sputw3181_1014 Shewanella sp. W3-18-1 hypothetical protein YP_962418.1 1160376 D 351745 CDS YP_962419.1 120597845 4660089 1161390..1162295 1 NC_008750.1 PFAM: 3'-5' exonuclease; KEGG: shm:Shewmr7_1014 3'-5' exonuclease; 3'-5' exonuclease 1162295 4660089 Sputw3181_1015 Shewanella sp. W3-18-1 3'-5' exonuclease YP_962419.1 1161390 D 351745 CDS YP_962420.1 120597846 4660095 1162494..1163423 1 NC_008750.1 KEGG: shm:Shewmr7_1015 hypothetical protein; hypothetical protein 1163423 4660095 Sputw3181_1016 Shewanella sp. W3-18-1 hypothetical protein YP_962420.1 1162494 D 351745 CDS YP_962421.1 120597847 4660106 complement(1163529..1163867) 1 NC_008750.1 PFAM: SEC-C motif domain protein; KEGG: ppr:PBPRA1441 hypothetical protein; SecC motif-containing protein 1163867 4660106 Sputw3181_1017 Shewanella sp. W3-18-1 SecC motif-containing protein YP_962421.1 1163529 R 351745 CDS YP_962422.1 120597848 4659058 complement(1164387..1164623) 1 NC_008750.1 KEGG: shm:Shewmr7_1016 phage integrase family protein; hypothetical protein 1164623 4659058 Sputw3181_1018 Shewanella sp. W3-18-1 hypothetical protein YP_962422.1 1164387 R 351745 CDS YP_962423.1 120597849 4659814 1164916..1165335 1 NC_008750.1 hypothetical protein 1165335 4659814 Sputw3181_1019 Shewanella sp. W3-18-1 hypothetical protein YP_962423.1 1164916 D 351745 CDS YP_962424.1 120597850 4660191 complement(1165470..1166090) 1 NC_008750.1 KEGG: son:SOA0063 ISSod8, transposase; ISSod8, transposase 1166090 4660191 Sputw3181_1020 Shewanella sp. W3-18-1 ISSod8, transposase YP_962424.1 1165470 R 351745 CDS YP_962425.1 120597851 4660270 1166293..1166583 1 NC_008750.1 KEGG: shm:Shewmr7_1043 hypothetical protein; hypothetical protein 1166583 4660270 Sputw3181_1021 Shewanella sp. W3-18-1 hypothetical protein YP_962425.1 1166293 D 351745 CDS YP_962426.1 120597852 4660258 1166669..1168813 1 NC_008750.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_0979 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1168813 4660258 Sputw3181_1022 Shewanella sp. W3-18-1 TonB-dependent siderophore receptor YP_962426.1 1166669 D 351745 CDS YP_962427.1 120597853 4660234 1168803..1170059 1 NC_008750.1 PFAM: protein of unknown function DUF1624; KEGG: she:Shewmr4_0980 hypothetical protein; hypothetical protein 1170059 4660234 Sputw3181_1023 Shewanella sp. W3-18-1 hypothetical protein YP_962427.1 1168803 D 351745 CDS YP_962428.1 120597854 4660337 complement(1170154..1170621) 1 NC_008750.1 PFAM: Ferritin, Dps family protein; KEGG: shm:Shewmr7_1046 ferritin, Dps family protein; Ferritin, Dps family protein 1170621 4660337 Sputw3181_1024 Shewanella sp. W3-18-1 Ferritin, Dps family protein YP_962428.1 1170154 R 351745 CDS YP_962429.1 120597855 4660900 1170829..1171179 1 NC_008750.1 KEGG: shm:Shewmr7_1047 hypothetical protein; hypothetical protein 1171179 4660900 Sputw3181_1025 Shewanella sp. W3-18-1 hypothetical protein YP_962429.1 1170829 D 351745 CDS YP_962430.1 120597856 4660906 1171203..1171700 1 NC_008750.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: son:SO1160 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 1171700 4660906 Sputw3181_1026 Shewanella sp. W3-18-1 ribosomal-protein-alanine acetyltransferase YP_962430.1 1171203 D 351745 CDS YP_962431.1 120597857 4660916 complement(1171770..1172735) 1 NC_008750.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1172735 4660916 Sputw3181_1027 Shewanella sp. W3-18-1 lipoyl synthase YP_962431.1 1171770 R 351745 CDS YP_962432.1 120597858 4660893 complement(1172732..1173385) 1 NC_008750.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 1173385 lipB 4660893 lipB Shewanella sp. W3-18-1 lipoate-protein ligase B YP_962432.1 1172732 R 351745 CDS YP_962433.1 120597859 4660940 complement(1173479..1173745) 1 NC_008750.1 PFAM: protein of unknown function DUF493; KEGG: shm:Shewmr7_1051 protein of unknown function DUF493; hypothetical protein 1173745 4660940 Sputw3181_1029 Shewanella sp. W3-18-1 hypothetical protein YP_962433.1 1173479 R 351745 CDS YP_962434.1 120597860 4660957 complement(1173865..1175040) 1 NC_008750.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: son:SO1164 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 1175040 4660957 Sputw3181_1030 Shewanella sp. W3-18-1 serine-type D-Ala-D-Ala carboxypeptidase YP_962434.1 1173865 R 351745 CDS YP_962435.1 120597861 4660974 complement(1175186..1176031) 1 NC_008750.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: she:Shewmr4_0988 rare lipoprotein A; rare lipoprotein A 1176031 4660974 Sputw3181_1031 Shewanella sp. W3-18-1 rare lipoprotein A YP_962435.1 1175186 R 351745 CDS YP_962436.1 120597862 4661031 complement(1176015..1177079) 1 NC_008750.1 TIGRFAM: lytic murein transglycosylase B; KEGG: shm:Shewmr7_1054 lytic murein transglycosylase B; lytic murein transglycosylase B 1177079 4661031 Sputw3181_1032 Shewanella sp. W3-18-1 lytic murein transglycosylase B YP_962436.1 1176015 R 351745 CDS YP_962437.1 120597863 4660946 complement(1177096..1178202) 1 NC_008750.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: shm:Shewmr7_1055 rod shape-determining protein RodA; rod shape-determining protein RodA 1178202 4660946 Sputw3181_1033 Shewanella sp. W3-18-1 rod shape-determining protein RodA YP_962437.1 1177096 R 351745 CDS YP_962438.1 120597864 4660429 complement(1178199..1180055) 1 NC_008750.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: shm:Shewmr7_1056 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 1180055 4660429 Sputw3181_1034 Shewanella sp. W3-18-1 peptidoglycan glycosyltransferase YP_962438.1 1178199 R 351745 CDS YP_962439.1 120597865 4660432 complement(1180117..1180587) 1 NC_008750.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 1180587 4660432 Sputw3181_1035 Shewanella sp. W3-18-1 rRNA large subunit methyltransferase YP_962439.1 1180117 R 351745 CDS YP_962440.1 120597866 4660442 complement(1180587..1180916) 1 NC_008750.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: shm:Shewmr7_1058 iojap-like protein; iojap family protein 1180916 4660442 Sputw3181_1036 Shewanella sp. W3-18-1 iojap family protein YP_962440.1 1180587 R 351745 CDS YP_962441.1 120597867 4660454 complement(1181024..1181671) 1 NC_008750.1 KEGG: shm:Shewmr7_1059 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 1181671 4660454 Sputw3181_1037 Shewanella sp. W3-18-1 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_962441.1 1181024 R 351745 CDS YP_962442.1 120597868 4660466 complement(1181681..1182712) 1 NC_008750.1 KEGG: son:SO1172 DNA polymerase III delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta 1182712 4660466 Sputw3181_1038 Shewanella sp. W3-18-1 DNA polymerase III subunit delta YP_962442.1 1181681 R 351745 CDS YP_962443.1 120597869 4660517 complement(1182765..1183259) 1 NC_008750.1 PFAM: Rare lipoprotein B; KEGG: shm:Shewmr7_1061 rare lipoprotein B; rare lipoprotein B 1183259 4660517 Sputw3181_1039 Shewanella sp. W3-18-1 rare lipoprotein B YP_962443.1 1182765 R 351745 CDS YP_962444.1 120597870 4660527 complement(1183280..1185859) 1 NC_008750.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1185859 leuS 4660527 leuS Shewanella sp. W3-18-1 leucyl-tRNA synthetase YP_962444.1 1183280 R 351745 CDS YP_962445.1 120597871 4660541 1185982..1186482 1 NC_008750.1 PFAM: protein of unknown function DUF1451; KEGG: shm:Shewmr7_1063 protein of unknown function DUF1451; hypothetical protein 1186482 4660541 Sputw3181_1041 Shewanella sp. W3-18-1 hypothetical protein YP_962445.1 1185982 D 351745 CDS YP_962446.1 120597872 4660546 complement(1186583..1187242) 1 NC_008750.1 KEGG: sde:Sde_2848 histidine kinase; histidine kinase 1187242 4660546 Sputw3181_1042 Shewanella sp. W3-18-1 histidine kinase YP_962446.1 1186583 R 351745 CDS YP_962447.1 120597873 4660548 complement(1187357..1187659) 1 NC_008750.1 KEGG: shm:Shewmr7_1064 methylation site containing protein; methylation site containing protein 1187659 4660548 Sputw3181_1043 Shewanella sp. W3-18-1 methylation site containing protein YP_962447.1 1187357 R 351745 CDS YP_962448.1 120597874 4660603 complement(1187711..1187860) 1 NC_008750.1 KEGG: son:SO1176 hypothetical protein; hypothetical protein 1187860 4660603 Sputw3181_1044 Shewanella sp. W3-18-1 hypothetical protein YP_962448.1 1187711 R 351745 CDS YP_962449.1 120597875 4660629 complement(1187871..1189427) 1 NC_008750.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 1189427 lnt 4660629 lnt Shewanella sp. W3-18-1 apolipoprotein N-acyltransferase YP_962449.1 1187871 R 351745 CDS YP_962450.1 120597876 4660668 complement(1189470..1190345) 1 NC_008750.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: shm:Shewmr7_1066 CBS domain containing protein; hypothetical protein 1190345 4660668 Sputw3181_1046 Shewanella sp. W3-18-1 hypothetical protein YP_962450.1 1189470 R 351745 CDS YP_962451.1 120597877 4660671 complement(1190385..1190846) 1 NC_008750.1 PFAM: protein of unknown function UPF0054; KEGG: she:Shewmr4_1002 protein of unknown function UPF0054; putative metalloprotease 1190846 4660671 Sputw3181_1047 Shewanella sp. W3-18-1 putative metalloprotease YP_962451.1 1190385 R 351745 CDS YP_962452.1 120597878 4660678 complement(1190836..1191885) 1 NC_008750.1 PFAM: PhoH family protein; KEGG: she:Shewmr4_1003 PhoH family protein; PhoH family protein 1191885 4660678 Sputw3181_1048 Shewanella sp. W3-18-1 PhoH family protein YP_962452.1 1190836 R 351745 CDS YP_962453.1 120597879 4660687 complement(1192132..1193556) 1 NC_008750.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1193556 4660687 Sputw3181_1049 Shewanella sp. W3-18-1 (dimethylallyl)adenosine tRNA methylthiotransferase YP_962453.1 1192132 R 351745 CDS YP_962454.1 120597880 4660717 1193917..1195158 1 NC_008750.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: shm:Shewmr7_1071 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 1195158 4660717 Sputw3181_1050 Shewanella sp. W3-18-1 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_962454.1 1193917 D 351745 CDS YP_962455.1 120597881 4660742 1195264..1195890 1 NC_008750.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1195890 4660742 Sputw3181_1051 Shewanella sp. W3-18-1 peptidyl-tRNA hydrolase YP_962455.1 1195264 D 351745 CDS YP_962456.1 120597882 4660774 1196025..1197116 1 NC_008750.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1197116 4660774 Sputw3181_1052 Shewanella sp. W3-18-1 GTP-dependent nucleic acid-binding protein EngD YP_962456.1 1196025 D 351745 CDS YP_962457.1 120597883 4658666 complement(1198354..1199004) 1 NC_008750.1 KEGG: son:SO1187 hypothetical protein; hypothetical protein 1199004 4658666 Sputw3181_1053 Shewanella sp. W3-18-1 hypothetical protein YP_962457.1 1198354 R 351745 CDS YP_962458.1 120597884 4660811 1199415..1200053 1 NC_008750.1 PFAM: PepSY-associated TM helix domain protein; KEGG: shm:Shewmr7_1075 hypothetical protein; PepSY-associated TM helix domain-containing protein 1200053 4660811 Sputw3181_1054 Shewanella sp. W3-18-1 PepSY-associated TM helix domain-containing protein YP_962458.1 1199415 D 351745 CDS YP_962459.1 120597885 4660817 1200069..1200581 1 NC_008750.1 KEGG: shm:Shewmr7_1076 lysozyme; hypothetical protein 1200581 4660817 Sputw3181_1055 Shewanella sp. W3-18-1 hypothetical protein YP_962459.1 1200069 D 351745 CDS YP_962460.1 120597886 4660827 1200619..1201437 1 NC_008750.1 KEGG: shm:Shewmr7_1077 hypothetical protein; hypothetical protein 1201437 4660827 Sputw3181_1056 Shewanella sp. W3-18-1 hypothetical protein YP_962460.1 1200619 D 351745 CDS YP_962461.1 120597887 4660848 1201737..1202213 1 NC_008750.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO1191 transcription elongation factor GreA; transcription elongation factor GreA 1202213 4660848 Sputw3181_1057 Shewanella sp. W3-18-1 transcription elongation factor GreA YP_962461.1 1201737 D 351745 CDS YP_962462.1 120597888 4660871 1202567..1203112 1 NC_008750.1 KEGG: son:SO1192 hypothetical protein; hypothetical protein 1203112 4660871 Sputw3181_1058 Shewanella sp. W3-18-1 hypothetical protein YP_962462.1 1202567 D 351745 CDS YP_962463.1 120597889 4660989 1203338..1205152 1 NC_008750.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1205152 secD 4660989 secD Shewanella sp. W3-18-1 preprotein translocase subunit SecD YP_962463.1 1203338 D 351745 CDS YP_962464.1 120597890 4660945 1205155..1206051 1 NC_008750.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1206051 secF 4660945 secF Shewanella sp. W3-18-1 preprotein translocase subunit SecF YP_962464.1 1205155 D 351745 CDS YP_962465.1 120597891 4660931 complement(1206130..1206429) 1 NC_008750.1 PFAM: protein of unknown function UPF0044; KEGG: shm:Shewmr7_1082 protein of unknown function UPF0044; hypothetical protein 1206429 4660931 Sputw3181_1061 Shewanella sp. W3-18-1 hypothetical protein YP_962465.1 1206130 R 351745 CDS YP_962466.1 120597892 4660927 1206520..1207149 1 NC_008750.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 1207149 rrmJ 4660927 rrmJ Shewanella sp. W3-18-1 23S rRNA methyltransferase J YP_962466.1 1206520 D 351745 CDS YP_962467.1 120597893 4661656 1207179..1209152 1 NC_008750.1 KEGG: she:Shewmr4_1019 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 1209152 4661656 Sputw3181_1063 Shewanella sp. W3-18-1 ATP-dependent metalloprotease FtsH YP_962467.1 1207179 D 351745 CDS YP_962468.1 120597894 4661365 1209364..1210197 1 NC_008750.1 KEGG: shm:Shewmr7_1085 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 1210197 4661365 Sputw3181_1064 Shewanella sp. W3-18-1 dihydropteroate synthase YP_962468.1 1209364 D 351745 CDS YP_962469.1 120597895 4661120 1210278..1211615 1 NC_008750.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1211615 glmM 4661120 glmM Shewanella sp. W3-18-1 phosphoglucosamine mutase YP_962469.1 1210278 D 351745 CDS YP_962470.1 120597896 4661104 1211810..1212592 1 NC_008750.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1212592 4661104 Sputw3181_1066 Shewanella sp. W3-18-1 triosephosphate isomerase YP_962470.1 1211810 D 351745 CDS YP_962471.1 120597897 4661868 1212594..1212929 1 NC_008750.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: son:SO1201 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 1212929 secG 4661868 secG Shewanella sp. W3-18-1 preprotein translocase subunit SecG YP_962471.1 1212594 D 351745 CDS YP_962472.1 120597898 4658048 1213361..1213816 1 NC_008750.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1213816 4658048 Sputw3181_1068 Shewanella sp. W3-18-1 hypothetical protein YP_962472.1 1213361 D 351745 CDS YP_962473.1 120597899 4661756 1213846..1215345 1 NC_008750.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1215345 nusA 4661756 nusA Shewanella sp. W3-18-1 transcription elongation factor NusA YP_962473.1 1213846 D 351745 CDS YP_962474.1 120597900 4661694 1215371..1218013 1 NC_008750.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1218013 infB 4661694 infB Shewanella sp. W3-18-1 translation initiation factor IF-2 YP_962474.1 1215371 D 351745 CDS YP_962475.1 120597901 4661645 1218077..1218526 1 NC_008750.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1218526 rbfA 4661645 rbfA Shewanella sp. W3-18-1 ribosome-binding factor A YP_962475.1 1218077 D 351745 CDS YP_962476.1 120597902 4661644 1218526..1219482 1 NC_008750.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1219482 truB 4661644 truB Shewanella sp. W3-18-1 tRNA pseudouridine synthase B YP_962476.1 1218526 D 351745 CDS YP_962477.1 120597903 4661746 1219611..1219880 1 NC_008750.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1219880 rpsO 4661746 rpsO Shewanella sp. W3-18-1 30S ribosomal protein S15 YP_962477.1 1219611 D 351745 CDS YP_962478.1 120597904 4660343 complement(1219957..1222005) 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: shm:Shewmr7_1095 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 1222005 4660343 Sputw3181_1074 Shewanella sp. W3-18-1 diguanylate cyclase/phosphodiesterase YP_962478.1 1219957 R 351745 CDS YP_962479.1 120597905 4661510 1222201..1224300 1 NC_008750.1 KEGG: son:SO1209 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 1224300 4661510 Sputw3181_1075 Shewanella sp. W3-18-1 polynucleotide phosphorylase/polyadenylase YP_962479.1 1222201 D 351745 CDS YP_962480.1 120597906 4661474 1224492..1225397 1 NC_008750.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 1225397 4661474 Sputw3181_1076 Shewanella sp. W3-18-1 lipoprotein NlpI YP_962480.1 1224492 D 351745 CDS YP_962481.1 120597907 4661424 complement(1226232..1227473) 1 NC_008750.1 PFAM: phage integrase family protein; KEGG: eci:UTI89_C5085 integrase-like protein; phage integrase family protein 1227473 4661424 Sputw3181_1077 Shewanella sp. W3-18-1 phage integrase family protein YP_962481.1 1226232 R 351745 CDS YP_962482.1 120597908 4661323 complement(1227475..1227744) 1 NC_008750.1 hypothetical protein 1227744 4661323 Sputw3181_1078 Shewanella sp. W3-18-1 hypothetical protein YP_962482.1 1227475 R 351745 CDS YP_962483.1 120597909 4661230 complement(1227747..1228721) 1 NC_008750.1 KEGG: dar:Daro_2530 hypothetical protein; hypothetical protein 1228721 4661230 Sputw3181_1079 Shewanella sp. W3-18-1 hypothetical protein YP_962483.1 1227747 R 351745 CDS YP_962484.1 120597910 4660666 complement(1228826..1229104) 1 NC_008750.1 hypothetical protein 1229104 4660666 Sputw3181_1080 Shewanella sp. W3-18-1 hypothetical protein YP_962484.1 1228826 R 351745 CDS YP_962485.1 120597911 4660389 1229186..1229629 1 NC_008750.1 hypothetical protein 1229629 4660389 Sputw3181_1081 Shewanella sp. W3-18-1 hypothetical protein YP_962485.1 1229186 D 351745 CDS YP_962486.1 120597912 4660623 complement(1229640..1230908) 1 NC_008750.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: stt:t4291 UV protection protein; DNA-directed DNA polymerase 1230908 4660623 Sputw3181_1082 Shewanella sp. W3-18-1 DNA-directed DNA polymerase YP_962486.1 1229640 R 351745 CDS YP_962487.1 120597913 4660610 complement(1230916..1231365) 1 NC_008750.1 PFAM: peptidase S24, S26A and S26B; KEGG: sdy:SDY_1220 UmuD; putative prophage repressor 1231365 4660610 Sputw3181_1083 Shewanella sp. W3-18-1 putative prophage repressor YP_962487.1 1230916 R 351745 CDS YP_962488.1 120597914 4660609 1232005..1232910 1 NC_008750.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: rfe:RF_p34 DNA polymerase III subunit epsilon; exonuclease 1232910 4660609 Sputw3181_1084 Shewanella sp. W3-18-1 exonuclease YP_962488.1 1232005 D 351745 CDS YP_962489.1 120597915 4660589 1232998..1233297 1 NC_008750.1 hypothetical protein 1233297 4660589 Sputw3181_1085 Shewanella sp. W3-18-1 hypothetical protein YP_962489.1 1232998 D 351745 CDS YP_962490.1 120597916 4660312 1233619..1234542 1 NC_008750.1 KEGG: shm:Shewmr7_1781 hypothetical protein; hypothetical protein 1234542 4660312 Sputw3181_1086 Shewanella sp. W3-18-1 hypothetical protein YP_962490.1 1233619 D 351745 CDS YP_962491.1 120597917 4660486 1234656..1237079 1 NC_008750.1 PFAM: N-6 DNA methylase; KEGG: shm:Shewmr7_1782 N-6 DNA methylase; N-6 DNA methylase 1237079 4660486 Sputw3181_1087 Shewanella sp. W3-18-1 N-6 DNA methylase YP_962491.1 1234656 D 351745 CDS YP_962492.1 120597918 4660481 1237086..1238375 1 NC_008750.1 KEGG: hit:NTHI0192 putative type I site-specific restriction-modification system, S subunit; putative type I site-specific restriction-modification system, S subunit 1238375 4660481 Sputw3181_1088 Shewanella sp. W3-18-1 putative type I site-specific restriction-modification system, S subunit YP_962492.1 1237086 D 351745 CDS YP_962493.1 120597919 4660092 1238385..1239548 1 NC_008750.1 KEGG: shm:Shewmr7_1784 hypothetical protein; hypothetical protein 1239548 4660092 Sputw3181_1089 Shewanella sp. W3-18-1 hypothetical protein YP_962493.1 1238385 D 351745 CDS YP_962494.1 120597920 4659834 1239563..1242580 1 NC_008750.1 PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_1787 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit 1242580 4659834 Sputw3181_1090 Shewanella sp. W3-18-1 type III restriction enzyme, res subunit YP_962494.1 1239563 D 351745 CDS YP_962495.1 120597921 4660064 1242603..1243688 1 NC_008750.1 KEGG: shm:Shewmr7_1788 ATP-binding region, ATPase-like protein; ATP-binding region, ATPase-like protein 1243688 4660064 Sputw3181_1091 Shewanella sp. W3-18-1 ATP-binding region, ATPase-like protein YP_962495.1 1242603 D 351745 CDS YP_962496.1 120597922 4659828 1243711..1244262 1 NC_008750.1 KEGG: shm:Shewmr7_1789 hypothetical protein; hypothetical protein 1244262 4659828 Sputw3181_1092 Shewanella sp. W3-18-1 hypothetical protein YP_962496.1 1243711 D 351745 CDS YP_962497.1 120597923 4659826 1244391..1244564 1 NC_008750.1 KEGG: shm:Shewmr7_1790 hypothetical protein; hypothetical protein 1244564 4659826 Sputw3181_1093 Shewanella sp. W3-18-1 hypothetical protein YP_962497.1 1244391 D 351745 CDS YP_962498.1 120597924 4660008 1244566..1244934 1 NC_008750.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: shm:Shewmr7_1791 membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 1244934 4660008 Sputw3181_1094 Shewanella sp. W3-18-1 membrane-bound metal-dependent hydrolase YP_962498.1 1244566 D 351745 CDS YP_962499.1 120597925 4659787 1244944..1246098 1 NC_008750.1 KEGG: shm:Shewmr7_1792 hypothetical protein; hypothetical protein 1246098 4659787 Sputw3181_1095 Shewanella sp. W3-18-1 hypothetical protein YP_962499.1 1244944 D 351745 CDS YP_962500.1 120597926 4659780 1246091..1247281 1 NC_008750.1 KEGG: shm:Shewmr7_1793 hypothetical protein; hypothetical protein 1247281 4659780 Sputw3181_1096 Shewanella sp. W3-18-1 hypothetical protein YP_962500.1 1246091 D 351745 CDS YP_962501.1 120597927 4659957 1247282..1247995 1 NC_008750.1 KEGG: shm:Shewmr7_1794 hypothetical protein; hypothetical protein 1247995 4659957 Sputw3181_1097 Shewanella sp. W3-18-1 hypothetical protein YP_962501.1 1247282 D 351745 CDS YP_962502.1 120597928 4659771 1248113..1250263 1 NC_008750.1 PFAM: Relaxase; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dar:Daro_2306 relaxase; metal dependent phosphohydrolase 1250263 4659771 Sputw3181_1098 Shewanella sp. W3-18-1 metal dependent phosphohydrolase YP_962502.1 1248113 D 351745 CDS YP_962503.1 120597929 4659679 1250312..1252135 1 NC_008750.1 KEGG: rfr:Rfer_4266 hypothetical protein; hypothetical protein 1252135 4659679 Sputw3181_1099 Shewanella sp. W3-18-1 hypothetical protein YP_962503.1 1250312 D 351745 CDS YP_962504.1 120597930 4659875 1252145..1252705 1 NC_008750.1 hypothetical protein 1252705 4659875 Sputw3181_1100 Shewanella sp. W3-18-1 hypothetical protein YP_962504.1 1252145 D 351745 CDS YP_962505.1 120597931 4659871 1252692..1253327 1 NC_008750.1 hypothetical protein 1253327 4659871 Sputw3181_1101 Shewanella sp. W3-18-1 hypothetical protein YP_962505.1 1252692 D 351745 CDS YP_962506.1 120597932 4659442 complement(1253354..1253941) 1 NC_008750.1 hypothetical protein 1253941 4659442 Sputw3181_1102 Shewanella sp. W3-18-1 hypothetical protein YP_962506.1 1253354 R 351745 CDS YP_962507.1 120597933 4659134 complement(1253955..1254194) 1 NC_008750.1 hypothetical protein 1254194 4659134 Sputw3181_1103 Shewanella sp. W3-18-1 hypothetical protein YP_962507.1 1253955 R 351745 CDS YP_962508.1 120597934 4659385 1254230..1254511 1 NC_008750.1 hypothetical protein 1254511 4659385 Sputw3181_1104 Shewanella sp. W3-18-1 hypothetical protein YP_962508.1 1254230 D 351745 CDS YP_962509.1 120597935 4661532 1254508..1255134 1 NC_008750.1 KEGG: eba:p1B162 sex pilus assembly protein; hypothetical protein 1255134 4661532 Sputw3181_1105 Shewanella sp. W3-18-1 hypothetical protein YP_962509.1 1254508 D 351745 CDS YP_962510.1 120597936 4659367 1255115..1256014 1 NC_008750.1 KEGG: sty:HCM1.71 putative periplasmic protein; hypothetical protein 1256014 4659367 Sputw3181_1106 Shewanella sp. W3-18-1 hypothetical protein YP_962510.1 1255115 D 351745 CDS YP_962511.1 120597937 4659322 1256017..1257306 1 NC_008750.1 PFAM: TraB pilus assembly family protein; KEGG: eba:p1B160 sex pilus assembly protein; TraB pilus assembly family protein 1257306 4659322 Sputw3181_1107 Shewanella sp. W3-18-1 TraB pilus assembly family protein YP_962511.1 1256017 D 351745 CDS YP_962512.1 120597938 4659108 1257303..1257953 1 NC_008750.1 KEGG: eba:p1B157 pilus assembly protein; hypothetical protein 1257953 4659108 Sputw3181_1108 Shewanella sp. W3-18-1 hypothetical protein YP_962512.1 1257303 D 351745 CDS YP_962513.1 120597939 4659287 1257950..1258339 1 NC_008750.1 hypothetical protein 1258339 4659287 Sputw3181_1109 Shewanella sp. W3-18-1 hypothetical protein YP_962513.1 1257950 D 351745 CDS YP_962514.1 120597940 4659101 1258748..1261243 1 NC_008750.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: xcv:XCV2336 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase 1261243 4659101 Sputw3181_1110 Shewanella sp. W3-18-1 heavy metal translocating P-type ATPase YP_962514.1 1258748 D 351745 CDS YP_962515.1 120597941 4659275 1261269..1261733 1 NC_008750.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: xcv:XCV2335 transcriptional regulator, MerR family; MerR family transcriptional regulator 1261733 4659275 Sputw3181_1111 Shewanella sp. W3-18-1 MerR family transcriptional regulator YP_962515.1 1261269 D 351745 CDS YP_962516.1 120597942 4657983 complement(1262840..1263595) 1 NC_008750.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family; IstB ATP binding domain-containing protein 1263595 4657983 Sputw3181_1113 Shewanella sp. W3-18-1 IstB ATP binding domain-containing protein YP_962516.1 1262840 R 351745 CDS YP_962517.1 120597943 4658857 complement(1263607..1265148) 1 NC_008750.1 PFAM: Integrase, catalytic region; KEGG: hch:HCH_06236 transposase, IS21 family; integrase catalytic subunit 1265148 4658857 Sputw3181_1114 Shewanella sp. W3-18-1 integrase catalytic subunit YP_962517.1 1263607 R 351745 CDS YP_962518.1 120597944 4658613 1265250..1265513 1 NC_008750.1 KEGG: bxe:Bxe_A4439 heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; hypothetical protein 1265513 4658613 Sputw3181_1115 Shewanella sp. W3-18-1 hypothetical protein YP_962518.1 1265250 D 351745 CDS YP_962519.1 120597945 4658804 1265548..1267053 1 NC_008750.1 PFAM: Integrase, catalytic region; KEGG: ecc:c5144 hypothetical protein; integrase catalytic subunit 1267053 4658804 Sputw3181_1116 Shewanella sp. W3-18-1 integrase catalytic subunit YP_962519.1 1265548 D 351745 CDS YP_962520.1 120597946 4658357 1267046..1267801 1 NC_008750.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gvi:gll4066 putative transposase; IstB ATP binding domain-containing protein 1267801 4658357 Sputw3181_1117 Shewanella sp. W3-18-1 IstB ATP binding domain-containing protein YP_962520.1 1267046 D 351745 CDS YP_962521.1 120597947 4658662 complement(1267824..1268675) 1 NC_008750.1 PFAM: Integrase, catalytic region; KEGG: vpa:VP1787 putative transposase; integrase catalytic subunit 1268675 4658662 Sputw3181_1118 Shewanella sp. W3-18-1 integrase catalytic subunit YP_962521.1 1267824 R 351745 CDS YP_962522.1 120597948 4658507 complement(1268690..1268974) 1 NC_008750.1 PFAM: transposase IS3/IS911 family protein; KEGG: ssn:SSO_P025 IS3 ORF1; transposase IS3/IS911 family protein 1268974 4658507 Sputw3181_1119 Shewanella sp. W3-18-1 transposase IS3/IS911 family protein YP_962522.1 1268690 R 351745 CDS YP_962523.1 120597949 4658168 1269595..1270020 1 NC_008750.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: xcv:XCV2335 transcriptional regulator, MerR family; MerR family transcriptional regulator 1270020 4658168 Sputw3181_1120 Shewanella sp. W3-18-1 MerR family transcriptional regulator YP_962523.1 1269595 D 351745 CDS YP_962524.1 120597950 4657697 1270783..1271136 1 NC_008750.1 PFAM: regulatory protein, ArsR; KEGG: xcv:XCV2337 transcriptional regulator, ArsR family; regulatory protein ArsR 1271136 4657697 Sputw3181_1122 Shewanella sp. W3-18-1 regulatory protein ArsR YP_962524.1 1270783 D 351745 CDS YP_962525.1 120597951 4657692 1272501..1273529 1 NC_008750.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: xcv:XCV2338 cobalt-zinc-cadmium resistance protein; cation diffusion facilitator family transporter 1273529 4657692 Sputw3181_1124 Shewanella sp. W3-18-1 cation diffusion facilitator family transporter YP_962525.1 1272501 D 351745 CDS YP_962526.1 120597952 4657720 1273574..1273852 1 NC_008750.1 PFAM: regulatory protein, ArsR; KEGG: xcv:XCV2337 transcriptional regulator, ArsR family; regulatory protein ArsR 1273852 4657720 Sputw3181_1125 Shewanella sp. W3-18-1 regulatory protein ArsR YP_962526.1 1273574 D 351745 CDS YP_962527.1 120597953 4658104 1274449..1277103 1 NC_008750.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: pcr:Pcryo_1347 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 1277103 4658104 Sputw3181_1126 Shewanella sp. W3-18-1 heavy metal translocating P-type ATPase YP_962527.1 1274449 D 351745 CDS YP_962528.1 120597954 4658086 complement(1277356..1278207) 1 NC_008750.1 PFAM: Integrase, catalytic region; KEGG: vpa:VP1787 putative transposase; integrase catalytic subunit 1278207 4658086 Sputw3181_1127 Shewanella sp. W3-18-1 integrase catalytic subunit YP_962528.1 1277356 R 351745 CDS YP_962529.1 120597955 4658067 complement(1278222..1278506) 1 NC_008750.1 PFAM: transposase IS3/IS911 family protein; KEGG: ssn:SSO_P025 IS3 ORF1; transposase IS3/IS911 family protein 1278506 4658067 Sputw3181_1128 Shewanella sp. W3-18-1 transposase IS3/IS911 family protein YP_962529.1 1278222 R 351745 CDS YP_962530.1 120597956 4658064 1278712..1280022 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sec:SC0394 putative cation efflux pump; RND family efflux transporter MFP subunit 1280022 4658064 Sputw3181_1129 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_962530.1 1278712 D 351745 CDS YP_962531.1 120597957 4658045 1280019..1283210 1 NC_008750.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: stm:STM0351 putative cation efflux system protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1283210 4658045 Sputw3181_1130 Shewanella sp. W3-18-1 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_962531.1 1280019 D 351745 CDS YP_962532.1 120597958 4658036 1283212..1284705 1 NC_008750.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sec:SC0393 outer membrane efflux protein-like protein; RND efflux system outer membrane lipoprotein 1284705 4658036 Sputw3181_1131 Shewanella sp. W3-18-1 RND efflux system outer membrane lipoprotein YP_962532.1 1283212 D 351745 CDS YP_962533.1 120597959 4661460 1285681..1285902 1 NC_008750.1 KEGG: rpd:RPD_2310 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux protein 1285902 4661460 Sputw3181_1135 Shewanella sp. W3-18-1 hydrophobe/amphiphile efflux protein YP_962533.1 1285681 D 351745 CDS YP_962534.1 120597960 4660944 1286021..1286191 1 NC_008750.1 KEGG: stm:STM0355 putative Copper chaperone; putative copper chaperone 1286191 4660944 Sputw3181_1136 Shewanella sp. W3-18-1 putative copper chaperone YP_962534.1 1286021 D 351745 CDS YP_962535.1 120597961 4657900 1287161..1287415 1 NC_008750.1 KEGG: ppr:PBPRA1824 hypothetical protein; hypothetical protein 1287415 4657900 Sputw3181_1138 Shewanella sp. W3-18-1 hypothetical protein YP_962535.1 1287161 D 351745 CDS YP_962536.1 120597962 4657950 1287626..1288318 1 NC_008750.1 KEGG: psp:PSPPH_1359 thiol:disulfide interchange protein DsbC; hypothetical protein 1288318 4657950 Sputw3181_1139 Shewanella sp. W3-18-1 hypothetical protein YP_962536.1 1287626 D 351745 CDS YP_962537.1 120597963 4657937 1288318..1290717 1 NC_008750.1 KEGG: eba:p1B154 sex pilus assembly protein; sex pilus assembly protein 1290717 4657937 Sputw3181_1140 Shewanella sp. W3-18-1 sex pilus assembly protein YP_962537.1 1288318 D 351745 CDS YP_962538.1 120597964 4657686 1290710..1291057 1 NC_008750.1 hypothetical protein 1291057 4657686 Sputw3181_1141 Shewanella sp. W3-18-1 hypothetical protein YP_962538.1 1290710 D 351745 CDS YP_962539.1 120597965 4657911 1291041..1291553 1 NC_008750.1 KEGG: sty:HCM1.98 putative pilin maturation protein; hypothetical protein 1291553 4657911 Sputw3181_1142 Shewanella sp. W3-18-1 hypothetical protein YP_962539.1 1291041 D 351745 CDS YP_962540.1 120597966 4657678 1291564..1292688 1 NC_008750.1 KEGG: sty:HCM1.99 plasmid transfer protein; hypothetical protein 1292688 4657678 Sputw3181_1143 Shewanella sp. W3-18-1 hypothetical protein YP_962540.1 1291564 D 351745 CDS YP_962541.1 120597967 4657868 1292672..1293700 1 NC_008750.1 PFAM: TraU family protein; KEGG: sty:HCM1.100 plasmid transfer protein; TraU family protein 1293700 4657868 Sputw3181_1144 Shewanella sp. W3-18-1 TraU family protein YP_962541.1 1292672 D 351745 CDS YP_962542.1 120597968 4657864 1293703..1297395 1 NC_008750.1 PFAM: Mating pair stabilisation TraN; KEGG: sty:HCM1.101 plasmid transfer protein; mating pair stabilisation TraN 1297395 4657864 Sputw3181_1145 Shewanella sp. W3-18-1 mating pair stabilisation TraN YP_962542.1 1293703 D 351745 CDS YP_962543.1 120597969 4657829 1297637..1297885 1 NC_008750.1 hypothetical protein 1297885 4657829 Sputw3181_1146 Shewanella sp. W3-18-1 hypothetical protein YP_962543.1 1297637 D 351745 CDS YP_962544.1 120597970 4659912 1297895..1300168 1 NC_008750.1 KEGG: bca:BCE_1701 hypothetical protein; hypothetical protein 1300168 4659912 Sputw3181_1147 Shewanella sp. W3-18-1 hypothetical protein YP_962544.1 1297895 D 351745 CDS YP_962545.1 120597971 4657785 1300188..1300706 1 NC_008750.1 hypothetical protein 1300706 4657785 Sputw3181_1148 Shewanella sp. W3-18-1 hypothetical protein YP_962545.1 1300188 D 351745 CDS YP_962546.1 120597972 4658400 complement(1300765..1301439) 1 NC_008750.1 PFAM: Endonuclease I; KEGG: sbo:SBO_3045 DNA-specific endonuclease I; deoxyribonuclease I 1301439 4658400 Sputw3181_1149 Shewanella sp. W3-18-1 deoxyribonuclease I YP_962546.1 1300765 R 351745 CDS YP_962547.1 120597973 4657885 complement(1301548..1302150) 1 NC_008750.1 hypothetical protein 1302150 4657885 Sputw3181_1150 Shewanella sp. W3-18-1 hypothetical protein YP_962547.1 1301548 R 351745 CDS YP_962548.1 120597974 4657976 1302518..1302844 1 NC_008750.1 hypothetical protein 1302844 4657976 Sputw3181_1151 Shewanella sp. W3-18-1 hypothetical protein YP_962548.1 1302518 D 351745 CDS YP_962549.1 120597975 4658143 1302860..1303279 1 NC_008750.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: abo:ABO_0430 single-stranded DNA-binding protein; single-strand binding protein 1303279 4658143 Sputw3181_1152 Shewanella sp. W3-18-1 single-strand binding protein YP_962549.1 1302860 D 351745 CDS YP_962550.1 120597976 4658223 1303359..1304177 1 NC_008750.1 TIGRFAM: phage recombination protein Bet; PFAM: RecT protein; KEGG: ecp:ECP_1141 bacteriophage recombination protein; phage recombination protein Bet 1304177 4658223 Sputw3181_1153 Shewanella sp. W3-18-1 phage recombination protein Bet YP_962550.1 1303359 D 351745 CDS YP_962551.1 120597977 4658267 1304464..1305480 1 NC_008750.1 KEGG: eba:p1B105 hypothetical protein; endonuclease-like phage-like protein 1305480 4658267 Sputw3181_1154 Shewanella sp. W3-18-1 endonuclease-like phage-like protein YP_962551.1 1304464 D 351745 CDS YP_962552.1 120597978 4658276 1305573..1306649 1 NC_008750.1 PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: dvu:DVU2037 CobS protein, putative; ATPase 1306649 4658276 Sputw3181_1155 Shewanella sp. W3-18-1 ATPase YP_962552.1 1305573 D 351745 CDS YP_962553.1 120597979 4658322 1306649..1307416 1 NC_008750.1 hypothetical protein 1307416 4658322 Sputw3181_1156 Shewanella sp. W3-18-1 hypothetical protein YP_962553.1 1306649 D 351745 CDS YP_962554.1 120597980 4658344 1307516..1308469 1 NC_008750.1 KEGG: lip:LI0186 hypothetical protein; hypothetical protein 1308469 4658344 Sputw3181_1157 Shewanella sp. W3-18-1 hypothetical protein YP_962554.1 1307516 D 351745 CDS YP_962555.1 120597981 4658453 1308531..1308971 1 NC_008750.1 hypothetical protein 1308971 4658453 Sputw3181_1158 Shewanella sp. W3-18-1 hypothetical protein YP_962555.1 1308531 D 351745 CDS YP_962556.1 120597982 4659009 1309041..1310696 1 NC_008750.1 PFAM: von Willebrand factor, type A; VWA containing CoxE family protein; KEGG: gsu:GSU2161 hypothetical protein; von Willebrand factor type A domain-containing protein 1310696 4659009 Sputw3181_1159 Shewanella sp. W3-18-1 von Willebrand factor type A domain-containing protein YP_962556.1 1309041 D 351745 CDS YP_962557.1 120597983 4658752 1310780..1311277 1 NC_008750.1 PFAM: DNA repair protein RadC; KEGG: vvy:VV2251 DNA repair protein; DNA repair protein RadC 1311277 4658752 Sputw3181_1160 Shewanella sp. W3-18-1 DNA repair protein RadC YP_962557.1 1310780 D 351745 CDS YP_962558.1 120597984 4658861 1311277..1311618 1 NC_008750.1 hypothetical protein 1311618 4658861 Sputw3181_1161 Shewanella sp. W3-18-1 hypothetical protein YP_962558.1 1311277 D 351745 CDS YP_962559.1 120597985 4658895 1311710..1312783 1 NC_008750.1 PFAM: Phage P4 alpha, zinc-binding domain protein; KEGG: dar:Daro_2694 hypothetical protein; phage P4 alpha zinc-binding domain-containing protein 1312783 4658895 Sputw3181_1162 Shewanella sp. W3-18-1 phage P4 alpha zinc-binding domain-containing protein YP_962559.1 1311710 D 351745 CDS YP_962560.1 120597986 4658943 1312873..1313580 1 NC_008750.1 hypothetical protein 1313580 4658943 Sputw3181_1163 Shewanella sp. W3-18-1 hypothetical protein YP_962560.1 1312873 D 351745 CDS YP_962561.1 120597987 4658988 1313953..1314363 1 NC_008750.1 KEGG: sdn:Sden_0608 hypothetical protein; hypothetical protein 1314363 4658988 Sputw3181_1164 Shewanella sp. W3-18-1 hypothetical protein YP_962561.1 1313953 D 351745 CDS YP_962562.1 120597988 4659002 complement(1314429..1317551) 1 NC_008750.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: sde:Sde_1955 cation efflux system protein; CzcA family heavy metal efflux protein 1317551 4659002 Sputw3181_1165 Shewanella sp. W3-18-1 CzcA family heavy metal efflux protein YP_962562.1 1314429 R 351745 CDS YP_962563.1 120597989 4658962 complement(1317561..1318580) 1 NC_008750.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sde:Sde_1956 hypothetical protein; biotin/lipoyl attachment domain-containing protein 1318580 4658962 Sputw3181_1166 Shewanella sp. W3-18-1 biotin/lipoyl attachment domain-containing protein YP_962563.1 1317561 R 351745 CDS YP_962564.1 120597990 4659265 complement(1318659..1319903) 1 NC_008750.1 PFAM: outer membrane efflux protein; KEGG: sde:Sde_1958 aconitate hydratase 1; outer membrane efflux protein 1319903 4659265 Sputw3181_1167 Shewanella sp. W3-18-1 outer membrane efflux protein YP_962564.1 1318659 R 351745 CDS YP_962565.1 120597991 4659449 complement(1319955..1320320) 1 NC_008750.1 hypothetical protein 1320320 4659449 Sputw3181_1168 Shewanella sp. W3-18-1 hypothetical protein YP_962565.1 1319955 R 351745 CDS YP_962566.1 120597992 4659478 complement(1320363..1321268) 1 NC_008750.1 KEGG: abo:ABO_1368 cation efflux system permease, putative; cation efflux system permease 1321268 4659478 Sputw3181_1169 Shewanella sp. W3-18-1 cation efflux system permease YP_962566.1 1320363 R 351745 CDS YP_962567.1 120597993 4659642 1321291..1321755 1 NC_008750.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: sde:Sde_1961 putative transcriptional regulator, MerR family; MerR family transcriptional regulator 1321755 4659642 Sputw3181_1170 Shewanella sp. W3-18-1 MerR family transcriptional regulator YP_962567.1 1321291 D 351745 CDS YP_962568.1 120597994 4660275 1321777..1322694 1 NC_008750.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tcx:Tcr_1429 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 1322694 4660275 Sputw3181_1171 Shewanella sp. W3-18-1 cation diffusion facilitator family transporter YP_962568.1 1321777 D 351745 CDS YP_962569.1 120597995 4659999 1322696..1323022 1 NC_008750.1 PFAM: protein of unknown function UPF0060; KEGG: abo:ABO_1373 hypothetical protein; hypothetical protein 1323022 4659999 Sputw3181_1172 Shewanella sp. W3-18-1 hypothetical protein YP_962569.1 1322696 D 351745 CDS YP_962570.1 120597996 4660108 1323458..1324402 1 NC_008750.1 KEGG: eba:p1B150 sex pilus assembly protein; sex pilus assembly protein 1324402 4660108 Sputw3181_1173 Shewanella sp. W3-18-1 sex pilus assembly protein YP_962570.1 1323458 D 351745 CDS YP_962571.1 120597997 4660134 1324405..1325793 1 NC_008750.1 PFAM: TraH family protein; KEGG: stm:PSLT100 pilus assembly protein; TraH family protein 1325793 4660134 Sputw3181_1174 Shewanella sp. W3-18-1 TraH family protein YP_962571.1 1324405 D 351745 CDS YP_962572.1 120597998 4660172 1325797..1329366 1 NC_008750.1 PFAM: TraG domain protein; KEGG: eba:p1B148 sex pilus assembly; TraG domain-containing protein 1329366 4660172 Sputw3181_1175 Shewanella sp. W3-18-1 TraG domain-containing protein YP_962572.1 1325797 D 351745 CDS YP_962573.1 120597999 4660236 complement(1329399..1329830) 1 NC_008750.1 hypothetical protein 1329830 4660236 Sputw3181_1176 Shewanella sp. W3-18-1 hypothetical protein YP_962573.1 1329399 R 351745 CDS YP_962574.1 120598000 4660289 complement(1329888..1330421) 1 NC_008750.1 KEGG: rfr:Rfer_3701 flagellar regulon master regulator subunit FlhC; hypothetical protein 1330421 4660289 Sputw3181_1177 Shewanella sp. W3-18-1 hypothetical protein YP_962574.1 1329888 R 351745 CDS YP_962575.1 120598001 4660537 complement(1330418..1330717) 1 NC_008750.1 hypothetical protein 1330717 4660537 Sputw3181_1178 Shewanella sp. W3-18-1 hypothetical protein YP_962575.1 1330418 R 351745 CDS YP_962576.1 120598002 4660828 complement(1330714..1331262) 1 NC_008750.1 PFAM: Lytic transglycosylase, catalytic; KEGG: net:Neut_0100 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic 1331262 4660828 Sputw3181_1179 Shewanella sp. W3-18-1 lytic transglycosylase, catalytic YP_962576.1 1330714 R 351745 CDS YP_962577.1 120598003 4660874 complement(1331249..1331911) 1 NC_008750.1 KEGG: tcx:Tcr_0792 hypothetical protein; hypothetical protein 1331911 4660874 Sputw3181_1180 Shewanella sp. W3-18-1 hypothetical protein YP_962577.1 1331249 R 351745 CDS YP_962578.1 120598004 4660904 complement(1331898..1332767) 1 NC_008750.1 hypothetical protein 1332767 4660904 Sputw3181_1181 Shewanella sp. W3-18-1 hypothetical protein YP_962578.1 1331898 R 351745 CDS YP_962579.1 120598005 4661003 complement(1332823..1333074) 1 NC_008750.1 KEGG: par:Psyc_0471 hypothetical protein; hypothetical protein 1333074 4661003 Sputw3181_1182 Shewanella sp. W3-18-1 hypothetical protein YP_962579.1 1332823 R 351745 CDS YP_962580.1 120598006 4660985 1333192..1333839 1 NC_008750.1 PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; bacteriophage CI repressor; KEGG: sfv:SFV_0270 putative prophage repressor CI; putative prophage repressor 1333839 4660985 Sputw3181_1183 Shewanella sp. W3-18-1 putative prophage repressor YP_962580.1 1333192 D 351745 CDS YP_962581.1 120598007 4661528 1334096..1335682 1 NC_008750.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1335682 prfC 4661528 prfC Shewanella sp. W3-18-1 peptide chain release factor 3 YP_962581.1 1334096 D 351745 CDS YP_962582.1 120598008 4661493 1335765..1335950 1 NC_008750.1 KEGG: sfr:Sfri_0998 hypothetical protein; hypothetical protein 1335950 4661493 Sputw3181_1185 Shewanella sp. W3-18-1 hypothetical protein YP_962582.1 1335765 D 351745 CDS YP_962583.1 120598009 4660749 1335961..1336725 1 NC_008750.1 PFAM: TatD-related deoxyribonuclease; KEGG: son:SO1213 hydrolase, TatD family; TatD-related deoxyribonuclease 1336725 4660749 Sputw3181_1186 Shewanella sp. W3-18-1 TatD-related deoxyribonuclease YP_962583.1 1335961 D 351745 CDS YP_962584.1 120598010 4660393 1336902..1338161 1 NC_008750.1 TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: shm:Shewmr7_1100 nucleoside transporter; nucleoside transporter 1338161 4660393 Sputw3181_1187 Shewanella sp. W3-18-1 nucleoside transporter YP_962584.1 1336902 D 351745 CDS YP_962585.1 120598011 4660611 1338521..1339378 1 NC_008750.1 PFAM: nucleoside-specific channel-forming protein, Tsx; KEGG: shm:Shewmr7_1101 nucleoside-specific channel-forming protein, Tsx; nucleoside-specific channel-forming protein, Tsx 1339378 4660611 Sputw3181_1188 Shewanella sp. W3-18-1 nucleoside-specific channel-forming protein, Tsx YP_962585.1 1338521 D 351745 CDS YP_962586.1 120598012 4660539 1339785..1340555 1 NC_008750.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1340555 4660539 Sputw3181_1189 Shewanella sp. W3-18-1 deoxyribose-phosphate aldolase YP_962586.1 1339785 D 351745 CDS YP_962587.1 120598013 4660478 1340740..1342071 1 NC_008750.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 1342071 deoA 4660478 deoA Shewanella sp. W3-18-1 thymidine phosphorylase YP_962587.1 1340740 D 351745 CDS YP_962588.1 120598014 4660063 1342081..1343295 1 NC_008750.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1343295 4660063 Sputw3181_1191 Shewanella sp. W3-18-1 phosphopentomutase YP_962588.1 1342081 D 351745 CDS YP_962589.1 120598015 4660009 1343387..1344097 1 NC_008750.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1344097 deoD 4660009 deoD Shewanella sp. W3-18-1 purine nucleoside phosphorylase YP_962589.1 1343387 D 351745 CDS YP_962590.1 120598016 4659946 complement(1344284..1345315) 1 NC_008750.1 KEGG: son:SO1222 membrane protein; membrane protein 1345315 4659946 Sputw3181_1193 Shewanella sp. W3-18-1 membrane protein YP_962590.1 1344284 R 351745 CDS YP_962591.1 120598017 4659900 1345380..1346375 1 NC_008750.1 KEGG: she:Shewmr4_1042 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB 1346375 4659900 Sputw3181_1194 Shewanella sp. W3-18-1 phosphoserine phosphatase SerB YP_962591.1 1345380 D 351745 CDS YP_962592.1 120598018 4659376 1346491..1347468 1 NC_008750.1 KEGG: shm:Shewmr7_1108 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 1347468 4659376 Sputw3181_1195 Shewanella sp. W3-18-1 alpha/beta hydrolase fold domain-containing protein YP_962592.1 1346491 D 351745 CDS YP_962593.1 120598019 4659338 complement(1347481..1349868) 1 NC_008750.1 PFAM: type IV pilus assembly PilZ; KEGG: she:Shewmr4_1044 type IV pilus assembly PilZ; type IV pilus assembly PilZ 1349868 4659338 Sputw3181_1196 Shewanella sp. W3-18-1 type IV pilus assembly PilZ YP_962593.1 1347481 R 351745 CDS YP_962594.1 120598020 4659092 1350025..1351389 1 NC_008750.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1351389 4659092 Sputw3181_1197 Shewanella sp. W3-18-1 DNA repair protein RadA YP_962594.1 1350025 D 351745 CDS YP_962595.1 120598021 4659164 complement(1351449..1351820) 1 NC_008750.1 PFAM: type IV pilus assembly PilZ; KEGG: shm:Shewmr7_1111 type IV pilus assembly PilZ; type IV pilus assembly PilZ 1351820 4659164 Sputw3181_1198 Shewanella sp. W3-18-1 type IV pilus assembly PilZ YP_962595.1 1351449 R 351745 CDS YP_962596.1 120598022 4658606 1352410..1353762 1 NC_008750.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO1236 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 1353762 4658606 Sputw3181_1199 Shewanella sp. W3-18-1 xanthine/uracil/vitamin C permease YP_962596.1 1352410 D 351745 CDS YP_962597.1 120598023 4658755 complement(1353875..1354306) 1 NC_008750.1 PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_1120 CBS domain containing protein; hypothetical protein 1354306 4658755 Sputw3181_1200 Shewanella sp. W3-18-1 hypothetical protein YP_962597.1 1353875 R 351745 CDS YP_962598.1 120598024 4658733 complement(1354431..1356323) 1 NC_008750.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: shm:Shewmr7_1121 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1356323 4658733 Sputw3181_1201 Shewanella sp. W3-18-1 phospholipid/glycerol acyltransferase YP_962598.1 1354431 R 351745 CDS YP_962599.1 120598025 4658385 complement(1356313..1357380) 1 NC_008750.1 PFAM: metallophosphoesterase; KEGG: son:SO1239 hypothetical protein; metallophosphoesterase 1357380 4658385 Sputw3181_1202 Shewanella sp. W3-18-1 metallophosphoesterase YP_962599.1 1356313 R 351745 CDS YP_962600.1 120598026 4658173 complement(1357710..1360295) 1 NC_008750.1 KEGG: ilo:IL2089 predicted ATPase, possibly involved in inorganic ion transport; ATPase 1360295 4658173 Sputw3181_1203 Shewanella sp. W3-18-1 ATPase YP_962600.1 1357710 R 351745 CDS YP_962601.1 120598027 4657699 complement(1361060..1362391) 1 NC_008750.1 PFAM: nucleoside recognition domain protein; KEGG: shm:Shewmr7_1129 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 1362391 4657699 Sputw3181_1204 Shewanella sp. W3-18-1 nucleoside recognition domain-containing protein YP_962601.1 1361060 R 351745 CDS YP_962602.1 120598028 4657696 1363135..1363815 1 NC_008750.1 KEGG: she:Shewmr4_1059 hypothetical protein; hypothetical protein 1363815 4657696 Sputw3181_1205 Shewanella sp. W3-18-1 hypothetical protein YP_962602.1 1363135 D 351745 CDS YP_962603.1 120598029 4657914 complement(1363840..1364715) 1 NC_008750.1 PFAM: peptidase U32; KEGG: son:SO1248 hypothetical peptidase; peptidase U32 1364715 4657914 Sputw3181_1206 Shewanella sp. W3-18-1 peptidase U32 YP_962603.1 1363840 R 351745 CDS YP_962604.1 120598030 4657893 complement(1364757..1365758) 1 NC_008750.1 PFAM: peptidase U32; KEGG: she:Shewmr4_1061 peptidase U32; peptidase U32 1365758 4657893 Sputw3181_1207 Shewanella sp. W3-18-1 peptidase U32 YP_962604.1 1364757 R 351745 CDS YP_962605.1 120598031 4657794 1365897..1366433 1 NC_008750.1 KEGG: shm:Shewmr7_1134 sterol-binding domain protein; sterol-binding domain-containing protein 1366433 4657794 Sputw3181_1208 Shewanella sp. W3-18-1 sterol-binding domain-containing protein YP_962605.1 1365897 D 351745 CDS YP_962606.1 120598032 4661878 complement(1366529..1366780) 1 NC_008750.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_1135 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1366780 4661878 Sputw3181_1209 Shewanella sp. W3-18-1 4Fe-4S ferredoxin YP_962606.1 1366529 R 351745 CDS YP_962607.1 120598033 4657781 complement(1366784..1368151) 1 NC_008750.1 PFAM: peptidase U32; KEGG: son:SO1252 peptidase, U32 family; peptidase U32 1368151 4657781 Sputw3181_1210 Shewanella sp. W3-18-1 peptidase U32 YP_962607.1 1366784 R 351745 CDS YP_962608.1 120598034 4657791 1368462..1369304 1 NC_008750.1 PFAM: HDOD; KEGG: shm:Shewmr7_1137 putative signal transduction protein; putative signal transduction protein 1369304 4657791 Sputw3181_1211 Shewanella sp. W3-18-1 putative signal transduction protein YP_962608.1 1368462 D 351745 CDS YP_962609.1 120598035 4657930 1369339..1370835 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: she:Shewmr4_1066 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 1370835 4657930 Sputw3181_1212 Shewanella sp. W3-18-1 diguanylate cyclase/phosphodiesterase YP_962609.1 1369339 D 351745 CDS YP_962610.1 120598036 4657948 complement(1370909..1371334) 1 NC_008750.1 PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_1139 thioesterase superfamily protein; thioesterase superfamily protein 1371334 4657948 Sputw3181_1213 Shewanella sp. W3-18-1 thioesterase superfamily protein YP_962610.1 1370909 R 351745 CDS YP_962611.1 120598037 4657965 1371577..1372557 1 NC_008750.1 PFAM: response regulator receiver; CheW domain protein; KEGG: vpa:VPA0746 chemotaxis protein CheV; putative CheW protein 1372557 4657965 Sputw3181_1214 Shewanella sp. W3-18-1 putative CheW protein YP_962611.1 1371577 D 351745 CDS YP_962612.1 120598038 4658056 complement(1372708..1373964) 1 NC_008750.1 PFAM: adenylosuccinate synthetase; KEGG: shm:Shewmr7_1140 adenylosuccinate synthase; adenylosuccinate synthase 1373964 4658056 Sputw3181_1215 Shewanella sp. W3-18-1 adenylosuccinate synthase YP_962612.1 1372708 R 351745 CDS YP_962613.1 120598039 4658212 1374105..1374995 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1141 transcriptional regulator, LysR family; LysR family transcriptional regulator 1374995 4658212 Sputw3181_1216 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_962613.1 1374105 D 351745 CDS YP_962614.1 120598040 4658217 complement(1374976..1375791) 1 NC_008750.1 KEGG: she:Shewmr4_1070 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1375791 4658217 Sputw3181_1217 Shewanella sp. W3-18-1 extracellular solute-binding protein YP_962614.1 1374976 R 351745 CDS YP_962615.1 120598041 4658300 1376023..1376451 1 NC_008750.1 PFAM: OsmC family protein; KEGG: shm:Shewmr7_1143 OsmC family protein; OsmC family protein 1376451 4658300 Sputw3181_1218 Shewanella sp. W3-18-1 OsmC family protein YP_962615.1 1376023 D 351745 CDS YP_962616.1 120598042 4658346 complement(1376524..1377168) 1 NC_008750.1 PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_1144 transcriptional regulator, TetR family; TetR family transcriptional regulator 1377168 4658346 Sputw3181_1219 Shewanella sp. W3-18-1 TetR family transcriptional regulator YP_962616.1 1376524 R 351745 CDS YP_962617.1 120598043 4658352 1377585..1378823 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_1073 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1378823 4658352 Sputw3181_1220 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_962617.1 1377585 D 351745 CDS YP_962618.1 120598044 4658410 1378837..1382013 1 NC_008750.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1074 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1382013 4658410 Sputw3181_1221 Shewanella sp. W3-18-1 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_962618.1 1378837 D 351745 CDS YP_962619.1 120598045 4658456 complement(1382119..1382592) 1 NC_008750.1 PFAM: protein of unknown function DUF88; KEGG: sdn:Sden_0372 protein of unknown function DUF88; hypothetical protein 1382592 4658456 Sputw3181_1222 Shewanella sp. W3-18-1 hypothetical protein YP_962619.1 1382119 R 351745 CDS YP_962620.1 120598046 4658434 complement(1382739..1383515) 1 NC_008750.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO3488 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 1383515 4658434 Sputw3181_1223 Shewanella sp. W3-18-1 AraC family transcriptional regulator YP_962620.1 1382739 R 351745 CDS YP_962621.1 120598047 4658422 1383658..1384827 1 NC_008750.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_1082 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 1384827 4658422 Sputw3181_1224 Shewanella sp. W3-18-1 Bcr/CflA subfamily drug resistance transporter YP_962621.1 1383658 D 351745 CDS YP_962622.1 120598048 4658407 complement(1384915..1388055) 1 NC_008750.1 PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_1149 acriflavin resistance protein; acriflavin resistance protein 1388055 4658407 Sputw3181_1225 Shewanella sp. W3-18-1 acriflavin resistance protein YP_962622.1 1384915 R 351745 CDS YP_962623.1 120598049 4658392 complement(1388055..1389173) 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_1150 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1389173 4658392 Sputw3181_1226 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_962623.1 1388055 R 351745 CDS YP_962624.1 120598050 4658865 complement(1389477..1389974) 1 NC_008750.1 KEGG: pfl:PFL_0312 hypothetical protein; ketosteroid isomerase-like protein 1389974 4658865 Sputw3181_1227 Shewanella sp. W3-18-1 ketosteroid isomerase-like protein YP_962624.1 1389477 R 351745 CDS YP_962625.1 120598051 4658883 complement(1389967..1390668) 1 NC_008750.1 KEGG: shm:Shewmr7_1155 putative protein-disulfide isomerase; putative protein-disulfide isomerase 1390668 4658883 Sputw3181_1228 Shewanella sp. W3-18-1 putative protein-disulfide isomerase YP_962625.1 1389967 R 351745 CDS YP_962626.1 120598052 4658885 complement(1390823..1391746) 1 NC_008750.1 PFAM: beta-lactamase domain protein; KEGG: son:SO3474 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 1391746 4658885 Sputw3181_1229 Shewanella sp. W3-18-1 beta-lactamase domain-containing protein YP_962626.1 1390823 R 351745 CDS YP_962627.1 120598053 4658917 1391942..1392883 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1157 transcriptional regulator, LysR family; LysR family transcriptional regulator 1392883 4658917 Sputw3181_1230 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_962627.1 1391942 D 351745 CDS YP_962628.1 120598054 4658621 complement(1393028..1394695) 1 NC_008750.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1394695 4658621 Sputw3181_1231 Shewanella sp. W3-18-1 putative ABC transporter ATP-binding protein YP_962628.1 1393028 R 351745 CDS YP_962629.1 120598055 4658949 1394885..1396138 1 NC_008750.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1396138 glyA 4658949 glyA Shewanella sp. W3-18-1 serine hydroxymethyltransferase YP_962629.1 1394885 D 351745 CDS YP_962630.1 120598056 4659029 1396339..1396788 1 NC_008750.1 PFAM: ATP-cone domain protein; KEGG: shm:Shewmr7_1161 ribonucleotide reductase regulator NrdR-like protein; transcriptional regulator NrdR 1396788 nrdR 4659029 nrdR Shewanella sp. W3-18-1 transcriptional regulator NrdR YP_962630.1 1396339 D 351745 CDS YP_962631.1 120598057 4659041 1396896..1398050 1 NC_008750.1 KEGG: son:SO3469 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 1398050 4659041 Sputw3181_1234 Shewanella sp. W3-18-1 riboflavin biosynthesis protein RibD YP_962631.1 1396896 D 351745 CDS YP_962632.1 120598058 4659027 1398062..1398718 1 NC_008750.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1398718 4659027 Sputw3181_1235 Shewanella sp. W3-18-1 riboflavin synthase subunit alpha YP_962632.1 1398062 D 351745 CDS YP_962633.1 120598059 4658977 1398784..1399887 1 NC_008750.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: shm:Shewmr7_1164 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1399887 4658977 Sputw3181_1236 Shewanella sp. W3-18-1 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_962633.1 1398784 D 351745 CDS YP_962634.1 120598060 4658959 1400019..1400495 1 NC_008750.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1400495 ribH 4658959 ribH Shewanella sp. W3-18-1 6,7-dimethyl-8-ribityllumazine synthase YP_962634.1 1400019 D 351745 CDS YP_962635.1 120598061 4659046 1400510..1400914 1 NC_008750.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1400914 nusB 4659046 nusB Shewanella sp. W3-18-1 transcription antitermination protein NusB YP_962635.1 1400510 D 351745 CDS YP_962636.1 120598062 4659615 1400978..1401949 1 NC_008750.1 KEGG: she:Shewmr4_1101 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 1401949 4659615 Sputw3181_1239 Shewanella sp. W3-18-1 thiamine-monophosphate kinase YP_962636.1 1400978 D 351745 CDS YP_962637.1 120598063 4659683 1401965..1402459 1 NC_008750.1 PFAM: phosphatidylglycerophosphatase A; KEGG: shm:Shewmr7_1168 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase 1402459 4659683 Sputw3181_1240 Shewanella sp. W3-18-1 phosphatidylglycerophosphatase YP_962637.1 1401965 D 351745 CDS YP_962638.1 120598064 4659582 complement(1402613..1404271) 1 NC_008750.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: she:Shewmr4_1104 DNA repair protein RecN; recombination and repair protein 1404271 4659582 Sputw3181_1241 Shewanella sp. W3-18-1 recombination and repair protein YP_962638.1 1402613 R 351745 CDS YP_962639.1 120598065 4659038 complement(1404399..1405361) 1 NC_008750.1 PFAM: Auxin Efflux Carrier; KEGG: shm:Shewmr7_1171 auxin efflux carrier; auxin efflux carrier 1405361 4659038 Sputw3181_1242 Shewanella sp. W3-18-1 auxin efflux carrier YP_962639.1 1404399 R 351745 CDS YP_962640.1 120598066 4659022 1405736..1406635 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3460 transcriptional regulator, LysR family; LysR family transcriptional regulator 1406635 4659022 Sputw3181_1243 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_962640.1 1405736 D 351745 CDS YP_962641.1 120598067 4659203 complement(1406897..1407496) 1 NC_008750.1 PFAM: protein of unknown function DUF416; KEGG: she:Shewmr4_1108 protein of unknown function DUF416; hypothetical protein 1407496 4659203 Sputw3181_1244 Shewanella sp. W3-18-1 hypothetical protein YP_962641.1 1406897 R 351745 CDS YP_962642.1 120598068 4659059 complement(1407471..1410272) 1 NC_008750.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 1410272 4659059 Sputw3181_1245 Shewanella sp. W3-18-1 hybrid sensory histidine kinase BarA YP_962642.1 1407471 R 351745 CDS YP_962643.1 120598069 4658590 1410373..1411725 1 NC_008750.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1411725 rumA 4658590 rumA Shewanella sp. W3-18-1 23S rRNA 5-methyluridine methyltransferase YP_962643.1 1410373 D 351745 CDS YP_962644.1 120598070 4659294 1411878..1414085 1 NC_008750.1 KEGG: son:SO3455 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1414085 4659294 Sputw3181_1247 Shewanella sp. W3-18-1 (p)ppGpp synthetase I SpoT/RelA YP_962644.1 1411878 D 351745 CDS YP_962645.1 120598071 4659427 complement(1414370..1419139) 1 NC_008750.1 KEGG: eba:ebA5435 conserved hypothetical protein, probable DNA/RNA helicase; hypothetical protein 1419139 4659427 Sputw3181_1248 Shewanella sp. W3-18-1 hypothetical protein YP_962645.1 1414370 R 351745 CDS YP_962646.1 120598072 4659507 1419801..1420775 1 NC_008750.1 KEGG: cps:CPS_1152 hypothetical protein; hypothetical protein 1420775 4659507 Sputw3181_1249 Shewanella sp. W3-18-1 hypothetical protein YP_962646.1 1419801 D 351745 CDS YP_962647.1 120598073 4659512 1420831..1421895 1 NC_008750.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 1421895 4659512 Sputw3181_1250 Shewanella sp. W3-18-1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_962647.1 1420831 D 351745 CDS YP_962648.1 120598074 4659150 complement(1422077..1423783) 1 NC_008750.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 1423783 4659150 Sputw3181_1251 Shewanella sp. W3-18-1 amidase YP_962648.1 1422077 R 351745 CDS YP_962649.1 120598075 4659545 complement(1423857..1424969) 1 NC_008750.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 1424969 4659545 Sputw3181_1252 Shewanella sp. W3-18-1 agmatine deiminase YP_962649.1 1423857 R 351745 CDS YP_962650.1 120598076 4659660 1425506..1426432 1 NC_008750.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1426432 mazG 4659660 mazG Shewanella sp. W3-18-1 nucleoside triphosphate pyrophosphohydrolase YP_962650.1 1425506 D 351745 CDS YP_962651.1 120598077 4659670 1426549..1428186 1 NC_008750.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1428186 pyrG 4659670 pyrG Shewanella sp. W3-18-1 CTP synthetase YP_962651.1 1426549 D 351745 CDS YP_962652.1 120598078 4659616 1428392..1429687 1 NC_008750.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1429687 eno 4659616 eno Shewanella sp. W3-18-1 phosphopyruvate hydratase YP_962652.1 1428392 D 351745 CDS YP_962653.1 120598079 4659653 1429787..1430086 1 NC_008750.1 PFAM: Septum formation initiator; KEGG: shm:Shewmr7_1187 septum formation initiator; septum formation initiator 1430086 4659653 Sputw3181_1256 Shewanella sp. W3-18-1 septum formation initiator YP_962653.1 1429787 D 351745 CDS YP_962654.1 120598080 4660243 1430095..1430856 1 NC_008750.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1430856 ispD 4660243 ispD Shewanella sp. W3-18-1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_962654.1 1430095 D 351745 CDS YP_962655.1 120598081 4659878 1430897..1431382 1 NC_008750.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 1431382 ispF 4659878 ispF Shewanella sp. W3-18-1 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_962655.1 1430897 D 351745 CDS YP_962656.1 120598082 4659639 1431404..1432486 1 NC_008750.1 PFAM: tRNA pseudouridine synthase D, TruD; KEGG: shm:Shewmr7_1190 pseudouridylate synthase; pseudouridylate synthase 1432486 4659639 Sputw3181_1259 Shewanella sp. W3-18-1 pseudouridylate synthase YP_962656.1 1431404 D 351745 CDS YP_962657.1 120598083 4659557 1432483..1433232 1 NC_008750.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1433232 surE 4659557 surE Shewanella sp. W3-18-1 stationary phase survival protein SurE YP_962657.1 1432483 D 351745 CDS YP_962658.1 120598084 4659930 1433229..1433864 1 NC_008750.1 KEGG: son:SO3434 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1433864 4659930 Sputw3181_1261 Shewanella sp. W3-18-1 protein-L-isoaspartate O-methyltransferase YP_962658.1 1433229 D 351745 CDS YP_962659.1 120598085 4660113 1433957..1434841 1 NC_008750.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: shm:Shewmr7_1193 peptidase M23B; peptidase M23B 1434841 4660113 Sputw3181_1262 Shewanella sp. W3-18-1 peptidase M23B YP_962659.1 1433957 D 351745 CDS YP_962660.1 120598086 4660117 1434923..1435903 1 NC_008750.1 TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: son:SO3432 RNA polymerase sigma-38 factor; RpoD family RNA polymerase sigma factor 1435903 4660117 Sputw3181_1263 Shewanella sp. W3-18-1 RpoD family RNA polymerase sigma factor YP_962660.1 1434923 D 351745 CDS YP_962661.1 120598087 4659844 complement(1436000..1438570) 1 NC_008750.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1438570 4659844 Sputw3181_1264 Shewanella sp. W3-18-1 DNA mismatch repair protein MutS YP_962661.1 1436000 R 351745 CDS YP_962662.1 120598088 4660211 1438954..1440027 1 NC_008750.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1440027 recA 4660211 recA Shewanella sp. W3-18-1 recombinase A YP_962662.1 1438954 D 351745 CDS YP_962663.1 120598089 4660219 1440102..1440515 1 NC_008750.1 PFAM: regulatory protein RecX; KEGG: shm:Shewmr7_1197 regulatory protein RecX; regulatory protein RecX 1440515 4660219 Sputw3181_1266 Shewanella sp. W3-18-1 regulatory protein RecX YP_962663.1 1440102 D 351745 CDS YP_962664.1 120598090 4660991 1440802..1443480 1 NC_008750.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1443480 alaS 4660991 alaS Shewanella sp. W3-18-1 alanyl-tRNA synthetase YP_962664.1 1440802 D 351745 CDS YP_962665.1 120598091 4660257 1443490..1444746 1 NC_008750.1 KEGG: shm:Shewmr7_1199 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; aspartate kinase 1444746 4660257 Sputw3181_1268 Shewanella sp. W3-18-1 aspartate kinase YP_962665.1 1443490 D 351745 CDS YP_962666.1 120598092 4660190 1444865..1445062 1 NC_008750.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1445062 4660190 Sputw3181_1269 Shewanella sp. W3-18-1 carbon storage regulator YP_962666.1 1444865 D 351745 CDS YP_962667.1 120598093 4657835 complement(1446602..1449478) 1 NC_008750.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1449478 valS 4657835 valS Shewanella sp. W3-18-1 valyl-tRNA synthetase YP_962667.1 1446602 R 351745 CDS YP_962668.1 120598094 4660474 complement(1449494..1450024) 1 NC_008750.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: she:Shewmr4_1131 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit, HolC 1450024 4660474 Sputw3181_1271 Shewanella sp. W3-18-1 DNA polymerase III chi subunit, HolC YP_962668.1 1449494 R 351745 CDS YP_962669.1 120598095 4660205 complement(1451238..1451597) 1 NC_008750.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shm:Shewmr7_1203 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA 1451597 4660205 Sputw3181_1272 Shewanella sp. W3-18-1 sigma 54 modulation protein/ribosomal protein S30EA YP_962669.1 1451238 R 351745 CDS YP_962670.1 120598096 4660497 1451895..1452587 1 NC_008750.1 PFAM: cytochrome B561; KEGG: she:Shewmr4_1133 cytochrome b561; cytochrome B561 1452587 4660497 Sputw3181_1273 Shewanella sp. W3-18-1 cytochrome B561 YP_962670.1 1451895 D 351745 CDS YP_962671.1 120598097 4660501 complement(1452687..1453136) 1 NC_008750.1 PFAM: cytochrome c, class II; KEGG: shm:Shewmr7_1205 cytochrome c, class II; cytochrome c, class II 1453136 4660501 Sputw3181_1274 Shewanella sp. W3-18-1 cytochrome c, class II YP_962671.1 1452687 R 351745 CDS YP_962672.1 120598098 4660636 1453325..1453600 1 NC_008750.1 TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: son:SO3419 trp operon repressor; Trp operon repressor 1453600 4660636 Sputw3181_1275 Shewanella sp. W3-18-1 Trp operon repressor YP_962672.1 1453325 D 351745 CDS YP_962673.1 120598099 4660682 complement(1453747..1454403) 1 NC_008750.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3417 peptidyl-prolyl cis-trans isomerase SlyD; peptidylprolyl isomerase, FKBP-type 1454403 4660682 Sputw3181_1276 Shewanella sp. W3-18-1 peptidylprolyl isomerase, FKBP-type YP_962673.1 1453747 R 351745 CDS YP_962674.1 120598100 4660762 1455045..1457513 1 NC_008750.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1457513 thrA 4660762 thrA Shewanella sp. W3-18-1 bifunctional aspartokinase I/homoserine dehydrogenase I YP_962674.1 1455045 D 351745 CDS YP_962675.1 120598101 4660911 1457510..1458472 1 NC_008750.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1458472 4660911 Sputw3181_1278 Shewanella sp. W3-18-1 homoserine kinase YP_962675.1 1457510 D 351745 CDS YP_962676.1 120598102 4660994 1458543..1459826 1 NC_008750.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1459826 4660994 Sputw3181_1279 Shewanella sp. W3-18-1 threonine synthase YP_962676.1 1458543 D 351745 CDS YP_962677.1 120598103 4660934 1460050..1460904 1 NC_008750.1 SMART: extracellular solute-binding protein, family 3; KEGG: son:SO3412 extracellular solute-binding proteins, family 3 protein; extracellular solute-binding protein 1460904 4660934 Sputw3181_1280 Shewanella sp. W3-18-1 extracellular solute-binding protein YP_962677.1 1460050 D 351745 CDS YP_962678.1 120598104 4661015 1461180..1464464 1 NC_008750.1 PFAM: peptidase S41; WD40 domain protein beta Propeller; SMART: PDZ/DHR/GLGF domain protein; KEGG: son:SO3411 protease, putative; peptidase S41 1464464 4661015 Sputw3181_1281 Shewanella sp. W3-18-1 peptidase S41 YP_962678.1 1461180 D 351745 CDS YP_962679.1 120598105 4661828 complement(1464587..1465024) 1 NC_008750.1 PFAM: OsmC family protein; KEGG: son:SO3409 OsmC/Ohr family protein; OsmC family protein 1465024 4661828 Sputw3181_1282 Shewanella sp. W3-18-1 OsmC family protein YP_962679.1 1464587 R 351745 CDS YP_962680.1 120598106 4661526 complement(1465221..1465577) 1 NC_008750.1 KEGG: she:Shewmr4_1146 hypothetical protein; hypothetical protein 1465577 4661526 Sputw3181_1283 Shewanella sp. W3-18-1 hypothetical protein YP_962680.1 1465221 R 351745 CDS YP_962681.1 120598107 4661421 complement(1465574..1467238) 1 NC_008750.1 PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO3407 hypothetical protein; PepSY-associated TM helix domain-containing protein 1467238 4661421 Sputw3181_1284 Shewanella sp. W3-18-1 PepSY-associated TM helix domain-containing protein YP_962681.1 1465574 R 351745 CDS YP_962682.1 120598108 4661297 complement(1467243..1467611) 1 NC_008750.1 KEGG: shm:Shewmr7_1219 hypothetical protein; hypothetical protein 1467611 4661297 Sputw3181_1285 Shewanella sp. W3-18-1 hypothetical protein YP_962682.1 1467243 R 351745 CDS YP_962683.1 120598109 4661265 1468034..1469650 1 NC_008750.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: she:Shewmr4_1149 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer 1469650 4661265 Sputw3181_1286 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_962683.1 1468034 D 351745 CDS YP_962684.1 120598110 4660714 1469892..1470248 1 NC_008750.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shm:Shewmr7_1221 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA 1470248 4660714 Sputw3181_1287 Shewanella sp. W3-18-1 sigma 54 modulation protein/ribosomal protein S30EA YP_962684.1 1469892 D 351745 CDS YP_962685.1 120598111 4660711 complement(1470346..1471068) 1 NC_008750.1 PFAM: protein of unknown function DUF28; KEGG: son:SO3401 hypothetical protein; hypothetical protein 1471068 4660711 Sputw3181_1288 Shewanella sp. W3-18-1 hypothetical protein YP_962685.1 1470346 R 351745 CDS YP_962686.1 120598112 4660967 1471490..1473058 1 NC_008750.1 PFAM: chemotaxis sensory transducer; KEGG: shm:Shewmr7_1226 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1473058 4660967 Sputw3181_1289 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_962686.1 1471490 D 351745 CDS YP_962687.1 120598113 4660647 1473378..1473617 1 NC_008750.1 KEGG: shm:Shewmr7_1227 hypothetical protein; hypothetical protein 1473617 4660647 Sputw3181_1290 Shewanella sp. W3-18-1 hypothetical protein YP_962687.1 1473378 D 351745 CDS YP_962688.1 120598114 4660378 complement(1473685..1474266) 1 NC_008750.1 PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_1228 transcriptional regulator, TetR family; TetR family transcriptional regulator 1474266 4660378 Sputw3181_1291 Shewanella sp. W3-18-1 TetR family transcriptional regulator YP_962688.1 1473685 R 351745 CDS YP_962689.1 120598115 4660585 1474400..1475467 1 NC_008750.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: she:Shewmr4_1158 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1475467 4660585 Sputw3181_1292 Shewanella sp. W3-18-1 NADH:flavin oxidoreductase YP_962689.1 1474400 D 351745 CDS YP_962690.1 120598116 4660577 complement(1475558..1477990) 1 NC_008750.1 KEGG: shm:Shewmr7_1230 peptidase S16, lon domain protein; peptidase S16, lon domain-containing protein 1477990 4660577 Sputw3181_1293 Shewanella sp. W3-18-1 peptidase S16, lon domain-containing protein YP_962690.1 1475558 R 351745 CDS YP_962691.1 120598117 4660365 1478300..1479541 1 NC_008750.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO3388 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 1479541 4660365 Sputw3181_1294 Shewanella sp. W3-18-1 DEAD/DEAH box helicase YP_962691.1 1478300 D 351745 CDS YP_962692.1 120598118 4660569 complement(1479650..1480153) 1 NC_008750.1 KEGG: she:Shewmr4_1162 hypothetical protein; hypothetical protein 1480153 4660569 Sputw3181_1295 Shewanella sp. W3-18-1 hypothetical protein YP_962692.1 1479650 R 351745 CDS YP_962693.1 120598119 4660321 1480337..1481290 1 NC_008750.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: shm:Shewmr7_1234 protein of unknown function DUF1722; hypothetical protein 1481290 4660321 Sputw3181_1296 Shewanella sp. W3-18-1 hypothetical protein YP_962693.1 1480337 D 351745 CDS YP_962694.1 120598120 4660485 1481333..1482313 1 NC_008750.1 PFAM: regulatory protein, MerR; KEGG: son:SO3385 transcriptional regulator, MerR family; MerR family transcriptional regulator 1482313 4660485 Sputw3181_1297 Shewanella sp. W3-18-1 MerR family transcriptional regulator YP_962694.1 1481333 D 351745 CDS YP_962695.1 120598121 4660479 1482351..1483832 1 NC_008750.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: she:Shewmr4_1165 deoxyribodipyrimidine photo-lyase; deoxyribodipyrimidine photo-lyase 1483832 4660479 Sputw3181_1298 Shewanella sp. W3-18-1 deoxyribodipyrimidine photo-lyase YP_962695.1 1482351 D 351745 CDS YP_962696.1 120598122 4659821 1483858..1484295 1 NC_008750.1 KEGG: shm:Shewmr7_1237 transcriptional regulator-related protein; transcriptional regulator-like protein 1484295 4659821 Sputw3181_1299 Shewanella sp. W3-18-1 transcriptional regulator-like protein YP_962696.1 1483858 D 351745 CDS YP_962697.1 120598123 4659996 1484295..1485122 1 NC_008750.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: she:Shewmr4_1167 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1485122 4659996 Sputw3181_1300 Shewanella sp. W3-18-1 short-chain dehydrogenase/reductase SDR YP_962697.1 1484295 D 351745 CDS YP_962698.1 120598124 4659975 1485119..1486369 1 NC_008750.1 PFAM: amine oxidase; KEGG: shm:Shewmr7_1239 amine oxidase; amine oxidase 1486369 4659975 Sputw3181_1301 Shewanella sp. W3-18-1 amine oxidase YP_962698.1 1485119 D 351745 CDS YP_962699.1 120598125 4659967 1486366..1487175 1 NC_008750.1 PFAM: protein of unknown function DUF1365; KEGG: she:Shewmr4_1169 protein of unknown function DUF1365; hypothetical protein 1487175 4659967 Sputw3181_1302 Shewanella sp. W3-18-1 hypothetical protein YP_962699.1 1486366 D 351745 CDS YP_962700.1 120598126 4659961 1487177..1488430 1 NC_008750.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_1241 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1488430 4659961 Sputw3181_1303 Shewanella sp. W3-18-1 cyclopropane-fatty-acyl-phospholipid synthase YP_962700.1 1487177 D 351745 CDS YP_962701.1 120598127 4659801 1488431..1489084 1 NC_008750.1 KEGG: son:SO3378 hypothetical protein; hypothetical protein 1489084 4659801 Sputw3181_1304 Shewanella sp. W3-18-1 hypothetical protein YP_962701.1 1488431 D 351745 CDS YP_962702.1 120598128 4659884 1489088..1489660 1 NC_008750.1 KEGG: son:SO3377 hypothetical protein; hypothetical protein 1489660 4659884 Sputw3181_1305 Shewanella sp. W3-18-1 hypothetical protein YP_962702.1 1489088 D 351745 CDS YP_962703.1 120598129 4659883 1489648..1490193 1 NC_008750.1 KEGG: shm:Shewmr7_1244 hypothetical protein; hypothetical protein 1490193 4659883 Sputw3181_1306 Shewanella sp. W3-18-1 hypothetical protein YP_962703.1 1489648 D 351745 CDS YP_962704.1 120598130 4659123 complement(1490314..1490658) 1 NC_008750.1 KEGG: shm:Shewmr7_1246 hypothetical protein; hypothetical protein 1490658 4659123 Sputw3181_1307 Shewanella sp. W3-18-1 hypothetical protein YP_962704.1 1490314 R 351745 CDS YP_962705.1 120598131 4658058 1492586..1493137 1 NC_008750.1 PFAM: cytochrome B561; KEGG: she:Shewmr4_1177 cytochrome b561; cytochrome B561 1493137 4658058 Sputw3181_1308 Shewanella sp. W3-18-1 cytochrome B561 YP_962705.1 1492586 D 351745 CDS YP_962706.1 120598132 4659289 1493142..1493717 1 NC_008750.1 PFAM: YceI family protein; KEGG: son:SO3370 hypothetical protein; hypothetical protein 1493717 4659289 Sputw3181_1309 Shewanella sp. W3-18-1 hypothetical protein YP_962706.1 1493142 D 351745 CDS YP_962707.1 120598133 4661712 complement(1493805..1494083) 1 NC_008750.1 PFAM: Fe(II) trafficking protein YggX; KEGG: son:SO3369 hypothetical protein; hypothetical protein 1494083 4661712 Sputw3181_1310 Shewanella sp. W3-18-1 hypothetical protein YP_962707.1 1493805 R 351745 CDS YP_962708.1 120598134 4659093 complement(1494086..1495174) 1 NC_008750.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: shm:Shewmr7_1251 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase 1495174 4659093 Sputw3181_1311 Shewanella sp. W3-18-1 A/G-specific adenine glycosylase YP_962708.1 1494086 R 351745 CDS YP_962709.1 120598135 4659073 1495375..1496091 1 NC_008750.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1496091 trmB 4659073 trmB Shewanella sp. W3-18-1 tRNA (guanine-N(7)-)-methyltransferase YP_962709.1 1495375 D 351745 CDS YP_962710.1 120598136 4659228 1496140..1496466 1 NC_008750.1 PFAM: protein of unknown function DUF469; KEGG: son:SO3366 hypothetical protein; hypothetical protein 1496466 4659228 Sputw3181_1313 Shewanella sp. W3-18-1 hypothetical protein YP_962710.1 1496140 D 351745 CDS YP_962711.1 120598137 4659211 1496466..1497380 1 NC_008750.1 catalyzes the formation of glutamate from glutamine; glutaminase 1497380 4659211 Sputw3181_1314 Shewanella sp. W3-18-1 glutaminase YP_962711.1 1496466 D 351745 CDS YP_962712.1 120598138 4659206 1497560..1498381 1 NC_008750.1 KEGG: shm:Shewmr7_1255 hypothetical protein; hypothetical protein 1498381 4659206 Sputw3181_1315 Shewanella sp. W3-18-1 hypothetical protein YP_962712.1 1497560 D 351745 CDS YP_962713.1 120598139 4660347 1498694..1499707 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1256 transcriptional regulator, LysR family; LysR family transcriptional regulator 1499707 4660347 Sputw3181_1316 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_962713.1 1498694 D 351745 CDS YP_962714.1 120598140 4658828 complement(1500369..1502255) 1 NC_008750.1 PFAM: protein of unknown function DUF885; KEGG: she:Shewmr4_1186 protein of unknown function DUF885; hypothetical protein 1502255 4658828 Sputw3181_1317 Shewanella sp. W3-18-1 hypothetical protein YP_962714.1 1500369 R 351745 CDS YP_962715.1 120598141 4658818 complement(1502409..1503572) 1 NC_008750.1 KEGG: she:Shewmr4_1187 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase 1503572 4658818 Sputw3181_1318 Shewanella sp. W3-18-1 putative oxygen-independent coproporphyrinogen III oxidase YP_962715.1 1502409 R 351745 CDS YP_962716.1 120598142 4658459 complement(1503572..1504189) 1 NC_008750.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 1504189 4658459 Sputw3181_1319 Shewanella sp. W3-18-1 putative deoxyribonucleotide triphosphate pyrophosphatase YP_962716.1 1503572 R 351745 CDS YP_962717.1 120598143 4661883 complement(1504300..1504734) 1 NC_008750.1 KEGG: shm:Shewmr7_1260 hypothetical protein; hypothetical protein 1504734 4661883 Sputw3181_1320 Shewanella sp. W3-18-1 hypothetical protein YP_962717.1 1504300 R 351745 CDS YP_962718.1 120598144 4658570 complement(1504812..1505102) 1 NC_008750.1 PFAM: protein of unknown function DUF167; KEGG: son:SO3356 hypothetical protein; hypothetical protein 1505102 4658570 Sputw3181_1321 Shewanella sp. W3-18-1 hypothetical protein YP_962718.1 1504812 R 351745 CDS YP_962719.1 120598145 4658738 complement(1505102..1505650) 1 NC_008750.1 PFAM: protein of unknown function YGGT; KEGG: she:Shewmr4_1191 protein of unknown function YGGT; hypothetical protein 1505650 4658738 Sputw3181_1322 Shewanella sp. W3-18-1 hypothetical protein YP_962719.1 1505102 R 351745 CDS YP_962720.1 120598146 4658725 complement(1505697..1506515) 1 NC_008750.1 KEGG: son:SO3354 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 1506515 4658725 Sputw3181_1323 Shewanella sp. W3-18-1 pyrroline-5-carboxylate reductase YP_962720.1 1505697 R 351745 CDS YP_962721.1 120598147 4658557 complement(1506696..1507394) 1 NC_008750.1 PFAM: alanine racemase domain protein; KEGG: shm:Shewmr7_1264 protein of unknown function UPF0001; alanine racemase domain-containing protein 1507394 4658557 Sputw3181_1324 Shewanella sp. W3-18-1 alanine racemase domain-containing protein YP_962721.1 1506696 R 351745 CDS YP_962722.1 120598148 4658695 1507430..1508467 1 NC_008750.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: son:SO3351 twitching motility protein PilT; twitching motility protein 1508467 4658695 Sputw3181_1325 Shewanella sp. W3-18-1 twitching motility protein YP_962722.1 1507430 D 351745 CDS YP_962723.1 120598149 4658692 1508477..1509589 1 NC_008750.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: shm:Shewmr7_1266 twitching motility protein; twitching motility protein 1509589 4658692 Sputw3181_1326 Shewanella sp. W3-18-1 twitching motility protein YP_962723.1 1508477 D 351745 CDS YP_962724.1 120598150 4661354 1509728..1510267 1 NC_008750.1 PFAM: glutathione peroxidase; KEGG: shm:Shewmr7_1267 glutathione peroxidase; glutathione peroxidase 1510267 4661354 Sputw3181_1327 Shewanella sp. W3-18-1 glutathione peroxidase YP_962724.1 1509728 D 351745 CDS YP_962725.1 120598151 4658655 1510300..1511313 1 NC_008750.1 PFAM: ferrochelatase; KEGG: shm:Shewmr7_1268 ferrochelatase; ferrochelatase 1511313 4658655 Sputw3181_1328 Shewanella sp. W3-18-1 ferrochelatase YP_962725.1 1510300 D 351745 CDS YP_962726.1 120598152 4658646 complement(1511375..1511800) 1 NC_008750.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1511800 4658646 Sputw3181_1329 Shewanella sp. W3-18-1 Holliday junction resolvase-like protein YP_962726.1 1511375 R 351745 CDS YP_962727.1 120598153 4657735 complement(1511832..1512395) 1 NC_008750.1 PFAM: protein of unknown function DUF179; KEGG: son:SO3346 putative transcriptional regulator; hypothetical protein 1512395 4657735 Sputw3181_1330 Shewanella sp. W3-18-1 hypothetical protein YP_962727.1 1511832 R 351745 CDS YP_962728.1 120598154 4657734 complement(1512508..1512837) 1 NC_008750.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 1512837 4657734 Sputw3181_1331 Shewanella sp. W3-18-1 translation initiation factor Sui1 YP_962728.1 1512508 R 351745 CDS YP_962729.1 120598155 4657725 complement(1513003..1513317) 1 NC_008750.1 KEGG: shm:Shewmr7_1272 hypothetical protein; hypothetical protein 1513317 4657725 Sputw3181_1332 Shewanella sp. W3-18-1 hypothetical protein YP_962729.1 1513003 R 351745 CDS YP_962730.1 120598156 4658091 1513496..1514056 1 NC_008750.1 KEGG: son:SO3343 hypothetical protein; hypothetical protein 1514056 4658091 Sputw3181_1333 Shewanella sp. W3-18-1 hypothetical protein YP_962730.1 1513496 D 351745 CDS YP_962731.1 120598157 4657715 1514387..1515040 1 NC_008750.1 PFAM: protein of unknown function UPF0126; KEGG: shm:Shewmr7_1274 protein of unknown function UPF0126; hypothetical protein 1515040 4657715 Sputw3181_1334 Shewanella sp. W3-18-1 hypothetical protein YP_962731.1 1514387 D 351745 CDS YP_962732.1 120598158 4658026 complement(1515088..1515681) 1 NC_008750.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_1275 redoxin domain protein; redoxin domain-containing protein 1515681 4658026 Sputw3181_1335 Shewanella sp. W3-18-1 redoxin domain-containing protein YP_962732.1 1515088 R 351745 CDS YP_962733.1 120598159 4657987 complement(1515790..1516617) 1 NC_008750.1 PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_1276 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 1516617 4657987 Sputw3181_1336 Shewanella sp. W3-18-1 mechanosensitive ion channel protein MscS YP_962733.1 1515790 R 351745 CDS YP_962734.1 120598160 4657981 complement(1516652..1517242) 1 NC_008750.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO3339 OmpA family protein; OmpA/MotB domain-containing protein 1517242 4657981 Sputw3181_1337 Shewanella sp. W3-18-1 OmpA/MotB domain-containing protein YP_962734.1 1516652 R 351745 CDS YP_962735.1 120598161 4657913 1517567..1518580 1 NC_008750.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: she:Shewmr4_1207 threonine aldolase; threonine aldolase 1518580 4657913 Sputw3181_1338 Shewanella sp. W3-18-1 threonine aldolase YP_962735.1 1517567 D 351745 CDS YP_962736.1 120598162 4657898 complement(1518985..1519809) 1 NC_008750.1 PFAM: protein of unknown function DUF980; KEGG: she:Shewmr4_1210 protein of unknown function DUF980; hypothetical protein 1519809 4657898 Sputw3181_1339 Shewanella sp. W3-18-1 hypothetical protein YP_962736.1 1518985 R 351745 CDS YP_962737.1 120598163 4657878 complement(1519909..1521645) 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO3334 GGDEF family protein; diguanylate cyclase 1521645 4657878 Sputw3181_1340 Shewanella sp. W3-18-1 diguanylate cyclase YP_962737.1 1519909 R 351745 CDS YP_962738.1 120598164 4660980 complement(1521642..1523048) 1 NC_008750.1 PFAM: extracellular solute-binding protein, family 1; KEGG: she:Shewmr4_1212 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1523048 4660980 Sputw3181_1341 Shewanella sp. W3-18-1 extracellular solute-binding protein YP_962738.1 1521642 R 351745 CDS YP_962739.1 120598165 4657674 1523382..1523840 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3328 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1523840 4657674 Sputw3181_1342 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_962739.1 1523382 D 351745 CDS YP_962740.1 120598166 4657860 1523998..1524207 1 NC_008750.1 KEGG: she:Shewmr4_1216 hypothetical protein; hypothetical protein 1524207 4657860 Sputw3181_1343 Shewanella sp. W3-18-1 hypothetical protein YP_962740.1 1523998 D 351745 CDS YP_962741.1 120598167 4661043 1524334..1524636 1 NC_008750.1 KEGG: shm:Shewmr7_1288 NrfJ-related protein; NrfJ-like protein 1524636 4661043 Sputw3181_1344 Shewanella sp. W3-18-1 NrfJ-like protein YP_962741.1 1524334 D 351745 CDS YP_962742.1 120598168 4658371 1524806..1525318 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1289 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1525318 4658371 Sputw3181_1345 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_962742.1 1524806 D 351745 CDS YP_962743.1 120598169 4658464 1525379..1525912 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_1219 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1525912 4658464 Sputw3181_1346 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_962743.1 1525379 D 351745 CDS YP_962744.1 120598170 4657802 complement(1526042..1526737) 1 NC_008750.1 PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: shm:Shewmr7_1291 pirin domain protein domain protein; pirin domain-containing protein 1526737 4657802 Sputw3181_1347 Shewanella sp. W3-18-1 pirin domain-containing protein YP_962744.1 1526042 R 351745 CDS YP_962745.1 120598171 4657854 complement(1526749..1527192) 1 NC_008750.1 PFAM: DoxX family protein; KEGG: shm:Shewmr7_1292 DoxX family protein; DoxX family protein 1527192 4657854 Sputw3181_1348 Shewanella sp. W3-18-1 DoxX family protein YP_962745.1 1526749 R 351745 CDS YP_962746.1 120598172 4657872 1527359..1528252 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_1222 transcriptional regulator, LysR family; LysR family transcriptional regulator 1528252 4657872 Sputw3181_1349 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_962746.1 1527359 D 351745 CDS YP_962747.1 120598173 4657897 complement(1528282..1530027) 1 NC_008750.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: shm:Shewmr7_1294 metallophosphoesterase; 5'-nucleotidase domain-containing protein 1530027 4657897 Sputw3181_1350 Shewanella sp. W3-18-1 5'-nucleotidase domain-containing protein YP_962747.1 1528282 R 351745 CDS YP_962748.1 120598174 4657908 complement(1530167..1531258) 1 NC_008750.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: shm:Shewmr7_1295 protein of unknown function DUF21; hypothetical protein 1531258 4657908 Sputw3181_1351 Shewanella sp. W3-18-1 hypothetical protein YP_962748.1 1530167 R 351745 CDS YP_962749.1 120598175 4657933 1531325..1532524 1 NC_008750.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1532524 4657933 Sputw3181_1352 Shewanella sp. W3-18-1 ribosomal RNA large subunit methyltransferase N YP_962749.1 1531325 D 351745 CDS YP_962750.1 120598176 4658062 1532557..1533345 1 NC_008750.1 KEGG: she:Shewmr4_1226 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1533345 4658062 Sputw3181_1353 Shewanella sp. W3-18-1 type IV pilus biogenesis/stability protein PilW YP_962750.1 1532557 D 351745 CDS YP_962751.1 120598177 4658081 1533342..1534427 1 NC_008750.1 KEGG: she:Shewmr4_1227 hypothetical protein; hypothetical protein 1534427 4658081 Sputw3181_1354 Shewanella sp. W3-18-1 hypothetical protein YP_962751.1 1533342 D 351745 CDS YP_962752.1 120598178 4658124 1534477..1535592 1 NC_008750.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1535592 ispG 4658124 ispG Shewanella sp. W3-18-1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_962752.1 1534477 D 351745 CDS YP_962753.1 120598179 4658165 1535723..1537000 1 NC_008750.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1537000 hisS 4658165 hisS Shewanella sp. W3-18-1 histidyl-tRNA synthetase YP_962753.1 1535723 D 351745 CDS YP_962754.1 120598180 4658204 1537014..1537634 1 NC_008750.1 KEGG: shm:Shewmr7_1301 hypothetical protein; hypothetical protein 1537634 4658204 Sputw3181_1357 Shewanella sp. W3-18-1 hypothetical protein YP_962754.1 1537014 D 351745 CDS YP_962755.1 120598181 4658208 1537646..1538833 1 NC_008750.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1538833 4658208 Sputw3181_1358 Shewanella sp. W3-18-1 outer membrane protein assembly complex subunit YfgL YP_962755.1 1537646 D 351745 CDS YP_962756.1 120598182 4658215 1538913..1540379 1 NC_008750.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1540379 engA 4658215 engA Shewanella sp. W3-18-1 GTP-binding protein EngA YP_962756.1 1538913 D 351745 CDS YP_962757.1 120598183 4658225 complement(1540462..1541862) 1 NC_008750.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1541862 xseA 4658225 xseA Shewanella sp. W3-18-1 exodeoxyribonuclease VII large subunit YP_962757.1 1540462 R 351745 CDS YP_962758.1 120598184 4658231 1541929..1543395 1 NC_008750.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1543395 4658231 Sputw3181_1361 Shewanella sp. W3-18-1 inosine 5'-monophosphate dehydrogenase YP_962758.1 1541929 D 351745 CDS YP_962759.1 120598185 4658238 1543513..1545090 1 NC_008750.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1545090 guaA 4658238 guaA Shewanella sp. W3-18-1 GMP synthase YP_962759.1 1543513 D 351745 CDS YP_962760.1 120598186 4658247 1545257..1545751 1 NC_008750.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: she:Shewmr4_1236 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 1545751 4658247 Sputw3181_1363 Shewanella sp. W3-18-1 zinc-binding CMP/dCMP deaminase YP_962760.1 1545257 D 351745 CDS YP_962761.1 120598187 4657750 complement(1546209..1547642) 1 NC_008750.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 1547642 4657750 Sputw3181_1364 Shewanella sp. W3-18-1 putative transglycosylase YP_962761.1 1546209 R 351745 CDS YP_962762.1 120598188 4657751 1547921..1551802 1 NC_008750.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1551802 4657751 Sputw3181_1365 Shewanella sp. W3-18-1 phosphoribosylformylglycinamidine synthase YP_962762.1 1547921 D 351745 CDS YP_962763.1 120598189 4658273 1553046..1554602 1 NC_008750.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: shm:Shewmr7_1310 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 1554602 4658273 Sputw3181_1366 Shewanella sp. W3-18-1 cytochrome bd ubiquinol oxidase subunit I YP_962763.1 1553046 D 351745 CDS YP_962764.1 120598190 4658287 1554618..1555757 1 NC_008750.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: son:SO3285 cytochrome bd-I oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 1555757 4658287 Sputw3181_1367 Shewanella sp. W3-18-1 cytochrome d ubiquinol oxidase subunit II YP_962764.1 1554618 D 351745 CDS YP_962765.1 120598191 4658306 1555787..1555903 1 NC_008750.1 TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: shm:Shewmr7_1312 cyd operon protein YbgT; cyd operon protein YbgT 1555903 4658306 Sputw3181_1368 Shewanella sp. W3-18-1 cyd operon protein YbgT YP_962765.1 1555787 D 351745 CDS YP_962766.1 120598192 4658323 1556108..1556344 1 NC_008750.1 KEGG: she:Shewmr4_1960 hypothetical protein; hypothetical protein 1556344 4658323 Sputw3181_1369 Shewanella sp. W3-18-1 hypothetical protein YP_962766.1 1556108 D 351745 CDS YP_962767.1 120598193 4658330 complement(1556411..1558414) 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_1243 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1558414 4658330 Sputw3181_1370 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_962767.1 1556411 R 351745 CDS YP_962768.1 120598194 4658448 complement(1558640..1561717) 1 NC_008750.1 PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1245 acriflavin resistance protein; acriflavin resistance protein 1561717 4658448 Sputw3181_1371 Shewanella sp. W3-18-1 acriflavin resistance protein YP_962768.1 1558640 R 351745 CDS YP_962769.1 120598195 4658445 complement(1561717..1562829) 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3278 hypothetical protein; RND family efflux transporter MFP subunit 1562829 4658445 Sputw3181_1372 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_962769.1 1561717 R 351745 CDS YP_962770.1 120598196 4658438 1562968..1563597 1 NC_008750.1 PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_1317 transcriptional regulator, TetR family; TetR family transcriptional regulator 1563597 4658438 Sputw3181_1373 Shewanella sp. W3-18-1 TetR family transcriptional regulator YP_962770.1 1562968 D 351745 CDS YP_962771.1 120598197 4658423 1563715..1564659 1 NC_008750.1 KEGG: she:Shewmr4_1248 hypothetical protein; hypothetical protein 1564659 4658423 Sputw3181_1374 Shewanella sp. W3-18-1 hypothetical protein YP_962771.1 1563715 D 351745 CDS YP_962772.1 120598198 4658444 complement(1564678..1565238) 1 NC_008750.1 KEGG: shm:Shewmr7_1319 hypothetical protein; hypothetical protein 1565238 4658444 Sputw3181_1375 Shewanella sp. W3-18-1 hypothetical protein YP_962772.1 1564678 R 351745 CDS YP_962773.1 120598199 4658401 complement(1565277..1565756) 1 NC_008750.1 KEGG: shm:Shewmr7_1320 hypothetical protein; hypothetical protein 1565756 4658401 Sputw3181_1376 Shewanella sp. W3-18-1 hypothetical protein YP_962773.1 1565277 R 351745 CDS YP_962774.1 120598200 4658997 complement(1565872..1568337) 1 NC_008750.1 PFAM: protein of unknown function DUF115; KEGG: son:SO3273 hypothetical protein; hypothetical protein 1568337 4658997 Sputw3181_1377 Shewanella sp. W3-18-1 hypothetical protein YP_962774.1 1565872 R 351745 CDS YP_962775.1 120598201 4658639 1568718..1569713 1 NC_008750.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: son:SO3271 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD 1569713 4658639 Sputw3181_1378 Shewanella sp. W3-18-1 polysaccharide biosynthesis protein CapD YP_962775.1 1568718 D 351745 CDS YP_962776.1 120598202 4658657 1569710..1570858 1 NC_008750.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: son:SO3270 polysaccharide biosynthesis protein; DegT/DnrJ/EryC1/StrS aminotransferase 1570858 4658657 Sputw3181_1379 Shewanella sp. W3-18-1 DegT/DnrJ/EryC1/StrS aminotransferase YP_962776.1 1569710 D 351745 CDS YP_962777.1 120598203 4658442 1570855..1571559 1 NC_008750.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: par:Psyc_0656 putative acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase 1571559 4658442 Sputw3181_1380 Shewanella sp. W3-18-1 acylneuraminate cytidylyltransferase YP_962777.1 1570855 D 351745 CDS YP_962778.1 120598204 4658718 1571556..1572671 1 NC_008750.1 KEGG: pfl:PFL_1624 FlaR protein (FlaR); FlaR protein (FlaR) 1572671 4658718 Sputw3181_1381 Shewanella sp. W3-18-1 FlaR protein (FlaR) YP_962778.1 1571556 D 351745 CDS YP_962779.1 120598205 4658740 1572675..1573724 1 NC_008750.1 PFAM: N-acetylneuraminic acid synthase, N-terminal domain; SAF domain; KEGG: pfl:PFL_1625 NeuB family protein; N-acylneuraminate-9-phosphate synthase 1573724 4658740 Sputw3181_1382 Shewanella sp. W3-18-1 N-acylneuraminate-9-phosphate synthase YP_962779.1 1572675 D 351745 CDS YP_962780.1 120598206 4658747 1573706..1574305 1 NC_008750.1 KEGG: sus:Acid_6945 GCN5-related N-acetyltransferase; hypothetical protein 1574305 4658747 Sputw3181_1383 Shewanella sp. W3-18-1 hypothetical protein YP_962780.1 1573706 D 351745 CDS YP_962781.1 120598207 4658783 1574302..1574532 1 NC_008750.1 KEGG: sus:Acid_1361 acyl carrier protein; acyl carrier protein 1574532 4658783 Sputw3181_1384 Shewanella sp. W3-18-1 acyl carrier protein YP_962781.1 1574302 D 351745 CDS YP_962782.1 120598208 4658831 1574532..1575278 1 NC_008750.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sus:Acid_1362 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1575278 4658831 Sputw3181_1385 Shewanella sp. W3-18-1 short-chain dehydrogenase/reductase SDR YP_962782.1 1574532 D 351745 CDS YP_962783.1 120598209 4658876 1575311..1576672 1 NC_008750.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro07030 possible acyl-CoA synthetase; AMP-dependent synthetase and ligase 1576672 4658876 Sputw3181_1386 Shewanella sp. W3-18-1 AMP-dependent synthetase and ligase YP_962783.1 1575311 D 351745 CDS YP_962784.1 120598210 4658909 1576669..1577724 1 NC_008750.1 PFAM: acyl-protein synthetase, LuxE; KEGG: sus:Acid_1364 acyl-protein synthetase, LuxE; acyl-protein synthetase, LuxE 1577724 4658909 Sputw3181_1387 Shewanella sp. W3-18-1 acyl-protein synthetase, LuxE YP_962784.1 1576669 D 351745 CDS YP_962785.1 120598211 4658940 1577703..1578893 1 NC_008750.1 KEGG: sus:Acid_1365 hypothetical protein; hypothetical protein 1578893 4658940 Sputw3181_1388 Shewanella sp. W3-18-1 hypothetical protein YP_962785.1 1577703 D 351745 CDS YP_962786.1 120598212 4658942 1578886..1579731 1 NC_008750.1 KEGG: bfr:BF2579 putative cholinephosphotransferase; hypothetical protein 1579731 4658942 Sputw3181_1389 Shewanella sp. W3-18-1 hypothetical protein YP_962786.1 1578886 D 351745 CDS YP_962787.1 120598213 4658947 1579747..1580487 1 NC_008750.1 PFAM: Methyltransferase type 12; KEGG: pau:PA14_50330 hypothetical protein; type 12 methyltransferase 1580487 4658947 Sputw3181_1390 Shewanella sp. W3-18-1 type 12 methyltransferase YP_962787.1 1579747 D 351745 CDS YP_962788.1 120598214 4658987 complement(1580594..1581643) 1 NC_008750.1 PFAM: Integrase, catalytic region; KEGG: sdn:Sden_2168 integrase, catalytic region; integrase catalytic subunit 1581643 4658987 Sputw3181_1391 Shewanella sp. W3-18-1 integrase catalytic subunit YP_962788.1 1580594 R 351745 CDS YP_962789.1 120598215 4658970 complement(1581649..1582149) 1 NC_008750.1 PFAM: transposase IS3/IS911 family protein; KEGG: sdn:Sden_2169 hypothetical protein; transposase IS3/IS911 family protein 1582149 4658970 Sputw3181_1392 Shewanella sp. W3-18-1 transposase IS3/IS911 family protein YP_962789.1 1581649 R 351745 CDS YP_962790.1 120598216 4659665 complement(1582255..1583865) 1 NC_008750.1 KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 1583865 4659665 Sputw3181_1393 Shewanella sp. W3-18-1 IS4 family transposase YP_962790.1 1582255 R 351745 CDS YP_962791.1 120598217 4659174 1584031..1584537 1 NC_008750.1 KEGG: pau:PA14_50320 hypothetical protein; hypothetical protein 1584537 4659174 Sputw3181_1394 Shewanella sp. W3-18-1 hypothetical protein YP_962791.1 1584031 D 351745 CDS YP_962792.1 120598218 4659190 1584534..1585160 1 NC_008750.1 KEGG: pau:PA14_50310 possible sugar nucleotidyltransferase; putative sugar nucleotidyltransferase 1585160 4659190 Sputw3181_1395 Shewanella sp. W3-18-1 putative sugar nucleotidyltransferase YP_962792.1 1584534 D 351745 CDS YP_962793.1 120598219 4658980 complement(1585209..1585502) 1 NC_008750.1 KEGG: son:SO3260 hypothetical protein; hypothetical protein 1585502 4658980 Sputw3181_1396 Shewanella sp. W3-18-1 hypothetical protein YP_962793.1 1585209 R 351745 CDS YP_962794.1 120598220 4659208 complement(1585499..1586788) 1 NC_008750.1 KEGG: son:SO3259 hypothetical protein; hypothetical protein 1586788 4659208 Sputw3181_1397 Shewanella sp. W3-18-1 hypothetical protein YP_962794.1 1585499 R 351745 CDS YP_962795.1 120598221 4658245 complement(1586969..1588135) 1 NC_008750.1 KEGG: she:Shewmr4_1251 hypothetical protein; hypothetical protein 1588135 4658245 Sputw3181_1398 Shewanella sp. W3-18-1 hypothetical protein YP_962795.1 1586969 R 351745 CDS YP_962796.1 120598222 4659236 1588419..1589051 1 NC_008750.1 KEGG: shm:Shewmr7_1322 hypothetical protein; hypothetical protein 1589051 4659236 Sputw3181_1399 Shewanella sp. W3-18-1 hypothetical protein YP_962796.1 1588419 D 351745 CDS YP_962797.1 120598223 4659316 1589048..1589497 1 NC_008750.1 PFAM: protein of unknown function DUF400; KEGG: son:SO3256 hypothetical protein; hypothetical protein 1589497 4659316 Sputw3181_1400 Shewanella sp. W3-18-1 hypothetical protein YP_962797.1 1589048 D 351745 CDS YP_962798.1 120598224 4659349 complement(1589854..1590279) 1 NC_008750.1 PFAM: FlgN family protein; KEGG: shm:Shewmr7_1324 FlgN family protein; FlgN family protein 1590279 4659349 Sputw3181_1401 Shewanella sp. W3-18-1 FlgN family protein YP_962798.1 1589854 R 351745 CDS YP_962799.1 120598225 4659395 complement(1590282..1590605) 1 NC_008750.1 PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: shm:Shewmr7_1325 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM 1590605 4659395 Sputw3181_1402 Shewanella sp. W3-18-1 anti-sigma-28 factor FlgM YP_962799.1 1590282 R 351745 CDS YP_962800.1 120598226 4659411 complement(1590679..1591386) 1 NC_008750.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1591386 flgA 4659411 flgA Shewanella sp. W3-18-1 flagellar basal body P-ring biosynthesis protein FlgA YP_962800.1 1590679 R 351745 CDS YP_962801.1 120598227 4659428 1591591..1592511 1 NC_008750.1 PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO3252 chemotaxis protein CheV; putative CheW protein 1592511 4659428 Sputw3181_1404 Shewanella sp. W3-18-1 putative CheW protein YP_962801.1 1591591 D 351745 CDS YP_962802.1 120598228 4659472 1592622..1593461 1 NC_008750.1 PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 12; KEGG: son:SO3251 chemotaxis protein methyltransferase CheR; protein-glutamate O-methyltransferase 1593461 4659472 Sputw3181_1405 Shewanella sp. W3-18-1 protein-glutamate O-methyltransferase YP_962802.1 1592622 D 351745 CDS YP_962803.1 120598229 4659517 1593606..1594010 1 NC_008750.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 1594010 flgB 4659517 flgB Shewanella sp. W3-18-1 flagellar basal body rod protein FlgB YP_962803.1 1593606 D 351745 CDS YP_962804.1 120598230 4659527 1594013..1594429 1 NC_008750.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1594429 flgC 4659527 flgC Shewanella sp. W3-18-1 flagellar basal body rod protein FlgC YP_962804.1 1594013 D 351745 CDS YP_962805.1 120598231 4659542 1594454..1595215 1 NC_008750.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1595215 flgD 4659542 flgD Shewanella sp. W3-18-1 flagellar basal body rod modification protein YP_962805.1 1594454 D 351745 CDS YP_962806.1 120598232 4659584 1595283..1596644 1 NC_008750.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1596644 flgE 4659584 flgE Shewanella sp. W3-18-1 flagellar hook protein FlgE YP_962806.1 1595283 D 351745 CDS YP_962807.1 120598233 4659652 1596815..1597558 1 NC_008750.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1597558 flgF 4659652 flgF Shewanella sp. W3-18-1 flagellar basal body rod protein FlgF YP_962807.1 1596815 D 351745 CDS YP_962808.1 120598234 4659634 1597569..1598357 1 NC_008750.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1598357 flgG 4659634 flgG Shewanella sp. W3-18-1 flagellar basal body rod protein FlgG YP_962808.1 1597569 D 351745 CDS YP_962809.1 120598235 4659554 1598369..1599043 1 NC_008750.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 1599043 flgH 4659554 flgH Shewanella sp. W3-18-1 flagellar basal body L-ring protein YP_962809.1 1598369 D 351745 CDS YP_962810.1 120598236 4659807 1599055..1600146 1 NC_008750.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1600146 flgI 4659807 flgI Shewanella sp. W3-18-1 flagellar basal body P-ring protein YP_962810.1 1599055 D 351745 CDS YP_962811.1 120598237 4660202 1600164..1601321 1 NC_008750.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1601321 flgJ 4660202 flgJ Shewanella sp. W3-18-1 flagellar rod assembly protein/muramidase FlgJ YP_962811.1 1600164 D 351745 CDS YP_962812.1 120598238 4660232 1601362..1603287 1 NC_008750.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: shm:Shewmr7_1338 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 1603287 4660232 Sputw3181_1415 Shewanella sp. W3-18-1 flagellar hook-associated protein FlgK YP_962812.1 1601362 D 351745 CDS YP_962813.1 120598239 4659666 1603299..1604510 1 NC_008750.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 1604510 flgL 4659666 flgL Shewanella sp. W3-18-1 flagellar hook-associated protein FlgL YP_962813.1 1603299 D 351745 CDS YP_962814.1 120598240 4659903 1604613..1605434 1 NC_008750.1 PFAM: flagellin domain protein; KEGG: sdn:Sden_1314 flagellin-like protein; flagellin domain-containing protein 1605434 4659903 Sputw3181_1417 Shewanella sp. W3-18-1 flagellin domain-containing protein YP_962814.1 1604613 D 351745 CDS YP_962815.1 120598241 4659620 1605697..1606512 1 NC_008750.1 PFAM: flagellin domain protein; KEGG: sdn:Sden_1315 flagellin-like protein; flagellin domain-containing protein 1606512 4659620 Sputw3181_1418 Shewanella sp. W3-18-1 flagellin domain-containing protein YP_962815.1 1605697 D 351745 CDS YP_962816.1 120598242 4659919 1606658..1607047 1 NC_008750.1 PFAM: flagellar protein FlaG protein; KEGG: son:SO3236 flagellin FlaG; flagellar protein FlaG protein 1607047 4659919 Sputw3181_1419 Shewanella sp. W3-18-1 flagellar protein FlaG protein YP_962816.1 1606658 D 351745 CDS YP_962817.1 120598243 4659574 1607097..1608467 1 NC_008750.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: son:SO3235 flagellar hook-associated protein FliD; flagellar hook-associated 2 domain-containing protein 1608467 4659574 Sputw3181_1420 Shewanella sp. W3-18-1 flagellar hook-associated 2 domain-containing protein YP_962817.1 1607097 D 351745 CDS YP_962818.1 120598244 4659993 1608486..1608815 1 NC_008750.1 KEGG: son:SO3234 hypothetical protein; hypothetical protein 1608815 4659993 Sputw3181_1421 Shewanella sp. W3-18-1 hypothetical protein YP_962818.1 1608486 D 351745 CDS YP_962819.1 120598245 4660075 1608822..1609232 1 NC_008750.1 flagellin specific chaperone; flagellar protein FliS 1609232 fliS 4660075 fliS Shewanella sp. W3-18-1 flagellar protein FliS YP_962819.1 1608822 D 351745 CDS YP_962820.1 120598246 4659840 1609518..1610951 1 NC_008750.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; flagellar regulatory FleQ domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_1345 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 1610951 4659840 Sputw3181_1423 Shewanella sp. W3-18-1 sigma-54 dependent trancsriptional regulator YP_962820.1 1609518 D 351745 CDS YP_962821.1 120598247 4660155 1611061..1612143 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: son:SO3231 flagellar regulatory protein B; PAS/PAC sensor signal transduction histidine kinase 1612143 4660155 Sputw3181_1424 Shewanella sp. W3-18-1 PAS/PAC sensor signal transduction histidine kinase YP_962821.1 1611061 D 351745 CDS YP_962822.1 120598248 4660160 1612136..1613476 1 NC_008750.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: she:Shewmr4_1280 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator 1613476 4660160 Sputw3181_1425 Shewanella sp. W3-18-1 two component, sigma54 specific, Fis family transcriptional regulator YP_962822.1 1612136 D 351745 CDS YP_962823.1 120598249 4660163 1613698..1614033 1 NC_008750.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: she:Shewmr4_1281 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE 1614033 4660163 Sputw3181_1426 Shewanella sp. W3-18-1 flagellar hook-basal body complex subunit FliE YP_962823.1 1613698 D 351745 CDS YP_962824.1 120598250 4660198 1614079..1615761 1 NC_008750.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1615761 fliF 4660198 fliF Shewanella sp. W3-18-1 flagellar MS-ring protein YP_962824.1 1614079 D 351745 CDS YP_962825.1 120598251 4659818 1615754..1616800 1 NC_008750.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1616800 fliG 4659818 fliG Shewanella sp. W3-18-1 flagellar motor switch protein G YP_962825.1 1615754 D 351745 CDS YP_962826.1 120598252 4660998 1616787..1617743 1 NC_008750.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1617743 fliH 4660998 fliH Shewanella sp. W3-18-1 flagellar assembly protein H YP_962826.1 1616787 D 351745 CDS YP_962827.1 120598253 4660920 1617712..1619049 1 NC_008750.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1619049 fliI 4660920 fliI Shewanella sp. W3-18-1 flagellum-specific ATP synthase YP_962827.1 1617712 D 351745 CDS YP_962828.1 120598254 4661011 1619061..1619504 1 NC_008750.1 TIGRFAM: flagellar export protein FliJ; KEGG: shm:Shewmr7_1353 flagellar export protein FliJ; flagellar export protein FliJ 1619504 4661011 Sputw3181_1431 Shewanella sp. W3-18-1 flagellar export protein FliJ YP_962828.1 1619061 D 351745 CDS YP_962829.1 120598255 4660279 1619671..1621146 1 NC_008750.1 PFAM: flagellar hook-length control protein; KEGG: son:SO3223 flagellar hook-length control protein FliK; flagellar hook-length control protein 1621146 4660279 Sputw3181_1432 Shewanella sp. W3-18-1 flagellar hook-length control protein YP_962829.1 1619671 D 351745 CDS YP_962830.1 120598256 4660462 1621238..1621753 1 NC_008750.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1621753 fliL 4660462 fliL Shewanella sp. W3-18-1 flagellar basal body-associated protein FliL YP_962830.1 1621238 D 351745 CDS YP_962831.1 120598257 4660233 1621793..1622824 1 NC_008750.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1622824 fliM 4660233 fliM Shewanella sp. W3-18-1 flagellar motor switch protein FliM YP_962831.1 1621793 D 351745 CDS YP_962832.1 120598258 4660215 1622836..1623219 1 NC_008750.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1623219 fliN 4660215 fliN Shewanella sp. W3-18-1 flagellar motor switch protein YP_962832.1 1622836 D 351745 CDS YP_962833.1 120598259 4660197 1623246..1623665 1 NC_008750.1 PFAM: flagellar biosynthesis protein, FliO; KEGG: she:Shewmr4_1291 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein, FliO 1623665 4660197 Sputw3181_1436 Shewanella sp. W3-18-1 flagellar biosynthesis protein, FliO YP_962833.1 1623246 D 351745 CDS YP_962834.1 120598260 4660503 1623662..1624408 1 NC_008750.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1624408 fliP 4660503 fliP Shewanella sp. W3-18-1 flagellar biosynthesis protein FliP YP_962834.1 1623662 D 351745 CDS YP_962835.1 120598261 4660535 1624426..1624695 1 NC_008750.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: son:SO3217 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 1624695 4660535 Sputw3181_1438 Shewanella sp. W3-18-1 flagellar biosynthetic protein FliQ YP_962835.1 1624426 D 351745 CDS YP_962836.1 120598262 4660561 1624700..1625497 1 NC_008750.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1625497 fliR 4660561 fliR Shewanella sp. W3-18-1 flagellar biosynthesis protein FliR YP_962836.1 1624700 D 351745 CDS YP_962837.1 120598263 4660637 1625515..1626645 1 NC_008750.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1626645 flhB 4660637 flhB Shewanella sp. W3-18-1 flagellar biosynthesis protein FlhB YP_962837.1 1625515 D 351745 CDS YP_962838.1 120598264 4660697 1626738..1628837 1 NC_008750.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1628837 flhA 4660697 flhA Shewanella sp. W3-18-1 flagellar biosynthesis protein FlhA YP_962838.1 1626738 D 351745 CDS YP_962839.1 120598265 4660752 1628849..1630231 1 NC_008750.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1630231 flhF 4660752 flhF Shewanella sp. W3-18-1 flagellar biosynthesis regulator FlhF YP_962839.1 1628849 D 351745 CDS YP_962840.1 120598266 4660793 1630236..1631117 1 NC_008750.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: shm:Shewmr7_1365 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1631117 4660793 Sputw3181_1443 Shewanella sp. W3-18-1 cobyrinic acid a,c-diamide synthase YP_962840.1 1630236 D 351745 CDS YP_962841.1 120598267 4660808 1631110..1631823 1 NC_008750.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1631823 fliA 4660808 fliA Shewanella sp. W3-18-1 flagellar biosynthesis sigma factor YP_962841.1 1631110 D 351745 CDS YP_962842.1 120598268 4660815 1631883..1632254 1 NC_008750.1 PFAM: response regulator receiver; KEGG: sfr:Sfri_1200 response regulator receiver protein; response regulator receiver protein 1632254 4660815 Sputw3181_1445 Shewanella sp. W3-18-1 response regulator receiver protein YP_962842.1 1631883 D 351745 CDS YP_962843.1 120598269 4660822 1632268..1633005 1 NC_008750.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: shm:Shewmr7_1368 chemotaxis phosphatase, CheZ; chemotaxis phosphatase, CheZ 1633005 4660822 Sputw3181_1446 Shewanella sp. W3-18-1 chemotaxis phosphatase, CheZ YP_962843.1 1632268 D 351745 CDS YP_962844.1 120598270 4660829 1633021..1635240 1 NC_008750.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: she:Shewmr4_1302 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 1635240 4660829 Sputw3181_1447 Shewanella sp. W3-18-1 CheA signal transduction histidine kinase YP_962844.1 1633021 D 351745 CDS YP_962845.1 120598271 4660836 1635261..1636379 1 NC_008750.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1636379 4660836 Sputw3181_1448 Shewanella sp. W3-18-1 chemotaxis-specific methylesterase YP_962845.1 1635261 D 351745 CDS YP_962846.1 120598272 4660842 1636402..1636836 1 NC_008750.1 KEGG: she:Shewmr4_1304 hypothetical protein; hypothetical protein 1636836 4660842 Sputw3181_1449 Shewanella sp. W3-18-1 hypothetical protein YP_962846.1 1636402 D 351745 CDS YP_962847.1 120598273 4660882 1636894..1637685 1 NC_008750.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3204 ParA family protein; cobyrinic acid a,c-diamide synthase 1637685 4660882 Sputw3181_1450 Shewanella sp. W3-18-1 cobyrinic acid a,c-diamide synthase YP_962847.1 1636894 D 351745 CDS YP_962848.1 120598274 4660935 1637669..1638661 1 NC_008750.1 PFAM: CheW domain protein; KEGG: she:Shewmr4_1306 CheW protein; putative CheW protein 1638661 4660935 Sputw3181_1451 Shewanella sp. W3-18-1 putative CheW protein YP_962848.1 1637669 D 351745 CDS YP_962849.1 120598275 4661544 1638669..1639163 1 NC_008750.1 PFAM: CheW domain protein; KEGG: shm:Shewmr7_1374 CheW protein; putative CheW protein 1639163 4661544 Sputw3181_1452 Shewanella sp. W3-18-1 putative CheW protein YP_962849.1 1638669 D 351745 CDS YP_962850.1 120598276 4661200 1639334..1639732 1 NC_008750.1 KEGG: shm:Shewmr7_1375 hypothetical protein; hypothetical protein 1639732 4661200 Sputw3181_1453 Shewanella sp. W3-18-1 hypothetical protein YP_962850.1 1639334 D 351745 CDS YP_962851.1 120598277 4661161 complement(1640178..1640489) 1 NC_008750.1 KEGG: shm:Shewmr7_1376 FlhB domain protein; FlhB domain-containing protein 1640489 4661161 Sputw3181_1454 Shewanella sp. W3-18-1 FlhB domain-containing protein YP_962851.1 1640178 R 351745 CDS YP_962852.1 120598278 4661127 complement(1640530..1642449) 1 NC_008750.1 KEGG: she:Shewmr4_1310 hypothetical protein; hypothetical protein 1642449 4661127 Sputw3181_1455 Shewanella sp. W3-18-1 hypothetical protein YP_962852.1 1640530 R 351745 CDS YP_962853.1 120598279 4661071 1642680..1643462 1 NC_008750.1 PFAM: VacJ family lipoprotein; KEGG: shm:Shewmr7_1378 VacJ family lipoprotein; VacJ family lipoprotein 1643462 4661071 Sputw3181_1456 Shewanella sp. W3-18-1 VacJ family lipoprotein YP_962853.1 1642680 D 351745 CDS YP_962854.1 120598280 4661018 1643582..1644712 1 NC_008750.1 PFAM: response regulator receiver; KEGG: shm:Shewmr7_1379 response regulator receiver protein; response regulator receiver protein 1644712 4661018 Sputw3181_1457 Shewanella sp. W3-18-1 response regulator receiver protein YP_962854.1 1643582 D 351745 CDS YP_962855.1 120598281 4658386 complement(1645629..1647134) 1 NC_008750.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1380 amino acid/peptide transporter; amino acid/peptide transporter 1647134 4658386 Sputw3181_1459 Shewanella sp. W3-18-1 amino acid/peptide transporter YP_962855.1 1645629 R 351745 CDS YP_962856.1 120598282 4661777 1647608..1648114 1 NC_008750.1 KEGG: son:SO3194 transcriptional activator rfaH, putative; TIGRFAM: transcriptional activator RfaH; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; NusG antitermination factor 1648114 4661777 Sputw3181_1460 Shewanella sp. W3-18-1 NusG antitermination factor YP_962856.1 1647608 D 351745 CDS YP_962857.1 120598283 4661742 1650150..1652636 1 NC_008750.1 PFAM: polysaccharide export protein; KEGG: she:Shewmr4_1315 polysaccharide export protein; polysaccharide export protein 1652636 4661742 Sputw3181_1461 Shewanella sp. W3-18-1 polysaccharide export protein YP_962857.1 1650150 D 351745 CDS YP_962858.1 120598284 4661697 1652826..1653752 1 NC_008750.1 PFAM: lipopolysaccharide biosynthesis; KEGG: shm:Shewmr7_1384 lipopolysaccharide biosynthesis; lipopolysaccharide biosynthesis protein 1653752 4661697 Sputw3181_1462 Shewanella sp. W3-18-1 lipopolysaccharide biosynthesis protein YP_962858.1 1652826 D 351745 CDS YP_962859.1 120598285 4661658 1653957..1655036 1 NC_008750.1 NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase 1655036 4661658 Sputw3181_1463 Shewanella sp. W3-18-1 dTDP-glucose-4,6-dehydratase YP_962859.1 1653957 D 351745 CDS YP_962860.1 120598286 4661655 1655105..1655968 1 NC_008750.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sfr:Sfri_2829 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1655968 4661655 Sputw3181_1464 Shewanella sp. W3-18-1 glucose-1-phosphate thymidylyltransferase YP_962860.1 1655105 D 351745 CDS YP_962861.1 120598287 4661594 1656059..1656985 1 NC_008750.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sdn:Sden_2661 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1656985 4661594 Sputw3181_1465 Shewanella sp. W3-18-1 dTDP-4-dehydrorhamnose reductase YP_962861.1 1656059 D 351745 CDS YP_962862.1 120598288 4661575 1657079..1657627 1 NC_008750.1 KEGG: sbo:SBO_0865 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1657627 4661575 Sputw3181_1466 Shewanella sp. W3-18-1 dTDP-4-dehydrorhamnose 3,5-epimerase YP_962862.1 1657079 D 351745 CDS YP_962863.1 120598289 4661553 1657627..1659057 1 NC_008750.1 PFAM: polysaccharide biosynthesis protein; KEGG: she:Shewmr4_1320 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1659057 4661553 Sputw3181_1467 Shewanella sp. W3-18-1 polysaccharide biosynthesis protein YP_962863.1 1657627 D 351745 CDS YP_962864.1 120598290 4661529 1659095..1660204 1 NC_008750.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: she:Shewmr4_1321 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1660204 4661529 Sputw3181_1468 Shewanella sp. W3-18-1 DegT/DnrJ/EryC1/StrS aminotransferase YP_962864.1 1659095 D 351745 CDS YP_962865.1 120598291 4661524 1660209..1660769 1 NC_008750.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: she:Shewmr4_1322 acetyltransferase RfbO, CysE/LacA/LpxA/NodL family; hexapaptide repeat-containing transferase 1660769 4661524 Sputw3181_1469 Shewanella sp. W3-18-1 hexapaptide repeat-containing transferase YP_962865.1 1660209 D 351745 CDS YP_962866.1 120598292 4661489 1660805..1661419 1 NC_008750.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN4077 chloramphenicol acetyltransferase; hexapaptide repeat-containing transferase 1661419 4661489 Sputw3181_1470 Shewanella sp. W3-18-1 hexapaptide repeat-containing transferase YP_962866.1 1660805 D 351745 CDS YP_962867.1 120598293 4661481 1661412..1662359 1 NC_008750.1 PFAM: glycosyl transferase, family 2; KEGG: plt:Plut_0769 glycosyltransferase involved in cell wall biogenesis-like; glycosyl transferase family protein 1662359 4661481 Sputw3181_1471 Shewanella sp. W3-18-1 glycosyl transferase family protein YP_962867.1 1661412 D 351745 CDS YP_962868.1 120598294 4661480 complement(1662511..1663761) 1 NC_008750.1 PFAM: transposase, IS4 family protein; KEGG: sak:SAK_2050 IS10R, transposase; transposase, IS4 family protein 1663761 4661480 Sputw3181_1472 Shewanella sp. W3-18-1 transposase, IS4 family protein YP_962868.1 1662511 R 351745 CDS YP_962869.1 120598295 4661337 1663835..1664164 1 NC_008750.1 KEGG: shm:Shewmr7_1399 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 1664164 4661337 Sputw3181_1473 Shewanella sp. W3-18-1 dTDP-glucose 4,6-dehydratase YP_962869.1 1663835 D 351745 CDS YP_962870.1 120598296 4661441 1664547..1664855 1 NC_008750.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: nme:NMB0047 putative endonuclease; excinuclease ABC subunit C 1664855 4661441 Sputw3181_1474 Shewanella sp. W3-18-1 excinuclease ABC subunit C YP_962870.1 1664547 D 351745 CDS YP_962871.1 120598297 4658364 1667284..1667820 1 NC_008750.1 KEGG: she:Shewmr4_1339 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1667820 4658364 Sputw3181_1476 Shewanella sp. W3-18-1 dTDP-4-dehydrorhamnose 3,5-epimerase YP_962871.1 1667284 D 351745 CDS YP_962872.1 120598298 4661371 1668548..1669621 1 NC_008750.1 TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: shm:Shewmr7_1396 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 1669621 4661371 Sputw3181_1477 Shewanella sp. W3-18-1 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_962872.1 1668548 D 351745 CDS YP_962873.1 120598299 4661262 complement(1670948..1671424) 1 NC_008750.1 hypothetical protein 1671424 4661262 Sputw3181_1480 Shewanella sp. W3-18-1 hypothetical protein YP_962873.1 1670948 R 351745 CDS YP_962874.1 120598300 4661294 complement(1671445..1671891) 1 NC_008750.1 PFAM: copper resistance lipoprotein NlpE; KEGG: son:SO3163 lipoprotein; copper resistance lipoprotein NlpE 1671891 4661294 Sputw3181_1481 Shewanella sp. W3-18-1 copper resistance lipoprotein NlpE YP_962874.1 1671445 R 351745 CDS YP_962875.1 120598301 4657691 1672265..1673614 1 NC_008750.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; KEGG: son:SO3162 sensor histidine kinase; GAF sensor signal transduction histidine kinase 1673614 4657691 Sputw3181_1482 Shewanella sp. W3-18-1 GAF sensor signal transduction histidine kinase YP_962875.1 1672265 D 351745 CDS YP_962876.1 120598302 4658623 1674397..1674699 1 NC_008750.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: nme:NMB0047 putative endonuclease; excinuclease ABC subunit C 1674699 4658623 Sputw3181_1484 Shewanella sp. W3-18-1 excinuclease ABC subunit C YP_962876.1 1674397 D 351745 CDS YP_962877.1 120598303 4661213 complement(1675547..1677913) 1 NC_008750.1 PFAM: protein of unknown function DUF940, membrane lipoprotein putative; KEGG: shm:Shewmr7_1405 protein of unknown function DUF940, membrane lipoprotein putative; hypothetical protein 1677913 4661213 Sputw3181_1485 Shewanella sp. W3-18-1 hypothetical protein YP_962877.1 1675547 R 351745 CDS YP_962878.1 120598304 4660643 complement(1677913..1678698) 1 NC_008750.1 PFAM: protein of unknown function DUF1017; KEGG: shm:Shewmr7_1406 protein of unknown function DUF1017; hypothetical protein 1678698 4660643 Sputw3181_1486 Shewanella sp. W3-18-1 hypothetical protein YP_962878.1 1677913 R 351745 CDS YP_962879.1 120598305 4660357 complement(1678707..1679417) 1 NC_008750.1 KEGG: she:Shewmr4_1342 lipoprotein, putative; putative lipoprotein 1679417 4660357 Sputw3181_1487 Shewanella sp. W3-18-1 putative lipoprotein YP_962879.1 1678707 R 351745 CDS YP_962880.1 120598306 4660557 complement(1679565..1679816) 1 NC_008750.1 KEGG: she:Shewmr4_1343 hypothetical protein; hypothetical protein 1679816 4660557 Sputw3181_1488 Shewanella sp. W3-18-1 hypothetical protein YP_962880.1 1679565 R 351745 CDS YP_962881.1 120598307 4660895 1680300..1681424 1 NC_008750.1 PFAM: Patatin; KEGG: shm:Shewmr7_1409 patatin; patatin 1681424 4660895 Sputw3181_1489 Shewanella sp. W3-18-1 patatin YP_962881.1 1680300 D 351745 CDS YP_962882.1 120598308 4660465 complement(1681567..1683282) 1 NC_008750.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1683282 4660465 Sputw3181_1490 Shewanella sp. W3-18-1 prolyl-tRNA synthetase YP_962882.1 1681567 R 351745 CDS YP_962883.1 120598309 4660269 complement(1683496..1684125) 1 NC_008750.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: shm:Shewmr7_1411 transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase 1684125 4660269 Sputw3181_1491 Shewanella sp. W3-18-1 hexapaptide repeat-containing transferase YP_962883.1 1683496 R 351745 CDS YP_962884.1 120598310 4660091 complement(1684126..1684860) 1 NC_008750.1 PFAM: protein of unknown function UPF0066; KEGG: she:Shewmr4_1347 protein of unknown function UPF0066; hypothetical protein 1684860 4660091 Sputw3181_1492 Shewanella sp. W3-18-1 hypothetical protein YP_962884.1 1684126 R 351745 CDS YP_962885.1 120598311 4659835 complement(1684999..1685379) 1 NC_008750.1 KEGG: shm:Shewmr7_1413 lipoprotein, putative; putative lipoprotein 1685379 4659835 Sputw3181_1493 Shewanella sp. W3-18-1 putative lipoprotein YP_962885.1 1684999 R 351745 CDS YP_962886.1 120598312 4659781 complement(1685456..1686772) 1 NC_008750.1 KEGG: son:SO3149 hypothetical protein; hypothetical protein 1686772 4659781 Sputw3181_1494 Shewanella sp. W3-18-1 hypothetical protein YP_962886.1 1685456 R 351745 CDS YP_962887.1 120598313 4659798 complement(1686772..1689861) 1 NC_008750.1 PFAM: amidohydrolase; KEGG: shm:Shewmr7_1415 amidohydrolase; amidohydrolase 1689861 4659798 Sputw3181_1495 Shewanella sp. W3-18-1 amidohydrolase YP_962887.1 1686772 R 351745 CDS YP_962888.1 120598314 4659954 complement(1690078..1690470) 1 NC_008750.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: shm:Shewmr7_1416 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 1690470 4659954 Sputw3181_1496 Shewanella sp. W3-18-1 histone family protein nucleoid-structuring protein H-NS YP_962888.1 1690078 R 351745 CDS YP_962889.1 120598315 4659783 1690783..1691532 1 NC_008750.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: shm:Shewmr7_1417 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 1691532 4659783 Sputw3181_1497 Shewanella sp. W3-18-1 electron transfer flavoprotein subunit beta YP_962889.1 1690783 D 351745 CDS YP_962890.1 120598316 4659907 1691533..1692459 1 NC_008750.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: shm:Shewmr7_1418 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 1692459 4659907 Sputw3181_1498 Shewanella sp. W3-18-1 electron transfer flavoprotein subunit alpha YP_962890.1 1691533 D 351745 CDS YP_962891.1 120598317 4659764 1692832..1694400 1 NC_008750.1 PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_1419 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 1694400 4659764 Sputw3181_1499 Shewanella sp. W3-18-1 Na+/H+ antiporter NhaC YP_962891.1 1692832 D 351745 CDS YP_962892.1 120598318 4659423 complement(1694472..1696625) 1 NC_008750.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: shm:Shewmr7_1420 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp 1696625 4659423 Sputw3181_1500 Shewanella sp. W3-18-1 peptidyl-dipeptidase Dcp YP_962892.1 1694472 R 351745 CDS YP_962893.1 120598319 4659370 complement(1696826..1698928) 1 NC_008750.1 KEGG: she:Shewmr4_1356 hypothetical protein; hypothetical protein 1698928 4659370 Sputw3181_1501 Shewanella sp. W3-18-1 hypothetical protein YP_962893.1 1696826 R 351745 CDS YP_962894.1 120598320 4661818 1699471..1700049 1 NC_008750.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1700049 4661818 Sputw3181_1502 Shewanella sp. W3-18-1 thymidine kinase YP_962894.1 1699471 D 351745 CDS YP_962895.1 120598321 4659301 1700152..1703223 1 NC_008750.1 KEGG: she:Shewmr4_1358 hypothetical protein; hypothetical protein 1703223 4659301 Sputw3181_1503 Shewanella sp. W3-18-1 hypothetical protein YP_962895.1 1700152 D 351745 CDS YP_962896.1 120598322 4659285 complement(1703330..1704709) 1 NC_008750.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_1424 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator 1704709 4659285 Sputw3181_1504 Shewanella sp. W3-18-1 two component, sigma54 specific, Fis family transcriptional regulator YP_962896.1 1703330 R 351745 CDS YP_962897.1 120598323 4659260 complement(1704706..1706517) 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_1360 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1706517 4659260 Sputw3181_1505 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_962897.1 1704706 R 351745 CDS YP_962898.1 120598324 4659077 complement(1706629..1708026) 1 NC_008750.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: shm:Shewmr7_1426 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 1708026 4659077 Sputw3181_1506 Shewanella sp. W3-18-1 TRAP dicarboxylate transporter subunit DctM YP_962898.1 1706629 R 351745 CDS YP_962899.1 120598325 4659205 complement(1708026..1708670) 1 NC_008750.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: she:Shewmr4_1362 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 1708670 4659205 Sputw3181_1507 Shewanella sp. W3-18-1 tripartite ATP-independent periplasmic transporter DctQ YP_962899.1 1708026 R 351745 CDS YP_962900.1 120598326 4659182 complement(1708733..1709755) 1 NC_008750.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: shm:Shewmr7_1428 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 1709755 4659182 Sputw3181_1508 Shewanella sp. W3-18-1 TRAP dicarboxylate transporter subunit DctP YP_962900.1 1708733 R 351745 CDS YP_962901.1 120598327 4658801 1711295..1712704 1 NC_008750.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1712704 gltX 4658801 gltX Shewanella sp. W3-18-1 glutamyl-tRNA synthetase YP_962901.1 1711295 D 351745 CDS YP_962902.1 120598328 4659488 complement(1715173..1717002) 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_1366 ABC transporter related; ABC transporter-like protein 1717002 4659488 Sputw3181_1510 Shewanella sp. W3-18-1 ABC transporter-like protein YP_962902.1 1715173 R 351745 CDS YP_962903.1 120598329 4658803 1717487..1719178 1 NC_008750.1 PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: son:SO3127 Ada regulatory protein, putative; alcohol dehydrogenase 1719178 4658803 Sputw3181_1511 Shewanella sp. W3-18-1 alcohol dehydrogenase YP_962903.1 1717487 D 351745 CDS YP_962904.1 120598330 4658548 1719224..1719781 1 NC_008750.1 KEGG: shm:Shewmr7_1433 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 1719781 4658548 Sputw3181_1512 Shewanella sp. W3-18-1 methylated-DNA--protein-cysteine methyltransferase YP_962904.1 1719224 D 351745 CDS YP_962905.1 120598331 4658774 1719829..1721112 1 NC_008750.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_1434 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 1721112 4658774 Sputw3181_1513 Shewanella sp. W3-18-1 DEAD/DEAH box helicase YP_962905.1 1719829 D 351745 CDS YP_962906.1 120598332 4658460 1721177..1721647 1 NC_008750.1 PFAM: Dual specificity protein phosphatase; KEGG: son:SO3124 tyrosine-specific protein phosphatase, putative; dual specificity protein phosphatase 1721647 4658460 Sputw3181_1514 Shewanella sp. W3-18-1 dual specificity protein phosphatase YP_962906.1 1721177 D 351745 CDS YP_962907.1 120598333 4661010 1721779..1722678 1 NC_008750.1 PFAM: response regulator receiver; CheW domain protein; KEGG: shm:Shewmr7_1437 response regulator receiver modulated CheW protein; putative CheW protein 1722678 4661010 Sputw3181_1515 Shewanella sp. W3-18-1 putative CheW protein YP_962907.1 1721779 D 351745 CDS YP_962908.1 120598334 4658550 1722832..1724058 1 NC_008750.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 1724058 4658550 Sputw3181_1516 Shewanella sp. W3-18-1 serine/threonine transporter SstT YP_962908.1 1722832 D 351745 CDS YP_962909.1 120598335 4658697 1724123..1724659 1 NC_008750.1 PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: son:SO3121 hypothetical protein; NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 1724659 4658697 Sputw3181_1517 Shewanella sp. W3-18-1 NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 YP_962909.1 1724123 D 351745 CDS YP_962910.1 120598336 4661566 complement(1724722..1726101) 1 NC_008750.1 PFAM: oxidoreductase domain protein; KEGG: shm:Shewmr7_1440 twin-arginine translocation pathway signal; oxidoreductase domain-containing protein 1726101 4661566 Sputw3181_1518 Shewanella sp. W3-18-1 oxidoreductase domain-containing protein YP_962910.1 1724722 R 351745 CDS YP_962911.1 120598337 4658466 1726424..1726858 1 NC_008750.1 KEGG: son:SO3119 hypothetical protein; hypothetical protein 1726858 4658466 Sputw3181_1519 Shewanella sp. W3-18-1 hypothetical protein YP_962911.1 1726424 D 351745 CDS YP_962912.1 120598338 4658504 complement(1726915..1727586) 1 NC_008750.1 PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_1442 pseudouridylate synthase; pseudouridylate synthase 1727586 4658504 Sputw3181_1520 Shewanella sp. W3-18-1 pseudouridylate synthase YP_962912.1 1726915 R 351745 CDS YP_962913.1 120598339 4661328 complement(1727805..1728440) 1 NC_008750.1 PFAM: protein of unknown function DUF479; KEGG: shm:Shewmr7_1444 protein of unknown function DUF479; hypothetical protein 1728440 4661328 Sputw3181_1521 Shewanella sp. W3-18-1 hypothetical protein YP_962913.1 1727805 R 351745 CDS YP_962914.1 120598340 4658587 1728526..1728744 1 NC_008750.1 KEGG: son:SO3115 hypothetical protein; hypothetical protein 1728744 4658587 Sputw3181_1522 Shewanella sp. W3-18-1 hypothetical protein YP_962914.1 1728526 D 351745 CDS YP_962915.1 120598341 4658192 1728801..1729838 1 NC_008750.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1729838 queA 4658192 queA Shewanella sp. W3-18-1 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_962915.1 1728801 D 351745 CDS YP_962916.1 120598342 4658150 1729998..1731122 1 NC_008750.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1731122 tgt 4658150 tgt Shewanella sp. W3-18-1 queuine tRNA-ribosyltransferase YP_962916.1 1729998 D 351745 CDS YP_962917.1 120598343 4658126 1731150..1731482 1 NC_008750.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1731482 yajC 4658126 yajC Shewanella sp. W3-18-1 preprotein translocase subunit YajC YP_962917.1 1731150 D 351745 CDS YP_962918.1 120598344 4658044 1731500..1733350 1 NC_008750.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1733350 secD 4658044 secD Shewanella sp. W3-18-1 preprotein translocase subunit SecD YP_962918.1 1731500 D 351745 CDS YP_962919.1 120598345 4657703 1733363..1734310 1 NC_008750.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1734310 secF 4657703 secF Shewanella sp. W3-18-1 preprotein translocase subunit SecF YP_962919.1 1733363 D 351745 CDS YP_962920.1 120598346 4657986 1734544..1734861 1 NC_008750.1 KEGG: shm:Shewmr7_1451 hypothetical protein; hypothetical protein 1734861 4657986 Sputw3181_1528 Shewanella sp. W3-18-1 hypothetical protein YP_962920.1 1734544 D 351745 CDS YP_962921.1 120598347 4657957 1735015..1735926 1 NC_008750.1 TIGRFAM: siroheme synthase; KEGG: son:SO3108 precorrin-2 oxidase / ferrochelatase; siroheme synthase 1735926 4657957 Sputw3181_1529 Shewanella sp. W3-18-1 siroheme synthase YP_962921.1 1735015 D 351745 CDS YP_962922.1 120598348 4657685 1736021..1736566 1 NC_008750.1 PFAM: YaeQ family protein; KEGG: son:SO3107 hypothetical protein; YaeQ family protein 1736566 4657685 Sputw3181_1530 Shewanella sp. W3-18-1 YaeQ family protein YP_962922.1 1736021 D 351745 CDS YP_962923.1 120598349 4660917 complement(1736623..1739094) 1 NC_008750.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: shm:Shewmr7_1455 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 1739094 4660917 Sputw3181_1531 Shewanella sp. W3-18-1 peptidase S8/S53 subtilisin kexin sedolisin YP_962923.1 1736623 R 351745 CDS YP_962924.1 120598350 4657672 complement(1739623..1739988) 1 NC_008750.1 PFAM: Rhodanese domain protein; KEGG: son:SO3105 phage shock protein E; rhodanese domain-containing protein 1739988 4657672 Sputw3181_1532 Shewanella sp. W3-18-1 rhodanese domain-containing protein YP_962924.1 1739623 R 351745 CDS YP_962925.1 120598351 4657808 complement(1740035..1740247) 1 NC_008750.1 KEGG: shm:Shewmr7_1457 hypothetical protein; hypothetical protein 1740247 4657808 Sputw3181_1533 Shewanella sp. W3-18-1 hypothetical protein YP_962925.1 1740035 R 351745 CDS YP_962926.1 120598352 4661831 complement(1740289..1743516) 1 NC_008750.1 PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1393 acriflavin resistance protein; acriflavin resistance protein 1743516 4661831 Sputw3181_1534 Shewanella sp. W3-18-1 acriflavin resistance protein YP_962926.1 1740289 R 351745 CDS YP_962927.1 120598353 4661877 complement(1743542..1744564) 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_1394 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1744564 4661877 Sputw3181_1535 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_962927.1 1743542 R 351745 CDS YP_962928.1 120598354 4661117 complement(1744735..1745451) 1 NC_008750.1 PFAM: protein of unknown function DUF541; KEGG: shm:Shewmr7_1460 protein of unknown function DUF541; hypothetical protein 1745451 4661117 Sputw3181_1536 Shewanella sp. W3-18-1 hypothetical protein YP_962928.1 1744735 R 351745 CDS YP_962929.1 120598355 4657778 complement(1745559..1745945) 1 NC_008750.1 KEGG: shm:Shewmr7_1461 hypothetical protein; hypothetical protein 1745945 4657778 Sputw3181_1537 Shewanella sp. W3-18-1 hypothetical protein YP_962929.1 1745559 R 351745 CDS YP_962930.1 120598356 4657800 complement(1746050..1747381) 1 NC_008750.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO3099 long-chain fatty acid transport protein, putative; aromatic hydrocarbon degradation membrane protein 1747381 4657800 Sputw3181_1538 Shewanella sp. W3-18-1 aromatic hydrocarbon degradation membrane protein YP_962930.1 1746050 R 351745 CDS YP_962931.1 120598357 4657862 complement(1747703..1749196) 1 NC_008750.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: shm:Shewmr7_1463 sodium/proline symporter; sodium/proline symporter 1749196 4657862 Sputw3181_1539 Shewanella sp. W3-18-1 sodium/proline symporter YP_962931.1 1747703 R 351745 CDS YP_962932.1 120598358 4657891 complement(1749311..1750015) 1 NC_008750.1 KEGG: she:Shewmr4_1399 hypothetical protein; hypothetical protein 1750015 4657891 Sputw3181_1540 Shewanella sp. W3-18-1 hypothetical protein YP_962932.1 1749311 R 351745 CDS YP_962933.1 120598359 4657901 complement(1750008..1750571) 1 NC_008750.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1750571 4657901 Sputw3181_1541 Shewanella sp. W3-18-1 RNA polymerase sigma factor YP_962933.1 1750008 R 351745 CDS YP_962934.1 120598360 4657946 complement(1750647..1752290) 1 NC_008750.1 KEGG: shm:Shewmr7_1466 hypothetical protein; hypothetical protein 1752290 4657946 Sputw3181_1542 Shewanella sp. W3-18-1 hypothetical protein YP_962934.1 1750647 R 351745 CDS YP_962935.1 120598361 4657951 complement(1752284..1754275) 1 NC_008750.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: von Willebrand factor, type A; Tetratricopeptide domain protein; KEGG: she:Shewmr4_1402 tetratricopeptide TPR_2 repeat protein; hypothetical protein 1754275 4657951 Sputw3181_1543 Shewanella sp. W3-18-1 hypothetical protein YP_962935.1 1752284 R 351745 CDS YP_962936.1 120598362 4657972 complement(1754275..1755294) 1 NC_008750.1 PFAM: von Willebrand factor, type A; KEGG: shm:Shewmr7_1468 von Willebrand factor, type A; von Willebrand factor type A domain-containing protein 1755294 4657972 Sputw3181_1544 Shewanella sp. W3-18-1 von Willebrand factor type A domain-containing protein YP_962936.1 1754275 R 351745 CDS YP_962937.1 120598363 4658040 complement(1755288..1755851) 1 NC_008750.1 KEGG: shm:Shewmr7_1469 hypothetical protein; hypothetical protein 1755851 4658040 Sputw3181_1545 Shewanella sp. W3-18-1 hypothetical protein YP_962937.1 1755288 R 351745 CDS YP_962938.1 120598364 4658042 complement(1755931..1756884) 1 NC_008750.1 PFAM: protein of unknown function DUF58; KEGG: son:SO3091 hypothetical protein; hypothetical protein 1756884 4658042 Sputw3181_1546 Shewanella sp. W3-18-1 hypothetical protein YP_962938.1 1755931 R 351745 CDS YP_962939.1 120598365 4658059 complement(1756909..1757916) 1 NC_008750.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: shm:Shewmr7_1471 ATPase associated with various cellular activities, AAA_3; ATPase 1757916 4658059 Sputw3181_1547 Shewanella sp. W3-18-1 ATPase YP_962939.1 1756909 R 351745 CDS YP_962940.1 120598366 4658132 1758128..1759438 1 NC_008750.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 1759438 fadI 4658132 fadI Shewanella sp. W3-18-1 3-ketoacyl-CoA thiolase YP_962940.1 1758128 D 351745 CDS YP_962941.1 120598367 4658154 1759444..1761564 1 NC_008750.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 1761564 fadJ 4658154 fadJ Shewanella sp. W3-18-1 multifunctional fatty acid oxidation complex subunit alpha YP_962941.1 1759444 D 351745 CDS YP_962942.1 120598368 4657737 1761893..1762093 1 NC_008750.1 KEGG: son:SO3087 hypothetical protein; hypothetical protein 1762093 4657737 Sputw3181_1550 Shewanella sp. W3-18-1 hypothetical protein YP_962942.1 1761893 D 351745 CDS YP_962943.1 120598369 4658195 complement(1762390..1763010) 1 NC_008750.1 KEGG: she:Shewmr4_1410 hypothetical protein; hypothetical protein 1763010 4658195 Sputw3181_1551 Shewanella sp. W3-18-1 hypothetical protein YP_962943.1 1762390 R 351745 CDS YP_962944.1 120598370 4657742 complement(1763120..1767430) 1 NC_008750.1 KEGG: she:Shewmr4_1411 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 1767430 4657742 Sputw3181_1552 Shewanella sp. W3-18-1 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_962944.1 1763120 R 351745 CDS YP_962945.1 120598371 4658209 complement(1767682..1770471) 1 NC_008750.1 PFAM: peptidase M16 domain protein; KEGG: shm:Shewmr7_1477 peptidase M16 domain protein; peptidase M16 domain-containing protein 1770471 4658209 Sputw3181_1553 Shewanella sp. W3-18-1 peptidase M16 domain-containing protein YP_962945.1 1767682 R 351745 CDS YP_962946.1 120598372 4658255 1770902..1771372 1 NC_008750.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: she:Shewmr4_1413 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase, SixA 1771372 4658255 Sputw3181_1554 Shewanella sp. W3-18-1 phosphohistidine phosphatase, SixA YP_962946.1 1770902 D 351745 CDS YP_962947.1 120598373 4657754 complement(1771450..1771980) 1 NC_008750.1 PFAM: Smr protein/MutS2; KEGG: son:SO3081 Smr domain protein; hypothetical protein 1771980 4657754 Sputw3181_1555 Shewanella sp. W3-18-1 hypothetical protein YP_962947.1 1771450 R 351745 CDS YP_962948.1 120598374 4658298 1772062..1773006 1 NC_008750.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1773006 4658298 Sputw3181_1556 Shewanella sp. W3-18-1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_962948.1 1772062 D 351745 CDS YP_962949.1 120598375 4658342 1773130..1774224 1 NC_008750.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1774224 4658342 Sputw3181_1557 Shewanella sp. W3-18-1 chorismate synthase YP_962949.1 1773130 D 351745 CDS YP_962950.1 120598376 4658650 1774306..1775481 1 NC_008750.1 PFAM: nucleoside:H+ symporter; major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1482 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1775481 4658650 Sputw3181_1558 Shewanella sp. W3-18-1 major facilitator superfamily transporter YP_962950.1 1774306 D 351745 CDS YP_962951.1 120598377 4658672 1775532..1776710 1 NC_008750.1 PFAM: ATP-NAD/AcoX kinase; KEGG: son:SO3077 hypothetical protein; ATP-NAD/AcoX kinase 1776710 4658672 Sputw3181_1559 Shewanella sp. W3-18-1 ATP-NAD/AcoX kinase YP_962951.1 1775532 D 351745 CDS YP_962952.1 120598378 4658440 1776715..1776999 1 NC_008750.1 KEGG: she:Shewmr4_1419 hypothetical protein; hypothetical protein 1776999 4658440 Sputw3181_1560 Shewanella sp. W3-18-1 hypothetical protein YP_962952.1 1776715 D 351745 CDS YP_962953.1 120598379 4658728 1776989..1777777 1 NC_008750.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: shm:Shewmr7_1485 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 1777777 4658728 Sputw3181_1561 Shewanella sp. W3-18-1 tRNA/rRNA methyltransferase SpoU YP_962953.1 1776989 D 351745 CDS YP_962954.1 120598380 4658734 complement(1777855..1779897) 1 NC_008750.1 PFAM: FAD dependent oxidoreductase; KEGG: she:Shewmr4_1421 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1779897 4658734 Sputw3181_1562 Shewanella sp. W3-18-1 FAD dependent oxidoreductase YP_962954.1 1777855 R 351745 CDS YP_962955.1 120598381 4658777 1780012..1781247 1 NC_008750.1 PFAM: beta-ketoacyl synthase; KEGG: shm:Shewmr7_1487 beta-ketoacyl synthase; beta-ketoacyl synthase 1781247 4658777 Sputw3181_1563 Shewanella sp. W3-18-1 beta-ketoacyl synthase YP_962955.1 1780012 D 351745 CDS YP_962956.1 120598382 4658788 1781407..1782537 1 NC_008750.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO3071 erythronate-4-phosphate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 1782537 4658788 Sputw3181_1564 Shewanella sp. W3-18-1 D-isomer specific 2-hydroxyacid dehydrogenase YP_962956.1 1781407 D 351745 CDS YP_962957.1 120598383 4658791 1782540..1783556 1 NC_008750.1 KEGG: shm:Shewmr7_1489 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; aspartate-semialdehyde dehydrogenase 1783556 4658791 Sputw3181_1565 Shewanella sp. W3-18-1 aspartate-semialdehyde dehydrogenase YP_962957.1 1782540 D 351745 CDS YP_962958.1 120598384 4658566 1783734..1787027 1 NC_008750.1 KEGG: shm:Shewmr7_1490 hypothetical protein; hypothetical protein 1787027 4658566 Sputw3181_1566 Shewanella sp. W3-18-1 hypothetical protein YP_962958.1 1783734 D 351745 CDS YP_962959.1 120598385 4658822 1787130..1787915 1 NC_008750.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1787915 truA 4658822 truA Shewanella sp. W3-18-1 tRNA pseudouridine synthase A YP_962959.1 1787130 D 351745 CDS YP_962960.1 120598386 4658931 1787985..1789256 1 NC_008750.1 KEGG: she:Shewmr4_1427 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 1789256 4658931 Sputw3181_1568 Shewanella sp. W3-18-1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase YP_962960.1 1787985 D 351745 CDS YP_962961.1 120598387 4658945 1789240..1790019 1 NC_008750.1 PFAM: Sporulation domain protein; KEGG: shm:Shewmr7_1493 sporulation domain protein; sporulation domain-containing protein 1790019 4658945 Sputw3181_1569 Shewanella sp. W3-18-1 sporulation domain-containing protein YP_962961.1 1789240 D 351745 CDS YP_962962.1 120598388 4658948 1790134..1790622 1 NC_008750.1 PFAM: Colicin V production protein; KEGG: son:SO3065 colicin V production protein; colicin V production protein 1790622 4658948 Sputw3181_1570 Shewanella sp. W3-18-1 colicin V production protein YP_962962.1 1790134 D 351745 CDS YP_962963.1 120598389 4661338 1790754..1792268 1 NC_008750.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1792268 4661338 Sputw3181_1571 Shewanella sp. W3-18-1 amidophosphoribosyltransferase YP_962963.1 1790754 D 351745 CDS YP_962964.1 120598390 4659572 1792824..1794950 1 NC_008750.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1794950 4659572 Sputw3181_1573 Shewanella sp. W3-18-1 DNA topoisomerase III YP_962964.1 1792824 D 351745 CDS YP_962965.1 120598391 4659169 1795199..1796368 1 NC_008750.1 PFAM: porin, Gram-negative type; KEGG: son:SO3060 outer membrane porin, putative; porin 1796368 4659169 Sputw3181_1574 Shewanella sp. W3-18-1 porin YP_962965.1 1795199 D 351745 CDS YP_962966.1 120598392 4659179 complement(1796498..1798024) 1 NC_008750.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3059 formate hydrogenlyase transcriptional activator, putative; sigma-54 dependent trancsriptional regulator 1798024 4659179 Sputw3181_1575 Shewanella sp. W3-18-1 sigma-54 dependent trancsriptional regulator YP_962966.1 1796498 R 351745 CDS YP_962967.1 120598393 4659238 1798190..1799743 1 NC_008750.1 TIGRFAM: flavocytochrome c; PFAM: monooxygenase, FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO3058 flavocytochrome c flavin subunit, putative; flavocytochrome c 1799743 4659238 Sputw3181_1576 Shewanella sp. W3-18-1 flavocytochrome c YP_962967.1 1798190 D 351745 CDS YP_962968.1 120598394 4659099 1799784..1801421 1 NC_008750.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO3057 Pal/histidase family protein; phenylalanine/histidine ammonia-lyase 1801421 4659099 Sputw3181_1577 Shewanella sp. W3-18-1 phenylalanine/histidine ammonia-lyase YP_962968.1 1799784 D 351745 CDS YP_962969.1 120598395 4659332 1801440..1801847 1 NC_008750.1 KEGG: son:SO3056 tetraheme cytochrome c; tetraheme cytochrome c 1801847 4659332 Sputw3181_1578 Shewanella sp. W3-18-1 tetraheme cytochrome c YP_962969.1 1801440 D 351745 CDS YP_962970.1 120598396 4659131 complement(1802069..1803358) 1 NC_008750.1 PFAM: alpha/beta hydrolase fold; KEGG: she:Shewmr4_1434 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 1803358 4659131 Sputw3181_1579 Shewanella sp. W3-18-1 alpha/beta hydrolase fold domain-containing protein YP_962970.1 1802069 R 351745 CDS YP_962971.1 120598397 4659132 1803540..1804184 1 NC_008750.1 PFAM: beta-lactamase domain protein; KEGG: shm:Shewmr7_1500 beta-lactamase domain protein; beta-lactamase domain-containing protein 1804184 4659132 Sputw3181_1580 Shewanella sp. W3-18-1 beta-lactamase domain-containing protein YP_962971.1 1803540 D 351745 CDS YP_962972.1 120598398 4659444 1804426..1805442 1 NC_008750.1 PFAM: protein of unknown function DUF182; KEGG: she:Shewmr4_1437 protein of unknown function DUF182; hypothetical protein 1805442 4659444 Sputw3181_1581 Shewanella sp. W3-18-1 hypothetical protein YP_962972.1 1804426 D 351745 CDS YP_962973.1 120598399 4659137 1805451..1806116 1 NC_008750.1 KEGG: she:Shewmr4_1438 hypothetical protein; hypothetical protein 1806116 4659137 Sputw3181_1582 Shewanella sp. W3-18-1 hypothetical protein YP_962973.1 1805451 D 351745 CDS YP_962974.1 120598400 4659138 1806120..1806623 1 NC_008750.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: shm:Shewmr7_1504 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1806623 4659138 Sputw3181_1583 Shewanella sp. W3-18-1 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_962974.1 1806120 D 351745 CDS YP_962975.1 120598401 4659471 1806625..1808871 1 NC_008750.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: son:SO3048 isoquinoline 1-oxidoreductase, beta subunit, putative; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 1808871 4659471 Sputw3181_1584 Shewanella sp. W3-18-1 molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_962975.1 1806625 D 351745 CDS YP_962976.1 120598402 4659139 1809258..1809749 1 NC_008750.1 PFAM: protein of unknown function DUF1097; KEGG: shm:Shewmr7_1506 protein of unknown function DUF1097; hypothetical protein 1809749 4659139 Sputw3181_1585 Shewanella sp. W3-18-1 hypothetical protein YP_962976.1 1809258 D 351745 CDS YP_962977.1 120598403 4659480 1809877..1811331 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_1442 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1811331 4659480 Sputw3181_1586 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_962977.1 1809877 D 351745 CDS YP_962978.1 120598404 4659492 1811691..1812122 1 NC_008750.1 KEGG: son:SO3045 hypothetical protein; hypothetical protein 1812122 4659492 Sputw3181_1587 Shewanella sp. W3-18-1 hypothetical protein YP_962978.1 1811691 D 351745 CDS YP_962979.1 120598405 4659146 1812229..1812660 1 NC_008750.1 KEGG: shm:Shewmr7_1510 hypothetical protein; hypothetical protein 1812660 4659146 Sputw3181_1588 Shewanella sp. W3-18-1 hypothetical protein YP_962979.1 1812229 D 351745 CDS YP_962980.1 120598406 4659148 1812734..1813171 1 NC_008750.1 KEGG: rpe:RPE_3539 hypothetical protein; hypothetical protein 1813171 4659148 Sputw3181_1589 Shewanella sp. W3-18-1 hypothetical protein YP_962980.1 1812734 D 351745 CDS YP_962981.1 120598407 4659625 complement(1813307..1814119) 1 NC_008750.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 1814119 4659625 Sputw3181_1590 Shewanella sp. W3-18-1 exonuclease III YP_962981.1 1813307 R 351745 CDS YP_962982.1 120598408 4659609 complement(1814119..1814418) 1 NC_008750.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1814418 4659609 Sputw3181_1591 Shewanella sp. W3-18-1 YciI-like protein YP_962982.1 1814119 R 351745 CDS YP_962983.1 120598409 4659863 complement(1814418..1814963) 1 NC_008750.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1814963 4659863 Sputw3181_1592 Shewanella sp. W3-18-1 intracellular septation protein A YP_962983.1 1814418 R 351745 CDS YP_962984.1 120598410 4659888 complement(1815183..1816307) 1 NC_008750.1 PFAM: ferric iron reductase; KEGG: son:SO3034 ferric iron reductase protein, putative; ferric iron reductase 1816307 4659888 Sputw3181_1593 Shewanella sp. W3-18-1 ferric iron reductase YP_962984.1 1815183 R 351745 CDS YP_962985.1 120598411 4659953 complement(1816452..1818665) 1 NC_008750.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_1517 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1818665 4659953 Sputw3181_1594 Shewanella sp. W3-18-1 TonB-dependent siderophore receptor YP_962985.1 1816452 R 351745 CDS YP_962986.1 120598412 4659981 complement(1818762..1820690) 1 NC_008750.1 PFAM: IucA/IucC family protein; KEGG: she:Shewmr4_1452 IucA/IucC family protein; IucA/IucC family protein 1820690 4659981 Sputw3181_1595 Shewanella sp. W3-18-1 IucA/IucC family protein YP_962986.1 1818762 R 351745 CDS YP_962987.1 120598413 4660034 complement(1820691..1821380) 1 NC_008750.1 KEGG: son:SO3031 siderophore biosynthesis protein, putative; siderophore biosynthesis protein 1821380 4660034 Sputw3181_1596 Shewanella sp. W3-18-1 siderophore biosynthesis protein YP_962987.1 1820691 R 351745 CDS YP_962988.1 120598414 4660069 complement(1821380..1822897) 1 NC_008750.1 KEGG: shm:Shewmr7_1520 L-lysine 6-monooxygenase (NADPH); L-lysine 6-monooxygenase 1822897 4660069 Sputw3181_1597 Shewanella sp. W3-18-1 L-lysine 6-monooxygenase YP_962988.1 1821380 R 351745 CDS YP_962989.1 120598415 4660073 complement(1823584..1823868) 1 NC_008750.1 KEGG: son:SO3029 hypothetical protein; hypothetical protein 1823868 4660073 Sputw3181_1598 Shewanella sp. W3-18-1 hypothetical protein YP_962989.1 1823584 R 351745 CDS YP_962990.1 120598416 4660094 complement(1823940..1824371) 1 NC_008750.1 KEGG: she:Shewmr4_1456 hypothetical protein; hypothetical protein 1824371 4660094 Sputw3181_1599 Shewanella sp. W3-18-1 hypothetical protein YP_962990.1 1823940 R 351745 CDS YP_962991.1 120598417 4660150 complement(1824442..1825278) 1 NC_008750.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1825278 trpA 4660150 trpA Shewanella sp. W3-18-1 tryptophan synthase subunit alpha YP_962991.1 1824442 R 351745 CDS YP_962992.1 120598418 4661681 complement(1825284..1826474) 1 NC_008750.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1826474 4661681 Sputw3181_1601 Shewanella sp. W3-18-1 tryptophan synthase subunit beta YP_962992.1 1825284 R 351745 CDS YP_962993.1 120598419 4660427 complement(1826587..1828065) 1 NC_008750.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1828065 4660427 Sputw3181_1602 Shewanella sp. W3-18-1 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_962993.1 1826587 R 351745 CDS YP_962994.1 120598420 4660189 complement(1828072..1829118) 1 NC_008750.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1829118 trpD 4660189 trpD Shewanella sp. W3-18-1 anthranilate phosphoribosyltransferase YP_962994.1 1828072 R 351745 CDS YP_962995.1 120598421 4660498 complement(1829115..1829717) 1 NC_008750.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 1829717 4660498 Sputw3181_1604 Shewanella sp. W3-18-1 anthranilate synthase component II YP_962995.1 1829115 R 351745 CDS YP_962996.1 120598422 4660511 complement(1829727..1831358) 1 NC_008750.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1831358 4660511 Sputw3181_1605 Shewanella sp. W3-18-1 anthranilate synthase component I YP_962996.1 1829727 R 351745 CDS YP_962997.1 120598423 4660544 1831768..1832628 1 NC_008750.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: she:Shewmr4_1463 PHP C-terminal domain protein; phosphotransferase domain-containing protein 1832628 4660544 Sputw3181_1606 Shewanella sp. W3-18-1 phosphotransferase domain-containing protein YP_962997.1 1831768 D 351745 CDS YP_962998.1 120598424 4660567 1832625..1833245 1 NC_008750.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: son:SO3016 Sua5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 1833245 4660567 Sputw3181_1607 Shewanella sp. W3-18-1 Sua5/YciO/YrdC/YwlC family protein YP_962998.1 1832625 D 351745 CDS YP_962999.1 120598425 4660362 1833405..1834193 1 NC_008750.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: son:SO3015 putative segregation and condensation protein A; chromosome segregation and condensation protein ScpA 1834193 4660362 Sputw3181_1608 Shewanella sp. W3-18-1 chromosome segregation and condensation protein ScpA YP_962999.1 1833405 D 351745 CDS YP_963000.1 120598426 4660617 1834197..1834793 1 NC_008750.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: shm:Shewmr7_1532 putative transcriptional regulator; putative transcriptional regulator 1834793 4660617 Sputw3181_1609 Shewanella sp. W3-18-1 putative transcriptional regulator YP_963000.1 1834197 D 351745 CDS YP_963001.1 120598427 4660683 1834786..1835661 1 NC_008750.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shm:Shewmr7_1533 pseudouridine synthase, Rsu; pseudouridine synthase 1835661 4660683 Sputw3181_1610 Shewanella sp. W3-18-1 pseudouridine synthase YP_963001.1 1834786 D 351745 CDS YP_963002.1 120598428 4660726 1835762..1836736 1 NC_008750.1 KEGG: son:SO2936 hypothetical protein; hypothetical protein 1836736 4660726 Sputw3181_1611 Shewanella sp. W3-18-1 hypothetical protein YP_963002.1 1835762 D 351745 CDS YP_963003.1 120598429 4660739 complement(1836784..1837521) 1 NC_008750.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_1534 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 1837521 4660739 Sputw3181_1612 Shewanella sp. W3-18-1 short chain dehydrogenase YP_963003.1 1836784 R 351745 CDS YP_963004.1 120598430 4660772 1837783..1840257 1 NC_008750.1 KEGG: she:Shewmr4_1469 hypothetical protein; hypothetical protein 1840257 4660772 Sputw3181_1613 Shewanella sp. W3-18-1 hypothetical protein YP_963004.1 1837783 D 351745 CDS YP_963005.1 120598431 4660790 1840381..1841397 1 NC_008750.1 SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 1841397 4660790 Sputw3181_1614 Shewanella sp. W3-18-1 putative periplasmic protease YP_963005.1 1840381 D 351745 CDS YP_963006.1 120598432 4660803 complement(1841491..1842558) 1 NC_008750.1 KEGG: shm:Shewmr7_1542 hypothetical protein; hypothetical protein 1842558 4660803 Sputw3181_1615 Shewanella sp. W3-18-1 hypothetical protein YP_963006.1 1841491 R 351745 CDS YP_963007.1 120598433 4660847 complement(1842704..1843303) 1 NC_008750.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: she:Shewmr4_1478 arylesterase; arylesterase 1843303 4660847 Sputw3181_1616 Shewanella sp. W3-18-1 arylesterase YP_963007.1 1842704 R 351745 CDS YP_963008.1 120598434 4660417 1843356..1844111 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_1479 ABC transporter related; ABC transporter-like protein 1844111 4660417 Sputw3181_1617 Shewanella sp. W3-18-1 ABC transporter-like protein YP_963008.1 1843356 D 351745 CDS YP_963009.1 120598435 4660859 1844114..1846609 1 NC_008750.1 PFAM: protein of unknown function DUF214; KEGG: son:SO2926 ABC transporter, permease, putative; hypothetical protein 1846609 4660859 Sputw3181_1618 Shewanella sp. W3-18-1 hypothetical protein YP_963009.1 1844114 D 351745 CDS YP_963010.1 120598436 4660862 complement(1846667..1847890) 1 NC_008750.1 PFAM: sodium/glutamate symporter; KEGG: son:SO2923 sodium/glutamate symporter; sodium/glutamate symporter 1847890 4660862 Sputw3181_1619 Shewanella sp. W3-18-1 sodium/glutamate symporter YP_963010.1 1846667 R 351745 CDS YP_963011.1 120598437 4660869 complement(1848406..1849299) 1 NC_008750.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; domain of unknown function DUF1731; KEGG: shm:Shewmr7_1548 hypothetical protein; hypothetical protein 1849299 4660869 Sputw3181_1620 Shewanella sp. W3-18-1 hypothetical protein YP_963011.1 1848406 R 351745 CDS YP_963012.1 120598438 4660879 complement(1849394..1849765) 1 NC_008750.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 1849765 folX 4660879 folX Shewanella sp. W3-18-1 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase YP_963012.1 1849394 R 351745 CDS YP_963013.1 120598439 4660949 1849863..1850969 1 NC_008750.1 PFAM: protein of unknown function UPF0118; KEGG: shm:Shewmr7_1550 protein of unknown function UPF0118; hypothetical protein 1850969 4660949 Sputw3181_1622 Shewanella sp. W3-18-1 hypothetical protein YP_963013.1 1849863 D 351745 CDS YP_963014.1 120598440 4660960 1850977..1851891 1 NC_008750.1 KEGG: son:SO2919 hypothetical protein; hypothetical protein 1851891 4660960 Sputw3181_1623 Shewanella sp. W3-18-1 hypothetical protein YP_963014.1 1850977 D 351745 CDS YP_963015.1 120598441 4661403 1851997..1852200 1 NC_008750.1 KEGG: shm:Shewmr7_1553 hypothetical protein; hypothetical protein 1852200 4661403 Sputw3181_1624 Shewanella sp. W3-18-1 hypothetical protein YP_963015.1 1851997 D 351745 CDS YP_963016.1 120598442 4661283 complement(1852324..1852752) 1 NC_008750.1 KEGG: son:SO2917 hypothetical protein; hypothetical protein 1852752 4661283 Sputw3181_1625 Shewanella sp. W3-18-1 hypothetical protein YP_963016.1 1852324 R 351745 CDS YP_963017.1 120598443 4661141 1853256..1854866 1 NC_008750.1 KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 1854866 4661141 Sputw3181_1626 Shewanella sp. W3-18-1 IS4 family transposase YP_963017.1 1853256 D 351745 CDS YP_963018.1 120598444 4661189 complement(1855002..1857155) 1 NC_008750.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 1857155 4661189 Sputw3181_1627 Shewanella sp. W3-18-1 phosphate acetyltransferase YP_963018.1 1855002 R 351745 CDS YP_963019.1 120598445 4661165 complement(1857274..1858476) 1 NC_008750.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1858476 4661165 Sputw3181_1628 Shewanella sp. W3-18-1 acetate kinase YP_963019.1 1857274 R 351745 CDS YP_963020.1 120598446 4661144 1858563..1859060 1 NC_008750.1 PFAM: protein of unknown function DUF412; KEGG: son:SO2914 hypothetical protein; hypothetical protein 1859060 4661144 Sputw3181_1629 Shewanella sp. W3-18-1 hypothetical protein YP_963020.1 1858563 D 351745 CDS YP_963021.1 120598447 4661184 complement(1859105..1859845) 1 NC_008750.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 1859845 pflA 4661184 pflA Shewanella sp. W3-18-1 pyruvate formate lyase-activating enzyme 1 YP_963021.1 1859105 R 351745 CDS YP_963022.1 120598448 4661166 complement(1859909..1862191) 1 NC_008750.1 KEGG: son:SO2912 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; formate acetyltransferase 1862191 4661166 Sputw3181_1631 Shewanella sp. W3-18-1 formate acetyltransferase YP_963022.1 1859909 R 351745 CDS YP_963023.1 120598449 4661173 complement(1862836..1864368) 1 NC_008750.1 KEGG: sfr:Sfri_2472 hypothetical protein; hypothetical protein 1864368 4661173 Sputw3181_1632 Shewanella sp. W3-18-1 hypothetical protein YP_963023.1 1862836 R 351745 CDS YP_963024.1 120598450 4661160 1865285..1866898 1 NC_008750.1 PFAM: formate/nitrite transporter; CBS domain containing protein; KEGG: sfr:Sfri_2470 formate/nitrite transporter; formate/nitrite transporter 1866898 4661160 Sputw3181_1633 Shewanella sp. W3-18-1 formate/nitrite transporter YP_963024.1 1865285 D 351745 CDS YP_963025.1 120598451 4661133 complement(1866978..1867889) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_2469 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 1867889 4661133 Sputw3181_1634 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_963025.1 1866978 R 351745 CDS YP_963026.1 120598452 4661119 1868320..1869798 1 NC_008750.1 PFAM: C4-dicarboxylate anaerobic carrier; KEGG: shm:Shewmr7_1563 C4-dicarboxylate anaerobic carrier; hypothetical protein 1869798 4661119 Sputw3181_1635 Shewanella sp. W3-18-1 hypothetical protein YP_963026.1 1868320 D 351745 CDS YP_963027.1 120598453 4661090 complement(1869921..1872821) 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_2471 TonB-dependent receptor; TonB-dependent receptor 1872821 4661090 Sputw3181_1636 Shewanella sp. W3-18-1 TonB-dependent receptor YP_963027.1 1869921 R 351745 CDS YP_963028.1 120598454 4661096 complement(1873521..1874525) 1 NC_008750.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: son:SO2906 hypothetical protein; C4-dicarboxylate transporter/malic acid transport protein 1874525 4661096 Sputw3181_1637 Shewanella sp. W3-18-1 C4-dicarboxylate transporter/malic acid transport protein YP_963028.1 1873521 R 351745 CDS YP_963029.1 120598455 4661077 complement(1874657..1875736) 1 NC_008750.1 PFAM: O-methyltransferase, family 2; KEGG: shm:Shewmr7_1566 methyltransferase type 12; O-methyltransferase family protein 1875736 4661077 Sputw3181_1638 Shewanella sp. W3-18-1 O-methyltransferase family protein YP_963029.1 1874657 R 351745 CDS YP_963030.1 120598456 4661049 complement(1875935..1876903) 1 NC_008750.1 TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: son:SO2903 cysteine synthase A; cysteine synthase A 1876903 4661049 Sputw3181_1639 Shewanella sp. W3-18-1 cysteine synthase A YP_963030.1 1875935 R 351745 CDS YP_963031.1 120598457 4661063 1877155..1878351 1 NC_008750.1 PFAM: RDD domain containing protein; KEGG: she:Shewmr4_1501 RDD domain containing protein; RDD domain-containing protein 1878351 4661063 Sputw3181_1640 Shewanella sp. W3-18-1 RDD domain-containing protein YP_963031.1 1877155 D 351745 CDS YP_963032.1 120598458 4661067 1878348..1879469 1 NC_008750.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1879469 4661067 Sputw3181_1641 Shewanella sp. W3-18-1 3-oxoacyl-ACP synthase YP_963032.1 1878348 D 351745 CDS YP_963033.1 120598459 4661048 complement(1879564..1880343) 1 NC_008750.1 putative role in sulfur assimilation; putative sulfate transport protein CysZ 1880343 4661048 Sputw3181_1642 Shewanella sp. W3-18-1 putative sulfate transport protein CysZ YP_963033.1 1879564 R 351745 CDS YP_963034.1 120598460 4661045 1880541..1883978 1 NC_008750.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: son:SO2898 SMC family protein; chromosome segregation protein SMC 1883978 4661045 Sputw3181_1643 Shewanella sp. W3-18-1 chromosome segregation protein SMC YP_963034.1 1880541 D 351745 CDS YP_963035.1 120598461 4661874 1884002..1885030 1 NC_008750.1 TIGRFAM: cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; KEGG: she:Shewmr4_1507 cell division protein ZipA; cell division protein ZipA 1885030 4661874 Sputw3181_1644 Shewanella sp. W3-18-1 cell division protein ZipA YP_963035.1 1884002 D 351745 CDS YP_963036.1 120598462 4661872 1885107..1887164 1 NC_008750.1 KEGG: son:SO2896 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like; NAD-dependent DNA ligase 1887164 4661872 Sputw3181_1645 Shewanella sp. W3-18-1 NAD-dependent DNA ligase YP_963036.1 1885107 D 351745 CDS YP_963037.1 120598463 4661861 1887329..1887826 1 NC_008750.1 KEGG: son:SO2863 hypothetical protein; hypothetical protein 1887826 4661861 Sputw3181_1646 Shewanella sp. W3-18-1 hypothetical protein YP_963037.1 1887329 D 351745 CDS YP_963038.1 120598464 4661846 1888045..1889253 1 NC_008750.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: she:Shewmr4_1510 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1889253 4661846 Sputw3181_1647 Shewanella sp. W3-18-1 metal dependent phosphohydrolase YP_963038.1 1888045 D 351745 CDS YP_963039.1 120598465 4661843 1889310..1890170 1 NC_008750.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: shm:Shewmr7_1578 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1890170 4661843 Sputw3181_1648 Shewanella sp. W3-18-1 NAD-dependent epimerase/dehydratase YP_963039.1 1889310 D 351745 CDS YP_963040.1 120598466 4661845 1890284..1890907 1 NC_008750.1 PFAM: DSBA oxidoreductase; KEGG: son:SO2860 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase 1890907 4661845 Sputw3181_1649 Shewanella sp. W3-18-1 DSBA oxidoreductase YP_963040.1 1890284 D 351745 CDS YP_963041.1 120598467 4661833 1891523..1891789 1 NC_008750.1 KEGG: son:SO2858 hypothetical protein; hypothetical protein 1891789 4661833 Sputw3181_1650 Shewanella sp. W3-18-1 hypothetical protein YP_963041.1 1891523 D 351745 CDS YP_963042.1 120598468 4661825 1891801..1893537 1 NC_008750.1 PFAM: Na+/solute symporter; KEGG: shm:Shewmr7_1581 Na+/solute symporter; Na+/solute symporter 1893537 4661825 Sputw3181_1651 Shewanella sp. W3-18-1 Na+/solute symporter YP_963042.1 1891801 D 351745 CDS YP_963043.1 120598469 4661806 1893680..1895527 1 NC_008750.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: shm:Shewmr7_1582 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein 1895527 4661806 Sputw3181_1652 Shewanella sp. W3-18-1 cyclic nucleotide-binding protein YP_963043.1 1893680 D 351745 CDS YP_963044.1 120598470 4661814 1895543..1896214 1 NC_008750.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: she:Shewmr4_1516 exonuclease, RNase T and DNA polymerase III; exonuclease 1896214 4661814 Sputw3181_1653 Shewanella sp. W3-18-1 exonuclease YP_963044.1 1895543 D 351745 CDS YP_963045.1 120598471 4661770 complement(1896412..1897476) 1 NC_008750.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase 1897476 4661770 Sputw3181_1654 Shewanella sp. W3-18-1 3-oxoacyl-ACP synthase YP_963045.1 1896412 R 351745 CDS YP_963046.1 120598472 4661790 complement(1897569..1898270) 1 NC_008750.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: she:Shewmr4_1521 transcriptional regulator, GntR family; GntR family transcriptional regulator 1898270 4661790 Sputw3181_1655 Shewanella sp. W3-18-1 GntR family transcriptional regulator YP_963046.1 1897569 R 351745 CDS YP_963047.1 120598473 4661785 1898592..1899143 1 NC_008750.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 1899143 4661785 Sputw3181_1656 Shewanella sp. W3-18-1 D,D-heptose 1,7-bisphosphate phosphatase YP_963047.1 1898592 D 351745 CDS YP_963048.1 120598474 4660024 complement(1905614..1905874) 1 NC_008750.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 1905874 grxA 4660024 grxA Shewanella sp. W3-18-1 glutaredoxin YP_963048.1 1905614 R 351745 CDS YP_963049.1 120598475 4661753 complement(1905935..1907743) 1 NC_008750.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_2435 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit 1907743 4661753 Sputw3181_1658 Shewanella sp. W3-18-1 type III restriction enzyme, res subunit YP_963049.1 1905935 R 351745 CDS YP_963050.1 120598476 4661723 complement(1907891..1909843) 1 NC_008750.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 1909843 4661723 Sputw3181_1659 Shewanella sp. W3-18-1 acetyl-CoA synthetase YP_963050.1 1907891 R 351745 CDS YP_963051.1 120598477 4661739 1910019..1913456 1 NC_008750.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2742 sensor histidine kinase/response regulator; integral membrane sensor hybrid histidine kinase 1913456 4661739 Sputw3181_1660 Shewanella sp. W3-18-1 integral membrane sensor hybrid histidine kinase YP_963051.1 1910019 D 351745 CDS YP_963052.1 120598478 4661743 complement(1913512..1915113) 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: vch:VC1248 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1915113 4661743 Sputw3181_1661 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_963052.1 1913512 R 351745 CDS YP_963053.1 120598479 4661718 complement(1915346..1916686) 1 NC_008750.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: son:SO2741 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1916686 4661718 Sputw3181_1662 Shewanella sp. W3-18-1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_963053.1 1915346 R 351745 CDS YP_963054.1 120598480 4661696 1916810..1917862 1 NC_008750.1 KEGG: shm:Shewmr7_2431 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 1917862 4661696 Sputw3181_1663 Shewanella sp. W3-18-1 biotin synthase YP_963054.1 1916810 D 351745 CDS YP_963055.1 120598481 4661702 1917867..1919078 1 NC_008750.1 PFAM: aminotransferase, class I and II; aminotransferase class-III; KEGG: son:SO2739 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 1919078 4661702 Sputw3181_1664 Shewanella sp. W3-18-1 8-amino-7-oxononanoate synthase YP_963055.1 1917867 D 351745 CDS YP_963056.1 120598482 4661684 1919217..1920026 1 NC_008750.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_2357 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC 1920026 4661684 Sputw3181_1665 Shewanella sp. W3-18-1 biotin biosynthesis protein BioC YP_963056.1 1919217 D 351745 CDS YP_963057.1 120598483 4661687 1920066..1920809 1 NC_008750.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 1920809 bioD 4661687 bioD Shewanella sp. W3-18-1 dithiobiotin synthetase YP_963057.1 1920066 D 351745 CDS YP_963058.1 120598484 4661665 complement(1920909..1923203) 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: dar:Daro_4029 TonB-dependent receptor; TonB-dependent receptor 1923203 4661665 Sputw3181_1667 Shewanella sp. W3-18-1 TonB-dependent receptor YP_963058.1 1920909 R 351745 CDS YP_963059.1 120598485 4661682 complement(1923221..1927177) 1 NC_008750.1 PFAM: CobN/magnesium chelatase; KEGG: mma:MM1602 cobalamin biosynthesis protein CobN; cobaltochelatase 1927177 4661682 Sputw3181_1668 Shewanella sp. W3-18-1 cobaltochelatase YP_963059.1 1923221 R 351745 CDS YP_963060.1 120598486 4661653 complement(1927164..1927502) 1 NC_008750.1 KEGG: mbu:Mbur_2259 hypothetical protein; hypothetical protein 1927502 4661653 Sputw3181_1669 Shewanella sp. W3-18-1 hypothetical protein YP_963060.1 1927164 R 351745 CDS YP_963061.1 120598487 4661621 complement(1927499..1928113) 1 NC_008750.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: mac:MA4426 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 1928113 4661621 Sputw3181_1670 Shewanella sp. W3-18-1 MotA/TolQ/ExbB proton channel YP_963061.1 1927499 R 351745 CDS YP_963062.1 120598488 4661624 complement(1928449..1929417) 1 NC_008750.1 KEGG: shm:Shewmr7_2427 hypothetical protein; hypothetical protein 1929417 4661624 Sputw3181_1671 Shewanella sp. W3-18-1 hypothetical protein YP_963062.1 1928449 R 351745 CDS YP_963063.1 120598489 4661622 complement(1930031..1931620) 1 NC_008750.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1931620 mdoG 4661622 mdoG Shewanella sp. W3-18-1 glucan biosynthesis protein G YP_963063.1 1930031 R 351745 CDS YP_963064.1 120598490 4661579 complement(1931977..1932687) 1 NC_008750.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 1932687 4661579 Sputw3181_1673 Shewanella sp. W3-18-1 peptidase E YP_963064.1 1931977 R 351745 CDS YP_963065.1 120598491 4661609 1932977..1933840 1 NC_008750.1 putative metalloprotease; heat shock protein HtpX 1933840 4661609 Sputw3181_1674 Shewanella sp. W3-18-1 heat shock protein HtpX YP_963065.1 1932977 D 351745 CDS YP_963066.1 120598492 4661586 1934243..1934593 1 NC_008750.1 KEGG: shm:Shewmr7_2388 cytochrome c3; cytochrome c3 1934593 4661586 Sputw3181_1675 Shewanella sp. W3-18-1 cytochrome c3 YP_963066.1 1934243 D 351745 CDS YP_963067.1 120598493 4661577 1935331..1935966 1 NC_008750.1 PFAM: regulatory protein, LuxR; KEGG: shm:Shewmr7_2386 transcriptional regulator, LuxR family; response regulator receiver protein 1935966 4661577 Sputw3181_1676 Shewanella sp. W3-18-1 response regulator receiver protein YP_963067.1 1935331 D 351745 CDS YP_963068.1 120598494 4661599 1936130..1936507 1 NC_008750.1 KEGG: son:SO2890 hypothetical protein; hypothetical protein 1936507 4661599 Sputw3181_1677 Shewanella sp. W3-18-1 hypothetical protein YP_963068.1 1936130 D 351745 CDS YP_963069.1 120598495 4661592 complement(1936602..1937009) 1 NC_008750.1 PFAM: protein of unknown function DUF307; KEGG: son:SO1977 hypothetical protein; hypothetical protein 1937009 4661592 Sputw3181_1678 Shewanella sp. W3-18-1 hypothetical protein YP_963069.1 1936602 R 351745 CDS YP_963070.1 120598496 4661571 1937278..1938306 1 NC_008750.1 KEGG: son:SO1978 hypothetical protein; hypothetical protein 1938306 4661571 Sputw3181_1679 Shewanella sp. W3-18-1 hypothetical protein YP_963070.1 1937278 D 351745 CDS YP_963071.1 120598497 4661573 1938388..1939101 1 NC_008750.1 PFAM: NUDIX hydrolase; KEGG: son:SO1979 MutT/nudix family protein; NUDIX hydrolase 1939101 4661573 Sputw3181_1680 Shewanella sp. W3-18-1 NUDIX hydrolase YP_963071.1 1938388 D 351745 CDS YP_963072.1 120598498 4661564 1939460..1940347 1 NC_008750.1 KEGG: son:SO1980 phosphoribosyl transferase domain protein; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 1940347 4661564 Sputw3181_1681 Shewanella sp. W3-18-1 ribose-phosphate pyrophosphokinase YP_963072.1 1939460 D 351745 CDS YP_963073.1 120598499 4661555 1940358..1941830 1 NC_008750.1 PFAM: Nicotinate phosphoribosyltransferase and related; KEGG: son:SO1981 hypothetical protein; putative nicotinate phosphoribosyltransferase 1941830 4661555 Sputw3181_1682 Shewanella sp. W3-18-1 putative nicotinate phosphoribosyltransferase YP_963073.1 1940358 D 351745 CDS YP_963074.1 120598500 4661560 complement(1941988..1942248) 1 NC_008750.1 KEGG: shm:Shewmr7_2350 hypothetical protein; hypothetical protein 1942248 4661560 Sputw3181_1683 Shewanella sp. W3-18-1 hypothetical protein YP_963074.1 1941988 R 351745 CDS YP_963075.1 120598501 4661457 complement(1942549..1942731) 1 NC_008750.1 KEGG: shm:Shewmr7_2349 hypothetical protein; hypothetical protein 1942731 4661457 Sputw3181_1684 Shewanella sp. W3-18-1 hypothetical protein YP_963075.1 1942549 R 351745 CDS YP_963076.1 120598502 4661545 complement(1943345..1944052) 1 NC_008750.1 TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: she:Shewmr4_2276 anti-ECFsigma factor, ChrR; anti-ECF sigma factor ChrR 1944052 4661545 Sputw3181_1685 Shewanella sp. W3-18-1 anti-ECF sigma factor ChrR YP_963076.1 1943345 R 351745 CDS YP_963077.1 120598503 4661543 complement(1944045..1944707) 1 NC_008750.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO1986 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1944707 4661543 Sputw3181_1686 Shewanella sp. W3-18-1 ECF subfamily RNA polymerase sigma-24 factor YP_963077.1 1944045 R 351745 CDS YP_963078.1 120598504 4661535 complement(1944842..1945393) 1 NC_008750.1 PFAM: peptidase S16, lon domain protein; KEGG: shm:Shewmr7_2346 peptidase S16, lon domain protein; peptidase S16, lon domain-containing protein 1945393 4661535 Sputw3181_1687 Shewanella sp. W3-18-1 peptidase S16, lon domain-containing protein YP_963078.1 1944842 R 351745 CDS YP_963079.1 120598505 4661521 1945490..1946107 1 NC_008750.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO1988 hypothetical methyltransferase; type 11 methyltransferase 1946107 4661521 Sputw3181_1688 Shewanella sp. W3-18-1 type 11 methyltransferase YP_963079.1 1945490 D 351745 CDS YP_963080.1 120598506 4661530 1946371..1947315 1 NC_008750.1 PFAM: response regulator receiver; CheW domain protein; KEGG: she:Shewmr4_2272 response regulator receiver modulated CheW protein; putative CheW protein 1947315 4661530 Sputw3181_1689 Shewanella sp. W3-18-1 putative CheW protein YP_963080.1 1946371 D 351745 CDS YP_963081.1 120598507 4661496 complement(1947409..1948047) 1 NC_008750.1 KEGG: shm:Shewmr7_2343 hypothetical protein; hypothetical protein 1948047 4661496 Sputw3181_1690 Shewanella sp. W3-18-1 hypothetical protein YP_963081.1 1947409 R 351745 CDS YP_963082.1 120598508 4661507 complement(1948099..1948458) 1 NC_008750.1 KEGG: shm:Shewmr7_2342 hypothetical protein; hypothetical protein 1948458 4661507 Sputw3181_1691 Shewanella sp. W3-18-1 hypothetical protein YP_963082.1 1948099 R 351745 CDS YP_963083.1 120598509 4661508 1948665..1949984 1 NC_008750.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: she:Shewmr4_2269 lytic murein transglycosylase; lytic murein transglycosylase 1949984 4661508 Sputw3181_1692 Shewanella sp. W3-18-1 lytic murein transglycosylase YP_963083.1 1948665 D 351745 CDS YP_963084.1 120598510 4661482 1950091..1950582 1 NC_008750.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1995 peptidyl-prolyl cis-trans isomerase, FkbP family; peptidylprolyl isomerase, FKBP-type 1950582 4661482 Sputw3181_1693 Shewanella sp. W3-18-1 peptidylprolyl isomerase, FKBP-type YP_963084.1 1950091 D 351745 CDS YP_963085.1 120598511 4661434 complement(1950702..1952660) 1 NC_008750.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: shm:Shewmr7_2339 peptidase M1, membrane alanine aminopeptidase; peptidase M1, membrane alanine aminopeptidase 1952660 4661434 Sputw3181_1694 Shewanella sp. W3-18-1 peptidase M1, membrane alanine aminopeptidase YP_963085.1 1950702 R 351745 CDS YP_963086.1 120598512 4661477 1952912..1953139 1 NC_008750.1 KEGG: shm:Shewmr7_2338 hypothetical protein; hypothetical protein 1953139 4661477 Sputw3181_1695 Shewanella sp. W3-18-1 hypothetical protein YP_963086.1 1952912 D 351745 CDS YP_963087.1 120598513 4661449 1953228..1953899 1 NC_008750.1 PFAM: phospholipase/Carboxylesterase; KEGG: son:SO1999 phospholipase/carboxylesterase family protein; carboxylesterase 1953899 4661449 Sputw3181_1696 Shewanella sp. W3-18-1 carboxylesterase YP_963087.1 1953228 D 351745 CDS YP_963088.1 120598514 4661428 1954264..1955982 1 NC_008750.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 1955982 ushA 4661428 ushA Shewanella sp. W3-18-1 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic YP_963088.1 1954264 D 351745 CDS YP_963089.1 120598515 4661418 complement(1956215..1956574) 1 NC_008750.1 KEGG: shm:Shewmr7_2334 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 1956574 4661418 Sputw3181_1698 Shewanella sp. W3-18-1 TraR/DksA family transcriptional regulator YP_963089.1 1956215 R 351745 CDS YP_963090.1 120598516 4661396 complement(1956778..1957731) 1 NC_008750.1 PFAM: dihydrouridine synthase, DuS; KEGG: shm:Shewmr7_2333 dihydrouridine synthase, DuS; dihydrouridine synthase, DuS 1957731 4661396 Sputw3181_1699 Shewanella sp. W3-18-1 dihydrouridine synthase, DuS YP_963090.1 1956778 R 351745 CDS YP_963091.1 120598517 4661369 1957976..1958386 1 NC_008750.1 KEGG: shm:Shewmr7_2332 hypothetical protein; hypothetical protein 1958386 4661369 Sputw3181_1700 Shewanella sp. W3-18-1 hypothetical protein YP_963091.1 1957976 D 351745 CDS YP_963092.1 120598518 4661385 1958466..1959368 1 NC_008750.1 PFAM: protein of unknown function DUF692; KEGG: son:SO2008 hypothetical protein; hypothetical protein 1959368 4661385 Sputw3181_1701 Shewanella sp. W3-18-1 hypothetical protein YP_963092.1 1958466 D 351745 CDS YP_963093.1 120598519 4661357 1959368..1960114 1 NC_008750.1 KEGG: she:Shewmr4_2258 hypothetical protein; hypothetical protein 1960114 4661357 Sputw3181_1702 Shewanella sp. W3-18-1 hypothetical protein YP_963093.1 1959368 D 351745 CDS YP_963094.1 120598520 4661322 1960263..1960385 1 NC_008750.1 KEGG: shm:Shewmr7_2329 hypothetical protein; hypothetical protein 1960385 4661322 Sputw3181_1703 Shewanella sp. W3-18-1 hypothetical protein YP_963094.1 1960263 D 351745 CDS YP_963095.1 120598521 4661349 1960467..1960832 1 NC_008750.1 PFAM: protein of unknown function DUF454; KEGG: she:Shewmr4_2256 protein of unknown function DUF454; hypothetical protein 1960832 4661349 Sputw3181_1704 Shewanella sp. W3-18-1 hypothetical protein YP_963095.1 1960467 D 351745 CDS YP_963096.1 120598522 4661316 1961062..1961616 1 NC_008750.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1961616 4661316 Sputw3181_1705 Shewanella sp. W3-18-1 adenine phosphoribosyltransferase YP_963096.1 1961062 D 351745 CDS YP_963097.1 120598523 4661317 1961654..1964608 1 NC_008750.1 KEGG: son:SO2013 DNA polymerase III, gamma and tau subunits; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 1964608 4661317 Sputw3181_1706 Shewanella sp. W3-18-1 DNA polymerase III subunits gamma and tau YP_963097.1 1961654 D 351745 CDS YP_963098.1 120598524 4661172 1964778..1965107 1 NC_008750.1 PFAM: conserved hypothetical protein 103; KEGG: she:Shewmr4_2253 conserved hypothetical protein 103; hypothetical protein 1965107 4661172 Sputw3181_1707 Shewanella sp. W3-18-1 hypothetical protein YP_963098.1 1964778 D 351745 CDS YP_963099.1 120598525 4661319 1965120..1965719 1 NC_008750.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1965719 recR 4661319 recR Shewanella sp. W3-18-1 recombination protein RecR YP_963099.1 1965120 D 351745 CDS YP_963100.1 120598526 4661318 1966018..1967931 1 NC_008750.1 molecular chaperone; heat shock protein 90 1967931 4661318 Sputw3181_1709 Shewanella sp. W3-18-1 heat shock protein 90 YP_963100.1 1966018 D 351745 CDS YP_963101.1 120598527 4661305 1968176..1969039 1 NC_008750.1 PFAM: Thioredoxin domain; KEGG: she:Shewmr4_2250 thioredoxin domain; thioredoxin domain-containing protein 1969039 4661305 Sputw3181_1710 Shewanella sp. W3-18-1 thioredoxin domain-containing protein YP_963101.1 1968176 D 351745 CDS YP_963102.1 120598528 4661300 1969181..1969825 1 NC_008750.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1969825 adk 4661300 adk Shewanella sp. W3-18-1 adenylate kinase YP_963102.1 1969181 D 351745 CDS YP_963103.1 120598529 4661302 1969906..1970949 1 NC_008750.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1970949 hemH 4661302 hemH Shewanella sp. W3-18-1 ferrochelatase YP_963103.1 1969906 D 351745 CDS YP_963104.1 120598530 4661296 1971194..1972498 1 NC_008750.1 PFAM: PfkB domain protein; KEGG: son:SO2020 inosine-guanosine kinase; inosine kinase 1972498 4661296 Sputw3181_1713 Shewanella sp. W3-18-1 inosine kinase YP_963104.1 1971194 D 351745 CDS YP_963105.1 120598531 4661299 1972705..1973535 1 NC_008750.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1973535 nadE 4661299 nadE Shewanella sp. W3-18-1 NAD synthetase YP_963105.1 1972705 D 351745 CDS YP_963106.1 120598532 4661102 complement(1973775..1974269) 1 NC_008750.1 KEGG: shm:Shewmr7_2317 hypothetical protein; hypothetical protein 1974269 4661102 Sputw3181_1715 Shewanella sp. W3-18-1 hypothetical protein YP_963106.1 1973775 R 351745 CDS YP_963107.1 120598533 4660043 complement(1974858..1975724) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2297 transcriptional regulator, LysR family; LysR family transcriptional regulator 1975724 4660043 Sputw3181_1716 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_963107.1 1974858 R 351745 CDS YP_963108.1 120598534 4661158 1975837..1976943 1 NC_008750.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: shm:Shewmr7_2296 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1976943 4661158 Sputw3181_1717 Shewanella sp. W3-18-1 NADH:flavin oxidoreductase YP_963108.1 1975837 D 351745 CDS YP_963109.1 120598535 4661232 complement(1977028..1978806) 1 NC_008750.1 PFAM: sulfatase; KEGG: she:Shewmr4_2219 sulfatase; sulfatase 1978806 4661232 Sputw3181_1718 Shewanella sp. W3-18-1 sulfatase YP_963109.1 1977028 R 351745 CDS YP_963110.2 161936275 4661187 complement(1978870..1979088) 1 NC_008750.1 PFAM: protein of unknown function DUF1414; KEGG: shm:Shewmr7_2294 protein of unknown function DUF1414; hypothetical protein 1979088 4661187 Sputw3181_1719 Shewanella sp. W3-18-1 hypothetical protein YP_963110.2 1978870 R 351745 CDS YP_963111.1 120598537 4661258 1979166..1980194 1 NC_008750.1 PFAM: 37 kDa nucleoid-associated protein; KEGG: son:SO2177 hypothetical protein; nucleoid-associated protein NdpA 1980194 4661258 Sputw3181_1720 Shewanella sp. W3-18-1 nucleoid-associated protein NdpA YP_963111.1 1979166 D 351745 CDS YP_963112.1 120598538 4661253 complement(1980284..1981285) 1 NC_008750.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: son:SO2178 cytochrome c551 peroxidase; cytochrome-c peroxidase 1981285 4661253 Sputw3181_1721 Shewanella sp. W3-18-1 cytochrome-c peroxidase YP_963112.1 1980284 R 351745 CDS YP_963113.1 120598539 4661241 1981786..1982667 1 NC_008750.1 KEGG: shm:Shewmr7_2291 hypothetical protein; hypothetical protein 1982667 4661241 Sputw3181_1722 Shewanella sp. W3-18-1 hypothetical protein YP_963113.1 1981786 D 351745 CDS YP_963114.1 120598540 4661236 1982725..1983666 1 NC_008750.1 PFAM: peptidase M23B; KEGG: son:SO2180 peptidase, M23/M37 family; peptidase M23B 1983666 4661236 Sputw3181_1723 Shewanella sp. W3-18-1 peptidase M23B YP_963114.1 1982725 D 351745 CDS YP_963115.1 120598541 4661060 complement(1983774..1984034) 1 NC_008750.1 KEGG: shm:Shewmr7_2289 hypothetical protein; hypothetical protein 1984034 4661060 Sputw3181_1724 Shewanella sp. W3-18-1 hypothetical protein YP_963115.1 1983774 R 351745 CDS YP_963116.1 120598542 4661228 complement(1984112..1984777) 1 NC_008750.1 PFAM: protein of unknown function DUF991; KEGG: son:SO2182 hypothetical protein; hypothetical protein 1984777 4661228 Sputw3181_1725 Shewanella sp. W3-18-1 hypothetical protein YP_963116.1 1984112 R 351745 CDS YP_963117.1 120598543 4661240 complement(1984949..1985464) 1 NC_008750.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: shm:Shewmr7_2287 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1985464 4661240 Sputw3181_1726 Shewanella sp. W3-18-1 ErfK/YbiS/YcfS/YnhG family protein YP_963117.1 1984949 R 351745 CDS YP_963118.1 120598544 4661225 1985638..1986507 1 NC_008750.1 PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: she:Shewmr4_2209 ion transport protein; Ion transport protein 1986507 4661225 Sputw3181_1727 Shewanella sp. W3-18-1 Ion transport protein YP_963118.1 1985638 D 351745 CDS YP_963119.1 120598545 4661211 1986550..1988145 1 NC_008750.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: she:Shewmr4_1623 MATE efflux family protein; MATE efflux family protein 1988145 4661211 Sputw3181_1728 Shewanella sp. W3-18-1 MATE efflux family protein YP_963119.1 1986550 D 351745 CDS YP_963120.1 120598546 4661210 complement(1988240..1988437) 1 NC_008750.1 KEGG: son:SO1921 hypothetical protein; hypothetical protein 1988437 4661210 Sputw3181_1729 Shewanella sp. W3-18-1 hypothetical protein YP_963120.1 1988240 R 351745 CDS YP_963121.1 120598547 4661150 1988758..1989069 1 NC_008750.1 PFAM: uncharacterized conserved protein UCP029143; KEGG: she:Shewmr4_1625 uncharacterized conserved protein UCP029143; hypothetical protein 1989069 4661150 Sputw3181_1730 Shewanella sp. W3-18-1 hypothetical protein YP_963121.1 1988758 D 351745 CDS YP_963122.1 120598548 4660411 complement(1989150..1992197) 1 NC_008750.1 PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1627 acriflavin resistance protein; acriflavin resistance protein 1992197 4660411 Sputw3181_1731 Shewanella sp. W3-18-1 acriflavin resistance protein YP_963122.1 1989150 R 351745 CDS YP_963123.1 120598549 4660405 complement(1992194..1995445) 1 NC_008750.1 PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1628 acriflavin resistance protein; acriflavin resistance protein 1995445 4660405 Sputw3181_1732 Shewanella sp. W3-18-1 acriflavin resistance protein YP_963123.1 1992194 R 351745 CDS YP_963124.1 120598550 4660401 complement(1995459..1996523) 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1925 HlyD family secretion protein; RND family efflux transporter MFP subunit 1996523 4660401 Sputw3181_1733 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_963124.1 1995459 R 351745 CDS YP_963125.1 120598551 4660351 complement(1996845..1998131) 1 NC_008750.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 1998131 gltA 4660351 gltA Shewanella sp. W3-18-1 type II citrate synthase YP_963125.1 1996845 R 351745 CDS YP_963126.1 120598552 4659833 1998548..1998943 1 NC_008750.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: shm:Shewmr7_1706 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome subunit B 1998943 4659833 Sputw3181_1735 Shewanella sp. W3-18-1 succinate dehydrogenase, cytochrome subunit B YP_963126.1 1998548 D 351745 CDS YP_963127.1 120598553 4659820 1998937..1999284 1 NC_008750.1 KEGG: she:Shewmr4_1632 conserved hypothetical succinate dehydrogenase, hydrophobic subunit; putative succinate dehydrogenase, hydrophobic subunit 1999284 4659820 Sputw3181_1736 Shewanella sp. W3-18-1 putative succinate dehydrogenase, hydrophobic subunit YP_963127.1 1998937 D 351745 CDS YP_963128.1 120598554 4659799 1999285..2001051 1 NC_008750.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 2001051 sdhA 4659799 sdhA Shewanella sp. W3-18-1 succinate dehydrogenase flavoprotein subunit YP_963128.1 1999285 D 351745 CDS YP_963129.1 120598555 4661372 2001063..2001770 1 NC_008750.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 2001770 sdhB 4661372 sdhB Shewanella sp. W3-18-1 succinate dehydrogenase iron-sulfur subunit YP_963129.1 2001063 D 351745 CDS YP_963130.1 120598556 4659852 2001986..2004805 1 NC_008750.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2004805 sucA 4659852 sucA Shewanella sp. W3-18-1 2-oxoglutarate dehydrogenase E1 component YP_963130.1 2001986 D 351745 CDS YP_963131.1 120598557 4659135 2004837..2006039 1 NC_008750.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: she:Shewmr4_1636 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 2006039 4659135 Sputw3181_1740 Shewanella sp. W3-18-1 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase YP_963131.1 2004837 D 351745 CDS YP_963132.1 120598558 4661407 2006116..2007282 1 NC_008750.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2007282 sucC 4661407 sucC Shewanella sp. W3-18-1 succinyl-CoA synthetase subunit beta YP_963132.1 2006116 D 351745 CDS YP_963133.1 120598559 4659124 2007282..2008154 1 NC_008750.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: son:SO1933 succinyl-CoA synthetase alpha chain; succinyl-CoA synthetase subunit alpha 2008154 4659124 Sputw3181_1742 Shewanella sp. W3-18-1 succinyl-CoA synthetase subunit alpha YP_963133.1 2007282 D 351745 CDS YP_963134.1 120598560 4661549 2008556..2008963 1 NC_008750.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: shm:Shewmr7_1714 GreA/GreB family elongation factor; GreA/GreB family elongation factor 2008963 4661549 Sputw3181_1743 Shewanella sp. W3-18-1 GreA/GreB family elongation factor YP_963134.1 2008556 D 351745 CDS YP_963135.1 120598561 4659103 2009029..2009526 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1936 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2009526 4659103 Sputw3181_1744 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_963135.1 2009029 D 351745 CDS YP_963136.1 120598562 4659096 complement(2009622..2010053) 1 NC_008750.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 2010053 fur 4659096 fur Shewanella sp. W3-18-1 ferric uptake regulator YP_963136.1 2009622 R 351745 CDS YP_963137.1 120598563 4659094 2010310..2011044 1 NC_008750.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2011044 4659094 Sputw3181_1746 Shewanella sp. W3-18-1 NAD-dependent deacetylase YP_963137.1 2010310 D 351745 CDS YP_963138.1 120598564 4658604 2011041..2011490 1 NC_008750.1 KEGG: she:Shewmr4_1643 hypothetical protein; hypothetical protein 2011490 4658604 Sputw3181_1747 Shewanella sp. W3-18-1 hypothetical protein YP_963138.1 2011041 D 351745 CDS YP_963139.1 120598565 4658602 2011608..2012009 1 NC_008750.1 KEGG: son:SO1940 hypothetical protein; hypothetical protein 2012009 4658602 Sputw3181_1748 Shewanella sp. W3-18-1 hypothetical protein YP_963139.1 2011608 D 351745 CDS YP_963140.1 120598566 4660421 2012136..2013083 1 NC_008750.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: shm:Shewmr7_1720 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 2013083 4660421 Sputw3181_1749 Shewanella sp. W3-18-1 magnesium and cobalt transport protein CorA YP_963140.1 2012136 D 351745 CDS YP_963141.1 120598567 4657804 complement(2013143..2014405) 1 NC_008750.1 KEGG: son:SO1942 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 2014405 4657804 Sputw3181_1750 Shewanella sp. W3-18-1 metal dependent phosphohydrolase YP_963141.1 2013143 R 351745 CDS YP_963142.1 120598568 4657817 2014521..2015216 1 NC_008750.1 SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO1944 hypothetical protein; prolyl 4-hydroxylase subunit alpha 2015216 4657817 Sputw3181_1751 Shewanella sp. W3-18-1 prolyl 4-hydroxylase subunit alpha YP_963142.1 2014521 D 351745 CDS YP_963143.1 120598569 4657879 complement(2015233..2016582) 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1945 sensor protein PhoQ; integral membrane sensor signal transduction histidine kinase 2016582 4657879 Sputw3181_1752 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_963143.1 2015233 R 351745 CDS YP_963144.1 120598570 4657882 complement(2016573..2017247) 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_1655 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2017247 4657882 Sputw3181_1753 Shewanella sp. W3-18-1 two component transcriptional regulator YP_963144.1 2016573 R 351745 CDS YP_963145.1 120598571 4657916 complement(2017418..2017777) 1 NC_008750.1 KEGG: she:Shewmr4_1581 hypothetical protein; hypothetical protein 2017777 4657916 Sputw3181_1754 Shewanella sp. W3-18-1 hypothetical protein YP_963145.1 2017418 R 351745 CDS YP_963146.1 120598572 4657927 complement(2017945..2019270) 1 NC_008750.1 PFAM: sodium:dicarboxylate symporter; KEGG: she:Shewmr4_1582 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 2019270 4657927 Sputw3181_1755 Shewanella sp. W3-18-1 sodium:dicarboxylate symporter YP_963146.1 2017945 R 351745 CDS YP_963147.1 120598573 4657940 2019487..2022042 1 NC_008750.1 PFAM: Ig domain protein, group 1 domain protein; KEGG: sdn:Sden_2330 Ig-like, group 1; Ig domain-containing protein 2022042 4657940 Sputw3181_1756 Shewanella sp. W3-18-1 Ig domain-containing protein YP_963147.1 2019487 D 351745 CDS YP_963148.1 120598574 4657989 complement(2022104..2023438) 1 NC_008750.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 2023438 4657989 Sputw3181_1757 Shewanella sp. W3-18-1 succinylarginine dihydrolase YP_963148.1 2022104 R 351745 CDS YP_963149.1 120598575 4658003 2023767..2026409 1 NC_008750.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2026409 4658003 Sputw3181_1758 Shewanella sp. W3-18-1 DNA topoisomerase I YP_963149.1 2023767 D 351745 CDS YP_963150.1 120598576 4658008 complement(2026595..2027374) 1 NC_008750.1 KEGG: she:Shewmr4_1586 hypothetical protein; hypothetical protein 2027374 4658008 Sputw3181_1759 Shewanella sp. W3-18-1 hypothetical protein YP_963150.1 2026595 R 351745 CDS YP_963151.1 120598577 4658065 2027603..2028580 1 NC_008750.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 2028580 cysB 4658065 cysB Shewanella sp. W3-18-1 transcriptional regulator CysB YP_963151.1 2027603 D 351745 CDS YP_963152.1 120598578 4658095 complement(2028663..2029325) 1 NC_008750.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: she:Shewmr4_1588 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2029325 4658095 Sputw3181_1761 Shewanella sp. W3-18-1 two component LuxR family transcriptional regulator YP_963152.1 2028663 R 351745 CDS YP_963153.1 120598579 4658100 complement(2029547..2029978) 1 NC_008750.1 PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_1664 thioesterase superfamily protein; thioesterase superfamily protein 2029978 4658100 Sputw3181_1762 Shewanella sp. W3-18-1 thioesterase superfamily protein YP_963153.1 2029547 R 351745 CDS YP_963154.1 120598580 4658109 complement(2030133..2031206) 1 NC_008750.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 2031206 4658109 Sputw3181_1763 Shewanella sp. W3-18-1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_963154.1 2030133 R 351745 CDS YP_963155.1 120598581 4658110 complement(2031389..2032201) 1 NC_008750.1 PFAM: protein of unknown function DUF299; KEGG: shm:Shewmr7_1666 protein of unknown function DUF299; hypothetical protein 2032201 4658110 Sputw3181_1764 Shewanella sp. W3-18-1 hypothetical protein YP_963155.1 2031389 R 351745 CDS YP_963156.1 120598582 4658119 2032326..2034695 1 NC_008750.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2034695 4658119 Sputw3181_1765 Shewanella sp. W3-18-1 phosphoenolpyruvate synthase YP_963156.1 2032326 D 351745 CDS YP_963157.1 120598583 4658166 2034793..2037834 1 NC_008750.1 PFAM: FAD linked oxidase domain protein; KEGG: she:Shewmr4_1593 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 2037834 4658166 Sputw3181_1766 Shewanella sp. W3-18-1 FAD linked oxidase domain-containing protein YP_963157.1 2034793 D 351745 CDS YP_963158.1 120598584 4658181 2038033..2039406 1 NC_008750.1 PFAM: transposase Tn5, dimerisation domain protein; KEGG: ppr:PBPRB0910 hypothetical transposase; transposase Tn5 dimerisation subunit 2039406 4658181 Sputw3181_1767 Shewanella sp. W3-18-1 transposase Tn5 dimerisation subunit YP_963158.1 2038033 D 351745 CDS YP_963159.1 120598585 4658198 2039456..2039929 1 NC_008750.1 PFAM: protein of unknown function DUF1285; KEGG: son:SO2642 hypothetical protein; hypothetical protein 2039929 4658198 Sputw3181_1768 Shewanella sp. W3-18-1 hypothetical protein YP_963159.1 2039456 D 351745 CDS YP_963160.1 120598586 4657741 2040017..2040490 1 NC_008750.1 PFAM: regulatory protein, MarR; KEGG: son:SO2640 transcriptional regulator, MarR family; MarR family transcriptional regulator 2040490 4657741 Sputw3181_1769 Shewanella sp. W3-18-1 MarR family transcriptional regulator YP_963160.1 2040017 D 351745 CDS YP_963161.1 120598587 4658216 complement(2040627..2040971) 1 NC_008750.1 KEGG: shm:Shewmr7_1672 hypothetical protein; hypothetical protein 2040971 4658216 Sputw3181_1770 Shewanella sp. W3-18-1 hypothetical protein YP_963161.1 2040627 R 351745 CDS YP_963162.1 120598588 4658224 complement(2041163..2042197) 1 NC_008750.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: she:Shewmr4_1598 Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Glu/Leu/Phe/Val dehydrogenase 2042197 4658224 Sputw3181_1771 Shewanella sp. W3-18-1 Glu/Leu/Phe/Val dehydrogenase YP_963162.1 2041163 R 351745 CDS YP_963163.1 120598589 4658235 2042478..2042927 1 NC_008750.1 KEGG: son:SO2637 hypothetical protein; hypothetical protein 2042927 4658235 Sputw3181_1772 Shewanella sp. W3-18-1 hypothetical protein YP_963163.1 2042478 D 351745 CDS YP_963164.1 120598590 4657747 complement(2043106..2044245) 1 NC_008750.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: she:Shewmr4_1600 cupin 4 family protein; cupin 4 family protein 2044245 4657747 Sputw3181_1773 Shewanella sp. W3-18-1 cupin 4 family protein YP_963164.1 2043106 R 351745 CDS YP_963165.1 120598591 4658270 complement(2044398..2045768) 1 NC_008750.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2045768 4658270 Sputw3181_1774 Shewanella sp. W3-18-1 adenylosuccinate lyase YP_963165.1 2044398 R 351745 CDS YP_963166.1 120598592 4658275 complement(2045798..2046415) 1 NC_008750.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2046415 4658275 Sputw3181_1775 Shewanella sp. W3-18-1 hypothetical protein YP_963166.1 2045798 R 351745 CDS YP_963167.1 120598593 4658292 complement(2046419..2047537) 1 NC_008750.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2047537 mnmA 4658292 mnmA Shewanella sp. W3-18-1 tRNA-specific 2-thiouridylase MnmA YP_963167.1 2046419 R 351745 CDS YP_963168.1 120598594 4657756 complement(2047750..2048244) 1 NC_008750.1 PFAM: NUDIX hydrolase; KEGG: son:SO2631 MutT/nudix family protein; NUDIX hydrolase 2048244 4657756 Sputw3181_1777 Shewanella sp. W3-18-1 NUDIX hydrolase YP_963168.1 2047750 R 351745 CDS YP_963169.1 120598595 4658309 complement(2048312..2049124) 1 NC_008750.1 PFAM: pseudouridine synthase; KEGG: she:Shewmr4_1605 pseudouridine synthase, Rsu; pseudouridylate synthase 2049124 4658309 Sputw3181_1778 Shewanella sp. W3-18-1 pseudouridylate synthase YP_963169.1 2048312 R 351745 CDS YP_963170.1 120598596 4658313 2049441..2051666 1 NC_008750.1 KEGG: shm:Shewmr7_1681 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase 2051666 4658313 Sputw3181_1779 Shewanella sp. W3-18-1 isocitrate dehydrogenase YP_963170.1 2049441 D 351745 CDS YP_963171.1 120598597 4660284 2052387..2052695 1 NC_008750.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2052695 clpS 4660284 clpS Shewanella sp. W3-18-1 ATP-dependent Clp protease adaptor protein ClpS YP_963171.1 2052387 D 351745 CDS YP_963172.1 120598598 4658426 2052739..2055006 1 NC_008750.1 KEGG: son:SO2626 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2055006 4658426 Sputw3181_1782 Shewanella sp. W3-18-1 ATP-dependent Clp protease ATP-binding protein ClpA YP_963172.1 2052739 D 351745 CDS YP_963173.1 120598599 4657775 complement(2055122..2055340) 1 NC_008750.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2055340 infA 4657775 infA Shewanella sp. W3-18-1 translation initiation factor IF-1 YP_963173.1 2055122 R 351745 CDS YP_963174.1 120598600 4658368 complement(2055432..2056166) 1 NC_008750.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2056166 4658368 Sputw3181_1784 Shewanella sp. W3-18-1 arginyl-tRNA-protein transferase YP_963174.1 2055432 R 351745 CDS YP_963175.1 120598601 4661293 complement(2056129..2056839) 1 NC_008750.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2056839 aat 4661293 aat Shewanella sp. W3-18-1 leucyl/phenylalanyl-tRNA--protein transferase YP_963175.1 2056129 R 351745 CDS YP_963176.1 120598602 4661269 2056894..2057364 1 NC_008750.1 PFAM: 17 kDa surface antigen; KEGG: she:Shewmr4_1652 17 kDa surface antigen; 17 kDa surface antigen 2057364 4661269 Sputw3181_1786 Shewanella sp. W3-18-1 17 kDa surface antigen YP_963176.1 2056894 D 351745 CDS YP_963177.1 120598603 4658465 2057408..2058160 1 NC_008750.1 PFAM: protein of unknown function DUF34; KEGG: son:SO2621 conserved hypothetical protein TIGR00486; hypothetical protein 2058160 4658465 Sputw3181_1787 Shewanella sp. W3-18-1 hypothetical protein YP_963177.1 2057408 D 351745 CDS YP_963178.1 120598604 4658535 complement(2058222..2059178) 1 NC_008750.1 PFAM: Auxin Efflux Carrier; KEGG: she:Shewmr4_1654 auxin efflux carrier; auxin efflux carrier 2059178 4658535 Sputw3181_1788 Shewanella sp. W3-18-1 auxin efflux carrier YP_963178.1 2058222 R 351745 CDS YP_963179.1 120598605 4658544 complement(2059268..2061337) 1 NC_008750.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2061337 metG 4658544 metG Shewanella sp. W3-18-1 methionyl-tRNA synthetase YP_963179.1 2059268 R 351745 CDS YP_963180.1 120598606 4659030 2061492..2062613 1 NC_008750.1 KEGG: son:SO2618 ATP-binding protein, Mrp/Nbp35 family; ATP-binding Mrp/Nbp35 family protein 2062613 4659030 Sputw3181_1790 Shewanella sp. W3-18-1 ATP-binding Mrp/Nbp35 family protein YP_963180.1 2061492 D 351745 CDS YP_963181.1 120598607 4658631 2062625..2063263 1 NC_008750.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2063263 4658631 Sputw3181_1791 Shewanella sp. W3-18-1 uridine kinase YP_963181.1 2062625 D 351745 CDS YP_963182.1 120598608 4658668 2063295..2063876 1 NC_008750.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2063876 dcd 4658668 dcd Shewanella sp. W3-18-1 deoxycytidine triphosphate deaminase YP_963182.1 2063295 D 351745 CDS YP_963183.1 120598609 4658674 2063882..2064691 1 NC_008750.1 PFAM: aminotransferase, class IV; KEGG: son:SO2615 4-amino-4-deoxychorismate lyase; aminotransferase, class IV 2064691 4658674 Sputw3181_1793 Shewanella sp. W3-18-1 aminotransferase, class IV YP_963183.1 2063882 D 351745 CDS YP_963184.1 120598610 4658676 2064688..2065725 1 NC_008750.1 PFAM: aminodeoxychorismate lyase; KEGG: shm:Shewmr7_1735 aminodeoxychorismate lyase; aminodeoxychorismate lyase 2065725 4658676 Sputw3181_1794 Shewanella sp. W3-18-1 aminodeoxychorismate lyase YP_963184.1 2064688 D 351745 CDS YP_963185.1 120598611 4658449 2065748..2066374 1 NC_008750.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2066374 tmk 4658449 tmk Shewanella sp. W3-18-1 thymidylate kinase YP_963185.1 2065748 D 351745 CDS YP_963186.1 120598612 4658687 2066368..2067324 1 NC_008750.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: she:Shewmr4_1662 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' 2067324 4658687 Sputw3181_1796 Shewanella sp. W3-18-1 DNA polymerase III subunit delta' YP_963186.1 2066368 D 351745 CDS YP_963187.1 120598613 4658447 2067331..2067657 1 NC_008750.1 KEGG: shm:Shewmr7_1738 type IV pilus biogenesis protein PilZ; type IV pilus biogenesis protein PilZ 2067657 4658447 Sputw3181_1797 Shewanella sp. W3-18-1 type IV pilus biogenesis protein PilZ YP_963187.1 2067331 D 351745 CDS YP_963188.1 120598614 4658437 2067703..2068545 1 NC_008750.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: shm:Shewmr7_1739 hydrolase, TatD family; TatD family hydrolase 2068545 4658437 Sputw3181_1798 Shewanella sp. W3-18-1 TatD family hydrolase YP_963188.1 2067703 D 351745 CDS YP_963189.1 120598615 4658436 complement(2068852..2070369) 1 NC_008750.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2070369 yebU 4658436 yebU Shewanella sp. W3-18-1 rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_963189.1 2068852 R 351745 CDS YP_963190.1 120598616 4658417 2070534..2071760 1 NC_008750.1 PFAM: nucleoside recognition domain protein; KEGG: she:Shewmr4_1666 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 2071760 4658417 Sputw3181_1800 Shewanella sp. W3-18-1 nucleoside recognition domain-containing protein YP_963190.1 2070534 D 351745 CDS YP_963191.1 120598617 4658424 complement(2071857..2074502) 1 NC_008750.1 PFAM: Mammalian cell entry related domain protein; KEGG: she:Shewmr4_1667 mammalian cell entry related domain protein; hypothetical protein 2074502 4658424 Sputw3181_1801 Shewanella sp. W3-18-1 hypothetical protein YP_963191.1 2071857 R 351745 CDS YP_963192.1 120598618 4658420 complement(2074489..2075121) 1 NC_008750.1 PFAM: Paraquat-inducible protein A; KEGG: shm:Shewmr7_1743 paraquat-inducible protein A; paraquat-inducible protein A 2075121 4658420 Sputw3181_1802 Shewanella sp. W3-18-1 paraquat-inducible protein A YP_963192.1 2074489 R 351745 CDS YP_963193.1 120598619 4658708 complement(2075108..2075740) 1 NC_008750.1 PFAM: Paraquat-inducible protein A; KEGG: she:Shewmr4_1669 paraquat-inducible protein A; paraquat-inducible protein A 2075740 4658708 Sputw3181_1803 Shewanella sp. W3-18-1 paraquat-inducible protein A YP_963193.1 2075108 R 351745 CDS YP_963194.1 120598620 4658712 2075948..2076247 1 NC_008750.1 PFAM: YebG family protein; KEGG: shm:Shewmr7_1745 YebG family protein; hypothetical protein 2076247 4658712 Sputw3181_1804 Shewanella sp. W3-18-1 hypothetical protein YP_963194.1 2075948 D 351745 CDS YP_963195.1 120598621 4658713 2076266..2076724 1 NC_008750.1 PFAM: GAF domain protein; KEGG: shm:Shewmr7_1746 putative GAF sensor protein; putative GAF sensor protein 2076724 4658713 Sputw3181_1805 Shewanella sp. W3-18-1 putative GAF sensor protein YP_963195.1 2076266 D 351745 CDS YP_963196.1 120598622 4658394 2077004..2077645 1 NC_008750.1 affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 2077645 4658394 Sputw3181_1806 Shewanella sp. W3-18-1 putative solute/DNA competence effector YP_963196.1 2077004 D 351745 CDS YP_963197.1 120598623 4658377 2077674..2079719 1 NC_008750.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 2079719 4658377 Sputw3181_1807 Shewanella sp. W3-18-1 carboxy-terminal protease YP_963197.1 2077674 D 351745 CDS YP_963198.1 120598624 4658719 2079802..2082351 1 NC_008750.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: she:Shewmr4_1674 aminopeptidase N; aminopeptidase N 2082351 pepN 4658719 pepN Shewanella sp. W3-18-1 aminopeptidase N YP_963198.1 2079802 D 351745 CDS YP_963199.1 120598625 4658378 2082379..2082612 1 NC_008750.1 KEGG: son:SO2598 hypothetical protein; hypothetical protein 2082612 4658378 Sputw3181_1809 Shewanella sp. W3-18-1 hypothetical protein YP_963199.1 2082379 D 351745 CDS YP_963200.1 120598626 4658348 2082951..2084993 1 NC_008750.1 PFAM: protein of unknown function DUF1302; KEGG: son:SO2597 hypothetical protein; hypothetical protein 2084993 4658348 Sputw3181_1810 Shewanella sp. W3-18-1 hypothetical protein YP_963200.1 2082951 D 351745 CDS YP_963201.1 120598627 4658361 2085007..2086371 1 NC_008750.1 PFAM: protein of unknown function DUF1329; KEGG: she:Shewmr4_1677 protein of unknown function DUF1329; hypothetical protein 2086371 4658361 Sputw3181_1811 Shewanella sp. W3-18-1 hypothetical protein YP_963201.1 2085007 D 351745 CDS YP_963202.1 120598628 4658336 2086425..2087438 1 NC_008750.1 KEGG: son:SO2595 BNR repeat protein; BNR repeat-containing protein 2087438 4658336 Sputw3181_1812 Shewanella sp. W3-18-1 BNR repeat-containing protein YP_963202.1 2086425 D 351745 CDS YP_963203.1 120598629 4658751 2087471..2089786 1 NC_008750.1 KEGG: shm:Shewmr7_1754 hypothetical protein; hypothetical protein 2089786 4658751 Sputw3181_1813 Shewanella sp. W3-18-1 hypothetical protein YP_963203.1 2087471 D 351745 CDS YP_963204.1 120598630 4658784 2090049..2094893 1 NC_008750.1 PFAM: NAD-glutamate dehydrogenase; KEGG: shm:Shewmr7_1755 NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase 2094893 4658784 Sputw3181_1814 Shewanella sp. W3-18-1 NAD-glutamate dehydrogenase YP_963204.1 2090049 D 351745 CDS YP_963205.1 120598631 4658805 2094956..2095975 1 NC_008750.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2095975 4658805 Sputw3181_1815 Shewanella sp. W3-18-1 dihydroorotate dehydrogenase 2 YP_963205.1 2094956 D 351745 CDS YP_963206.1 120598632 4658824 2096176..2096709 1 NC_008750.1 PFAM: protein of unknown function DUF1379; KEGG: she:Shewmr4_1682 protein of unknown function DUF1379; hypothetical protein 2096709 4658824 Sputw3181_1816 Shewanella sp. W3-18-1 hypothetical protein YP_963206.1 2096176 D 351745 CDS YP_963207.1 120598633 4658839 complement(2096771..2096863) 1 NC_008750.1 KEGG: vpa:VP1842 RelB protein; RelB protein 2096863 4658839 Sputw3181_1817 Shewanella sp. W3-18-1 RelB protein YP_963207.1 2096771 R 351745 CDS YP_963208.1 120598634 4658846 2097047..2097376 1 NC_008750.1 hypothetical protein 2097376 4658846 Sputw3181_1818 Shewanella sp. W3-18-1 hypothetical protein YP_963208.1 2097047 D 351745 CDS YP_963209.1 120598635 4658892 2097449..2097961 1 NC_008750.1 hypothetical protein 2097961 4658892 Sputw3181_1819 Shewanella sp. W3-18-1 hypothetical protein YP_963209.1 2097449 D 351745 CDS YP_963210.1 120598636 4658897 complement(2098277..2098642) 1 NC_008750.1 PFAM: uncharacterized conserved protein UCP025560; KEGG: shm:Shewmr7_2188 uncharacterized conserved protein UCP025560; hypothetical protein 2098642 4658897 Sputw3181_1820 Shewanella sp. W3-18-1 hypothetical protein YP_963210.1 2098277 R 351745 CDS YP_963211.1 120598637 4658903 complement(2098668..2098886) 1 NC_008750.1 KEGG: son:SO2063 hypothetical protein; hypothetical protein 2098886 4658903 Sputw3181_1821 Shewanella sp. W3-18-1 hypothetical protein YP_963211.1 2098668 R 351745 CDS YP_963212.1 120598638 4658907 complement(2098900..2102112) 1 NC_008750.1 KEGG: she:Shewmr4_1791 hypothetical protein; hypothetical protein 2102112 4658907 Sputw3181_1822 Shewanella sp. W3-18-1 hypothetical protein YP_963212.1 2098900 R 351745 CDS YP_963213.1 120598639 4658914 complement(2102403..2103590) 1 NC_008750.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: she:Shewmr4_1792 aromatic amino acid transporter; aromatic amino acid transporter 2103590 4658914 Sputw3181_1823 Shewanella sp. W3-18-1 aromatic amino acid transporter YP_963213.1 2102403 R 351745 CDS YP_963214.1 120598640 4658930 complement(2104108..2104749) 1 NC_008750.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2104749 4658930 Sputw3181_1824 Shewanella sp. W3-18-1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_963214.1 2104108 R 351745 CDS YP_963215.1 120598641 4658939 complement(2104839..2105612) 1 NC_008750.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2105612 4658939 Sputw3181_1825 Shewanella sp. W3-18-1 imidazole glycerol phosphate synthase subunit HisF YP_963215.1 2104839 R 351745 CDS YP_963216.1 120598642 4658953 complement(2105594..2106331) 1 NC_008750.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2106331 4658953 Sputw3181_1826 Shewanella sp. W3-18-1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_963216.1 2105594 R 351745 CDS YP_963217.1 120598643 4658983 complement(2106402..2107214) 1 NC_008750.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2107214 hisH 4658983 hisH Shewanella sp. W3-18-1 imidazole glycerol phosphate synthase subunit HisH YP_963217.1 2106402 R 351745 CDS YP_963218.1 120598644 4657760 complement(2107246..2108337) 1 NC_008750.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2108337 4657760 Sputw3181_1828 Shewanella sp. W3-18-1 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_963218.1 2107246 R 351745 CDS YP_963219.1 120598645 4659034 complement(2108367..2109530) 1 NC_008750.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2109530 4659034 Sputw3181_1829 Shewanella sp. W3-18-1 histidinol-phosphate aminotransferase YP_963219.1 2108367 R 351745 CDS YP_963220.1 120598646 4659596 complement(2109591..2110913) 1 NC_008750.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2110913 hisD 4659596 hisD Shewanella sp. W3-18-1 histidinol dehydrogenase YP_963220.1 2109591 R 351745 CDS YP_963221.1 120598647 4659669 complement(2110917..2111912) 1 NC_008750.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2111912 hisG 4659669 hisG Shewanella sp. W3-18-1 ATP phosphoribosyltransferase YP_963221.1 2110917 R 351745 CDS YP_963222.1 120598648 4659043 complement(2112319..2112966) 1 NC_008750.1 PFAM: protein of unknown function DUF938; KEGG: son:SO2050 hypothetical protein; hypothetical protein 2112966 4659043 Sputw3181_1832 Shewanella sp. W3-18-1 hypothetical protein YP_963222.1 2112319 R 351745 CDS YP_963223.1 120598649 4659036 2113472..2114761 1 NC_008750.1 PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_2193 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2114761 4659036 Sputw3181_1833 Shewanella sp. W3-18-1 FAD dependent oxidoreductase YP_963223.1 2113472 D 351745 CDS YP_963224.1 120598650 4659016 complement(2114814..2115692) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2192 transcriptional regulator, LysR family; LysR family transcriptional regulator 2115692 4659016 Sputw3181_1834 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_963224.1 2114814 R 351745 CDS YP_963225.1 120598651 4659025 2115868..2117007 1 NC_008750.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: shm:Shewmr7_2191 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 2117007 4659025 Sputw3181_1835 Shewanella sp. W3-18-1 alcohol dehydrogenase YP_963225.1 2115868 D 351745 CDS YP_963226.1 120598652 4659020 2117173..2118015 1 NC_008750.1 PFAM: putative esterase; KEGG: shm:Shewmr7_2190 carboxylesterase; carboxylesterase 2118015 4659020 Sputw3181_1836 Shewanella sp. W3-18-1 carboxylesterase YP_963226.1 2117173 D 351745 CDS YP_963227.1 120598653 4659196 complement(2118134..2119510) 1 NC_008750.1 KEGG: shm:Shewmr7_1804 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 2119510 4659196 Sputw3181_1837 Shewanella sp. W3-18-1 L-serine dehydratase 1 YP_963227.1 2118134 R 351745 CDS YP_963228.1 120598654 4660268 2119900..2120928 1 NC_008750.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 2120928 4660268 Sputw3181_1839 Shewanella sp. W3-18-1 beta-hexosaminidase YP_963228.1 2119900 D 351745 CDS YP_963229.1 120598655 4659199 2120986..2121543 1 NC_008750.1 PFAM: protein of unknown function UPF0227; KEGG: son:SO2251 conserved hypothetical protein; hypothetical protein 2121543 4659199 Sputw3181_1840 Shewanella sp. W3-18-1 hypothetical protein YP_963229.1 2120986 D 351745 CDS YP_963230.1 120598656 4659000 complement(2122176..2122724) 1 NC_008750.1 PFAM: protein of unknown function UPF0167; KEGG: son:SO0898 hypothetical protein; hypothetical protein 2122724 4659000 Sputw3181_1841 Shewanella sp. W3-18-1 hypothetical protein YP_963230.1 2122176 R 351745 CDS YP_963231.1 120598657 4658985 complement(2122819..2123256) 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_0928 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2123256 4658985 Sputw3181_1842 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_963231.1 2122819 R 351745 CDS YP_963232.1 120598658 4658982 complement(2123403..2123669) 1 NC_008750.1 KEGG: atc:AGR_L_16 hypothetical protein; hypothetical protein 2123669 4658982 Sputw3181_1843 Shewanella sp. W3-18-1 hypothetical protein YP_963232.1 2123403 R 351745 CDS YP_963233.1 120598659 4658978 complement(2123674..2123889) 1 NC_008750.1 KEGG: atc:AGR_L_17 hypothetical protein; hypothetical protein 2123889 4658978 Sputw3181_1844 Shewanella sp. W3-18-1 hypothetical protein YP_963233.1 2123674 R 351745 CDS YP_963234.1 120598660 4658593 complement(2124313..2125431) 1 NC_008750.1 PFAM: putative transposase; KEGG: son:SO2212 transposase, IS91 family, putative; putative transposase 2125431 4658593 Sputw3181_1845 Shewanella sp. W3-18-1 putative transposase YP_963234.1 2124313 R 351745 CDS YP_963235.1 120598661 4658964 complement(2125410..2126273) 1 NC_008750.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO2036 site-specific recombinase, phage integrase family; phage integrase family protein 2126273 4658964 Sputw3181_1846 Shewanella sp. W3-18-1 phage integrase family protein YP_963235.1 2125410 R 351745 CDS YP_963236.1 120598662 4658597 2126728..2126901 1 NC_008750.1 KEGG: she:Shewmr4_1443 hypothetical protein; hypothetical protein 2126901 4658597 Sputw3181_1847 Shewanella sp. W3-18-1 hypothetical protein YP_963236.1 2126728 D 351745 CDS YP_963237.1 120598663 4658963 2127190..2129466 1 NC_008750.1 KEGG: son:SO1424 hypothetical protein; hypothetical protein 2129466 4658963 Sputw3181_1848 Shewanella sp. W3-18-1 hypothetical protein YP_963237.1 2127190 D 351745 CDS YP_963238.1 120598664 4658960 2129476..2131176 1 NC_008750.1 KEGG: son:SO1425 hypothetical protein; hypothetical protein 2131176 4658960 Sputw3181_1849 Shewanella sp. W3-18-1 hypothetical protein YP_963238.1 2129476 D 351745 CDS YP_963239.1 120598665 4659216 2131337..2132710 1 NC_008750.1 PFAM: transposase Tn5, dimerisation domain protein; KEGG: ppr:PBPRB0910 hypothetical transposase; transposase Tn5 dimerisation subunit 2132710 4659216 Sputw3181_1850 Shewanella sp. W3-18-1 transposase Tn5 dimerisation subunit YP_963239.1 2131337 D 351745 CDS YP_963240.1 120598666 4658596 2133311..2133586 1 NC_008750.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 2133586 4658596 Sputw3181_1851 Shewanella sp. W3-18-1 acylphosphatase YP_963240.1 2133311 D 351745 CDS YP_963241.1 120598667 4659234 complement(2133672..2134682) 1 NC_008750.1 KEGG: son:SO2254 hypothetical protein; hypothetical protein 2134682 4659234 Sputw3181_1852 Shewanella sp. W3-18-1 hypothetical protein YP_963241.1 2133672 R 351745 CDS YP_963242.1 120598668 4659239 complement(2134682..2138170) 1 NC_008750.1 KEGG: shm:Shewmr7_1810 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor 2138170 4659239 Sputw3181_1853 Shewanella sp. W3-18-1 transcription-repair coupling factor YP_963242.1 2134682 R 351745 CDS YP_963243.1 120598669 4659241 complement(2138258..2138863) 1 NC_008750.1 KEGG: son:SO2256 hypothetical protein; hypothetical protein 2138863 4659241 Sputw3181_1854 Shewanella sp. W3-18-1 hypothetical protein YP_963243.1 2138258 R 351745 CDS YP_963244.1 120598670 4659245 2138958..2140190 1 NC_008750.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: she:Shewmr4_1732 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 2140190 4659245 Sputw3181_1855 Shewanella sp. W3-18-1 LolC/E family lipoprotein releasing system, transmembrane protein YP_963244.1 2138958 D 351745 CDS YP_963245.1 120598671 4659252 2140272..2140967 1 NC_008750.1 KEGG: shm:Shewmr7_1813 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 2140967 4659252 Sputw3181_1856 Shewanella sp. W3-18-1 lipoprotein releasing system, ATP-binding protein YP_963245.1 2140272 D 351745 CDS YP_963246.1 120598672 4659283 2140964..2142214 1 NC_008750.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: she:Shewmr4_1734 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 2142214 4659283 Sputw3181_1857 Shewanella sp. W3-18-1 LolC/E family lipoprotein releasing system, transmembrane protein YP_963246.1 2140964 D 351745 CDS YP_963247.1 120598673 4659326 complement(2142318..2143121) 1 NC_008750.1 PFAM: inositol monophosphatase; KEGG: shm:Shewmr7_1815 inositol-phosphate phosphatase; inositol-phosphate phosphatase 2143121 4659326 Sputw3181_1858 Shewanella sp. W3-18-1 inositol-phosphate phosphatase YP_963247.1 2142318 R 351745 CDS YP_963248.1 120598674 4659356 2143275..2144000 1 NC_008750.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO2261 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase 2144000 4659356 Sputw3181_1859 Shewanella sp. W3-18-1 RNA methyltransferase YP_963248.1 2143275 D 351745 CDS YP_963249.1 120598675 4659390 2144042..2144863 1 NC_008750.1 TIGRFAM: serine O-acetyltransferase; KEGG: shm:Shewmr7_1817 serine O-acetyltransferase; serine O-acetyltransferase 2144863 4659390 Sputw3181_1860 Shewanella sp. W3-18-1 serine O-acetyltransferase YP_963249.1 2144042 D 351745 CDS YP_963250.1 120598676 4659406 2145213..2145674 1 NC_008750.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: son:SO2263 Rrf2 family protein; BadM/Rrf2 family transcriptional regulator 2145674 4659406 Sputw3181_1861 Shewanella sp. W3-18-1 BadM/Rrf2 family transcriptional regulator YP_963250.1 2145213 D 351745 CDS YP_963251.1 120598677 4659407 2145751..2146965 1 NC_008750.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 2146965 4659407 Sputw3181_1862 Shewanella sp. W3-18-1 cysteine desulfurase YP_963251.1 2145751 D 351745 CDS YP_963252.1 120598678 4659438 2147004..2147387 1 NC_008750.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: shm:Shewmr7_1820 FeS cluster assembly scaffold IscU; scaffold protein 2147387 4659438 Sputw3181_1863 Shewanella sp. W3-18-1 scaffold protein YP_963252.1 2147004 D 351745 CDS YP_963253.1 120598679 4659452 2147402..2147725 1 NC_008750.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: shm:Shewmr7_1821 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA 2147725 4659452 Sputw3181_1864 Shewanella sp. W3-18-1 iron-sulfur cluster assembly protein IscA YP_963253.1 2147402 D 351745 CDS YP_963254.1 120598680 4659453 2147742..2148266 1 NC_008750.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 2148266 hscB 4659453 hscB Shewanella sp. W3-18-1 co-chaperone HscB YP_963254.1 2147742 D 351745 CDS YP_963255.1 120598681 4659459 2148335..2150197 1 NC_008750.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2150197 hscA 4659459 hscA Shewanella sp. W3-18-1 chaperone protein HscA YP_963255.1 2148335 D 351745 CDS YP_963256.1 120598682 4659464 2150206..2150544 1 NC_008750.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: shm:Shewmr7_1824 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system 2150544 4659464 Sputw3181_1867 Shewanella sp. W3-18-1 ferredoxin, 2Fe-2S type, ISC system YP_963256.1 2150206 D 351745 CDS YP_963257.1 120598683 4659474 2150703..2151608 1 NC_008750.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: shm:Shewmr7_1825 alpha-L-glutamate ligases, RimK family; alpha-L-glutamate ligase 2151608 4659474 Sputw3181_1868 Shewanella sp. W3-18-1 alpha-L-glutamate ligase YP_963257.1 2150703 D 351745 CDS YP_963258.1 120598684 4659477 2151679..2151876 1 NC_008750.1 PFAM: protein of unknown function DUF528; KEGG: shm:Shewmr7_1826 protein of unknown function DUF528; hypothetical protein 2151876 4659477 Sputw3181_1869 Shewanella sp. W3-18-1 hypothetical protein YP_963258.1 2151679 D 351745 CDS YP_963259.1 120598685 4659141 2152472..2152903 1 NC_008750.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2152903 ndk 4659141 ndk Shewanella sp. W3-18-1 nucleoside diphosphate kinase YP_963259.1 2152472 D 351745 CDS YP_963260.1 120598686 4659144 2153141..2153584 1 NC_008750.1 PFAM: heat shock protein Hsp20; KEGG: son:SO2277 16 kDa heat shock protein A; heat shock protein Hsp20 2153584 4659144 Sputw3181_1871 Shewanella sp. W3-18-1 heat shock protein Hsp20 YP_963260.1 2153141 D 351745 CDS YP_963261.1 120598687 4659515 complement(2153655..2154149) 1 NC_008750.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2154149 ilvH 4659515 ilvH Shewanella sp. W3-18-1 acetolactate synthase 3 regulatory subunit YP_963261.1 2153655 R 351745 CDS YP_963262.1 120598688 4659149 complement(2154149..2155867) 1 NC_008750.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: she:Shewmr4_1750 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase 3 catalytic subunit 2155867 4659149 Sputw3181_1873 Shewanella sp. W3-18-1 acetolactate synthase 3 catalytic subunit YP_963262.1 2154149 R 351745 CDS YP_963263.1 120598689 4659526 complement(2156000..2156236) 1 NC_008750.1 hypothetical protein 2156236 4659526 Sputw3181_1874 Shewanella sp. W3-18-1 hypothetical protein YP_963263.1 2156000 R 351745 CDS YP_963264.1 120598690 4659528 complement(2156282..2157502) 1 NC_008750.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_1751 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 2157502 4659528 Sputw3181_1875 Shewanella sp. W3-18-1 Bcr/CflA subfamily drug resistance transporter YP_963264.1 2156282 R 351745 CDS YP_963265.1 120598691 4659530 2157974..2159848 1 NC_008750.1 KEGG: she:Shewmr4_1752 alkaline phosphatase; alkaline phosphatase 2159848 4659530 Sputw3181_1876 Shewanella sp. W3-18-1 alkaline phosphatase YP_963265.1 2157974 D 351745 CDS YP_963266.1 120598692 4659531 complement(2159975..2161324) 1 NC_008750.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: she:Shewmr4_1753 transcriptional regulator, GntR family; GntR family transcriptional regulator 2161324 4659531 Sputw3181_1877 Shewanella sp. W3-18-1 GntR family transcriptional regulator YP_963266.1 2159975 R 351745 CDS YP_963267.1 120598693 4659535 2161432..2162058 1 NC_008750.1 KEGG: shm:Shewmr7_1834 lysine exporter protein (LysE/YggA); lysine exporter protein (LysE/YggA) 2162058 4659535 Sputw3181_1878 Shewanella sp. W3-18-1 lysine exporter protein (LysE/YggA) YP_963267.1 2161432 D 351745 CDS YP_963268.1 120598694 4659551 2162239..2164011 1 NC_008750.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: she:Shewmr4_1755 sulphate transporter; sulfate transporter 2164011 4659551 Sputw3181_1879 Shewanella sp. W3-18-1 sulfate transporter YP_963268.1 2162239 D 351745 CDS YP_963269.1 120598695 4661580 complement(2164077..2164283) 1 NC_008750.1 KEGG: shm:Shewmr7_1836 hypothetical protein; hypothetical protein 2164283 4661580 Sputw3181_1880 Shewanella sp. W3-18-1 hypothetical protein YP_963269.1 2164077 R 351745 CDS YP_963270.1 120598696 4660248 2164687..2165691 1 NC_008750.1 PFAM: Rhodanese domain protein; KEGG: she:Shewmr4_1760 rhodanese domain protein; hypothetical protein 2165691 4660248 Sputw3181_1881 Shewanella sp. W3-18-1 hypothetical protein YP_963270.1 2164687 D 351745 CDS YP_963271.1 120598697 4660247 2165892..2166362 1 NC_008750.1 KEGG: shm:Shewmr7_1839 hypothetical protein; hypothetical protein 2166362 4660247 Sputw3181_1882 Shewanella sp. W3-18-1 hypothetical protein YP_963271.1 2165892 D 351745 CDS YP_963272.1 120598698 4659772 complement(2166476..2166739) 1 NC_008750.1 KEGG: son:SO2479 hypothetical protein; hypothetical protein 2166739 4659772 Sputw3181_1883 Shewanella sp. W3-18-1 hypothetical protein YP_963272.1 2166476 R 351745 CDS YP_963273.1 120598699 4659687 complement(2166775..2167512) 1 NC_008750.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2167512 4659687 Sputw3181_1884 Shewanella sp. W3-18-1 3-deoxy-manno-octulosonate cytidylyltransferase YP_963273.1 2166775 R 351745 CDS YP_963274.1 120598700 4659674 complement(2167745..2168362) 1 NC_008750.1 PFAM: carbonic anhydrase; KEGG: she:Shewmr4_1854 carbonate dehydratase; carbonate dehydratase 2168362 4659674 Sputw3181_1885 Shewanella sp. W3-18-1 carbonate dehydratase YP_963274.1 2167745 R 351745 CDS YP_963275.1 120598701 4659675 complement(2168482..2169324) 1 NC_008750.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO2473 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold domain-containing protein 2169324 4659675 Sputw3181_1886 Shewanella sp. W3-18-1 alpha/beta hydrolase fold domain-containing protein YP_963275.1 2168482 R 351745 CDS YP_963276.1 120598702 4659891 complement(2169379..2170095) 1 NC_008750.1 PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: son:SO2472 D-alanyl-D-alanine carboxypeptidase-related protein; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin 2170095 4659891 Sputw3181_1887 Shewanella sp. W3-18-1 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin YP_963276.1 2169379 R 351745 CDS YP_963277.1 120598703 4659663 complement(2170089..2171228) 1 NC_008750.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2171228 4659663 Sputw3181_1888 Shewanella sp. W3-18-1 succinyl-diaminopimelate desuccinylase YP_963277.1 2170089 R 351745 CDS YP_963278.1 120598704 4659664 complement(2171228..2171635) 1 NC_008750.1 PFAM: arsenate reductase; KEGG: shm:Shewmr7_2120 hypothetical protein; arsenate reductase 2171635 4659664 Sputw3181_1889 Shewanella sp. W3-18-1 arsenate reductase YP_963278.1 2171228 R 351745 CDS YP_963279.1 120598705 4659645 complement(2171686..2173554) 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis protein domain protein; KEGG: vvu:VV21623 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2173554 4659645 Sputw3181_1890 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_963279.1 2171686 R 351745 CDS YP_963280.1 120598706 4659901 complement(2173780..2175390) 1 NC_008750.1 KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 2175390 4659901 Sputw3181_1891 Shewanella sp. W3-18-1 IS4 family transposase YP_963280.1 2173780 R 351745 CDS YP_963281.1 120598707 4659627 complement(2175638..2176147) 1 NC_008750.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2176147 4659627 Sputw3181_1892 Shewanella sp. W3-18-1 PTS system glucose-specific transporter YP_963281.1 2175638 R 351745 CDS YP_963282.1 120598708 4659644 complement(2176221..2177924) 1 NC_008750.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: she:Shewmr4_1764 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 2177924 4659644 Sputw3181_1893 Shewanella sp. W3-18-1 phosphoenolpyruvate-protein phosphotransferase YP_963282.1 2176221 R 351745 CDS YP_963283.1 120598709 4659613 complement(2177968..2178225) 1 NC_008750.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: son:SO2238 phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 2178225 4659613 Sputw3181_1894 Shewanella sp. W3-18-1 phosphotransferase system, phosphocarrier protein HPr YP_963283.1 2177968 R 351745 CDS YP_963284.1 120598710 4659621 complement(2178248..2178643) 1 NC_008750.1 KEGG: shm:Shewmr7_1844 hypothetical protein; hypothetical protein 2178643 4659621 Sputw3181_1895 Shewanella sp. W3-18-1 hypothetical protein YP_963284.1 2178248 R 351745 CDS YP_963285.1 120598711 4659611 complement(2178776..2180413) 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: shm:Shewmr7_1845 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2180413 4659611 Sputw3181_1896 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_963285.1 2178776 R 351745 CDS YP_963286.1 120598712 4659592 2180773..2181495 1 NC_008750.1 KEGG: son:SO2241 hypothetical protein; hypothetical protein 2181495 4659592 Sputw3181_1897 Shewanella sp. W3-18-1 hypothetical protein YP_963286.1 2180773 D 351745 CDS YP_963287.1 120598713 4659608 complement(2181568..2182206) 1 NC_008750.1 KEGG: son:SO2245 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2182206 4659608 Sputw3181_1898 Shewanella sp. W3-18-1 DNA polymerase III subunit epsilon YP_963287.1 2181568 R 351745 CDS YP_963288.1 120598714 4659922 complement(2182287..2182679) 1 NC_008750.1 KEGG: son:SO2146 hypothetical protein; hypothetical protein 2182679 4659922 Sputw3181_1899 Shewanella sp. W3-18-1 hypothetical protein YP_963288.1 2182287 R 351745 CDS YP_963289.1 120598715 4659559 complement(2182692..2184752) 1 NC_008750.1 KEGG: shm:Shewmr7_1851 exodeoxyribonuclease V, alpha subunit; TIGRFAM: exodeoxyribonuclease V, alpha subunit; SMART: AAA ATPase; exodeoxyribonuclease V subunit alpha 2184752 4659559 Sputw3181_1900 Shewanella sp. W3-18-1 exodeoxyribonuclease V subunit alpha YP_963289.1 2182692 R 351745 CDS YP_963290.1 120598716 4659565 complement(2184749..2188519) 1 NC_008750.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: shm:Shewmr7_1852 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 2188519 4659565 Sputw3181_1901 Shewanella sp. W3-18-1 exodeoxyribonuclease V subunit beta YP_963290.1 2184749 R 351745 CDS YP_963291.1 120598717 4659566 complement(2188522..2192202) 1 NC_008750.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: she:Shewmr4_1775 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 2192202 4659566 Sputw3181_1902 Shewanella sp. W3-18-1 exodeoxyribonuclease V subunit gamma YP_963291.1 2188522 R 351745 CDS YP_963292.1 120598718 4659553 complement(2192354..2194483) 1 NC_008750.1 PFAM: transglutaminase domain protein; KEGG: son:SO2150 transglutaminase family protein; transglutaminase domain-containing protein 2194483 4659553 Sputw3181_1903 Shewanella sp. W3-18-1 transglutaminase domain-containing protein YP_963292.1 2192354 R 351745 CDS YP_963293.1 120598719 4659562 complement(2194480..2195544) 1 NC_008750.1 PFAM: protein of unknown function DUF58; KEGG: shm:Shewmr7_1855 protein of unknown function DUF58; hypothetical protein 2195544 4659562 Sputw3181_1904 Shewanella sp. W3-18-1 hypothetical protein YP_963293.1 2194480 R 351745 CDS YP_963294.1 120598720 4659948 complement(2195616..2196527) 1 NC_008750.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: son:SO2153 MoxR protein; ATPase 2196527 4659948 Sputw3181_1905 Shewanella sp. W3-18-1 ATPase YP_963294.1 2195616 R 351745 CDS YP_963295.1 120598721 4659955 complement(2196674..2197378) 1 NC_008750.1 PFAM: EAL domain protein; KEGG: she:Shewmr4_2112 diguanylate phosphodiesterase; diguanylate phosphodiesterase 2197378 4659955 Sputw3181_1906 Shewanella sp. W3-18-1 diguanylate phosphodiesterase YP_963295.1 2196674 R 351745 CDS YP_963296.1 120598722 4660000 complement(2197594..2199519) 1 NC_008750.1 PFAM: Lytic transglycosylase, catalytic; KEGG: shm:Shewmr7_1863 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic 2199519 4660000 Sputw3181_1907 Shewanella sp. W3-18-1 lytic transglycosylase, catalytic YP_963296.1 2197594 R 351745 CDS YP_963297.1 120598723 4660019 complement(2199597..2201153) 1 NC_008750.1 PFAM: protein of unknown function DUF195; KEGG: son:SO2041 hypothetical protein; hypothetical protein 2201153 4660019 Sputw3181_1908 Shewanella sp. W3-18-1 hypothetical protein YP_963297.1 2199597 R 351745 CDS YP_963298.1 120598724 4660033 2201396..2202430 1 NC_008750.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 2202430 4660033 Sputw3181_1909 Shewanella sp. W3-18-1 putative sulfite oxidase subunit YedY YP_963298.1 2201396 D 351745 CDS YP_963299.1 120598725 4660037 2202453..2203076 1 NC_008750.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 2203076 4660037 Sputw3181_1910 Shewanella sp. W3-18-1 putative sulfite oxidase subunit YedZ YP_963299.1 2202453 D 351745 CDS YP_963300.1 120598726 4660041 complement(2203150..2203647) 1 NC_008750.1 KEGG: son:SO2044 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2203647 4660041 Sputw3181_1911 Shewanella sp. W3-18-1 lactoylglutathione lyase YP_963300.1 2203150 R 351745 CDS YP_963301.1 120598727 4660044 2204182..2205375 1 NC_008750.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: shm:Shewmr7_1868 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 2205375 4660044 Sputw3181_1912 Shewanella sp. W3-18-1 cation diffusion facilitator family transporter YP_963301.1 2204182 D 351745 CDS YP_963302.1 120598728 4660051 2205375..2205824 1 NC_008750.1 PFAM: regulatory protein, MarR; KEGG: shm:Shewmr7_1869 transcriptional regulator, MarR family; MarR family transcriptional regulator 2205824 4660051 Sputw3181_1913 Shewanella sp. W3-18-1 MarR family transcriptional regulator YP_963302.1 2205375 D 351745 CDS YP_963303.1 120598729 4660104 2206036..2208129 1 NC_008750.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO2047 prolyl oligopeptidase family protein; prolyl oligopeptidase 2208129 4660104 Sputw3181_1914 Shewanella sp. W3-18-1 prolyl oligopeptidase YP_963303.1 2206036 D 351745 CDS YP_963304.1 120598730 4660124 2208418..2210043 1 NC_008750.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: she:Shewmr4_2103 sulfatase; sulfatase 2210043 4660124 Sputw3181_1915 Shewanella sp. W3-18-1 sulfatase YP_963304.1 2208418 D 351745 CDS YP_963305.1 120598731 4659842 2210111..2211217 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_1872 diguanylate cyclase; diguanylate cyclase 2211217 4659842 Sputw3181_1916 Shewanella sp. W3-18-1 diguanylate cyclase YP_963305.1 2210111 D 351745 CDS YP_963306.1 120598732 4660132 complement(2211286..2212248) 1 NC_008750.1 PFAM: UspA domain protein; KEGG: pat:Patl_2285 UspA; UspA domain-containing protein 2212248 4660132 Sputw3181_1917 Shewanella sp. W3-18-1 UspA domain-containing protein YP_963306.1 2211286 R 351745 CDS YP_963307.1 120598733 4660135 complement(2212279..2213904) 1 NC_008750.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pat:Patl_2284 sodium/hydrogen exchanger; sodium/hydrogen exchanger 2213904 4660135 Sputw3181_1918 Shewanella sp. W3-18-1 sodium/hydrogen exchanger YP_963307.1 2212279 R 351745 CDS YP_963308.1 120598734 4660137 complement(2214128..2216533) 1 NC_008750.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; KEGG: son:SO2094 hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF 2216533 4660137 Sputw3181_1919 Shewanella sp. W3-18-1 (NiFe) hydrogenase maturation protein HypF YP_963308.1 2214128 R 351745 CDS YP_963309.1 120598735 4660142 complement(2216564..2218417) 1 NC_008750.1 KEGG: son:SO2095 hypothetical protein; hypothetical protein 2218417 4660142 Sputw3181_1920 Shewanella sp. W3-18-1 hypothetical protein YP_963309.1 2216564 R 351745 CDS YP_963310.1 120598736 4660157 complement(2218398..2218961) 1 NC_008750.1 TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52, hydrogen uptake protein; KEGG: son:SO2096 hydrogenase expression/formation protein; hydrogenase expression/formation protein 2218961 4660157 Sputw3181_1921 Shewanella sp. W3-18-1 hydrogenase expression/formation protein YP_963310.1 2218398 R 351745 CDS YP_963311.1 120598737 4660158 complement(2218969..2219643) 1 NC_008750.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: shm:Shewmr7_2157 Ni/Fe-hydrogenase, b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 2219643 4660158 Sputw3181_1922 Shewanella sp. W3-18-1 Ni/Fe-hydrogenase, b-type cytochrome subunit YP_963311.1 2218969 R 351745 CDS YP_963312.1 120598738 4660221 complement(2219663..2221366) 1 NC_008750.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: son:SO2098 hydrogenase large chain; nickel-dependent hydrogenase, large subunit 2221366 4660221 Sputw3181_1923 Shewanella sp. W3-18-1 nickel-dependent hydrogenase, large subunit YP_963312.1 2219663 R 351745 CDS YP_963313.1 120598739 4661775 complement(2221370..2222506) 1 NC_008750.1 KEGG: son:SO2099 hydrogenase small chain; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; hydrogenase (NiFe) small subunit HydA 2222506 4661775 Sputw3181_1924 Shewanella sp. W3-18-1 hydrogenase (NiFe) small subunit HydA YP_963313.1 2221370 R 351745 CDS YP_963314.1 120598740 4660283 2222871..2223338 1 NC_008750.1 PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_2154 redoxin domain protein; redoxin domain-containing protein 2223338 4660283 Sputw3181_1925 Shewanella sp. W3-18-1 redoxin domain-containing protein YP_963314.1 2222871 D 351745 CDS YP_963315.1 120598741 4660235 2223342..2223560 1 NC_008750.1 KEGG: shm:Shewmr7_2153 lipoprotein, putative; putative lipoprotein 2223560 4660235 Sputw3181_1926 Shewanella sp. W3-18-1 putative lipoprotein YP_963315.1 2223342 D 351745 CDS YP_963316.1 120598742 4660317 2223639..2224958 1 NC_008750.1 KEGG: shm:Shewmr7_2152 hypothetical protein; hypothetical protein 2224958 4660317 Sputw3181_1927 Shewanella sp. W3-18-1 hypothetical protein YP_963316.1 2223639 D 351745 CDS YP_963317.1 120598743 4660341 2225197..2226024 1 NC_008750.1 PFAM: ApbE family lipoprotein; KEGG: son:SO2103 ApbE family protein; ApbE family lipoprotein 2226024 4660341 Sputw3181_1928 Shewanella sp. W3-18-1 ApbE family lipoprotein YP_963317.1 2225197 D 351745 CDS YP_963318.1 120598744 4660961 2226035..2226694 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2104 DNA-binding response regulator YgiX, putative; two component transcriptional regulator 2226694 4660961 Sputw3181_1929 Shewanella sp. W3-18-1 two component transcriptional regulator YP_963318.1 2226035 D 351745 CDS YP_963319.1 120598745 4661001 2226766..2228160 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2105 sensor protein YgiY, putative; integral membrane sensor signal transduction histidine kinase 2228160 4661001 Sputw3181_1930 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_963319.1 2226766 D 351745 CDS YP_963320.1 120598746 4660340 2228609..2230243 1 NC_008750.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 2230243 mdoG 4660340 mdoG Shewanella sp. W3-18-1 glucan biosynthesis protein G YP_963320.1 2228609 D 351745 CDS YP_963321.1 120598747 4660272 2230267..2232450 1 NC_008750.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 2232450 4660272 Sputw3181_1932 Shewanella sp. W3-18-1 glucosyltransferase MdoH YP_963321.1 2230267 D 351745 CDS YP_963322.1 120598748 4660287 complement(2232624..2233646) 1 NC_008750.1 converts asparagine to aspartate and ammonia; asparaginase 2233646 ansA 4660287 ansA Shewanella sp. W3-18-1 asparaginase YP_963322.1 2232624 R 351745 CDS YP_963323.1 120598749 4660280 complement(2233777..2235624) 1 NC_008750.1 TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: she:Shewmr4_1909 signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 67K type 2235624 4660280 Sputw3181_1934 Shewanella sp. W3-18-1 signal peptide peptidase SppA, 67K type YP_963323.1 2233777 R 351745 CDS YP_963324.1 120598750 4660254 2235790..2237808 1 NC_008750.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_1910 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 2237808 4660254 Sputw3181_1935 Shewanella sp. W3-18-1 NADH:flavin oxidoreductase YP_963324.1 2235790 D 351745 CDS YP_963325.1 120598751 4660253 2237963..2238445 1 NC_008750.1 PFAM: YCII-related protein; KEGG: hne:HNE_0837 YCII domain protein; hypothetical protein 2238445 4660253 Sputw3181_1936 Shewanella sp. W3-18-1 hypothetical protein YP_963325.1 2237963 D 351745 CDS YP_963326.1 120598752 4660252 complement(2238477..2238932) 1 NC_008750.1 PFAM: ferredoxin; KEGG: shm:Shewmr7_2064 ferredoxin; ferredoxin 2238932 4660252 Sputw3181_1937 Shewanella sp. W3-18-1 ferredoxin YP_963326.1 2238477 R 351745 CDS YP_963327.1 120598753 4660256 complement(2238944..2240074) 1 NC_008750.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2240074 nrdB 4660256 nrdB Shewanella sp. W3-18-1 ribonucleotide-diphosphate reductase subunit beta YP_963327.1 2238944 R 351745 CDS YP_963328.1 120598754 4660245 complement(2240139..2242427) 1 NC_008750.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2242427 4660245 Sputw3181_1939 Shewanella sp. W3-18-1 ribonucleotide-diphosphate reductase subunit alpha YP_963328.1 2240139 R 351745 CDS YP_963329.1 120598755 4660228 complement(2242821..2243489) 1 NC_008750.1 KEGG: shm:Shewmr7_2061 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 2243489 4660228 Sputw3181_1940 Shewanella sp. W3-18-1 HAD family hydrolase YP_963329.1 2242821 R 351745 CDS YP_963330.1 120598756 4660196 complement(2243491..2244201) 1 NC_008750.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2244201 4660196 Sputw3181_1941 Shewanella sp. W3-18-1 3-demethylubiquinone-9 3-methyltransferase YP_963330.1 2243491 R 351745 CDS YP_963331.1 120598757 4659812 2244586..2247339 1 NC_008750.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: she:Shewmr4_1919 DNA gyrase, A subunit; DNA gyrase subunit A 2247339 4659812 Sputw3181_1942 Shewanella sp. W3-18-1 DNA gyrase subunit A YP_963331.1 2244586 D 351745 CDS YP_963332.1 120598758 4660203 2247441..2248532 1 NC_008750.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2248532 4660203 Sputw3181_1943 Shewanella sp. W3-18-1 phosphoserine aminotransferase YP_963332.1 2247441 D 351745 CDS YP_963333.1 120598759 4660208 2248872..2250545 1 NC_008750.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 2250545 4660208 Sputw3181_1944 Shewanella sp. W3-18-1 ribulokinase YP_963333.1 2248872 D 351745 CDS YP_963334.1 120598760 4660212 2250547..2251242 1 NC_008750.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 2251242 araD 4660212 araD Shewanella sp. W3-18-1 L-ribulose-5-phosphate 4-epimerase YP_963334.1 2250547 D 351745 CDS YP_963335.1 120598761 4660206 2251273..2252790 1 NC_008750.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 2252790 4660206 Sputw3181_1946 Shewanella sp. W3-18-1 L-arabinose isomerase YP_963335.1 2251273 D 351745 CDS YP_963336.1 120598762 4660193 2252898..2253503 1 NC_008750.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shm:Shewmr7_1994 HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase 2253503 4660193 Sputw3181_1947 Shewanella sp. W3-18-1 beta-phosphoglucomutase family hydrolase YP_963336.1 2252898 D 351745 CDS YP_963337.1 120598763 4659810 2253707..2254423 1 NC_008750.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: shm:Shewmr7_1993 GntR domain protein; GntR family transcriptional regulator 2254423 4659810 Sputw3181_1948 Shewanella sp. W3-18-1 GntR family transcriptional regulator YP_963337.1 2253707 D 351745 CDS YP_963338.1 120598764 4660504 complement(2254498..2255433) 1 NC_008750.1 PFAM: glycoside hydrolase, family 43; KEGG: she:Shewmr4_1982 glycoside hydrolase, family 43; glycoside hydrolase 2255433 4660504 Sputw3181_1949 Shewanella sp. W3-18-1 glycoside hydrolase YP_963338.1 2254498 R 351745 CDS YP_963339.1 120598765 4660508 2255638..2257371 1 NC_008750.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 2257371 4660508 Sputw3181_1950 Shewanella sp. W3-18-1 dihydroxy-acid dehydratase YP_963339.1 2255638 D 351745 CDS YP_963340.1 120598766 4660518 2257431..2258201 1 NC_008750.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: she:Shewmr4_1984 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2258201 4660518 Sputw3181_1951 Shewanella sp. W3-18-1 short-chain dehydrogenase/reductase SDR YP_963340.1 2257431 D 351745 CDS YP_963341.1 120598767 4660526 2258304..2259359 1 NC_008750.1 PFAM: Aldose 1-epimerase; KEGG: shm:Shewmr7_1989 aldose 1-epimerase; aldose 1-epimerase 2259359 4660526 Sputw3181_1952 Shewanella sp. W3-18-1 aldose 1-epimerase YP_963341.1 2258304 D 351745 CDS YP_963342.1 120598768 4660533 2259483..2260421 1 NC_008750.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: shm:Shewmr7_1988 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 2260421 4660533 Sputw3181_1953 Shewanella sp. W3-18-1 periplasmic binding protein/LacI transcriptional regulator YP_963342.1 2259483 D 351745 CDS YP_963343.1 120598769 4660550 2260458..2261957 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_1987 ABC transporter related; ABC transporter-like protein 2261957 4660550 Sputw3181_1954 Shewanella sp. W3-18-1 ABC transporter-like protein YP_963343.1 2260458 D 351745 CDS YP_963344.1 120598770 4660555 2261958..2263076 1 NC_008750.1 PFAM: inner-membrane translocator; KEGG: shm:Shewmr7_1986 inner-membrane translocator; inner-membrane translocator 2263076 4660555 Sputw3181_1955 Shewanella sp. W3-18-1 inner-membrane translocator YP_963344.1 2261958 D 351745 CDS YP_963345.1 120598771 4660560 2263073..2264035 1 NC_008750.1 membrane component of a putative sugar ABC transporter system; inner membrane ABC transporter permease YjfF 2264035 4660560 Sputw3181_1956 Shewanella sp. W3-18-1 inner membrane ABC transporter permease YjfF YP_963345.1 2263073 D 351745 CDS YP_963346.1 120598772 4660565 2264010..2265119 1 NC_008750.1 PFAM: glycoside hydrolase, family 43; KEGG: shm:Shewmr7_1984 alpha-N-arabinofuranosidase; alpha-N-arabinofuranosidase 2265119 4660565 Sputw3181_1957 Shewanella sp. W3-18-1 alpha-N-arabinofuranosidase YP_963346.1 2264010 D 351745 CDS YP_963347.1 120598773 4660568 2265348..2266967 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: pfl:PFL_1735 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2266967 4660568 Sputw3181_1958 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_963347.1 2265348 D 351745 CDS YP_963348.1 120598774 4660580 complement(2267026..2267973) 1 NC_008750.1 PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0777 ribosomal protein L11 methyltransferase; alpha-N-arabinofuranosidase 2267973 4660580 Sputw3181_1959 Shewanella sp. W3-18-1 alpha-N-arabinofuranosidase YP_963348.1 2267026 R 351745 CDS YP_963349.1 120598775 4660590 complement(2268001..2269416) 1 NC_008750.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_1994 sugar (glycoside-pentoside-hexuronide) transporter; sugar (glycoside-Pentoside-hexuronide) transporter 2269416 4660590 Sputw3181_1960 Shewanella sp. W3-18-1 sugar (glycoside-Pentoside-hexuronide) transporter YP_963349.1 2268001 R 351745 CDS YP_963350.1 120598776 4660594 2269630..2270703 1 NC_008750.1 PFAM: glycoside hydrolase, family 43; KEGG: shm:Shewmr7_1980 arabinan endo-1,5-alpha-L-arabinosidase; arabinan endo-1,5-alpha-L-arabinosidase 2270703 4660594 Sputw3181_1961 Shewanella sp. W3-18-1 arabinan endo-1,5-alpha-L-arabinosidase YP_963350.1 2269630 D 351745 CDS YP_963351.1 120598777 4660595 2270706..2272592 1 NC_008750.1 PFAM: Ricin B lectin; glycoside hydrolase, family 43; KEGG: she:Shewmr4_1996 glycoside hydrolase, family 43; alpha-N-arabinofuranosidase 2272592 4660595 Sputw3181_1962 Shewanella sp. W3-18-1 alpha-N-arabinofuranosidase YP_963351.1 2270706 D 351745 CDS YP_963352.1 120598778 4660684 complement(2272816..2273580) 1 NC_008750.1 PFAM: protein of unknown function DUF81; KEGG: she:Shewmr4_1997 protein of unknown function DUF81; hypothetical protein 2273580 4660684 Sputw3181_1963 Shewanella sp. W3-18-1 hypothetical protein YP_963352.1 2272816 R 351745 CDS YP_963353.1 120598779 4660690 complement(2273835..2276669) 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_1977 TonB-dependent receptor; TonB-dependent receptor 2276669 4660690 Sputw3181_1964 Shewanella sp. W3-18-1 TonB-dependent receptor YP_963353.1 2273835 R 351745 CDS YP_963354.1 120598780 4660698 2277243..2280581 1 NC_008750.1 PFAM: glycoside hydrolase, family 43; KEGG: she:Shewmr4_1999 glycoside hydrolase, family 43; glycoside hydrolase 2280581 4660698 Sputw3181_1965 Shewanella sp. W3-18-1 glycoside hydrolase YP_963354.1 2277243 D 351745 CDS YP_963355.1 120598781 4660704 2280743..2281651 1 NC_008750.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: shm:Shewmr7_1974 SMP-30/gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein 2281651 4660704 Sputw3181_1966 Shewanella sp. W3-18-1 SMP-30/gluconolaconase/LRE domain-containing protein YP_963355.1 2280743 D 351745 CDS YP_963356.1 120598782 4660741 complement(2281699..2282889) 1 NC_008750.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2282889 4660741 Sputw3181_1967 Shewanella sp. W3-18-1 aromatic amino acid aminotransferase YP_963356.1 2281699 R 351745 CDS YP_963357.1 120598783 4660420 2283324..2284604 1 NC_008750.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2284604 4660420 Sputw3181_1969 Shewanella sp. W3-18-1 3-phosphoshikimate 1-carboxyvinyltransferase YP_963357.1 2283324 D 351745 CDS YP_963358.1 120598784 4660786 2284790..2285482 1 NC_008750.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2285482 cmk 4660786 cmk Shewanella sp. W3-18-1 cytidylate kinase YP_963358.1 2284790 D 351745 CDS YP_963359.1 120598785 4660413 2285586..2287253 1 NC_008750.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2287253 rpsA 4660413 rpsA Shewanella sp. W3-18-1 30S ribosomal protein S1 YP_963359.1 2285586 D 351745 CDS YP_963360.1 120598786 4660788 2287329..2287616 1 NC_008750.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2287616 ihfB 4660788 ihfB Shewanella sp. W3-18-1 integration host factor subunit beta YP_963360.1 2287329 D 351745 CDS YP_963361.1 120598787 4660794 2287739..2288014 1 NC_008750.1 PFAM: protein of unknown function DUF1049; KEGG: shm:Shewmr7_2052 protein of unknown function DUF1049; hypothetical protein 2288014 4660794 Sputw3181_1973 Shewanella sp. W3-18-1 hypothetical protein YP_963361.1 2287739 D 351745 CDS YP_963362.1 120598788 4660797 2288016..2289176 1 NC_008750.1 KEGG: son:SO2399 hypothetical protein; hypothetical protein 2289176 4660797 Sputw3181_1974 Shewanella sp. W3-18-1 hypothetical protein YP_963362.1 2288016 D 351745 CDS YP_963363.1 120598789 4660801 2289222..2289917 1 NC_008750.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2289917 4660801 Sputw3181_1975 Shewanella sp. W3-18-1 orotidine 5'-phosphate decarboxylase YP_963363.1 2289222 D 351745 CDS YP_963364.1 120598790 4660802 2289969..2290790 1 NC_008750.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: shm:Shewmr7_2049 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2290790 4660802 Sputw3181_1976 Shewanella sp. W3-18-1 short chain dehydrogenase YP_963364.1 2289969 D 351745 CDS YP_963365.1 120598791 4660805 2290861..2291403 1 NC_008750.1 KEGG: she:Shewmr4_1930 hypothetical protein; hypothetical protein 2291403 4660805 Sputw3181_1977 Shewanella sp. W3-18-1 hypothetical protein YP_963365.1 2290861 D 351745 CDS YP_963366.1 120598792 4660834 2291618..2293375 1 NC_008750.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: she:Shewmr4_1931 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2293375 4660834 Sputw3181_1978 Shewanella sp. W3-18-1 acyl-CoA dehydrogenase domain-containing protein YP_963366.1 2291618 D 351745 CDS YP_963367.1 120598793 4660840 complement(2293440..2294954) 1 NC_008750.1 KEGG: shm:Shewmr7_2044 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 2294954 4660840 Sputw3181_1979 Shewanella sp. W3-18-1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_963367.1 2293440 R 351745 CDS YP_963368.1 120598794 4660850 complement(2294980..2295156) 1 NC_008750.1 KEGG: shm:Shewmr7_2043 hypothetical protein; hypothetical protein 2295156 4660850 Sputw3181_1980 Shewanella sp. W3-18-1 hypothetical protein YP_963368.1 2294980 R 351745 CDS YP_963369.1 120598795 4660851 2295456..2295788 1 NC_008750.1 KEGG: shm:Shewmr7_2042 hypothetical protein; hypothetical protein 2295788 4660851 Sputw3181_1981 Shewanella sp. W3-18-1 hypothetical protein YP_963369.1 2295456 D 351745 CDS YP_963370.1 120598796 4660858 2295800..2297113 1 NC_008750.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2297113 pssA 4660858 pssA Shewanella sp. W3-18-1 phosphatidylserine synthase YP_963370.1 2295800 D 351745 CDS YP_963371.1 120598797 4660866 complement(2297170..2298438) 1 NC_008750.1 multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 2298438 emrD 4660866 emrD Shewanella sp. W3-18-1 multidrug resistance protein D YP_963371.1 2297170 R 351745 CDS YP_963372.1 120598798 4660872 complement(2298780..2299964) 1 NC_008750.1 PFAM: beta-lactamase; KEGG: shm:Shewmr7_2039 beta-lactamase; beta-lactamase 2299964 ampC 4660872 ampC Shewanella sp. W3-18-1 beta-lactamase YP_963372.1 2298780 R 351745 CDS YP_963373.1 120598799 4660877 2300124..2300894 1 NC_008750.1 PFAM: DTW domain containing protein; KEGG: son:SO2387 conserved hypothetical protein; DTW domain-containing protein 2300894 4660877 Sputw3181_1985 Shewanella sp. W3-18-1 DTW domain-containing protein YP_963373.1 2300124 D 351745 CDS YP_963374.1 120598800 4660880 complement(2300989..2303046) 1 NC_008750.1 PFAM: protein of unknown function DUF839; KEGG: shm:Shewmr7_2034 twin-arginine translocation pathway signal; hypothetical protein 2303046 4660880 Sputw3181_1986 Shewanella sp. W3-18-1 hypothetical protein YP_963374.1 2300989 R 351745 CDS YP_963375.1 120598801 4660909 2303301..2303624 1 NC_008750.1 KEGG: she:Shewmr4_1945 hypothetical protein; hypothetical protein 2303624 4660909 Sputw3181_1987 Shewanella sp. W3-18-1 hypothetical protein YP_963375.1 2303301 D 351745 CDS YP_963376.1 120598802 4661053 2303836..2305815 1 NC_008750.1 KEGG: shm:Shewmr7_2030 ATP-dependent DNA helicase, RecQ family; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 2305815 4661053 Sputw3181_1988 Shewanella sp. W3-18-1 ATP-dependent DNA helicase RecQ YP_963376.1 2303836 D 351745 CDS YP_963377.1 120598803 4661183 2305834..2306109 1 NC_008750.1 KEGG: vfi:VF0709 hypothetical protein; hypothetical protein 2306109 4661183 Sputw3181_1989 Shewanella sp. W3-18-1 hypothetical protein YP_963377.1 2305834 D 351745 CDS YP_963378.1 120598804 4661064 complement(2306190..2306741) 1 NC_008750.1 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2306741 4661064 Sputw3181_1990 Shewanella sp. W3-18-1 ecotin YP_963378.1 2306190 R 351745 CDS YP_963379.1 120598805 4660452 complement(2307733..2309112) 1 NC_008750.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: shm:Shewmr7_2025 MATE efflux family protein; MATE efflux family protein 2309112 4660452 Sputw3181_1991 Shewanella sp. W3-18-1 MATE efflux family protein YP_963379.1 2307733 R 351745 CDS YP_963380.1 120598806 4661178 2309147..2309776 1 NC_008750.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2309776 4661178 Sputw3181_1992 Shewanella sp. W3-18-1 riboflavin synthase subunit alpha YP_963380.1 2309147 D 351745 CDS YP_963381.1 120598807 4661155 complement(2309773..2309973) 1 NC_008750.1 KEGG: shm:Shewmr7_2023 hypothetical protein; hypothetical protein 2309973 4661155 Sputw3181_1993 Shewanella sp. W3-18-1 hypothetical protein YP_963381.1 2309773 R 351745 CDS YP_963382.1 120598808 4661148 2310374..2312302 1 NC_008750.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2312302 4661148 Sputw3181_1994 Shewanella sp. W3-18-1 threonyl-tRNA synthetase YP_963382.1 2310374 D 351745 CDS YP_963383.1 120598809 4661143 2312417..2312848 1 NC_008750.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2312848 infC 4661143 infC Shewanella sp. W3-18-1 translation initiation factor IF-3 YP_963383.1 2312417 D 351745 CDS YP_963384.1 120598810 4661097 2312878..2313126 1 NC_008750.1 PFAM: ribosomal protein L35; KEGG: sdn:Sden_1707 ribosomal protein L35; 50S ribosomal protein L35 2313126 rpmI 4661097 rpmI Shewanella sp. W3-18-1 50S ribosomal protein L35 YP_963384.1 2312878 D 351745 CDS YP_963385.1 120598811 4661098 2313143..2313499 1 NC_008750.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2313499 rplT 4661098 rplT Shewanella sp. W3-18-1 50S ribosomal protein L20 YP_963385.1 2313143 D 351745 CDS YP_963386.1 120598812 4661100 complement(2313749..2314702) 1 NC_008750.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO2303 thioredoxin reductase; thioredoxin reductase 2314702 4661100 Sputw3181_1998 Shewanella sp. W3-18-1 thioredoxin reductase YP_963386.1 2313749 R 351745 CDS YP_963387.1 120598813 4661066 complement(2314956..2316071) 1 NC_008750.1 TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: shm:Shewmr7_2015 alanine dehydrogenase; alanine dehydrogenase 2316071 4661066 Sputw3181_1999 Shewanella sp. W3-18-1 alanine dehydrogenase YP_963387.1 2314956 R 351745 CDS YP_963388.1 120598814 4658599 2316251..2316757 1 NC_008750.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 2316757 4658599 Sputw3181_2000 Shewanella sp. W3-18-1 leucine-responsive transcriptional regulator YP_963388.1 2316251 D 351745 CDS YP_963389.1 120598815 4661014 2317087..2319777 1 NC_008750.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: shm:Shewmr7_2013 cell divisionFtsK/SpoIIIE; cell division protein FtsK 2319777 4661014 Sputw3181_2001 Shewanella sp. W3-18-1 cell division protein FtsK YP_963389.1 2317087 D 351745 CDS YP_963390.1 120598816 4657759 2319854..2320480 1 NC_008750.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: shm:Shewmr7_2012 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 2320480 4657759 Sputw3181_2002 Shewanella sp. W3-18-1 outer membrane lipoprotein carrier protein LolA YP_963390.1 2319854 D 351745 CDS YP_963391.1 120598817 4658601 2320489..2321820 1 NC_008750.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: son:SO2308 ATPase, AAA family; recombination factor protein RarA 2321820 4658601 Sputw3181_2003 Shewanella sp. W3-18-1 recombination factor protein RarA YP_963391.1 2320489 D 351745 CDS YP_963392.1 120598818 4661024 2321813..2322187 1 NC_008750.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2322187 4661024 Sputw3181_2004 Shewanella sp. W3-18-1 camphor resistance protein CrcB YP_963392.1 2321813 D 351745 CDS YP_963393.1 120598819 4657758 2322206..2323492 1 NC_008750.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2323492 4657758 Sputw3181_2005 Shewanella sp. W3-18-1 seryl-tRNA synthetase YP_963393.1 2322206 D 351745 CDS YP_963394.1 120598820 4661862 2323510..2323632 1 NC_008750.1 KEGG: shm:Shewmr7_2008 hypothetical protein; hypothetical protein 2323632 4661862 Sputw3181_2006 Shewanella sp. W3-18-1 hypothetical protein YP_963394.1 2323510 D 351745 CDS YP_963395.1 120598821 4661857 complement(2323725..2324063) 1 NC_008750.1 PFAM: DsrC family protein; KEGG: she:Shewmr4_1969 DsrC family protein; DsrC family protein 2324063 4661857 Sputw3181_2007 Shewanella sp. W3-18-1 DsrC family protein YP_963395.1 2323725 R 351745 CDS YP_963396.1 120598822 4661848 complement(2324057..2324338) 1 NC_008750.1 PFAM: DsrH family protein; KEGG: son:SO2378 putative uncharacterized protein involved in oxidation of intracellular sulfur; DsrH family protein 2324338 4661848 Sputw3181_2008 Shewanella sp. W3-18-1 DsrH family protein YP_963396.1 2324057 R 351745 CDS YP_963397.1 120598823 4661851 complement(2324338..2324694) 1 NC_008750.1 PFAM: DsrE family protein; KEGG: shm:Shewmr7_2005 DsrE family protein; DsrE family protein 2324694 4661851 Sputw3181_2009 Shewanella sp. W3-18-1 DsrE family protein YP_963397.1 2324338 R 351745 CDS YP_963398.1 120598824 4661844 complement(2324709..2325098) 1 NC_008750.1 PFAM: DsrE family protein; KEGG: shm:Shewmr7_2004 DsrE family protein; DsrE family protein 2325098 4661844 Sputw3181_2010 Shewanella sp. W3-18-1 DsrE family protein YP_963398.1 2324709 R 351745 CDS YP_963399.1 120598825 4661803 complement(2325159..2325818) 1 NC_008750.1 PFAM: protein of unknown function UPF0005; KEGG: son:SO2375 membrane protein, putative; hypothetical protein 2325818 4661803 Sputw3181_2011 Shewanella sp. W3-18-1 hypothetical protein YP_963399.1 2325159 R 351745 CDS YP_963400.1 120598826 4661836 complement(2326057..2327046) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_1974 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator 2327046 4661836 Sputw3181_2012 Shewanella sp. W3-18-1 putative DNA-binding transcriptional regulator YP_963400.1 2326057 R 351745 CDS YP_963401.1 120598827 4661827 2327075..2328349 1 NC_008750.1 uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 2328349 4661827 Sputw3181_2013 Shewanella sp. W3-18-1 inner membrane transport protein YdhC YP_963401.1 2327075 D 351745 CDS YP_963402.1 120598828 4660515 2328746..2328994 1 NC_008750.1 hypothetical protein 2328994 4660515 Sputw3181_2014 Shewanella sp. W3-18-1 hypothetical protein YP_963402.1 2328746 D 351745 CDS YP_963403.1 120598829 4661805 complement(2331041..2331499) 1 NC_008750.1 KEGG: rpc:RPC_3570 sec-C metal-binding protein; sec-C metal-binding protein 2331499 4661805 Sputw3181_2017 Shewanella sp. W3-18-1 sec-C metal-binding protein YP_963403.1 2331041 R 351745 CDS YP_963404.1 120598830 4661813 complement(2331681..2331935) 1 NC_008750.1 KEGG: ppr:PBPRB_2026 hypothetical protein; hypothetical protein 2331935 4661813 Sputw3181_2018 Shewanella sp. W3-18-1 hypothetical protein YP_963404.1 2331681 R 351745 CDS YP_963405.1 120598831 4657690 complement(2332043..2332663) 1 NC_008750.1 KEGG: psb:Psyr_4515 hypothetical protein; hypothetical protein 2332663 4657690 Sputw3181_2019 Shewanella sp. W3-18-1 hypothetical protein YP_963405.1 2332043 R 351745 CDS YP_963406.1 120598832 4661797 complement(2333044..2336019) 1 NC_008750.1 PFAM: transposase Tn3 family protein; KEGG: pol:Bpro_2512 transposase Tn3; transposase Tn3 family protein 2336019 4661797 Sputw3181_2020 Shewanella sp. W3-18-1 transposase Tn3 family protein YP_963406.1 2333044 R 351745 CDS YP_963407.1 120598833 4661793 complement(2336162..2336842) 1 NC_008750.1 hypothetical protein 2336842 4661793 Sputw3181_2021 Shewanella sp. W3-18-1 hypothetical protein YP_963407.1 2336162 R 351745 CDS YP_963408.1 120598834 4661782 complement(2336904..2337449) 1 NC_008750.1 hypothetical protein 2337449 4661782 Sputw3181_2022 Shewanella sp. W3-18-1 hypothetical protein YP_963408.1 2336904 R 351745 CDS YP_963409.1 120598835 4661757 complement(2337459..2338709) 1 NC_008750.1 PFAM: phage integrase family protein; KEGG: xcv:XCV2438 cointegrate resolution protein S; phage integrase family protein 2338709 4661757 Sputw3181_2023 Shewanella sp. W3-18-1 phage integrase family protein YP_963409.1 2337459 R 351745 CDS YP_963410.1 120598836 4661736 complement(2338725..2339243) 1 NC_008750.1 KEGG: vch:VCA0487 hypothetical protein; hypothetical protein 2339243 4661736 Sputw3181_2024 Shewanella sp. W3-18-1 hypothetical protein YP_963410.1 2338725 R 351745 CDS YP_963411.1 120598837 4661714 complement(2339244..2339630) 1 NC_008750.1 KEGG: vch:VCA0486 hypothetical protein; hypothetical protein 2339630 4661714 Sputw3181_2025 Shewanella sp. W3-18-1 hypothetical protein YP_963411.1 2339244 R 351745 CDS YP_963412.1 120598838 4661707 2339787..2340959 1 NC_008750.1 KEGG: pol:Bpro_2488 cointegrate resolution protein T; cointegrate resolution protein T 2340959 4661707 Sputw3181_2026 Shewanella sp. W3-18-1 cointegrate resolution protein T YP_963412.1 2339787 D 351745 CDS YP_963413.1 120598839 4661699 2341366..2341851 1 NC_008750.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: mxa:MXAN_0073 thioesterase family domain protein; hypothetical protein 2341851 4661699 Sputw3181_2027 Shewanella sp. W3-18-1 hypothetical protein YP_963413.1 2341366 D 351745 CDS YP_963414.1 120598840 4661690 2341848..2342339 1 NC_008750.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: sfr:Sfri_1524 thioesterase superfamily protein; hypothetical protein 2342339 4661690 Sputw3181_2028 Shewanella sp. W3-18-1 hypothetical protein YP_963414.1 2341848 D 351745 CDS YP_963415.1 120598841 4661693 complement(2342515..2343597) 1 NC_008750.1 PFAM: aldo/keto reductase; KEGG: rsp:RSP_3201 putative oxidoreductase; aldo/keto reductase 2343597 4661693 Sputw3181_2029 Shewanella sp. W3-18-1 aldo/keto reductase YP_963415.1 2342515 R 351745 CDS YP_963416.1 120598842 4661676 complement(2343673..2344257) 1 NC_008750.1 PFAM: regulatory protein, TetR; KEGG: ret:RHE_CH02697 probable transcriptional regulator protein, TetR family; TetR family transcriptional regulator 2344257 4661676 Sputw3181_2030 Shewanella sp. W3-18-1 TetR family transcriptional regulator YP_963416.1 2343673 R 351745 CDS YP_963417.1 120598843 4661673 complement(2344302..2344970) 1 NC_008750.1 KEGG: jan:Jann_4157 anti-sigma factor, ChrR; anti-ECF sigma factor ChrR 2344970 4661673 Sputw3181_2031 Shewanella sp. W3-18-1 anti-ECF sigma factor ChrR YP_963417.1 2344302 R 351745 CDS YP_963418.1 120598844 4661671 complement(2345018..2345638) 1 NC_008750.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: pat:Patl_4128 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 2345638 4661671 Sputw3181_2032 Shewanella sp. W3-18-1 glutathione S-transferase domain-containing protein YP_963418.1 2345018 R 351745 CDS YP_963419.1 120598845 4661660 2345888..2346439 1 NC_008750.1 KEGG: ilo:IL1253 hypothetical protein; hypothetical protein 2346439 4661660 Sputw3181_2033 Shewanella sp. W3-18-1 hypothetical protein YP_963419.1 2345888 D 351745 CDS YP_963420.1 120598846 4661648 2346735..2347091 1 NC_008750.1 hypothetical protein 2347091 4661648 Sputw3181_2034 Shewanella sp. W3-18-1 hypothetical protein YP_963420.1 2346735 D 351745 CDS YP_963421.1 120598847 4660597 complement(2348965..2349402) 1 NC_008750.1 KEGG: sfr:Sfri_3147 transposase, IS4 family protein; transposase, IS4 family protein 2349402 4660597 Sputw3181_2037 Shewanella sp. W3-18-1 transposase, IS4 family protein YP_963421.1 2348965 R 351745 CDS YP_963422.1 120598848 4661633 2349978..2350727 1 NC_008750.1 PFAM: Integrase, catalytic region; KEGG: vpa:VP1787 putative transposase; integrase catalytic subunit 2350727 4661633 Sputw3181_2038 Shewanella sp. W3-18-1 integrase catalytic subunit YP_963422.1 2349978 D 351745 CDS YP_963423.1 120598849 4661635 2350983..2351744 1 NC_008750.1 PFAM: transposase, IS4 family protein; KEGG: lpn:lpg1315 transposase; transposase, IS4 family protein 2351744 4661635 Sputw3181_2039 Shewanella sp. W3-18-1 transposase, IS4 family protein YP_963423.1 2350983 D 351745 CDS YP_963424.1 120598850 4661623 2351876..2353504 1 NC_008750.1 PFAM: chemotaxis sensory transducer; KEGG: ilo:IL1068 methyl-accepting chemotaxis protein with ligand-binding sensor domain and HAMP domain; methyl-accepting chemotaxis sensory transducer 2353504 4661623 Sputw3181_2040 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_963424.1 2351876 D 351745 CDS YP_963425.1 120598851 4661634 complement(2353609..2354196) 1 NC_008750.1 PFAM: regulatory protein, TetR; KEGG: ret:RHE_CH00601 probable transcriptional regulator protein, TetR family; TetR family transcriptional regulator 2354196 4661634 Sputw3181_2041 Shewanella sp. W3-18-1 TetR family transcriptional regulator YP_963425.1 2353609 R 351745 CDS YP_963426.1 120598852 4661630 2354387..2354776 1 NC_008750.1 PFAM: Endoribonuclease L-PSP; KEGG: atc:AGR_C_2721 hypothetical protein; endoribonuclease L-PSP 2354776 4661630 Sputw3181_2042 Shewanella sp. W3-18-1 endoribonuclease L-PSP YP_963426.1 2354387 D 351745 CDS YP_963427.1 120598853 4661611 2354913..2355674 1 NC_008750.1 PFAM: transposase, IS4 family protein; KEGG: lpn:lpg1315 transposase; transposase, IS4 family protein 2355674 4661611 Sputw3181_2043 Shewanella sp. W3-18-1 transposase, IS4 family protein YP_963427.1 2354913 D 351745 CDS YP_963428.1 120598854 4660605 complement(2356043..2356531) 1 NC_008750.1 KEGG: son:SO2365 hypothetical protein; hypothetical protein 2356531 4660605 Sputw3181_2045 Shewanella sp. W3-18-1 hypothetical protein YP_963428.1 2356043 R 351745 CDS YP_963429.1 120598855 4661597 2356755..2358191 1 NC_008750.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2358191 4661597 Sputw3181_2046 Shewanella sp. W3-18-1 cbb3-type cytochrome c oxidase subunit I YP_963429.1 2356755 D 351745 CDS YP_963430.1 120598856 4661585 2358204..2358830 1 NC_008750.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2358830 4661585 Sputw3181_2047 Shewanella sp. W3-18-1 cbb3-type cytochrome c oxidase subunit II YP_963430.1 2358204 D 351745 CDS YP_963431.1 120598857 4661534 2358842..2359018 1 NC_008750.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: shm:Shewmr7_1967 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit 2359018 4661534 Sputw3181_2048 Shewanella sp. W3-18-1 cbb3-type cytochrome oxidase subunit YP_963431.1 2358842 D 351745 CDS YP_963432.1 120598858 4661518 2359018..2359986 1 NC_008750.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: shm:Shewmr7_1966 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 2359986 4661518 Sputw3181_2049 Shewanella sp. W3-18-1 cytochrome c oxidase, cbb3-type subunit III YP_963432.1 2359018 D 351745 CDS YP_963433.1 120598859 4661484 2360095..2360574 1 NC_008750.1 KEGG: son:SO2360 hypothetical protein; hypothetical protein 2360574 4661484 Sputw3181_2050 Shewanella sp. W3-18-1 hypothetical protein YP_963433.1 2360095 D 351745 CDS YP_963434.1 120598860 4661500 2360597..2362996 1 NC_008750.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: she:Shewmr4_2011 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 2362996 4661500 Sputw3181_2051 Shewanella sp. W3-18-1 heavy metal translocating P-type ATPase YP_963434.1 2360597 D 351745 CDS YP_963435.1 120598861 4661501 2363036..2363284 1 NC_008750.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: shm:Shewmr7_1963 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein 2363284 4661501 Sputw3181_2052 Shewanella sp. W3-18-1 cbb3-type cytochrome oxidase maturation protein YP_963435.1 2363036 D 351745 CDS YP_963436.1 120598862 4661435 2363281..2363973 1 NC_008750.1 KEGG: son:SO2357 hypothetical protein; hypothetical protein 2363973 4661435 Sputw3181_2053 Shewanella sp. W3-18-1 hypothetical protein YP_963436.1 2363281 D 351745 CDS YP_963437.1 120598863 4661455 2364029..2364781 1 NC_008750.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2364781 4661455 Sputw3181_2054 Shewanella sp. W3-18-1 fumarate/nitrate reduction transcriptional regulator YP_963437.1 2364029 D 351745 CDS YP_963438.1 120598864 4661456 2364957..2365889 1 NC_008750.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2365889 4661456 Sputw3181_2055 Shewanella sp. W3-18-1 universal stress protein UspE YP_963438.1 2364957 D 351745 CDS YP_963439.1 120598865 4661450 2365978..2366910 1 NC_008750.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2366910 4661450 Sputw3181_2056 Shewanella sp. W3-18-1 C32 tRNA thiolase YP_963439.1 2365978 D 351745 CDS YP_963440.1 120598866 4661439 complement(2366997..2367626) 1 NC_008750.1 KEGG: son:SO2353 hypothetical protein; hypothetical protein 2367626 4661439 Sputw3181_2057 Shewanella sp. W3-18-1 hypothetical protein YP_963440.1 2366997 R 351745 CDS YP_963441.1 120598867 4661432 complement(2367613..2368425) 1 NC_008750.1 KEGG: she:Shewmr4_2018 bax protein, putative; bax protein 2368425 4661432 Sputw3181_2058 Shewanella sp. W3-18-1 bax protein YP_963441.1 2367613 R 351745 CDS YP_963442.1 120598868 4661422 2368756..2369679 1 NC_008750.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: shm:Shewmr7_1956 hypothetical protein; hypothetical protein 2369679 4661422 Sputw3181_2059 Shewanella sp. W3-18-1 hypothetical protein YP_963442.1 2368756 D 351745 CDS YP_963443.1 120598869 4661392 complement(2369739..2370932) 1 NC_008750.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2370932 4661392 Sputw3181_2060 Shewanella sp. W3-18-1 aromatic amino acid aminotransferase YP_963443.1 2369739 R 351745 CDS YP_963444.1 120598870 4661404 complement(2371235..2371516) 1 NC_008750.1 PFAM: protein of unknown function DUF1315; KEGG: son:SO2422 hypothetical protein; hypothetical protein 2371516 4661404 Sputw3181_2061 Shewanella sp. W3-18-1 hypothetical protein YP_963444.1 2371235 R 351745 CDS YP_963445.1 120598871 4661201 complement(2371513..2371830) 1 NC_008750.1 KEGG: shm:Shewmr7_2072 hypothetical protein; hypothetical protein 2371830 4661201 Sputw3181_2062 Shewanella sp. W3-18-1 hypothetical protein YP_963445.1 2371513 R 351745 CDS YP_963446.1 120598872 4661375 complement(2371842..2372969) 1 NC_008750.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: shm:Shewmr7_2073 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 2372969 4661375 Sputw3181_2063 Shewanella sp. W3-18-1 peptidase M14, carboxypeptidase A YP_963446.1 2371842 R 351745 CDS YP_963447.1 120598873 4661377 complement(2373165..2373875) 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2426 DNA-binding response regulator; two component transcriptional regulator 2373875 4661377 Sputw3181_2064 Shewanella sp. W3-18-1 two component transcriptional regulator YP_963447.1 2373165 R 351745 CDS YP_963448.1 120598874 4660616 complement(2374400..2375449) 1 NC_008750.1 PFAM: Integrase, catalytic region; KEGG: sdn:Sden_2168 integrase, catalytic region; integrase catalytic subunit 2375449 4660616 Sputw3181_2066 Shewanella sp. W3-18-1 integrase catalytic subunit YP_963448.1 2374400 R 351745 CDS YP_963449.1 120598875 4661379 complement(2375455..2375955) 1 NC_008750.1 PFAM: transposase IS3/IS911 family protein; KEGG: sdn:Sden_2169 hypothetical protein; transposase IS3/IS911 family protein 2375955 4661379 Sputw3181_2067 Shewanella sp. W3-18-1 transposase IS3/IS911 family protein YP_963449.1 2375455 R 351745 CDS YP_963450.1 120598876 4661355 complement(2375983..2378235) 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_1903 TonB-dependent receptor; TonB-dependent receptor, plug 2378235 4661355 Sputw3181_2068 Shewanella sp. W3-18-1 TonB-dependent receptor, plug YP_963450.1 2375983 R 351745 CDS YP_963451.1 120598877 4659816 complement(2379176..2380180) 1 NC_008750.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2380180 ruvB 4659816 ruvB Shewanella sp. W3-18-1 Holliday junction DNA helicase RuvB YP_963451.1 2379176 R 351745 CDS YP_963452.1 120598878 4661342 complement(2380195..2380812) 1 NC_008750.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2380812 ruvA 4661342 ruvA Shewanella sp. W3-18-1 Holliday junction DNA helicase RuvA YP_963452.1 2380195 R 351745 CDS YP_963453.1 120598879 4661321 complement(2380809..2381330) 1 NC_008750.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2381330 ruvC 4661321 ruvC Shewanella sp. W3-18-1 Holliday junction resolvase YP_963453.1 2380809 R 351745 CDS YP_963454.1 120598880 4661062 complement(2381434..2382180) 1 NC_008750.1 PFAM: protein of unknown function DUF28; KEGG: shm:Shewmr7_2079 protein of unknown function DUF28; hypothetical protein 2382180 4661062 Sputw3181_2072 Shewanella sp. W3-18-1 hypothetical protein YP_963454.1 2381434 R 351745 CDS YP_963455.1 120598881 4661311 complement(2382420..2384198) 1 NC_008750.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2384198 aspS 4661311 aspS Shewanella sp. W3-18-1 aspartyl-tRNA synthetase YP_963455.1 2382420 R 351745 CDS YP_963456.1 120598882 4661307 complement(2384383..2387196) 1 NC_008750.1 KEGG: she:Shewmr4_1897 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3; diguanylate cyclase 2387196 4661307 Sputw3181_2074 Shewanella sp. W3-18-1 diguanylate cyclase YP_963456.1 2384383 R 351745 CDS YP_963457.1 120598883 4661295 2387346..2388077 1 NC_008750.1 TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_1896 putative methyltransferase; putative methyltransferase 2388077 4661295 Sputw3181_2075 Shewanella sp. W3-18-1 putative methyltransferase YP_963457.1 2387346 D 351745 CDS YP_963458.1 120598884 4661290 2388074..2389072 1 NC_008750.1 TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_2083 putative methyltransferase; putative methyltransferase 2389072 4661290 Sputw3181_2076 Shewanella sp. W3-18-1 putative methyltransferase YP_963458.1 2388074 D 351745 CDS YP_963459.1 120598885 4661284 2389065..2390816 1 NC_008750.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: shm:Shewmr7_2087 hypothetical protein; peptidase M3A and M3B, thimet/oligopeptidase F 2390816 4661284 Sputw3181_2077 Shewanella sp. W3-18-1 peptidase M3A and M3B, thimet/oligopeptidase F YP_963459.1 2389065 D 351745 CDS YP_963460.1 120598886 4661275 2390923..2391834 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2438 transcriptional regulator, LysR family; LysR family transcriptional regulator 2391834 4661275 Sputw3181_2078 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_963460.1 2390923 D 351745 CDS YP_963461.1 120598887 4661281 complement(2391879..2393681) 1 NC_008750.1 KEGG: shm:Shewmr7_2090 SrpA-related protein; SrpA-like protein 2393681 4661281 Sputw3181_2079 Shewanella sp. W3-18-1 SrpA-like protein YP_963461.1 2391879 R 351745 CDS YP_963462.1 120598888 4661179 complement(2393687..2393950) 1 NC_008750.1 KEGG: son:SO2439.2 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 2393950 4661179 Sputw3181_2080 Shewanella sp. W3-18-1 methyl-accepting chemotaxis protein YP_963462.1 2393687 R 351745 CDS YP_963463.1 120598889 4661270 complement(2394052..2395167) 1 NC_008750.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2395167 thiH 4661270 thiH Shewanella sp. W3-18-1 thiamine biosynthesis protein ThiH YP_963463.1 2394052 R 351745 CDS YP_963464.1 120598890 4661256 complement(2395164..2395928) 1 NC_008750.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2395928 thiG 4661256 thiG Shewanella sp. W3-18-1 thiazole synthase YP_963464.1 2395164 R 351745 CDS YP_963465.1 120598891 4661248 complement(2395930..2396145) 1 NC_008750.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: son:SO2442 thiS protein, putative; thiamine biosynthesis protein ThiS 2396145 4661248 Sputw3181_2083 Shewanella sp. W3-18-1 thiamine biosynthesis protein ThiS YP_963465.1 2395930 R 351745 CDS YP_963466.1 120598892 4661115 complement(2396135..2397055) 1 NC_008750.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: she:Shewmr4_1883 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 2397055 4661115 Sputw3181_2084 Shewanella sp. W3-18-1 UBA/THIF-type NAD/FAD binding protein YP_963466.1 2396135 R 351745 CDS YP_963467.1 120598893 4661217 complement(2397030..2398904) 1 NC_008750.1 KEGG: shm:Shewmr7_2096 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; thiamine-phosphate pyrophosphorylase 2398904 4661217 Sputw3181_2085 Shewanella sp. W3-18-1 thiamine-phosphate pyrophosphorylase YP_963467.1 2397030 R 351745 CDS YP_963468.1 120598894 4661206 complement(2398937..2401057) 1 NC_008750.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2401057 4661206 Sputw3181_2086 Shewanella sp. W3-18-1 thiamine biosynthesis protein ThiC YP_963468.1 2398937 R 351745 CDS YP_963469.1 120598895 4661209 complement(2401524..2402585) 1 NC_008750.1 KEGG: son:SO2446 hypothetical protein; hypothetical protein 2402585 4661209 Sputw3181_2087 Shewanella sp. W3-18-1 hypothetical protein YP_963469.1 2401524 R 351745 CDS YP_963470.1 120598896 4661145 2402963..2403646 1 NC_008750.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: she:Shewmr4_1879 channel protein, hemolysin III family; hemolysin III family channel protein 2403646 4661145 Sputw3181_2088 Shewanella sp. W3-18-1 hemolysin III family channel protein YP_963470.1 2402963 D 351745 CDS YP_963471.1 120598897 4660780 complement(2403697..2404191) 1 NC_008750.1 PFAM: DTW domain containing protein; KEGG: sfr:Sfri_1306 DTW domain containing protein; DTW domain-containing protein 2404191 4660780 Sputw3181_2089 Shewanella sp. W3-18-1 DTW domain-containing protein YP_963471.1 2403697 R 351745 CDS YP_963472.1 120598898 4660700 complement(2404247..2404780) 1 NC_008750.1 PFAM: NUDIX hydrolase; KEGG: son:SO2448 MutT/nudix family protein; NUDIX hydrolase 2404780 4660700 Sputw3181_2090 Shewanella sp. W3-18-1 NUDIX hydrolase YP_963472.1 2404247 R 351745 CDS YP_963473.1 120598899 4661157 complement(2404901..2407987) 1 NC_008750.1 KEGG: cvi:CV2953 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2407987 4661157 Sputw3181_2091 Shewanella sp. W3-18-1 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_963473.1 2404901 R 351745 CDS YP_963474.1 120598900 4660660 complement(2408242..2408979) 1 NC_008750.1 KEGG: son:SO2449 hypothetical protein; hypothetical protein 2408979 4660660 Sputw3181_2092 Shewanella sp. W3-18-1 hypothetical protein YP_963474.1 2408242 R 351745 CDS YP_963475.1 120598901 4661472 2409296..2410165 1 NC_008750.1 PFAM: UspA domain protein; KEGG: sfr:Sfri_2734 hypothetical protein; UspA domain-containing protein 2410165 4661472 Sputw3181_2093 Shewanella sp. W3-18-1 UspA domain-containing protein YP_963475.1 2409296 D 351745 CDS YP_963476.1 120598902 4660388 2410410..2411306 1 NC_008750.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: she:Shewmr4_1875 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein 2411306 4660388 Sputw3181_2094 Shewanella sp. W3-18-1 helix-turn-helix domain-containing protein YP_963476.1 2410410 D 351745 CDS YP_963477.1 120598903 4660641 2411344..2411793 1 NC_008750.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: shm:Shewmr7_2104 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase 2411793 4660641 Sputw3181_2095 Shewanella sp. W3-18-1 alkylhydroperoxidase YP_963477.1 2411344 D 351745 CDS YP_963478.1 120598904 4660899 complement(2411862..2412869) 1 NC_008750.1 KEGG: shm:Shewmr7_2105 hypothetical protein; hypothetical protein 2412869 4660899 Sputw3181_2096 Shewanella sp. W3-18-1 hypothetical protein YP_963478.1 2411862 R 351745 CDS YP_963479.1 120598905 4660387 complement(2413440..2413733) 1 NC_008750.1 PFAM: YCII-related protein; KEGG: son:SO2457 hypothetical protein; hypothetical protein 2413733 4660387 Sputw3181_2097 Shewanella sp. W3-18-1 hypothetical protein YP_963479.1 2413440 R 351745 CDS YP_963480.1 120598906 4660381 complement(2413787..2414587) 1 NC_008750.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: shm:Shewmr7_2110 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein 2414587 4660381 Sputw3181_2098 Shewanella sp. W3-18-1 helix-turn-helix domain-containing protein YP_963480.1 2413787 R 351745 CDS YP_963481.1 120598907 4660612 2414668..2416059 1 NC_008750.1 PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: shm:Shewmr7_2111 sodium/sulphate symporter; sodium/sulfate symporter 2416059 4660612 Sputw3181_2099 Shewanella sp. W3-18-1 sodium/sulfate symporter YP_963481.1 2414668 D 351745 CDS YP_963482.1 120598908 4660578 complement(2416178..2417338) 1 NC_008750.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: cps:CPS_2133 hypothetical protein; cupin 4 family protein 2417338 4660578 Sputw3181_2100 Shewanella sp. W3-18-1 cupin 4 family protein YP_963482.1 2416178 R 351745 CDS YP_963483.1 120598909 4660573 complement(2417426..2417776) 1 NC_008750.1 KEGG: son:SO2234 hypothetical protein; hypothetical protein 2417776 4660573 Sputw3181_2101 Shewanella sp. W3-18-1 hypothetical protein YP_963483.1 2417426 R 351745 CDS YP_963484.1 120598910 4660908 complement(2417773..2418153) 1 NC_008750.1 KEGG: rba:RB11509 hypothetical protein; hypothetical protein 2418153 4660908 Sputw3181_2102 Shewanella sp. W3-18-1 hypothetical protein YP_963484.1 2417773 R 351745 CDS YP_963485.1 120598911 4660907 complement(2418298..2418885) 1 NC_008750.1 TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: shm:Shewmr7_2133 periplasmic nitrate (or nitrite) reductase C-type cytochrome, NapC/NirT family; NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome 2418885 4660907 Sputw3181_2103 Shewanella sp. W3-18-1 NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome YP_963485.1 2418298 R 351745 CDS YP_963486.1 120598912 4660329 complement(2418894..2419379) 1 NC_008750.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: she:Shewmr4_1843 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit 2419379 4660329 Sputw3181_2104 Shewanella sp. W3-18-1 nitrate reductase cytochrome c-type subunit YP_963486.1 2418894 R 351745 CDS YP_963487.1 120598913 4660326 complement(2419390..2421879) 1 NC_008750.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 2421879 4660326 Sputw3181_2105 Shewanella sp. W3-18-1 nitrate reductase catalytic subunit YP_963487.1 2419390 R 351745 CDS YP_963488.1 120598914 4659813 complement(2421882..2422139) 1 NC_008750.1 PFAM: NapD family protein; KEGG: shm:Shewmr7_2136 NapD family protein; NapD family protein 2422139 4659813 Sputw3181_2106 Shewanella sp. W3-18-1 NapD family protein YP_963488.1 2421882 R 351745 CDS YP_963489.1 120598915 4660231 complement(2422183..2422341) 1 NC_008750.1 PFAM: periplasmic nitrate reductase NapE; KEGG: shm:Shewmr7_2137 periplasmic nitrate reductase NapE; periplasmic nitrate reductase NapE 2422341 4660231 Sputw3181_2107 Shewanella sp. W3-18-1 periplasmic nitrate reductase NapE YP_963489.1 2422183 R 351745 CDS YP_963490.1 120598916 4660306 complement(2422865..2426746) 1 NC_008750.1 KEGG: shm:Shewmr7_2138 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like; ATP-dependent helicase HrpA 2426746 4660306 Sputw3181_2108 Shewanella sp. W3-18-1 ATP-dependent helicase HrpA YP_963490.1 2422865 R 351745 CDS YP_963491.1 120598917 4660924 complement(2426841..2427257) 1 NC_008750.1 PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_2139 putative signal transduction protein with CBS domains; signal transduction protein 2427257 4660924 Sputw3181_2109 Shewanella sp. W3-18-1 signal transduction protein YP_963491.1 2426841 R 351745 CDS YP_963492.1 120598918 4660209 complement(2427380..2428411) 1 NC_008750.1 PFAM: peptidase T2, asparaginase 2; KEGG: shm:Shewmr7_2140 peptidase T2, asparaginase 2; peptidase T2, asparaginase 2 2428411 4660209 Sputw3181_2110 Shewanella sp. W3-18-1 peptidase T2, asparaginase 2 YP_963492.1 2427380 R 351745 CDS YP_963493.1 120598919 4660291 2428520..2430385 1 NC_008750.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO2114 hypothetical protein; surface antigen (D15) 2430385 4660291 Sputw3181_2111 Shewanella sp. W3-18-1 surface antigen (D15) YP_963493.1 2428520 D 351745 CDS YP_963494.1 120598920 4660440 2430382..2434299 1 NC_008750.1 PFAM: protein of unknown function DUF490; KEGG: she:Shewmr4_1835 protein of unknown function DUF490; hypothetical protein 2434299 4660440 Sputw3181_2112 Shewanella sp. W3-18-1 hypothetical protein YP_963494.1 2430382 D 351745 CDS YP_963495.1 120598921 4660430 complement(2434439..2434726) 1 NC_008750.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2434726 4660430 Sputw3181_2113 Shewanella sp. W3-18-1 50S ribosomal protein L25 YP_963495.1 2434439 R 351745 CDS YP_963496.1 120598922 4661163 2435016..2435462 1 NC_008750.1 KEGG: son:SO2111 hypothetical protein; hypothetical protein 2435462 4661163 Sputw3181_2114 Shewanella sp. W3-18-1 hypothetical protein YP_963496.1 2435016 D 351745 CDS YP_963497.1 120598923 4659836 complement(2435413..2435961) 1 NC_008750.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: son:SO2110 hypothetical protein; hypothetical protein 2435961 4659836 Sputw3181_2115 Shewanella sp. W3-18-1 hypothetical protein YP_963497.1 2435413 R 351745 CDS YP_963498.1 120598924 4661004 complement(2436085..2437539) 1 NC_008750.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO2109 hypothetical protein; peptidoglycan binding domain-containing protein 2437539 4661004 Sputw3181_2116 Shewanella sp. W3-18-1 peptidoglycan binding domain-containing protein YP_963498.1 2436085 R 351745 CDS YP_963499.1 120598925 4660844 complement(2438651..2440084) 1 NC_008750.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 2440084 4660844 Sputw3181_2117 Shewanella sp. W3-18-1 glyceraldehyde-3-phosphate dehydrogenase YP_963499.1 2438651 R 351745 CDS YP_963500.1 120598926 4660027 2440330..2441175 1 NC_008750.1 KEGG: she:Shewmr4_2022 hypothetical protein; hypothetical protein 2441175 4660027 Sputw3181_2118 Shewanella sp. W3-18-1 hypothetical protein YP_963500.1 2440330 D 351745 CDS YP_963501.1 120598927 4661181 2441382..2442392 1 NC_008750.1 KEGG: son:SO2345 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 2442392 4661181 Sputw3181_2119 Shewanella sp. W3-18-1 glyceraldehyde-3-phosphate dehydrogenase, type I YP_963501.1 2441382 D 351745 CDS YP_963502.1 120598928 4660999 complement(2442551..2443633) 1 NC_008750.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2443633 4660999 Sputw3181_2120 Shewanella sp. W3-18-1 quinolinate synthetase YP_963502.1 2442551 R 351745 CDS YP_963503.1 120598929 4659777 complement(2443766..2445376) 1 NC_008750.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: shm:Shewmr7_1949 catalytic domain of components of various dehydrogenase complexes; dihydrolipoamide acetyltransferase 2445376 4659777 Sputw3181_2121 Shewanella sp. W3-18-1 dihydrolipoamide acetyltransferase YP_963503.1 2443766 R 351745 CDS YP_963504.1 120598930 4659916 complement(2445386..2446363) 1 NC_008750.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: shm:Shewmr7_1948 transketolase, central region; transketolase, central region 2446363 4659916 Sputw3181_2122 Shewanella sp. W3-18-1 transketolase, central region YP_963504.1 2445386 R 351745 CDS YP_963505.1 120598931 4661542 complement(2446367..2447545) 1 NC_008750.1 PFAM: dehydrogenase, E1 component; KEGG: shm:Shewmr7_1947 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); 3-methyl-2-oxobutanoate dehydrogenase 2447545 4661542 Sputw3181_2123 Shewanella sp. W3-18-1 3-methyl-2-oxobutanoate dehydrogenase YP_963505.1 2446367 R 351745 CDS YP_963506.1 120598932 4659622 complement(2447708..2448742) 1 NC_008750.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 2448742 4659622 Sputw3181_2124 Shewanella sp. W3-18-1 succinylglutamate desuccinylase YP_963506.1 2447708 R 351745 CDS YP_963507.1 120598933 4659692 2449039..2449518 1 NC_008750.1 KEGG: shm:Shewmr7_1945 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 2449518 4659692 Sputw3181_2125 Shewanella sp. W3-18-1 peptide methionine sulfoxide reductase YP_963507.1 2449039 D 351745 CDS YP_963508.1 120598934 4659850 complement(2449602..2451254) 1 NC_008750.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2451254 4659850 Sputw3181_2126 Shewanella sp. W3-18-1 phosphoglucomutase YP_963508.1 2449602 R 351745 CDS YP_963509.1 120598935 4660984 complement(2451301..2451858) 1 NC_008750.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 2451858 4660984 Sputw3181_2127 Shewanella sp. W3-18-1 replication initiation regulator SeqA YP_963509.1 2451301 R 351745 CDS YP_963510.1 120598936 4660988 2452140..2452916 1 NC_008750.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: shm:Shewmr7_1942 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 2452916 4660988 Sputw3181_2128 Shewanella sp. W3-18-1 alpha/beta hydrolase fold domain-containing protein YP_963510.1 2452140 D 351745 CDS YP_963511.1 120598937 4660966 2453018..2453239 1 NC_008750.1 KEGG: shm:Shewmr7_1941 hypothetical protein; hypothetical protein 2453239 4660966 Sputw3181_2129 Shewanella sp. W3-18-1 hypothetical protein YP_963511.1 2453018 D 351745 CDS YP_963512.1 120598938 4659422 2453251..2453523 1 NC_008750.1 KEGG: shm:Shewmr7_1940 CopG domain protein DNA-binding domain protein; LexA regulated protein 2453523 4659422 Sputw3181_2130 Shewanella sp. W3-18-1 LexA regulated protein YP_963512.1 2453251 D 351745 CDS YP_963513.1 120598939 4660929 2453580..2454107 1 NC_008750.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 2454107 4660929 Sputw3181_2131 Shewanella sp. W3-18-1 flavodoxin FldA YP_963513.1 2453580 D 351745 CDS YP_963514.1 120598940 4660928 2454217..2455395 1 NC_008750.1 KEGG: shm:Shewmr7_1938 hypothetical protein; hypothetical protein 2455395 4660928 Sputw3181_2132 Shewanella sp. W3-18-1 hypothetical protein YP_963514.1 2454217 D 351745 CDS YP_963515.1 120598941 4659373 2455440..2456000 1 NC_008750.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2456000 4659373 Sputw3181_2133 Shewanella sp. W3-18-1 elongation factor P YP_963515.1 2455440 D 351745 CDS YP_963516.1 120598942 4660997 complement(2456172..2456993) 1 NC_008750.1 KEGG: she:Shewmr4_1801 hypothetical protein; hypothetical protein 2456993 4660997 Sputw3181_2134 Shewanella sp. W3-18-1 hypothetical protein YP_963516.1 2456172 R 351745 CDS YP_963517.1 120598943 4659122 complement(2457208..2458590) 1 NC_008750.1 PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_1936 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 2458590 4659122 Sputw3181_2135 Shewanella sp. W3-18-1 Na+/H+ antiporter NhaC YP_963517.1 2457208 R 351745 CDS YP_963518.1 120598944 4661873 2459376..2460590 1 NC_008750.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2460590 4661873 Sputw3181_2136 Shewanella sp. W3-18-1 aminotransferase AlaT YP_963518.1 2459376 D 351745 CDS YP_963519.1 120598945 4660970 2460873..2461460 1 NC_008750.1 KEGG: shm:Shewmr7_1934 metal dependent phosphohydrolase; hypothetical protein 2461460 4660970 Sputw3181_2137 Shewanella sp. W3-18-1 hypothetical protein YP_963519.1 2460873 D 351745 CDS YP_963520.1 120598946 4661567 2461486..2462835 1 NC_008750.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2462835 4661567 Sputw3181_2138 Shewanella sp. W3-18-1 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_963520.1 2461486 D 351745 CDS YP_963521.1 120598947 4661188 complement(2463025..2463708) 1 NC_008750.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 2463708 4661188 Sputw3181_2139 Shewanella sp. W3-18-1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_963521.1 2463025 R 351745 CDS YP_963522.1 120598948 4659279 complement(2463686..2465527) 1 NC_008750.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2465527 4659279 Sputw3181_2140 Shewanella sp. W3-18-1 phosphogluconate dehydratase YP_963522.1 2463686 R 351745 CDS YP_963523.1 120598949 4661094 complement(2465537..2466235) 1 NC_008750.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: son:SO2488 6-phosphogluconolactonase; 6-phosphogluconolactonase 2466235 4661094 Sputw3181_2141 Shewanella sp. W3-18-1 6-phosphogluconolactonase YP_963523.1 2465537 R 351745 CDS YP_963524.1 120598950 4661000 complement(2466245..2467717) 1 NC_008750.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2467717 4661000 Sputw3181_2142 Shewanella sp. W3-18-1 glucose-6-phosphate 1-dehydrogenase YP_963524.1 2466245 R 351745 CDS YP_963525.1 120598951 4659250 2468028..2468882 1 NC_008750.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2468882 4659250 Sputw3181_2143 Shewanella sp. W3-18-1 DNA-binding transcriptional regulator HexR YP_963525.1 2468028 D 351745 CDS YP_963526.1 120598952 4659068 2469067..2470506 1 NC_008750.1 PFAM: pyruvate kinase; KEGG: shm:Shewmr7_1927 pyruvate kinase; pyruvate kinase 2470506 4659068 Sputw3181_2144 Shewanella sp. W3-18-1 pyruvate kinase YP_963526.1 2469067 D 351745 CDS YP_963527.1 120598953 4661475 2470674..2472047 1 NC_008750.1 PFAM: transposase Tn5, dimerisation domain protein; KEGG: ppr:PBPRB0910 hypothetical transposase; transposase Tn5 dimerisation subunit 2472047 4661475 Sputw3181_2145 Shewanella sp. W3-18-1 transposase Tn5 dimerisation subunit YP_963527.1 2470674 D 351745 CDS YP_963528.1 120598954 4659242 complement(2472167..2474446) 1 NC_008750.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2474446 4659242 Sputw3181_2146 Shewanella sp. W3-18-1 acyl-CoA dehydrogenase YP_963528.1 2472167 R 351745 CDS YP_963529.1 120598955 4659223 complement(2474459..2475100) 1 NC_008750.1 PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_1925 transcriptional regulator, TetR family; TetR family transcriptional regulator 2475100 4659223 Sputw3181_2147 Shewanella sp. W3-18-1 TetR family transcriptional regulator YP_963529.1 2474459 R 351745 CDS YP_963530.1 120598956 4659195 complement(2475377..2475967) 1 NC_008750.1 PFAM: Smr protein/MutS2; KEGG: she:Shewmr4_2052 Smr protein/MutS2; Smr protein/MutS2 2475967 4659195 Sputw3181_2148 Shewanella sp. W3-18-1 Smr protein/MutS2 YP_963530.1 2475377 R 351745 CDS YP_963531.1 120598957 4658868 2476102..2476686 1 NC_008750.1 KEGG: she:Shewmr4_2053 hypothetical protein; hypothetical protein 2476686 4658868 Sputw3181_2149 Shewanella sp. W3-18-1 hypothetical protein YP_963531.1 2476102 D 351745 CDS YP_963532.1 120598958 4658864 2476715..2477206 1 NC_008750.1 PFAM: SEC-C motif domain protein; KEGG: shm:Shewmr7_1921 sec-C motif domain protein; SecC motif-containing protein 2477206 4658864 Sputw3181_2150 Shewanella sp. W3-18-1 SecC motif-containing protein YP_963532.1 2476715 D 351745 CDS YP_963533.1 120598959 4658614 complement(2477297..2479480) 1 NC_008750.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold domain protein; KEGG: she:Shewmr4_2055 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2479480 4658614 Sputw3181_2151 Shewanella sp. W3-18-1 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_963533.1 2477297 R 351745 CDS YP_963534.1 120598960 4658820 complement(2479671..2480006) 1 NC_008750.1 KEGG: son:SO2499 hypothetical protein; hypothetical protein 2480006 4658820 Sputw3181_2152 Shewanella sp. W3-18-1 hypothetical protein YP_963534.1 2479671 R 351745 CDS YP_963535.1 120598961 4658809 complement(2480151..2480639) 1 NC_008750.1 KEGG: she:Shewmr4_2057 hypothetical protein; hypothetical protein 2480639 4658809 Sputw3181_2153 Shewanella sp. W3-18-1 hypothetical protein YP_963535.1 2480151 R 351745 CDS YP_963536.1 120598962 4661072 complement(2481376..2482044) 1 NC_008750.1 KEGG: son:SO2501 radical activating enzyme; radical activating enzyme 2482044 4661072 Sputw3181_2154 Shewanella sp. W3-18-1 radical activating enzyme YP_963536.1 2481376 R 351745 CDS YP_963537.1 120598963 4660424 2482216..2482953 1 NC_008750.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC 2482953 4660424 Sputw3181_2155 Shewanella sp. W3-18-1 queuosine biosynthesis protein QueC YP_963537.1 2482216 D 351745 CDS YP_963538.1 120598964 4658578 2482980..2483546 1 NC_008750.1 PFAM: Rhomboid family protein; KEGG: she:Shewmr4_2060 rhomboid family protein; rhomboid family protein 2483546 4658578 Sputw3181_2156 Shewanella sp. W3-18-1 rhomboid family protein YP_963538.1 2482980 D 351745 CDS YP_963539.1 120598965 4658571 complement(2483627..2485633) 1 NC_008750.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2485633 4658571 Sputw3181_2157 Shewanella sp. W3-18-1 excinuclease ABC subunit B YP_963539.1 2483627 R 351745 CDS YP_963540.1 120598966 4661380 2487294..2489198 1 NC_008750.1 PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: shm:Shewmr7_1912 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 2489198 4661380 Sputw3181_2158 Shewanella sp. W3-18-1 diguanylate cyclase/phosphodiesterase YP_963540.1 2487294 D 351745 CDS YP_963541.1 120598967 4661113 2489324..2489902 1 NC_008750.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: shm:Shewmr7_1911 electron transport complex, RnfABCDGE type, A subunit; Na(+)-translocating NADH-quinone reductase subunit E 2489902 4661113 Sputw3181_2159 Shewanella sp. W3-18-1 Na(+)-translocating NADH-quinone reductase subunit E YP_963541.1 2489324 D 351745 CDS YP_963542.1 120598968 4661142 2489904..2490503 1 NC_008750.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2490503 4661142 Sputw3181_2160 Shewanella sp. W3-18-1 electron transport complex protein RnfB YP_963542.1 2489904 D 351745 CDS YP_963543.1 120598969 4658431 2490497..2492878 1 NC_008750.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2492878 4658431 Sputw3181_2161 Shewanella sp. W3-18-1 electron transport complex protein RnfC YP_963543.1 2490497 D 351745 CDS YP_963544.1 120598970 4658393 2492944..2493993 1 NC_008750.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 2493993 rnfD 4658393 rnfD Shewanella sp. W3-18-1 electron transport complex protein RnfD YP_963544.1 2492944 D 351745 CDS YP_963545.1 120598971 4660925 2494060..2494686 1 NC_008750.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 2494686 4660925 Sputw3181_2163 Shewanella sp. W3-18-1 electron transport complex protein RnfG YP_963545.1 2494060 D 351745 CDS YP_963546.1 120598972 4658664 2494679..2495377 1 NC_008750.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 2495377 4658664 Sputw3181_2164 Shewanella sp. W3-18-1 electron transport complex protein RsxE YP_963546.1 2494679 D 351745 CDS YP_963547.1 120598973 4661717 2495393..2496034 1 NC_008750.1 KEGG: she:Shewmr4_2070 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 2496034 4661717 Sputw3181_2165 Shewanella sp. W3-18-1 endonuclease III YP_963547.1 2495393 D 351745 CDS YP_963548.1 120598974 4658641 complement(2496085..2496552) 1 NC_008750.1 KEGG: she:Shewmr4_2075 hypothetical protein; hypothetical protein 2496552 4658641 Sputw3181_2166 Shewanella sp. W3-18-1 hypothetical protein YP_963548.1 2496085 R 351745 CDS YP_963549.1 120598975 4658636 complement(2496552..2497721) 1 NC_008750.1 PFAM: Propeptide, PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: shm:Shewmr7_1899 PepSY-associated TM helix domain protein; peptidase 2497721 4658636 Sputw3181_2167 Shewanella sp. W3-18-1 peptidase YP_963549.1 2496552 R 351745 CDS YP_963550.1 120598976 4658532 2497850..2499940 1 NC_008750.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ilo:IL2511 outer membrane receptor for ferric siderophore; TonB-dependent siderophore receptor 2499940 4658532 Sputw3181_2168 Shewanella sp. W3-18-1 TonB-dependent siderophore receptor YP_963550.1 2497850 D 351745 CDS YP_963551.1 120598977 4658627 complement(2500142..2500930) 1 NC_008750.1 KEGG: shm:Shewmr7_1896 hypothetical protein; hypothetical protein 2500930 4658627 Sputw3181_2169 Shewanella sp. W3-18-1 hypothetical protein YP_963551.1 2500142 R 351745 CDS YP_963552.1 120598978 4658203 2501142..2502752 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2525 ABC transporter, ATP-binding protein; ABC transporter-like protein 2502752 4658203 Sputw3181_2170 Shewanella sp. W3-18-1 ABC transporter-like protein YP_963552.1 2501142 D 351745 CDS YP_963553.1 120598979 4660914 complement(2502878..2503465) 1 NC_008750.1 KEGG: pfl:PFL_3338 hypothetical protein; hypothetical protein 2503465 4660914 Sputw3181_2171 Shewanella sp. W3-18-1 hypothetical protein YP_963553.1 2502878 R 351745 CDS YP_963554.1 120598980 4658169 2503668..2506367 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: she:Shewmr4_2098 CoA-binding domain protein; CoA-binding domain-containing protein 2506367 4658169 Sputw3181_2172 Shewanella sp. W3-18-1 CoA-binding domain-containing protein YP_963554.1 2503668 D 351745 CDS YP_963555.1 120598981 4661025 2506642..2507424 1 NC_008750.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: son:SO2093 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 2507424 4661025 Sputw3181_2173 Shewanella sp. W3-18-1 hydrogenase nickel incorporation protein HypB YP_963555.1 2506642 D 351745 CDS YP_963556.1 120598982 4660339 2507424..2507669 1 NC_008750.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: son:SO2092 hydrogenase assembly chaperone hypC/hupF; hydrogenase assembly chaperone HypC/HupF 2507669 4660339 Sputw3181_2174 Shewanella sp. W3-18-1 hydrogenase assembly chaperone HypC/HupF YP_963556.1 2507424 D 351745 CDS YP_963557.1 120598983 4658128 2507731..2508870 1 NC_008750.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: son:SO2091 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD 2508870 4658128 Sputw3181_2175 Shewanella sp. W3-18-1 hydrogenase expression/formation protein HypD YP_963557.1 2507731 D 351745 CDS YP_963558.1 120598984 4660965 2508863..2509879 1 NC_008750.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: shm:Shewmr7_2164 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2509879 4660965 Sputw3181_2176 Shewanella sp. W3-18-1 hydrogenase expression/formation protein HypE YP_963558.1 2508863 D 351745 CDS YP_963559.1 120598985 4657705 2509879..2510226 1 NC_008750.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; KEGG: shm:Shewmr7_2165 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA 2510226 4657705 Sputw3181_2177 Shewanella sp. W3-18-1 hydrogenase nickel incorporation protein HypA YP_963559.1 2509879 D 351745 CDS YP_963560.1 120598986 4658009 complement(2510363..2511304) 1 NC_008750.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2511304 4658009 Sputw3181_2178 Shewanella sp. W3-18-1 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_963560.1 2510363 R 351745 CDS YP_963561.1 120598987 4660903 complement(2511401..2511697) 1 NC_008750.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2511697 ihfA 4660903 ihfA Shewanella sp. W3-18-1 integration host factor subunit alpha YP_963561.1 2511401 R 351745 CDS YP_963562.1 120598988 4657984 complement(2511701..2514088) 1 NC_008750.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2514088 pheT 4657984 pheT Shewanella sp. W3-18-1 phenylalanyl-tRNA synthetase subunit beta YP_963562.1 2511701 R 351745 CDS YP_963563.1 120598989 4657980 complement(2514104..2515087) 1 NC_008750.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2515087 pheS 4657980 pheS Shewanella sp. W3-18-1 phenylalanyl-tRNA synthetase subunit alpha YP_963563.1 2514104 R 351745 CDS YP_963564.1 120598990 4657694 2515611..2517119 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_2170 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2517119 4657694 Sputw3181_2182 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_963564.1 2515611 D 351745 CDS YP_963565.1 120598991 4657970 2517309..2519294 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_1806 TonB-dependent receptor; TonB-dependent receptor 2519294 4657970 Sputw3181_2183 Shewanella sp. W3-18-1 TonB-dependent receptor YP_963565.1 2517309 D 351745 CDS YP_963566.1 120598992 4657959 2519800..2520171 1 NC_008750.1 KEGG: shm:Shewmr7_2388 cytochrome c3; hypothetical protein 2520171 4657959 Sputw3181_2184 Shewanella sp. W3-18-1 hypothetical protein YP_963566.1 2519800 D 351745 CDS YP_963567.1 120598993 4657945 complement(2520345..2522339) 1 NC_008750.1 SMART: helicase c2; KEGG: shm:Shewmr7_2172 helicase C2; helicase c2 2522339 4657945 Sputw3181_2185 Shewanella sp. W3-18-1 helicase c2 YP_963567.1 2520345 R 351745 CDS YP_963568.1 120598994 4657924 complement(2524253..2524927) 1 NC_008750.1 TIGRFAM: CRISPR-associated protein, Csy4 family; KEGG: zmo:ZMO0685 hypothetical protein; CRISPR-associated Csy4 family protein 2524927 4657924 Sputw3181_2186 Shewanella sp. W3-18-1 CRISPR-associated Csy4 family protein YP_963568.1 2524253 R 351745 CDS YP_963569.1 120598995 4657918 complement(2524930..2525958) 1 NC_008750.1 TIGRFAM: CRISPR-associated protein, Csy3 family; KEGG: lpf:lpl2841 hypothetical protein; CRISPR-associated Csy3 family protein 2525958 4657918 Sputw3181_2187 Shewanella sp. W3-18-1 CRISPR-associated Csy3 family protein YP_963569.1 2524930 R 351745 CDS YP_963570.1 120598996 4657906 complement(2525984..2526934) 1 NC_008750.1 TIGRFAM: CRISPR-associated protein, Csy2 family; KEGG: lpf:plpl0049 hypothetical protein; CRISPR-associated Csy2 family protein 2526934 4657906 Sputw3181_2188 Shewanella sp. W3-18-1 CRISPR-associated Csy2 family protein YP_963570.1 2525984 R 351745 CDS YP_963571.1 120598997 4660943 complement(2526931..2528229) 1 NC_008750.1 TIGRFAM: CRISPR-associated protein, Csy1 family; KEGG: lpf:lpl2839 hypothetical protein; CRISPR-associated Csy1 family protein 2528229 4660943 Sputw3181_2189 Shewanella sp. W3-18-1 CRISPR-associated Csy1 family protein YP_963571.1 2526931 R 351745 CDS YP_963572.1 120598998 4657670 complement(2528610..2532023) 1 NC_008750.1 TIGRFAM: CRISPR-associated helicase Cas3 family; KEGG: lpf:lpl2838 hypothetical protein; CRISPR-associated helicase Cas3 family protein 2532023 4657670 Sputw3181_2190 Shewanella sp. W3-18-1 CRISPR-associated helicase Cas3 family protein YP_963572.1 2528610 R 351745 CDS YP_963573.1 120598999 4657826 complement(2532036..2533013) 1 NC_008750.1 TIGRFAM: CRISPR-associated protein Cas1; KEGG: ppr:PBPRB1995 hypothetical protein; CRISPR-associated Cas1 family protein 2533013 4657826 Sputw3181_2191 Shewanella sp. W3-18-1 CRISPR-associated Cas1 family protein YP_963573.1 2532036 R 351745 CDS YP_963574.1 120599000 4660773 2534487..2535680 1 NC_008750.1 PFAM: beta-lactamase; KEGG: pae:PA2315 hypothetical protein; beta-lactamase 2535680 4660773 Sputw3181_2193 Shewanella sp. W3-18-1 beta-lactamase YP_963574.1 2534487 D 351745 CDS YP_963575.1 120599001 4657776 2535677..2536894 1 NC_008750.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_3692 general substrate transporter; major facilitator superfamily transporter 2536894 4657776 Sputw3181_2194 Shewanella sp. W3-18-1 major facilitator superfamily transporter YP_963575.1 2535677 D 351745 CDS YP_963576.1 120599002 4661705 2537000..2538037 1 NC_008750.1 PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_A4906 major facilitator superfamily (MFS_1) transporter; major facilitator superfamily transporter 2538037 4661705 Sputw3181_2195 Shewanella sp. W3-18-1 major facilitator superfamily transporter YP_963576.1 2537000 D 351745 CDS YP_963577.1 120599003 4661370 complement(2538570..2539691) 1 NC_008750.1 KEGG: psb:Psyr_4511 hypothetical protein; hypothetical protein 2539691 4661370 Sputw3181_2196 Shewanella sp. W3-18-1 hypothetical protein YP_963577.1 2538570 R 351745 CDS YP_963578.1 120599004 4661726 complement(2539702..2540907) 1 NC_008750.1 PFAM: protein of unknown function DUF955; KEGG: ilo:IL2196 predicted metal-dependent peptidase; hypothetical protein 2540907 4661726 Sputw3181_2197 Shewanella sp. W3-18-1 hypothetical protein YP_963578.1 2539702 R 351745 CDS YP_963579.1 120599005 4661763 complement(2541330..2541773) 1 NC_008750.1 hypothetical protein 2541773 4661763 Sputw3181_2198 Shewanella sp. W3-18-1 hypothetical protein YP_963579.1 2541330 R 351745 CDS YP_963580.1 120599006 4661445 complement(2541821..2542360) 1 NC_008750.1 hypothetical protein 2542360 4661445 Sputw3181_2199 Shewanella sp. W3-18-1 hypothetical protein YP_963580.1 2541821 R 351745 CDS YP_963581.1 120599007 4661778 complement(2542363..2542917) 1 NC_008750.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: gsu:GSU1711 integrative genetic element Gsu5, resolvase; resolvase domain-containing protein 2542917 4661778 Sputw3181_2200 Shewanella sp. W3-18-1 resolvase domain-containing protein YP_963581.1 2542363 R 351745 CDS YP_963582.1 120599008 4661754 complement(2543301..2543738) 1 NC_008750.1 KEGG: vch:VC0508 hypothetical protein; hypothetical protein 2543738 4661754 Sputw3181_2201 Shewanella sp. W3-18-1 hypothetical protein YP_963582.1 2543301 R 351745 CDS YP_963583.1 120599009 4661373 complement(2543735..2544217) 1 NC_008750.1 PFAM: DNA repair protein RadC; KEGG: vvy:VV2251 DNA repair protein; DNA repair protein RadC 2544217 4661373 Sputw3181_2202 Shewanella sp. W3-18-1 DNA repair protein RadC YP_963583.1 2543735 R 351745 CDS YP_963584.1 120599010 4661151 2544374..2544784 1 NC_008750.1 hypothetical protein 2544784 4661151 Sputw3181_2203 Shewanella sp. W3-18-1 hypothetical protein YP_963584.1 2544374 D 351745 CDS YP_963585.1 120599011 4661073 2546144..2546566 1 NC_008750.1 hypothetical protein 2546566 4661073 Sputw3181_2206 Shewanella sp. W3-18-1 hypothetical protein YP_963585.1 2546144 D 351745 CDS YP_963586.1 120599012 4661652 2546714..2549434 1 NC_008750.1 TIGRFAM: phage/plasmid primase, P4 family; PFAM: Poxvirus D5 protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; KEGG: lin:lin2587 similar to bacteriophage protein; P4 family phage/plasmid primase 2549434 4661652 Sputw3181_2207 Shewanella sp. W3-18-1 P4 family phage/plasmid primase YP_963586.1 2546714 D 351745 CDS YP_963587.1 120599013 4657942 2549837..2550973 1 NC_008750.1 SMART: protein phosphatase 2C domain protein; KEGG: sty:STY4824 hypothetical protein; protein phosphatase 2C domain-containing protein 2550973 4657942 Sputw3181_2208 Shewanella sp. W3-18-1 protein phosphatase 2C domain-containing protein YP_963587.1 2549837 D 351745 CDS YP_963588.1 120599014 4661036 2550957..2552009 1 NC_008750.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: stt:t4520 protein kinase; protein kinase 2552009 4661036 Sputw3181_2209 Shewanella sp. W3-18-1 protein kinase YP_963588.1 2550957 D 351745 CDS YP_963589.1 120599015 4661246 2552006..2553073 1 NC_008750.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: stt:t4519 protein kinase; protein kinase 2553073 4661246 Sputw3181_2210 Shewanella sp. W3-18-1 protein kinase YP_963589.1 2552006 D 351745 CDS YP_963590.1 120599016 4659432 complement(2553240..2555063) 1 NC_008750.1 PFAM: phage integrase family protein; KEGG: vpa:VP0643 hypothetical protein; phage integrase family protein 2555063 4659432 Sputw3181_2211 Shewanella sp. W3-18-1 phage integrase family protein YP_963590.1 2553240 R 351745 CDS YP_963591.1 120599017 4660768 complement(2555495..2557489) 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: shm:Shewmr7_1760 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2557489 4660768 Sputw3181_2212 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_963591.1 2555495 R 351745 CDS YP_963592.1 120599018 4659865 complement(2557737..2558369) 1 NC_008750.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO2137 multiple antibiotic resistance protein; hypothetical protein 2558369 4659865 Sputw3181_2213 Shewanella sp. W3-18-1 hypothetical protein YP_963592.1 2557737 R 351745 CDS YP_963593.1 120599019 4659792 2558687..2561290 1 NC_008750.1 PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: she:Shewmr4_1683 iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2561290 4659792 Sputw3181_2214 Shewanella sp. W3-18-1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_963593.1 2558687 D 351745 CDS YP_963594.1 120599020 4660093 complement(2561455..2562390) 1 NC_008750.1 KEGG: she:Shewmr4_2121 hypothetical protein; hypothetical protein 2562390 4660093 Sputw3181_2215 Shewanella sp. W3-18-1 hypothetical protein YP_963594.1 2561455 R 351745 CDS YP_963595.1 120599021 4659808 complement(2562461..2562919) 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_2122 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2562919 4659808 Sputw3181_2216 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_963595.1 2562461 R 351745 CDS YP_963596.1 120599022 4660304 complement(2563141..2565204) 1 NC_008750.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: shm:Shewmr7_2199 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 2565204 4660304 Sputw3181_2217 Shewanella sp. W3-18-1 peptidase S9 prolyl oligopeptidase YP_963596.1 2563141 R 351745 CDS YP_963597.1 120599023 4660514 complement(2565467..2567011) 1 NC_008750.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: son:SO2222 fumarate hydratase, class I, anaerobic, putative; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 2567011 4660514 Sputw3181_2218 Shewanella sp. W3-18-1 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha YP_963597.1 2565467 R 351745 CDS YP_963598.1 120599024 4660592 2567131..2568531 1 NC_008750.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: son:SO2221 para-aminobenzoate synthase, component I; para-aminobenzoate synthase subunit I 2568531 4660592 Sputw3181_2219 Shewanella sp. W3-18-1 para-aminobenzoate synthase subunit I YP_963598.1 2567131 D 351745 CDS YP_963599.1 120599025 4660680 2568571..2569155 1 NC_008750.1 PFAM: NUDIX hydrolase; KEGG: she:Shewmr4_2126 NUDIX hydrolase; NUDIX hydrolase 2569155 4660680 Sputw3181_2220 Shewanella sp. W3-18-1 NUDIX hydrolase YP_963599.1 2568571 D 351745 CDS YP_963600.1 120599026 4660821 complement(2569176..2569511) 1 NC_008750.1 KEGG: shm:Shewmr7_2203 hypothetical protein; hypothetical protein 2569511 4660821 Sputw3181_2221 Shewanella sp. W3-18-1 hypothetical protein YP_963600.1 2569176 R 351745 CDS YP_963601.1 120599027 4660919 2569662..2571062 1 NC_008750.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2571062 asnC 4660919 asnC Shewanella sp. W3-18-1 asparaginyl-tRNA synthetase YP_963601.1 2569662 D 351745 CDS YP_963602.1 120599028 4660915 complement(2571200..2571985) 1 NC_008750.1 SMART: extracellular solute-binding protein, family 3; KEGG: dvu:DVU0852 extracellular solute-binding protein, putative; extracellular solute-binding protein 2571985 4660915 Sputw3181_2223 Shewanella sp. W3-18-1 extracellular solute-binding protein YP_963602.1 2571200 R 351745 CDS YP_963603.1 120599029 4661547 2572278..2573291 1 NC_008750.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 2573291 ddl 4661547 ddl Shewanella sp. W3-18-1 D-alanyl-alanine synthetase A YP_963603.1 2572278 D 351745 CDS YP_963604.1 120599030 4660410 complement(2573382..2575631) 1 NC_008750.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold domain protein; KEGG: she:Shewmr4_2130 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2575631 4660410 Sputw3181_2225 Shewanella sp. W3-18-1 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_963604.1 2573382 R 351745 CDS YP_963605.1 120599031 4660694 complement(2575769..2576983) 1 NC_008750.1 PFAM: Fmu (Sun) domain protein; KEGG: she:Shewmr4_2131 Fmu (Sun) domain protein; Fmu (Sun) domain-containing protein 2576983 4660694 Sputw3181_2226 Shewanella sp. W3-18-1 Fmu (Sun) domain-containing protein YP_963605.1 2575769 R 351745 CDS YP_963606.1 120599032 4660737 complement(2577333..2577773) 1 NC_008750.1 KEGG: cgb:cg2479 hypothetical protein; hypothetical protein 2577773 4660737 Sputw3181_2228 Shewanella sp. W3-18-1 hypothetical protein YP_963606.1 2577333 R 351745 CDS YP_963607.1 120599033 4660633 complement(2577917..2578762) 1 NC_008750.1 KEGG: shm:Shewmr7_2218 hypothetical protein; hypothetical protein 2578762 4660633 Sputw3181_2229 Shewanella sp. W3-18-1 hypothetical protein YP_963607.1 2577917 R 351745 CDS YP_963608.1 120599034 4660587 complement(2578993..2579484) 1 NC_008750.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 2579484 def 4660587 def Shewanella sp. W3-18-1 peptide deformylase YP_963608.1 2578993 R 351745 CDS YP_963609.1 120599035 4660358 2579753..2580178 1 NC_008750.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: shm:Shewmr7_2220 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 2580178 4660358 Sputw3181_2231 Shewanella sp. W3-18-1 methylated-DNA--protein-cysteine methyltransferase YP_963609.1 2579753 D 351745 CDS YP_963610.1 120599036 4660530 2580286..2581176 1 NC_008750.1 KEGG: son:SO2533 hypothetical protein; hypothetical protein 2581176 4660530 Sputw3181_2232 Shewanella sp. W3-18-1 hypothetical protein YP_963610.1 2580286 D 351745 CDS YP_963611.1 120599037 4660516 complement(2581341..2582120) 1 NC_008750.1 PFAM: glutamine amidotransferase, class-II; KEGG: shm:Shewmr7_2222 glutamine amidotransferase, class-II; glutamine amidotransferase, class-II 2582120 4660516 Sputw3181_2233 Shewanella sp. W3-18-1 glutamine amidotransferase, class-II YP_963611.1 2581341 R 351745 CDS YP_963612.1 120599038 4660467 2582364..2584811 1 NC_008750.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2584811 fadE 4660467 fadE Shewanella sp. W3-18-1 acyl-CoA dehydrogenase YP_963612.1 2582364 D 351745 CDS YP_963613.1 120599039 4660449 complement(2585073..2585492) 1 NC_008750.1 PFAM: PRC-barrel domain protein; KEGG: net:Neut_2352 PRC-barrel domain protein; PRC-barrel domain-containing protein 2585492 4660449 Sputw3181_2235 Shewanella sp. W3-18-1 PRC-barrel domain-containing protein YP_963613.1 2585073 R 351745 CDS YP_963614.1 120599040 4659823 2585782..2585943 1 NC_008750.1 KEGG: rfr:Rfer_1879 hypothetical protein; hypothetical protein 2585943 4659823 Sputw3181_2236 Shewanella sp. W3-18-1 hypothetical protein YP_963614.1 2585782 D 351745 CDS YP_963615.1 120599041 4660941 2585986..2586297 1 NC_008750.1 PFAM: transport-associated; KEGG: son:SO2549 hypothetical protein; transport-associated 2586297 4660941 Sputw3181_2237 Shewanella sp. W3-18-1 transport-associated YP_963615.1 2585986 D 351745 CDS YP_963616.1 120599042 4659872 2586434..2587132 1 NC_008750.1 KEGG: son:SO2550 transcriptional regulator-related protein; CRP/FNR family transcriptional regulator 2587132 4659872 Sputw3181_2238 Shewanella sp. W3-18-1 CRP/FNR family transcriptional regulator YP_963616.1 2586434 D 351745 CDS YP_963617.1 120599043 4659408 2587387..2588022 1 NC_008750.1 PFAM: cyclic nucleotide-binding; KEGG: son:SO2551 transcriptional regulator-related protein; cyclic nucleotide-binding protein 2588022 4659408 Sputw3181_2239 Shewanella sp. W3-18-1 cyclic nucleotide-binding protein YP_963617.1 2587387 D 351745 CDS YP_963618.1 120599044 4659377 2588403..2588771 1 NC_008750.1 KEGG: son:SO2552 hypothetical protein; hypothetical protein 2588771 4659377 Sputw3181_2240 Shewanella sp. W3-18-1 hypothetical protein YP_963618.1 2588403 D 351745 CDS YP_963619.1 120599045 4659312 2588863..2589690 1 NC_008750.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: son:SO2553 hyperosmotically inducible periplasmic protein; transport-associated 2589690 4659312 Sputw3181_2241 Shewanella sp. W3-18-1 transport-associated YP_963619.1 2588863 D 351745 CDS YP_963620.1 120599046 4659288 2589806..2590231 1 NC_008750.1 KEGG: son:SO2554 hypothetical protein; hypothetical protein 2590231 4659288 Sputw3181_2242 Shewanella sp. W3-18-1 hypothetical protein YP_963620.1 2589806 D 351745 CDS YP_963621.1 120599047 4659255 2590228..2591094 1 NC_008750.1 PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_2042 OmpA/MotB; OmpA/MotB domain-containing protein 2591094 4659255 Sputw3181_2243 Shewanella sp. W3-18-1 OmpA/MotB domain-containing protein YP_963621.1 2590228 D 351745 CDS YP_963622.1 120599048 4660696 complement(2591667..2593034) 1 NC_008750.1 KEGG: shm:Shewmr7_2233 hypothetical protein; hypothetical protein 2593034 4660696 Sputw3181_2244 Shewanella sp. W3-18-1 hypothetical protein YP_963622.1 2591667 R 351745 CDS YP_963623.1 120599049 4658826 complement(2593045..2593773) 1 NC_008750.1 KEGG: son:SO2559 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2593773 4658826 Sputw3181_2245 Shewanella sp. W3-18-1 DNA polymerase III subunit epsilon YP_963623.1 2593045 R 351745 CDS YP_963624.1 120599050 4658781 2593844..2594314 1 NC_008750.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2594314 rnhA 4658781 rnhA Shewanella sp. W3-18-1 ribonuclease H YP_963624.1 2593844 D 351745 CDS YP_963625.1 120599051 4658765 complement(2594478..2595374) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2236 transcriptional regulator, LysR family; LysR family transcriptional regulator 2595374 4658765 Sputw3181_2247 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_963625.1 2594478 R 351745 CDS YP_963626.1 120599052 4658732 complement(2595398..2596132) 1 NC_008750.1 PFAM: Methyltransferase type 11; KEGG: she:Shewmr4_2160 methyltransferase type 11; type 11 methyltransferase 2596132 4658732 Sputw3181_2248 Shewanella sp. W3-18-1 type 11 methyltransferase YP_963626.1 2595398 R 351745 CDS YP_963627.1 120599053 4658355 2596298..2597101 1 NC_008750.1 PFAM: beta-lactamase domain protein; KEGG: shm:Shewmr7_2238 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 2597101 4658355 Sputw3181_2249 Shewanella sp. W3-18-1 hydroxyacylglutathione hydrolase YP_963627.1 2596298 D 351745 CDS YP_963628.1 120599054 4658644 2597344..2598888 1 NC_008750.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: shm:Shewmr7_2239 MLTD_N domain protein; MltD domain-containing protein 2598888 4658644 Sputw3181_2250 Shewanella sp. W3-18-1 MltD domain-containing protein YP_963628.1 2597344 D 351745 CDS YP_963629.1 120599055 4658135 complement(2598995..2599600) 1 NC_008750.1 KEGG: shm:Shewmr7_2240 intracellular proteinase inhibitor domain protein; intracellular proteinase inhibitor domain-containing protein 2599600 4658135 Sputw3181_2251 Shewanella sp. W3-18-1 intracellular proteinase inhibitor domain-containing protein YP_963629.1 2598995 R 351745 CDS YP_963630.1 120599056 4658127 complement(2599600..2601426) 1 NC_008750.1 PFAM: AsmA family protein; KEGG: shm:Shewmr7_2241 AsmA family protein; AsmA family protein 2601426 4658127 Sputw3181_2252 Shewanella sp. W3-18-1 AsmA family protein YP_963630.1 2599600 R 351745 CDS YP_963631.1 120599057 4657718 complement(2601469..2601963) 1 NC_008750.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 2601963 4657718 Sputw3181_2253 Shewanella sp. W3-18-1 ribonuclease activity regulator protein RraA YP_963631.1 2601469 R 351745 CDS YP_963632.1 120599058 4658015 2602197..2602517 1 NC_008750.1 KEGG: son:SO2569 hypothetical protein; hypothetical protein 2602517 4658015 Sputw3181_2254 Shewanella sp. W3-18-1 hypothetical protein YP_963632.1 2602197 D 351745 CDS YP_963633.1 120599059 4657689 complement(2602776..2604548) 1 NC_008750.1 PFAM: protein of unknown function DUF885; KEGG: son:SO2570 lipoprotein, putative; hypothetical protein 2604548 4657689 Sputw3181_2255 Shewanella sp. W3-18-1 hypothetical protein YP_963633.1 2602776 R 351745 CDS YP_963634.1 120599060 4657680 2604928..2606331 1 NC_008750.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO2571 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 2606331 4657680 Sputw3181_2256 Shewanella sp. W3-18-1 DEAD/DEAH box helicase YP_963634.1 2604928 D 351745 CDS YP_963635.1 120599061 4657676 2606356..2606850 1 NC_008750.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: she:Shewmr4_2169 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 2606850 4657676 Sputw3181_2257 Shewanella sp. W3-18-1 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_963635.1 2606356 D 351745 CDS YP_963636.1 120599062 4657816 complement(2606918..2607391) 1 NC_008750.1 PFAM: protein of unknown function UPF0153; KEGG: she:Shewmr4_2170 protein of unknown function UPF0153; hypothetical protein 2607391 4657816 Sputw3181_2258 Shewanella sp. W3-18-1 hypothetical protein YP_963636.1 2606918 R 351745 CDS YP_963637.1 120599063 4661884 complement(2607551..2607829) 1 NC_008750.1 PFAM: protein of unknown function DUF709; KEGG: son:SO2575 hypothetical protein; hypothetical protein 2607829 4661884 Sputw3181_2259 Shewanella sp. W3-18-1 hypothetical protein YP_963637.1 2607551 R 351745 CDS YP_963638.1 120599064 4657779 2607953..2608618 1 NC_008750.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 2608618 minC 4657779 minC Shewanella sp. W3-18-1 septum formation inhibitor YP_963638.1 2607953 D 351745 CDS YP_963639.1 120599065 4657786 2608646..2609455 1 NC_008750.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: shm:Shewmr7_2251 septum site-determining protein MinD; septum site-determining protein MinD 2609455 4657786 Sputw3181_2261 Shewanella sp. W3-18-1 septum site-determining protein MinD YP_963639.1 2608646 D 351745 CDS YP_963640.1 120599066 4658372 2609458..2609715 1 NC_008750.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 2609715 minE 4658372 minE Shewanella sp. W3-18-1 cell division topological specificity factor MinE YP_963640.1 2609458 D 351745 CDS YP_963641.1 120599067 4657810 complement(2609788..2610891) 1 NC_008750.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: she:Shewmr4_2176 ribonuclease D; ribonuclease D 2610891 4657810 Sputw3181_2263 Shewanella sp. W3-18-1 ribonuclease D YP_963641.1 2609788 R 351745 CDS YP_963642.1 120599068 4657820 complement(2610969..2612642) 1 NC_008750.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2612642 4657820 Sputw3181_2264 Shewanella sp. W3-18-1 long-chain-fatty-acid--CoA ligase YP_963642.1 2610969 R 351745 CDS YP_963643.1 120599069 4657936 complement(2612841..2613707) 1 NC_008750.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: shm:Shewmr7_2255 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 2613707 4657936 Sputw3181_2265 Shewanella sp. W3-18-1 alpha/beta hydrolase fold domain-containing protein YP_963643.1 2612841 R 351745 CDS YP_963644.1 120599070 4658083 complement(2613729..2614541) 1 NC_008750.1 KEGG: shm:Shewmr7_2256 hypothetical protein; hypothetical protein 2614541 4658083 Sputw3181_2266 Shewanella sp. W3-18-1 hypothetical protein YP_963644.1 2613729 R 351745 CDS YP_963645.1 120599071 4658130 complement(2614744..2615460) 1 NC_008750.1 KEGG: she:Shewmr4_2180 hypothetical protein; hypothetical protein 2615460 4658130 Sputw3181_2267 Shewanella sp. W3-18-1 hypothetical protein YP_963645.1 2614744 R 351745 CDS YP_963646.1 120599072 4658190 complement(2615453..2615776) 1 NC_008750.1 KEGG: shm:Shewmr7_2258 hypothetical protein; hypothetical protein 2615776 4658190 Sputw3181_2268 Shewanella sp. W3-18-1 hypothetical protein YP_963646.1 2615453 R 351745 CDS YP_963647.1 120599073 4658227 complement(2615883..2616593) 1 NC_008750.1 PFAM: peptidase M22, glycoprotease; KEGG: son:SO2586 hypothetical protein; peptidase M22, glycoprotease 2616593 4658227 Sputw3181_2269 Shewanella sp. W3-18-1 peptidase M22, glycoprotease YP_963647.1 2615883 R 351745 CDS YP_963648.1 120599074 4658234 2616985..2617968 1 NC_008750.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2617968 4658234 Sputw3181_2270 Shewanella sp. W3-18-1 delta-aminolevulinic acid dehydratase YP_963648.1 2616985 D 351745 CDS YP_963649.1 120599075 4658253 complement(2618064..2618969) 1 NC_008750.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 2618969 4658253 Sputw3181_2271 Shewanella sp. W3-18-1 bifunctional methionine sulfoxide reductase B/A protein YP_963649.1 2618064 R 351745 CDS YP_963650.1 120599076 4658260 2619350..2620189 1 NC_008750.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: shm:Shewmr7_2262 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 2620189 4658260 Sputw3181_2272 Shewanella sp. W3-18-1 2OG-Fe(II) oxygenase YP_963650.1 2619350 D 351745 CDS YP_963651.1 120599077 4658269 2620340..2621281 1 NC_008750.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 2621281 rbgA 4658269 rbgA Shewanella sp. W3-18-1 ribosomal biogenesis GTPase YP_963651.1 2620340 D 351745 CDS YP_963652.1 120599078 4658274 complement(2621672..2622139) 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB1061 hypothetical protein; N-acetyltransferase GCN5 2622139 4658274 Sputw3181_2274 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_963652.1 2621672 R 351745 CDS YP_963653.1 120599079 4658294 complement(2622438..2622740) 1 NC_008750.1 KEGG: shm:Shewmr7_3172 hypothetical protein; hypothetical protein 2622740 4658294 Sputw3181_2275 Shewanella sp. W3-18-1 hypothetical protein YP_963653.1 2622438 R 351745 CDS YP_963654.1 120599080 4658314 complement(2622804..2623286) 1 NC_008750.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: she:Shewmr4_2189 protein tyrosine phosphatase; protein tyrosine phosphatase 2623286 4658314 Sputw3181_2276 Shewanella sp. W3-18-1 protein tyrosine phosphatase YP_963654.1 2622804 R 351745 CDS YP_963655.1 120599081 4658324 complement(2623340..2624269) 1 NC_008750.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 2624269 4658324 Sputw3181_2277 Shewanella sp. W3-18-1 DNA ligase YP_963655.1 2623340 R 351745 CDS YP_963656.1 120599082 4658443 2624528..2624899 1 NC_008750.1 PFAM: diacylglycerol kinase; KEGG: shm:Shewmr7_2269 diacylglycerol kinase; diacylglycerol kinase 2624899 4658443 Sputw3181_2278 Shewanella sp. W3-18-1 diacylglycerol kinase YP_963656.1 2624528 D 351745 CDS YP_963657.1 120599083 4658379 complement(2624979..2625827) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2202 transcriptional regulator, LysR family; LysR family transcriptional regulator 2625827 4658379 Sputw3181_2279 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_963657.1 2624979 R 351745 CDS YP_963658.1 120599084 4658446 2625936..2626382 1 NC_008750.1 PFAM: protein of unknown function DUF413; KEGG: she:Shewmr4_2194 protein of unknown function DUF413; hypothetical protein 2626382 4658446 Sputw3181_2280 Shewanella sp. W3-18-1 hypothetical protein YP_963658.1 2625936 D 351745 CDS YP_963659.1 120599085 4658374 2626403..2627398 1 NC_008750.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO2200 ribosomal protein S6 modification protein, putative; alpha-L-glutamate ligase 2627398 4658374 Sputw3181_2281 Shewanella sp. W3-18-1 alpha-L-glutamate ligase YP_963659.1 2626403 D 351745 CDS YP_963660.1 120599086 4658353 2627724..2628587 1 NC_008750.1 KEGG: shm:Shewmr7_2273 hypothetical protein; hypothetical protein 2628587 4658353 Sputw3181_2282 Shewanella sp. W3-18-1 hypothetical protein YP_963660.1 2627724 D 351745 CDS YP_963661.1 120599087 4658748 complement(2628645..2630243) 1 NC_008750.1 PFAM: peptidase M28; KEGG: she:Shewmr4_2197 peptidase M28; peptidase M28 2630243 4658748 Sputw3181_2283 Shewanella sp. W3-18-1 peptidase M28 YP_963661.1 2628645 R 351745 CDS YP_963662.1 120599088 4658579 2630432..2631457 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: she:Shewmr4_2198 diguanylate cyclase; diguanylate cyclase 2631457 4658579 Sputw3181_2284 Shewanella sp. W3-18-1 diguanylate cyclase YP_963662.1 2630432 D 351745 CDS YP_963663.1 120599089 4658767 complement(2631525..2632139) 1 NC_008750.1 TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: she:Shewmr4_2199 sortase family protein; sortase family protein 2632139 4658767 Sputw3181_2285 Shewanella sp. W3-18-1 sortase family protein YP_963663.1 2631525 R 351745 CDS YP_963664.1 120599090 4658553 complement(2632152..2634425) 1 NC_008750.1 KEGG: shm:Shewmr7_2277 vault protein inter-alpha-trypsin domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain; PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; cell wall anchor domain-containing protein 2634425 4658553 Sputw3181_2286 Shewanella sp. W3-18-1 cell wall anchor domain-containing protein YP_963664.1 2632152 R 351745 CDS YP_963665.1 120599091 4658862 2634701..2635393 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2193 DNA-binding response regulator; two component transcriptional regulator 2635393 4658862 Sputw3181_2287 Shewanella sp. W3-18-1 two component transcriptional regulator YP_963665.1 2634701 D 351745 CDS YP_963666.1 120599092 4658912 2635426..2637585 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_2280 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2637585 4658912 Sputw3181_2288 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_963666.1 2635426 D 351745 CDS YP_963667.1 120599093 4658937 2637806..2639005 1 NC_008750.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 2639005 4658937 Sputw3181_2289 Shewanella sp. W3-18-1 cystathionine beta-lyase YP_963667.1 2637806 D 351745 CDS YP_963668.1 120599094 4659032 complement(2639120..2639608) 1 NC_008750.1 PFAM: CreA family protein; KEGG: she:Shewmr4_2205 CreA family protein; CreA family protein 2639608 4659032 Sputw3181_2290 Shewanella sp. W3-18-1 CreA family protein YP_963668.1 2639120 R 351745 CDS YP_963669.1 120599095 4659026 complement(2639640..2641106) 1 NC_008750.1 KEGG: she:Shewmr4_2206 hypothetical protein; putative chaperone 2641106 4659026 Sputw3181_2291 Shewanella sp. W3-18-1 putative chaperone YP_963669.1 2639640 R 351745 CDS YP_963670.1 120599096 4659070 2641551..2643713 1 NC_008750.1 PFAM: Polyphosphate kinase; KEGG: she:Shewmr4_2207 polyphosphate kinase; polyphosphate kinase 2643713 4659070 Sputw3181_2292 Shewanella sp. W3-18-1 polyphosphate kinase YP_963670.1 2641551 D 351745 CDS YP_963671.1 120599097 4659560 2643757..2645310 1 NC_008750.1 PFAM: Ppx/GppA phosphatase; KEGG: she:Shewmr4_2208 Ppx/GppA phosphatase; Ppx/GppA phosphatase 2645310 4659560 Sputw3181_2293 Shewanella sp. W3-18-1 Ppx/GppA phosphatase YP_963671.1 2643757 D 351745 CDS YP_963672.1 120599098 4659667 complement(2645445..2646692) 1 NC_008750.1 PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1697 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2646692 4659667 Sputw3181_2294 Shewanella sp. W3-18-1 major facilitator superfamily transporter YP_963672.1 2645445 R 351745 CDS YP_963673.1 120599099 4658992 2646833..2647714 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_1621 transcriptional regulator, LysR family; LysR family transcriptional regulator 2647714 4658992 Sputw3181_2295 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_963673.1 2646833 D 351745 CDS YP_963674.1 120599100 4658957 complement(2647761..2648165) 1 NC_008750.1 KEGG: son:SO1913 hypothetical protein; hypothetical protein 2648165 4658957 Sputw3181_2296 Shewanella sp. W3-18-1 hypothetical protein YP_963674.1 2647761 R 351745 CDS YP_963675.1 120599101 4658955 complement(2648167..2649033) 1 NC_008750.1 KEGG: she:Shewmr4_1619 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 2649033 4658955 Sputw3181_2297 Shewanella sp. W3-18-1 acyl-CoA thioesterase II YP_963675.1 2648167 R 351745 CDS YP_963676.1 120599102 4659075 complement(2649151..2650092) 1 NC_008750.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: she:Shewmr4_1618 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2650092 4659075 Sputw3181_2298 Shewanella sp. W3-18-1 short-chain dehydrogenase/reductase SDR YP_963676.1 2649151 R 351745 CDS YP_963677.1 120599103 4659226 2650489..2651364 1 NC_008750.1 TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: son:SO1910 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2651364 4659226 Sputw3181_2299 Shewanella sp. W3-18-1 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_963677.1 2650489 D 351745 CDS YP_963678.1 120599104 4659273 complement(2651511..2652323) 1 NC_008750.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: son:SO1909 hypothetical protein; extradiol ring-cleavage dioxygenase III subunit B 2652323 4659273 Sputw3181_2300 Shewanella sp. W3-18-1 extradiol ring-cleavage dioxygenase III subunit B YP_963678.1 2651511 R 351745 CDS YP_963679.1 120599105 4659317 2652669..2653559 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1689 transcriptional regulator, LysR family; LysR family transcriptional regulator 2653559 4659317 Sputw3181_2301 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_963679.1 2652669 D 351745 CDS YP_963680.1 120599106 4659380 complement(2653713..2655239) 1 NC_008750.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2655239 4659380 Sputw3181_2302 Shewanella sp. W3-18-1 6-phosphogluconate dehydrogenase YP_963680.1 2653713 R 351745 CDS YP_963681.1 120599107 4659383 complement(2655390..2655704) 1 NC_008750.1 PFAM: small multidrug resistance protein; KEGG: son:SO1901 sugE protein; small multidrug resistance protein 2655704 4659383 Sputw3181_2303 Shewanella sp. W3-18-1 small multidrug resistance protein YP_963681.1 2655390 R 351745 CDS YP_963682.1 120599108 4659400 complement(2656002..2657960) 1 NC_008750.1 PFAM: AMP-dependent synthetase and ligase; KEGG: she:Shewmr4_2319 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2657960 4659400 Sputw3181_2304 Shewanella sp. W3-18-1 AMP-dependent synthetase and ligase YP_963682.1 2656002 R 351745 CDS YP_963683.1 120599109 4659130 2658240..2658644 1 NC_008750.1 PFAM: regulatory protein, MerR; KEGG: shm:Shewmr7_2393 transcriptional regulator, MerR family; MerR family transcriptional regulator 2658644 4659130 Sputw3181_2305 Shewanella sp. W3-18-1 MerR family transcriptional regulator YP_963683.1 2658240 D 351745 CDS YP_963684.1 120599110 4659447 2658797..2659966 1 NC_008750.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: son:SO1897 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2659966 4659447 Sputw3181_2306 Shewanella sp. W3-18-1 acyl-CoA dehydrogenase domain-containing protein YP_963684.1 2658797 D 351745 CDS YP_963685.1 120599111 4659490 2660070..2661677 1 NC_008750.1 PFAM: carboxyl transferase; KEGG: she:Shewmr4_2323 propionyl-CoA carboxylase; propionyl-CoA carboxylase 2661677 4659490 Sputw3181_2307 Shewanella sp. W3-18-1 propionyl-CoA carboxylase YP_963685.1 2660070 D 351745 CDS YP_963686.1 120599112 4659493 2661739..2662605 1 NC_008750.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO1895 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 2662605 4659493 Sputw3181_2308 Shewanella sp. W3-18-1 enoyl-CoA hydratase/isomerase YP_963686.1 2661739 D 351745 CDS YP_963687.1 120599113 4659502 2662605..2664674 1 NC_008750.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO1894 3-methylcrotonyl-CoA carboxylase alpha subunit; carbamoyl-phosphate synthase subunit L 2664674 4659502 Sputw3181_2309 Shewanella sp. W3-18-1 carbamoyl-phosphate synthase subunit L YP_963687.1 2662605 D 351745 CDS YP_963688.1 120599114 4659534 2664675..2665607 1 NC_008750.1 PFAM: pyruvate carboxyltransferase; KEGG: she:Shewmr4_2326 pyruvate carboxyltransferase; pyruvate carboxyltransferase 2665607 4659534 Sputw3181_2310 Shewanella sp. W3-18-1 pyruvate carboxyltransferase YP_963688.1 2664675 D 351745 CDS YP_963689.1 120599115 4659638 2665661..2666365 1 NC_008750.1 KEGG: son:SO1892 acetate CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2666365 4659638 Sputw3181_2311 Shewanella sp. W3-18-1 3-oxoacid CoA-transferase subunit A YP_963689.1 2665661 D 351745 CDS YP_963690.1 120599116 4659641 2666493..2667149 1 NC_008750.1 KEGG: son:SO1891 3-oxoacid CoA-transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 2667149 4659641 Sputw3181_2312 Shewanella sp. W3-18-1 3-oxoacid CoA-transferase subunit B YP_963690.1 2666493 D 351745 CDS YP_963691.1 120599117 4659556 complement(2667249..2667683) 1 NC_008750.1 hypothetical protein 2667683 4659556 Sputw3181_2313 Shewanella sp. W3-18-1 hypothetical protein YP_963691.1 2667249 R 351745 CDS YP_963692.1 120599118 4659573 2667757..2668779 1 NC_008750.1 hypothetical protein 2668779 4659573 Sputw3181_2314 Shewanella sp. W3-18-1 hypothetical protein YP_963692.1 2667757 D 351745 CDS YP_963693.1 120599119 4659604 2668916..2669518 1 NC_008750.1 PFAM: ThiJ/PfpI domain protein; KEGG: son:SO1887 hypothetical protein; ThiJ/PfpI domain-containing protein 2669518 4659604 Sputw3181_2315 Shewanella sp. W3-18-1 ThiJ/PfpI domain-containing protein YP_963693.1 2668916 D 351745 CDS YP_963694.1 120599120 4660271 2669557..2669874 1 NC_008750.1 KEGG: shm:Shewmr7_2405 hypothetical protein; hypothetical protein 2669874 4660271 Sputw3181_2316 Shewanella sp. W3-18-1 hypothetical protein YP_963694.1 2669557 D 351745 CDS YP_963695.1 120599121 4660201 2670067..2670825 1 NC_008750.1 PFAM: protein of unknown function DUF81; KEGG: she:Shewmr4_2333 protein of unknown function DUF81; hypothetical protein 2670825 4660201 Sputw3181_2317 Shewanella sp. W3-18-1 hypothetical protein YP_963695.1 2670067 D 351745 CDS YP_963696.1 120599122 4660237 2670924..2672108 1 NC_008750.1 PFAM: glucose sorbosone dehydrogenase; KEGG: ilo:IL2579 glucose dehydrogenase, putative; glucose sorbosone dehydrogenase 2672108 4660237 Sputw3181_2318 Shewanella sp. W3-18-1 glucose sorbosone dehydrogenase YP_963696.1 2670924 D 351745 CDS YP_963697.1 120599123 4659755 2672216..2672656 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_2335 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2672656 4659755 Sputw3181_2319 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_963697.1 2672216 D 351745 CDS YP_963698.1 120599124 4659876 complement(2672790..2675885) 1 NC_008750.1 PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_2409 acriflavin resistance protein; acriflavin resistance protein 2675885 4659876 Sputw3181_2320 Shewanella sp. W3-18-1 acriflavin resistance protein YP_963698.1 2672790 R 351745 CDS YP_963699.1 120599125 4659678 complement(2675882..2676967) 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_2410 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2676967 4659678 Sputw3181_2321 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_963699.1 2675882 R 351745 CDS YP_963700.1 120599126 4659677 complement(2677323..2678420) 1 NC_008750.1 PFAM: NlpBDapX family lipoprotein; KEGG: son:SO1880 lipoprotein-34 NlpB; NlpB/DapX family lipoprotein 2678420 4659677 Sputw3181_2322 Shewanella sp. W3-18-1 NlpB/DapX family lipoprotein YP_963700.1 2677323 R 351745 CDS YP_963701.1 120599127 4659899 complement(2678424..2679308) 1 NC_008750.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2679308 4659899 Sputw3181_2323 Shewanella sp. W3-18-1 dihydrodipicolinate synthase YP_963701.1 2678424 R 351745 CDS YP_963702.1 120599128 4659909 2679481..2680032 1 NC_008750.1 KEGG: son:SO1878 glycine cleavage system transcriptional repressor, putative; glycine cleavage system transcriptional repressor 2680032 4659909 Sputw3181_2324 Shewanella sp. W3-18-1 glycine cleavage system transcriptional repressor YP_963702.1 2679481 D 351745 CDS YP_963703.1 120599129 4659588 2680036..2680503 1 NC_008750.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2680503 bcp 4659588 bcp Shewanella sp. W3-18-1 thioredoxin-dependent thiol peroxidase YP_963703.1 2680036 D 351745 CDS YP_963704.1 120599130 4659927 complement(2680701..2681342) 1 NC_008750.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO2865 L-lysine exporter, putative; lysine exporter protein LysE/YggA 2681342 4659927 Sputw3181_2326 Shewanella sp. W3-18-1 lysine exporter protein LysE/YggA YP_963704.1 2680701 R 351745 CDS YP_963705.1 120599131 4659563 2681454..2682383 1 NC_008750.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 2682383 4659563 Sputw3181_2327 Shewanella sp. W3-18-1 chromosome replication initiation inhibitor protein YP_963705.1 2681454 D 351745 CDS YP_963706.1 120599132 4659960 complement(2682464..2683549) 1 NC_008750.1 PFAM: protein of unknown function UPF0118; KEGG: shm:Shewmr7_2417 protein of unknown function UPF0118; hypothetical protein 2683549 4659960 Sputw3181_2328 Shewanella sp. W3-18-1 hypothetical protein YP_963706.1 2682464 R 351745 CDS YP_963707.1 120599133 4659978 complement(2683727..2683960) 1 NC_008750.1 PFAM: SirA family protein; KEGG: shm:Shewmr7_2418 SirA family protein; SirA family protein 2683960 4659978 Sputw3181_2329 Shewanella sp. W3-18-1 SirA family protein YP_963707.1 2683727 R 351745 CDS YP_963708.1 120599134 4659785 2684088..2685545 1 NC_008750.1 PFAM: peptidase M48, Ste24p; Tetratricopeptide TPR_2 repeat protein; KEGG: shm:Shewmr7_2419 peptidase M48, Ste24p; peptidase M48, Ste24p 2685545 4659785 Sputw3181_2330 Shewanella sp. W3-18-1 peptidase M48, Ste24p YP_963708.1 2684088 D 351745 CDS YP_963709.1 120599135 4660004 2685663..2686013 1 NC_008750.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase; KEGG: son:SO2871 arsenate reductase, putative; arsenate reductase 2686013 4660004 Sputw3181_2331 Shewanella sp. W3-18-1 arsenate reductase YP_963709.1 2685663 D 351745 CDS YP_963710.1 120599136 4660032 2686017..2686439 1 NC_008750.1 KEGG: shm:Shewmr7_2421 hypothetical protein; hypothetical protein 2686439 4660032 Sputw3181_2332 Shewanella sp. W3-18-1 hypothetical protein YP_963710.1 2686017 D 351745 CDS YP_963711.1 120599137 4660074 2686666..2688621 1 NC_008750.1 KEGG: son:SO2876 hypothetical protein; hypothetical protein 2688621 4660074 Sputw3181_2333 Shewanella sp. W3-18-1 hypothetical protein YP_963711.1 2686666 D 351745 CDS YP_963712.1 120599138 4660110 complement(2688703..2689413) 1 NC_008750.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 2689413 4660110 Sputw3181_2334 Shewanella sp. W3-18-1 DNA replication initiation factor YP_963712.1 2688703 R 351745 CDS YP_963713.1 120599139 4660121 complement(2689502..2690593) 1 NC_008750.1 KEGG: she:Shewmr4_1575 hypothetical protein; hypothetical protein 2690593 4660121 Sputw3181_2335 Shewanella sp. W3-18-1 hypothetical protein YP_963713.1 2689502 R 351745 CDS YP_963714.1 120599140 4660139 2690799..2692037 1 NC_008750.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: she:Shewmr4_1574 uracil-xanthine permease; uracil-xanthine permease 2692037 4660139 Sputw3181_2336 Shewanella sp. W3-18-1 uracil-xanthine permease YP_963714.1 2690799 D 351745 CDS YP_963715.1 120599141 4660161 complement(2692137..2692469) 1 NC_008750.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: shm:Shewmr7_1648 glutaredoxin-like protein; glutaredoxin-like protein 2692469 4660161 Sputw3181_2337 Shewanella sp. W3-18-1 glutaredoxin-like protein YP_963715.1 2692137 R 351745 CDS YP_963716.1 120599142 4660170 2692695..2693279 1 NC_008750.1 PFAM: manganese and iron superoxide dismutase; KEGG: shm:Shewmr7_1647 superoxide dismutase; superoxide dismutase 2693279 4660170 Sputw3181_2338 Shewanella sp. W3-18-1 superoxide dismutase YP_963716.1 2692695 D 351745 CDS YP_963717.1 120599143 4660181 2693530..2695464 1 NC_008750.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: shm:Shewmr7_1646 putative serine protein kinase, PrkA; putative serine protein kinase PrkA 2695464 4660181 Sputw3181_2339 Shewanella sp. W3-18-1 putative serine protein kinase PrkA YP_963717.1 2693530 D 351745 CDS YP_963718.1 120599144 4660238 2695525..2696799 1 NC_008750.1 PFAM: protein of unknown function DUF444; KEGG: shm:Shewmr7_1645 protein of unknown function DUF444; hypothetical protein 2696799 4660238 Sputw3181_2340 Shewanella sp. W3-18-1 hypothetical protein YP_963718.1 2695525 D 351745 CDS YP_963719.1 120599145 4660264 2696809..2698326 1 NC_008750.1 PFAM: SpoVR family protein; KEGG: son:SO2884 hypothetical protein; SpoVR family protein 2698326 4660264 Sputw3181_2341 Shewanella sp. W3-18-1 SpoVR family protein YP_963719.1 2696809 D 351745 CDS YP_963720.1 120599146 4660274 complement(2698412..2699155) 1 NC_008750.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 2699155 4660274 Sputw3181_2342 Shewanella sp. W3-18-1 fatty acid metabolism regulator YP_963720.1 2698412 R 351745 CDS YP_963721.1 120599147 4660480 2699442..2701028 1 NC_008750.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 2701028 nhaB 4660480 nhaB Shewanella sp. W3-18-1 sodium/proton antiporter YP_963721.1 2699442 D 351745 CDS YP_963722.1 120599148 4660489 2701088..2701654 1 NC_008750.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 2701654 4660489 Sputw3181_2344 Shewanella sp. W3-18-1 disulfide bond formation protein B YP_963722.1 2701088 D 351745 CDS YP_963723.1 120599149 4660286 2701791..2704430 1 NC_008750.1 KEGG: she:Shewmr4_1565 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 2704430 4660286 Sputw3181_2345 Shewanella sp. W3-18-1 putative PAS/PAC sensor protein YP_963723.1 2701791 D 351745 CDS YP_963724.1 120599150 4660670 complement(2704532..2706244) 1 NC_008750.1 activates fatty acids by binding to coenzyme A; AMP-binding protein 2706244 4660670 Sputw3181_2346 Shewanella sp. W3-18-1 AMP-binding protein YP_963724.1 2704532 R 351745 CDS YP_963725.1 120599151 4660674 complement(2706384..2706764) 1 NC_008750.1 KEGG: son:SO1970 hypothetical protein; hypothetical protein 2706764 4660674 Sputw3181_2347 Shewanella sp. W3-18-1 hypothetical protein YP_963725.1 2706384 R 351745 CDS YP_963726.1 120599152 4660781 2707051..2707512 1 NC_008750.1 PFAM: protein of unknown function DUF55; KEGG: son:SO1969 hypothetical protein; hypothetical protein 2707512 4660781 Sputw3181_2348 Shewanella sp. W3-18-1 hypothetical protein YP_963726.1 2707051 D 351745 CDS YP_963727.1 120599153 4660798 2707598..2707936 1 NC_008750.1 KEGG: shm:Shewmr7_2360 hypothetical protein; hypothetical protein 2707936 4660798 Sputw3181_2349 Shewanella sp. W3-18-1 hypothetical protein YP_963727.1 2707598 D 351745 CDS YP_963728.1 120599154 4660819 2708247..2709512 1 NC_008750.1 KEGG: son:SO1967 hypothetical protein; hypothetical protein 2709512 4660819 Sputw3181_2350 Shewanella sp. W3-18-1 hypothetical protein YP_963728.1 2708247 D 351745 CDS YP_963729.1 120599155 4660825 2709924..2712779 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_2471 TonB-dependent receptor; TonB-dependent receptor 2712779 4660825 Sputw3181_2351 Shewanella sp. W3-18-1 TonB-dependent receptor YP_963729.1 2709924 D 351745 CDS YP_963730.1 120599156 4660887 complement(2712874..2713668) 1 NC_008750.1 PFAM: protein of unknown function DUF124; KEGG: she:Shewmr4_2289 protein of unknown function DUF124; hypothetical protein 2713668 4660887 Sputw3181_2352 Shewanella sp. W3-18-1 hypothetical protein YP_963730.1 2712874 R 351745 CDS YP_963731.1 120599157 4660933 complement(2713869..2714783) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1965 transcriptional regulator, LysR family; LysR family transcriptional regulator 2714783 4660933 Sputw3181_2353 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_963731.1 2713869 R 351745 CDS YP_963732.1 120599158 4661006 2714976..2716136 1 NC_008750.1 PFAM: homogentisate 1,2-dioxygenase; KEGG: shm:Shewmr7_2363 homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygenase 2716136 4661006 Sputw3181_2354 Shewanella sp. W3-18-1 homogentisate 1,2-dioxygenase YP_963732.1 2714976 D 351745 CDS YP_963733.1 120599159 4660937 2716213..2717253 1 NC_008750.1 KEGG: son:SO1962 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2717253 4660937 Sputw3181_2355 Shewanella sp. W3-18-1 4-hydroxyphenylpyruvate dioxygenase YP_963733.1 2716213 D 351745 CDS YP_963734.1 120599160 4661039 2717415..2718038 1 NC_008750.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: she:Shewmr4_2295 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 2718038 4661039 Sputw3181_2356 Shewanella sp. W3-18-1 lysine exporter protein LysE/YggA YP_963734.1 2717415 D 351745 CDS YP_963735.1 120599161 4660950 complement(2718113..2719408) 1 NC_008750.1 PFAM: protein of unknown function DUF482; KEGG: son:SO1953 hypothetical protein; hypothetical protein 2719408 4660950 Sputw3181_2357 Shewanella sp. W3-18-1 hypothetical protein YP_963735.1 2718113 R 351745 CDS YP_963736.1 120599162 4657768 2719517..2721256 1 NC_008750.1 KEGG: shm:Shewmr7_2369 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2721256 4657768 Sputw3181_2358 Shewanella sp. W3-18-1 gamma-glutamyltransferase YP_963736.1 2719517 D 351745 CDS YP_963737.1 120599163 4661811 complement(2721532..2722044) 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_2373 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2722044 4661811 Sputw3181_2359 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_963737.1 2721532 R 351745 CDS YP_963738.1 120599164 4661823 complement(2722066..2722614) 1 NC_008750.1 PFAM: nitroreductase; KEGG: shm:Shewmr7_2374 nitroreductase; nitroreductase 2722614 4661823 Sputw3181_2360 Shewanella sp. W3-18-1 nitroreductase YP_963738.1 2722066 R 351745 CDS YP_963739.1 120599165 4661678 complement(2722811..2723692) 1 NC_008750.1 KEGG: son:SO2711 hypothetical protein; hypothetical protein 2723692 4661678 Sputw3181_2361 Shewanella sp. W3-18-1 hypothetical protein YP_963739.1 2722811 R 351745 CDS YP_963740.1 120599166 4661587 complement(2723891..2724994) 1 NC_008750.1 PFAM: aminoglycoside phosphotransferase; KEGG: son:SO2712 hypothetical protein; aminoglycoside phosphotransferase 2724994 4661587 Sputw3181_2362 Shewanella sp. W3-18-1 aminoglycoside phosphotransferase YP_963740.1 2723891 R 351745 CDS YP_963741.1 120599167 4661168 complement(2725025..2725726) 1 NC_008750.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: shm:Shewmr7_2378 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 2725726 4661168 Sputw3181_2363 Shewanella sp. W3-18-1 nicotinamide mononucleotide transporter PnuC YP_963741.1 2725025 R 351745 CDS YP_963742.1 120599168 4660406 complement(2725756..2726016) 1 NC_008750.1 KEGG: son:SO2714 hypothetical protein; hypothetical protein 2726016 4660406 Sputw3181_2364 Shewanella sp. W3-18-1 hypothetical protein YP_963742.1 2725756 R 351745 CDS YP_963743.1 120599169 4660403 complement(2726119..2728308) 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2715 TonB-dependent receptor; TonB-dependent receptor 2728308 4660403 Sputw3181_2365 Shewanella sp. W3-18-1 TonB-dependent receptor YP_963743.1 2726119 R 351745 CDS YP_963744.1 120599170 4660709 2728713..2729393 1 NC_008750.1 PFAM: cyclic nucleotide-binding; KEGG: son:SO2717 cyclic nucleotide binding protein, putative; cyclic nucleotide-binding protein 2729393 4660709 Sputw3181_2366 Shewanella sp. W3-18-1 cyclic nucleotide-binding protein YP_963744.1 2728713 D 351745 CDS YP_963745.1 120599171 4660396 complement(2729470..2730624) 1 NC_008750.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2718 hypothetical protein; hypothetical protein 2730624 4660396 Sputw3181_2367 Shewanella sp. W3-18-1 hypothetical protein YP_963745.1 2729470 R 351745 CDS YP_963746.1 120599172 4660390 complement(2730675..2731379) 1 NC_008750.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 2731379 4660390 Sputw3181_2368 Shewanella sp. W3-18-1 purine nucleoside phosphorylase YP_963746.1 2730675 R 351745 CDS YP_963747.1 120599173 4660640 2731669..2731896 1 NC_008750.1 KEGG: she:Shewmr4_1960 hypothetical protein; hypothetical protein 2731896 4660640 Sputw3181_2369 Shewanella sp. W3-18-1 hypothetical protein YP_963747.1 2731669 D 351745 CDS YP_963748.1 120599174 4660366 complement(2731934..2732329) 1 NC_008750.1 PFAM: protein of unknown function DUF1425; KEGG: son:SO2720 hypothetical protein; hypothetical protein 2732329 4660366 Sputw3181_2370 Shewanella sp. W3-18-1 hypothetical protein YP_963748.1 2731934 R 351745 CDS YP_963749.1 120599175 4660364 complement(2732463..2733470) 1 NC_008750.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2383 uncharacterized domain 1; hypothetical protein 2733470 4660364 Sputw3181_2371 Shewanella sp. W3-18-1 hypothetical protein YP_963749.1 2732463 R 351745 CDS YP_963750.1 120599176 4660359 complement(2733467..2733823) 1 NC_008750.1 PFAM: histidine triad (HIT) protein; KEGG: shm:Shewmr7_2384 histidine triad (HIT) protein; histidine triad (HIT) protein 2733823 4660359 Sputw3181_2372 Shewanella sp. W3-18-1 histidine triad (HIT) protein YP_963750.1 2733467 R 351745 CDS YP_963751.1 120599177 4660328 2733968..2735746 1 NC_008750.1 PFAM: peptidase M61 domain protein; KEGG: shm:Shewmr7_2385 peptidase M61 domain protein; peptidase M61 domain-containing protein 2735746 4660328 Sputw3181_2373 Shewanella sp. W3-18-1 peptidase M61 domain-containing protein YP_963751.1 2733968 D 351745 CDS YP_963752.1 120599178 4660323 complement(2735843..2736196) 1 NC_008750.1 KEGG: shm:Shewmr7_1637 hypothetical protein; hypothetical protein 2736196 4660323 Sputw3181_2374 Shewanella sp. W3-18-1 hypothetical protein YP_963752.1 2735843 R 351745 CDS YP_963753.1 120599179 4660493 complement(2736374..2736949) 1 NC_008750.1 PFAM: YceI family protein; KEGG: shm:Shewmr7_1636 YceI family protein; hypothetical protein 2736949 4660493 Sputw3181_2375 Shewanella sp. W3-18-1 hypothetical protein YP_963753.1 2736374 R 351745 CDS YP_963754.1 120599180 4660473 complement(2737070..2737537) 1 NC_008750.1 PFAM: protein of unknown function DUF188; KEGG: she:Shewmr4_1560 protein of unknown function DUF188; hypothetical protein 2737537 4660473 Sputw3181_2376 Shewanella sp. W3-18-1 hypothetical protein YP_963754.1 2737070 R 351745 CDS YP_963755.1 120599181 4660218 complement(2737652..2738290) 1 NC_008750.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 2738290 4660218 Sputw3181_2377 Shewanella sp. W3-18-1 pyridoxamine 5'-phosphate oxidase YP_963755.1 2737652 R 351745 CDS YP_963756.1 120599182 4660456 complement(2738479..2739450) 1 NC_008750.1 PFAM: S-adenosylmethionine decarboxylase; KEGG: son:SO1871 S-adenosylmethionine decarboxylase proenzyme, putative; adenosylmethionine decarboxylase 2739450 4660456 Sputw3181_2378 Shewanella sp. W3-18-1 adenosylmethionine decarboxylase YP_963756.1 2738479 R 351745 CDS YP_963757.1 120599183 4660070 complement(2739580..2741493) 1 NC_008750.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 2741493 4660070 Sputw3181_2379 Shewanella sp. W3-18-1 arginine decarboxylase YP_963757.1 2739580 R 351745 CDS YP_963758.1 120599184 4660061 2742664..2743506 1 NC_008750.1 KEGG: she:Shewmr4_1555 hypothetical protein; hypothetical protein 2743506 4660061 Sputw3181_2380 Shewanella sp. W3-18-1 hypothetical protein YP_963758.1 2742664 D 351745 CDS YP_963759.1 120599185 4659832 2743632..2744297 1 NC_008750.1 PFAM: protein of unknown function DUF480; KEGG: son:SO1867 hypothetical protein; hypothetical protein 2744297 4659832 Sputw3181_2381 Shewanella sp. W3-18-1 hypothetical protein YP_963759.1 2743632 D 351745 CDS YP_963760.1 120599186 4659985 2744370..2745200 1 NC_008750.1 KEGG: son:SO1866 hypothetical protein; hypothetical protein 2745200 4659985 Sputw3181_2382 Shewanella sp. W3-18-1 hypothetical protein YP_963760.1 2744370 D 351745 CDS YP_963761.1 120599187 4659804 2745197..2746123 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1865 ABC transporter, ATP-binding protein; ABC transporter-like protein 2746123 4659804 Sputw3181_2383 Shewanella sp. W3-18-1 ABC transporter-like protein YP_963761.1 2745197 D 351745 CDS YP_963762.1 120599188 4660373 complement(2747427..2747975) 1 NC_008750.1 KEGG: she:Shewmr4_1549 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2747975 4660373 Sputw3181_2384 Shewanella sp. W3-18-1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_963762.1 2747427 R 351745 CDS YP_963763.1 120599189 4659966 complement(2748023..2749852) 1 NC_008750.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2749852 uvrC 4659966 uvrC Shewanella sp. W3-18-1 excinuclease ABC subunit C YP_963763.1 2748023 R 351745 CDS YP_963764.1 120599190 4659942 complement(2749919..2750599) 1 NC_008750.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 2750599 4659942 Sputw3181_2386 Shewanella sp. W3-18-1 response regulator YP_963764.1 2749919 R 351745 CDS YP_963765.1 120599191 4660352 2751736..2753469 1 NC_008750.1 KEGG: shm:Shewmr7_1613 conserved hypothetical ATP-dependent protease; ATP-dependent protease 2753469 4660352 Sputw3181_2387 Shewanella sp. W3-18-1 ATP-dependent protease YP_963765.1 2751736 D 351745 CDS YP_963766.1 120599192 4661331 2753544..2754059 1 NC_008750.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 2754059 4661331 Sputw3181_2388 Shewanella sp. W3-18-1 3-hydroxydecanoyl-ACP dehydratase YP_963766.1 2753544 D 351745 CDS YP_963767.1 120599193 4659133 complement(2754167..2754343) 1 NC_008750.1 PFAM: ribosome modulation factor; KEGG: shm:Shewmr7_1611 ribosome modulation factor; ribosome modulation factor 2754343 4659133 Sputw3181_2389 Shewanella sp. W3-18-1 ribosome modulation factor YP_963767.1 2754167 R 351745 CDS YP_963768.1 120599194 4659397 complement(2754530..2756362) 1 NC_008750.1 KEGG: shm:Shewmr7_1610 hypothetical protein; hypothetical protein 2756362 4659397 Sputw3181_2390 Shewanella sp. W3-18-1 hypothetical protein YP_963768.1 2754530 R 351745 CDS YP_963769.1 120599195 4659117 complement(2756391..2758316) 1 NC_008750.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 2758316 4659117 Sputw3181_2391 Shewanella sp. W3-18-1 ABC transporter ATPase YP_963769.1 2756391 R 351745 CDS YP_963770.1 120599196 4659115 complement(2758318..2758578) 1 NC_008750.1 PFAM: glutaredoxin; glutaredoxin 2; KEGG: she:Shewmr4_1541 glutaredoxin 2; glutaredoxin 2758578 4659115 Sputw3181_2392 Shewanella sp. W3-18-1 glutaredoxin YP_963770.1 2758318 R 351745 CDS YP_963771.1 120599197 4659114 complement(2758571..2760700) 1 NC_008750.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 2760700 rlmL 4659114 rlmL Shewanella sp. W3-18-1 23S rRNA m(2)G2445 methyltransferase YP_963771.1 2758571 R 351745 CDS YP_963772.1 120599198 4660428 2762109..2762393 1 NC_008750.1 PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO1850 DnaJ domain protein; heat shock protein DnaJ domain-containing protein 2762393 4660428 Sputw3181_2394 Shewanella sp. W3-18-1 heat shock protein DnaJ domain-containing protein YP_963772.1 2762109 D 351745 CDS YP_963773.1 120599199 4659325 2762416..2762946 1 NC_008750.1 KEGG: son:SO1849 hypothetical protein; hypothetical protein 2762946 4659325 Sputw3181_2395 Shewanella sp. W3-18-1 hypothetical protein YP_963773.1 2762416 D 351745 CDS YP_963774.1 120599200 4659323 2762946..2763704 1 NC_008750.1 KEGG: she:Shewmr4_1537 hypothetical protein; hypothetical protein 2763704 4659323 Sputw3181_2396 Shewanella sp. W3-18-1 hypothetical protein YP_963774.1 2762946 D 351745 CDS YP_963775.1 120599201 4659306 2763716..2764612 1 NC_008750.1 KEGG: shm:Shewmr7_1603 hypothetical protein; hypothetical protein 2764612 4659306 Sputw3181_2397 Shewanella sp. W3-18-1 hypothetical protein YP_963775.1 2763716 D 351745 CDS YP_963776.1 120599202 4659105 complement(2764822..2765214) 1 NC_008750.1 KEGG: son:SO1845 hypothetical protein; hypothetical protein 2765214 4659105 Sputw3181_2398 Shewanella sp. W3-18-1 hypothetical protein YP_963776.1 2764822 R 351745 CDS YP_963777.1 120599203 4659100 complement(2766220..2767980) 1 NC_008750.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: ava:Ava_3254 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 2767980 4659100 Sputw3181_2399 Shewanella sp. W3-18-1 RNA-directed DNA polymerase YP_963777.1 2766220 R 351745 CDS YP_963778.1 120599204 4659063 complement(2768856..2771690) 1 NC_008750.1 PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: son:SO1844 extracellular nuclease, putative; endonuclease/exonuclease/phosphatase 2771690 4659063 Sputw3181_2400 Shewanella sp. W3-18-1 endonuclease/exonuclease/phosphatase YP_963778.1 2768856 R 351745 CDS YP_963779.1 120599205 4659072 complement(2771984..2772487) 1 NC_008750.1 KEGG: shm:Shewmr7_1600 hypothetical protein; hypothetical protein 2772487 4659072 Sputw3181_2401 Shewanella sp. W3-18-1 hypothetical protein YP_963779.1 2771984 R 351745 CDS YP_963780.1 120599206 4658999 complement(2772487..2773650) 1 NC_008750.1 KEGG: shm:Shewmr7_1599 hypothetical protein; hypothetical protein 2773650 4658999 Sputw3181_2402 Shewanella sp. W3-18-1 hypothetical protein YP_963780.1 2772487 R 351745 CDS YP_963781.1 120599207 4659033 complement(2773637..2774728) 1 NC_008750.1 KEGG: son:SO1840 hypothetical protein; hypothetical protein 2774728 4659033 Sputw3181_2403 Shewanella sp. W3-18-1 hypothetical protein YP_963781.1 2773637 R 351745 CDS YP_963782.1 120599208 4659035 2774865..2775671 1 NC_008750.1 KEGG: son:SO1839 hypothetical protein; hypothetical protein 2775671 4659035 Sputw3181_2404 Shewanella sp. W3-18-1 hypothetical protein YP_963782.1 2774865 D 351745 CDS YP_963783.1 120599209 4659156 complement(2775684..2776082) 1 NC_008750.1 KEGG: shm:Shewmr7_1597 hypothetical protein; hypothetical protein 2776082 4659156 Sputw3181_2405 Shewanella sp. W3-18-1 hypothetical protein YP_963783.1 2775684 R 351745 CDS YP_963784.1 120599210 4658852 complement(2776238..2776633) 1 NC_008750.1 KEGG: shm:Shewmr7_1596 hypothetical protein; hypothetical protein 2776633 4658852 Sputw3181_2406 Shewanella sp. W3-18-1 hypothetical protein YP_963784.1 2776238 R 351745 CDS YP_963785.1 120599211 4658837 complement(2776671..2777135) 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1595 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2777135 4658837 Sputw3181_2407 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_963785.1 2776671 R 351745 CDS YP_963786.1 120599212 4658611 complement(2777168..2777770) 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1594 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2777770 4658611 Sputw3181_2408 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_963786.1 2777168 R 351745 CDS YP_963787.1 120599213 4658813 complement(2778124..2778747) 1 NC_008750.1 SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: shm:Shewmr7_1593 prolyl 4-hydroxylase, alpha subunit; prolyl 4-hydroxylase subunit alpha 2778747 4658813 Sputw3181_2409 Shewanella sp. W3-18-1 prolyl 4-hydroxylase subunit alpha YP_963787.1 2778124 R 351745 CDS YP_963788.1 120599214 4658780 complement(2778966..2781110) 1 NC_008750.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: shm:Shewmr7_1592 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp 2781110 4658780 Sputw3181_2410 Shewanella sp. W3-18-1 peptidyl-dipeptidase Dcp YP_963788.1 2778966 R 351745 CDS YP_963789.1 120599215 4658581 2781818..2783884 1 NC_008750.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein 2783884 cpdB 4658581 cpdB Shewanella sp. W3-18-1 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein YP_963789.1 2781818 D 351745 CDS YP_963790.1 120599216 4661279 2784088..2784843 1 NC_008750.1 KEGG: shm:Shewmr7_1590 hypothetical protein; hypothetical protein 2784843 4661279 Sputw3181_2412 Shewanella sp. W3-18-1 hypothetical protein YP_963790.1 2784088 D 351745 CDS YP_963791.1 120599217 4659913 complement(2785757..2786506) 1 NC_008750.1 TIGRFAM: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_2438 hypothetical protein; hypothetical protein 2786506 4659913 Sputw3181_2413 Shewanella sp. W3-18-1 hypothetical protein YP_963791.1 2785757 R 351745 CDS YP_963792.1 120599218 4658730 complement(2786531..2787067) 1 NC_008750.1 TIGRFAM: OmpA domain protein; PFAM: OmpA/MotB domain protein; KEGG: shm:Shewmr7_2439 OmpA/MotB domain protein; OmpA domain-containing protein 2787067 4658730 Sputw3181_2414 Shewanella sp. W3-18-1 OmpA domain-containing protein YP_963792.1 2786531 R 351745 CDS YP_963793.1 120599219 4658640 complement(2787114..2788442) 1 NC_008750.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2788442 tolB 4658640 tolB Shewanella sp. W3-18-1 translocation protein TolB YP_963793.1 2787114 R 351745 CDS YP_963794.1 120599220 4658634 complement(2788452..2789441) 1 NC_008750.1 PFAM: TolA family protein; KEGG: she:Shewmr4_2369 TolA family protein; TolA family protein 2789441 4658634 Sputw3181_2416 Shewanella sp. W3-18-1 TolA family protein YP_963794.1 2788452 R 351745 CDS YP_963795.1 120599221 4658158 complement(2789442..2789876) 1 NC_008750.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: she:Shewmr4_2370 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2789876 4658158 Sputw3181_2417 Shewanella sp. W3-18-1 biopolymer transport protein ExbD/TolR YP_963795.1 2789442 R 351745 CDS YP_963796.1 120599222 4660953 complement(2789876..2790562) 1 NC_008750.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: shm:Shewmr7_2443 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2790562 4660953 Sputw3181_2418 Shewanella sp. W3-18-1 MotA/TolQ/ExbB proton channel YP_963796.1 2789876 R 351745 CDS YP_963797.1 120599223 4658113 complement(2790552..2790953) 1 NC_008750.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2444 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 2790953 4658113 Sputw3181_2419 Shewanella sp. W3-18-1 4-hydroxybenzoyl-CoA thioesterase YP_963797.1 2790552 R 351745 CDS YP_963798.1 120599224 4658089 complement(2791123..2793312) 1 NC_008750.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: shm:Shewmr7_2445 prolyl oligopeptidase; prolyl oligopeptidase 2793312 4658089 Sputw3181_2420 Shewanella sp. W3-18-1 prolyl oligopeptidase YP_963798.1 2791123 R 351745 CDS YP_963799.1 120599225 4657712 complement(2793869..2794738) 1 NC_008750.1 PFAM: OmpA/MotB domain protein; KEGG: she:Shewmr4_2374 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2794738 4657712 Sputw3181_2421 Shewanella sp. W3-18-1 OmpA/MotB domain-containing protein YP_963799.1 2793869 R 351745 CDS YP_963800.1 120599226 4657996 2794881..2795552 1 NC_008750.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 2795552 4657996 Sputw3181_2422 Shewanella sp. W3-18-1 ribonuclease T YP_963800.1 2794881 D 351745 CDS YP_963801.1 120599227 4657995 complement(2795635..2796240) 1 NC_008750.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_2448 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 2796240 4657995 Sputw3181_2423 Shewanella sp. W3-18-1 alkyl hydroperoxide reductase YP_963801.1 2795635 R 351745 CDS YP_963802.1 120599228 4657982 2796627..2797946 1 NC_008750.1 PFAM: Gluconate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO2757 membrane protein, putative; Na+/H+ antiporter NhaC 2797946 4657982 Sputw3181_2424 Shewanella sp. W3-18-1 Na+/H+ antiporter NhaC YP_963802.1 2796627 D 351745 CDS YP_963803.1 120599229 4657681 complement(2798072..2798698) 1 NC_008750.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2798698 upp 4657681 upp Shewanella sp. W3-18-1 uracil phosphoribosyltransferase YP_963803.1 2798072 R 351745 CDS YP_963804.1 120599230 4657857 2799031..2800068 1 NC_008750.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2800068 4657857 Sputw3181_2426 Shewanella sp. W3-18-1 phosphoribosylaminoimidazole synthetase YP_963804.1 2799031 D 351745 CDS YP_963805.1 120599231 4657830 2800068..2800712 1 NC_008750.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2800712 purN 4657830 purN Shewanella sp. W3-18-1 phosphoribosylglycinamide formyltransferase YP_963805.1 2800068 D 351745 CDS YP_963806.1 120599232 4657789 2800869..2801615 1 NC_008750.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO2762 nagD protein; UMP phosphatase 2801615 4657789 Sputw3181_2428 Shewanella sp. W3-18-1 UMP phosphatase YP_963806.1 2800869 D 351745 CDS YP_963807.1 120599233 4657793 2801815..2803488 1 NC_008750.1 PFAM: peptidase M28; KEGG: shm:Shewmr7_2455 peptidase M28; peptidase M28 2803488 4657793 Sputw3181_2429 Shewanella sp. W3-18-1 peptidase M28 YP_963807.1 2801815 D 351745 CDS YP_963808.1 120599234 4658366 2804071..2805735 1 NC_008750.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 2805735 asnB 4658366 asnB Shewanella sp. W3-18-1 asparagine synthetase B YP_963808.1 2804071 D 351745 CDS YP_963809.1 120599235 4658432 complement(2805928..2807097) 1 NC_008750.1 PFAM: Patatin; KEGG: sfr:Sfri_0718 patatin; patatin 2807097 4658432 Sputw3181_2431 Shewanella sp. W3-18-1 patatin YP_963809.1 2805928 R 351745 CDS YP_963810.1 120599236 4657796 complement(2807340..2809553) 1 NC_008750.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_2386 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2809553 4657796 Sputw3181_2432 Shewanella sp. W3-18-1 TonB-dependent siderophore receptor YP_963810.1 2807340 R 351745 CDS YP_963811.1 120599237 4657827 complement(2809863..2811653) 1 NC_008750.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: she:Shewmr4_2387 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2811653 4657827 Sputw3181_2433 Shewanella sp. W3-18-1 acyl-CoA dehydrogenase domain-containing protein YP_963811.1 2809863 R 351745 CDS YP_963812.1 120599238 4657866 2811901..2812749 1 NC_008750.1 PFAM: Aldose 1-epimerase; KEGG: shm:Shewmr7_2460 aldose 1-epimerase; aldose 1-epimerase 2812749 4657866 Sputw3181_2434 Shewanella sp. W3-18-1 aldose 1-epimerase YP_963812.1 2811901 D 351745 CDS YP_963813.1 120599239 4657896 complement(2812868..2813743) 1 NC_008750.1 PFAM: oxidoreductase domain protein; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: she:Shewmr4_2391 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase 2813743 4657896 Sputw3181_2435 Shewanella sp. W3-18-1 6-phosphogluconate dehydrogenase YP_963813.1 2812868 R 351745 CDS YP_963814.1 120599240 4657688 complement(2814051..2814530) 1 NC_008750.1 PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2462 thioesterase superfamily protein; thioesterase superfamily protein 2814530 4657688 Sputw3181_2436 Shewanella sp. W3-18-1 thioesterase superfamily protein YP_963814.1 2814051 R 351745 CDS YP_963815.1 120599241 4657964 complement(2814649..2815017) 1 NC_008750.1 KEGG: shm:Shewmr7_2463 hypothetical protein; hypothetical protein 2815017 4657964 Sputw3181_2437 Shewanella sp. W3-18-1 hypothetical protein YP_963815.1 2814649 R 351745 CDS YP_963816.1 120599242 4658029 complement(2815181..2816419) 1 NC_008750.1 PFAM: beta-ketoacyl synthase; KEGG: son:SO2774 3-oxoacyl-(acyl-carrier-protein) synthase II; beta-ketoacyl synthase 2816419 4658029 Sputw3181_2438 Shewanella sp. W3-18-1 beta-ketoacyl synthase YP_963816.1 2815181 R 351745 CDS YP_963817.1 120599243 4658099 complement(2816645..2816878) 1 NC_008750.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2816878 acpP 4658099 acpP Shewanella sp. W3-18-1 acyl carrier protein YP_963817.1 2816645 R 351745 CDS YP_963818.1 120599244 4658141 complement(2817043..2817789) 1 NC_008750.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: son:SO2776 3-oxoacyl-[acyl-carrier protein] reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 2817789 4658141 Sputw3181_2440 Shewanella sp. W3-18-1 3-oxoacyl-(acyl-carrier-protein) reductase YP_963818.1 2817043 R 351745 CDS YP_963819.1 120599245 4658187 complement(2817799..2818725) 1 NC_008750.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: shm:Shewmr7_2467 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 2818725 4658187 Sputw3181_2441 Shewanella sp. W3-18-1 malonyl CoA-acyl carrier protein transacylase YP_963819.1 2817799 R 351745 CDS YP_963820.1 120599246 4658290 complement(2818813..2819772) 1 NC_008750.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 2819772 4658290 Sputw3181_2442 Shewanella sp. W3-18-1 3-oxoacyl-ACP synthase YP_963820.1 2818813 R 351745 CDS YP_963821.1 120599247 4658354 complement(2819782..2820810) 1 NC_008750.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 2820810 4658354 Sputw3181_2443 Shewanella sp. W3-18-1 putative glycerol-3-phosphate acyltransferase PlsX YP_963821.1 2819782 R 351745 CDS YP_963822.1 120599248 4658990 complement(2820826..2820996) 1 NC_008750.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2820996 rpmF 4658990 rpmF Shewanella sp. W3-18-1 50S ribosomal protein L32 YP_963822.1 2820826 R 351745 CDS YP_963823.1 120599249 4658450 complement(2821014..2821538) 1 NC_008750.1 PFAM: protein of unknown function DUF177; KEGG: shm:Shewmr7_2471 protein of unknown function DUF177; hypothetical protein 2821538 4658450 Sputw3181_2445 Shewanella sp. W3-18-1 hypothetical protein YP_963823.1 2821014 R 351745 CDS YP_963824.1 120599250 4658439 2821771..2822385 1 NC_008750.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO2782 maf protein, putative; maf protein 2822385 4658439 Sputw3181_2446 Shewanella sp. W3-18-1 maf protein YP_963824.1 2821771 D 351745 CDS YP_963825.1 120599251 4658388 complement(2822549..2823265) 1 NC_008750.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: she:Shewmr4_2403 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 2823265 4658388 Sputw3181_2447 Shewanella sp. W3-18-1 HAD family hydrolase YP_963825.1 2822549 R 351745 CDS YP_963826.1 120599252 4658382 complement(2823288..2824280) 1 NC_008750.1 KEGG: shm:Shewmr7_2474 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 2824280 4658382 Sputw3181_2448 Shewanella sp. W3-18-1 RluA family pseudouridine synthase YP_963826.1 2823288 R 351745 CDS YP_963827.1 120599253 4658750 2824789..2828175 1 NC_008750.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: she:Shewmr4_2405 ribonuclease, Rne/Rng family; ribonuclease 2828175 4658750 Sputw3181_2449 Shewanella sp. W3-18-1 ribonuclease YP_963827.1 2824789 D 351745 CDS YP_963828.1 120599254 4658771 complement(2828884..2829093) 1 NC_008750.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: shm:Shewmr7_2477 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 2829093 4658771 Sputw3181_2450 Shewanella sp. W3-18-1 cold-shock DNA-binding domain-containing protein YP_963828.1 2828884 R 351745 CDS YP_963829.1 120599255 4658799 complement(2829393..2830208) 1 NC_008750.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 2830208 rrmA 4658799 rrmA Shewanella sp. W3-18-1 23S rRNA methyltransferase A YP_963829.1 2829393 R 351745 CDS YP_963830.1 120599256 4658882 complement(2830249..2831049) 1 NC_008750.1 KEGG: son:SO2789 hypothetical protein; hypothetical protein 2831049 4658882 Sputw3181_2452 Shewanella sp. W3-18-1 hypothetical protein YP_963830.1 2830249 R 351745 CDS YP_963831.1 120599257 4658888 2831515..2832057 1 NC_008750.1 KEGG: son:SO2938 hypothetical protein; hypothetical protein 2832057 4658888 Sputw3181_2453 Shewanella sp. W3-18-1 hypothetical protein YP_963831.1 2831515 D 351745 CDS YP_963832.1 120599258 4658923 complement(2832058..2832768) 1 NC_008750.1 KEGG: son:SO2939 hypothetical protein; hypothetical protein 2832768 4658923 Sputw3181_2454 Shewanella sp. W3-18-1 hypothetical protein YP_963832.1 2832058 R 351745 CDS YP_963833.1 120599259 4659007 complement(2832772..2833095) 1 NC_008750.1 hypothetical protein 2833095 4659007 Sputw3181_2455 Shewanella sp. W3-18-1 hypothetical protein YP_963833.1 2832772 R 351745 CDS YP_963834.1 120599260 4659013 complement(2833092..2839295) 1 NC_008750.1 PFAM: Carbohydrate-binding family V/XII; Fibronectin, type III domain protein; KEGG: son:SO2940 prophage LambdaSo, host specificity protein J, putative; carbohydrate-binding family V/XII protein 2839295 4659013 Sputw3181_2456 Shewanella sp. W3-18-1 carbohydrate-binding family V/XII protein YP_963834.1 2833092 R 351745 CDS YP_963835.1 120599261 4659601 complement(2839301..2839951) 1 NC_008750.1 PFAM: bacteriophage lambda tail assembly I; KEGG: son:SO2941 prophage LambdaSo, tail assembly protein I; bacteriophage lambda tail assembly I 2839951 4659601 Sputw3181_2457 Shewanella sp. W3-18-1 bacteriophage lambda tail assembly I YP_963835.1 2839301 R 351745 CDS YP_963836.1 120599262 4659037 complement(2840072..2840962) 1 NC_008750.1 KEGG: sec:SC2612 hypothetical protein; phage protein 2840962 4659037 Sputw3181_2458 Shewanella sp. W3-18-1 phage protein YP_963836.1 2840072 R 351745 CDS YP_963837.1 120599263 4659015 complement(2840959..2841633) 1 NC_008750.1 KEGG: ecs:ECs1200 DNA-binding protein; DNA-binding protein 2841633 4659015 Sputw3181_2459 Shewanella sp. W3-18-1 DNA-binding protein YP_963837.1 2840959 R 351745 CDS YP_963838.1 120599264 4658986 2841911..2842402 1 NC_008750.1 PFAM: Arc domain protein DNA binding domain protein; KEGG: pau:PA14_20290 DNA binding-protein; Arc domain-containing protein 2842402 4658986 Sputw3181_2460 Shewanella sp. W3-18-1 Arc domain-containing protein YP_963838.1 2841911 D 351745 CDS YP_963839.1 120599265 4659240 complement(2842441..2842959) 1 NC_008750.1 KEGG: dvu:DVU0290 lipoprotein, putative; putative lipoprotein 2842959 4659240 Sputw3181_2461 Shewanella sp. W3-18-1 putative lipoprotein YP_963839.1 2842441 R 351745 CDS YP_963840.1 120599266 4659290 complement(2843046..2843759) 1 NC_008750.1 PFAM: NLP/P60 protein; SMART: Mov34/MPN/PAD-1 family protein; KEGG: son:SO2948 prophage LambdaSo, tail assembly protein K, putative; NLP/P60 protein 2843759 4659290 Sputw3181_2462 Shewanella sp. W3-18-1 NLP/P60 protein YP_963840.1 2843046 R 351745 CDS YP_963841.1 120599267 4659352 complement(2843811..2844536) 1 NC_008750.1 PFAM: phage minor tail protein L; KEGG: son:SO2949 prophage LambdaSo, minor tail protein L; phage minor tail protein L 2844536 4659352 Sputw3181_2463 Shewanella sp. W3-18-1 phage minor tail protein L YP_963841.1 2843811 R 351745 CDS YP_963842.1 120599268 4659415 complement(2844529..2844816) 1 NC_008750.1 hypothetical protein 2844816 4659415 Sputw3181_2464 Shewanella sp. W3-18-1 hypothetical protein YP_963842.1 2844529 R 351745 CDS YP_963843.1 120599269 4659465 complement(2844803..2846077) 1 NC_008750.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: ana:alr3497 hypothetical protein; RNA-directed DNA polymerase 2846077 4659465 Sputw3181_2465 Shewanella sp. W3-18-1 RNA-directed DNA polymerase YP_963843.1 2844803 R 351745 CDS YP_963844.1 120599270 4659142 complement(2846074..2846427) 1 NC_008750.1 KEGG: par:Psyc_0448 hypothetical protein; hypothetical protein 2846427 4659142 Sputw3181_2466 Shewanella sp. W3-18-1 hypothetical protein YP_963844.1 2846074 R 351745 CDS YP_963845.1 120599271 4659516 complement(2846487..2847692) 1 NC_008750.1 hypothetical protein 2847692 4659516 Sputw3181_2467 Shewanella sp. W3-18-1 hypothetical protein YP_963845.1 2846487 R 351745 CDS YP_963846.1 120599272 4659540 complement(2847732..2848067) 1 NC_008750.1 PFAM: phage minor tail family protein; KEGG: son:SO2952 prophage LambdaSo, minor tail protein M, putative; phage minor tail family protein 2848067 4659540 Sputw3181_2468 Shewanella sp. W3-18-1 phage minor tail family protein YP_963846.1 2847732 R 351745 CDS YP_963847.1 120599273 4659547 complement(2848071..2848376) 1 NC_008750.1 hypothetical protein 2848376 4659547 Sputw3181_2469 Shewanella sp. W3-18-1 hypothetical protein YP_963847.1 2848071 R 351745 CDS YP_963848.1 120599274 4659657 complement(2848378..2851794) 1 NC_008750.1 TIGRFAM: phage tail tape measure protein, lambda family; PFAM: Prophage tail length tape measure; KEGG: son:SO2953 prophage LambdaSo, tail length tape meausure protein; lambda family phage tail tape measure protein 2851794 4659657 Sputw3181_2470 Shewanella sp. W3-18-1 lambda family phage tail tape measure protein YP_963848.1 2848378 R 351745 CDS YP_963849.1 120599275 4659654 complement(2851875..2852018) 1 NC_008750.1 KEGG: son:SO2954 hypothetical protein; hypothetical protein 2852018 4659654 Sputw3181_2471 Shewanella sp. W3-18-1 hypothetical protein YP_963849.1 2851875 R 351745 CDS YP_963850.1 120599276 4660239 complement(2852057..2852551) 1 NC_008750.1 KEGG: son:SO2955 hypothetical protein; hypothetical protein 2852551 4660239 Sputw3181_2472 Shewanella sp. W3-18-1 hypothetical protein YP_963850.1 2852057 R 351745 CDS YP_963851.1 120599277 4660250 complement(2852641..2853114) 1 NC_008750.1 KEGG: son:SO2956 prophage LambdaSo, major tail protein V, putative; prophage LambdaSo, major tail protein V 2853114 4660250 Sputw3181_2473 Shewanella sp. W3-18-1 prophage LambdaSo, major tail protein V YP_963851.1 2852641 R 351745 CDS YP_963852.1 120599278 4659673 complement(2853205..2853573) 1 NC_008750.1 KEGG: son:SO2957 hypothetical protein; hypothetical protein 2853573 4659673 Sputw3181_2474 Shewanella sp. W3-18-1 hypothetical protein YP_963852.1 2853205 R 351745 CDS YP_963853.1 120599279 4659676 complement(2853570..2854034) 1 NC_008750.1 TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: son:SO2958 hypothetical protein; HK97 family phage protein 2854034 4659676 Sputw3181_2475 Shewanella sp. W3-18-1 HK97 family phage protein YP_963853.1 2853570 R 351745 CDS YP_963854.1 120599280 4659902 complement(2854036..2854398) 1 NC_008750.1 PFAM: phage head-tail adaptor, putative; KEGG: son:SO2960 hypothetical protein; phage head-tail adaptor 2854398 4659902 Sputw3181_2476 Shewanella sp. W3-18-1 phage head-tail adaptor YP_963854.1 2854036 R 351745 CDS YP_963855.1 120599281 4659628 complement(2854398..2854694) 1 NC_008750.1 KEGG: son:SO2961 hypothetical protein; hypothetical protein 2854694 4659628 Sputw3181_2477 Shewanella sp. W3-18-1 hypothetical protein YP_963855.1 2854398 R 351745 CDS YP_963856.1 120599282 4659580 complement(2854716..2855015) 1 NC_008750.1 KEGG: son:SO2962 hypothetical protein; hypothetical protein 2855015 4659580 Sputw3181_2478 Shewanella sp. W3-18-1 hypothetical protein YP_963856.1 2854716 R 351745 CDS YP_963857.1 120599283 4659082 complement(2855112..2856302) 1 NC_008750.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: son:SO2963 prophage LambdaSo, major capsid protein, HK97 family; HK97 family phage major capsid protein 2856302 4659082 Sputw3181_2479 Shewanella sp. W3-18-1 HK97 family phage major capsid protein YP_963857.1 2855112 R 351745 CDS YP_963858.1 120599284 4660020 complement(2856315..2857169) 1 NC_008750.1 PFAM: peptidase S14, ClpP; KEGG: son:SO2964 ClpP protease family protein; peptidase S14, ClpP 2857169 4660020 Sputw3181_2480 Shewanella sp. W3-18-1 peptidase S14, ClpP YP_963858.1 2856315 R 351745 CDS YP_963859.1 120599285 4660112 complement(2857179..2858477) 1 NC_008750.1 TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: son:SO2965 prophage LambdaSo, portal protein, HK97 family; HK97 family phage portal protein 2858477 4660112 Sputw3181_2481 Shewanella sp. W3-18-1 HK97 family phage portal protein YP_963859.1 2857179 R 351745 CDS YP_963860.1 120599286 4660145 complement(2858474..2858635) 1 NC_008750.1 KEGG: son:SO2966 hypothetical protein; hypothetical protein 2858635 4660145 Sputw3181_2482 Shewanella sp. W3-18-1 hypothetical protein YP_963860.1 2858474 R 351745 CDS YP_963861.1 120599287 4660173 complement(2858635..2860380) 1 NC_008750.1 PFAM: phage Terminase; KEGG: son:SO2967 hypothetical phage terminase large subunit; phage terminase 2860380 4660173 Sputw3181_2483 Shewanella sp. W3-18-1 phage terminase YP_963861.1 2858635 R 351745 CDS YP_963862.1 120599288 4660220 complement(2860337..2860849) 1 NC_008750.1 TIGRFAM: phage terminase, small subunit, putative, P27 family; PFAM: phage terminase, small subunit, putative, P27; KEGG: son:SO2968 hypothetical phage terminase, small subunit; P27 family phage terminase small subunit 2860849 4660220 Sputw3181_2484 Shewanella sp. W3-18-1 P27 family phage terminase small subunit YP_963862.1 2860337 R 351745 CDS YP_963863.1 120599289 4660216 complement(2860860..2861189) 1 NC_008750.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: son:SO2969 prophage LambdaSo, holin, putative; HNH endonuclease 2861189 4660216 Sputw3181_2485 Shewanella sp. W3-18-1 HNH endonuclease YP_963863.1 2860860 R 351745 CDS YP_963864.1 120599290 4660921 complement(2861186..2861575) 1 NC_008750.1 KEGG: son:SO2970 hypothetical protein; hypothetical protein 2861575 4660921 Sputw3181_2486 Shewanella sp. W3-18-1 hypothetical protein YP_963864.1 2861186 R 351745 CDS YP_963865.1 120599291 4660982 complement(2861568..2861837) 1 NC_008750.1 KEGG: son:SO2971 hypothetical protein; hypothetical protein 2861837 4660982 Sputw3181_2487 Shewanella sp. W3-18-1 hypothetical protein YP_963865.1 2861568 R 351745 CDS YP_963866.1 120599292 4660441 complement(2861954..2862478) 1 NC_008750.1 KEGG: son:SO2972 hypothetical protein; hypothetical protein 2862478 4660441 Sputw3181_2488 Shewanella sp. W3-18-1 hypothetical protein YP_963866.1 2861954 R 351745 CDS YP_963867.1 120599293 4660240 complement(2862728..2863240) 1 NC_008750.1 KEGG: son:SO2973 prophage LambdaSo, lysozyme, putative; prophage LambdaSo, lysozyme 2863240 4660240 Sputw3181_2489 Shewanella sp. W3-18-1 prophage LambdaSo, lysozyme YP_963867.1 2862728 R 351745 CDS YP_963868.1 120599294 4660244 complement(2863243..2863503) 1 NC_008750.1 KEGG: shm:Shewmr7_0731 hypothetical protein; hypothetical protein 2863503 4660244 Sputw3181_2490 Shewanella sp. W3-18-1 hypothetical protein YP_963868.1 2863243 R 351745 CDS YP_963869.1 120599295 4659815 complement(2863599..2864189) 1 NC_008750.1 hypothetical protein 2864189 4659815 Sputw3181_2491 Shewanella sp. W3-18-1 hypothetical protein YP_963869.1 2863599 R 351745 CDS YP_963870.1 120599296 4660217 complement(2864248..2864571) 1 NC_008750.1 KEGG: son:SO2976 hypothetical protein; hypothetical protein 2864571 4660217 Sputw3181_2492 Shewanella sp. W3-18-1 hypothetical protein YP_963870.1 2864248 R 351745 CDS YP_963871.1 120599297 4660207 complement(2865005..2865328) 1 NC_008750.1 hypothetical protein 2865328 4660207 Sputw3181_2493 Shewanella sp. W3-18-1 hypothetical protein YP_963871.1 2865005 R 351745 CDS YP_963872.1 120599298 4660210 complement(2865328..2865570) 1 NC_008750.1 hypothetical protein 2865570 4660210 Sputw3181_2494 Shewanella sp. W3-18-1 hypothetical protein YP_963872.1 2865328 R 351745 CDS YP_963873.1 120599299 4660521 complement(2865850..2867049) 1 NC_008750.1 PFAM: phage integrase family protein; KEGG: son:SO2978 prophage LambdaSo, site-specific recombinase, phage integrase family; phage integrase family protein 2867049 4660521 Sputw3181_2495 Shewanella sp. W3-18-1 phage integrase family protein YP_963873.1 2865850 R 351745 CDS YP_963874.1 120599300 4660649 complement(2867049..2867648) 1 NC_008750.1 KEGG: son:SO2979 hypothetical protein; hypothetical protein 2867648 4660649 Sputw3181_2496 Shewanella sp. W3-18-1 hypothetical protein YP_963874.1 2867049 R 351745 CDS YP_963875.1 120599301 4660695 complement(2867648..2868217) 1 NC_008750.1 TIGRFAM: uncharacterized phage protein; KEGG: son:SO2980 hypothetical protein; phage protein 2868217 4660695 Sputw3181_2497 Shewanella sp. W3-18-1 phage protein YP_963875.1 2867648 R 351745 CDS YP_963876.1 120599302 4660731 complement(2868214..2868645) 1 NC_008750.1 KEGG: son:SO2981 hypothetical protein; hypothetical protein 2868645 4660731 Sputw3181_2498 Shewanella sp. W3-18-1 hypothetical protein YP_963876.1 2868214 R 351745 CDS YP_963877.1 120599303 4660782 complement(2868645..2869151) 1 NC_008750.1 KEGG: son:SO2982 hypothetical protein; hypothetical protein 2869151 4660782 Sputw3181_2499 Shewanella sp. W3-18-1 hypothetical protein YP_963877.1 2868645 R 351745 CDS YP_963878.1 120599304 4660810 complement(2869148..2869540) 1 NC_008750.1 KEGG: son:SO2983 hypothetical protein; hypothetical protein 2869540 4660810 Sputw3181_2500 Shewanella sp. W3-18-1 hypothetical protein YP_963878.1 2869148 R 351745 CDS YP_963879.1 120599305 4660415 complement(2869524..2870084) 1 NC_008750.1 KEGG: son:SO2984 hypothetical protein; hypothetical protein 2870084 4660415 Sputw3181_2501 Shewanella sp. W3-18-1 hypothetical protein YP_963879.1 2869524 R 351745 CDS YP_963880.1 120599306 4660873 complement(2870056..2871123) 1 NC_008750.1 TIGRFAM: phage replication protein O; PFAM: phage replication protein O domain protein; KEGG: son:SO2985 prophage LambdaSo, replication protein O; phage replication protein O 2871123 4660873 Sputw3181_2502 Shewanella sp. W3-18-1 phage replication protein O YP_963880.1 2870056 R 351745 CDS YP_963881.1 120599307 4660276 complement(2871180..2871437) 1 NC_008750.1 KEGG: son:SO2986 hypothetical protein; hypothetical protein 2871437 4660276 Sputw3181_2503 Shewanella sp. W3-18-1 hypothetical protein YP_963881.1 2871180 R 351745 CDS YP_963882.1 120599308 4660971 complement(2871437..2871631) 1 NC_008750.1 KEGG: son:SO2987 hypothetical protein; hypothetical protein 2871631 4660971 Sputw3181_2504 Shewanella sp. W3-18-1 hypothetical protein YP_963882.1 2871437 R 351745 CDS YP_963883.1 120599309 4661021 complement(2871624..2872205) 1 NC_008750.1 KEGG: son:SO2988 hypothetical protein; hypothetical protein 2872205 4661021 Sputw3181_2505 Shewanella sp. W3-18-1 hypothetical protein YP_963883.1 2871624 R 351745 CDS YP_963884.1 120599310 4661853 complement(2872239..2872538) 1 NC_008750.1 PFAM: helix-turn-helix domain protein; KEGG: son:SO2989 prophage LambdaSo, transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 2872538 4661853 Sputw3181_2506 Shewanella sp. W3-18-1 XRE family transcriptional regulator YP_963884.1 2872239 R 351745 CDS YP_963885.1 120599311 4661685 2872587..2873246 1 NC_008750.1 PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; KEGG: pst:PSPTO_0571 repressor protein C2; putative prophage repressor 2873246 4661685 Sputw3181_2507 Shewanella sp. W3-18-1 putative prophage repressor YP_963885.1 2872587 D 351745 CDS YP_963886.1 120599312 4661589 2873281..2873703 1 NC_008750.1 KEGG: son:SO2991 hypothetical protein; hypothetical protein 2873703 4661589 Sputw3181_2508 Shewanella sp. W3-18-1 hypothetical protein YP_963886.1 2873281 D 351745 CDS YP_963887.1 120599313 4661563 2873716..2874612 1 NC_008750.1 KEGG: sth:STH1713 ATP-dependent DNA helicase; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2874612 4661563 Sputw3181_2509 Shewanella sp. W3-18-1 DNA polymerase III subunit epsilon YP_963887.1 2873716 D 351745 CDS YP_963888.1 120599314 4661559 complement(2874672..2875388) 1 NC_008750.1 PFAM: bacteriophage lambda tail assembly I; KEGG: son:SO2941 prophage LambdaSo, tail assembly protein I; bacteriophage lambda tail assembly I 2875388 4661559 Sputw3181_2510 Shewanella sp. W3-18-1 bacteriophage lambda tail assembly I YP_963888.1 2874672 R 351745 CDS YP_963889.1 120599315 4661464 2876609..2876848 1 NC_008750.1 hypothetical protein 2876848 4661464 Sputw3181_2511 Shewanella sp. W3-18-1 hypothetical protein YP_963889.1 2876609 D 351745 CDS YP_963890.1 120599316 4661411 2876989..2877414 1 NC_008750.1 KEGG: son:SO2997 hypothetical protein; hypothetical protein 2877414 4661411 Sputw3181_2512 Shewanella sp. W3-18-1 hypothetical protein YP_963890.1 2876989 D 351745 CDS YP_963891.1 120599317 4661353 2877407..2877685 1 NC_008750.1 KEGG: son:SO2998 hypothetical protein; hypothetical protein 2877685 4661353 Sputw3181_2513 Shewanella sp. W3-18-1 hypothetical protein YP_963891.1 2877407 D 351745 CDS YP_963892.1 120599318 4660409 2877773..2878177 1 NC_008750.1 KEGG: sdn:Sden_3274 hypothetical protein; hypothetical protein 2878177 4660409 Sputw3181_2514 Shewanella sp. W3-18-1 hypothetical protein YP_963892.1 2877773 D 351745 CDS YP_963893.1 120599319 4660751 2878174..2878698 1 NC_008750.1 KEGG: ecs:ECs4955 hypothetical protein; hypothetical protein 2878698 4660751 Sputw3181_2515 Shewanella sp. W3-18-1 hypothetical protein YP_963893.1 2878174 D 351745 CDS YP_963894.1 120599320 4660404 2878695..2879237 1 NC_008750.1 hypothetical protein 2879237 4660404 Sputw3181_2516 Shewanella sp. W3-18-1 hypothetical protein YP_963894.1 2878695 D 351745 CDS YP_963895.1 120599321 4661346 2879231..2879395 1 NC_008750.1 KEGG: son:SO2999 hypothetical protein; hypothetical protein 2879395 4661346 Sputw3181_2517 Shewanella sp. W3-18-1 hypothetical protein YP_963895.1 2879231 D 351745 CDS YP_963896.1 120599322 4660377 2879405..2879989 1 NC_008750.1 KEGG: son:SO3000 hypothetical protein; hypothetical protein 2879989 4660377 Sputw3181_2518 Shewanella sp. W3-18-1 hypothetical protein YP_963896.1 2879405 D 351745 CDS YP_963897.1 120599323 4660574 2879986..2880705 1 NC_008750.1 KEGG: psb:Psyr_2841 hypothetical protein; hypothetical protein 2880705 4660574 Sputw3181_2519 Shewanella sp. W3-18-1 hypothetical protein YP_963897.1 2879986 D 351745 CDS YP_963898.1 120599324 4660349 2880702..2881025 1 NC_008750.1 KEGG: son:SO3003 hypothetical protein; hypothetical protein 2881025 4660349 Sputw3181_2520 Shewanella sp. W3-18-1 hypothetical protein YP_963898.1 2880702 D 351745 CDS YP_963899.1 120599325 4660333 2881022..2881381 1 NC_008750.1 hypothetical protein 2881381 4660333 Sputw3181_2521 Shewanella sp. W3-18-1 hypothetical protein YP_963899.1 2881022 D 351745 CDS YP_963900.1 120599326 4660898 2881383..2882267 1 NC_008750.1 PFAM: DNA N-6-adenine-methyltransferase; KEGG: eci:UTI89_C1294 putative DNA N-6-adenine-methyltransferase of bacteriophage; DNA N-6-adenine-methyltransferase 2882267 4660898 Sputw3181_2522 Shewanella sp. W3-18-1 DNA N-6-adenine-methyltransferase YP_963900.1 2881383 D 351745 CDS YP_963901.1 120599327 4661095 2882255..2883925 1 NC_008750.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: son:SO3006 prophage LambdaSo, type II DNA modification methyltransferase, putative; C-5 cytosine-specific DNA methylase 2883925 4661095 Sputw3181_2523 Shewanella sp. W3-18-1 C-5 cytosine-specific DNA methylase YP_963901.1 2882255 D 351745 CDS YP_963902.1 120599328 4660213 2883934..2884170 1 NC_008750.1 KEGG: bce:BC1874 phage protein; phage protein 2884170 4660213 Sputw3181_2524 Shewanella sp. W3-18-1 phage protein YP_963902.1 2883934 D 351745 CDS YP_963903.1 120599329 4660241 2884163..2884954 1 NC_008750.1 KEGG: pat:Patl_0687 hypothetical protein; hypothetical protein 2884954 4660241 Sputw3181_2525 Shewanella sp. W3-18-1 hypothetical protein YP_963903.1 2884163 D 351745 CDS YP_963904.1 120599330 4660281 2884951..2885076 1 NC_008750.1 KEGG: son:SO3007 hypothetical protein; hypothetical protein 2885076 4660281 Sputw3181_2526 Shewanella sp. W3-18-1 hypothetical protein YP_963904.1 2884951 D 351745 CDS YP_963905.1 120599331 4660298 2885073..2885348 1 NC_008750.1 hypothetical protein 2885348 4660298 Sputw3181_2527 Shewanella sp. W3-18-1 hypothetical protein YP_963905.1 2885073 D 351745 CDS YP_963906.1 120599332 4660310 2885348..2885932 1 NC_008750.1 KEGG: pst:PSPTO_3428 hypothetical protein; hypothetical protein 2885932 4660310 Sputw3181_2528 Shewanella sp. W3-18-1 hypothetical protein YP_963906.1 2885348 D 351745 CDS YP_963907.1 120599333 4659830 complement(2886120..2887328) 1 NC_008750.1 PFAM: phage integrase family protein; KEGG: sfr:Sfri_1639 phage integrase family protein; phage integrase family protein 2887328 4659830 Sputw3181_2529 Shewanella sp. W3-18-1 phage integrase family protein YP_963907.1 2886120 R 351745 CDS YP_963908.1 120599334 4660026 2887506..2888924 1 NC_008750.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2888924 sbcB 4660026 sbcB Shewanella sp. W3-18-1 exonuclease I YP_963908.1 2887506 D 351745 CDS YP_963909.1 120599335 4659819 2889090..2889980 1 NC_008750.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2889980 4659819 Sputw3181_2531 Shewanella sp. W3-18-1 cytidine deaminase YP_963909.1 2889090 D 351745 CDS YP_963910.1 120599336 4659973 complement(2890020..2890232) 1 NC_008750.1 PFAM: protein of unknown function DUF1289; KEGG: son:SO2792 hypothetical protein; hypothetical protein 2890232 4659973 Sputw3181_2532 Shewanella sp. W3-18-1 hypothetical protein YP_963910.1 2890020 R 351745 CDS YP_963911.1 120599337 4659809 complement(2890207..2890557) 1 NC_008750.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: she:Shewmr4_2413 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2890557 4659809 Sputw3181_2533 Shewanella sp. W3-18-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_963911.1 2890207 R 351745 CDS YP_963912.1 120599338 4660992 complement(2890659..2891363) 1 NC_008750.1 KEGG: she:Shewmr4_2414 hypothetical protein; hypothetical protein 2891363 4660992 Sputw3181_2534 Shewanella sp. W3-18-1 hypothetical protein YP_963912.1 2890659 R 351745 CDS YP_963913.1 120599339 4659691 2891735..2892115 1 NC_008750.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2795 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 2892115 4659691 Sputw3181_2535 Shewanella sp. W3-18-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_963913.1 2891735 D 351745 CDS YP_963914.1 120599340 4659756 2892351..2895614 1 NC_008750.1 PFAM: protein of unknown function DUF748; KEGG: she:Shewmr4_2416 protein of unknown function DUF748; hypothetical protein 2895614 4659756 Sputw3181_2536 Shewanella sp. W3-18-1 hypothetical protein YP_963914.1 2892351 D 351745 CDS YP_963915.1 120599341 4659371 2895905..2896261 1 NC_008750.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: shm:Shewmr7_2487 glutaredoxin; glutaredoxin 2896261 4659371 Sputw3181_2537 Shewanella sp. W3-18-1 glutaredoxin YP_963915.1 2895905 D 351745 CDS YP_963916.1 120599342 4659109 complement(2896319..2897008) 1 NC_008750.1 KEGG: she:Shewmr4_2418 hypothetical protein; hypothetical protein 2897008 4659109 Sputw3181_2538 Shewanella sp. W3-18-1 hypothetical protein YP_963916.1 2896319 R 351745 CDS YP_963917.1 120599343 4659313 2897159..2897623 1 NC_008750.1 KEGG: son:SO2799 lipoprotein, putative; putative lipoprotein 2897623 4659313 Sputw3181_2539 Shewanella sp. W3-18-1 putative lipoprotein YP_963917.1 2897159 D 351745 CDS YP_963918.1 120599344 4661783 complement(2897684..2897863) 1 NC_008750.1 PFAM: protein of unknown function DUF343; KEGG: son:SO2800 hypothetical protein; hypothetical protein 2897863 4661783 Sputw3181_2540 Shewanella sp. W3-18-1 hypothetical protein YP_963918.1 2897684 R 351745 CDS YP_963919.1 120599345 4660986 complement(2897850..2898863) 1 NC_008750.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2898863 lpxK 4660986 lpxK Shewanella sp. W3-18-1 tetraacyldisaccharide 4'-kinase YP_963919.1 2897850 R 351745 CDS YP_963920.1 120599346 4658969 complement(2898864..2900672) 1 NC_008750.1 KEGG: son:SO2802 ABC transporter, ATP-binding protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 2900672 4658969 Sputw3181_2542 Shewanella sp. W3-18-1 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_963920.1 2898864 R 351745 CDS YP_963921.1 120599347 4659017 complement(2900705..2903029) 1 NC_008750.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: shm:Shewmr7_2493 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 2903029 4659017 Sputw3181_2543 Shewanella sp. W3-18-1 DNA internalization-related competence protein ComEC/Rec2 YP_963921.1 2900705 R 351745 CDS YP_963922.1 120599348 4661008 2903061..2903570 1 NC_008750.1 KEGG: shm:Shewmr7_2494 hypothetical protein; hypothetical protein 2903570 4661008 Sputw3181_2544 Shewanella sp. W3-18-1 hypothetical protein YP_963922.1 2903061 D 351745 CDS YP_963923.1 120599349 4658574 2903854..2904258 1 NC_008750.1 PFAM: phosphate-starvation-inducible E; KEGG: shm:Shewmr7_2496 phosphate-starvation-inducible E; phosphate-starvation-inducible E 2904258 4658574 Sputw3181_2545 Shewanella sp. W3-18-1 phosphate-starvation-inducible E YP_963923.1 2903854 D 351745 CDS YP_963924.1 120599350 4658573 2904413..2904715 1 NC_008750.1 PFAM: type IV pilus assembly PilZ; KEGG: shm:Shewmr7_2497 type IV pilus assembly PilZ; type IV pilus assembly PilZ 2904715 4658573 Sputw3181_2546 Shewanella sp. W3-18-1 type IV pilus assembly PilZ YP_963924.1 2904413 D 351745 CDS YP_963925.1 120599351 4658338 2904793..2905461 1 NC_008750.1 KEGG: son:SO2808 hypothetical protein; hypothetical protein 2905461 4658338 Sputw3181_2547 Shewanella sp. W3-18-1 hypothetical protein YP_963925.1 2904793 D 351745 CDS YP_963926.1 120599352 4658538 2905448..2905789 1 NC_008750.1 KEGG: shm:Shewmr7_2499 RepA domain protein; RepA domain-containing protein 2905789 4658538 Sputw3181_2548 Shewanella sp. W3-18-1 RepA domain-containing protein YP_963926.1 2905448 D 351745 CDS YP_963927.1 120599353 4658376 complement(2905874..2906116) 1 NC_008750.1 KEGG: shm:Shewmr7_2500 hypothetical protein; hypothetical protein 2906116 4658376 Sputw3181_2549 Shewanella sp. W3-18-1 hypothetical protein YP_963927.1 2905874 R 351745 CDS YP_963928.1 120599354 4658435 2906245..2907927 1 NC_008750.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: son:SO2822 sensor histidine kinase; signal transduction histidine kinase LytS 2907927 4658435 Sputw3181_2550 Shewanella sp. W3-18-1 signal transduction histidine kinase LytS YP_963928.1 2906245 D 351745 CDS YP_963929.1 120599355 4661128 2907924..2908634 1 NC_008750.1 unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT 2908634 4661128 Sputw3181_2551 Shewanella sp. W3-18-1 putative two-component response-regulatory protein YehT YP_963929.1 2907924 D 351745 CDS YP_963930.1 120599356 4658461 2908797..2910245 1 NC_008750.1 PFAM: carbon starvation protein CstA; KEGG: she:Shewmr4_2433 carbon starvation protein CstA; carbon starvation protein CstA 2910245 4658461 Sputw3181_2552 Shewanella sp. W3-18-1 carbon starvation protein CstA YP_963930.1 2908797 D 351745 CDS YP_963931.1 120599357 4658649 2910384..2910752 1 NC_008750.1 KEGG: she:Shewmr4_2434 hypothetical protein; hypothetical protein 2910752 4658649 Sputw3181_2553 Shewanella sp. W3-18-1 hypothetical protein YP_963931.1 2910384 D 351745 CDS YP_963932.1 120599358 4658531 2910905..2911357 1 NC_008750.1 KEGG: son:SO2829 hypothetical protein; hypothetical protein 2911357 4658531 Sputw3181_2554 Shewanella sp. W3-18-1 hypothetical protein YP_963932.1 2910905 D 351745 CDS YP_963933.1 120599359 4660981 complement(2911452..2912318) 1 NC_008750.1 KEGG: son:SO2830 hypothetical protein; hypothetical protein 2912318 4660981 Sputw3181_2555 Shewanella sp. W3-18-1 hypothetical protein YP_963933.1 2911452 R 351745 CDS YP_963934.1 120599360 4658002 complement(2912415..2913026) 1 NC_008750.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 2913026 ribA 4658002 ribA Shewanella sp. W3-18-1 GTP cyclohydrolase II YP_963934.1 2912415 R 351745 CDS YP_963935.1 120599361 4660938 complement(2913282..2913638) 1 NC_008750.1 KEGG: she:Shewmr4_2439 hypothetical protein; hypothetical protein 2913638 4660938 Sputw3181_2557 Shewanella sp. W3-18-1 hypothetical protein YP_963935.1 2913282 R 351745 CDS YP_963936.1 120599362 4657684 complement(2913753..2914214) 1 NC_008750.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 2914214 nrdG 4657684 nrdG Shewanella sp. W3-18-1 anaerobic ribonucleotide reductase-activating protein YP_963936.1 2913753 R 351745 CDS YP_963937.1 120599363 4657905 complement(2914330..2916447) 1 NC_008750.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2916447 4657905 Sputw3181_2559 Shewanella sp. W3-18-1 anaerobic ribonucleoside triphosphate reductase YP_963937.1 2914330 R 351745 CDS YP_963938.1 120599364 4657818 complement(2916715..2917404) 1 NC_008750.1 KEGG: shm:Shewmr7_2512 hypothetical protein; hypothetical protein 2917404 4657818 Sputw3181_2560 Shewanella sp. W3-18-1 hypothetical protein YP_963938.1 2916715 R 351745 CDS YP_963939.1 120599365 4661855 complement(2917491..2918453) 1 NC_008750.1 PFAM: Patatin; KEGG: son:SO2836 hypothetical protein; patatin 2918453 4661855 Sputw3181_2561 Shewanella sp. W3-18-1 patatin YP_963939.1 2917491 R 351745 CDS YP_963940.1 120599366 4657766 2918700..2920049 1 NC_008750.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: she:Shewmr4_2444 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 2920049 4657766 Sputw3181_2562 Shewanella sp. W3-18-1 DEAD/DEAH box helicase YP_963940.1 2918700 D 351745 CDS YP_963941.1 120599367 4657763 2920189..2920626 1 NC_008750.1 KEGG: son:SO2839 hypothetical protein; hypothetical protein 2920626 4657763 Sputw3181_2563 Shewanella sp. W3-18-1 hypothetical protein YP_963941.1 2920189 D 351745 CDS YP_963942.1 120599368 4657774 2920668..2921177 1 NC_008750.1 PFAM: protein of unknown function DUF45; KEGG: son:SO2840 hypothetical protein; hypothetical protein 2921177 4657774 Sputw3181_2564 Shewanella sp. W3-18-1 hypothetical protein YP_963942.1 2920668 D 351745 CDS YP_963943.1 120599369 4657773 2921275..2921745 1 NC_008750.1 KEGG: son:SO2841 hypothetical protein; hypothetical protein 2921745 4657773 Sputw3181_2565 Shewanella sp. W3-18-1 hypothetical protein YP_963943.1 2921275 D 351745 CDS YP_963944.1 120599370 4657809 complement(2922070..2923365) 1 NC_008750.1 PFAM: peptidase M23B; Opacity-associated protein A; KEGG: shm:Shewmr7_2518 peptidase M23B; peptidase M23B 2923365 4657809 Sputw3181_2566 Shewanella sp. W3-18-1 peptidase M23B YP_963944.1 2922070 R 351745 CDS YP_963945.1 120599371 4657845 complement(2923631..2926687) 1 NC_008750.1 PFAM: SMC domain protein; KEGG: she:Shewmr4_2449 SMC domain protein; SMC domain-containing protein 2926687 4657845 Sputw3181_2567 Shewanella sp. W3-18-1 SMC domain-containing protein YP_963945.1 2923631 R 351745 CDS YP_963946.1 120599372 4657851 complement(2926684..2927829) 1 NC_008750.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: shm:Shewmr7_2520 nuclease SbcCD, D subunit; nuclease SbcCD subunit D 2927829 4657851 Sputw3181_2568 Shewanella sp. W3-18-1 nuclease SbcCD subunit D YP_963946.1 2926684 R 351745 CDS YP_963947.1 120599373 4657887 complement(2928212..2928985) 1 NC_008750.1 PFAM: protein of unknown function DUF81; KEGG: son:SO2846 hypothetical protein; hypothetical protein 2928985 4657887 Sputw3181_2569 Shewanella sp. W3-18-1 hypothetical protein YP_963947.1 2928212 R 351745 CDS YP_963948.1 120599374 4657999 2929143..2930048 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2522 transcriptional regulator, LysR family; LysR family transcriptional regulator 2930048 4657999 Sputw3181_2570 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_963948.1 2929143 D 351745 CDS YP_963949.1 120599375 4658072 2930200..2931810 1 NC_008750.1 KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 2931810 4658072 Sputw3181_2571 Shewanella sp. W3-18-1 IS4 family transposase YP_963949.1 2930200 D 351745 CDS YP_963950.1 120599376 4658207 complement(2932010..2932399) 1 NC_008750.1 PFAM: protein of unknown function DUF1260; KEGG: son:SO1836 hypothetical protein; hypothetical protein 2932399 4658207 Sputw3181_2572 Shewanella sp. W3-18-1 hypothetical protein YP_963950.1 2932010 R 351745 CDS YP_963951.1 120599377 4658210 complement(2932422..2932661) 1 NC_008750.1 KEGG: shm:Shewmr7_2524 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 2932661 4658210 Sputw3181_2573 Shewanella sp. W3-18-1 RNA-binding S4 domain-containing protein YP_963951.1 2932422 R 351745 CDS YP_963952.1 120599378 4658211 complement(2932816..2933352) 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1834 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2933352 4658211 Sputw3181_2574 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_963952.1 2932816 R 351745 CDS YP_963953.1 120599379 4658214 complement(2933420..2933698) 1 NC_008750.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: shm:Shewmr7_2526 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 2933698 4658214 Sputw3181_2575 Shewanella sp. W3-18-1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_963953.1 2933420 R 351745 CDS YP_963954.1 120599380 4658218 complement(2933877..2935706) 1 NC_008750.1 PFAM: protein of unknown function DUF885; KEGG: she:Shewmr4_2457 protein of unknown function DUF885; hypothetical protein 2935706 4658218 Sputw3181_2576 Shewanella sp. W3-18-1 hypothetical protein YP_963954.1 2933877 R 351745 CDS YP_963955.1 120599381 4658222 2935786..2936295 1 NC_008750.1 PFAM: GGDEF domain containing protein; KEGG: son:SO1830 GGDEF domain protein; diguanylate cyclase 2936295 4658222 Sputw3181_2577 Shewanella sp. W3-18-1 diguanylate cyclase YP_963955.1 2935786 D 351745 CDS YP_963956.1 120599382 4657744 complement(2936363..2937607) 1 NC_008750.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_2529 TPR repeat-containing protein; hypothetical protein 2937607 4657744 Sputw3181_2578 Shewanella sp. W3-18-1 hypothetical protein YP_963956.1 2936363 R 351745 CDS YP_963957.1 120599383 4658236 complement(2937610..2938230) 1 NC_008750.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: shm:Shewmr7_2530 TonB family protein; TonB family protein 2938230 4658236 Sputw3181_2579 Shewanella sp. W3-18-1 TonB family protein YP_963957.1 2937610 R 351745 CDS YP_963958.1 120599384 4658237 complement(2938232..2938636) 1 NC_008750.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: shm:Shewmr7_2531 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2938636 4658237 Sputw3181_2580 Shewanella sp. W3-18-1 biopolymer transport protein ExbD/TolR YP_963958.1 2938232 R 351745 CDS YP_963959.1 120599385 4658242 complement(2938650..2939177) 1 NC_008750.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: she:Shewmr4_2462 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2939177 4658242 Sputw3181_2581 Shewanella sp. W3-18-1 MotA/TolQ/ExbB proton channel YP_963959.1 2938650 R 351745 CDS YP_963960.1 120599386 4658248 complement(2939177..2940532) 1 NC_008750.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: shm:Shewmr7_2533 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2940532 4658248 Sputw3181_2582 Shewanella sp. W3-18-1 MotA/TolQ/ExbB proton channel YP_963960.1 2939177 R 351745 CDS YP_963961.1 120599387 4658249 complement(2940532..2941314) 1 NC_008750.1 KEGG: shm:Shewmr7_2534 hypothetical protein; hypothetical protein 2941314 4658249 Sputw3181_2583 Shewanella sp. W3-18-1 hypothetical protein YP_963961.1 2940532 R 351745 CDS YP_963962.1 120599388 4658250 complement(2941789..2944602) 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAb0158 putative TonB-dependent receptor with TonB-box; TonB-dependent receptor 2944602 4658250 Sputw3181_2584 Shewanella sp. W3-18-1 TonB-dependent receptor YP_963962.1 2941789 R 351745 CDS YP_963963.1 120599389 4657748 complement(2945370..2946578) 1 NC_008750.1 PFAM: porin, Gram-negative type; KEGG: she:Shewmr4_2468 porin, gram-negative type; porin 2946578 4657748 Sputw3181_2585 Shewanella sp. W3-18-1 porin YP_963963.1 2945370 R 351745 CDS YP_963964.1 120599390 4658251 complement(2946799..2949192) 1 NC_008750.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 2949192 4658251 Sputw3181_2586 Shewanella sp. W3-18-1 DNA polymerase II YP_963964.1 2946799 R 351745 CDS YP_963965.1 120599391 4658252 2949292..2951364 1 NC_008750.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 2951364 dinG 4658252 dinG Shewanella sp. W3-18-1 ATP-dependent DNA helicase DinG YP_963965.1 2949292 D 351745 CDS YP_963966.1 120599392 4658254 2951374..2952147 1 NC_008750.1 PFAM: protein of unknown function DUF81; KEGG: shm:Shewmr7_2539 protein of unknown function DUF81; hypothetical protein 2952147 4658254 Sputw3181_2588 Shewanella sp. W3-18-1 hypothetical protein YP_963966.1 2951374 D 351745 CDS YP_963967.1 120599393 4658257 2952138..2952806 1 NC_008750.1 KEGG: she:Shewmr4_2472 primosomal replication protein N'', putative; primosomal replication protein N'' 2952806 4658257 Sputw3181_2589 Shewanella sp. W3-18-1 primosomal replication protein N'' YP_963967.1 2952138 D 351745 CDS YP_963968.1 120599394 4658261 2952816..2953520 1 NC_008750.1 KEGG: she:Shewmr4_2473 hypothetical protein; hypothetical protein 2953520 4658261 Sputw3181_2590 Shewanella sp. W3-18-1 hypothetical protein YP_963968.1 2952816 D 351745 CDS YP_963969.1 120599395 4659905 2953819..2954109 1 NC_008750.1 KEGG: son:SO1814 hypothetical protein; hypothetical protein 2954109 4659905 Sputw3181_2592 Shewanella sp. W3-18-1 hypothetical protein YP_963969.1 2953819 D 351745 CDS YP_963970.1 120599396 4659859 complement(2954539..2954922) 1 NC_008750.1 KEGG: shm:Shewmr7_2544 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1; helix-hairpin-helix repeat-containing competence protein ComEA 2954922 4659859 Sputw3181_2593 Shewanella sp. W3-18-1 helix-hairpin-helix repeat-containing competence protein ComEA YP_963970.1 2954539 R 351745 CDS YP_963971.1 120599397 4658286 complement(2955148..2956341) 1 NC_008750.1 KEGG: she:Shewmr4_2477 methionine gamma-lyase; TIGRFAM: methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; methionine gamma-lyase 2956341 4658286 Sputw3181_2594 Shewanella sp. W3-18-1 methionine gamma-lyase YP_963971.1 2955148 R 351745 CDS YP_963972.1 120599398 4658295 complement(2956684..2957916) 1 NC_008750.1 PFAM: conserved hypothetical protein 1620; KEGG: she:Shewmr4_2478 conserved hypothetical protein 1620; hypothetical protein 2957916 4658295 Sputw3181_2595 Shewanella sp. W3-18-1 hypothetical protein YP_963972.1 2956684 R 351745 CDS YP_963973.1 120599399 4658303 complement(2957913..2959385) 1 NC_008750.1 PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: she:Shewmr4_2479 protein of unknown function DUF463, YcjX family protein; hypothetical protein 2959385 4658303 Sputw3181_2596 Shewanella sp. W3-18-1 hypothetical protein YP_963973.1 2957913 R 351745 CDS YP_963974.1 120599400 4658304 complement(2959467..2959853) 1 NC_008750.1 PFAM: PspC domain protein; KEGG: shm:Shewmr7_2548 phage shock protein C, PspC; phage shock protein C, PspC 2959853 4658304 Sputw3181_2597 Shewanella sp. W3-18-1 phage shock protein C, PspC YP_963974.1 2959467 R 351745 CDS YP_963975.1 120599401 4658310 complement(2959840..2960073) 1 NC_008750.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 2960073 pspB 4658310 pspB Shewanella sp. W3-18-1 phage shock protein B YP_963975.1 2959840 R 351745 CDS YP_963976.1 120599402 4658319 complement(2960097..2960780) 1 NC_008750.1 PFAM: PspA/IM30 family protein; KEGG: son:SO1807 phage shock protein A; phage shock protein A, PspA 2960780 4658319 Sputw3181_2599 Shewanella sp. W3-18-1 phage shock protein A, PspA YP_963976.1 2960097 R 351745 CDS YP_963977.1 120599403 4658325 2960958..2962046 1 NC_008750.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_2551 transcriptional regulator, fis family; Fis family transcriptional regulator 2962046 4658325 Sputw3181_2600 Shewanella sp. W3-18-1 Fis family transcriptional regulator YP_963977.1 2960958 D 351745 CDS YP_963978.1 120599404 4658327 2962116..2963741 1 NC_008750.1 PFAM: extracellular solute-binding protein, family 5; KEGG: shm:Shewmr7_2552 extracellular solute-binding protein, family 5; extracellular solute-binding protein 2963741 4658327 Sputw3181_2601 Shewanella sp. W3-18-1 extracellular solute-binding protein YP_963978.1 2962116 D 351745 CDS YP_963979.1 120599405 4658331 2963741..2964772 1 NC_008750.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: she:Shewmr4_2485 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2964772 4658331 Sputw3181_2602 Shewanella sp. W3-18-1 binding-protein-dependent transport system inner membrane protein YP_963979.1 2963741 D 351745 CDS YP_963980.1 120599406 4658694 2964759..2965649 1 NC_008750.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2554 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2965649 4658694 Sputw3181_2603 Shewanella sp. W3-18-1 binding-protein-dependent transport system inner membrane protein YP_963980.1 2964759 D 351745 CDS YP_963981.1 120599407 4658413 2965653..2966660 1 NC_008750.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; KEGG: shm:Shewmr7_2555 oligopeptide/dipeptide ABC transporter, ATPase subunit; oligopeptide/dipeptide ABC transporter ATPase 2966660 4658413 Sputw3181_2604 Shewanella sp. W3-18-1 oligopeptide/dipeptide ABC transporter ATPase YP_963981.1 2965653 D 351745 CDS YP_963982.1 120599408 4658367 2966641..2967426 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein; ABC transporter-like protein 2967426 4658367 Sputw3181_2605 Shewanella sp. W3-18-1 ABC transporter-like protein YP_963982.1 2966641 D 351745 CDS YP_963983.1 120599409 4658870 2967532..2968737 1 NC_008750.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 2968737 4658870 Sputw3181_2606 Shewanella sp. W3-18-1 trans-2-enoyl-CoA reductase YP_963983.1 2967532 D 351745 CDS YP_963984.1 120599410 4658879 complement(2969330..2971186) 1 NC_008750.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: she:Shewmr4_2491 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 2971186 4658879 Sputw3181_2607 Shewanella sp. W3-18-1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_963984.1 2969330 R 351745 CDS YP_963985.1 120599411 4658881 complement(2971414..2971686) 1 NC_008750.1 PFAM: histone family protein DNA-binding protein; KEGG: shm:Shewmr7_2560 histone family protein DNA-binding protein; histone family protein DNA-binding protein 2971686 4658881 Sputw3181_2608 Shewanella sp. W3-18-1 histone family protein DNA-binding protein YP_963985.1 2971414 R 351745 CDS YP_963986.1 120599412 4658886 complement(2971946..2974303) 1 NC_008750.1 KEGG: shm:Shewmr7_2561 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 2974303 4658886 Sputw3181_2609 Shewanella sp. W3-18-1 ATP-dependent protease La YP_963986.1 2971946 R 351745 CDS YP_963987.1 120599413 4658889 complement(2974436..2975716) 1 NC_008750.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2975716 clpX 4658889 clpX Shewanella sp. W3-18-1 ATP-dependent protease ATP-binding subunit ClpX YP_963987.1 2974436 R 351745 CDS YP_963988.1 120599414 4658887 complement(2975802..2976410) 1 NC_008750.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2976410 clpP 4658887 clpP Shewanella sp. W3-18-1 ATP-dependent Clp protease proteolytic subunit YP_963988.1 2975802 R 351745 CDS YP_963989.1 120599415 4658898 complement(2976500..2977804) 1 NC_008750.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2977804 tig 4658898 tig Shewanella sp. W3-18-1 trigger factor YP_963989.1 2976500 R 351745 CDS YP_963990.1 120599416 4659375 2978781..2979635 1 NC_008750.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2979635 4659375 Sputw3181_2613 Shewanella sp. W3-18-1 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_963990.1 2978781 D 351745 CDS YP_963991.1 120599417 4658618 complement(2979821..2981206) 1 NC_008750.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2981206 cysS 4658618 cysS Shewanella sp. W3-18-1 cysteinyl-tRNA synthetase YP_963991.1 2979821 R 351745 CDS YP_963992.1 120599418 4658918 2981341..2981835 1 NC_008750.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO1790 peptidyl-prolyl cis-trans isomerase B; cyclophilin type peptidyl-prolyl cis-trans isomerase 2981835 4658918 Sputw3181_2615 Shewanella sp. W3-18-1 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_963992.1 2981341 D 351745 CDS YP_963993.1 120599419 4658919 2981845..2982570 1 NC_008750.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 2982570 4658919 Sputw3181_2616 Shewanella sp. W3-18-1 UDP-2,3-diacylglucosamine hydrolase YP_963993.1 2981845 D 351745 CDS YP_963994.1 120599420 4658924 complement(2982641..2983450) 1 NC_008750.1 PFAM: tRNA--hydroxylase; KEGG: she:Shewmr4_2501 tRNA--hydroxylase; tRNA--hydroxylase 2983450 4658924 Sputw3181_2617 Shewanella sp. W3-18-1 tRNA--hydroxylase YP_963994.1 2982641 R 351745 CDS YP_963995.1 120599421 4658927 2983688..2984284 1 NC_008750.1 PFAM: protein of unknown function DUF1282; KEGG: she:Shewmr4_2502 protein of unknown function DUF1282; hypothetical protein 2984284 4658927 Sputw3181_2618 Shewanella sp. W3-18-1 hypothetical protein YP_963995.1 2983688 D 351745 CDS YP_963996.1 120599422 4658932 complement(2984384..2986054) 1 NC_008750.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 2986054 4658932 Sputw3181_2619 Shewanella sp. W3-18-1 glutaminyl-tRNA synthetase YP_963996.1 2984384 R 351745 CDS YP_963997.1 120599423 4658933 complement(2986245..2988539) 1 NC_008750.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; Miro domain protein; KEGG: son:SO1784 ferrous iron transport protein B; ferrous iron transport protein B 2988539 4658933 Sputw3181_2620 Shewanella sp. W3-18-1 ferrous iron transport protein B YP_963997.1 2986245 R 351745 CDS YP_963998.1 120599424 4658934 complement(2988532..2988771) 1 NC_008750.1 PFAM: FeoA family protein; KEGG: shm:Shewmr7_2573 FeoA family protein; FeoA family protein 2988771 4658934 Sputw3181_2621 Shewanella sp. W3-18-1 FeoA family protein YP_963998.1 2988532 R 351745 CDS YP_963999.1 120599425 4658944 2989610..2992111 1 NC_008750.1 KEGG: son:SO1779 decaheme cytochrome c; hypothetical protein 2992111 4658944 Sputw3181_2622 Shewanella sp. W3-18-1 hypothetical protein YP_963999.1 2989610 D 351745 CDS YP_964000.1 120599426 4658950 2992502..2994466 1 NC_008750.1 KEGG: shm:Shewmr7_2578 decaheme cytochrome c; decaheme cytochrome c 2994466 4658950 Sputw3181_2623 Shewanella sp. W3-18-1 decaheme cytochrome c YP_964000.1 2992502 D 351745 CDS YP_964001.1 120599427 4659655 2994536..2995537 1 NC_008750.1 TIGRFAM: cytochrome C family protein; KEGG: son:SO1777 decaheme cytochrome c MtrA; cytochrome C family protein 2995537 4659655 Sputw3181_2624 Shewanella sp. W3-18-1 cytochrome C family protein YP_964001.1 2994536 D 351745 CDS YP_964002.1 120599428 4659168 2995550..2997637 1 NC_008750.1 KEGG: she:Shewmr4_2512 outer membrane protein precursor MtrB; outer membrane protein MtrB 2997637 4659168 Sputw3181_2625 Shewanella sp. W3-18-1 outer membrane protein MtrB YP_964002.1 2995550 D 351745 CDS YP_964003.1 120599429 4659011 2997822..2998427 1 NC_008750.1 KEGG: she:Shewmr4_2513 hypothetical protein; hypothetical protein 2998427 4659011 Sputw3181_2626 Shewanella sp. W3-18-1 hypothetical protein YP_964003.1 2997822 D 351745 CDS YP_964004.1 120599430 4659084 2998460..2999146 1 NC_008750.1 KEGG: shm:Shewmr7_2582 phage SPO1 DNA polymerase domain protein; phage SPO1 DNA polymerase domain-containing protein 2999146 4659084 Sputw3181_2627 Shewanella sp. W3-18-1 phage SPO1 DNA polymerase domain-containing protein YP_964004.1 2998460 D 351745 CDS YP_964005.1 120599431 4659297 2999155..3000396 1 NC_008750.1 PFAM: sugar diacid recognition domain protein; KEGG: shm:Shewmr7_2584 transcriptional regulator, CdaR; transcriptional regulator CdaR 3000396 4659297 Sputw3181_2628 Shewanella sp. W3-18-1 transcriptional regulator CdaR YP_964005.1 2999155 D 351745 CDS YP_964006.1 120599432 4659448 3000521..3001528 1 NC_008750.1 PFAM: Catalase domain protein; KEGG: she:Shewmr4_2517 catalase domain protein; catalase domain-containing protein 3001528 4659448 Sputw3181_2629 Shewanella sp. W3-18-1 catalase domain-containing protein YP_964006.1 3000521 D 351745 CDS YP_964007.1 120599433 4659455 3001824..3003182 1 NC_008750.1 PFAM: Gluconate transporter; Citrate transporter; KEGG: shm:Shewmr7_2586 gluconate transporter; gluconate transporter 3003182 4659455 Sputw3181_2630 Shewanella sp. W3-18-1 gluconate transporter YP_964007.1 3001824 D 351745 CDS YP_964008.1 120599434 4659456 3003242..3004426 1 NC_008750.1 PFAM: glycerate kinase; KEGG: shm:Shewmr7_2587 glycerate kinase; glycerate kinase 3004426 4659456 Sputw3181_2631 Shewanella sp. W3-18-1 glycerate kinase YP_964008.1 3003242 D 351745 CDS YP_964009.1 120599435 4659458 3004660..3006309 1 NC_008750.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: she:Shewmr4_2520 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase 3006309 4659458 Sputw3181_2632 Shewanella sp. W3-18-1 pyridoxal-dependent decarboxylase YP_964009.1 3004660 D 351745 CDS YP_964010.1 120599436 4659468 3006796..3007446 1 NC_008750.1 PFAM: transposase, mutator type; KEGG: son:SO4497 ISSod5, transposase; transposase, mutator type 3007446 4659468 Sputw3181_2633 Shewanella sp. W3-18-1 transposase, mutator type YP_964010.1 3006796 D 351745 CDS YP_964011.1 120599437 4659473 3007400..3007678 1 NC_008750.1 KEGG: she:Shewmr4_1779 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 3007678 4659473 Sputw3181_2634 Shewanella sp. W3-18-1 transposase IS116/IS110/IS902 family protein YP_964011.1 3007400 D 351745 CDS YP_964012.1 120599438 4659475 3008348..3008722 1 NC_008750.1 KEGG: she:Shewmr4_2525 hypothetical protein; hypothetical protein 3008722 4659475 Sputw3181_2635 Shewanella sp. W3-18-1 hypothetical protein YP_964012.1 3008348 D 351745 CDS YP_964013.1 120599439 4659476 3008868..3009323 1 NC_008750.1 hypothetical protein 3009323 4659476 Sputw3181_2636 Shewanella sp. W3-18-1 hypothetical protein YP_964013.1 3008868 D 351745 CDS YP_964014.1 120599440 4659481 complement(3010000..3011016) 1 NC_008750.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_1779 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 3011016 4659481 Sputw3181_2637 Shewanella sp. W3-18-1 transposase IS116/IS110/IS902 family protein YP_964014.1 3010000 R 351745 CDS YP_964015.1 120599441 4659482 complement(3011550..3012509) 1 NC_008750.1 KEGG: cps:CPS_2655 hypothetical protein; hypothetical protein 3012509 4659482 Sputw3181_2638 Shewanella sp. W3-18-1 hypothetical protein YP_964015.1 3011550 R 351745 CDS YP_964016.1 120599442 4659483 3012667..3013026 1 NC_008750.1 KEGG: son:SO1765 hypothetical protein; hypothetical protein 3013026 4659483 Sputw3181_2639 Shewanella sp. W3-18-1 hypothetical protein YP_964016.1 3012667 D 351745 CDS YP_964017.1 120599443 4659485 3013084..3013599 1 NC_008750.1 PFAM: protein of unknown function DUF1706; KEGG: son:SO1764 hypothetical protein; hypothetical protein 3013599 4659485 Sputw3181_2640 Shewanella sp. W3-18-1 hypothetical protein YP_964017.1 3013084 D 351745 CDS YP_964018.1 120599444 4659486 3013630..3014286 1 NC_008750.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO1763 streptogramin A acetyl transferase; hexapaptide repeat-containing transferase 3014286 4659486 Sputw3181_2641 Shewanella sp. W3-18-1 hexapaptide repeat-containing transferase YP_964018.1 3013630 D 351745 CDS YP_964019.1 120599445 4659489 3014475..3015311 1 NC_008750.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO1762 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 3015311 4659489 Sputw3181_2642 Shewanella sp. W3-18-1 AraC family transcriptional regulator YP_964019.1 3014475 D 351745 CDS YP_964020.1 120599446 4659143 3015440..3016321 1 NC_008750.1 PFAM: AzlC family protein; KEGG: she:Shewmr4_2528 AzlC family protein; AzlC family protein 3016321 4659143 Sputw3181_2643 Shewanella sp. W3-18-1 AzlC family protein YP_964020.1 3015440 D 351745 CDS YP_964021.1 120599447 4659497 3016318..3016620 1 NC_008750.1 PFAM: branched-chain amino acid transport; KEGG: son:SO1759 hypothetical protein; branched-chain amino acid transport 3016620 4659497 Sputw3181_2644 Shewanella sp. W3-18-1 branched-chain amino acid transport YP_964021.1 3016318 D 351745 CDS YP_964022.1 120599448 4659147 complement(3016600..3017277) 1 NC_008750.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: she:Shewmr4_2538 helix-turn-helix, type 11 domain protein; helix-turn-helix, type 11 domain-containing protein 3017277 4659147 Sputw3181_2645 Shewanella sp. W3-18-1 helix-turn-helix, type 11 domain-containing protein YP_964022.1 3016600 R 351745 CDS YP_964023.1 120599449 4659500 complement(3017330..3017794) 1 NC_008750.1 PFAM: transcription activator, effector binding; KEGG: son:SO1757 hypothetical protein; transcription activator, effector binding 3017794 4659500 Sputw3181_2646 Shewanella sp. W3-18-1 transcription activator, effector binding YP_964023.1 3017330 R 351745 CDS YP_964024.1 120599450 4659509 complement(3017881..3018264) 1 NC_008750.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: shm:Shewmr7_2607 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3018264 4659509 Sputw3181_2647 Shewanella sp. W3-18-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_964024.1 3017881 R 351745 CDS YP_964025.1 120599451 4659514 complement(3018439..3020160) 1 NC_008750.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: she:Shewmr4_2541 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/subunit 3020160 4659514 Sputw3181_2648 Shewanella sp. W3-18-1 phosphoglucomutase/phosphomannomutase alpha/beta/subunit YP_964025.1 3018439 R 351745 CDS YP_964026.1 120599452 4659523 complement(3020252..3021238) 1 NC_008750.1 PFAM: Integral membrane protein TerC; KEGG: son:SO1747 membrane protein, putative; integral membrane protein TerC 3021238 4659523 Sputw3181_2649 Shewanella sp. W3-18-1 integral membrane protein TerC YP_964026.1 3020252 R 351745 CDS YP_964027.1 120599453 4659536 complement(3021534..3021767) 1 NC_008750.1 KEGG: shm:Shewmr7_2611 hypothetical protein; hypothetical protein 3021767 4659536 Sputw3181_2650 Shewanella sp. W3-18-1 hypothetical protein YP_964027.1 3021534 R 351745 CDS YP_964028.1 120599454 4659541 complement(3021838..3022965) 1 NC_008750.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: shm:Shewmr7_2612 3-beta hydroxysteroid dehydrogenase/isomerase; 3-beta hydroxysteroid dehydrogenase/isomerase 3022965 4659541 Sputw3181_2651 Shewanella sp. W3-18-1 3-beta hydroxysteroid dehydrogenase/isomerase YP_964028.1 3021838 R 351745 CDS YP_964029.1 120599455 4659154 complement(3023115..3024941) 1 NC_008750.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 3024941 4659154 Sputw3181_2652 Shewanella sp. W3-18-1 peptide synthase YP_964029.1 3023115 R 351745 CDS YP_964030.1 120599456 4659544 complement(3024941..3025852) 1 NC_008750.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO1743 hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold domain-containing protein 3025852 4659544 Sputw3181_2653 Shewanella sp. W3-18-1 alpha/beta hydrolase fold domain-containing protein YP_964030.1 3024941 R 351745 CDS YP_964031.1 120599457 4659648 complement(3025949..3026998) 1 NC_008750.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 3026998 4659648 Sputw3181_2654 Shewanella sp. W3-18-1 3-oxoacyl-ACP synthase YP_964031.1 3025949 R 351745 CDS YP_964032.1 120599458 4660223 complement(3027251..3028549) 1 NC_008750.1 KEGG: son:SO1741 hypothetical protein; hypothetical protein 3028549 4660223 Sputw3181_2655 Shewanella sp. W3-18-1 hypothetical protein YP_964032.1 3027251 R 351745 CDS YP_964033.1 120599459 4659849 3028766..3028999 1 NC_008750.1 PFAM: protein of unknown function DUF1289; KEGG: shm:Shewmr7_2617 protein of unknown function DUF1289; hypothetical protein 3028999 4659849 Sputw3181_2656 Shewanella sp. W3-18-1 hypothetical protein YP_964033.1 3028766 D 351745 CDS YP_964034.1 120599460 4659555 complement(3029020..3029382) 1 NC_008750.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: son:SO1738 hypothetical protein; hypothetical protein 3029382 4659555 Sputw3181_2657 Shewanella sp. W3-18-1 hypothetical protein YP_964034.1 3029020 R 351745 CDS YP_964035.1 120599461 4659087 complement(3029518..3031494) 1 NC_008750.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: she:Shewmr4_2552 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter 3031494 4659087 Sputw3181_2658 Shewanella sp. W3-18-1 choline/carnitine/betaine transporter YP_964035.1 3029518 R 351745 CDS YP_964036.1 120599462 4660048 complement(3031889..3032473) 1 NC_008750.1 KEGG: son:SO1736 hypothetical protein; hypothetical protein 3032473 4660048 Sputw3181_2659 Shewanella sp. W3-18-1 hypothetical protein YP_964036.1 3031889 R 351745 CDS YP_964037.1 120599463 4660098 3032634..3033029 1 NC_008750.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO1734 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 3033029 4660098 Sputw3181_2660 Shewanella sp. W3-18-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_964037.1 3032634 D 351745 CDS YP_964038.1 120599464 4660100 complement(3033239..3034861) 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ilo:IL0610 methyl-accepting chemotaxis protein (contains HAMP domain); methyl-accepting chemotaxis sensory transducer 3034861 4660100 Sputw3181_2661 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_964038.1 3033239 R 351745 CDS YP_964039.1 120599465 4660101 complement(3035406..3036116) 1 NC_008750.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 3036116 4660101 Sputw3181_2662 Shewanella sp. W3-18-1 transcriptional regulator PhoU YP_964039.1 3035406 R 351745 CDS YP_964040.1 120599466 4660103 complement(3036190..3037008) 1 NC_008750.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 3037008 4660103 Sputw3181_2663 Shewanella sp. W3-18-1 phosphate transporter ATP-binding protein YP_964040.1 3036190 R 351745 CDS YP_964041.1 120599467 4660105 complement(3037042..3038700) 1 NC_008750.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: she:Shewmr4_2559 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease 3038700 4660105 Sputw3181_2664 Shewanella sp. W3-18-1 phosphate ABC transporter permease YP_964041.1 3037042 R 351745 CDS YP_964042.1 120599468 4660109 complement(3038760..3041018) 1 NC_008750.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2627 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3041018 4660109 Sputw3181_2665 Shewanella sp. W3-18-1 binding-protein-dependent transport system inner membrane protein YP_964042.1 3038760 R 351745 CDS YP_964043.1 120599469 4660114 3041217..3041717 1 NC_008750.1 PFAM: amino acid-binding ACT domain protein; KEGG: son:SO1722 ACT domain protein; amino acid-binding ACT domain-containing protein 3041717 4660114 Sputw3181_2666 Shewanella sp. W3-18-1 amino acid-binding ACT domain-containing protein YP_964043.1 3041217 D 351745 CDS YP_964044.1 120599470 4660115 3041976..3042800 1 NC_008750.1 KEGG: shm:Shewmr7_2631 hypothetical protein; hypothetical protein 3042800 4660115 Sputw3181_2667 Shewanella sp. W3-18-1 hypothetical protein YP_964044.1 3041976 D 351745 CDS YP_964045.1 120599471 4660116 3043112..3043687 1 NC_008750.1 hypothetical protein 3043687 4660116 Sputw3181_2668 Shewanella sp. W3-18-1 hypothetical protein YP_964045.1 3043112 D 351745 CDS YP_964046.1 120599472 4660122 complement(3043798..3044193) 1 NC_008750.1 KEGG: shm:Shewmr7_2632 hypothetical protein; hypothetical protein 3044193 4660122 Sputw3181_2669 Shewanella sp. W3-18-1 hypothetical protein YP_964046.1 3043798 R 351745 CDS YP_964047.1 120599473 4659369 3044909..3045502 1 NC_008750.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_2634 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3045502 4659369 Sputw3181_2671 Shewanella sp. W3-18-1 lysine exporter protein LysE/YggA YP_964047.1 3044909 D 351745 CDS YP_964048.1 120599474 4660128 3045529..3046083 1 NC_008750.1 PFAM: protein of unknown function DUF1415; KEGG: shm:Shewmr7_2635 protein of unknown function DUF1415; hypothetical protein 3046083 4660128 Sputw3181_2672 Shewanella sp. W3-18-1 hypothetical protein YP_964048.1 3045529 D 351745 CDS YP_964049.1 120599475 4660129 3046156..3046644 1 NC_008750.1 hypothetical protein 3046644 4660129 Sputw3181_2673 Shewanella sp. W3-18-1 hypothetical protein YP_964049.1 3046156 D 351745 CDS YP_964050.1 120599476 4660130 complement(3046749..3048653) 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppu:PP_5020 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 3048653 4660130 Sputw3181_2674 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_964050.1 3046749 R 351745 CDS YP_964051.1 120599477 4660131 complement(3048976..3049506) 1 NC_008750.1 KEGG: son:SO1711 hypothetical protein; hypothetical protein 3049506 4660131 Sputw3181_2675 Shewanella sp. W3-18-1 hypothetical protein YP_964051.1 3048976 R 351745 CDS YP_964052.1 120599478 4660136 complement(3049630..3050103) 1 NC_008750.1 KEGG: son:SO1710 hypothetical protein; hypothetical protein 3050103 4660136 Sputw3181_2676 Shewanella sp. W3-18-1 hypothetical protein YP_964052.1 3049630 R 351745 CDS YP_964053.1 120599479 4660143 complement(3050288..3051574) 1 NC_008750.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: son:SO1708 4-hydroxybutyrate coenzyme A transferase; acetyl-CoA hydrolase/transferase 3051574 4660143 Sputw3181_2677 Shewanella sp. W3-18-1 acetyl-CoA hydrolase/transferase YP_964053.1 3050288 R 351745 CDS YP_964054.1 120599480 4660144 complement(3051839..3052960) 1 NC_008750.1 PFAM: ABC-2 type transporter; KEGG: shm:Shewmr7_2640 ABC-2 type transporter; ABC transporter 3052960 4660144 Sputw3181_2678 Shewanella sp. W3-18-1 ABC transporter YP_964054.1 3051839 R 351745 CDS YP_964055.1 120599481 4660147 complement(3052950..3053903) 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_2574 ABC transporter related; ABC transporter-like protein 3053903 4660147 Sputw3181_2679 Shewanella sp. W3-18-1 ABC transporter-like protein YP_964055.1 3052950 R 351745 CDS YP_964056.1 120599482 4660148 complement(3053900..3054898) 1 NC_008750.1 PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_2575 secretion protein HlyD family protein; secretion protein HlyD family protein 3054898 4660148 Sputw3181_2680 Shewanella sp. W3-18-1 secretion protein HlyD family protein YP_964056.1 3053900 R 351745 CDS YP_964057.1 120599483 4660151 complement(3054898..3055596) 1 NC_008750.1 PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_2643 transcriptional regulator, TetR family; TetR family transcriptional regulator 3055596 4660151 Sputw3181_2681 Shewanella sp. W3-18-1 TetR family transcriptional regulator YP_964057.1 3054898 R 351745 CDS YP_964058.1 120599484 4660154 complement(3055782..3056129) 1 NC_008750.1 KEGG: shm:Shewmr7_2644 hypothetical protein; hypothetical protein 3056129 4660154 Sputw3181_2682 Shewanella sp. W3-18-1 hypothetical protein YP_964058.1 3055782 R 351745 CDS YP_964059.1 120599485 4660156 3056620..3059898 1 NC_008750.1 PFAM: transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: shm:Shewmr7_2647 transcriptional regulator, CadC; transcriptional regulator CadC 3059898 4660156 Sputw3181_2683 Shewanella sp. W3-18-1 transcriptional regulator CadC YP_964059.1 3056620 D 351745 CDS YP_964060.1 120599486 4660159 3059920..3060294 1 NC_008750.1 KEGG: she:Shewmr4_2581 hypothetical protein; hypothetical protein 3060294 4660159 Sputw3181_2684 Shewanella sp. W3-18-1 hypothetical protein YP_964060.1 3059920 D 351745 CDS YP_964061.1 120599487 4660162 complement(3060712..3061746) 1 NC_008750.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: son:SO4548 transposase, IS110 family; transposase IS116/IS110/IS902 family protein 3061746 4660162 Sputw3181_2685 Shewanella sp. W3-18-1 transposase IS116/IS110/IS902 family protein YP_964061.1 3060712 R 351745 CDS YP_964062.1 120599488 4659366 3062241..3062336 1 NC_008750.1 KEGG: shm:Shewmr7_1178 protein of unknown function DUF1568; hypothetical protein 3062336 4659366 Sputw3181_2687 Shewanella sp. W3-18-1 hypothetical protein YP_964062.1 3062241 D 351745 CDS YP_964063.1 120599489 4659362 3062819..3063838 1 NC_008750.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: she:Shewmr4_2582 diguanylate cyclase; PAS/PAC sensor-containing diguanylate cyclase 3063838 4659362 Sputw3181_2689 Shewanella sp. W3-18-1 PAS/PAC sensor-containing diguanylate cyclase YP_964063.1 3062819 D 351745 CDS YP_964064.1 120599490 4660175 3063945..3066620 1 NC_008750.1 PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: shm:Shewmr7_2650 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 3066620 4660175 Sputw3181_2690 Shewanella sp. W3-18-1 FAD linked oxidase domain-containing protein YP_964064.1 3063945 D 351745 CDS YP_964065.1 120599491 4660177 3066809..3067324 1 NC_008750.1 PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: son:SO1691 lipoprotein Blc; lipocalin family protein 3067324 4660177 Sputw3181_2691 Shewanella sp. W3-18-1 lipocalin family protein YP_964065.1 3066809 D 351745 CDS YP_964066.1 120599492 4660178 complement(3067431..3068999) 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1690 ABC transporter, ATP-binding protein; ABC transporter-like protein 3068999 4660178 Sputw3181_2692 Shewanella sp. W3-18-1 ABC transporter-like protein YP_964066.1 3067431 R 351745 CDS YP_964067.1 120599493 4660179 complement(3069371..3071605) 1 NC_008750.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: she:Shewmr4_2587 copper-translocating P-type ATPase; copper-translocating P-type ATPase 3071605 4660179 Sputw3181_2693 Shewanella sp. W3-18-1 copper-translocating P-type ATPase YP_964067.1 3069371 R 351745 CDS YP_964068.1 120599494 4660182 3071736..3072137 1 NC_008750.1 PFAM: regulatory protein, MerR; KEGG: she:Shewmr4_2588 transcriptional regulator, MerR family; MerR family transcriptional regulator 3072137 4660182 Sputw3181_2694 Shewanella sp. W3-18-1 MerR family transcriptional regulator YP_964068.1 3071736 D 351745 CDS YP_964069.1 120599495 4660185 complement(3072145..3074175) 1 NC_008750.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: she:Shewmr4_2589 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 3074175 4660185 Sputw3181_2695 Shewanella sp. W3-18-1 peptidase S9 prolyl oligopeptidase YP_964069.1 3072145 R 351745 CDS YP_964070.1 120599496 4660224 complement(3074236..3074478) 1 NC_008750.1 KEGG: shm:Shewmr7_2657 hypothetical protein; hypothetical protein 3074478 4660224 Sputw3181_2696 Shewanella sp. W3-18-1 hypothetical protein YP_964070.1 3074236 R 351745 CDS YP_964071.1 120599497 4659360 complement(3074950..3075708) 1 NC_008750.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 3075708 fabG 4659360 fabG Shewanella sp. W3-18-1 3-ketoacyl-ACP reductase YP_964071.1 3074950 R 351745 CDS YP_964072.1 120599498 4660263 complement(3075733..3076635) 1 NC_008750.1 KEGG: shm:Shewmr7_2659 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 3076635 4660263 Sputw3181_2699 Shewanella sp. W3-18-1 3-hydroxyisobutyrate dehydrogenase YP_964072.1 3075733 R 351745 CDS YP_964073.1 120599499 4660336 complement(3076777..3077919) 1 NC_008750.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shm:Shewmr7_2660 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3077919 4660336 Sputw3181_2700 Shewanella sp. W3-18-1 enoyl-CoA hydratase/isomerase YP_964073.1 3076777 R 351745 CDS YP_964074.1 120599500 4660225 complement(3077919..3078692) 1 NC_008750.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3078692 4660225 Sputw3181_2701 Shewanella sp. W3-18-1 enoyl-CoA hydratase YP_964074.1 3077919 R 351745 CDS YP_964075.1 120599501 4660540 complement(3078752..3079909) 1 NC_008750.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: shm:Shewmr7_2662 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3079909 4660540 Sputw3181_2702 Shewanella sp. W3-18-1 acyl-CoA dehydrogenase domain-containing protein YP_964075.1 3078752 R 351745 CDS YP_964076.1 120599502 4660545 complement(3079998..3081497) 1 NC_008750.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: she:Shewmr4_2596 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 3081497 4660545 Sputw3181_2703 Shewanella sp. W3-18-1 methylmalonate-semialdehyde dehydrogenase YP_964076.1 3079998 R 351745 CDS YP_964077.1 120599503 4660579 complement(3081660..3082850) 1 NC_008750.1 KEGG: she:Shewmr4_2597 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 3082850 4660579 Sputw3181_2704 Shewanella sp. W3-18-1 acetyl-CoA acetyltransferase YP_964077.1 3081660 R 351745 CDS YP_964078.1 120599504 4660398 3083298..3084932 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vch:VCA0220 hemolysin secretion protein HylB; methyl-accepting chemotaxis sensory transducer 3084932 4660398 Sputw3181_2705 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_964078.1 3083298 D 351745 CDS YP_964079.1 120599505 4660735 complement(3084997..3085953) 1 NC_008750.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 3085953 4660735 Sputw3181_2706 Shewanella sp. W3-18-1 homoserine O-succinyltransferase YP_964079.1 3084997 R 351745 CDS YP_964080.1 120599506 4660746 complement(3086020..3086454) 1 NC_008750.1 KEGG: shm:Shewmr7_2666 hypothetical protein; hypothetical protein 3086454 4660746 Sputw3181_2707 Shewanella sp. W3-18-1 hypothetical protein YP_964080.1 3086020 R 351745 CDS YP_964081.1 120599507 4660783 3086572..3087315 1 NC_008750.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO1674 short chain dehydrogenase family protein; short-chain dehydrogenase/reductase SDR 3087315 4660783 Sputw3181_2708 Shewanella sp. W3-18-1 short-chain dehydrogenase/reductase SDR YP_964081.1 3086572 D 351745 CDS YP_964082.1 120599508 4660791 complement(3087395..3088054) 1 NC_008750.1 receptor for colicin S4; outer membrane protein W 3088054 4660791 Sputw3181_2709 Shewanella sp. W3-18-1 outer membrane protein W YP_964082.1 3087395 R 351745 CDS YP_964083.1 120599509 4660796 complement(3088426..3089082) 1 NC_008750.1 PFAM: protein of unknown function DUF925; KEGG: she:Shewmr4_2602 protein of unknown function DUF925; hypothetical protein 3089082 4660796 Sputw3181_2710 Shewanella sp. W3-18-1 hypothetical protein YP_964083.1 3088426 R 351745 CDS YP_964084.1 120599510 4660804 complement(3089108..3089758) 1 NC_008750.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: son:SO1671 glutathione S-transferase family protein; maleylacetoacetate isomerase 3089758 4660804 Sputw3181_2711 Shewanella sp. W3-18-1 maleylacetoacetate isomerase YP_964084.1 3089108 R 351745 CDS YP_964085.1 120599511 4660806 complement(3089846..3090832) 1 NC_008750.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1670 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase 3090832 4660806 Sputw3181_2712 Shewanella sp. W3-18-1 fumarylacetoacetate (FAA) hydrolase YP_964085.1 3089846 R 351745 CDS YP_964086.1 120599512 4660809 complement(3091213..3092751) 1 NC_008750.1 PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_2672 transcriptional regulator, TyrR; transcriptional regulator TyrR 3092751 4660809 Sputw3181_2713 Shewanella sp. W3-18-1 transcriptional regulator TyrR YP_964086.1 3091213 R 351745 CDS YP_964087.1 120599513 4660820 complement(3093010..3093348) 1 NC_008750.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 3093348 phhB 4660820 phhB Shewanella sp. W3-18-1 pterin-4-alpha-carbinolamine dehydratase YP_964087.1 3093010 R 351745 CDS YP_964088.1 120599514 4660823 complement(3093443..3094243) 1 NC_008750.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 3094243 phhA 4660823 phhA Shewanella sp. W3-18-1 phenylalanine 4-monooxygenase YP_964088.1 3093443 R 351745 CDS YP_964089.1 120599515 4660824 3094555..3095463 1 NC_008750.1 KEGG: shm:Shewmr7_2675 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase GalU 3095463 4660824 Sputw3181_2716 Shewanella sp. W3-18-1 UTP-glucose-1-phosphate uridylyltransferase GalU YP_964089.1 3094555 D 351745 CDS YP_964090.1 120599516 4660837 3095463..3096476 1 NC_008750.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: she:Shewmr4_2609 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 3096476 4660837 Sputw3181_2717 Shewanella sp. W3-18-1 UDP-glucose 4-epimerase YP_964090.1 3095463 D 351745 CDS YP_964091.1 120599517 4660854 3096547..3097053 1 NC_008750.1 TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_2677 ferredoxin-type protein NapF; ferredoxin-type protein NapF 3097053 4660854 Sputw3181_2718 Shewanella sp. W3-18-1 ferredoxin-type protein NapF YP_964091.1 3096547 D 351745 CDS YP_964092.1 120599518 4660857 3097142..3097555 1 NC_008750.1 PFAM: protein of unknown function DUF583; KEGG: shm:Shewmr7_2678 protein of unknown function DUF583; hypothetical protein 3097555 4660857 Sputw3181_2719 Shewanella sp. W3-18-1 hypothetical protein YP_964092.1 3097142 D 351745 CDS YP_964093.1 120599519 4660416 3097871..3098845 1 NC_008750.1 PFAM: regulatory protein, LysR; KEGG: son:SO1661 transcriptional regulator, LysR family; LysR family transcriptional regulator 3098845 4660416 Sputw3181_2720 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_964093.1 3097871 D 351745 CDS YP_964094.1 120599520 4660860 3099253..3101559 1 NC_008750.1 KEGG: son:SO1659 decaheme cytochrome c; decaheme cytochrome c 3101559 4660860 Sputw3181_2721 Shewanella sp. W3-18-1 decaheme cytochrome c YP_964094.1 3099253 D 351745 CDS YP_964095.1 120599521 4660875 complement(3102770..3103303) 1 NC_008750.1 hypothetical protein 3103303 4660875 Sputw3181_2722 Shewanella sp. W3-18-1 hypothetical protein YP_964095.1 3102770 R 351745 CDS YP_964096.1 120599522 4660996 complement(3105216..3105596) 1 NC_008750.1 hypothetical protein 3105596 4660996 Sputw3181_2725 Shewanella sp. W3-18-1 hypothetical protein YP_964096.1 3105216 R 351745 CDS YP_964097.1 120599523 4660884 complement(3105599..3107620) 1 NC_008750.1 TIGRFAM: YD repeat protein; KEGG: shm:Shewmr7_1124 YD repeat protein; YD repeat-containing protein 3107620 4660884 Sputw3181_2726 Shewanella sp. W3-18-1 YD repeat-containing protein YP_964097.1 3105599 R 351745 CDS YP_964098.1 120599524 4660885 complement(3107946..3108194) 1 NC_008750.1 hypothetical protein 3108194 4660885 Sputw3181_2727 Shewanella sp. W3-18-1 hypothetical protein YP_964098.1 3107946 R 351745 CDS YP_964099.1 120599525 4657921 complement(3108207..3115625) 1 NC_008750.1 TIGRFAM: YD repeat protein; PFAM: Fibronectin, type III domain protein; YD repeat-containing protein; FG-GAP repeat protein; KEGG: shm:Shewmr7_1124 YD repeat protein; YD repeat-containing protein 3115625 4657921 Sputw3181_2728 Shewanella sp. W3-18-1 YD repeat-containing protein YP_964099.1 3108207 R 351745 CDS YP_964100.1 120599526 4661854 complement(3115844..3116440) 1 NC_008750.1 PFAM: phage integrase family protein; KEGG: shm:Shewmr7_3899 phage integrase family protein; phage integrase family protein 3116440 4661854 Sputw3181_2729 Shewanella sp. W3-18-1 phage integrase family protein YP_964100.1 3115844 R 351745 CDS YP_964101.1 120599527 4661837 complement(3116679..3117353) 1 NC_008750.1 KEGG: shm:Shewmr7_2681 hypothetical protein; hypothetical protein 3117353 4661837 Sputw3181_2730 Shewanella sp. W3-18-1 hypothetical protein YP_964101.1 3116679 R 351745 CDS YP_964102.1 120599528 4661810 complement(3117357..3118052) 1 NC_008750.1 PFAM: protein of unknown function DUF218; KEGG: son:SO1657 hypothetical protein; hypothetical protein 3118052 4661810 Sputw3181_2731 Shewanella sp. W3-18-1 hypothetical protein YP_964102.1 3117357 R 351745 CDS YP_964103.1 120599529 4661600 complement(3118200..3119117) 1 NC_008750.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 3119117 4661600 Sputw3181_2732 Shewanella sp. W3-18-1 fructokinase YP_964103.1 3118200 R 351745 CDS YP_964104.1 120599530 4660346 complement(3119190..3120011) 1 NC_008750.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: shm:Shewmr7_2684 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 3120011 4660346 Sputw3181_2733 Shewanella sp. W3-18-1 3'(2'),5'-bisphosphate nucleotidase YP_964104.1 3119190 R 351745 CDS YP_964105.1 120599531 4661198 complement(3120105..3120860) 1 NC_008750.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: she:Shewmr4_2619 PHP C-terminal domain protein; putative hydrolase 3120860 4661198 Sputw3181_2734 Shewanella sp. W3-18-1 putative hydrolase YP_964105.1 3120105 R 351745 CDS YP_964106.1 120599532 4661186 complement(3120909..3124130) 1 NC_008750.1 PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_2687 SNF2-related protein; SNF2-like protein 3124130 4661186 Sputw3181_2735 Shewanella sp. W3-18-1 SNF2-like protein YP_964106.1 3120909 R 351745 CDS YP_964107.1 120599533 4661126 complement(3124359..3126203) 1 NC_008750.1 PFAM: protein of unknown function DUF885; KEGG: she:Shewmr4_2621 protein of unknown function DUF885; hypothetical protein 3126203 4661126 Sputw3181_2736 Shewanella sp. W3-18-1 hypothetical protein YP_964107.1 3124359 R 351745 CDS YP_964108.1 120599534 4661135 3126980..3127189 1 NC_008750.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: shm:Shewmr7_2689 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 3127189 4661135 Sputw3181_2737 Shewanella sp. W3-18-1 cold-shock DNA-binding domain-containing protein YP_964108.1 3126980 D 351745 CDS YP_964109.1 120599535 4661122 3127543..3128421 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1646 GGDEF family protein; diguanylate cyclase 3128421 4661122 Sputw3181_2738 Shewanella sp. W3-18-1 diguanylate cyclase YP_964109.1 3127543 D 351745 CDS YP_964110.1 120599536 4661105 complement(3128484..3129881) 1 NC_008750.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: she:Shewmr4_2625 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase 3129881 4661105 Sputw3181_2739 Shewanella sp. W3-18-1 tRNA(Ile)-lysidine synthetase YP_964110.1 3128484 R 351745 CDS YP_964111.1 120599537 4661114 complement(3129941..3133414) 1 NC_008750.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 3133414 dnaE 4661114 dnaE Shewanella sp. W3-18-1 DNA polymerase III subunit alpha YP_964111.1 3129941 R 351745 CDS YP_964112.1 120599538 4661069 complement(3133532..3134161) 1 NC_008750.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 3134161 rnhB 4661069 rnhB Shewanella sp. W3-18-1 ribonuclease HII YP_964112.1 3133532 R 351745 CDS YP_964113.1 120599539 4661059 complement(3134164..3135318) 1 NC_008750.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 3135318 lpxB 4661059 lpxB Shewanella sp. W3-18-1 lipid-A-disaccharide synthase YP_964113.1 3134164 R 351745 CDS YP_964114.1 120599540 4661020 complement(3135441..3136211) 1 NC_008750.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 3136211 4661020 Sputw3181_2743 Shewanella sp. W3-18-1 UDP-N-acetylglucosamine acyltransferase YP_964114.1 3135441 R 351745 CDS YP_964115.1 120599541 4661061 complement(3136208..3136672) 1 NC_008750.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 3136672 fabZ 4661061 fabZ Shewanella sp. W3-18-1 (3R)-hydroxymyristoyl-ACP dehydratase YP_964115.1 3136208 R 351745 CDS YP_964116.1 120599542 4658598 complement(3136702..3137727) 1 NC_008750.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 3137727 lpxD 4658598 lpxD Shewanella sp. W3-18-1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_964116.1 3136702 R 351745 CDS YP_964117.1 120599543 4661876 complement(3137731..3138228) 1 NC_008750.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: shm:Shewmr7_2699 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 3138228 4661876 Sputw3181_2746 Shewanella sp. W3-18-1 outer membrane chaperone Skp YP_964117.1 3137731 R 351745 CDS YP_964118.1 120599544 4661864 complement(3138293..3140773) 1 NC_008750.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: shm:Shewmr7_2700 surface antigen (D15); surface antigen (D15) 3140773 4661864 Sputw3181_2747 Shewanella sp. W3-18-1 surface antigen (D15) YP_964118.1 3138293 R 351745 CDS YP_964119.1 120599545 4661860 complement(3140805..3142175) 1 NC_008750.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: shm:Shewmr7_2701 putative membrane-associated zinc metalloprotease; putative membrane-associated zinc metalloprotease 3142175 4661860 Sputw3181_2748 Shewanella sp. W3-18-1 putative membrane-associated zinc metalloprotease YP_964119.1 3140805 R 351745 CDS YP_964120.1 120599546 4661856 complement(3142218..3143399) 1 NC_008750.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3143399 4661856 Sputw3181_2749 Shewanella sp. W3-18-1 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_964120.1 3142218 R 351745 CDS YP_964121.1 120599547 4661841 complement(3143413..3144270) 1 NC_008750.1 PFAM: phosphatidate cytidylyltransferase; KEGG: shm:Shewmr7_2703 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 3144270 4661841 Sputw3181_2750 Shewanella sp. W3-18-1 phosphatidate cytidylyltransferase YP_964121.1 3143413 R 351745 CDS YP_964122.1 120599548 4661715 complement(3144291..3145118) 1 NC_008750.1 KEGG: son:SO1633 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 3145118 4661715 Sputw3181_2751 Shewanella sp. W3-18-1 undecaprenyl diphosphate synthase YP_964122.1 3144291 R 351745 CDS YP_964123.1 120599549 4661830 complement(3145201..3145758) 1 NC_008750.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 3145758 frr 4661830 frr Shewanella sp. W3-18-1 ribosome recycling factor YP_964123.1 3145201 R 351745 CDS YP_964124.1 120599550 4661798 complement(3145780..3146517) 1 NC_008750.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 3146517 pyrH 4661798 pyrH Shewanella sp. W3-18-1 uridylate kinase YP_964124.1 3145780 R 351745 CDS YP_964125.1 120599551 4661816 complement(3146586..3147437) 1 NC_008750.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 3147437 tsf 4661816 tsf Shewanella sp. W3-18-1 elongation factor Ts YP_964125.1 3146586 R 351745 CDS YP_964126.1 120599552 4661789 complement(3147558..3148286) 1 NC_008750.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 3148286 rpsB 4661789 rpsB Shewanella sp. W3-18-1 30S ribosomal protein S2 YP_964126.1 3147558 R 351745 CDS YP_964127.1 120599553 4661769 3148595..3149395 1 NC_008750.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 3149395 4661769 Sputw3181_2756 Shewanella sp. W3-18-1 methionine aminopeptidase YP_964127.1 3148595 D 351745 CDS YP_964128.1 120599554 4661749 3149418..3152000 1 NC_008750.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3152000 4661749 Sputw3181_2757 Shewanella sp. W3-18-1 PII uridylyl-transferase YP_964128.1 3149418 D 351745 CDS YP_964129.1 120599555 4660342 3152026..3152850 1 NC_008750.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 3152850 dapD 4660342 dapD Shewanella sp. W3-18-1 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_964129.1 3152026 D 351745 CDS YP_964130.1 120599556 4661721 complement(3152920..3154851) 1 NC_008750.1 KEGG: shm:Shewmr7_2713 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: CBS domain containing protein; GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 3154851 4661721 Sputw3181_2759 Shewanella sp. W3-18-1 metal dependent phosphohydrolase YP_964130.1 3152920 R 351745 CDS YP_964131.1 120599557 4661710 complement(3155025..3155975) 1 NC_008750.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 3155975 purU 4661710 purU Shewanella sp. W3-18-1 formyltetrahydrofolate deformylase YP_964131.1 3155025 R 351745 CDS YP_964132.1 120599558 4661727 complement(3156090..3157571) 1 NC_008750.1 TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: shm:Shewmr7_2715 PTS system, glucose-like IIB subunint; PTS system glucose-like transporter subunit IIB 3157571 4661727 Sputw3181_2761 Shewanella sp. W3-18-1 PTS system glucose-like transporter subunit IIB YP_964132.1 3156090 R 351745 CDS YP_964133.1 120599559 4661720 complement(3157523..3157987) 1 NC_008750.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 3157987 4661720 Sputw3181_2762 Shewanella sp. W3-18-1 flavodoxin YP_964133.1 3157523 R 351745 CDS YP_964134.1 120599560 4661704 3158112..3158294 1 NC_008750.1 hypothetical protein 3158294 4661704 Sputw3181_2763 Shewanella sp. W3-18-1 hypothetical protein YP_964134.1 3158112 D 351745 CDS YP_964135.1 120599561 4661701 complement(3158378..3159220) 1 NC_008750.1 PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_2717 pseudouridylate synthase; pseudouridylate synthase 3159220 4661701 Sputw3181_2764 Shewanella sp. W3-18-1 pseudouridylate synthase YP_964135.1 3158378 R 351745 CDS YP_964136.1 120599562 4661657 complement(3159207..3159527) 1 NC_008750.1 PFAM: protein of unknown function DUF446; KEGG: shm:Shewmr7_2718 protein of unknown function DUF446; hypothetical protein 3159527 4661657 Sputw3181_2765 Shewanella sp. W3-18-1 hypothetical protein YP_964136.1 3159207 R 351745 CDS YP_964137.1 120599563 4661679 3159677..3160690 1 NC_008750.1 KEGG: she:Shewmr4_2652 hypothetical protein; hypothetical protein 3160690 4661679 Sputw3181_2766 Shewanella sp. W3-18-1 hypothetical protein YP_964137.1 3159677 D 351745 CDS YP_964138.1 120599564 4661670 3160687..3161073 1 NC_008750.1 KEGG: son:SO1617 hypothetical protein; hypothetical protein 3161073 4661670 Sputw3181_2767 Shewanella sp. W3-18-1 hypothetical protein YP_964138.1 3160687 D 351745 CDS YP_964139.1 120599565 4661663 complement(3162362..3163000) 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1614 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3163000 4661663 Sputw3181_2768 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_964139.1 3162362 R 351745 CDS YP_964140.1 120599566 4661659 3163151..3163384 1 NC_008750.1 KEGG: son:SO1613 hypothetical protein; hypothetical protein 3163384 4661659 Sputw3181_2769 Shewanella sp. W3-18-1 hypothetical protein YP_964140.1 3163151 D 351745 CDS YP_964141.1 120599567 4661641 complement(3163416..3163811) 1 NC_008750.1 KEGG: shm:Shewmr7_2724 hypothetical protein; hypothetical protein 3163811 4661641 Sputw3181_2770 Shewanella sp. W3-18-1 hypothetical protein YP_964141.1 3163416 R 351745 CDS YP_964142.1 120599568 4661636 3163957..3164340 1 NC_008750.1 KEGG: shm:Shewmr7_2725 hypothetical protein; hypothetical protein 3164340 4661636 Sputw3181_2771 Shewanella sp. W3-18-1 hypothetical protein YP_964142.1 3163957 D 351745 CDS YP_964143.1 120599569 4661364 3164340..3165113 1 NC_008750.1 KEGG: son:SO1610 hypothetical protein; hypothetical protein 3165113 4661364 Sputw3181_2772 Shewanella sp. W3-18-1 hypothetical protein YP_964143.1 3164340 D 351745 CDS YP_964144.1 120599570 4661582 complement(3165212..3165862) 1 NC_008750.1 putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 3165862 4661582 Sputw3181_2773 Shewanella sp. W3-18-1 SecY interacting protein Syd YP_964144.1 3165212 R 351745 CDS YP_964145.1 120599571 4661639 3165889..3166779 1 NC_008750.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3166779 queF 4661639 queF Shewanella sp. W3-18-1 7-cyano-7-deazaguanine reductase YP_964145.1 3165889 D 351745 CDS YP_964146.1 120599572 4661620 complement(3166882..3167805) 1 NC_008750.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: shm:Shewmr7_2731 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase 3167805 4661620 Sputw3181_2775 Shewanella sp. W3-18-1 4'-phosphopantetheinyl transferase YP_964146.1 3166882 R 351745 CDS YP_964147.1 120599573 4661627 3168198..3169067 1 NC_008750.1 KEGG: shm:Shewmr7_2732 transcriptional regulator, putative; transcriptional regulator 3169067 4661627 Sputw3181_2776 Shewanella sp. W3-18-1 transcriptional regulator YP_964147.1 3168198 D 351745 CDS YP_964148.1 120599574 4661607 3169064..3176998 1 NC_008750.1 PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_2733 beta-ketoacyl synthase; erythronolide synthase 3176998 4661607 Sputw3181_2777 Shewanella sp. W3-18-1 erythronolide synthase YP_964148.1 3169064 D 351745 CDS YP_964149.1 120599575 4661602 3176995..3179304 1 NC_008750.1 KEGG: shm:Shewmr7_2734 omega-3 polyunsaturated fatty acid synthase PfaB; omega-3 polyunsaturated fatty acid synthase PfaB 3179304 4661602 Sputw3181_2778 Shewanella sp. W3-18-1 omega-3 polyunsaturated fatty acid synthase PfaB YP_964149.1 3176995 D 351745 CDS YP_964150.1 120599576 4661588 3179301..3185258 1 NC_008750.1 PFAM: beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: she:Shewmr4_2668 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ 3185258 4661588 Sputw3181_2779 Shewanella sp. W3-18-1 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_964150.1 3179301 D 351745 CDS YP_964151.1 120599577 4661591 3185363..3187021 1 NC_008750.1 KEGG: shm:Shewmr7_2736 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 3187021 4661591 Sputw3181_2780 Shewanella sp. W3-18-1 2-nitropropane dioxygenase YP_964151.1 3185363 D 351745 CDS YP_964152.1 120599578 4661583 3187333..3187509 1 NC_008750.1 PFAM: protein of unknown function DUF1328; KEGG: shm:Shewmr7_2739 protein of unknown function DUF1328; hypothetical protein 3187509 4661583 Sputw3181_2781 Shewanella sp. W3-18-1 hypothetical protein YP_964152.1 3187333 D 351745 CDS YP_964153.1 120599579 4661595 3187534..3187728 1 NC_008750.1 KEGG: shm:Shewmr7_2740 hypothetical protein; hypothetical protein 3187728 4661595 Sputw3181_2782 Shewanella sp. W3-18-1 hypothetical protein YP_964153.1 3187534 D 351745 CDS YP_964154.1 120599580 4661273 3187880..3189562 1 NC_008750.1 PFAM: Dual specificity protein phosphatase; diacylglycerol kinase, catalytic region; KEGG: she:Shewmr4_2673 dual specificity protein phosphatase; hypothetical protein 3189562 4661273 Sputw3181_2783 Shewanella sp. W3-18-1 hypothetical protein YP_964154.1 3187880 D 351745 CDS YP_964155.1 120599581 4661536 complement(3189640..3191013) 1 NC_008750.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_2742 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 3191013 4661536 Sputw3181_2784 Shewanella sp. W3-18-1 sigma-54 dependent trancsriptional regulator YP_964155.1 3189640 R 351745 CDS YP_964156.1 120599582 4660348 3191249..3191698 1 NC_008750.1 KEGG: shm:Shewmr7_2743 hypothetical protein; hypothetical protein 3191698 4660348 Sputw3181_2785 Shewanella sp. W3-18-1 hypothetical protein YP_964156.1 3191249 D 351745 CDS YP_964157.1 120599583 4661525 3191926..3192471 1 NC_008750.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: shm:Shewmr7_2744 transport-associated; transport-associated 3192471 4661525 Sputw3181_2786 Shewanella sp. W3-18-1 transport-associated YP_964157.1 3191926 D 351745 CDS YP_964158.1 120599584 4661517 complement(3192633..3193421) 1 NC_008750.1 KEGG: son:SO1589 hypothetical protein; hypothetical protein 3193421 4661517 Sputw3181_2787 Shewanella sp. W3-18-1 hypothetical protein YP_964158.1 3192633 R 351745 CDS YP_964159.1 120599585 4661522 3193752..3193994 1 NC_008750.1 KEGG: she:Shewmr4_2686 hypothetical protein; hypothetical protein 3193994 4661522 Sputw3181_2788 Shewanella sp. W3-18-1 hypothetical protein YP_964159.1 3193752 D 351745 CDS YP_964160.1 120599586 4661520 complement(3194105..3194731) 1 NC_008750.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1585 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase 3194731 4661520 Sputw3181_2789 Shewanella sp. W3-18-1 fumarylacetoacetate (FAA) hydrolase YP_964160.1 3194105 R 351745 CDS YP_964161.1 120599587 4661153 3194903..3196930 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: sdn:Sden_2638 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3196930 4661153 Sputw3181_2790 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_964161.1 3194903 D 351745 CDS YP_964162.1 120599588 4661478 complement(3196936..3197949) 1 NC_008750.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO1583 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 3197949 4661478 Sputw3181_2791 Shewanella sp. W3-18-1 succinylglutamate desuccinylase/aspartoacylase YP_964162.1 3196936 R 351745 CDS YP_964163.1 120599589 4661465 complement(3198075..3198653) 1 NC_008750.1 PFAM: regulatory protein, MarR; KEGG: shm:Shewmr7_2759 transcriptional regulator, MarR family; MarR family transcriptional regulator 3198653 4661465 Sputw3181_2792 Shewanella sp. W3-18-1 MarR family transcriptional regulator YP_964163.1 3198075 R 351745 CDS YP_964164.1 120599590 4661440 3198884..3200089 1 NC_008750.1 PFAM: major facilitator superfamily MFS_1; KEGG: pau:PA14_03550 putative MFS transporter; major facilitator superfamily transporter 3200089 4661440 Sputw3181_2793 Shewanella sp. W3-18-1 major facilitator superfamily transporter YP_964164.1 3198884 D 351745 CDS YP_964165.1 120599591 4661446 complement(3200188..3200751) 1 NC_008750.1 PFAM: PhnA protein-like; SMART: PhnA protein N-terminal, proteobacterial; KEGG: son:SO1581 PhnA protein; putative PhnA protein 3200751 4661446 Sputw3181_2794 Shewanella sp. W3-18-1 putative PhnA protein YP_964165.1 3200188 R 351745 CDS YP_964166.1 120599592 4661448 complement(3200886..3203099) 1 NC_008750.1 TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1580 TonB-dependent heme receptor; TonB-dependent heme/hemoglobin receptor family protein 3203099 4661448 Sputw3181_2795 Shewanella sp. W3-18-1 TonB-dependent heme/hemoglobin receptor family protein YP_964166.1 3200886 R 351745 CDS YP_964167.1 120599593 4661423 3203414..3204127 1 NC_008750.1 KEGG: she:Shewmr4_2693 hypothetical protein; hypothetical protein 3204127 4661423 Sputw3181_2796 Shewanella sp. W3-18-1 hypothetical protein YP_964167.1 3203414 D 351745 CDS YP_964168.1 120599594 4661390 3204145..3204813 1 NC_008750.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: shm:Shewmr7_2764 glutathione S-transferase, N-terminal domain protein; glutathione S-transferase domain-containing protein 3204813 4661390 Sputw3181_2797 Shewanella sp. W3-18-1 glutathione S-transferase domain-containing protein YP_964168.1 3204145 D 351745 CDS YP_964169.1 120599595 4661339 3205053..3206444 1 NC_008750.1 PFAM: Fmu (Sun) domain protein; KEGG: son:SO1575 NOL1/NOP2/sun family putative RNA methylase; Fmu (Sun) domain-containing protein 3206444 4661339 Sputw3181_2798 Shewanella sp. W3-18-1 Fmu (Sun) domain-containing protein YP_964169.1 3205053 D 351745 CDS YP_964170.1 120599596 4661326 3206694..3206891 1 NC_008750.1 KEGG: she:Shewmr4_2698 hypothetical protein; hypothetical protein 3206891 4661326 Sputw3181_2799 Shewanella sp. W3-18-1 hypothetical protein YP_964170.1 3206694 D 351745 CDS YP_964171.1 120599597 4661306 complement(3207189..3207728) 1 NC_008750.1 PFAM: YfaZ family protein; KEGG: she:Shewmr4_2702 YfaZ family protein; hypothetical protein 3207728 4661306 Sputw3181_2800 Shewanella sp. W3-18-1 hypothetical protein YP_964171.1 3207189 R 351745 CDS YP_964172.1 120599598 4661146 complement(3207893..3208414) 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_2703 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3208414 4661146 Sputw3181_2801 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_964172.1 3207893 R 351745 CDS YP_964173.1 120599599 4661304 complement(3208459..3209913) 1 NC_008750.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: she:Shewmr4_2704 MgtE intracellular region; magnesium transporter 3209913 4661304 Sputw3181_2802 Shewanella sp. W3-18-1 magnesium transporter YP_964173.1 3208459 R 351745 CDS YP_964174.1 120599600 4661287 3209977..3210462 1 NC_008750.1 PFAM: glutathione peroxidase; KEGG: she:Shewmr4_2705 glutathione peroxidase; glutathione peroxidase 3210462 4661287 Sputw3181_2803 Shewanella sp. W3-18-1 glutathione peroxidase YP_964174.1 3209977 D 351745 CDS YP_964175.1 120599601 4661194 complement(3211027..3212865) 1 NC_008750.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1561 peptidase, M1 family; peptidase M1, membrane alanine aminopeptidase 3212865 4661194 Sputw3181_2804 Shewanella sp. W3-18-1 peptidase M1, membrane alanine aminopeptidase YP_964175.1 3211027 R 351745 CDS YP_964176.1 120599602 4661282 complement(3213331..3214302) 1 NC_008750.1 TIGRFAM: phosphate binding protein; KEGG: she:Shewmr4_2707 phosphate binding protein; phosphate binding protein 3214302 4661282 Sputw3181_2805 Shewanella sp. W3-18-1 phosphate binding protein YP_964176.1 3213331 R 351745 CDS YP_964177.1 120599603 4661254 complement(3214529..3215827) 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: son:SO1559 phosphate regulon sensor protein PhoR; PAS/PAC sensor signal transduction histidine kinase 3215827 4661254 Sputw3181_2806 Shewanella sp. W3-18-1 PAS/PAC sensor signal transduction histidine kinase YP_964177.1 3214529 R 351745 CDS YP_964178.1 120599604 4661272 complement(3215907..3216596) 1 NC_008750.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_2777 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3216596 4661272 Sputw3181_2807 Shewanella sp. W3-18-1 two component transcriptional regulator YP_964178.1 3215907 R 351745 CDS YP_964179.1 120599605 4661268 complement(3216783..3217748) 1 NC_008750.1 PFAM: porin, Gram-negative type; KEGG: son:SO1557 outer membrane porin, putative; porin 3217748 4661268 Sputw3181_2808 Shewanella sp. W3-18-1 porin YP_964179.1 3216783 R 351745 CDS YP_964180.1 120599606 4661167 3218040..3218954 1 NC_008750.1 Required for efficient pilin antigenic variation; recombination associated protein 3218954 rdgC 4661167 rdgC Shewanella sp. W3-18-1 recombination associated protein YP_964180.1 3218040 D 351745 CDS YP_964181.1 120599607 4661260 complement(3219036..3220847) 1 NC_008750.1 PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: she:Shewmr4_2712 peptidase M61 domain protein; peptidase M61 domain-containing protein 3220847 4661260 Sputw3181_2810 Shewanella sp. W3-18-1 peptidase M61 domain-containing protein YP_964181.1 3219036 R 351745 CDS YP_964182.1 120599608 4661237 3220982..3223153 1 NC_008750.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_2781 TPR repeat-containing protein; hypothetical protein 3223153 4661237 Sputw3181_2811 Shewanella sp. W3-18-1 hypothetical protein YP_964182.1 3220982 D 351745 CDS YP_964183.1 120599609 4661185 3223306..3224862 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_2782 diguanylate cyclase; diguanylate cyclase 3224862 4661185 Sputw3181_2812 Shewanella sp. W3-18-1 diguanylate cyclase YP_964183.1 3223306 D 351745 CDS YP_964184.1 120599610 4660715 3224918..3226273 1 NC_008750.1 PFAM: conserved hypothetical protein 730; KEGG: shm:Shewmr7_2783 conserved hypothetical protein 730; hypothetical protein 3226273 4660715 Sputw3181_2813 Shewanella sp. W3-18-1 hypothetical protein YP_964184.1 3224918 D 351745 CDS YP_964185.1 120599611 4661362 3226295..3227083 1 NC_008750.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3227083 xni 4661362 xni Shewanella sp. W3-18-1 exonuclease IX YP_964185.1 3226295 D 351745 CDS YP_964186.1 120599612 4660385 3227194..3227619 1 NC_008750.1 KEGG: she:Shewmr4_2717 hypothetical protein; hypothetical protein 3227619 4660385 Sputw3181_2815 Shewanella sp. W3-18-1 hypothetical protein YP_964186.1 3227194 D 351745 CDS YP_964187.1 120599613 4660384 complement(3227768..3229270) 1 NC_008750.1 PFAM: transposase IS66; KEGG: pha:PSHAa0410 transposase; transposase IS66 3229270 4660384 Sputw3181_2816 Shewanella sp. W3-18-1 transposase IS66 YP_964187.1 3227768 R 351745 CDS YP_964188.1 120599614 4661466 complement(3229351..3229701) 1 NC_008750.1 PFAM: IS66 Orf2 family protein; KEGG: pha:PSHAa0409 hypothetical protein; IS66 Orf2 family protein 3229701 4661466 Sputw3181_2817 Shewanella sp. W3-18-1 IS66 Orf2 family protein YP_964188.1 3229351 R 351745 CDS YP_964189.1 120599615 4660374 complement(3229698..3230054) 1 NC_008750.1 hypothetical protein 3230054 4660374 Sputw3181_2818 Shewanella sp. W3-18-1 hypothetical protein YP_964189.1 3229698 R 351745 CDS YP_964190.1 120599616 4660370 complement(3230104..3232905) 1 NC_008750.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: she:Shewmr4_2719 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 3232905 4660370 Sputw3181_2819 Shewanella sp. W3-18-1 peptidase S9 prolyl oligopeptidase YP_964190.1 3230104 R 351745 CDS YP_964191.1 120599617 4660356 3233159..3234169 1 NC_008750.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 3234169 4660356 Sputw3181_2820 Shewanella sp. W3-18-1 isocitrate dehydrogenase YP_964191.1 3233159 D 351745 CDS YP_964192.1 120599618 4660353 complement(3234267..3235352) 1 NC_008750.1 KEGG: son:SO1536 hypothetical protein; putative RNA 2'-O-ribose methyltransferase 3235352 4660353 Sputw3181_2821 Shewanella sp. W3-18-1 putative RNA 2'-O-ribose methyltransferase YP_964192.1 3234267 R 351745 CDS YP_964193.1 120599619 4661017 complement(3235530..3235961) 1 NC_008750.1 PFAM: protein of unknown function DUF423; KEGG: son:SO1535 hypothetical protein; hypothetical protein 3235961 4661017 Sputw3181_2822 Shewanella sp. W3-18-1 hypothetical protein YP_964193.1 3235530 R 351745 CDS YP_964194.1 120599620 4660483 complement(3235951..3236625) 1 NC_008750.1 KEGG: shm:Shewmr7_2794 hypothetical protein; hypothetical protein 3236625 4660483 Sputw3181_2823 Shewanella sp. W3-18-1 hypothetical protein YP_964194.1 3235951 R 351745 CDS YP_964195.1 120599621 4659838 complement(3236606..3237517) 1 NC_008750.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3237517 4659838 Sputw3181_2824 Shewanella sp. W3-18-1 DNA-binding transcriptional activator GcvA YP_964195.1 3236606 R 351745 CDS YP_964196.1 120599622 4659827 3237695..3237934 1 NC_008750.1 KEGG: shm:Shewmr7_2796 hypothetical protein; hypothetical protein 3237934 4659827 Sputw3181_2825 Shewanella sp. W3-18-1 hypothetical protein YP_964196.1 3237695 D 351745 CDS YP_964197.1 120599623 4659128 complement(3238020..3239474) 1 NC_008750.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 3239474 4659128 Sputw3181_2826 Shewanella sp. W3-18-1 thiamine biosynthesis protein ThiI YP_964197.1 3238020 R 351745 CDS YP_964198.1 120599624 4659121 complement(3239688..3240614) 1 NC_008750.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB 3240614 motB 4659121 motB Shewanella sp. W3-18-1 flagellar motor protein MotB YP_964198.1 3239688 R 351745 CDS YP_964199.1 120599625 4657770 complement(3240618..3241385) 1 NC_008750.1 Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA 3241385 4657770 Sputw3181_2828 Shewanella sp. W3-18-1 flagellar motor protein PomA YP_964199.1 3240618 R 351745 CDS YP_964200.1 120599626 4659817 3241697..3241936 1 NC_008750.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: shm:Shewmr7_2802 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 3241936 4659817 Sputw3181_2829 Shewanella sp. W3-18-1 exodeoxyribonuclease VII small subunit YP_964200.1 3241697 D 351745 CDS YP_964201.1 120599627 4659102 3241939..3242820 1 NC_008750.1 PFAM: Polyprenyl synthetase; KEGG: son:SO1526 geranyltranstransferase; polyprenyl synthetase 3242820 4659102 Sputw3181_2830 Shewanella sp. W3-18-1 polyprenyl synthetase YP_964201.1 3241939 D 351745 CDS YP_964202.1 120599628 4661758 3242842..3244710 1 NC_008750.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3244710 4661758 Sputw3181_2831 Shewanella sp. W3-18-1 1-deoxy-D-xylulose-5-phosphate synthase YP_964202.1 3242842 D 351745 CDS YP_964203.1 120599629 4657736 complement(3244815..3245435) 1 NC_008750.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 3245435 4657736 Sputw3181_2832 Shewanella sp. W3-18-1 heat shock protein GrpE YP_964203.1 3244815 R 351745 CDS YP_964204.1 120599630 4657731 3245485..3246414 1 NC_008750.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3246414 ppnK 4657731 ppnK Shewanella sp. W3-18-1 inorganic polyphosphate/ATP-NAD kinase YP_964204.1 3245485 D 351745 CDS YP_964205.1 120599631 4661374 3247261..3248904 1 NC_008750.1 PFAM: L-lactate permease; KEGG: son:SO1522 L-lactate permease, putative; L-lactate permease 3248904 4661374 Sputw3181_2834 Shewanella sp. W3-18-1 L-lactate permease YP_964205.1 3247261 D 351745 CDS YP_964206.1 120599632 4657722 3248984..3251788 1 NC_008750.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: son:SO1521 iron-sulfur cluster-binding protein; FAD linked oxidase domain-containing protein 3251788 4657722 Sputw3181_2835 Shewanella sp. W3-18-1 FAD linked oxidase domain-containing protein YP_964206.1 3248984 D 351745 CDS YP_964207.1 120599633 4657717 3252101..3252844 1 NC_008750.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: she:Shewmr4_2736 protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein 3252844 4657717 Sputw3181_2836 Shewanella sp. W3-18-1 hypothetical protein YP_964207.1 3252101 D 351745 CDS YP_964208.1 120599634 4661509 3252855..3254249 1 NC_008750.1 KEGG: shm:Shewmr7_2810 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3254249 4661509 Sputw3181_2837 Shewanella sp. W3-18-1 4Fe-4S ferredoxin YP_964208.1 3252855 D 351745 CDS YP_964209.1 120599635 4661242 3254251..3254820 1 NC_008750.1 PFAM: protein of unknown function DUF162; KEGG: she:Shewmr4_2738 protein of unknown function DUF162; hypothetical protein 3254820 4661242 Sputw3181_2838 Shewanella sp. W3-18-1 hypothetical protein YP_964209.1 3254251 D 351745 CDS YP_964210.1 120599636 4658588 3255385..3256563 1 NC_008750.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_2812 AAA ATPase, central domain protein; ATPase central domain-containing protein 3256563 4658588 Sputw3181_2839 Shewanella sp. W3-18-1 ATPase central domain-containing protein YP_964210.1 3255385 D 351745 CDS YP_964211.1 120599637 4658339 complement(3256994..3257275) 1 NC_008750.1 hypothetical protein 3257275 4658339 Sputw3181_2840 Shewanella sp. W3-18-1 hypothetical protein YP_964211.1 3256994 R 351745 CDS YP_964212.1 120599638 4657834 complement(3257335..3258051) 1 NC_008750.1 hypothetical protein 3258051 4657834 Sputw3181_2841 Shewanella sp. W3-18-1 hypothetical protein YP_964212.1 3257335 R 351745 CDS YP_964213.1 120599639 4657840 complement(3258163..3258621) 1 NC_008750.1 hypothetical protein 3258621 4657840 Sputw3181_2842 Shewanella sp. W3-18-1 hypothetical protein YP_964213.1 3258163 R 351745 CDS YP_964214.1 120599640 4657847 3259170..3259445 1 NC_008750.1 KEGG: she:Shewmr4_1443 hypothetical protein; hypothetical protein 3259445 4657847 Sputw3181_2843 Shewanella sp. W3-18-1 hypothetical protein YP_964214.1 3259170 D 351745 CDS YP_964215.1 120599641 4657856 complement(3259696..3261207) 1 NC_008750.1 KEGG: shm:Shewmr7_2824 hypothetical protein; hypothetical protein 3261207 4657856 Sputw3181_2844 Shewanella sp. W3-18-1 hypothetical protein YP_964215.1 3259696 R 351745 CDS YP_964216.1 120599642 4657858 complement(3261450..3262799) 1 NC_008750.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO1506 MATE efflux family protein; multi anti extrusion protein MatE 3262799 4657858 Sputw3181_2845 Shewanella sp. W3-18-1 multi anti extrusion protein MatE YP_964216.1 3261450 R 351745 CDS YP_964217.1 120599643 4657922 3263199..3264740 1 NC_008750.1 PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_2748 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3264740 4657922 Sputw3181_2846 Shewanella sp. W3-18-1 major facilitator superfamily transporter YP_964217.1 3263199 D 351745 CDS YP_964218.1 120599644 4658050 complement(3264819..3265340) 1 NC_008750.1 KEGG: son:SO1504 hypothetical protein; hypothetical protein 3265340 4658050 Sputw3181_2847 Shewanella sp. W3-18-1 hypothetical protein YP_964218.1 3264819 R 351745 CDS YP_964219.1 120599645 4658071 3265704..3266465 1 NC_008750.1 SMART: extracellular solute-binding protein, family 3; KEGG: son:SO1503 ABC transporter, periplasmic substrate-binding protein, putative; extracellular solute-binding protein 3266465 4658071 Sputw3181_2848 Shewanella sp. W3-18-1 extracellular solute-binding protein YP_964219.1 3265704 D 351745 CDS YP_964220.1 120599646 4658105 complement(3266479..3267561) 1 NC_008750.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: son:SO1502 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein, P47K 3267561 4658105 Sputw3181_2849 Shewanella sp. W3-18-1 cobalamin synthesis protein, P47K YP_964220.1 3266479 R 351745 CDS YP_964221.1 120599647 4658114 complement(3267676..3269121) 1 NC_008750.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO1501 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 3269121 4658114 Sputw3181_2850 Shewanella sp. W3-18-1 DEAD/DEAH box helicase YP_964221.1 3267676 R 351745 CDS YP_964222.1 120599648 4658134 complement(3269242..3272298) 1 NC_008750.1 KEGG: shm:Shewmr7_2831 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type, transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 3272298 4658134 Sputw3181_2851 Shewanella sp. W3-18-1 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_964222.1 3269242 R 351745 CDS YP_964223.1 120599649 4658139 complement(3272407..3274014) 1 NC_008750.1 PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: shm:Shewmr7_2832 starch synthase; starch synthase 3274014 4658139 Sputw3181_2852 Shewanella sp. W3-18-1 starch synthase YP_964223.1 3272407 R 351745 CDS YP_964224.1 120599650 4658171 complement(3274085..3275347) 1 NC_008750.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 3275347 glgC 4658171 glgC Shewanella sp. W3-18-1 glucose-1-phosphate adenylyltransferase YP_964224.1 3274085 R 351745 CDS YP_964225.1 120599651 4658177 complement(3275398..3277926) 1 NC_008750.1 KEGG: she:Shewmr4_2756 glycogen/starch/alpha-glucan phosphorylases; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase 3277926 4658177 Sputw3181_2854 Shewanella sp. W3-18-1 glycogen/starch/alpha-glucan phosphorylase YP_964225.1 3275398 R 351745 CDS YP_964226.1 120599652 4658182 complement(3277929..3280136) 1 NC_008750.1 KEGG: son:SO1495 glycogen operon protein; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX 3280136 4658182 Sputw3181_2855 Shewanella sp. W3-18-1 glycogen debranching protein GlgX YP_964226.1 3277929 R 351745 CDS YP_964227.1 120599653 4658183 complement(3280133..3282370) 1 NC_008750.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 3282370 4658183 Sputw3181_2856 Shewanella sp. W3-18-1 glycogen branching protein YP_964227.1 3280133 R 351745 CDS YP_964228.1 120599654 4658213 complement(3282435..3284672) 1 NC_008750.1 KEGG: shm:Shewmr7_2837 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; 4-alpha-glucanotransferase 3284672 4658213 Sputw3181_2857 Shewanella sp. W3-18-1 4-alpha-glucanotransferase YP_964228.1 3282435 R 351745 CDS YP_964229.1 120599655 4658219 3285185..3285817 1 NC_008750.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: shm:Shewmr7_2838 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3285817 4658219 Sputw3181_2858 Shewanella sp. W3-18-1 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_964229.1 3285185 D 351745 CDS YP_964230.1 120599656 4658221 complement(3285913..3286389) 1 NC_008750.1 PFAM: regulatory protein, MarR; KEGG: she:Shewmr4_2761 transcriptional regulator, MarR family; MarR family transcriptional regulator 3286389 4658221 Sputw3181_2859 Shewanella sp. W3-18-1 MarR family transcriptional regulator YP_964230.1 3285913 R 351745 CDS YP_964231.1 120599657 4658226 3286727..3287875 1 NC_008750.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO1490 alcohol dehydrogenase II; iron-containing alcohol dehydrogenase 3287875 4658226 Sputw3181_2860 Shewanella sp. W3-18-1 iron-containing alcohol dehydrogenase YP_964231.1 3286727 D 351745 CDS YP_964232.1 120599658 4658228 3288638..3289009 1 NC_008750.1 KEGG: shm:Shewmr7_2841 hypothetical protein; hypothetical protein 3289009 4658228 Sputw3181_2861 Shewanella sp. W3-18-1 hypothetical protein YP_964232.1 3288638 D 351745 CDS YP_964233.1 120599659 4658243 3289387..3290685 1 NC_008750.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_3431 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3290685 4658243 Sputw3181_2862 Shewanella sp. W3-18-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_964233.1 3289387 D 351745 CDS YP_964234.1 120599660 4658262 3290776..3290997 1 NC_008750.1 KEGG: son:SO1487 hypothetical protein; hypothetical protein 3290997 4658262 Sputw3181_2863 Shewanella sp. W3-18-1 hypothetical protein YP_964234.1 3290776 D 351745 CDS YP_964235.1 120599661 4658271 complement(3291065..3291433) 1 NC_008750.1 PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2843 thioesterase superfamily protein; thioesterase superfamily protein 3291433 4658271 Sputw3181_2864 Shewanella sp. W3-18-1 thioesterase superfamily protein YP_964235.1 3291065 R 351745 CDS YP_964236.1 120599662 4658278 complement(3291825..3293147) 1 NC_008750.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: son:SO1484 isocitrate lyase; isocitrate lyase 3293147 4658278 Sputw3181_2865 Shewanella sp. W3-18-1 isocitrate lyase YP_964236.1 3291825 R 351745 CDS YP_964237.1 120599663 4658285 complement(3293282..3295009) 1 NC_008750.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 3295009 4658285 Sputw3181_2866 Shewanella sp. W3-18-1 malate synthase YP_964237.1 3293282 R 351745 CDS YP_964238.1 120599664 4658283 3295792..3298236 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1482 TonB-dependent receptor, putative; TonB-dependent receptor, plug 3298236 4658283 Sputw3181_2867 Shewanella sp. W3-18-1 TonB-dependent receptor, plug YP_964238.1 3295792 D 351745 CDS YP_964239.1 120599665 4658288 complement(3298309..3300078) 1 NC_008750.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: shm:Shewmr7_2847 potassium efflux system protein; potassium efflux system protein 3300078 4658288 Sputw3181_2868 Shewanella sp. W3-18-1 potassium efflux system protein YP_964239.1 3298309 R 351745 CDS YP_964240.1 120599666 4658289 complement(3300242..3301852) 1 NC_008750.1 KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 3301852 4658289 Sputw3181_2869 Shewanella sp. W3-18-1 IS4 family transposase YP_964240.1 3300242 R 351745 CDS YP_964241.1 120599667 4658297 complement(3302105..3303838) 1 NC_008750.1 KEGG: she:Shewmr4_2770 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 3303838 4658297 Sputw3181_2870 Shewanella sp. W3-18-1 diguanylate cyclase YP_964241.1 3302105 R 351745 CDS YP_964242.1 120599668 4658299 complement(3303902..3304114) 1 NC_008750.1 KEGG: shm:Shewmr7_2849 hypothetical protein; hypothetical protein 3304114 4658299 Sputw3181_2871 Shewanella sp. W3-18-1 hypothetical protein YP_964242.1 3303902 R 351745 CDS YP_964243.1 120599669 4658307 complement(3304160..3304951) 1 NC_008750.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: she:Shewmr4_2772 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 3304951 4658307 Sputw3181_2872 Shewanella sp. W3-18-1 uroporphyrin-III C/tetrapyrrole methyltransferase YP_964243.1 3304160 R 351745 CDS YP_964244.1 120599670 4658311 3305538..3306062 1 NC_008750.1 PFAM: SmpA/OmlA domain protein; KEGG: shm:Shewmr7_2851 SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein 3306062 4658311 Sputw3181_2873 Shewanella sp. W3-18-1 SmpA/OmlA domain-containing protein YP_964244.1 3305538 D 351745 CDS YP_964245.1 120599671 4658312 complement(3306141..3306473) 1 NC_008750.1 PFAM: protein of unknown function UPF0125; KEGG: shm:Shewmr7_2852 protein of unknown function UPF0125; hypothetical protein 3306473 4658312 Sputw3181_2874 Shewanella sp. W3-18-1 hypothetical protein YP_964245.1 3306141 R 351745 CDS YP_964246.1 120599672 4658317 complement(3306463..3306900) 1 NC_008750.1 PFAM: cyclase/dehydrase; KEGG: shm:Shewmr7_2853 cyclase/dehydrase; cyclase/dehydrase 3306900 4658317 Sputw3181_2875 Shewanella sp. W3-18-1 cyclase/dehydrase YP_964246.1 3306463 R 351745 CDS YP_964247.1 120599673 4658332 3307175..3307666 1 NC_008750.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 3307666 smpB 4658332 smpB Shewanella sp. W3-18-1 SsrA-binding protein YP_964247.1 3307175 D 351745 CDS YP_964248.1 120599674 4659343 complement(3308838..3309233) 1 NC_008750.1 KEGG: noc:Noc_0165 hypothetical protein; hypothetical protein 3309233 4659343 Sputw3181_2877 Shewanella sp. W3-18-1 hypothetical protein YP_964248.1 3308838 R 351745 CDS YP_964249.1 120599675 4658406 complement(3309661..3310401) 1 NC_008750.1 KEGG: shm:Shewmr7_0743 hypothetical protein; hypothetical protein 3310401 4658406 Sputw3181_2878 Shewanella sp. W3-18-1 hypothetical protein YP_964249.1 3309661 R 351745 CDS YP_964250.1 120599676 4658405 complement(3310404..3311093) 1 NC_008750.1 KEGG: shm:Shewmr7_0742 hypothetical protein; hypothetical protein 3311093 4658405 Sputw3181_2879 Shewanella sp. W3-18-1 hypothetical protein YP_964250.1 3310404 R 351745 CDS YP_964251.1 120599677 4658691 complement(3311093..3311620) 1 NC_008750.1 KEGG: shm:Shewmr7_0741 hypothetical protein; hypothetical protein 3311620 4658691 Sputw3181_2880 Shewanella sp. W3-18-1 hypothetical protein YP_964251.1 3311093 R 351745 CDS YP_964252.1 120599678 4658425 complement(3311621..3314272) 1 NC_008750.1 KEGG: shm:Shewmr7_0740 hypothetical protein; hypothetical protein 3314272 4658425 Sputw3181_2881 Shewanella sp. W3-18-1 hypothetical protein YP_964252.1 3311621 R 351745 CDS YP_964253.1 120599679 4658711 complement(3314309..3314944) 1 NC_008750.1 KEGG: shm:Shewmr7_0739 hypothetical protein; hypothetical protein 3314944 4658711 Sputw3181_2882 Shewanella sp. W3-18-1 hypothetical protein YP_964253.1 3314309 R 351745 CDS YP_964254.1 120599680 4658717 complement(3314941..3316140) 1 NC_008750.1 KEGG: shm:Shewmr7_0738 putative bacteriophage protein; putative bacteriophage protein 3316140 4658717 Sputw3181_2883 Shewanella sp. W3-18-1 putative bacteriophage protein YP_964254.1 3314941 R 351745 CDS YP_964255.1 120599681 4658742 complement(3316140..3316472) 1 NC_008750.1 KEGG: shm:Shewmr7_0737 hypothetical protein; hypothetical protein 3316472 4658742 Sputw3181_2884 Shewanella sp. W3-18-1 hypothetical protein YP_964255.1 3316140 R 351745 CDS YP_964256.1 120599682 4658745 complement(3316469..3318217) 1 NC_008750.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: shm:Shewmr7_0736 phage tail tape measure protein, TP901 family; TP901 family phage tail tape measure protein 3318217 4658745 Sputw3181_2885 Shewanella sp. W3-18-1 TP901 family phage tail tape measure protein YP_964256.1 3316469 R 351745 CDS YP_964257.1 120599683 4657761 complement(3318420..3318683) 1 NC_008750.1 KEGG: shm:Shewmr7_0735 hypothetical protein; hypothetical protein 3318683 4657761 Sputw3181_2886 Shewanella sp. W3-18-1 hypothetical protein YP_964257.1 3318420 R 351745 CDS YP_964258.1 120599684 4658580 complement(3318680..3318943) 1 NC_008750.1 KEGG: shm:Shewmr7_0734 hypothetical protein; hypothetical protein 3318943 4658580 Sputw3181_2887 Shewanella sp. W3-18-1 hypothetical protein YP_964258.1 3318680 R 351745 CDS YP_964259.1 120599685 4658811 complement(3318947..3319555) 1 NC_008750.1 KEGG: shm:Shewmr7_0733 hypothetical protein; hypothetical protein 3319555 4658811 Sputw3181_2888 Shewanella sp. W3-18-1 hypothetical protein YP_964259.1 3318947 R 351745 CDS YP_964260.1 120599686 4658833 complement(3319567..3320115) 1 NC_008750.1 PFAM: protein of unknown function DUF847; KEGG: spt:SPA1608 hypothetical protein; hypothetical protein 3320115 4658833 Sputw3181_2889 Shewanella sp. W3-18-1 hypothetical protein YP_964260.1 3319567 R 351745 CDS YP_964261.1 120599687 4658849 complement(3320117..3320320) 1 NC_008750.1 PFAM: zinc finger, DksA/TraR C4-type; KEGG: shm:Shewmr7_0730 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 3320320 4658849 Sputw3181_2890 Shewanella sp. W3-18-1 TraR/DksA family transcriptional regulator YP_964261.1 3320117 R 351745 CDS YP_964262.1 120599688 4658875 complement(3320351..3320806) 1 NC_008750.1 KEGG: shm:Shewmr7_0729 prophage PSPPH06, putative tail tube protein; prophage PSPPH06 tail tube protein 3320806 4658875 Sputw3181_2891 Shewanella sp. W3-18-1 prophage PSPPH06 tail tube protein YP_964262.1 3320351 R 351745 CDS YP_964263.1 120599689 4658890 complement(3320819..3321925) 1 NC_008750.1 KEGG: shm:Shewmr7_0728 hypothetical protein; hypothetical protein 3321925 4658890 Sputw3181_2892 Shewanella sp. W3-18-1 hypothetical protein YP_964263.1 3320819 R 351745 CDS YP_964264.1 120599690 4658893 complement(3321928..3322590) 1 NC_008750.1 KEGG: hch:HCH_06771 hypothetical protein; hypothetical protein 3322590 4658893 Sputw3181_2893 Shewanella sp. W3-18-1 hypothetical protein YP_964264.1 3321928 R 351745 CDS YP_964265.1 120599691 4658896 complement(3322587..3323075) 1 NC_008750.1 KEGG: shm:Shewmr7_0726 hypothetical protein; hypothetical protein 3323075 4658896 Sputw3181_2894 Shewanella sp. W3-18-1 hypothetical protein YP_964265.1 3322587 R 351745 CDS YP_964266.1 120599692 4658899 complement(3323072..3323545) 1 NC_008750.1 KEGG: shm:Shewmr7_0725 hypothetical protein; hypothetical protein 3323545 4658899 Sputw3181_2895 Shewanella sp. W3-18-1 hypothetical protein YP_964266.1 3323072 R 351745 CDS YP_964267.1 120599693 4658900 complement(3323672..3324145) 1 NC_008750.1 KEGG: shm:Shewmr7_0724 putative phage gene; hypothetical protein 3324145 4658900 Sputw3181_2896 Shewanella sp. W3-18-1 hypothetical protein YP_964267.1 3323672 R 351745 CDS YP_964268.1 120599694 4658906 complement(3324364..3324966) 1 NC_008750.1 KEGG: shm:Shewmr7_0723 hypothetical protein; hypothetical protein 3324966 4658906 Sputw3181_2897 Shewanella sp. W3-18-1 hypothetical protein YP_964268.1 3324364 R 351745 CDS YP_964269.1 120599695 4658920 complement(3325044..3326087) 1 NC_008750.1 TIGRFAM: phage major capsid protein, P2 family; PFAM: phage major capsid protein, P2; KEGG: shm:Shewmr7_0722 phage major capsid protein, P2 family; P2 family phage major capsid protein 3326087 4658920 Sputw3181_2898 Shewanella sp. W3-18-1 P2 family phage major capsid protein YP_964269.1 3325044 R 351745 CDS YP_964270.1 120599696 4658938 complement(3326137..3327057) 1 NC_008750.1 PFAM: phage capsid scaffolding; KEGG: shm:Shewmr7_0721 phage capsid scaffolding; phage capsid scaffolding 3327057 4658938 Sputw3181_2899 Shewanella sp. W3-18-1 phage capsid scaffolding YP_964270.1 3326137 R 351745 CDS YP_964271.1 120599697 4658941 3327261..3329069 1 NC_008750.1 PFAM: protein of unknown function DUF264; putative terminase ATPase subunit; KEGG: shm:Shewmr7_0720 protein of unknown function DUF264; hypothetical protein 3329069 4658941 Sputw3181_2900 Shewanella sp. W3-18-1 hypothetical protein YP_964271.1 3327261 D 351745 CDS YP_964272.1 120599698 4659579 3329051..3330097 1 NC_008750.1 TIGRFAM: phage portal protein, PBSX family; PFAM: phage portal protein; KEGG: shm:Shewmr7_0719 phage portal protein, PBSX family; PBSX family phage portal protein 3330097 4659579 Sputw3181_2901 Shewanella sp. W3-18-1 PBSX family phage portal protein YP_964272.1 3329051 D 351745 CDS YP_964273.1 120599699 4659184 complement(3330135..3330491) 1 NC_008750.1 hypothetical protein 3330491 4659184 Sputw3181_2902 Shewanella sp. W3-18-1 hypothetical protein YP_964273.1 3330135 R 351745 CDS YP_964274.1 120599700 4659187 complement(3330502..3330756) 1 NC_008750.1 KEGG: eba:ebA2310 conserved hypothetical protein, predicted prevent-host-death family protein; prevent-host-death family protein 3330756 4659187 Sputw3181_2903 Shewanella sp. W3-18-1 prevent-host-death family protein YP_964274.1 3330502 R 351745 CDS YP_964275.1 120599701 4659214 3331010..3331258 1 NC_008750.1 PFAM: phage transcriptional activator, Ogr/delta; KEGG: shm:Shewmr7_0718 phage transcriptional activator, Ogr/delta; phage transcriptional activator, Ogr/delta 3331258 4659214 Sputw3181_2904 Shewanella sp. W3-18-1 phage transcriptional activator, Ogr/delta YP_964275.1 3331010 D 351745 CDS YP_964276.1 120599702 4659224 complement(3332204..3334441) 1 NC_008750.1 PFAM: bacteriophage replication gene A; KEGG: spt:SPA2623 putative phage gene; bacteriophage replication gene A 3334441 4659224 Sputw3181_2905 Shewanella sp. W3-18-1 bacteriophage replication gene A YP_964276.1 3332204 R 351745 CDS YP_964277.1 120599703 4659262 complement(3334445..3335071) 1 NC_008750.1 KEGG: mag:amb2057 site-specific DNA methylase; hypothetical protein 3335071 4659262 Sputw3181_2906 Shewanella sp. W3-18-1 hypothetical protein YP_964277.1 3334445 R 351745 CDS YP_964278.1 120599704 4659266 complement(3335068..3335361) 1 NC_008750.1 hypothetical protein 3335361 4659266 Sputw3181_2907 Shewanella sp. W3-18-1 hypothetical protein YP_964278.1 3335068 R 351745 CDS YP_964279.1 120599705 4659341 complement(3335336..3335575) 1 NC_008750.1 KEGG: shm:Shewmr7_0705 hypothetical protein; hypothetical protein 3335575 4659341 Sputw3181_2908 Shewanella sp. W3-18-1 hypothetical protein YP_964279.1 3335336 R 351745 CDS YP_964280.1 120599706 4659353 complement(3335819..3336385) 1 NC_008750.1 PFAM: phage regulatory CII family protein; KEGG: shm:Shewmr7_0702 phage regulatory CII family protein; phage regulatory CII family protein 3336385 4659353 Sputw3181_2909 Shewanella sp. W3-18-1 phage regulatory CII family protein YP_964280.1 3335819 R 351745 CDS YP_964281.1 120599707 4659388 complement(3336501..3336701) 1 NC_008750.1 KEGG: yps:YPTB1770 putative regulator for prophage CP-933T (Escherichia coli O157:H7); putative regulator for prophage CP-933T 3336701 4659388 Sputw3181_2910 Shewanella sp. W3-18-1 putative regulator for prophage CP-933T YP_964281.1 3336501 R 351745 CDS YP_964282.1 120599708 4659403 3336800..3337492 1 NC_008750.1 PFAM: bacteriophage CI repressor; KEGG: shm:Shewmr7_0700 bacteriophage CI repressor; bacteriophage CI repressor 3337492 4659403 Sputw3181_2911 Shewanella sp. W3-18-1 bacteriophage CI repressor YP_964282.1 3336800 D 351745 CDS YP_964283.1 120599709 4659412 3337504..3337929 1 NC_008750.1 KEGG: pat:Patl_0676 hypothetical protein; hypothetical protein 3337929 4659412 Sputw3181_2912 Shewanella sp. W3-18-1 hypothetical protein YP_964283.1 3337504 D 351745 CDS YP_964284.1 120599710 4659437 3338016..3338975 1 NC_008750.1 KEGG: mmp:MMP0423 hypothetical protein; hypothetical protein 3338975 4659437 Sputw3181_2913 Shewanella sp. W3-18-1 hypothetical protein YP_964284.1 3338016 D 351745 CDS YP_964285.1 120599711 4659457 3338996..3339601 1 NC_008750.1 hypothetical protein 3339601 4659457 Sputw3181_2914 Shewanella sp. W3-18-1 hypothetical protein YP_964285.1 3338996 D 351745 CDS YP_964286.1 120599712 4659466 3339611..3340228 1 NC_008750.1 hypothetical protein 3340228 4659466 Sputw3181_2915 Shewanella sp. W3-18-1 hypothetical protein YP_964286.1 3339611 D 351745 CDS YP_964287.1 120599713 4659479 3340238..3341257 1 NC_008750.1 PFAM: phage integrase family protein; KEGG: stm:STM2739 phage tail-like protein; phage integrase family protein 3341257 4659479 Sputw3181_2916 Shewanella sp. W3-18-1 phage integrase family protein YP_964287.1 3340238 D 351745 CDS YP_964288.1 120599714 4659484 3341262..3342695 1 NC_008750.1 PFAM: KAP P-loop domain protein; KEGG: she:Shewmr4_3681 kap P-loop domain protein; KAP P-loop domain-containing protein 3342695 4659484 Sputw3181_2917 Shewanella sp. W3-18-1 KAP P-loop domain-containing protein YP_964288.1 3341262 D 351745 CDS YP_964289.1 120599715 4659491 3342792..3343172 1 NC_008750.1 hypothetical protein 3343172 4659491 Sputw3181_2918 Shewanella sp. W3-18-1 hypothetical protein YP_964289.1 3342792 D 351745 CDS YP_964290.1 120599716 4659494 complement(3343211..3344065) 1 NC_008750.1 PFAM: UspA domain protein; KEGG: sfr:Sfri_0791 UspA domain protein; UspA domain-containing protein 3344065 4659494 Sputw3181_2919 Shewanella sp. W3-18-1 UspA domain-containing protein YP_964290.1 3343211 R 351745 CDS YP_964291.1 120599717 4659495 complement(3344099..3345589) 1 NC_008750.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sfr:Sfri_0790 sulphate transporter; sulfate transporter 3345589 4659495 Sputw3181_2920 Shewanella sp. W3-18-1 sulfate transporter YP_964291.1 3344099 R 351745 CDS YP_964292.1 120599718 4659505 complement(3346030..3346305) 1 NC_008750.1 KEGG: hch:HCH_00506 hypothetical protein; hypothetical protein 3346305 4659505 Sputw3181_2921 Shewanella sp. W3-18-1 hypothetical protein YP_964292.1 3346030 R 351745 CDS YP_964293.1 120599719 4659519 complement(3346437..3347675) 1 NC_008750.1 PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_4001 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3347675 4659519 Sputw3181_2922 Shewanella sp. W3-18-1 major facilitator superfamily transporter YP_964293.1 3346437 R 351745 CDS YP_964294.1 120599720 4659525 complement(3347681..3348691) 1 NC_008750.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 3348691 4659525 Sputw3181_2923 Shewanella sp. W3-18-1 glyceraldehyde-3-phosphate dehydrogenase YP_964294.1 3347681 R 351745 CDS YP_964295.1 120599721 4659532 complement(3348830..3349066) 1 NC_008750.1 KEGG: cps:CPS_3356 redox-active disulfide protein 2; redox-active disulfide protein 2 3349066 4659532 Sputw3181_2924 Shewanella sp. W3-18-1 redox-active disulfide protein 2 YP_964295.1 3348830 R 351745 CDS YP_964296.1 120599722 4659538 complement(3349078..3350076) 1 NC_008750.1 PFAM: permease; KEGG: sfr:Sfri_1725 permease; permease 3350076 4659538 Sputw3181_2925 Shewanella sp. W3-18-1 permease YP_964296.1 3349078 R 351745 CDS YP_964297.1 120599723 4659539 complement(3350168..3350515) 1 NC_008750.1 PFAM: regulatory protein, ArsR; KEGG: son:SO0532 arsenical resistence operon repressor; regulatory protein ArsR 3350515 4659539 Sputw3181_2926 Shewanella sp. W3-18-1 regulatory protein ArsR YP_964297.1 3350168 R 351745 CDS YP_964298.1 120599724 4659153 complement(3350508..3350924) 1 NC_008750.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sfr:Sfri_4004 transcriptional regulator, ArsR family protein; protein tyrosine phosphatase 3350924 4659153 Sputw3181_2927 Shewanella sp. W3-18-1 protein tyrosine phosphatase YP_964298.1 3350508 R 351745 CDS YP_964299.1 120599725 4660288 complement(3351022..3351339) 1 NC_008750.1 PFAM: regulatory protein, ArsR; KEGG: son:SO0502 transcriptional regulator, ArsR family; regulatory protein ArsR 3351339 4660288 Sputw3181_2928 Shewanella sp. W3-18-1 regulatory protein ArsR YP_964299.1 3351022 R 351745 CDS YP_964300.1 120599726 4660222 3351562..3352560 1 NC_008750.1 PFAM: permease; KEGG: son:SO0503 hypothetical protein; permease 3352560 4660222 Sputw3181_2929 Shewanella sp. W3-18-1 permease YP_964300.1 3351562 D 351745 CDS YP_964301.1 120599727 4659860 complement(3352843..3353604) 1 NC_008750.1 PFAM: peptidase S24, S26A and S26B; SMART: helix-turn-helix domain protein; KEGG: aeh:Mlg_1999 putative phage repressor; putative phage repressor 3353604 4659860 Sputw3181_2930 Shewanella sp. W3-18-1 putative phage repressor YP_964301.1 3352843 R 351745 CDS YP_964302.1 120599728 4659892 3353750..3354073 1 NC_008750.1 KEGG: sgl:SG0361 hypothetical protein; transcriptional regulator Nlp 3354073 4659892 Sputw3181_2931 Shewanella sp. W3-18-1 transcriptional regulator Nlp YP_964302.1 3353750 D 351745 CDS YP_964303.1 120599729 4659893 3354191..3354679 1 NC_008750.1 KEGG: cvi:CV2153 hypothetical protein; hypothetical protein 3354679 4659893 Sputw3181_2932 Shewanella sp. W3-18-1 hypothetical protein YP_964303.1 3354191 D 351745 CDS YP_964304.1 120599730 4659784 3354672..3356855 1 NC_008750.1 PFAM: Integrase, catalytic region; MuA-transposase/repressor protein CI, DNA-binding; KEGG: pol:Bpro_3752 integrase, catalytic region; integrase catalytic subunit 3356855 4659784 Sputw3181_2933 Shewanella sp. W3-18-1 integrase catalytic subunit YP_964304.1 3354672 D 351745 CDS YP_964305.1 120599731 4659920 3356900..3357619 1 NC_008750.1 KEGG: pol:Bpro_3753 prophage MuSo1, DNA transposition protein, putative; prophage MuSo1, DNA transposition protein 3357619 4659920 Sputw3181_2934 Shewanella sp. W3-18-1 prophage MuSo1, DNA transposition protein YP_964305.1 3356900 D 351745 CDS YP_964306.1 120599732 4659567 3357625..3357921 1 NC_008750.1 KEGG: son:SO0645 hypothetical protein; hypothetical protein 3357921 4659567 Sputw3181_2935 Shewanella sp. W3-18-1 hypothetical protein YP_964306.1 3357625 D 351745 CDS YP_964307.1 120599733 4659926 3357899..3358225 1 NC_008750.1 KEGG: mag:amb0449 hypothetical protein; hypothetical protein 3358225 4659926 Sputw3181_2936 Shewanella sp. W3-18-1 hypothetical protein YP_964307.1 3357899 D 351745 CDS YP_964308.1 120599734 4659932 3358500..3358712 1 NC_008750.1 KEGG: son:SO0647 hypothetical protein; hypothetical protein 3358712 4659932 Sputw3181_2937 Shewanella sp. W3-18-1 hypothetical protein YP_964308.1 3358500 D 351745 CDS YP_964309.1 120599735 4659935 3358717..3358959 1 NC_008750.1 hypothetical protein 3358959 4659935 Sputw3181_2938 Shewanella sp. W3-18-1 hypothetical protein YP_964309.1 3358717 D 351745 CDS YP_964310.1 120599736 4659937 3359146..3359580 1 NC_008750.1 KEGG: pat:Patl_1844 hypothetical protein; hypothetical protein 3359580 4659937 Sputw3181_2939 Shewanella sp. W3-18-1 hypothetical protein YP_964310.1 3359146 D 351745 CDS YP_964311.1 120599737 4659943 3359766..3360671 1 NC_008750.1 KEGG: ecs:ECs4974 putative major head subunit; putative major head subunit 3360671 4659943 Sputw3181_2940 Shewanella sp. W3-18-1 putative major head subunit YP_964311.1 3359766 D 351745 CDS YP_964312.1 120599738 4659964 3360685..3361074 1 NC_008750.1 KEGG: son:SO0652 prophage MuSo1, positive regulator of late transcription, putative; prophage MuSo1, positive regulator of late transcription 3361074 4659964 Sputw3181_2941 Shewanella sp. W3-18-1 prophage MuSo1, positive regulator of late transcription YP_964312.1 3360685 D 351745 CDS YP_964313.1 120599739 4659971 3361200..3361751 1 NC_008750.1 hypothetical protein 3361751 4659971 Sputw3181_2942 Shewanella sp. W3-18-1 hypothetical protein YP_964313.1 3361200 D 351745 CDS YP_964314.1 120599740 4659979 3361910..3364774 1 NC_008750.1 TIGRFAM: phage tape measure protein; KEGG: vvy:VV2164 phage-related minor tail protein; phage tape measure protein 3364774 4659979 Sputw3181_2943 Shewanella sp. W3-18-1 phage tape measure protein YP_964314.1 3361910 D 351745 CDS YP_964315.1 120599741 4660072 3365727..3367154 1 NC_008750.1 PFAM: glutathione synthase, ATP-binding; KEGG: vfi:VF0976 glutathione synthetase; glutathione synthase 3367154 4660072 Sputw3181_2944 Shewanella sp. W3-18-1 glutathione synthase YP_964315.1 3365727 D 351745 CDS YP_964316.1 120599742 4660084 complement(3367226..3367930) 1 NC_008750.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dsy:DSY4609 putative oxidoreductase iron-sulfur subunit; 4Fe-4S ferredoxin 3367930 4660084 Sputw3181_2945 Shewanella sp. W3-18-1 4Fe-4S ferredoxin YP_964316.1 3367226 R 351745 CDS YP_964317.1 120599743 4660087 complement(3367942..3370506) 1 NC_008750.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dsy:DSY4131 putative anaerobic dehydrogenase; molybdopterin oxidoreductase 3370506 4660087 Sputw3181_2946 Shewanella sp. W3-18-1 molybdopterin oxidoreductase YP_964317.1 3367942 R 351745 CDS YP_964318.1 120599744 4660090 3370879..3371241 1 NC_008750.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: dar:Daro_2638 arsenical resistance operon trans-acting repressor ArsD; arsenical resistance operon trans-acting repressor ArsD 3371241 4660090 Sputw3181_2947 Shewanella sp. W3-18-1 arsenical resistance operon trans-acting repressor ArsD YP_964318.1 3370879 D 351745 CDS YP_964319.1 120599745 4660102 3371276..3373048 1 NC_008750.1 KEGG: dar:Daro_2637 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase; arsenite-activated ATPase ArsA 3373048 4660102 Sputw3181_2948 Shewanella sp. W3-18-1 arsenite-activated ATPase ArsA YP_964319.1 3371276 D 351745 CDS YP_964320.1 120599746 4660149 3373101..3374384 1 NC_008750.1 TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: sbo:SBO_3500 arsenical pump membrane protein; arsenical pump membrane protein 3374384 4660149 Sputw3181_2949 Shewanella sp. W3-18-1 arsenical pump membrane protein YP_964320.1 3373101 D 351745 CDS YP_964321.1 120599747 4660164 3374464..3374919 1 NC_008750.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase; KEGG: sbo:SBO_3501 arsenate reductase; arsenate reductase 3374919 4660164 Sputw3181_2950 Shewanella sp. W3-18-1 arsenate reductase YP_964321.1 3374464 D 351745 CDS YP_964322.1 120599748 4660166 complement(3375003..3375707) 1 NC_008750.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: bth:BT0800 hypothetical protein; cytochrome c biogenesis protein, transmembrane region 3375707 4660166 Sputw3181_2951 Shewanella sp. W3-18-1 cytochrome c biogenesis protein, transmembrane region YP_964322.1 3375003 R 351745 CDS YP_964323.1 120599749 4660180 complement(3375700..3376188) 1 NC_008750.1 KEGG: mhu:Mhun_0869 hypothetical protein; hypothetical protein 3376188 4660180 Sputw3181_2952 Shewanella sp. W3-18-1 hypothetical protein YP_964323.1 3375700 R 351745 CDS YP_964324.1 120599750 4660183 complement(3376207..3376449) 1 NC_008750.1 TIGRFAM: redox-active disulfide protein 2; KEGG: plt:Plut_1705 redox-active disulfide protein 2; redox-active disulfide protein 2 3376449 4660183 Sputw3181_2953 Shewanella sp. W3-18-1 redox-active disulfide protein 2 YP_964324.1 3376207 R 351745 CDS YP_964325.1 120599751 4660259 complement(3376510..3376818) 1 NC_008750.1 PFAM: regulatory protein, ArsR; KEGG: dps:DP0944 similar to ArsR-family transcription regulator; regulatory protein ArsR 3376818 4660259 Sputw3181_2954 Shewanella sp. W3-18-1 regulatory protein ArsR YP_964325.1 3376510 R 351745 CDS YP_964326.1 120599752 4661035 3377053..3378327 1 NC_008750.1 PFAM: protein of unknown function DUF1063; KEGG: shm:Shewmr7_2876 protein of unknown function DUF1063; hypothetical protein 3378327 4661035 Sputw3181_2955 Shewanella sp. W3-18-1 hypothetical protein YP_964326.1 3377053 D 351745 CDS YP_964327.1 120599753 4660995 3378375..3379058 1 NC_008750.1 PFAM: YheO domain protein; KEGG: son:SO1402 hypothetical protein; YheO domain-containing protein 3379058 4660995 Sputw3181_2956 Shewanella sp. W3-18-1 YheO domain-containing protein YP_964327.1 3378375 D 351745 CDS YP_964328.1 120599754 4660951 complement(3379112..3380713) 1 NC_008750.1 KEGG: shm:Shewmr7_2878 hypothetical protein; hypothetical protein 3380713 4660951 Sputw3181_2957 Shewanella sp. W3-18-1 hypothetical protein YP_964328.1 3379112 R 351745 CDS YP_964329.1 120599755 4660923 complement(3380942..3381856) 1 NC_008750.1 PFAM: protein of unknown function DUF368; KEGG: shm:Shewmr7_2879 protein of unknown function DUF368; hypothetical protein 3381856 4660923 Sputw3181_2958 Shewanella sp. W3-18-1 hypothetical protein YP_964329.1 3380942 R 351745 CDS YP_964330.1 120599756 4660437 3382094..3382585 1 NC_008750.1 KEGG: shm:Shewmr7_2880 hypothetical protein; hypothetical protein 3382585 4660437 Sputw3181_2959 Shewanella sp. W3-18-1 hypothetical protein YP_964330.1 3382094 D 351745 CDS YP_964331.1 120599757 4660506 3382720..3383157 1 NC_008750.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: son:SO1397 cytosine deaminase; cytosine deaminase 3383157 4660506 Sputw3181_2960 Shewanella sp. W3-18-1 cytosine deaminase YP_964331.1 3382720 D 351745 CDS YP_964332.1 120599758 4660513 3383307..3384503 1 NC_008750.1 PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: son:SO1396 hypothetical protein; hypothetical protein 3384503 4660513 Sputw3181_2961 Shewanella sp. W3-18-1 hypothetical protein YP_964332.1 3383307 D 351745 CDS YP_964333.1 120599759 4660522 3384531..3384959 1 NC_008750.1 PFAM: protein of unknown function DUF1294; KEGG: son:SO1395 membrane protein,putative; hypothetical protein 3384959 4660522 Sputw3181_2962 Shewanella sp. W3-18-1 hypothetical protein YP_964333.1 3384531 D 351745 CDS YP_964334.1 120599760 4660525 complement(3385045..3386388) 1 NC_008750.1 PFAM: short chain fatty acid transporter; KEGG: shm:Shewmr7_2886 short chain fatty acid transporter; short chain fatty acid transporter 3386388 4660525 Sputw3181_2963 Shewanella sp. W3-18-1 short chain fatty acid transporter YP_964334.1 3385045 R 351745 CDS YP_964335.1 120599761 4660628 3386630..3387100 1 NC_008750.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1390 peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 3387100 4660628 Sputw3181_2964 Shewanella sp. W3-18-1 peptidylprolyl isomerase, FKBP-type YP_964335.1 3386630 D 351745 CDS YP_964336.1 120599762 4660631 complement(3387171..3387956) 1 NC_008750.1 PFAM: ROK family protein; KEGG: son:SO1389 ROK family protein; ROK family protein 3387956 4660631 Sputw3181_2965 Shewanella sp. W3-18-1 ROK family protein YP_964336.1 3387171 R 351745 CDS YP_964337.1 120599763 4660635 3388322..3390109 1 NC_008750.1 PFAM: peptidase M24; KEGG: shm:Shewmr7_2890 peptidase M24; peptidase M24 3390109 4660635 Sputw3181_2966 Shewanella sp. W3-18-1 peptidase M24 YP_964337.1 3388322 D 351745 CDS YP_964338.1 120599764 4660692 complement(3390250..3390444) 1 NC_008750.1 KEGG: son:SO1387 HD domain protein; hypothetical protein 3390444 4660692 Sputw3181_2967 Shewanella sp. W3-18-1 hypothetical protein YP_964338.1 3390250 R 351745 CDS YP_964339.1 120599765 4660693 3391008..3392576 1 NC_008750.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: shm:Shewmr7_2891 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer 3392576 4660693 Sputw3181_2968 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_964339.1 3391008 D 351745 CDS YP_964340.1 120599766 4660706 3392900..3394201 1 NC_008750.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO1383 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 3394201 4660706 Sputw3181_2969 Shewanella sp. W3-18-1 DEAD/DEAH box helicase YP_964340.1 3392900 D 351745 CDS YP_964341.1 120599767 4660722 complement(3394320..3395210) 1 NC_008750.1 KEGG: shm:Shewmr7_2893 hypothetical protein; hypothetical protein 3395210 4660722 Sputw3181_2970 Shewanella sp. W3-18-1 hypothetical protein YP_964341.1 3394320 R 351745 CDS YP_964342.1 120599768 4660754 3395425..3396060 1 NC_008750.1 KEGG: shm:Shewmr7_2895 hypothetical protein; hypothetical protein 3396060 4660754 Sputw3181_2971 Shewanella sp. W3-18-1 hypothetical protein YP_964342.1 3395425 D 351745 CDS YP_964343.1 120599769 4660777 complement(3396159..3396476) 1 NC_008750.1 KEGG: son:SO1379 hypothetical protein; hypothetical protein 3396476 4660777 Sputw3181_2972 Shewanella sp. W3-18-1 hypothetical protein YP_964343.1 3396159 R 351745 CDS YP_964344.1 120599770 4660779 complement(3396642..3397205) 1 NC_008750.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: son:SO1378 ThiJ/PfpI family protein; PfpI family intracellular peptidase 3397205 4660779 Sputw3181_2973 Shewanella sp. W3-18-1 PfpI family intracellular peptidase YP_964344.1 3396642 R 351745 CDS YP_964345.1 120599771 4660785 complement(3397382..3397903) 1 NC_008750.1 hypothetical protein 3397903 4660785 Sputw3181_2974 Shewanella sp. W3-18-1 hypothetical protein YP_964345.1 3397382 R 351745 CDS YP_964346.1 120599772 4660799 complement(3397922..3400045) 1 NC_008750.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: ecj:JW5272 predicted oxidoreductase; putative oxidoreductase 3400045 4660799 Sputw3181_2975 Shewanella sp. W3-18-1 putative oxidoreductase YP_964346.1 3397922 R 351745 CDS YP_964347.1 120599773 4660813 complement(3400062..3400706) 1 NC_008750.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sbo:SBO_1458 putative oxidoreductase, Fe-S subunit; 4Fe-4S ferredoxin 3400706 4660813 Sputw3181_2976 Shewanella sp. W3-18-1 4Fe-4S ferredoxin YP_964347.1 3400062 R 351745 CDS YP_964348.1 120599774 4660835 3401056..3403392 1 NC_008750.1 KEGG: shm:Shewmr7_2577 decaheme cytochrome c; hypothetical protein 3403392 4660835 Sputw3181_2977 Shewanella sp. W3-18-1 hypothetical protein YP_964348.1 3401056 D 351745 CDS YP_964349.1 120599775 4660841 complement(3403530..3405302) 1 NC_008750.1 PFAM: band 7 protein; KEGG: son:SO1377 hypothetical protein; hypothetical protein 3405302 4660841 Sputw3181_2978 Shewanella sp. W3-18-1 hypothetical protein YP_964349.1 3403530 R 351745 CDS YP_964350.1 120599776 4660852 complement(3405339..3405971) 1 NC_008750.1 PFAM: protein of unknown function DUF1449; KEGG: shm:Shewmr7_2900 protein of unknown function DUF1449; hypothetical protein 3405971 4660852 Sputw3181_2979 Shewanella sp. W3-18-1 hypothetical protein YP_964350.1 3405339 R 351745 CDS YP_964351.1 120599777 4660856 3406360..3406851 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1374 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3406851 4660856 Sputw3181_2980 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_964351.1 3406360 D 351745 CDS YP_964352.1 120599778 4660867 3406854..3407204 1 NC_008750.1 PFAM: protein of unknown function DUF486; KEGG: she:Shewmr4_2821 protein of unknown function DUF486; hypothetical protein 3407204 4660867 Sputw3181_2981 Shewanella sp. W3-18-1 hypothetical protein YP_964352.1 3406854 D 351745 CDS YP_964353.1 120599779 4660868 3407223..3407480 1 NC_008750.1 KEGG: shm:Shewmr7_2905 hypothetical protein; hypothetical protein 3407480 4660868 Sputw3181_2982 Shewanella sp. W3-18-1 hypothetical protein YP_964353.1 3407223 D 351745 CDS YP_964354.1 120599780 4660876 3407527..3408036 1 NC_008750.1 PFAM: RDD domain containing protein; KEGG: she:Shewmr4_2823 RDD domain containing protein; RDD domain-containing protein 3408036 4660876 Sputw3181_2983 Shewanella sp. W3-18-1 RDD domain-containing protein YP_964354.1 3407527 D 351745 CDS YP_964355.1 120599781 4660888 complement(3408112..3409170) 1 NC_008750.1 PFAM: permease YjgP/YjgQ family protein; KEGG: shm:Shewmr7_2907 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 3409170 4660888 Sputw3181_2984 Shewanella sp. W3-18-1 YjgP/YjgQ family permease YP_964355.1 3408112 R 351745 CDS YP_964356.1 120599782 4660993 complement(3409167..3410279) 1 NC_008750.1 PFAM: permease YjgP/YjgQ family protein; KEGG: she:Shewmr4_2826 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 3410279 4660993 Sputw3181_2985 Shewanella sp. W3-18-1 YjgP/YjgQ family permease YP_964356.1 3409167 R 351745 CDS YP_964357.1 120599783 4660969 3410536..3412044 1 NC_008750.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 3412044 4660969 Sputw3181_2986 Shewanella sp. W3-18-1 leucyl aminopeptidase YP_964357.1 3410536 D 351745 CDS YP_964358.1 120599784 4660894 3412394..3414373 1 NC_008750.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: she:Shewmr4_2828 chorismate mutase; chorismate mutase 3414373 4660894 Sputw3181_2987 Shewanella sp. W3-18-1 chorismate mutase YP_964358.1 3412394 D 351745 CDS YP_964359.1 120599785 4660912 complement(3414502..3414837) 1 NC_008750.1 KEGG: she:Shewmr4_2830 hypothetical protein; hypothetical protein 3414837 4660912 Sputw3181_2988 Shewanella sp. W3-18-1 hypothetical protein YP_964359.1 3414502 R 351745 CDS YP_964360.1 120599786 4661552 complement(3414979..3416094) 1 NC_008750.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: shm:Shewmr7_2913 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 3416094 4661552 Sputw3181_2989 Shewanella sp. W3-18-1 oxidoreductase FAD-binding subunit YP_964360.1 3414979 R 351745 CDS YP_964361.1 120599787 4661202 complement(3416171..3417835) 1 NC_008750.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 3417835 4661202 Sputw3181_2990 Shewanella sp. W3-18-1 hydroxylamine reductase YP_964361.1 3416171 R 351745 CDS YP_964362.1 120599788 4661057 complement(3418053..3419204) 1 NC_008750.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 3419204 tyrA 4661057 tyrA Shewanella sp. W3-18-1 bifunctional chorismate mutase/prephenate dehydrogenase YP_964362.1 3418053 R 351745 CDS YP_964363.1 120599789 4661044 complement(3419220..3420311) 1 NC_008750.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3420311 4661044 Sputw3181_2992 Shewanella sp. W3-18-1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_964363.1 3419220 R 351745 CDS YP_964364.1 120599790 4661779 complement(3420564..3420917) 1 NC_008750.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 3420917 rplS 4661779 rplS Shewanella sp. W3-18-1 50S ribosomal protein L19 YP_964364.1 3420564 R 351745 CDS YP_964365.1 120599791 4661762 complement(3420952..3421698) 1 NC_008750.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 3421698 trmD 4661762 trmD Shewanella sp. W3-18-1 tRNA (guanine-N(1)-)-methyltransferase YP_964365.1 3420952 R 351745 CDS YP_964366.1 120599792 4661734 complement(3421714..3422244) 1 NC_008750.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 3422244 rimM 4661734 rimM Shewanella sp. W3-18-1 16S rRNA-processing protein RimM YP_964366.1 3421714 R 351745 CDS YP_964367.1 120599793 4661706 complement(3422265..3422516) 1 NC_008750.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 3422516 rpsP 4661706 rpsP Shewanella sp. W3-18-1 30S ribosomal protein S16 YP_964367.1 3422265 R 351745 CDS YP_964368.1 120599794 4661615 complement(3422735..3424108) 1 NC_008750.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 3424108 4661615 Sputw3181_2997 Shewanella sp. W3-18-1 signal recognition particle protein YP_964368.1 3422735 R 351745 CDS YP_964369.1 120599795 4661551 3424437..3425225 1 NC_008750.1 PFAM: cytochrome c assembly protein; KEGG: shm:Shewmr7_2922 cytochrome c assembly protein; cytochrome c assembly protein 3425225 4661551 Sputw3181_2998 Shewanella sp. W3-18-1 cytochrome c assembly protein YP_964369.1 3424437 D 351745 CDS YP_964370.1 120599796 4661497 3425326..3426597 1 NC_008750.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: she:Shewmr4_2841 protein of unknown function DUF21; hypothetical protein 3426597 4661497 Sputw3181_2999 Shewanella sp. W3-18-1 hypothetical protein YP_964370.1 3425326 D 351745 CDS YP_964371.1 120599797 4661471 complement(3426662..3427186) 1 NC_008750.1 PFAM: protein of unknown function DUF962; KEGG: shm:Shewmr7_2925 protein of unknown function DUF962; hypothetical protein 3427186 4661471 Sputw3181_3000 Shewanella sp. W3-18-1 hypothetical protein YP_964371.1 3426662 R 351745 CDS YP_964372.1 120599798 4661414 complement(3427374..3427757) 1 NC_008750.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 3427757 acpS 4661414 acpS Shewanella sp. W3-18-1 4'-phosphopantetheinyl transferase YP_964372.1 3427374 R 351745 CDS YP_964373.1 120599799 4661399 complement(3427757..3428494) 1 NC_008750.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 3428494 4661399 Sputw3181_3002 Shewanella sp. W3-18-1 pyridoxine 5'-phosphate synthase YP_964373.1 3427757 R 351745 CDS YP_964374.1 120599800 4661363 complement(3428586..3429296) 1 NC_008750.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: son:SO1350 DNA repair protein RecO; DNA repair protein RecO 3429296 4661363 Sputw3181_3003 Shewanella sp. W3-18-1 DNA repair protein RecO YP_964374.1 3428586 R 351745 CDS YP_964375.1 120599801 4661384 complement(3429324..3430340) 1 NC_008750.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 3430340 era 4661384 era Shewanella sp. W3-18-1 GTP-binding protein Era YP_964375.1 3429324 R 351745 CDS YP_964376.1 120599802 4661229 complement(3430337..3431017) 1 NC_008750.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 3431017 rnc 4661229 rnc Shewanella sp. W3-18-1 ribonuclease III YP_964376.1 3430337 R 351745 CDS YP_964377.1 120599803 4661310 complement(3431019..3431936) 1 NC_008750.1 KEGG: shm:Shewmr7_2931 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 3431936 4661310 Sputw3181_3006 Shewanella sp. W3-18-1 signal peptidase I YP_964377.1 3431019 R 351745 CDS YP_964378.1 120599804 4661243 complement(3432109..3433899) 1 NC_008750.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 3433899 4661243 Sputw3181_3007 Shewanella sp. W3-18-1 GTP-binding protein LepA YP_964378.1 3432109 R 351745 CDS YP_964379.1 120599805 4661197 complement(3434066..3434539) 1 NC_008750.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: she:Shewmr4_2851 positive regulator of sigma E, RseC/MucC; sigma E positive regulator RseC/MucC 3434539 4661197 Sputw3181_3008 Shewanella sp. W3-18-1 sigma E positive regulator RseC/MucC YP_964379.1 3434066 R 351745 CDS YP_964380.1 120599806 4660764 complement(3434550..3435482) 1 NC_008750.1 PFAM: MucB/RseB family protein; KEGG: son:SO1344 sigma-E factor regulatory protein RseB; sigma E regulatory protein MucB/RseB 3435482 4660764 Sputw3181_3009 Shewanella sp. W3-18-1 sigma E regulatory protein MucB/RseB YP_964380.1 3434550 R 351745 CDS YP_964381.1 120599807 4660745 complement(3435495..3436115) 1 NC_008750.1 PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: she:Shewmr4_2853 anti sigma-E protein, RseA; anti sigma-E protein, RseA 3436115 4660745 Sputw3181_3010 Shewanella sp. W3-18-1 anti sigma-E protein, RseA YP_964381.1 3435495 R 351745 CDS YP_964382.1 120599808 4660407 complement(3436142..3436720) 1 NC_008750.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 3436720 4660407 Sputw3181_3011 Shewanella sp. W3-18-1 RNA polymerase sigma factor RpoE YP_964382.1 3436142 R 351745 CDS YP_964383.1 120599809 4660713 3436910..3438523 1 NC_008750.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 3438523 4660713 Sputw3181_3012 Shewanella sp. W3-18-1 L-aspartate oxidase YP_964383.1 3436910 D 351745 CDS YP_964384.1 120599810 4660399 complement(3438560..3438931) 1 NC_008750.1 KEGG: son:SO1340 hypothetical protein; hypothetical protein 3438931 4660399 Sputw3181_3013 Shewanella sp. W3-18-1 hypothetical protein YP_964384.1 3438560 R 351745 CDS YP_964385.1 120599811 4660395 complement(3438981..3439220) 1 NC_008750.1 PFAM: protein of unknown function DUF339; KEGG: shm:Shewmr7_2939 protein of unknown function DUF339; hypothetical protein 3439220 4660395 Sputw3181_3014 Shewanella sp. W3-18-1 hypothetical protein YP_964385.1 3438981 R 351745 CDS YP_964386.1 120599812 4660664 complement(3439315..3440223) 1 NC_008750.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 3440223 nhaR 4660664 nhaR Shewanella sp. W3-18-1 transcriptional activator NhaR YP_964386.1 3439315 R 351745 CDS YP_964387.1 120599813 4660621 complement(3440331..3440717) 1 NC_008750.1 KEGG: son:SO1337 hypothetical protein; hypothetical protein 3440717 4660621 Sputw3181_3016 Shewanella sp. W3-18-1 hypothetical protein YP_964387.1 3440331 R 351745 CDS YP_964388.1 120599814 4660379 complement(3440720..3441889) 1 NC_008750.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 3441889 nhaA 4660379 nhaA Shewanella sp. W3-18-1 pH-dependent sodium/proton antiporter YP_964388.1 3440720 R 351745 CDS YP_964389.1 120599815 4660368 complement(3442006..3442800) 1 NC_008750.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 3442800 thyA 4660368 thyA Shewanella sp. W3-18-1 thymidylate synthase YP_964389.1 3442006 R 351745 CDS YP_964390.1 120599816 4660571 complement(3442800..3443606) 1 NC_008750.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3443606 4660571 Sputw3181_3019 Shewanella sp. W3-18-1 prolipoprotein diacylglyceryl transferase YP_964390.1 3442800 R 351745 CDS YP_964391.1 120599817 4660320 complement(3443646..3444446) 1 NC_008750.1 PFAM: protein of unknown function DUF81; KEGG: son:SO1333 hypothetical protein; hypothetical protein 3444446 4660320 Sputw3181_3020 Shewanella sp. W3-18-1 hypothetical protein YP_964391.1 3443646 R 351745 CDS YP_964392.1 120599818 4660325 complement(3444505..3446739) 1 NC_008750.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: she:Shewmr4_2864 PTSINtr with GAF domain, PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP 3446739 4660325 Sputw3181_3021 Shewanella sp. W3-18-1 phosphoenolpyruvate-protein phosphotransferase PtsP YP_964392.1 3444505 R 351745 CDS YP_964393.1 120599819 4660315 complement(3446762..3447286) 1 NC_008750.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 3447286 4660315 Sputw3181_3022 Shewanella sp. W3-18-1 dinucleoside polyphosphate hydrolase YP_964393.1 3446762 R 351745 CDS YP_964394.1 120599820 4660227 3447974..3448645 1 NC_008750.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3448645 4660227 Sputw3181_3023 Shewanella sp. W3-18-1 DNA mismatch repair protein YP_964394.1 3447974 D 351745 CDS YP_964395.1 120599821 4660246 3448768..3449835 1 NC_008750.1 KEGG: shm:Shewmr7_2949 putative adenylate/guanylate cyclase; putative adenylate/guanylate cyclase 3449835 4660246 Sputw3181_3024 Shewanella sp. W3-18-1 putative adenylate/guanylate cyclase YP_964395.1 3448768 D 351745 CDS YP_964396.1 120599822 4660255 complement(3449890..3450801) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2950 transcriptional regulator, LysR family; LysR family transcriptional regulator 3450801 4660255 Sputw3181_3025 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_964396.1 3449890 R 351745 CDS YP_964397.1 120599823 4660451 complement(3451167..3451532) 1 NC_008750.1 PFAM: Hpt domain protein; KEGG: shm:Shewmr7_2951 Hpt protein; Hpt protein 3451532 4660451 Sputw3181_3026 Shewanella sp. W3-18-1 Hpt protein YP_964397.1 3451167 R 351745 CDS YP_964398.1 120599824 4660296 complement(3451723..3452652) 1 NC_008750.1 KEGG: shm:Shewmr7_2952 conserved hypothetical radical SAM protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; putative radical SAM protein 3452652 4660296 Sputw3181_3027 Shewanella sp. W3-18-1 putative radical SAM protein YP_964398.1 3451723 R 351745 CDS YP_964399.1 120599825 4660066 3453237..3457685 1 NC_008750.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3457685 gltB 4660066 gltB Shewanella sp. W3-18-1 glutamate synthase subunit alpha YP_964399.1 3453237 D 351745 CDS YP_964400.1 120599826 4660055 3457692..3459098 1 NC_008750.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3459098 gltD 4660055 gltD Shewanella sp. W3-18-1 glutamate synthase subunit beta YP_964400.1 3457692 D 351745 CDS YP_964401.1 120599827 4660039 3459430..3460125 1 NC_008750.1 PFAM: purine and other phosphorylases, family 1; KEGG: she:Shewmr4_2874 methylthioadenosine nucleosidase; adenosylhomocysteine nucleosidase 3460125 4660039 Sputw3181_3030 Shewanella sp. W3-18-1 adenosylhomocysteine nucleosidase YP_964401.1 3459430 D 351745 CDS YP_964402.1 120599828 4660016 3460163..3461152 1 NC_008750.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: son:SO1321 CobD-related protein; cobalamin biosynthesis protein CbiB 3461152 4660016 Sputw3181_3031 Shewanella sp. W3-18-1 cobalamin biosynthesis protein CbiB YP_964402.1 3460163 D 351745 CDS YP_964403.1 120599829 4659822 3461208..3461585 1 NC_008750.1 KEGG: shm:Shewmr7_2958 hypothetical protein; hypothetical protein 3461585 4659822 Sputw3181_3032 Shewanella sp. W3-18-1 hypothetical protein YP_964403.1 3461208 D 351745 CDS YP_964404.1 120599830 4659794 3461582..3462208 1 NC_008750.1 PFAM: protein of unknown function UPF0126; KEGG: shm:Shewmr7_2959 protein of unknown function UPF0126; hypothetical protein 3462208 4659794 Sputw3181_3033 Shewanella sp. W3-18-1 hypothetical protein YP_964404.1 3461582 D 351745 CDS YP_964405.1 120599831 4659939 3462240..3462701 1 NC_008750.1 KEGG: she:Shewmr4_2878 hypothetical protein; hypothetical protein 3462701 4659939 Sputw3181_3034 Shewanella sp. W3-18-1 hypothetical protein YP_964405.1 3462240 D 351745 CDS YP_964406.1 120599832 4659589 3462822..3463250 1 NC_008750.1 KEGG: son:SO1317 hypothetical protein; hypothetical protein 3463250 4659589 Sputw3181_3035 Shewanella sp. W3-18-1 hypothetical protein YP_964406.1 3462822 D 351745 CDS YP_964407.1 120599833 4659631 complement(3463373..3464566) 1 NC_008750.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 3464566 4659631 Sputw3181_3036 Shewanella sp. W3-18-1 tyrosyl-tRNA synthetase YP_964407.1 3463373 R 351745 CDS YP_964408.1 120599834 4659633 3464693..3466099 1 NC_008750.1 PFAM: peptidase M23B; Opacity-associated protein A, N-terminal domain protein; KEGG: she:Shewmr4_2881 peptidase M23B; peptidase M23B 3466099 4659633 Sputw3181_3037 Shewanella sp. W3-18-1 peptidase M23B YP_964408.1 3464693 D 351745 CDS YP_964409.1 120599835 4659643 3466121..3467230 1 NC_008750.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 3467230 anmK 4659643 anmK Shewanella sp. W3-18-1 anhydro-N-acetylmuramic acid kinase YP_964409.1 3466121 D 351745 CDS YP_964410.1 120599836 4659759 3467484..3467864 1 NC_008750.1 KEGG: shm:Shewmr7_2969 hypothetical protein; hypothetical protein 3467864 4659759 Sputw3181_3039 Shewanella sp. W3-18-1 hypothetical protein YP_964410.1 3467484 D 351745 CDS YP_964411.1 120599837 4659770 3467893..3468336 1 NC_008750.1 KEGG: she:Shewmr4_2888 hypothetical protein; hypothetical protein 3468336 4659770 Sputw3181_3040 Shewanella sp. W3-18-1 hypothetical protein YP_964411.1 3467893 D 351745 CDS YP_964412.1 120599838 4659862 complement(3468435..3468785) 1 NC_008750.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 3468785 4659862 Sputw3181_3041 Shewanella sp. W3-18-1 iron-sulfur cluster insertion protein ErpA YP_964412.1 3468435 R 351745 CDS YP_964413.1 120599839 4659806 complement(3468778..3469584) 1 NC_008750.1 KEGG: she:Shewmr4_2890 hypothetical protein; hypothetical protein 3469584 4659806 Sputw3181_3042 Shewanella sp. W3-18-1 hypothetical protein YP_964413.1 3468778 R 351745 CDS YP_964414.1 120599840 4661132 3469657..3471381 1 NC_008750.1 PFAM: Cl- channel, voltage-gated family protein; KEGG: shm:Shewmr7_2973 Cl-channel, voltage-gated family protein; Cl- channel voltage-gated family protein 3471381 4661132 Sputw3181_3043 Shewanella sp. W3-18-1 Cl- channel voltage-gated family protein YP_964414.1 3469657 D 351745 CDS YP_964415.1 120599841 4659399 3471605..3472624 1 NC_008750.1 Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase 3472624 4659399 Sputw3181_3044 Shewanella sp. W3-18-1 aspartate carbamoyltransferase YP_964415.1 3471605 D 351745 CDS YP_964416.1 120599842 4659361 3472651..3473943 1 NC_008750.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3473943 4659361 Sputw3181_3045 Shewanella sp. W3-18-1 glutamate-1-semialdehyde aminotransferase YP_964416.1 3472651 D 351745 CDS YP_964417.1 120599843 4659116 3474357..3475604 1 NC_008750.1 PFAM: Citrate transporter; KEGG: she:Shewmr4_2894 citrate transporter; citrate transporter 3475604 4659116 Sputw3181_3046 Shewanella sp. W3-18-1 citrate transporter YP_964417.1 3474357 D 351745 CDS YP_964418.1 120599844 4659300 complement(3475665..3476732) 1 NC_008750.1 KEGG: she:Shewmr4_2895 general secretion pathway protein B; general secretion pathway protein B 3476732 4659300 Sputw3181_3047 Shewanella sp. W3-18-1 general secretion pathway protein B YP_964418.1 3475665 R 351745 CDS YP_964419.1 120599845 4659097 complement(3476732..3478411) 1 NC_008750.1 PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: she:Shewmr4_2896 peptidoglycan-binding domain 1 protein; peptidoglycan binding domain-containing protein 3478411 4659097 Sputw3181_3048 Shewanella sp. W3-18-1 peptidoglycan binding domain-containing protein YP_964419.1 3476732 R 351745 CDS YP_964420.1 120599846 4659259 3478566..3479828 1 NC_008750.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: shm:Shewmr7_2979 metal dependent phosphohydrolase; metal dependent phosphohydrolase 3479828 4659259 Sputw3181_3049 Shewanella sp. W3-18-1 metal dependent phosphohydrolase YP_964420.1 3478566 D 351745 CDS YP_964421.1 120599847 4659060 3480075..3480341 1 NC_008750.1 KEGG: shm:Shewmr7_2980 major outer membrane lipoprotein, putative; major outer membrane lipoprotein 3480341 4659060 Sputw3181_3050 Shewanella sp. W3-18-1 major outer membrane lipoprotein YP_964421.1 3480075 D 351745 CDS YP_964422.1 120599848 4658600 complement(3480547..3481404) 1 NC_008750.1 KEGG: son:SO1294 ribosomal RNA large subunit methyltransferase A, putative; ribosomal RNA large subunit methyltransferase A 3481404 4658600 Sputw3181_3051 Shewanella sp. W3-18-1 ribosomal RNA large subunit methyltransferase A YP_964422.1 3480547 R 351745 CDS YP_964423.1 120599849 4659001 complement(3481489..3482289) 1 NC_008750.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 3482289 4659001 Sputw3181_3052 Shewanella sp. W3-18-1 undecaprenyl pyrophosphate phosphatase YP_964423.1 3481489 R 351745 CDS YP_964424.1 120599850 4659177 complement(3482308..3482811) 1 NC_008750.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: she:Shewmr4_2901 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3482811 4659177 Sputw3181_3053 Shewanella sp. W3-18-1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_964424.1 3482308 R 351745 CDS YP_964425.1 120599851 4659176 complement(3482896..3483246) 1 NC_008750.1 TIGRFAM: dihydroneopterin aldolase; KEGG: shm:Shewmr7_2984 dihydroneopterin aldolase; dihydroneopterin aldolase 3483246 4659176 Sputw3181_3054 Shewanella sp. W3-18-1 dihydroneopterin aldolase YP_964425.1 3482896 R 351745 CDS YP_964426.1 120599852 4659173 3483515..3484126 1 NC_008750.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 3484126 4659173 Sputw3181_3055 Shewanella sp. W3-18-1 putative glycerol-3-phosphate acyltransferase PlsY YP_964426.1 3483515 D 351745 CDS YP_964427.1 120599853 4659053 complement(3484205..3485221) 1 NC_008750.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 3485221 4659053 Sputw3181_3056 Shewanella sp. W3-18-1 putative DNA-binding/iron metalloprotein/AP endonuclease YP_964427.1 3484205 R 351745 CDS YP_964428.1 120599854 4659161 3485440..3485655 1 NC_008750.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3485655 rpsU 4659161 rpsU Shewanella sp. W3-18-1 30S ribosomal protein S21 YP_964428.1 3485440 D 351745 CDS YP_964429.1 120599855 4661264 3485662..3486105 1 NC_008750.1 PFAM: GatB/Yqey domain protein; KEGG: she:Shewmr4_2906 GatB/YqeY domain protein; GatB/Yqey domain-containing protein 3486105 4661264 Sputw3181_3058 Shewanella sp. W3-18-1 GatB/Yqey domain-containing protein YP_964429.1 3485662 D 351745 CDS YP_964430.1 120599856 4658855 3486189..3487913 1 NC_008750.1 KEGG: shm:Shewmr7_2989 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase DnaG, DnaB-binding; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase 3487913 4658855 Sputw3181_3059 Shewanella sp. W3-18-1 DNA primase YP_964430.1 3486189 D 351745 CDS YP_964431.1 120599857 4658817 3488044..3489894 1 NC_008750.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: she:Shewmr4_2908 RNA polymerase, sigma 70 subunit, RpoD; RpoD family RNA polymerase sigma factor 3489894 4658817 Sputw3181_3060 Shewanella sp. W3-18-1 RpoD family RNA polymerase sigma factor YP_964431.1 3488044 D 351745 CDS YP_964432.1 120599858 4661812 complement(3490395..3492515) 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_2991 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3492515 4661812 Sputw3181_3061 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_964432.1 3490395 R 351745 CDS YP_964433.1 120599859 4658764 3492775..3494415 1 NC_008750.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_2992 amino acid/peptide transporter; amino acid/peptide transporter 3494415 4658764 Sputw3181_3062 Shewanella sp. W3-18-1 amino acid/peptide transporter YP_964433.1 3492775 D 351745 CDS YP_964434.1 120599860 4658552 3494938..3495945 1 NC_008750.1 PFAM: luciferase family protein; KEGG: she:Shewmr4_2911 luciferase family protein; luciferase family protein 3495945 4658552 Sputw3181_3063 Shewanella sp. W3-18-1 luciferase family protein YP_964434.1 3494938 D 351745 CDS YP_964435.1 120599861 4660896 complement(3496092..3497369) 1 NC_008750.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 3497369 4660896 Sputw3181_3064 Shewanella sp. W3-18-1 4-aminobutyrate aminotransferase YP_964435.1 3496092 R 351745 CDS YP_964436.1 120599862 4658709 complement(3497402..3498850) 1 NC_008750.1 KEGG: son:SO1275 succinate-semialdehyde dehydrogenase (NADP+); TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate-semialdehyde dehydrogenase 3498850 4658709 Sputw3181_3065 Shewanella sp. W3-18-1 succinate-semialdehyde dehydrogenase YP_964436.1 3497402 R 351745 CDS YP_964437.1 120599863 4658369 complement(3498901..3500187) 1 NC_008750.1 PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_2996 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3500187 4658369 Sputw3181_3066 Shewanella sp. W3-18-1 FAD dependent oxidoreductase YP_964437.1 3498901 R 351745 CDS YP_964438.1 120599864 4658451 complement(3500445..3501260) 1 NC_008750.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2997 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3501260 4658451 Sputw3181_3067 Shewanella sp. W3-18-1 binding-protein-dependent transport system inner membrane protein YP_964438.1 3500445 R 351745 CDS YP_964439.1 120599865 4658474 complement(3501257..3502162) 1 NC_008750.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2998 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3502162 4658474 Sputw3181_3068 Shewanella sp. W3-18-1 binding-protein-dependent transport system inner membrane protein YP_964439.1 3501257 R 351745 CDS YP_964440.1 120599866 4661335 complement(3502159..3503295) 1 NC_008750.1 KEGG: shm:Shewmr7_2999 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 3503295 4661335 Sputw3181_3069 Shewanella sp. W3-18-1 spermidine/putrescine ABC transporter ATPase YP_964440.1 3502159 R 351745 CDS YP_964441.1 120599867 4658659 complement(3503471..3504571) 1 NC_008750.1 PFAM: extracellular solute-binding protein, family 1; KEGG: she:Shewmr4_2918 extracellular solute-binding protein, family 1; extracellular solute-binding protein 3504571 4658659 Sputw3181_3070 Shewanella sp. W3-18-1 extracellular solute-binding protein YP_964441.1 3503471 R 351745 CDS YP_964442.1 120599868 4658586 complement(3505192..3506547) 1 NC_008750.1 PFAM: glutamine synthetase, catalytic region; KEGG: she:Shewmr4_2919 glutamate--ammonia ligase; glutamate--ammonia ligase 3506547 4658586 Sputw3181_3071 Shewanella sp. W3-18-1 glutamate--ammonia ligase YP_964442.1 3505192 R 351745 CDS YP_964443.1 120599869 4658200 complement(3506550..3507311) 1 NC_008750.1 PFAM: peptidase C26; KEGG: she:Shewmr4_2920 peptidase C26; peptidase C26 3507311 4658200 Sputw3181_3072 Shewanella sp. W3-18-1 peptidase C26 YP_964443.1 3506550 R 351745 CDS YP_964444.1 120599870 4658164 complement(3507719..3508267) 1 NC_008750.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: son:SO1265 transcriptional regulator, putative; XRE family transcriptional regulator 3508267 4658164 Sputw3181_3073 Shewanella sp. W3-18-1 XRE family transcriptional regulator YP_964444.1 3507719 R 351745 CDS YP_964445.1 120599871 4657730 3508504..3509811 1 NC_008750.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO1264 hypothetical oxidoreductase; FAD dependent oxidoreductase 3509811 4657730 Sputw3181_3074 Shewanella sp. W3-18-1 FAD dependent oxidoreductase YP_964445.1 3508504 D 351745 CDS YP_964446.1 120599872 4658101 complement(3509938..3510447) 1 NC_008750.1 KEGG: son:SO1262 hypothetical protein; hypothetical protein 3510447 4658101 Sputw3181_3075 Shewanella sp. W3-18-1 hypothetical protein YP_964446.1 3509938 R 351745 CDS YP_964447.1 120599873 4658094 complement(3510507..3511364) 1 NC_008750.1 PFAM: Rhodanese domain protein; KEGG: son:SO1261 mercaptopyruvate sulfurtransferase; 3-mercaptopyruvate sulfurtransferase 3511364 4658094 Sputw3181_3076 Shewanella sp. W3-18-1 3-mercaptopyruvate sulfurtransferase YP_964447.1 3510507 R 351745 CDS YP_964448.1 120599874 4657714 complement(3511558..3511971) 1 NC_008750.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: shm:Shewmr7_3007 rare lipoprotein A; rare lipoprotein A 3511971 4657714 Sputw3181_3077 Shewanella sp. W3-18-1 rare lipoprotein A YP_964448.1 3511558 R 351745 CDS YP_964449.1 120599875 4658013 complement(3512715..3513107) 1 NC_008750.1 KEGG: xcv:XCV0132 putative secreted protein; hypothetical protein 3513107 4658013 Sputw3181_3078 Shewanella sp. W3-18-1 hypothetical protein YP_964449.1 3512715 R 351745 CDS YP_964450.1 120599876 4657695 complement(3514297..3515793) 1 NC_008750.1 PFAM: aldehyde dehydrogenase; KEGG: she:Shewmr4_2926 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 3515793 4657695 Sputw3181_3079 Shewanella sp. W3-18-1 aldehyde dehydrogenase YP_964450.1 3514297 R 351745 CDS YP_964451.1 120599877 4657683 3516074..3517426 1 NC_008750.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 3517426 4657683 Sputw3181_3080 Shewanella sp. W3-18-1 beta alanine--pyruvate transaminase YP_964451.1 3516074 D 351745 CDS YP_964452.1 120599878 4657682 3517496..3518986 1 NC_008750.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: she:Shewmr4_2928 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 3518986 4657682 Sputw3181_3081 Shewanella sp. W3-18-1 methylmalonate-semialdehyde dehydrogenase YP_964452.1 3517496 D 351745 CDS YP_964453.1 120599879 4657884 3519017..3519382 1 NC_008750.1 PFAM: protein of unknown function DUF861, cupin_3; KEGG: shm:Shewmr7_3011 protein of unknown function DUF861, cupin_3; hypothetical protein 3519382 4657884 Sputw3181_3082 Shewanella sp. W3-18-1 hypothetical protein YP_964453.1 3519017 D 351745 CDS YP_964454.1 120599880 4657833 3519566..3520288 1 NC_008750.1 KEGG: shm:Shewmr7_3012 hypothetical protein; hypothetical protein 3520288 4657833 Sputw3181_3083 Shewanella sp. W3-18-1 hypothetical protein YP_964454.1 3519566 D 351745 CDS YP_964455.1 120599881 4657815 complement(3520412..3521710) 1 NC_008750.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3503 glucose/galactose transporter; glucose/galactose transporter 3521710 4657815 Sputw3181_3084 Shewanella sp. W3-18-1 glucose/galactose transporter YP_964455.1 3520412 R 351745 CDS YP_964456.1 120599882 4657788 complement(3523339..3524508) 1 NC_008750.1 KEGG: she:Shewmr4_2933 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 3524508 4657788 Sputw3181_3087 Shewanella sp. W3-18-1 N-acetylglucosamine-6-phosphate deacetylase YP_964456.1 3523339 R 351745 CDS YP_964457.1 120599883 4657811 complement(3524642..3525640) 1 NC_008750.1 PFAM: sugar isomerase (SIS); KEGG: shm:Shewmr7_3016 glutamine--fructose-6-phosphate transaminase (isomerizing); glutamine--fructose-6-phosphate transaminase (isomerizing) 3525640 4657811 Sputw3181_3088 Shewanella sp. W3-18-1 glutamine--fructose-6-phosphate transaminase (isomerizing) YP_964457.1 3524642 R 351745 CDS YP_964458.1 120599884 4657790 complement(3525658..3526614) 1 NC_008750.1 PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: shm:Shewmr7_3017 ATPase, BadF/BadG/BcrA/BcrD type; BadF/BadG/BcrA/BcrD type ATPase 3526614 4657790 Sputw3181_3089 Shewanella sp. W3-18-1 BadF/BadG/BcrA/BcrD type ATPase YP_964458.1 3525658 R 351745 CDS YP_964459.1 120599885 4657920 complement(3526815..3529517) 1 NC_008750.1 PFAM: glycoside hydrolase, family 20; Carbohydrate-binding, chitobiase/hexosaminidase-type domain protein; glycoside hydrolase, family 20 domain protein; KEGG: she:Shewmr4_2936 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase 3529517 4657920 Sputw3181_3090 Shewanella sp. W3-18-1 beta-N-acetylhexosaminidase YP_964459.1 3526815 R 351745 CDS YP_964460.1 120599886 4658334 complement(3529772..3532390) 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_3024 TonB-dependent receptor; TonB-dependent receptor 3532390 4658334 Sputw3181_3091 Shewanella sp. W3-18-1 TonB-dependent receptor YP_964460.1 3529772 R 351745 CDS YP_964461.1 120599887 4657825 3532815..3533831 1 NC_008750.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: shm:Shewmr7_3025 transcriptional regulator, LacI family; regulatory protein, LacI 3533831 4657825 Sputw3181_3092 Shewanella sp. W3-18-1 regulatory protein, LacI YP_964461.1 3532815 D 351745 CDS YP_964462.1 120599888 4657842 complement(3533895..3535184) 1 NC_008750.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: shm:Shewmr7_3026 NADH dehydrogenase; NADH dehydrogenase 3535184 4657842 Sputw3181_3093 Shewanella sp. W3-18-1 NADH dehydrogenase YP_964462.1 3533895 R 351745 CDS YP_964463.1 120599889 4657848 complement(3535372..3535710) 1 NC_008750.1 PFAM: nitrogen regulatory protein P-II; KEGG: shm:Shewmr7_3027 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3535710 4657848 Sputw3181_3094 Shewanella sp. W3-18-1 nitrogen regulatory protein P-II YP_964463.1 3535372 R 351745 CDS YP_964464.1 120599890 4657859 3535961..3536473 1 NC_008750.1 KEGG: shm:Shewmr7_3028 methylation site containing protein; methylation site containing protein 3536473 4657859 Sputw3181_3095 Shewanella sp. W3-18-1 methylation site containing protein YP_964464.1 3535961 D 351745 CDS YP_964465.1 120599891 4657877 3536624..3537109 1 NC_008750.1 KEGG: shm:Shewmr7_3029 methylation site containing protein; methylation site containing protein 3537109 4657877 Sputw3181_3096 Shewanella sp. W3-18-1 methylation site containing protein YP_964465.1 3536624 D 351745 CDS YP_964466.1 120599892 4657892 complement(3537213..3537509) 1 NC_008750.1 KEGG: she:Shewmr4_2948 hypothetical protein; hypothetical protein 3537509 4657892 Sputw3181_3097 Shewanella sp. W3-18-1 hypothetical protein YP_964466.1 3537213 R 351745 CDS YP_964467.1 120599893 4657902 complement(3537506..3537898) 1 NC_008750.1 KEGG: shm:Shewmr7_3031 methylation site containing protein; methylation site containing protein 3537898 4657902 Sputw3181_3098 Shewanella sp. W3-18-1 methylation site containing protein YP_964467.1 3537506 R 351745 CDS YP_964468.1 120599894 4657928 complement(3537905..3541402) 1 NC_008750.1 KEGG: she:Shewmr4_2950 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein 3541402 4657928 Sputw3181_3099 Shewanella sp. W3-18-1 type IV pilin biogenesis protein YP_964468.1 3537905 R 351745 CDS YP_964469.1 120599895 4657955 complement(3541407..3541841) 1 NC_008750.1 KEGG: she:Shewmr4_2951 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX 3541841 4657955 Sputw3181_3100 Shewanella sp. W3-18-1 type IV pilus assembly protein PilX YP_964469.1 3541407 R 351745 CDS YP_964470.1 120599896 4657963 complement(3541854..3542837) 1 NC_008750.1 KEGG: shm:Shewmr7_3034 prepilin-type cleavage/methylation-like protein; prepilin-type cleavage/methylation-like protein 3542837 4657963 Sputw3181_3101 Shewanella sp. W3-18-1 prepilin-type cleavage/methylation-like protein YP_964470.1 3541854 R 351745 CDS YP_964471.1 120599897 4657967 complement(3542838..3543389) 1 NC_008750.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: shm:Shewmr7_3035 type IV pilus modification protein PilV; type IV pilus modification protein PilV 3543389 4657967 Sputw3181_3102 Shewanella sp. W3-18-1 type IV pilus modification protein PilV YP_964471.1 3542838 R 351745 CDS YP_964472.1 120599898 4657978 complement(3543606..3544562) 1 NC_008750.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3544562 ispH 4657978 ispH Shewanella sp. W3-18-1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_964472.1 3543606 R 351745 CDS YP_964473.1 120599899 4657985 complement(3544564..3544986) 1 NC_008750.1 KEGG: shm:Shewmr7_3037 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 3544986 4657985 Sputw3181_3104 Shewanella sp. W3-18-1 peptidylprolyl isomerase, FKBP-type YP_964473.1 3544564 R 351745 CDS YP_964474.1 120599900 4658010 complement(3544983..3545498) 1 NC_008750.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 3545498 lspA 4658010 lspA Shewanella sp. W3-18-1 lipoprotein signal peptidase YP_964474.1 3544983 R 351745 CDS YP_964475.1 120599901 4658046 complement(3545508..3548330) 1 NC_008750.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 3548330 ileS 4658046 ileS Shewanella sp. W3-18-1 isoleucyl-tRNA synthetase YP_964475.1 3545508 R 351745 CDS YP_964476.1 120599902 4658060 complement(3548363..3549298) 1 NC_008750.1 KEGG: she:Shewmr4_2958 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; riboflavin biosynthesis protein RibF 3549298 4658060 Sputw3181_3107 Shewanella sp. W3-18-1 riboflavin biosynthesis protein RibF YP_964476.1 3548363 R 351745 CDS YP_964477.1 120599903 4658073 complement(3549364..3550923) 1 NC_008750.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: she:Shewmr4_2959 integral membrane protein MviN; integral membrane protein MviN 3550923 4658073 Sputw3181_3108 Shewanella sp. W3-18-1 integral membrane protein MviN YP_964477.1 3549364 R 351745 CDS YP_964478.1 120599904 4658098 3551176..3551442 1 NC_008750.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3551442 rpsT 4658098 rpsT Shewanella sp. W3-18-1 30S ribosomal protein S20 YP_964478.1 3551176 D 351745 CDS YP_964479.1 120599905 4658140 complement(3551498..3551794) 1 NC_008750.1 PFAM: regulatory protein, ArsR; KEGG: shm:Shewmr7_3043 transcriptional regulator, ArsR family; regulatory protein ArsR 3551794 4658140 Sputw3181_3110 Shewanella sp. W3-18-1 regulatory protein ArsR YP_964479.1 3551498 R 351745 CDS YP_964480.1 120599906 4658144 3551930..3553339 1 NC_008750.1 PFAM: peptidase M20; peptidase M28; KEGG: she:Shewmr4_2962 peptidase M28; peptidase M28 3553339 4658144 Sputw3181_3111 Shewanella sp. W3-18-1 peptidase M28 YP_964480.1 3551930 D 351745 CDS YP_964481.1 120599907 4658145 complement(3553399..3554172) 1 NC_008750.1 PFAM: protein of unknown function DUF328; KEGG: shm:Shewmr7_3045 protein of unknown function DUF328; hypothetical protein 3554172 4658145 Sputw3181_3112 Shewanella sp. W3-18-1 hypothetical protein YP_964481.1 3553399 R 351745 CDS YP_964482.1 120599908 4658148 complement(3554301..3555746) 1 NC_008750.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: she:Shewmr4_2964 amino acid carrier protein; amino acid carrier protein 3555746 4658148 Sputw3181_3113 Shewanella sp. W3-18-1 amino acid carrier protein YP_964482.1 3554301 R 351745 CDS YP_964483.1 120599909 4658157 3556174..3558540 1 NC_008750.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: son:SO3542 putative phosphoketolase; putative phosphoketolase 3558540 4658157 Sputw3181_3114 Shewanella sp. W3-18-1 putative phosphoketolase YP_964483.1 3556174 D 351745 CDS YP_964484.1 120599910 4658172 3558794..3559894 1 NC_008750.1 PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: son:SO3545 OmpA family protein; OmpA/MotB domain-containing protein 3559894 4658172 Sputw3181_3115 Shewanella sp. W3-18-1 OmpA/MotB domain-containing protein YP_964484.1 3558794 D 351745 CDS YP_964485.1 120599911 4658193 3560144..3561100 1 NC_008750.1 KEGG: shm:Shewmr7_3049 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 3561100 4658193 Sputw3181_3116 Shewanella sp. W3-18-1 transaldolase B YP_964485.1 3560144 D 351745 CDS YP_964486.1 120599912 4658194 3561121..3562758 1 NC_008750.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 3562758 pgi 4658194 pgi Shewanella sp. W3-18-1 glucose-6-phosphate isomerase YP_964486.1 3561121 D 351745 CDS YP_964487.1 120599913 4658205 3562975..3563160 1 NC_008750.1 KEGG: shm:Shewmr7_3051 hypothetical protein; hypothetical protein 3563160 4658205 Sputw3181_3118 Shewanella sp. W3-18-1 hypothetical protein YP_964487.1 3562975 D 351745 CDS YP_964488.1 120599914 4658230 complement(3563254..3563790) 1 NC_008750.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: shm:Shewmr7_3052 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein 3563790 4658230 Sputw3181_3119 Shewanella sp. W3-18-1 hemerythrin HHE cation binding domain-containing protein YP_964488.1 3563254 R 351745 CDS YP_964489.1 120599915 4658229 complement(3564012..3564767) 1 NC_008750.1 KEGG: she:Shewmr4_2971 hypothetical protein; hypothetical protein 3564767 4658229 Sputw3181_3120 Shewanella sp. W3-18-1 hypothetical protein YP_964489.1 3564012 R 351745 CDS YP_964490.1 120599916 4658241 complement(3564760..3565365) 1 NC_008750.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: shm:Shewmr7_3054 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3565365 4658241 Sputw3181_3121 Shewanella sp. W3-18-1 ECF subfamily RNA polymerase sigma-24 factor YP_964490.1 3564760 R 351745 CDS YP_964491.1 120599917 4658244 complement(3565452..3567368) 1 NC_008750.1 PFAM: von Willebrand factor, type A; KEGG: son:SO3552 von Willebrand factor type A domain protein; von Willebrand factor type A domain-containing protein 3567368 4658244 Sputw3181_3122 Shewanella sp. W3-18-1 von Willebrand factor type A domain-containing protein YP_964491.1 3565452 R 351745 CDS YP_964492.1 120599918 4658259 3567571..3569328 1 NC_008750.1 putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM 3569328 4658259 Sputw3181_3123 Shewanella sp. W3-18-1 putative sulfate transporter YchM YP_964492.1 3567571 D 351745 CDS YP_964493.1 120599919 4658280 3569608..3570099 1 NC_008750.1 KEGG: she:Shewmr4_2975 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 3570099 4658280 Sputw3181_3124 Shewanella sp. W3-18-1 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_964493.1 3569608 D 351745 CDS YP_964494.1 120599920 4658284 3570099..3571196 1 NC_008750.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 3571196 4658284 Sputw3181_3125 Shewanella sp. W3-18-1 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_964494.1 3570099 D 351745 CDS YP_964495.1 120599921 4658296 3571349..3572617 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: shm:Shewmr7_3059 diguanylate cyclase with GAF sensor; diguanylate cyclase 3572617 4658296 Sputw3181_3126 Shewanella sp. W3-18-1 diguanylate cyclase YP_964495.1 3571349 D 351745 CDS YP_964496.1 120599922 4658302 complement(3572710..3573327) 1 NC_008750.1 KEGG: she:Shewmr4_2978 hypothetical protein; hypothetical protein 3573327 4658302 Sputw3181_3127 Shewanella sp. W3-18-1 hypothetical protein YP_964496.1 3572710 R 351745 CDS YP_964497.1 120599923 4658320 complement(3573335..3573778) 1 NC_008750.1 KEGG: shm:Shewmr7_3061 hypothetical protein; hypothetical protein 3573778 4658320 Sputw3181_3128 Shewanella sp. W3-18-1 hypothetical protein YP_964497.1 3573335 R 351745 CDS YP_964498.1 120599924 4658399 complement(3573796..3575457) 1 NC_008750.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 3575457 4658399 Sputw3181_3129 Shewanella sp. W3-18-1 glutamate--cysteine ligase YP_964498.1 3573796 R 351745 CDS YP_964499.1 120599925 4658408 complement(3575631..3578465) 1 NC_008750.1 PFAM: peptidase M16 domain protein; KEGG: she:Shewmr4_2981 peptidase M16 domain protein; peptidase M16 domain-containing protein 3578465 4658408 Sputw3181_3130 Shewanella sp. W3-18-1 peptidase M16 domain-containing protein YP_964499.1 3575631 R 351745 CDS YP_964500.1 120599926 4658433 complement(3578615..3579040) 1 NC_008750.1 KEGG: she:Shewmr4_2982 hypothetical protein; hypothetical protein 3579040 4658433 Sputw3181_3131 Shewanella sp. W3-18-1 hypothetical protein YP_964500.1 3578615 R 351745 CDS YP_964501.1 120599927 4658349 3579415..3580674 1 NC_008750.1 PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_3065 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 3580674 4658349 Sputw3181_3132 Shewanella sp. W3-18-1 sodium:dicarboxylate symporter YP_964501.1 3579415 D 351745 CDS YP_964502.1 120599928 4659005 3580848..3581015 1 NC_008750.1 KEGG: shm:Shewmr7_3066 hypothetical protein; hypothetical protein 3581015 4659005 Sputw3181_3133 Shewanella sp. W3-18-1 hypothetical protein YP_964502.1 3580848 D 351745 CDS YP_964503.1 120599929 4658625 complement(3581056..3582186) 1 NC_008750.1 KEGG: she:Shewmr4_2985 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; sodium ion-translocating decarboxylase subunit beta 3582186 4658625 Sputw3181_3134 Shewanella sp. W3-18-1 sodium ion-translocating decarboxylase subunit beta YP_964503.1 3581056 R 351745 CDS YP_964504.1 120599930 4658626 complement(3582195..3584021) 1 NC_008750.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 3584021 4658626 Sputw3181_3135 Shewanella sp. W3-18-1 oxaloacetate decarboxylase YP_964504.1 3582195 R 351745 CDS YP_964505.1 120599931 4658642 complement(3584033..3584299) 1 NC_008750.1 TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: she:Shewmr4_2987 sodium pump decarboxylases, gamma subunit; sodium pump decarboxylase subunit gamma 3584299 4658642 Sputw3181_3136 Shewanella sp. W3-18-1 sodium pump decarboxylase subunit gamma YP_964505.1 3584033 R 351745 CDS YP_964506.1 120599932 4658524 complement(3584748..3585074) 1 NC_008750.1 KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB 3585074 4658524 Sputw3181_3137 Shewanella sp. W3-18-1 ISSod10, transposase OrfB YP_964506.1 3584748 R 351745 CDS YP_964507.1 120599933 4658656 complement(3585361..3585609) 1 NC_008750.1 KEGG: son:SO0211 ISSod10, transposase OrfA; ISSod10, transposase OrfA 3585609 4658656 Sputw3181_3138 Shewanella sp. W3-18-1 ISSod10, transposase OrfA YP_964507.1 3585361 R 351745 CDS YP_964508.1 120599934 4659248 complement(3591738..3592589) 1 NC_008750.1 KEGG: son:SO3575 CDP-diacylglycerol--serine O-phosphatidyltransferase, putative; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 3592589 4659248 Sputw3181_3139 Shewanella sp. W3-18-1 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_964508.1 3591738 R 351745 CDS YP_964509.1 120599935 4658690 3592685..3593152 1 NC_008750.1 KEGG: shm:Shewmr7_3071 hypothetical protein; hypothetical protein 3593152 4658690 Sputw3181_3140 Shewanella sp. W3-18-1 hypothetical protein YP_964509.1 3592685 D 351745 CDS YP_964510.1 120599936 4658705 complement(3593256..3595829) 1 NC_008750.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3072 ATPase AAA-2 domain protein; ATPase 3595829 4658705 Sputw3181_3141 Shewanella sp. W3-18-1 ATPase YP_964510.1 3593256 R 351745 CDS YP_964511.1 120599937 4658351 complement(3596028..3596762) 1 NC_008750.1 PFAM: protein of unknown function DUF152; KEGG: son:SO3578 conserved hypothetical protein TIGR00726; hypothetical protein 3596762 4658351 Sputw3181_3142 Shewanella sp. W3-18-1 hypothetical protein YP_964511.1 3596028 R 351745 CDS YP_964512.1 120599938 4658754 complement(3596763..3597737) 1 NC_008750.1 KEGG: shm:Shewmr7_3074 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 3597737 4658754 Sputw3181_3143 Shewanella sp. W3-18-1 RluA family pseudouridine synthase YP_964512.1 3596763 R 351745 CDS YP_964513.1 120599939 4658761 3597860..3598621 1 NC_008750.1 KEGG: shm:Shewmr7_3075 putative lipoprotein; putative lipoprotein 3598621 4658761 Sputw3181_3144 Shewanella sp. W3-18-1 putative lipoprotein YP_964513.1 3597860 D 351745 CDS YP_964514.1 120599940 4659197 3599373..3600998 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3076 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3600998 4659197 Sputw3181_3145 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_964514.1 3599373 D 351745 CDS YP_964515.1 120599941 4658874 complement(3601020..3601730) 1 NC_008750.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: she:Shewmr4_2997 pseudouridine synthase, Rsu; pseudouridine synthase 3601730 4658874 Sputw3181_3146 Shewanella sp. W3-18-1 pseudouridine synthase YP_964515.1 3601020 R 351745 CDS YP_964516.1 120599942 4658877 complement(3601792..3602424) 1 NC_008750.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: she:Shewmr4_2998 putative transcriptional regulator; putative transcriptional regulator 3602424 4658877 Sputw3181_3147 Shewanella sp. W3-18-1 putative transcriptional regulator YP_964516.1 3601792 R 351745 CDS YP_964517.1 120599943 4658880 3602571..3603185 1 NC_008750.1 PFAM: NADPH-dependent FMN reductase; KEGG: shm:Shewmr7_3080 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 3603185 4658880 Sputw3181_3148 Shewanella sp. W3-18-1 NADPH-dependent FMN reductase YP_964517.1 3602571 D 351745 CDS YP_964518.1 120599944 4658891 3603242..3603658 1 NC_008750.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: shm:Shewmr7_3081 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3603658 4658891 Sputw3181_3149 Shewanella sp. W3-18-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_964518.1 3603242 D 351745 CDS YP_964519.1 120599945 4658901 3603853..3604323 1 NC_008750.1 KEGG: son:SO3587 hypothetical protein; hypothetical protein 3604323 4658901 Sputw3181_3150 Shewanella sp. W3-18-1 hypothetical protein YP_964519.1 3603853 D 351745 CDS YP_964520.1 120599946 4658905 complement(3604377..3604940) 1 NC_008750.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: son:SO3588 gpr1/fun34/YaaH family protein; GPR1/FUN34/yaaH family protein 3604940 4658905 Sputw3181_3151 Shewanella sp. W3-18-1 GPR1/FUN34/yaaH family protein YP_964520.1 3604377 R 351745 CDS YP_964521.1 120599947 4658913 3605703..3605939 1 NC_008750.1 KEGG: shm:Shewmr7_3084 hypothetical protein; hypothetical protein 3605939 4658913 Sputw3181_3152 Shewanella sp. W3-18-1 hypothetical protein YP_964521.1 3605703 D 351745 CDS YP_964522.1 120599948 4658915 3606318..3607184 1 NC_008750.1 PFAM: MltA-interacting MipA family protein; KEGG: son:SO3592 putative outer membrane protein; MltA-interacting MipA family protein 3607184 4658915 Sputw3181_3153 Shewanella sp. W3-18-1 MltA-interacting MipA family protein YP_964522.1 3606318 D 351745 CDS YP_964523.1 120599949 4658922 3607190..3607603 1 NC_008750.1 KEGG: shm:Shewmr7_3086 hypothetical protein; hypothetical protein 3607603 4658922 Sputw3181_3154 Shewanella sp. W3-18-1 hypothetical protein YP_964523.1 3607190 D 351745 CDS YP_964524.1 120599950 4658929 3607603..3608316 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3087 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3608316 4658929 Sputw3181_3155 Shewanella sp. W3-18-1 two component transcriptional regulator YP_964524.1 3607603 D 351745 CDS YP_964525.1 120599951 4659024 3608326..3609594 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_3007 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3609594 4659024 Sputw3181_3156 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_964525.1 3608326 D 351745 CDS YP_964526.1 120599952 4659023 complement(3609681..3609989) 1 NC_008750.1 PFAM: protein of unknown function DUF1289; KEGG: shm:Shewmr7_3089 protein of unknown function DUF1289; hypothetical protein 3609989 4659023 Sputw3181_3157 Shewanella sp. W3-18-1 hypothetical protein YP_964526.1 3609681 R 351745 CDS YP_964527.1 120599953 4659548 3610161..3610697 1 NC_008750.1 KEGG: she:Shewmr4_3009 hypothetical protein; hypothetical protein 3610697 4659548 Sputw3181_3158 Shewanella sp. W3-18-1 hypothetical protein YP_964527.1 3610161 D 351745 CDS YP_964528.1 120599954 4659587 complement(3610773..3611651) 1 NC_008750.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 3611651 cysM 4659587 cysM Shewanella sp. W3-18-1 cysteine synthase B YP_964528.1 3610773 R 351745 CDS YP_964529.1 120599955 4659183 3611863..3612870 1 NC_008750.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: she:Shewmr4_3012 sulfate ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter substrate-binding protein 3612870 4659183 Sputw3181_3160 Shewanella sp. W3-18-1 sulfate ABC transporter substrate-binding protein YP_964529.1 3611863 D 351745 CDS YP_964530.1 120599956 4659191 3613057..3613902 1 NC_008750.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO3600 sulfate ABC transporter, permease protein; sulfate ABC transporter permease 3613902 4659191 Sputw3181_3161 Shewanella sp. W3-18-1 sulfate ABC transporter permease YP_964530.1 3613057 D 351745 CDS YP_964531.1 120599957 4658975 3613912..3614778 1 NC_008750.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO3601 sulfate ABC transporter, permease protein; sulfate ABC transporter permease 3614778 4658975 Sputw3181_3162 Shewanella sp. W3-18-1 sulfate ABC transporter permease YP_964531.1 3613912 D 351745 CDS YP_964532.1 120599958 4659061 3614775..3615905 1 NC_008750.1 KEGG: son:SO3602 sulfate ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 3615905 4659061 Sputw3181_3163 Shewanella sp. W3-18-1 sulfate ABC transporter ATPase YP_964532.1 3614775 D 351745 CDS YP_964533.1 120599959 4659212 3616228..3617403 1 NC_008750.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 3617403 purT 4659212 purT Shewanella sp. W3-18-1 phosphoribosylglycinamide formyltransferase 2 YP_964533.1 3616228 D 351745 CDS YP_964534.1 120599960 4659215 3617654..3619378 1 NC_008750.1 PFAM: pseudouridine synthase; KEGG: sdn:Sden_0688 pseudouridine synthase; pseudouridine synthase 3619378 4659215 Sputw3181_3165 Shewanella sp. W3-18-1 pseudouridine synthase YP_964534.1 3617654 D 351745 CDS YP_964535.1 120599961 4659231 3619533..3621002 1 NC_008750.1 KEGG: she:Shewmr4_3021 hypothetical protein; hypothetical protein 3621002 4659231 Sputw3181_3166 Shewanella sp. W3-18-1 hypothetical protein YP_964535.1 3619533 D 351745 CDS YP_964536.1 120599962 4659270 3620992..3623265 1 NC_008750.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_3103 tetratricopeptide TPR_2 repeat protein; hypothetical protein 3623265 4659270 Sputw3181_3167 Shewanella sp. W3-18-1 hypothetical protein YP_964536.1 3620992 D 351745 CDS YP_964537.1 120599963 4659272 3623967..3624782 1 NC_008750.1 hypothetical protein 3624782 4659272 Sputw3181_3168 Shewanella sp. W3-18-1 hypothetical protein YP_964537.1 3623967 D 351745 CDS YP_964538.1 120599964 4659276 3624910..3625242 1 NC_008750.1 hypothetical protein 3625242 4659276 Sputw3181_3169 Shewanella sp. W3-18-1 hypothetical protein YP_964538.1 3624910 D 351745 CDS YP_964539.1 120599965 4659281 complement(3625622..3626575) 1 NC_008750.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: she:Shewmr4_0913 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 3626575 4659281 Sputw3181_3170 Shewanella sp. W3-18-1 D-isomer specific 2-hydroxyacid dehydrogenase YP_964539.1 3625622 R 351745 CDS YP_964540.1 120599966 4659296 complement(3626600..3627238) 1 NC_008750.1 KEGG: shm:Shewmr7_3108 hypothetical protein; hypothetical protein 3627238 4659296 Sputw3181_3171 Shewanella sp. W3-18-1 hypothetical protein YP_964540.1 3626600 R 351745 CDS YP_964541.1 120599967 4659308 complement(3627280..3628068) 1 NC_008750.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 3628068 djlA 4659308 djlA Shewanella sp. W3-18-1 Dna-J like membrane chaperone protein YP_964541.1 3627280 R 351745 CDS YP_964542.1 120599968 4659311 complement(3628135..3628812) 1 NC_008750.1 PFAM: Nucleotidyl transferase; KEGG: son:SO3634 nucleotidyltransferase family protein; nucleotidyl transferase 3628812 4659311 Sputw3181_3173 Shewanella sp. W3-18-1 nucleotidyl transferase YP_964542.1 3628135 R 351745 CDS YP_964543.1 120599969 4659319 complement(3628813..3629892) 1 NC_008750.1 PFAM: aminoglycoside phosphotransferase; KEGG: she:Shewmr4_0909 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 3629892 4659319 Sputw3181_3174 Shewanella sp. W3-18-1 aminoglycoside phosphotransferase YP_964543.1 3628813 R 351745 CDS YP_964544.1 120599970 4659340 3630009..3632306 1 NC_008750.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: shm:Shewmr7_3112 organic solvent tolerance protein; organic solvent tolerance protein 3632306 4659340 Sputw3181_3175 Shewanella sp. W3-18-1 organic solvent tolerance protein YP_964544.1 3630009 D 351745 CDS YP_964545.1 120599971 4659344 3632550..3633854 1 NC_008750.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: she:Shewmr4_0907 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3633854 4659344 Sputw3181_3176 Shewanella sp. W3-18-1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_964545.1 3632550 D 351745 CDS YP_964546.1 120599972 4659348 3633861..3634847 1 NC_008750.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3634847 pdxA 4659348 pdxA Shewanella sp. W3-18-1 4-hydroxythreonine-4-phosphate dehydrogenase YP_964546.1 3633861 D 351745 CDS YP_964547.1 120599973 4659372 3634863..3635669 1 NC_008750.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3635669 ksgA 4659372 ksgA Shewanella sp. W3-18-1 dimethyladenosine transferase YP_964547.1 3634863 D 351745 CDS YP_964548.1 120599974 4659398 3635721..3636101 1 NC_008750.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 3636101 apaG 4659398 apaG Shewanella sp. W3-18-1 ApaG protein YP_964548.1 3635721 D 351745 CDS YP_964549.1 120599975 4659418 3636123..3636947 1 NC_008750.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 3636947 apaH 4659418 apaH Shewanella sp. W3-18-1 diadenosine tetraphosphatase YP_964549.1 3636123 D 351745 CDS YP_964550.1 120599976 4659433 3637043..3639064 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_0902 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3639064 4659433 Sputw3181_3181 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_964550.1 3637043 D 351745 CDS YP_964551.1 120599977 4659461 complement(3639248..3639664) 1 NC_008750.1 KEGG: son:SO3645 hypothetical protein; hypothetical protein 3639664 4659461 Sputw3181_3182 Shewanella sp. W3-18-1 hypothetical protein YP_964551.1 3639248 R 351745 CDS YP_964552.1 120599978 4659498 complement(3639880..3640362) 1 NC_008750.1 PFAM: dihydrofolate reductase region; KEGG: shm:Shewmr7_3120 dihydrofolate reductase; dihydrofolate reductase 3640362 4659498 Sputw3181_3183 Shewanella sp. W3-18-1 dihydrofolate reductase YP_964552.1 3639880 R 351745 CDS YP_964553.1 120599979 4659511 complement(3640392..3640865) 1 NC_008750.1 KEGG: son:SO3647 hypothetical protein; hypothetical protein 3640865 4659511 Sputw3181_3184 Shewanella sp. W3-18-1 hypothetical protein YP_964553.1 3640392 R 351745 CDS YP_964554.1 120599980 4659533 complement(3640862..3641623) 1 NC_008750.1 PFAM: protein of unknown function DUF1212; KEGG: she:Shewmr4_0898 protein of unknown function DUF1212; hypothetical protein 3641623 4659533 Sputw3181_3185 Shewanella sp. W3-18-1 hypothetical protein YP_964554.1 3640862 R 351745 CDS YP_964555.1 120599981 4659537 complement(3641651..3642817) 1 NC_008750.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 3642817 obgE 4659537 obgE Shewanella sp. W3-18-1 GTPase ObgE YP_964555.1 3641651 R 351745 CDS YP_964556.1 120599982 4659549 complement(3643033..3643287) 1 NC_008750.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 3643287 rpmA 4659549 rpmA Shewanella sp. W3-18-1 50S ribosomal protein L27 YP_964556.1 3643033 R 351745 CDS YP_964557.1 120599983 4659595 complement(3643302..3643613) 1 NC_008750.1 PFAM: ribosomal protein L21; KEGG: sdn:Sden_2927 ribosomal protein L21; 50S ribosomal protein L21 3643613 rplU 4659595 rplU Shewanella sp. W3-18-1 50S ribosomal protein L21 YP_964557.1 3643302 R 351745 CDS YP_964558.1 120599984 4659636 3643865..3644860 1 NC_008750.1 PFAM: Polyprenyl synthetase; KEGG: shm:Shewmr7_3126 trans-hexaprenyltranstransferase; trans-hexaprenyltranstransferase 3644860 4659636 Sputw3181_3189 Shewanella sp. W3-18-1 trans-hexaprenyltranstransferase YP_964558.1 3643865 D 351745 CDS YP_964559.1 120599985 4659848 complement(3644923..3645588) 1 NC_008750.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 3645588 4659848 Sputw3181_3190 Shewanella sp. W3-18-1 uracil-DNA glycosylase YP_964559.1 3644923 R 351745 CDS YP_964560.1 120599986 4659868 3645772..3646314 1 NC_008750.1 KEGG: son:SO3655 pilin, putative; pilin 3646314 4659868 Sputw3181_3191 Shewanella sp. W3-18-1 pilin YP_964560.1 3645772 D 351745 CDS YP_964561.1 120599987 4659744 3646388..3646711 1 NC_008750.1 KEGG: son:SO3656 hypothetical protein; hypothetical protein 3646711 4659744 Sputw3181_3192 Shewanella sp. W3-18-1 hypothetical protein YP_964561.1 3646388 D 351745 CDS YP_964562.1 120599988 4659736 complement(3646777..3647391) 1 NC_008750.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_3132 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3647391 4659736 Sputw3181_3193 Shewanella sp. W3-18-1 lysine exporter protein LysE/YggA YP_964562.1 3646777 R 351745 CDS YP_964563.1 120599989 4659733 3647574..3648173 1 NC_008750.1 KEGG: she:Shewmr4_0888 thiol:disulfide interchange protein, putative; thiol:disulfide interchange protein 3648173 4659733 Sputw3181_3194 Shewanella sp. W3-18-1 thiol:disulfide interchange protein YP_964563.1 3647574 D 351745 CDS YP_964564.1 120599990 4659714 3648388..3649854 1 NC_008750.1 KEGG: she:Shewmr4_0887 transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AAA ATPase; Fis family transcriptional regulator 3649854 4659714 Sputw3181_3195 Shewanella sp. W3-18-1 Fis family transcriptional regulator YP_964564.1 3648388 D 351745 CDS YP_964565.1 120599991 4659925 3650025..3651488 1 NC_008750.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_3136 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3651488 4659925 Sputw3181_3196 Shewanella sp. W3-18-1 4Fe-4S ferredoxin YP_964565.1 3650025 D 351745 CDS YP_964566.1 120599992 4659928 3651978..3653579 1 NC_008750.1 PFAM: AMP-dependent synthetase and ligase; KEGG: shm:Shewmr7_3139 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3653579 4659928 Sputw3181_3197 Shewanella sp. W3-18-1 AMP-dependent synthetase and ligase YP_964566.1 3651978 D 351745 CDS YP_964567.1 120599993 4659950 complement(3653681..3655522) 1 NC_008750.1 KEGG: she:Shewmr4_0882 lipid A ABC exporter family, fused ATPase and inner membrane subunits; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein 3655522 4659950 Sputw3181_3198 Shewanella sp. W3-18-1 lipid ABC transporter ATPase/inner membrane protein YP_964567.1 3653681 R 351745 CDS YP_964568.1 120599994 4659965 complement(3655714..3656271) 1 NC_008750.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: son:SO3667 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 3656271 4659965 Sputw3181_3199 Shewanella sp. W3-18-1 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_964568.1 3655714 R 351745 CDS YP_964569.1 120599995 4659984 complement(3656307..3656879) 1 NC_008750.1 PFAM: protein of unknown function DUF1008; KEGG: son:SO3668 hypothetical protein; hypothetical protein 3656879 4659984 Sputw3181_3200 Shewanella sp. W3-18-1 hypothetical protein YP_964569.1 3656307 R 351745 CDS YP_964570.1 120599996 4660001 complement(3656906..3658996) 1 NC_008750.1 TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO3669 heme transport protein; TonB-dependent heme/hemoglobin receptor family protein 3658996 4660001 Sputw3181_3201 Shewanella sp. W3-18-1 TonB-dependent heme/hemoglobin receptor family protein YP_964570.1 3656906 R 351745 CDS YP_964571.1 120599997 4660030 3659229..3660080 1 NC_008750.1 TIGRFAM: TonB family protein; KEGG: son:SO3670 TonB1 protein; TonB family protein 3660080 4660030 Sputw3181_3202 Shewanella sp. W3-18-1 TonB family protein YP_964571.1 3659229 D 351745 CDS YP_964572.1 120599998 4660042 3660143..3660877 1 NC_008750.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO3671 TonB system transport protein ExbB1; MotA/TolQ/ExbB proton channel 3660877 4660042 Sputw3181_3203 Shewanella sp. W3-18-1 MotA/TolQ/ExbB proton channel YP_964572.1 3660143 D 351745 CDS YP_964573.1 120599999 4660058 3660874..3661095 1 NC_008750.1 KEGG: son:SO3672 TonB system transport protein ExbD1; hypothetical protein 3661095 4660058 Sputw3181_3204 Shewanella sp. W3-18-1 hypothetical protein YP_964573.1 3660874 D 351745 CDS YP_964574.1 120600000 4660068 3661392..3661796 1 NC_008750.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: sfr:Sfri_3492 transcriptional regulator, MerR family protein; MerR family transcriptional regulator 3661796 4660068 Sputw3181_3205 Shewanella sp. W3-18-1 MerR family transcriptional regulator YP_964574.1 3661392 D 351745 CDS YP_964575.1 120600001 4660096 3661876..3662223 1 NC_008750.1 PFAM: Mercuric transport protein MerT; KEGG: sfr:Sfri_3491 mercuric transport protein MerT; mercuric transporter MerT 3662223 4660096 Sputw3181_3206 Shewanella sp. W3-18-1 mercuric transporter MerT YP_964575.1 3661876 D 351745 CDS YP_964576.1 120600002 4660097 3662276..3662551 1 NC_008750.1 TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: sfr:Sfri_3490 mercuric transport protein periplasmic component; mercuric transport periplasmic protein 3662551 4660097 Sputw3181_3207 Shewanella sp. W3-18-1 mercuric transport periplasmic protein YP_964576.1 3662276 D 351745 CDS YP_964577.1 120600003 4660111 3662664..3664316 1 NC_008750.1 TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: sfr:Sfri_3488 mercuric reductase; putative mercuric reductase 3664316 4660111 Sputw3181_3208 Shewanella sp. W3-18-1 putative mercuric reductase YP_964577.1 3662664 D 351745 CDS YP_964578.1 120600004 4660119 3664554..3665144 1 NC_008750.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: xac:XACb0071 Tn5045 resolvase; resolvase domain-containing protein 3665144 4660119 Sputw3181_3209 Shewanella sp. W3-18-1 resolvase domain-containing protein YP_964578.1 3664554 D 351745 CDS YP_964579.1 120600005 4660152 3665149..3666810 1 NC_008750.1 KEGG: stm:PSLT044 putative integrase protein; putative integrase protein 3666810 4660152 Sputw3181_3210 Shewanella sp. W3-18-1 putative integrase protein YP_964579.1 3665149 D 351745 CDS YP_964580.1 120600006 4660282 3666800..3667771 1 NC_008750.1 SMART: AAA ATPase; KEGG: psp:PSPPH_B0059 ExeA-like protein; ATPase AAA 3667771 4660282 Sputw3181_3211 Shewanella sp. W3-18-1 ATPase AAA YP_964580.1 3666800 D 351745 CDS YP_964581.1 120600007 4660266 3667781..3668122 1 NC_008750.1 hypothetical protein 3668122 4660266 Sputw3181_3212 Shewanella sp. W3-18-1 hypothetical protein YP_964581.1 3667781 D 351745 CDS YP_964582.1 120600008 4660230 3668249..3668563 1 NC_008750.1 KEGG: son:SO3672 TonB system transport protein ExbD1; TonB system transport protein ExbD1 3668563 4660230 Sputw3181_3213 Shewanella sp. W3-18-1 TonB system transport protein ExbD1 YP_964582.1 3668249 D 351745 CDS YP_964583.1 120600009 4660958 3668649..3669695 1 NC_008750.1 PFAM: periplasmic binding protein; KEGG: son:SO3673 hemin ABC transporter, periplasmic hemin-binding protein; periplasmic binding protein 3669695 4660958 Sputw3181_3214 Shewanella sp. W3-18-1 periplasmic binding protein YP_964583.1 3668649 D 351745 CDS YP_964584.1 120600010 4660901 3669707..3670738 1 NC_008750.1 PFAM: transport system permease protein; KEGG: son:SO3674 hemin ABC transporter, permease protein; transport system permease 3670738 4660901 Sputw3181_3215 Shewanella sp. W3-18-1 transport system permease YP_964584.1 3669707 D 351745 CDS YP_964585.1 120600011 4660433 3670751..3671575 1 NC_008750.1 with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 3671575 hmuV 4660433 hmuV Shewanella sp. W3-18-1 hemin importer ATP-binding subunit YP_964585.1 3670751 D 351745 CDS YP_964586.1 120600012 4660249 3671689..3672033 1 NC_008750.1 KEGG: son:SO3676 hypothetical protein; hypothetical protein 3672033 4660249 Sputw3181_3217 Shewanella sp. W3-18-1 hypothetical protein YP_964586.1 3671689 D 351745 CDS YP_964587.1 120600013 4660464 3672295..3672588 1 NC_008750.1 hypothetical protein 3672588 4660464 Sputw3181_3218 Shewanella sp. W3-18-1 hypothetical protein YP_964587.1 3672295 D 351745 CDS YP_964588.1 120600014 4660476 complement(3673211..3674188) 1 NC_008750.1 PFAM: protein of unknown function DUF1568; KEGG: son:SO1890 hypothetical protein; hypothetical protein 3674188 4660476 Sputw3181_3219 Shewanella sp. W3-18-1 hypothetical protein YP_964588.1 3673211 R 351745 CDS YP_964589.1 120600015 4660575 complement(3674595..3674771) 1 NC_008750.1 KEGG: sfr:Sfri_0964 hypothetical protein; hypothetical protein 3674771 4660575 Sputw3181_3220 Shewanella sp. W3-18-1 hypothetical protein YP_964589.1 3674595 R 351745 CDS YP_964590.1 120600016 4660591 complement(3675055..3676593) 1 NC_008750.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: shm:Shewmr7_0987 peptidase M17, leucyl aminopeptidase domain protein; peptidase M17, leucyl aminopeptidase domain-containing protein 3676593 4660591 Sputw3181_3221 Shewanella sp. W3-18-1 peptidase M17, leucyl aminopeptidase domain-containing protein YP_964590.1 3675055 R 351745 CDS YP_964591.1 120600017 4660618 3676798..3678273 1 NC_008750.1 KEGG: she:Shewmr4_0948 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase 3678273 4660618 Sputw3181_3222 Shewanella sp. W3-18-1 aminoacyl-histidine dipeptidase YP_964591.1 3676798 D 351745 CDS YP_964592.1 120600018 4660642 complement(3678429..3679361) 1 NC_008750.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: ilo:IL2191 predicted permease, DMT superfamily; hypothetical protein 3679361 4660642 Sputw3181_3223 Shewanella sp. W3-18-1 hypothetical protein YP_964592.1 3678429 R 351745 CDS YP_964593.1 120600019 4660652 3679454..3680353 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ilo:IL2190 transcriptional regulator, LysR family; LysR family transcriptional regulator 3680353 4660652 Sputw3181_3224 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_964593.1 3679454 D 351745 CDS YP_964594.1 120600020 4660675 complement(3680396..3681472) 1 NC_008750.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 3681472 4660675 Sputw3181_3225 Shewanella sp. W3-18-1 DNA polymerase IV YP_964594.1 3680396 R 351745 CDS YP_964595.1 120600021 4660676 complement(3681606..3683609) 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_0946 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3683609 4660676 Sputw3181_3226 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_964595.1 3681606 R 351745 CDS YP_964596.1 120600022 4660719 complement(3683905..3684372) 1 NC_008750.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: son:SO1112 bacterioferritin subunit 1; bacterioferritin 3684372 4660719 Sputw3181_3227 Shewanella sp. W3-18-1 bacterioferritin YP_964596.1 3683905 R 351745 CDS YP_964597.1 120600023 4660729 complement(3684382..3684855) 1 NC_008750.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: shm:Shewmr7_0982 bacterioferritin; bacterioferritin 3684855 4660729 Sputw3181_3228 Shewanella sp. W3-18-1 bacterioferritin YP_964597.1 3684382 R 351745 CDS YP_964598.1 120600024 4660755 complement(3685101..3685325) 1 NC_008750.1 PFAM: protein of unknown function DUF539; KEGG: shm:Shewmr7_0981 protein of unknown function DUF539; hypothetical protein 3685325 4660755 Sputw3181_3229 Shewanella sp. W3-18-1 hypothetical protein YP_964598.1 3685101 R 351745 CDS YP_964599.1 120600025 4660767 complement(3685337..3686380) 1 NC_008750.1 PFAM: ApbE family lipoprotein; KEGG: she:Shewmr4_0942 ApbE family lipoprotein; ApbE family lipoprotein 3686380 4660767 Sputw3181_3230 Shewanella sp. W3-18-1 ApbE family lipoprotein YP_964599.1 3685337 R 351745 CDS YP_964600.1 120600026 4660414 complement(3686480..3687736) 1 NC_008750.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 3687736 4660414 Sputw3181_3231 Shewanella sp. W3-18-1 Na(+)-translocating NADH-quinone reductase subunit F YP_964600.1 3686480 R 351745 CDS YP_964601.1 120600027 4660800 complement(3687783..3688391) 1 NC_008750.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 3688391 4660800 Sputw3181_3232 Shewanella sp. W3-18-1 Na(+)-translocating NADH-quinone reductase subunit E YP_964601.1 3687783 R 351745 CDS YP_964602.1 120600028 4660830 complement(3688397..3689029) 1 NC_008750.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 3689029 4660830 Sputw3181_3233 Shewanella sp. W3-18-1 Na(+)-translocating NADH-quinone reductase subunit D YP_964602.1 3688397 R 351745 CDS YP_964603.1 120600029 4660832 complement(3689029..3689817) 1 NC_008750.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 3689817 4660832 Sputw3181_3234 Shewanella sp. W3-18-1 Na(+)-translocating NADH-quinone reductase subunit C YP_964603.1 3689029 R 351745 CDS YP_964604.1 120600030 4660843 complement(3689810..3691009) 1 NC_008750.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 3691009 4660843 Sputw3181_3235 Shewanella sp. W3-18-1 Na(+)-translocating NADH-quinone reductase subunit B YP_964604.1 3689810 R 351745 CDS YP_964605.1 120600031 4660846 complement(3691009..3692343) 1 NC_008750.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 3692343 4660846 Sputw3181_3236 Shewanella sp. W3-18-1 Na(+)-translocating NADH-quinone reductase subunit A YP_964605.1 3691009 R 351745 CDS YP_964606.1 120600032 4660853 complement(3692745..3694796) 1 NC_008750.1 PFAM: TonB-dependent receptor; KEGG: she:Shewmr4_0935 TonB-dependent receptor; TonB-dependent receptor 3694796 4660853 Sputw3181_3237 Shewanella sp. W3-18-1 TonB-dependent receptor YP_964606.1 3692745 R 351745 CDS YP_964607.1 120600033 4660863 complement(3694962..3695471) 1 NC_008750.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 3695471 4660863 Sputw3181_3238 Shewanella sp. W3-18-1 S-ribosylhomocysteinase YP_964607.1 3694962 R 351745 CDS YP_964608.1 120600034 4660963 complement(3695598..3696707) 1 NC_008750.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: shm:Shewmr7_0971 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter- DctP subunit 3696707 4660963 Sputw3181_3239 Shewanella sp. W3-18-1 TRAP dicarboxylate transporter- DctP subunit YP_964608.1 3695598 R 351745 CDS YP_964609.1 120600035 4660968 complement(3696906..3697226) 1 NC_008750.1 PFAM: BolA family protein; KEGG: shm:Shewmr7_0970 BolA family protein; BolA family protein 3697226 4660968 Sputw3181_3240 Shewanella sp. W3-18-1 BolA family protein YP_964609.1 3696906 R 351745 CDS YP_964610.1 120600036 4661009 complement(3697352..3697966) 1 NC_008750.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: shm:Shewmr7_0969 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 3697966 4661009 Sputw3181_3241 Shewanella sp. W3-18-1 2OG-Fe(II) oxygenase YP_964610.1 3697352 R 351745 CDS YP_964611.1 120600037 4661013 3697969..3699186 1 NC_008750.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_0930 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 3699186 4661013 Sputw3181_3242 Shewanella sp. W3-18-1 rRNA (guanine-N(2)-)-methyltransferase YP_964611.1 3697969 D 351745 CDS YP_964612.1 120600038 4661080 3699399..3702602 1 NC_008750.1 KEGG: son:SO1096 hypothetical protein; hypothetical protein 3702602 4661080 Sputw3181_3243 Shewanella sp. W3-18-1 hypothetical protein YP_964612.1 3699399 D 351745 CDS YP_964613.1 120600039 4661033 complement(3702723..3704021) 1 NC_008750.1 KEGG: shm:Shewmr7_0966 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-acetylhomoserine/O-acetylserine sulfhydrylase 3704021 4661033 Sputw3181_3244 Shewanella sp. W3-18-1 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_964613.1 3702723 R 351745 CDS YP_964614.1 120600040 4661850 complement(3704145..3705584) 1 NC_008750.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: shm:Shewmr7_0965 transcriptional regulator, GntR family; GntR family transcriptional regulator 3705584 4661850 Sputw3181_3245 Shewanella sp. W3-18-1 GntR family transcriptional regulator YP_964614.1 3704145 R 351745 CDS YP_964615.1 120600041 4661759 3705741..3707075 1 NC_008750.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: shm:Shewmr7_0964 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 3707075 4661759 Sputw3181_3246 Shewanella sp. W3-18-1 cytochrome bd ubiquinol oxidase subunit I YP_964615.1 3705741 D 351745 CDS YP_964616.1 120600042 4661729 3707136..3708143 1 NC_008750.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: shm:Shewmr7_0963 cytochrome d ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II 3708143 4661729 Sputw3181_3247 Shewanella sp. W3-18-1 cytochrome d ubiquinol oxidase subunit II YP_964616.1 3707136 D 351745 CDS YP_964617.1 120600043 4661731 3708844..3709251 1 NC_008750.1 KEGG: son:SO1094 hypothetical transcription elongation factor; GreA/GreB family elongation factor 3709251 4661731 Sputw3181_3248 Shewanella sp. W3-18-1 GreA/GreB family elongation factor YP_964617.1 3708844 D 351745 CDS YP_964618.1 120600044 4661675 complement(3709870..3710649) 1 NC_008750.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: shm:Shewmr7_0961 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein 3710649 4661675 Sputw3181_3249 Shewanella sp. W3-18-1 helix-turn-helix domain-containing protein YP_964618.1 3709870 R 351745 CDS YP_964619.1 120600045 4657765 3710832..3711719 1 NC_008750.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1091 hypothetical protein; hypothetical protein 3711719 4657765 Sputw3181_3250 Shewanella sp. W3-18-1 hypothetical protein YP_964619.1 3710832 D 351745 CDS YP_964620.1 120600046 4661531 3711877..3713508 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_0924 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3713508 4661531 Sputw3181_3251 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_964620.1 3711877 D 351745 CDS YP_964621.1 120600047 4660778 3713802..3715190 1 NC_008750.1 PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_0954 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 3715190 4660778 Sputw3181_3252 Shewanella sp. W3-18-1 Na+/H+ antiporter NhaC YP_964621.1 3713802 D 351745 CDS YP_964622.1 120600048 4660727 3715368..3716066 1 NC_008750.1 KEGG: she:Shewmr4_0918 hypothetical protein; hypothetical protein 3716066 4660727 Sputw3181_3253 Shewanella sp. W3-18-1 hypothetical protein YP_964622.1 3715368 D 351745 CDS YP_964623.1 120600049 4660710 3716075..3716803 1 NC_008750.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shm:Shewmr7_0952 pseudouridine synthase, Rsu; pseudouridine synthase 3716803 4660710 Sputw3181_3254 Shewanella sp. W3-18-1 pseudouridine synthase YP_964623.1 3716075 D 351745 CDS YP_964624.1 120600050 4660703 3717688..3718005 1 NC_008750.1 KEGG: sal:Sala_1423 hypothetical protein; hypothetical protein 3718005 4660703 Sputw3181_3255 Shewanella sp. W3-18-1 hypothetical protein YP_964624.1 3717688 D 351745 CDS YP_964625.1 120600051 4659167 complement(3718810..3720966) 1 NC_008750.1 KEGG: shm:Shewmr7_0949 hypothetical protein; hypothetical protein 3720966 4659167 Sputw3181_3257 Shewanella sp. W3-18-1 hypothetical protein YP_964625.1 3718810 R 351745 CDS YP_964626.1 120600052 4660665 complement(3721229..3722416) 1 NC_008750.1 PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: shm:Shewmr7_0948 aromatic amino acid permease; aromatic amino acid permease 3722416 4660665 Sputw3181_3258 Shewanella sp. W3-18-1 aromatic amino acid permease YP_964626.1 3721229 R 351745 CDS YP_964627.1 120600053 4660392 3723120..3723674 1 NC_008750.1 PFAM: protein of unknown function UPF0016; KEGG: she:Shewmr4_3028 protein of unknown function UPF0016; hypothetical protein 3723674 4660392 Sputw3181_3259 Shewanella sp. W3-18-1 hypothetical protein YP_964627.1 3723120 D 351745 CDS YP_964628.1 120600054 4660646 3723876..3726149 1 NC_008750.1 KEGG: son:SO1004 hypothetical protein; hypothetical protein 3726149 4660646 Sputw3181_3260 Shewanella sp. W3-18-1 hypothetical protein YP_964628.1 3723876 D 351745 CDS YP_964629.1 120600055 4660634 3726159..3727901 1 NC_008750.1 KEGG: son:SO1003 hypothetical protein; hypothetical protein 3727901 4660634 Sputw3181_3261 Shewanella sp. W3-18-1 hypothetical protein YP_964629.1 3726159 D 351745 CDS YP_964630.1 120600056 4660371 3728558..3729655 1 NC_008750.1 PFAM: sodium/calcium exchanger membrane region; KEGG: son:SO1001 calcium/proton antiporter; sodium/calcium exchanger membrane region 3729655 4660371 Sputw3181_3262 Shewanella sp. W3-18-1 sodium/calcium exchanger membrane region YP_964630.1 3728558 D 351745 CDS YP_964631.1 120600057 4660910 complement(3729693..3731264) 1 NC_008750.1 PFAM: Rhomboid family protein; KEGG: son:SO1000 rhomboid family protein; rhomboid family protein 3731264 4660910 Sputw3181_3263 Shewanella sp. W3-18-1 rhomboid family protein YP_964631.1 3729693 R 351745 CDS YP_964632.1 120600058 4660563 complement(3731321..3731611) 1 NC_008750.1 KEGG: son:SO0973 hypothetical protein; hypothetical protein 3731611 4660563 Sputw3181_3264 Shewanella sp. W3-18-1 hypothetical protein YP_964632.1 3731321 R 351745 CDS YP_964633.1 120600059 4660542 complement(3731672..3732202) 1 NC_008750.1 PFAM: Methyltransferase type 12; KEGG: son:SO0972 hypothetical protein; type 12 methyltransferase 3732202 4660542 Sputw3181_3265 Shewanella sp. W3-18-1 type 12 methyltransferase YP_964633.1 3731672 R 351745 CDS YP_964634.1 120600060 4660350 complement(3732202..3732612) 1 NC_008750.1 KEGG: she:Shewmr4_0809 hypothetical protein; hypothetical protein 3732612 4660350 Sputw3181_3266 Shewanella sp. W3-18-1 hypothetical protein YP_964634.1 3732202 R 351745 CDS YP_964635.1 120600061 4660334 3733119..3734912 1 NC_008750.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0970 fumarate reductase flavoprotein subunit precursor; flavocytochrome c 3734912 4660334 Sputw3181_3267 Shewanella sp. W3-18-1 flavocytochrome c YP_964635.1 3733119 D 351745 CDS YP_964636.1 120600062 4660324 3735168..3736157 1 NC_008750.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: shm:Shewmr7_3216 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein; D-isomer specific 2-hydroxyacid dehydrogenase 3736157 4660324 Sputw3181_3268 Shewanella sp. W3-18-1 D-isomer specific 2-hydroxyacid dehydrogenase YP_964636.1 3735168 D 351745 CDS YP_964637.1 120600063 4660455 3736226..3736963 1 NC_008750.1 PFAM: dienelactone hydrolase; KEGG: she:Shewmr4_0806 dienelactone hydrolase; dienelactone hydrolase 3736963 4660455 Sputw3181_3269 Shewanella sp. W3-18-1 dienelactone hydrolase YP_964637.1 3736226 D 351745 CDS YP_964638.1 120600064 4660292 3737015..3737302 1 NC_008750.1 hypothetical protein 3737302 4660292 Sputw3181_3270 Shewanella sp. W3-18-1 hypothetical protein YP_964638.1 3737015 D 351745 CDS YP_964639.1 120600065 4660293 complement(3737441..3737902) 1 NC_008750.1 hypothetical protein 3737902 4660293 Sputw3181_3271 Shewanella sp. W3-18-1 hypothetical protein YP_964639.1 3737441 R 351745 CDS YP_964640.1 120600066 4660294 complement(3737998..3738441) 1 NC_008750.1 KEGG: psb:Psyr_4989 hypothetical protein; hypothetical protein 3738441 4660294 Sputw3181_3272 Shewanella sp. W3-18-1 hypothetical protein YP_964640.1 3737998 R 351745 CDS YP_964641.1 120600067 4660295 complement(3738458..3739003) 1 NC_008750.1 KEGG: shm:Shewmr7_3219 hypothetical protein; hypothetical protein 3739003 4660295 Sputw3181_3273 Shewanella sp. W3-18-1 hypothetical protein YP_964641.1 3738458 R 351745 CDS YP_964642.1 120600068 4660299 3739107..3739850 1 NC_008750.1 PFAM: Spermine synthase; KEGG: shm:Shewmr7_3220 spermine synthase; spermine synthase 3739850 4660299 Sputw3181_3274 Shewanella sp. W3-18-1 spermine synthase YP_964642.1 3739107 D 351745 CDS YP_964643.1 120600069 4660300 3739940..3741496 1 NC_008750.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: shm:Shewmr7_3221 leucyl aminopeptidase; leucyl aminopeptidase 3741496 4660300 Sputw3181_3275 Shewanella sp. W3-18-1 leucyl aminopeptidase YP_964643.1 3739940 D 351745 CDS YP_964644.1 120600070 4660301 3741851..3742420 1 NC_008750.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO0958 alkyl hydroperoxide reductase, C subunit; alkyl hydroperoxide reductase 3742420 4660301 Sputw3181_3276 Shewanella sp. W3-18-1 alkyl hydroperoxide reductase YP_964644.1 3741851 D 351745 CDS YP_964645.1 120600071 4660303 3742531..3744102 1 NC_008750.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutaredoxin; KEGG: son:SO0956 alkyl hydroperoxide reductase, F subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3744102 4660303 Sputw3181_3277 Shewanella sp. W3-18-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_964645.1 3742531 D 351745 CDS YP_964646.1 120600072 4660307 complement(3744174..3744353) 1 NC_008750.1 KEGG: son:SO0955 hypothetical protein; hypothetical protein 3744353 4660307 Sputw3181_3278 Shewanella sp. W3-18-1 hypothetical protein YP_964646.1 3744174 R 351745 CDS YP_964647.1 120600073 4660308 complement(3744413..3744832) 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0954 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3744832 4660308 Sputw3181_3279 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_964647.1 3744413 R 351745 CDS YP_964648.1 120600074 4660309 complement(3744868..3745197) 1 NC_008750.1 KEGG: son:SO0953 hypothetical protein; hypothetical protein 3745197 4660309 Sputw3181_3280 Shewanella sp. W3-18-1 hypothetical protein YP_964648.1 3744868 R 351745 CDS YP_964649.1 120600075 4660082 complement(3745221..3746975) 1 NC_008750.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: shm:Shewmr7_3226 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 3746975 4660082 Sputw3181_3281 Shewanella sp. W3-18-1 single-stranded-DNA-specific exonuclease RecJ YP_964649.1 3745221 R 351745 CDS YP_964650.1 120600076 4660059 complement(3747039..3747764) 1 NC_008750.1 KEGG: shm:Shewmr7_3227 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 3747764 4660059 Sputw3181_3282 Shewanella sp. W3-18-1 thiol:disulfide interchange protein DsbC YP_964650.1 3747039 R 351745 CDS YP_964651.1 120600077 4660031 complement(3747898..3748800) 1 NC_008750.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: shm:Shewmr7_3228 tyrosine recombinase XerD; tyrosine recombinase XerD 3748800 4660031 Sputw3181_3283 Shewanella sp. W3-18-1 tyrosine recombinase XerD YP_964651.1 3747898 R 351745 CDS YP_964652.1 120600078 4660006 complement(3748890..3750293) 1 NC_008750.1 PFAM: branched-chain amino acid transport system II carrier protein; KEGG: she:Shewmr4_0794 branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 3750293 4660006 Sputw3181_3284 Shewanella sp. W3-18-1 branched-chain amino acid transport system II carrier protein YP_964652.1 3748890 R 351745 CDS YP_964653.1 120600079 4660003 3750825..3751541 1 NC_008750.1 PFAM: O-methyltransferase, family 3; Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_0793 methyltransferase small; type 12 methyltransferase 3751541 4660003 Sputw3181_3285 Shewanella sp. W3-18-1 type 12 methyltransferase YP_964653.1 3750825 D 351745 CDS YP_964654.1 120600080 4659974 3751655..3752914 1 NC_008750.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 3752914 4659974 Sputw3181_3286 Shewanella sp. W3-18-1 ATP-dependent RNA helicase SrmB YP_964654.1 3751655 D 351745 CDS YP_964655.1 120600081 4661638 3753280..3754491 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_3234 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3754491 4661638 Sputw3181_3287 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_964655.1 3753280 D 351745 CDS YP_964656.1 120600082 4659803 3754491..3757682 1 NC_008750.1 PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3235 acriflavin resistance protein; acriflavin resistance protein 3757682 4659803 Sputw3181_3288 Shewanella sp. W3-18-1 acriflavin resistance protein YP_964656.1 3754491 D 351745 CDS YP_964657.1 120600083 4659958 3757858..3758565 1 NC_008750.1 PFAM: Radical SAM domain protein; KEGG: son:SO0944 hypothetical protein; radical SAM domain-containing protein 3758565 4659958 Sputw3181_3289 Shewanella sp. W3-18-1 radical SAM domain-containing protein YP_964657.1 3757858 D 351745 CDS YP_964658.1 120600084 4659786 3758734..3760971 1 NC_008750.1 KEGG: she:Shewmr4_0786 putative PAS/PAC sensor protein; putative PAS/PAC sensor protein 3760971 4659786 Sputw3181_3290 Shewanella sp. W3-18-1 putative PAS/PAC sensor protein YP_964658.1 3758734 D 351745 CDS YP_964659.1 120600085 4659743 complement(3760952..3762355) 1 NC_008750.1 KEGG: shm:Shewmr7_3238 hypothetical protein; hypothetical protein 3762355 4659743 Sputw3181_3291 Shewanella sp. W3-18-1 hypothetical protein YP_964659.1 3760952 R 351745 CDS YP_964660.1 120600086 4659694 complement(3762451..3762981) 1 NC_008750.1 KEGG: she:Shewmr4_0784 hypothetical protein; hypothetical protein 3762981 4659694 Sputw3181_3292 Shewanella sp. W3-18-1 hypothetical protein YP_964660.1 3762451 R 351745 CDS YP_964661.1 120600087 4659695 complement(3762974..3763717) 1 NC_008750.1 PFAM: transcriptional regulator domain protein; KEGG: son:SO0940 transcriptional regulator-related protein; transcriptional regulator CadC 3763717 4659695 Sputw3181_3293 Shewanella sp. W3-18-1 transcriptional regulator CadC YP_964661.1 3762974 R 351745 CDS YP_964662.1 120600088 4659696 3764164..3764985 1 NC_008750.1 KEGG: shm:Shewmr7_3241 cytochrome c, putative; cytochrome c 3764985 4659696 Sputw3181_3294 Shewanella sp. W3-18-1 cytochrome c YP_964662.1 3764164 D 351745 CDS YP_964663.1 120600089 4659697 3764996..3765526 1 NC_008750.1 KEGG: she:Shewmr4_0781 hypothetical protein; hypothetical protein 3765526 4659697 Sputw3181_3295 Shewanella sp. W3-18-1 hypothetical protein YP_964663.1 3764996 D 351745 CDS YP_964664.1 120600090 4659698 complement(3765614..3767050) 1 NC_008750.1 KEGG: she:Shewmr4_0778 Na+/H+ antiporter; Na+/H+ antiporter 3767050 4659698 Sputw3181_3296 Shewanella sp. W3-18-1 Na+/H+ antiporter YP_964664.1 3765614 R 351745 CDS YP_964665.1 120600091 4659699 complement(3767264..3768001) 1 NC_008750.1 PFAM: protein of unknown function DUF481; KEGG: shm:Shewmr7_3246 protein of unknown function DUF481; hypothetical protein 3768001 4659699 Sputw3181_3297 Shewanella sp. W3-18-1 hypothetical protein YP_964665.1 3767264 R 351745 CDS YP_964666.1 120600092 4659700 complement(3768198..3769265) 1 NC_008750.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 3769265 4659700 Sputw3181_3298 Shewanella sp. W3-18-1 fructose-1,6-bisphosphate aldolase YP_964666.1 3768198 R 351745 CDS YP_964667.1 120600093 4661007 complement(3769479..3770654) 1 NC_008750.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3770654 pgk 4661007 pgk Shewanella sp. W3-18-1 phosphoglycerate kinase YP_964667.1 3769479 R 351745 CDS YP_964668.1 120600094 4659701 complement(3770782..3771798) 1 NC_008750.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 3771798 4659701 Sputw3181_3300 Shewanella sp. W3-18-1 erythrose 4-phosphate dehydrogenase YP_964668.1 3770782 R 351745 CDS YP_964669.1 120600095 4659702 complement(3771915..3773909) 1 NC_008750.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 3773909 4659702 Sputw3181_3301 Shewanella sp. W3-18-1 transketolase YP_964669.1 3771915 R 351745 CDS YP_964670.1 120600096 4659704 3774388..3775539 1 NC_008750.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3775539 4659704 Sputw3181_3302 Shewanella sp. W3-18-1 S-adenosylmethionine synthetase YP_964670.1 3774388 D 351745 CDS YP_964671.1 120600097 4659703 3775673..3776158 1 NC_008750.1 KEGG: shm:Shewmr7_3252 hypothetical protein; hypothetical protein 3776158 4659703 Sputw3181_3303 Shewanella sp. W3-18-1 hypothetical protein YP_964671.1 3775673 D 351745 CDS YP_964672.1 120600098 4659705 complement(3776769..3778271) 1 NC_008750.1 PFAM: transposase IS66; KEGG: pha:PSHAa0410 transposase; transposase IS66 3778271 4659705 Sputw3181_3304 Shewanella sp. W3-18-1 transposase IS66 YP_964672.1 3776769 R 351745 CDS YP_964673.1 120600099 4659706 complement(3778352..3778702) 1 NC_008750.1 PFAM: IS66 Orf2 family protein; KEGG: pha:PSHAa0409 hypothetical protein; IS66 Orf2 family protein 3778702 4659706 Sputw3181_3305 Shewanella sp. W3-18-1 IS66 Orf2 family protein YP_964673.1 3778352 R 351745 CDS YP_964674.1 120600100 4659707 complement(3778699..3779055) 1 NC_008750.1 hypothetical protein 3779055 4659707 Sputw3181_3306 Shewanella sp. W3-18-1 hypothetical protein YP_964674.1 3778699 R 351745 CDS YP_964675.1 120600101 4659708 3780671..3781705 1 NC_008750.1 PFAM: protein of unknown function DUF1568; KEGG: shm:Shewmr7_1178 protein of unknown function DUF1568; hypothetical protein 3781705 4659708 Sputw3181_3307 Shewanella sp. W3-18-1 hypothetical protein YP_964675.1 3780671 D 351745 CDS YP_964676.1 120600102 4659709 complement(3781860..3782210) 1 NC_008750.1 KEGG: shm:Shewmr7_3253 hypothetical protein; hypothetical protein 3782210 4659709 Sputw3181_3308 Shewanella sp. W3-18-1 hypothetical protein YP_964676.1 3781860 R 351745 CDS YP_964677.1 120600103 4659710 complement(3782277..3782849) 1 NC_008750.1 KEGG: shm:Shewmr7_3255 acetyltransferase, GNAT family; acetyltransferase 3782849 4659710 Sputw3181_3309 Shewanella sp. W3-18-1 acetyltransferase YP_964677.1 3782277 R 351745 CDS YP_964678.1 120600104 4659711 complement(3782934..3783158) 1 NC_008750.1 KEGG: she:Shewmr4_0766 hypothetical protein; hypothetical protein 3783158 4659711 Sputw3181_3310 Shewanella sp. W3-18-1 hypothetical protein YP_964678.1 3782934 R 351745 CDS YP_964679.1 120600105 4659712 3783230..3783646 1 NC_008750.1 PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: shm:Shewmr7_3258 protein of unknown function DUF306, MetA and HslJ; hypothetical protein 3783646 4659712 Sputw3181_3311 Shewanella sp. W3-18-1 hypothetical protein YP_964679.1 3783230 D 351745 CDS YP_964680.1 120600106 4659713 complement(3783746..3785077) 1 NC_008750.1 PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_3259 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 3785077 4659713 Sputw3181_3312 Shewanella sp. W3-18-1 sodium:dicarboxylate symporter YP_964680.1 3783746 R 351745 CDS YP_964681.1 120600107 4659716 3785417..3785860 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_3261 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3785860 4659716 Sputw3181_3313 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_964681.1 3785417 D 351745 CDS YP_964682.1 120600108 4659718 complement(3785954..3787249) 1 NC_008750.1 PFAM: aromatic amino acid permease; KEGG: son:SO0919 serine transporter, putative; aromatic amino acid permease 3787249 4659718 Sputw3181_3314 Shewanella sp. W3-18-1 aromatic amino acid permease YP_964682.1 3785954 R 351745 CDS YP_964683.1 120600109 4659719 complement(3787716..3790280) 1 NC_008750.1 PFAM: peptidase S45, penicillin amidase; KEGG: shm:Shewmr7_3263 peptidase S45, penicillin amidase; peptidase S45, penicillin amidase 3790280 4659719 Sputw3181_3315 Shewanella sp. W3-18-1 peptidase S45, penicillin amidase YP_964683.1 3787716 R 351745 CDS YP_964684.1 120600110 4659720 3790539..3791093 1 NC_008750.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 3791093 4659720 Sputw3181_3316 Shewanella sp. W3-18-1 NTPase YP_964684.1 3790539 D 351745 CDS YP_964685.1 120600111 4659721 3791216..3792175 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; KEGG: shm:Shewmr7_3265 transcriptional regulator, MarR family with acetyltransferase activity; MarR family transcriptional regulator 3792175 4659721 Sputw3181_3317 Shewanella sp. W3-18-1 MarR family transcriptional regulator YP_964685.1 3791216 D 351745 CDS YP_964686.1 120600112 4659722 3792510..3793790 1 NC_008750.1 SMART: AAA ATPase; KEGG: rfr:Rfer_3382 hypothetical protein; ATPase AAA 3793790 4659722 Sputw3181_3318 Shewanella sp. W3-18-1 ATPase AAA YP_964686.1 3792510 D 351745 CDS YP_964687.1 120600113 4659723 complement(3794003..3795214) 1 NC_008750.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 3795214 4659723 Sputw3181_3319 Shewanella sp. W3-18-1 Na(+)-translocating NADH-quinone reductase subunit F YP_964687.1 3794003 R 351745 CDS YP_964688.1 120600114 4659726 complement(3795298..3795906) 1 NC_008750.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 3795906 4659726 Sputw3181_3320 Shewanella sp. W3-18-1 Na(+)-translocating NADH-quinone reductase subunit E YP_964688.1 3795298 R 351745 CDS YP_964689.1 120600115 4659725 complement(3795916..3796536) 1 NC_008750.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 3796536 4659725 Sputw3181_3321 Shewanella sp. W3-18-1 Na(+)-translocating NADH-quinone reductase subunit D YP_964689.1 3795916 R 351745 CDS YP_964690.1 120600116 4659724 complement(3796533..3797327) 1 NC_008750.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 3797327 4659724 Sputw3181_3322 Shewanella sp. W3-18-1 Na(+)-translocating NADH-quinone reductase subunit C YP_964690.1 3796533 R 351745 CDS YP_964691.1 120600117 4659727 complement(3797317..3798549) 1 NC_008750.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 3798549 4659727 Sputw3181_3323 Shewanella sp. W3-18-1 Na(+)-translocating NADH-quinone reductase subunit B YP_964691.1 3797317 R 351745 CDS YP_964692.1 120600118 4659728 complement(3798549..3799919) 1 NC_008750.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 3799919 4659728 Sputw3181_3324 Shewanella sp. W3-18-1 Na(+)-translocating NADH-quinone reductase subunit A YP_964692.1 3798549 R 351745 CDS YP_964693.1 120600119 4659729 3800374..3801414 1 NC_008750.1 PFAM: aldo/keto reductase; KEGG: shm:Shewmr7_3273 aldo/keto reductase; aldo/keto reductase 3801414 4659729 Sputw3181_3325 Shewanella sp. W3-18-1 aldo/keto reductase YP_964693.1 3800374 D 351745 CDS YP_964694.1 120600120 4659730 3801648..3802421 1 NC_008750.1 PFAM: MltA-interacting MipA family protein; KEGG: sfr:Sfri_3058 MltA-interacting MipA family protein; MltA-interacting MipA family protein 3802421 4659730 Sputw3181_3326 Shewanella sp. W3-18-1 MltA-interacting MipA family protein YP_964694.1 3801648 D 351745 CDS YP_964695.1 120600121 4659731 3802443..3802901 1 NC_008750.1 KEGG: sfr:Sfri_3059 hypothetical protein; hypothetical protein 3802901 4659731 Sputw3181_3327 Shewanella sp. W3-18-1 hypothetical protein YP_964695.1 3802443 D 351745 CDS YP_964696.1 120600122 4659732 complement(3803017..3804312) 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sdn:Sden_0558 ATP-binding region, ATPase-like protein; integral membrane sensor signal transduction histidine kinase 3804312 4659732 Sputw3181_3328 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_964696.1 3803017 R 351745 CDS YP_964697.1 120600123 4659734 complement(3804318..3804590) 1 NC_008750.1 PFAM: transcriptional regulator domain protein; KEGG: sdn:Sden_0557 response regulator receiver; response regulator receiver protein 3804590 4659734 Sputw3181_3329 Shewanella sp. W3-18-1 response regulator receiver protein YP_964697.1 3804318 R 351745 CDS YP_964698.1 120600124 4659735 complement(3804596..3805291) 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sdn:Sden_0557 response regulator receiver; two component transcriptional regulator 3805291 4659735 Sputw3181_3330 Shewanella sp. W3-18-1 two component transcriptional regulator YP_964698.1 3804596 R 351745 CDS YP_964699.1 120600125 4659737 complement(3805293..3805682) 1 NC_008750.1 KEGG: sfr:Sfri_3063 hypothetical protein; hypothetical protein 3805682 4659737 Sputw3181_3331 Shewanella sp. W3-18-1 hypothetical protein YP_964699.1 3805293 R 351745 CDS YP_964700.1 120600126 4659738 complement(3805692..3806537) 1 NC_008750.1 PFAM: MltA-interacting MipA family protein; KEGG: sfr:Sfri_3064 MltA-interacting MipA family protein; MltA-interacting MipA family protein 3806537 4659738 Sputw3181_3332 Shewanella sp. W3-18-1 MltA-interacting MipA family protein YP_964700.1 3805692 R 351745 CDS YP_964701.1 120600127 4659739 3807004..3808317 1 NC_008750.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aminotransferase, class I and II; KEGG: son:SO3789 aminotransferase, class V; SufS subfamily cysteine desulfurase 3808317 4659739 Sputw3181_3333 Shewanella sp. W3-18-1 SufS subfamily cysteine desulfurase YP_964701.1 3807004 D 351745 CDS YP_964702.1 120600128 4659740 3808392..3808838 1 NC_008750.1 PFAM: Fe-S metabolism associated SufE; KEGG: shm:Shewmr7_0835 Fe-S metabolism associated SufE; Fe-S metabolism associated SufE 3808838 4659740 Sputw3181_3334 Shewanella sp. W3-18-1 Fe-S metabolism associated SufE YP_964702.1 3808392 D 351745 CDS YP_964703.1 120600129 4659741 3808957..3810123 1 NC_008750.1 PFAM: peptidase M19, renal dipeptidase; KEGG: shm:Shewmr7_0834 twin-arginine translocation pathway signal; peptidase M19 3810123 4659741 Sputw3181_3335 Shewanella sp. W3-18-1 peptidase M19 YP_964703.1 3808957 D 351745 CDS YP_964704.1 120600130 4659742 complement(3810133..3810450) 1 NC_008750.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: shm:Shewmr7_0832 cupin 2, conserved barrel domain protein; cupin 3810450 4659742 Sputw3181_3336 Shewanella sp. W3-18-1 cupin YP_964704.1 3810133 R 351745 CDS YP_964705.1 120600131 4659745 3810602..3812842 1 NC_008750.1 KEGG: shm:Shewmr7_0831 hypothetical protein; hypothetical protein 3812842 4659745 Sputw3181_3337 Shewanella sp. W3-18-1 hypothetical protein YP_964705.1 3810602 D 351745 CDS YP_964706.1 120600132 4659746 complement(3812911..3814827) 1 NC_008750.1 PFAM: peptidase U32; KEGG: shm:Shewmr7_0828 peptidase U32; peptidase U32 3814827 4659746 Sputw3181_3338 Shewanella sp. W3-18-1 peptidase U32 YP_964706.1 3812911 R 351745 CDS YP_964707.1 120600133 4659747 3815031..3815711 1 NC_008750.1 PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_0827 pseudouridylate synthase; pseudouridylate synthase 3815711 4659747 Sputw3181_3339 Shewanella sp. W3-18-1 pseudouridylate synthase YP_964707.1 3815031 D 351745 CDS YP_964708.1 120600134 4659748 3815774..3816268 1 NC_008750.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 3816268 4659748 Sputw3181_3340 Shewanella sp. W3-18-1 DNA-binding transcriptional regulator AsnC YP_964708.1 3815774 D 351745 CDS YP_964709.1 120600135 4659749 3816468..3820346 1 NC_008750.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO1915 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 3820346 4659749 Sputw3181_3341 Shewanella sp. W3-18-1 peptidase S8/S53 subtilisin kexin sedolisin YP_964709.1 3816468 D 351745 CDS YP_964710.1 120600136 4659750 complement(3820415..3821185) 1 NC_008750.1 PFAM: ABC-2 type transporter; KEGG: she:Shewmr4_3143 ABC-2 type transporter; ABC transporter 3821185 4659750 Sputw3181_3342 Shewanella sp. W3-18-1 ABC transporter YP_964710.1 3820415 R 351745 CDS YP_964711.1 120600137 4659751 complement(3821182..3822120) 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3802 ABC transporter, ATP-binding protein; ABC transporter-like protein 3822120 4659751 Sputw3181_3343 Shewanella sp. W3-18-1 ABC transporter-like protein YP_964711.1 3821182 R 351745 CDS YP_964712.1 120600138 4659752 complement(3822258..3822788) 1 NC_008750.1 KEGG: shm:Shewmr7_0822 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 3822788 4659752 Sputw3181_3344 Shewanella sp. W3-18-1 hypoxanthine phosphoribosyltransferase YP_964712.1 3822258 R 351745 CDS YP_964713.1 120600139 4659753 complement(3822796..3823455) 1 NC_008750.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: shm:Shewmr7_0821 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; aromatic acid decarboxylase 3823455 4659753 Sputw3181_3345 Shewanella sp. W3-18-1 aromatic acid decarboxylase YP_964713.1 3822796 R 351745 CDS YP_964714.1 120600140 4659754 complement(3823457..3824851) 1 NC_008750.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: shm:Shewmr7_0820 UDP-N-acetylmuramate; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 3824851 4659754 Sputw3181_3346 Shewanella sp. W3-18-1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_964714.1 3823457 R 351745 CDS YP_964715.1 120600141 4659874 complement(3825020..3825655) 1 NC_008750.1 KEGG: she:Shewmr4_3148 hypothetical protein; hypothetical protein 3825655 4659874 Sputw3181_3347 Shewanella sp. W3-18-1 hypothetical protein YP_964715.1 3825020 R 351745 CDS YP_964716.1 120600142 4659757 complement(3825804..3826667) 1 NC_008750.1 KEGG: she:Shewmr4_3149 sterol desaturase family protein; sterol desaturase family protein 3826667 4659757 Sputw3181_3348 Shewanella sp. W3-18-1 sterol desaturase family protein YP_964716.1 3825804 R 351745 CDS YP_964717.1 120600143 4659758 complement(3826802..3827833) 1 NC_008750.1 KEGG: she:Shewmr4_3150 hypothetical protein; hypothetical protein 3827833 4659758 Sputw3181_3349 Shewanella sp. W3-18-1 hypothetical protein YP_964717.1 3826802 R 351745 CDS YP_964718.1 120600144 4659760 complement(3828055..3828423) 1 NC_008750.1 KEGG: shm:Shewmr7_0816 OmpA domain protein transmembrane region-containing protein; OmpA domain-containing protein 3828423 4659760 Sputw3181_3350 Shewanella sp. W3-18-1 OmpA domain-containing protein YP_964718.1 3828055 R 351745 CDS YP_964719.1 120600145 4659761 3829047..3829613 1 NC_008750.1 PFAM: uncharacterized lipoprotein; KEGG: shm:Shewmr7_0815 uncharacterized lipoprotein; lipoprotein 3829613 4659761 Sputw3181_3351 Shewanella sp. W3-18-1 lipoprotein YP_964719.1 3829047 D 351745 CDS YP_964720.1 120600146 4659762 3829644..3830228 1 NC_008750.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: shm:Shewmr7_0814 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3830228 4659762 Sputw3181_3352 Shewanella sp. W3-18-1 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_964720.1 3829644 D 351745 CDS YP_964721.1 120600147 4659765 3830296..3830616 1 NC_008750.1 KEGG: shm:Shewmr7_0813 hypothetical protein; hypothetical protein 3830616 4659765 Sputw3181_3353 Shewanella sp. W3-18-1 hypothetical protein YP_964721.1 3830296 D 351745 CDS YP_964722.1 120600148 4659766 3830809..3832224 1 NC_008750.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3814 AmpG protein, putative; major facilitator superfamily transporter 3832224 4659766 Sputw3181_3354 Shewanella sp. W3-18-1 major facilitator superfamily transporter YP_964722.1 3830809 D 351745 CDS YP_964723.1 120600149 4659767 complement(3832332..3832817) 1 NC_008750.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 3832817 4659767 Sputw3181_3355 Shewanella sp. W3-18-1 putative nucleotide-binding protein YP_964723.1 3832332 R 351745 CDS YP_964724.1 120600150 4659768 3832981..3833340 1 NC_008750.1 PFAM: VanZ family protein; KEGG: she:Shewmr4_3157 VanZ family protein; VanZ family protein 3833340 4659768 Sputw3181_3356 Shewanella sp. W3-18-1 VanZ family protein YP_964724.1 3832981 D 351745 CDS YP_964725.1 120600151 4659769 3833385..3834347 1 NC_008750.1 KEGG: she:Shewmr4_3158 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 3834347 4659769 Sputw3181_3357 Shewanella sp. W3-18-1 2-dehydropantoate 2-reductase YP_964725.1 3833385 D 351745 CDS YP_964726.1 120600152 4659773 3834459..3834869 1 NC_008750.1 PFAM: nitrogen regulatory protein P-II; KEGG: shm:Shewmr7_0808 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3834869 4659773 Sputw3181_3358 Shewanella sp. W3-18-1 nitrogen regulatory protein P-II YP_964726.1 3834459 D 351745 CDS YP_964727.1 120600153 4659775 complement(3834904..3836448) 1 NC_008750.1 PFAM: EAL domain protein; KEGG: son:SO3821 rtn protein; diguanylate phosphodiesterase 3836448 4659775 Sputw3181_3359 Shewanella sp. W3-18-1 diguanylate phosphodiesterase YP_964727.1 3834904 R 351745 CDS YP_964728.1 120600154 4659776 complement(3836564..3837790) 1 NC_008750.1 PFAM: protein of unknown function DUF819; KEGG: sfr:Sfri_2589 protein of unknown function DUF819; hypothetical protein 3837790 4659776 Sputw3181_3360 Shewanella sp. W3-18-1 hypothetical protein YP_964728.1 3836564 R 351745 CDS YP_964729.1 120600155 4659854 complement(3837813..3838709) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_2588 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 3838709 4659854 Sputw3181_3361 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_964729.1 3837813 R 351745 CDS YP_964730.1 120600156 4659440 complement(3838833..3839861) 1 NC_008750.1 KEGG: she:Shewmr4_3227 outer membrane porin, putative; outer membrane porin 3839861 4659440 Sputw3181_3362 Shewanella sp. W3-18-1 outer membrane porin YP_964730.1 3838833 R 351745 CDS YP_964731.1 120600157 4661204 complement(3841073..3842446) 1 NC_008750.1 PFAM: transposase Tn5, dimerisation domain protein; KEGG: ppr:PBPRB0910 hypothetical transposase; transposase Tn5 dimerisation subunit 3842446 4661204 Sputw3181_3364 Shewanella sp. W3-18-1 transposase Tn5 dimerisation subunit YP_964731.1 3841073 R 351745 CDS YP_964732.1 120600158 4659430 complement(3843572..3844420) 1 NC_008750.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 3844420 4659430 Sputw3181_3365 Shewanella sp. W3-18-1 2-dehydro-3-deoxyphosphooctonate aldolase YP_964732.1 3843572 R 351745 CDS YP_964733.1 120600159 4659410 complement(3844476..3845723) 1 NC_008750.1 PFAM: protein of unknown function DUF819; KEGG: shm:Shewmr7_0802 protein of unknown function DUF819; hypothetical protein 3845723 4659410 Sputw3181_3366 Shewanella sp. W3-18-1 hypothetical protein YP_964733.1 3844476 R 351745 CDS YP_964734.1 120600160 4659127 complement(3845886..3846674) 1 NC_008750.1 KEGG: shm:Shewmr7_0801 hypothetical protein; hypothetical protein 3846674 4659127 Sputw3181_3367 Shewanella sp. W3-18-1 hypothetical protein YP_964734.1 3845886 R 351745 CDS YP_964735.1 120600161 4659126 complement(3846674..3847069) 1 NC_008750.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: shm:Shewmr7_0800 invasion gene expression up-regulator, SirB; invasion gene expression up-regulator, SirB 3847069 4659126 Sputw3181_3368 Shewanella sp. W3-18-1 invasion gene expression up-regulator, SirB YP_964735.1 3846674 R 351745 CDS YP_964736.1 120600162 4660964 3847183..3847389 1 NC_008750.1 KEGG: shm:Shewmr7_0799 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3847389 4660964 Sputw3181_3369 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_964736.1 3847183 D 351745 CDS YP_964737.1 120600163 4658869 complement(3847875..3848204) 1 NC_008750.1 hypothetical protein 3848204 4658869 Sputw3181_3371 Shewanella sp. W3-18-1 hypothetical protein YP_964737.1 3847875 R 351745 CDS YP_964738.1 120600164 4659318 complement(3848262..3848654) 1 NC_008750.1 KEGG: cgb:cg1190 hypothetical protein; hypothetical protein 3848654 4659318 Sputw3181_3372 Shewanella sp. W3-18-1 hypothetical protein YP_964738.1 3848262 R 351745 CDS YP_964739.1 120600165 4659258 complement(3849097..3849945) 1 NC_008750.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: she:Shewmr4_3168 modification methylase, HemK family; HemK family modification methylase 3849945 4659258 Sputw3181_3373 Shewanella sp. W3-18-1 HemK family modification methylase YP_964739.1 3849097 R 351745 CDS YP_964740.1 120600166 4659235 complement(3849948..3851039) 1 NC_008750.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 3851039 prfA 4659235 prfA Shewanella sp. W3-18-1 peptide chain release factor 1 YP_964740.1 3849948 R 351745 CDS YP_964741.1 120600167 4659229 complement(3851054..3852304) 1 NC_008750.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 3852304 hemA 4659229 hemA Shewanella sp. W3-18-1 glutamyl-tRNA reductase YP_964741.1 3851054 R 351745 CDS YP_964742.1 120600168 4659193 3852557..3853201 1 NC_008750.1 PFAM: outer membrane lipoprotein LolB; KEGG: son:SO3835 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 3853201 4659193 Sputw3181_3376 Shewanella sp. W3-18-1 outer membrane lipoprotein LolB YP_964742.1 3852557 D 351745 CDS YP_964743.1 120600169 4659048 3853203..3854057 1 NC_008750.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3854057 ipk 4659048 ipk Shewanella sp. W3-18-1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_964743.1 3853203 D 351745 CDS YP_964744.1 120600170 4659049 3854168..3855115 1 NC_008750.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3855115 4659049 Sputw3181_3378 Shewanella sp. W3-18-1 ribose-phosphate pyrophosphokinase YP_964744.1 3854168 D 351745 CDS YP_964745.1 120600171 4659051 complement(3855178..3857040) 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_0792 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3857040 4659051 Sputw3181_3379 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_964745.1 3855178 R 351745 CDS YP_964746.1 120600172 4659052 3857455..3857988 1 NC_008750.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO3840 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3857988 4659052 Sputw3181_3380 Shewanella sp. W3-18-1 ECF subfamily RNA polymerase sigma-24 factor YP_964746.1 3857455 D 351745 CDS YP_964747.1 120600173 4659054 3857988..3858563 1 NC_008750.1 KEGG: she:Shewmr4_3176 hypothetical protein; hypothetical protein 3858563 4659054 Sputw3181_3381 Shewanella sp. W3-18-1 hypothetical protein YP_964747.1 3857988 D 351745 CDS YP_964748.1 120600174 4659055 3858560..3859516 1 NC_008750.1 KEGG: she:Shewmr4_3177 hypothetical protein; hypothetical protein 3859516 4659055 Sputw3181_3382 Shewanella sp. W3-18-1 hypothetical protein YP_964748.1 3858560 D 351745 CDS YP_964749.1 120600175 4658871 complement(3859591..3860280) 1 NC_008750.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shm:Shewmr7_0788 pseudouridine synthase, Rsu; pseudouridine synthase 3860280 4658871 Sputw3181_3383 Shewanella sp. W3-18-1 pseudouridine synthase YP_964749.1 3859591 R 351745 CDS YP_964750.1 120600176 4658859 3860673..3862757 1 NC_008750.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: she:Shewmr4_3179 endothelin-converting enzyme 1; endothelin-converting protein 1 3862757 4658859 Sputw3181_3384 Shewanella sp. W3-18-1 endothelin-converting protein 1 YP_964750.1 3860673 D 351745 CDS YP_964751.1 120600177 4658610 3862977..3863762 1 NC_008750.1 KEGG: she:Shewmr4_3180 hypothetical protein; hypothetical protein 3863762 4658610 Sputw3181_3385 Shewanella sp. W3-18-1 hypothetical protein YP_964751.1 3862977 D 351745 CDS YP_964752.1 120600178 4658549 3863922..3864329 1 NC_008750.1 KEGG: she:Shewmr4_3181 hypothetical protein; hypothetical protein 3864329 4658549 Sputw3181_3386 Shewanella sp. W3-18-1 hypothetical protein YP_964752.1 3863922 D 351745 CDS YP_964753.1 120600179 4658772 3864360..3864860 1 NC_008750.1 KEGG: shm:Shewmr7_0784 hypothetical protein; hypothetical protein 3864860 4658772 Sputw3181_3387 Shewanella sp. W3-18-1 hypothetical protein YP_964753.1 3864360 D 351745 CDS YP_964754.1 120600180 4658582 3865367..3865897 1 NC_008750.1 PFAM: membrane-flanked domain; KEGG: son:SO3849 hypothetical protein; membrane-flanked domain-containing protein 3865897 4658582 Sputw3181_3388 Shewanella sp. W3-18-1 membrane-flanked domain-containing protein YP_964754.1 3865367 D 351745 CDS YP_964755.1 120600181 4658575 3865956..3867230 1 NC_008750.1 KEGG: she:Shewmr4_3186 putative manganese transporter; putative manganese transporter 3867230 4658575 Sputw3181_3389 Shewanella sp. W3-18-1 putative manganese transporter YP_964755.1 3865956 D 351745 CDS YP_964756.1 120600182 4658759 3867374..3867844 1 NC_008750.1 PFAM: protein of unknown function DUF1456; KEGG: shm:Shewmr7_0779 protein of unknown function DUF1456; hypothetical protein 3867844 4658759 Sputw3181_3390 Shewanella sp. W3-18-1 hypothetical protein YP_964756.1 3867374 D 351745 CDS YP_964757.1 120600183 4658562 3868112..3869800 1 NC_008750.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 3869800 4658562 Sputw3181_3391 Shewanella sp. W3-18-1 malate dehydrogenase YP_964757.1 3868112 D 351745 CDS YP_964758.1 120600184 4660936 complement(3870000..3870434) 1 NC_008750.1 KEGG: son:SO3856 hypothetical protein; hypothetical protein 3870434 4660936 Sputw3181_3392 Shewanella sp. W3-18-1 hypothetical protein YP_964758.1 3870000 R 351745 CDS YP_964759.1 120600185 4658554 3870664..3871866 1 NC_008750.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: shm:Shewmr7_0771 putative iron-sulfur cluster binding protein; putative iron-sulfur cluster binding protein 3871866 4658554 Sputw3181_3393 Shewanella sp. W3-18-1 putative iron-sulfur cluster binding protein YP_964759.1 3870664 D 351745 CDS YP_964760.1 120600186 4658689 complement(3871975..3873063) 1 NC_008750.1 PFAM: porin, Gram-negative type; KEGG: son:SO3896 outer membrane porin, putative; porin 3873063 4658689 Sputw3181_3394 Shewanella sp. W3-18-1 porin YP_964760.1 3871975 R 351745 CDS YP_964761.1 120600187 4658684 3874001..3874813 1 NC_008750.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: she:Shewmr4_3226 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 3874813 4658684 Sputw3181_3395 Shewanella sp. W3-18-1 UBA/THIF-type NAD/FAD binding protein YP_964761.1 3874001 D 351745 CDS YP_964762.1 120600188 4658468 complement(3874831..3876477) 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3894 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 3876477 4658468 Sputw3181_3396 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_964762.1 3874831 R 351745 CDS YP_964763.1 120600189 4658469 3876647..3877258 1 NC_008750.1 KEGG: she:Shewmr4_3224 hypothetical protein; hypothetical protein 3877258 4658469 Sputw3181_3397 Shewanella sp. W3-18-1 hypothetical protein YP_964763.1 3876647 D 351745 CDS YP_964764.1 120600190 4658470 complement(3877375..3877506) 1 NC_008750.1 KEGG: sfr:Sfri_0507 hypothetical protein; hypothetical protein 3877506 4658470 Sputw3181_3398 Shewanella sp. W3-18-1 hypothetical protein YP_964764.1 3877375 R 351745 CDS YP_964765.1 120600191 4658471 3877810..3879390 1 NC_008750.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: son:SO3890 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3879390 4658471 Sputw3181_3399 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_964765.1 3877810 D 351745 CDS YP_964766.1 120600192 4658867 complement(3879827..3882103) 1 NC_008750.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3882103 4658867 Sputw3181_3400 Shewanella sp. W3-18-1 DNA topoisomerase IV subunit A YP_964766.1 3879827 R 351745 CDS YP_964767.1 120600193 4658473 complement(3882096..3883271) 1 NC_008750.1 KEGG: shm:Shewmr7_0759 L-sorbosone dehydrogenase, putative; L-sorbosone dehydrogenase 3883271 4658473 Sputw3181_3401 Shewanella sp. W3-18-1 L-sorbosone dehydrogenase YP_964767.1 3882096 R 351745 CDS YP_964768.1 120600194 4658475 complement(3883324..3885210) 1 NC_008750.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3885210 4658475 Sputw3181_3402 Shewanella sp. W3-18-1 DNA topoisomerase IV subunit B YP_964768.1 3883324 R 351745 CDS YP_964769.1 120600195 4658476 complement(3885267..3885842) 1 NC_008750.1 PFAM: protein of unknown function UPF0227; KEGG: she:Shewmr4_3232 protein of unknown function UPF0227; hypothetical protein 3885842 4658476 Sputw3181_3403 Shewanella sp. W3-18-1 hypothetical protein YP_964769.1 3885267 R 351745 CDS YP_964770.1 120600196 4658477 complement(3885869..3886708) 1 NC_008750.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; KEGG: she:Shewmr4_3233 calcineurin phosphoesterase C-terminal domain protein; calcineurin phosphoesterase C-terminal domain-containing protein 3886708 4658477 Sputw3181_3404 Shewanella sp. W3-18-1 calcineurin phosphoesterase C-terminal domain-containing protein YP_964770.1 3885869 R 351745 CDS YP_964771.1 120600197 4658478 complement(3886725..3887165) 1 NC_008750.1 PFAM: protein of unknown function DUF1249; KEGG: son:SO3902 hypothetical protein; hypothetical protein 3887165 4658478 Sputw3181_3405 Shewanella sp. W3-18-1 hypothetical protein YP_964771.1 3886725 R 351745 CDS YP_964772.1 120600198 4658479 complement(3887178..3887780) 1 NC_008750.1 PFAM: NUDIX hydrolase; KEGG: son:SO3903 ADP-ribose pyrophosphatase; ADP-ribose diphosphatase 3887780 4658479 Sputw3181_3406 Shewanella sp. W3-18-1 ADP-ribose diphosphatase YP_964772.1 3887178 R 351745 CDS YP_964773.1 120600199 4658481 3888024..3889331 1 NC_008750.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3889331 tolC 4658481 tolC Shewanella sp. W3-18-1 outer membrane channel protein YP_964773.1 3888024 D 351745 CDS YP_964774.1 120600200 4658480 complement(3889399..3890094) 1 NC_008750.1 KEGG: she:Shewmr4_3237 hypothetical protein; hypothetical protein 3890094 4658480 Sputw3181_3408 Shewanella sp. W3-18-1 hypothetical protein YP_964774.1 3889399 R 351745 CDS YP_964775.1 120600201 4658482 complement(3890139..3891107) 1 NC_008750.1 KEGG: shm:Shewmr7_0751 hypothetical protein; hypothetical protein 3891107 4658482 Sputw3181_3409 Shewanella sp. W3-18-1 hypothetical protein YP_964775.1 3890139 R 351745 CDS YP_964776.1 120600202 4658483 complement(3891119..3891604) 1 NC_008750.1 PFAM: protein of unknown function DUF461; KEGG: son:SO3907 hypothetical protein; hypothetical protein 3891604 4658483 Sputw3181_3410 Shewanella sp. W3-18-1 hypothetical protein YP_964776.1 3891119 R 351745 CDS YP_964777.1 120600203 4658484 3891639..3892376 1 NC_008750.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shm:Shewmr7_0749 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3892376 4658484 Sputw3181_3411 Shewanella sp. W3-18-1 enoyl-CoA hydratase/isomerase YP_964777.1 3891639 D 351745 CDS YP_964778.1 120600204 4658485 complement(3892489..3892689) 1 NC_008750.1 KEGG: she:Shewmr4_3241 phage shock protein C, PspC; phage shock protein C, PspC 3892689 4658485 Sputw3181_3412 Shewanella sp. W3-18-1 phage shock protein C, PspC YP_964778.1 3892489 R 351745 CDS YP_964779.1 120600205 4658486 complement(3892843..3893133) 1 NC_008750.1 KEGG: shm:Shewmr7_0747 hypothetical protein; hypothetical protein 3893133 4658486 Sputw3181_3413 Shewanella sp. W3-18-1 hypothetical protein YP_964779.1 3892843 R 351745 CDS YP_964780.1 120600206 4658487 complement(3893331..3894362) 1 NC_008750.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: she:Shewmr4_3243 TIM-barrel protein, YjbN family; tRNA-dihydrouridine synthase A 3894362 4658487 Sputw3181_3414 Shewanella sp. W3-18-1 tRNA-dihydrouridine synthase A YP_964780.1 3893331 R 351745 CDS YP_964781.1 120600207 4658488 3894876..3895340 1 NC_008750.1 KEGG: shm:Shewmr7_0696 putative chemotaxis protein CheX; putative chemotaxis protein CheX 3895340 4658488 Sputw3181_3415 Shewanella sp. W3-18-1 putative chemotaxis protein CheX YP_964781.1 3894876 D 351745 CDS YP_964782.1 120600208 4658490 complement(3895412..3896488) 1 NC_008750.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 3896488 alr 4658490 alr Shewanella sp. W3-18-1 alanine racemase YP_964782.1 3895412 R 351745 CDS YP_964783.1 120600209 4658491 complement(3896631..3898037) 1 NC_008750.1 KEGG: son:SO3917 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; replicative DNA helicase 3898037 4658491 Sputw3181_3417 Shewanella sp. W3-18-1 replicative DNA helicase YP_964783.1 3896631 R 351745 CDS YP_964784.1 120600210 4658492 3898156..3900354 1 NC_008750.1 KEGG: shm:Shewmr7_0691 hypothetical protein; hypothetical protein 3900354 4658492 Sputw3181_3418 Shewanella sp. W3-18-1 hypothetical protein YP_964784.1 3898156 D 351745 CDS YP_964785.1 120600211 4658493 complement(3900595..3901047) 1 NC_008750.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3901047 rplI 4658493 rplI Shewanella sp. W3-18-1 50S ribosomal protein L9 YP_964785.1 3900595 R 351745 CDS YP_964786.1 120600212 4658494 complement(3901084..3901311) 1 NC_008750.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 3901311 rpsR 4658494 rpsR Shewanella sp. W3-18-1 30S ribosomal protein S18 YP_964786.1 3901084 R 351745 CDS YP_964787.1 120600213 4658495 complement(3901323..3901628) 1 NC_008750.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 3901628 4658495 Sputw3181_3421 Shewanella sp. W3-18-1 primosomal replication protein N YP_964787.1 3901323 R 351745 CDS YP_964788.1 120600214 4658496 complement(3901637..3902032) 1 NC_008750.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 3902032 rpsF 4658496 rpsF Shewanella sp. W3-18-1 30S ribosomal protein S6 YP_964788.1 3901637 R 351745 CDS YP_964789.1 120600215 4658497 3902246..3902989 1 NC_008750.1 PFAM: protein of unknown function DUF481; KEGG: she:Shewmr4_3261 protein of unknown function DUF481; hypothetical protein 3902989 4658497 Sputw3181_3423 Shewanella sp. W3-18-1 hypothetical protein YP_964789.1 3902246 D 351745 CDS YP_964790.1 120600216 4658498 3903310..3904755 1 NC_008750.1 PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_3262 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3904755 4658498 Sputw3181_3424 Shewanella sp. W3-18-1 major facilitator superfamily transporter YP_964790.1 3903310 D 351745 CDS YP_964791.1 120600217 4658499 complement(3904820..3905560) 1 NC_008750.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 3905560 4658499 Sputw3181_3425 Shewanella sp. W3-18-1 23S rRNA (guanosine-2'-O-)-methyltransferase YP_964791.1 3904820 R 351745 CDS YP_964792.1 120600218 4658500 complement(3905561..3907984) 1 NC_008750.1 KEGG: shm:Shewmr7_0683 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R 3907984 4658500 Sputw3181_3426 Shewanella sp. W3-18-1 ribonuclease R YP_964792.1 3905561 R 351745 CDS YP_964793.1 120600219 4658501 complement(3908024..3908680) 1 NC_008750.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: shm:Shewmr7_0682 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 3908680 4658501 Sputw3181_3427 Shewanella sp. W3-18-1 Sel1 domain-containing protein YP_964793.1 3908024 R 351745 CDS YP_964794.1 120600220 4658502 complement(3908790..3910085) 1 NC_008750.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 3910085 4658502 Sputw3181_3428 Shewanella sp. W3-18-1 adenylosuccinate synthetase YP_964794.1 3908790 R 351745 CDS YP_964795.1 120600221 4658503 complement(3910152..3910352) 1 NC_008750.1 KEGG: shm:Shewmr7_0680 hypothetical protein; hypothetical protein 3910352 4658503 Sputw3181_3429 Shewanella sp. W3-18-1 hypothetical protein YP_964795.1 3910152 R 351745 CDS YP_964796.1 120600222 4658660 complement(3910446..3910838) 1 NC_008750.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3910838 rpsI 4658660 rpsI Shewanella sp. W3-18-1 30S ribosomal protein S9 YP_964796.1 3910446 R 351745 CDS YP_964797.1 120600223 4658505 complement(3910853..3911281) 1 NC_008750.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3911281 rplM 4658505 rplM Shewanella sp. W3-18-1 50S ribosomal protein L13 YP_964797.1 3910853 R 351745 CDS YP_964798.1 120600224 4658506 complement(3911570..3912682) 1 NC_008750.1 PFAM: AFG1-family ATPase; KEGG: she:Shewmr4_3270 AFG1-family ATPase; AFG1 family ATPase 3912682 4658506 Sputw3181_3432 Shewanella sp. W3-18-1 AFG1 family ATPase YP_964798.1 3911570 R 351745 CDS YP_964799.1 120600225 4658508 3913101..3914456 1 NC_008750.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: she:Shewmr4_3271 protease Do; protease Do 3914456 4658508 Sputw3181_3433 Shewanella sp. W3-18-1 protease Do YP_964799.1 3913101 D 351745 CDS YP_964800.1 120600226 4658509 3914584..3915666 1 NC_008750.1 TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3943 protease DegS; periplasmic serine protease DegS 3915666 4658509 Sputw3181_3434 Shewanella sp. W3-18-1 periplasmic serine protease DegS YP_964800.1 3914584 D 351745 CDS YP_964801.1 120600227 4658510 complement(3916472..3917674) 1 NC_008750.1 PFAM: Radical SAM domain protein; KEGG: vpa:VPA0443 hypothetical protein; radical SAM domain-containing protein 3917674 4658510 Sputw3181_3435 Shewanella sp. W3-18-1 radical SAM domain-containing protein YP_964801.1 3916472 R 351745 CDS YP_964802.1 120600228 4658512 complement(3917667..3919148) 1 NC_008750.1 PFAM: Radical SAM domain protein; KEGG: vpa:VPA0442 hypothetical protein; radical SAM domain-containing protein 3919148 4658512 Sputw3181_3436 Shewanella sp. W3-18-1 radical SAM domain-containing protein YP_964802.1 3917667 R 351745 CDS YP_964803.1 120600229 4658513 complement(3919148..3919453) 1 NC_008750.1 hypothetical protein 3919453 4658513 Sputw3181_3437 Shewanella sp. W3-18-1 hypothetical protein YP_964803.1 3919148 R 351745 CDS YP_964804.1 120600230 4658514 3919964..3920614 1 NC_008750.1 PFAM: protein of unknown function DUF1234; KEGG: son:SO4650 hypothetical protein; hypothetical protein 3920614 4658514 Sputw3181_3438 Shewanella sp. W3-18-1 hypothetical protein YP_964804.1 3919964 D 351745 CDS YP_964805.1 120600231 4658515 3920684..3920857 1 NC_008750.1 KEGG: son:SO4651 hypothetical protein; hypothetical protein 3920857 4658515 Sputw3181_3439 Shewanella sp. W3-18-1 hypothetical protein YP_964805.1 3920684 D 351745 CDS YP_964806.1 120600232 4658516 3920946..3921959 1 NC_008750.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO4652 sulfate ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter substrate-binding protein 3921959 4658516 Sputw3181_3440 Shewanella sp. W3-18-1 sulfate ABC transporter substrate-binding protein YP_964806.1 3920946 D 351745 CDS YP_964807.1 120600233 4658517 3922028..3922852 1 NC_008750.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4653 sulfate ABC transporter, permease protein; sulfate ABC transporter permease 3922852 4658517 Sputw3181_3441 Shewanella sp. W3-18-1 sulfate ABC transporter permease YP_964807.1 3922028 D 351745 CDS YP_964808.1 120600234 4658518 3922857..3923708 1 NC_008750.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4654 sulfate ABC transporter, permease protein; sulfate ABC transporter permease 3923708 4658518 Sputw3181_3442 Shewanella sp. W3-18-1 sulfate ABC transporter permease YP_964808.1 3922857 D 351745 CDS YP_964809.1 120600235 4658519 3923736..3924800 1 NC_008750.1 KEGG: son:SO4655 sulfate ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 3924800 4658519 Sputw3181_3443 Shewanella sp. W3-18-1 sulfate ABC transporter ATPase YP_964809.1 3923736 D 351745 CDS YP_964810.1 120600236 4658520 complement(3924899..3926059) 1 NC_008750.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: dge:Dgeo_0011 methionine gamma-lyase; methionine gamma-lyase 3926059 4658520 Sputw3181_3444 Shewanella sp. W3-18-1 methionine gamma-lyase YP_964810.1 3924899 R 351745 CDS YP_964811.1 120600237 4658521 complement(3926078..3927082) 1 NC_008750.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: ilo:IL0163 2OG-Fe(II) oxygenase superfamily protein; 2OG-Fe(II) oxygenase 3927082 4658521 Sputw3181_3445 Shewanella sp. W3-18-1 2OG-Fe(II) oxygenase YP_964811.1 3926078 R 351745 CDS YP_964812.1 120600238 4658522 complement(3927512..3928771) 1 NC_008750.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3928771 4658522 Sputw3181_3446 Shewanella sp. W3-18-1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_964812.1 3927512 R 351745 CDS YP_964813.1 120600239 4658523 complement(3928781..3929038) 1 NC_008750.1 PFAM: BolA family protein; KEGG: shm:Shewmr7_3338 BolA family protein; BolA family protein 3929038 4658523 Sputw3181_3447 Shewanella sp. W3-18-1 BolA family protein YP_964813.1 3928781 R 351745 CDS YP_964814.1 120600240 4658526 complement(3929058..3929342) 1 NC_008750.1 KEGG: son:SO3950 SpoIIAA family protein; SpoIIAA family protein 3929342 4658526 Sputw3181_3448 Shewanella sp. W3-18-1 SpoIIAA family protein YP_964814.1 3929058 R 351745 CDS YP_964815.1 120600241 4658527 complement(3929339..3930004) 1 NC_008750.1 PFAM: toluene tolerance family protein; KEGG: shm:Shewmr7_3340 toluene tolerance family protein; toluene tolerance family protein 3930004 4658527 Sputw3181_3449 Shewanella sp. W3-18-1 toluene tolerance family protein YP_964815.1 3929339 R 351745 CDS YP_964816.1 120600242 4658528 complement(3930016..3930489) 1 NC_008750.1 PFAM: Mammalian cell entry related domain protein; KEGG: son:SO3952 mce-related protein; hypothetical protein 3930489 4658528 Sputw3181_3450 Shewanella sp. W3-18-1 hypothetical protein YP_964816.1 3930016 R 351745 CDS YP_964817.1 120600243 4658530 complement(3930546..3931331) 1 NC_008750.1 PFAM: protein of unknown function DUF140; KEGG: son:SO3953 putative membrane protein; hypothetical protein 3931331 4658530 Sputw3181_3451 Shewanella sp. W3-18-1 hypothetical protein YP_964817.1 3930546 R 351745 CDS YP_964818.1 120600244 4658633 complement(3931328..3932146) 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3343 ABC transporter related; ABC transporter-like protein 3932146 4658633 Sputw3181_3452 Shewanella sp. W3-18-1 ABC transporter-like protein YP_964818.1 3931328 R 351745 CDS YP_964819.1 120600245 4658533 3932800..3933777 1 NC_008750.1 KEGG: shm:Shewmr7_3344 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 3933777 4658533 Sputw3181_3453 Shewanella sp. W3-18-1 KpsF/GutQ family protein YP_964819.1 3932800 D 351745 CDS YP_964820.1 120600246 4658534 3933777..3934328 1 NC_008750.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3934328 4658534 Sputw3181_3454 Shewanella sp. W3-18-1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_964820.1 3933777 D 351745 CDS YP_964821.1 120600247 4658568 3934325..3934885 1 NC_008750.1 PFAM: protein of unknown function DUF1239; KEGG: son:SO3958 hypothetical protein; hypothetical protein 3934885 4658568 Sputw3181_3455 Shewanella sp. W3-18-1 hypothetical protein YP_964821.1 3934325 D 351745 CDS YP_964822.1 120600248 4658199 3934872..3935426 1 NC_008750.1 PFAM: OstA family protein; KEGG: son:SO3959 hypothetical protein; OstA family protein 3935426 4658199 Sputw3181_3456 Shewanella sp. W3-18-1 OstA family protein YP_964822.1 3934872 D 351745 CDS YP_964823.1 120600249 4658170 3935423..3936154 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3348 ABC transporter related; ABC transporter-like protein 3936154 4658170 Sputw3181_3457 Shewanella sp. W3-18-1 ABC transporter-like protein YP_964823.1 3935423 D 351745 CDS YP_964824.1 120600250 4658149 3936258..3937733 1 NC_008750.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3937733 4658149 Sputw3181_3458 Shewanella sp. W3-18-1 RNA polymerase factor sigma-54 YP_964824.1 3936258 D 351745 CDS YP_964825.1 120600251 4657723 3937762..3938049 1 NC_008750.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shm:Shewmr7_3350 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA 3938049 4657723 Sputw3181_3459 Shewanella sp. W3-18-1 sigma 54 modulation protein/ribosomal protein S30EA YP_964825.1 3937762 D 351745 CDS YP_964826.1 120600252 4658108 3938052..3938495 1 NC_008750.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: shm:Shewmr7_3351 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 3938495 4658108 Sputw3181_3460 Shewanella sp. W3-18-1 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_964826.1 3938052 D 351745 CDS YP_964827.1 120600253 4658106 3938492..3939346 1 NC_008750.1 PFAM: uncharacterized P-loop ATPase protein UPF0042; KEGG: shm:Shewmr7_3352 uncharacterized P-loop ATPase protein UPF0042; hypothetical protein 3939346 4658106 Sputw3181_3461 Shewanella sp. W3-18-1 hypothetical protein YP_964827.1 3938492 D 351745 CDS YP_964828.1 120600254 4658096 3939333..3939608 1 NC_008750.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: she:Shewmr4_0669 phosphocarrier, HPr family; phosphotransferase system, phosphocarrier protein HPr 3939608 4658096 Sputw3181_3462 Shewanella sp. W3-18-1 phosphotransferase system, phosphocarrier protein HPr YP_964828.1 3939333 D 351745 CDS YP_964829.1 120600255 4658053 3939821..3941185 1 NC_008750.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO3966 magnesium transporter; magnesium transporter 3941185 4658053 Sputw3181_3463 Shewanella sp. W3-18-1 magnesium transporter YP_964829.1 3939821 D 351745 CDS YP_964830.1 120600256 4658043 complement(3941298..3942122) 1 NC_008750.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: she:Shewmr4_0667 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdate ABC transporter substrate-binding protein 3942122 4658043 Sputw3181_3464 Shewanella sp. W3-18-1 molybdate ABC transporter substrate-binding protein YP_964830.1 3941298 R 351745 CDS YP_964831.1 120600257 4658037 complement(3942357..3943043) 1 NC_008750.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: she:Shewmr4_0666 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 3943043 4658037 Sputw3181_3465 Shewanella sp. W3-18-1 OmpA/MotB domain-containing protein YP_964831.1 3942357 R 351745 CDS YP_964832.1 120600258 4657700 3943682..3943915 1 NC_008750.1 PFAM: transposase IS3/IS911 family protein; KEGG: shm:Shewmr7_3357 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 3943915 4657700 Sputw3181_3466 Shewanella sp. W3-18-1 transposase IS3/IS911 family protein YP_964832.1 3943682 D 351745 CDS YP_964833.1 120600259 4658017 complement(3944761..3945618) 1 NC_008750.1 PFAM: protein of unknown function RIO1; KEGG: shm:Shewmr7_3358 protein of unknown function RIO1; hypothetical protein 3945618 4658017 Sputw3181_3467 Shewanella sp. W3-18-1 hypothetical protein YP_964833.1 3944761 R 351745 CDS YP_964834.1 120600260 4658007 3945976..3946524 1 NC_008750.1 KEGG: shm:Shewmr7_3360 hypothetical protein; hypothetical protein 3946524 4658007 Sputw3181_3468 Shewanella sp. W3-18-1 hypothetical protein YP_964834.1 3945976 D 351745 CDS YP_964835.1 120600261 4657994 complement(3948601..3950238) 1 NC_008750.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 3950238 groEL 4657994 groEL Shewanella sp. W3-18-1 chaperonin GroEL YP_964835.1 3948601 R 351745 CDS YP_964836.1 120600262 4657953 complement(3950296..3950586) 1 NC_008750.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 3950586 groES 4657953 groES Shewanella sp. W3-18-1 co-chaperonin GroES YP_964836.1 3950296 R 351745 CDS YP_964837.1 120600263 4657939 3950812..3952182 1 NC_008750.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO0702 MATE efflux family protein; MATE efflux family protein 3952182 4657939 Sputw3181_3471 Shewanella sp. W3-18-1 MATE efflux family protein YP_964837.1 3950812 D 351745 CDS YP_964838.1 120600264 4657932 complement(3952185..3953174) 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0701 transcriptional regulator, LysR family; LysR family transcriptional regulator 3953174 4657932 Sputw3181_3472 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_964838.1 3952185 R 351745 CDS YP_964839.1 120600265 4657894 3953301..3954380 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_0551 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3954380 4657894 Sputw3181_3473 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_964839.1 3953301 D 351745 CDS YP_964840.1 120600266 4657865 3954384..3957467 1 NC_008750.1 PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_0550 acriflavin resistance protein; acriflavin resistance protein 3957467 4657865 Sputw3181_3474 Shewanella sp. W3-18-1 acriflavin resistance protein YP_964840.1 3954384 D 351745 CDS YP_964841.1 120600267 4657821 complement(3957576..3958421) 1 NC_008750.1 KEGG: son:SO0764 hypothetical protein; hypothetical protein 3958421 4657821 Sputw3181_3475 Shewanella sp. W3-18-1 hypothetical protein YP_964841.1 3957576 R 351745 CDS YP_964842.1 120600268 4661885 complement(3958490..3959173) 1 NC_008750.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: she:Shewmr4_3366 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3959173 4661885 Sputw3181_3476 Shewanella sp. W3-18-1 lysine exporter protein LysE/YggA YP_964842.1 3958490 R 351745 CDS YP_964843.1 120600269 4657777 complement(3959283..3960113) 1 NC_008750.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: shm:Shewmr7_0586 transcriptional regulator, AraC family; AraC family transcriptional regulator 3960113 4657777 Sputw3181_3477 Shewanella sp. W3-18-1 AraC family transcriptional regulator YP_964843.1 3959283 R 351745 CDS YP_964844.1 120600270 4657912 complement(3960285..3962321) 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0737 TonB-dependent receptor, putative; TonB-dependent receptor 3962321 4657912 Sputw3181_3478 Shewanella sp. W3-18-1 TonB-dependent receptor YP_964844.1 3960285 R 351745 CDS YP_964845.1 120600271 4657917 complement(3962545..3963483) 1 NC_008750.1 KEGG: son:SO0735 hypothetical protein; hypothetical protein 3963483 4657917 Sputw3181_3479 Shewanella sp. W3-18-1 hypothetical protein YP_964845.1 3962545 R 351745 CDS YP_964846.1 120600272 4657941 complement(3963485..3963883) 1 NC_008750.1 PFAM: transcriptional regulator PadR family protein; KEGG: son:SO0734 hypothetical protein; PadR-like family transcriptional regulator 3963883 4657941 Sputw3181_3480 Shewanella sp. W3-18-1 PadR-like family transcriptional regulator YP_964846.1 3963485 R 351745 CDS YP_964847.1 120600273 4657973 3964234..3964599 1 NC_008750.1 PFAM: Thioredoxin domain; KEGG: she:Shewmr4_3375 thioredoxin domain; thioredoxin domain-containing protein 3964599 4657973 Sputw3181_3481 Shewanella sp. W3-18-1 thioredoxin domain-containing protein YP_964847.1 3964234 D 351745 CDS YP_964848.1 120600274 4657993 complement(3964618..3965130) 1 NC_008750.1 KEGG: son:SO0728 hypothetical protein; hypothetical protein 3965130 4657993 Sputw3181_3482 Shewanella sp. W3-18-1 hypothetical protein YP_964848.1 3964618 R 351745 CDS YP_964849.1 120600275 4660905 complement(3965127..3965423) 1 NC_008750.1 PFAM: protein of unknown function DUF134; Sigma-70, region 4 type 2; KEGG: son:SO0727 hypothetical protein; hypothetical protein 3965423 4660905 Sputw3181_3483 Shewanella sp. W3-18-1 hypothetical protein YP_964849.1 3965127 R 351745 CDS YP_964850.1 120600276 4658039 complement(3965667..3966167) 1 NC_008750.1 KEGG: she:Shewmr4_3376 hypothetical protein; hypothetical protein 3966167 4658039 Sputw3181_3484 Shewanella sp. W3-18-1 hypothetical protein YP_964850.1 3965667 R 351745 CDS YP_964851.1 120600277 4658068 complement(3966514..3967992) 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_3377 ABC transporter related; ABC transporter-like protein 3967992 4658068 Sputw3181_3485 Shewanella sp. W3-18-1 ABC transporter-like protein YP_964851.1 3966514 R 351745 CDS YP_964852.1 120600278 4658123 complement(3968178..3969581) 1 NC_008750.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 3969581 nrfA 4658123 nrfA Shewanella sp. W3-18-1 cytochrome c552 YP_964852.1 3968178 R 351745 CDS YP_964853.1 120600279 4658153 3969823..3971622 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: shm:Shewmr7_3364 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; nitrate/nitrite sensor protein NarQ 3971622 4658153 Sputw3181_3487 Shewanella sp. W3-18-1 nitrate/nitrite sensor protein NarQ YP_964853.1 3969823 D 351745 CDS YP_964854.1 120600280 4658176 3971615..3972244 1 NC_008750.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: shm:Shewmr7_3365 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 3972244 4658176 Sputw3181_3488 Shewanella sp. W3-18-1 two component LuxR family transcriptional regulator YP_964854.1 3971615 D 351745 CDS YP_964855.1 120600281 4658652 complement(3972333..3972764) 1 NC_008750.1 PFAM: uncharacterized conserved protein UCP006287; KEGG: she:Shewmr4_0656 uncharacterized conserved protein UCP006287; hypothetical protein 3972764 4658652 Sputw3181_3489 Shewanella sp. W3-18-1 hypothetical protein YP_964855.1 3972333 R 351745 CDS YP_964856.1 120600282 4658675 3972872..3973864 1 NC_008750.1 PFAM: Mg2+ transporter protein, CorA family protein; KEGG: shm:Shewmr7_3367 Mg2 transporter protein, CorA family protein; Mg2+ transporter protein, CorA family protein 3973864 4658675 Sputw3181_3490 Shewanella sp. W3-18-1 Mg2+ transporter protein, CorA family protein YP_964856.1 3972872 D 351745 CDS YP_964857.1 120600283 4658686 complement(3973944..3975299) 1 NC_008750.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 3975299 4658686 Sputw3181_3491 Shewanella sp. W3-18-1 aspartate kinase III YP_964857.1 3973944 R 351745 CDS YP_964858.1 120600284 4658543 complement(3975720..3976154) 1 NC_008750.1 KEGG: son:SO3987 hypothetical protein; hypothetical protein 3976154 4658543 Sputw3181_3492 Shewanella sp. W3-18-1 hypothetical protein YP_964858.1 3975720 R 351745 CDS YP_964859.1 120600285 4658563 3976738..3977454 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3371 two component transcriptional regulator, winged helix family; two-component response regulator 3977454 4658563 Sputw3181_3493 Shewanella sp. W3-18-1 two-component response regulator YP_964859.1 3976738 D 351745 CDS YP_964860.1 120600286 4658756 complement(3977518..3979800) 1 NC_008750.1 PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: shm:Shewmr7_3372 peptidase S9B, dipeptidylpeptidase IV domain protein; peptidase S9B dipeptidylpeptidase IV subunit 3979800 4658756 Sputw3181_3494 Shewanella sp. W3-18-1 peptidase S9B dipeptidylpeptidase IV subunit YP_964860.1 3977518 R 351745 CDS YP_964861.1 120600287 4658779 3980105..3981097 1 NC_008750.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 3981097 4658779 Sputw3181_3495 Shewanella sp. W3-18-1 fructose-1,6-bisphosphatase YP_964861.1 3980105 D 351745 CDS YP_964862.1 120600288 4658802 3981565..3981921 1 NC_008750.1 hypothetical protein 3981921 4658802 Sputw3181_3496 Shewanella sp. W3-18-1 hypothetical protein YP_964862.1 3981565 D 351745 CDS YP_964863.1 120600289 4658605 3981918..3982268 1 NC_008750.1 PFAM: IS66 Orf2 family protein; KEGG: pha:PSHAa0409 hypothetical protein; IS66 Orf2 family protein 3982268 4658605 Sputw3181_3497 Shewanella sp. W3-18-1 IS66 Orf2 family protein YP_964863.1 3981918 D 351745 CDS YP_964864.1 120600290 4658845 3982349..3983851 1 NC_008750.1 PFAM: transposase IS66; KEGG: pha:PSHAa0410 transposase; transposase IS66 3983851 4658845 Sputw3181_3498 Shewanella sp. W3-18-1 transposase IS66 YP_964864.1 3982349 D 351745 CDS YP_964865.1 120600291 4659050 complement(3984171..3985664) 1 NC_008750.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: nmu:Nmul_A0119 cytidine/deoxycytidylate deaminase, zinc-binding region; zinc-binding CMP/dCMP deaminase 3985664 4659050 Sputw3181_3499 Shewanella sp. W3-18-1 zinc-binding CMP/dCMP deaminase YP_964865.1 3984171 R 351745 CDS YP_964866.1 120600292 4659204 complement(3986746..3987093) 1 NC_008750.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: nmu:Nmul_A1193 transport-associated; transport-associated 3987093 4659204 Sputw3181_3500 Shewanella sp. W3-18-1 transport-associated YP_964866.1 3986746 R 351745 CDS YP_964867.1 120600293 4661771 3987373..3987861 1 NC_008750.1 PFAM: uncharacterized protein UPF0114; KEGG: son:SO3997 hypothetical protein; hypothetical protein 3987861 4661771 Sputw3181_3501 Shewanella sp. W3-18-1 hypothetical protein YP_964867.1 3987373 D 351745 CDS YP_964868.1 120600294 4659274 complement(3988198..3989904) 1 NC_008750.1 PFAM: chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: pha:PSHAa2387 chemotaxis sensory protein; methyl-accepting chemotaxis sensory transducer 3989904 4659274 Sputw3181_3502 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_964868.1 3988198 R 351745 CDS YP_964869.1 120600295 4659291 complement(3990229..3991473) 1 NC_008750.1 PFAM: sodium:dicarboxylate symporter; KEGG: she:Shewmr4_0642 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 3991473 4659291 Sputw3181_3503 Shewanella sp. W3-18-1 sodium:dicarboxylate symporter YP_964869.1 3990229 R 351745 CDS YP_964870.1 120600296 4659118 complement(3991865..3992737) 1 NC_008750.1 KEGG: son:SO4005 hypothetical protein; hypothetical protein 3992737 4659118 Sputw3181_3504 Shewanella sp. W3-18-1 hypothetical protein YP_964870.1 3991865 R 351745 CDS YP_964871.1 120600297 4661027 complement(3992725..3993945) 1 NC_008750.1 KEGG: shm:Shewmr7_3380 hypothetical protein; hypothetical protein 3993945 4661027 Sputw3181_3505 Shewanella sp. W3-18-1 hypothetical protein YP_964871.1 3992725 R 351745 CDS YP_964872.1 120600298 4659379 complement(3993994..3994647) 1 NC_008750.1 KEGG: shm:Shewmr7_3381 hypothetical protein; hypothetical protein 3994647 4659379 Sputw3181_3506 Shewanella sp. W3-18-1 hypothetical protein YP_964872.1 3993994 R 351745 CDS YP_964873.1 120600299 4659382 complement(3994760..3998431) 1 NC_008750.1 KEGG: she:Shewmr4_0638 hypothetical protein; hypothetical protein 3998431 4659382 Sputw3181_3507 Shewanella sp. W3-18-1 hypothetical protein YP_964873.1 3994760 R 351745 CDS YP_964874.1 120600300 4659419 complement(3998748..3999359) 1 NC_008750.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: she:Shewmr4_0637 two component transcriptional regulator, LuxR family; response regulator receiver protein 3999359 4659419 Sputw3181_3508 Shewanella sp. W3-18-1 response regulator receiver protein YP_964874.1 3998748 R 351745 CDS YP_964875.1 120600301 4659881 complement(3999359..4001341) 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_0636 periplasmic sensor signal transduction histidine kinase; histidine kinase 4001341 4659881 Sputw3181_3509 Shewanella sp. W3-18-1 histidine kinase YP_964875.1 3999359 R 351745 CDS YP_964876.1 120600302 4659894 4001647..4002429 1 NC_008750.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: she:Shewmr4_0635 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4002429 4659894 Sputw3181_3510 Shewanella sp. W3-18-1 4Fe-4S ferredoxin YP_964876.1 4001647 D 351745 CDS YP_964877.1 120600303 4659910 4002419..4003501 1 NC_008750.1 PFAM: Polysulphide reductase, NrfD; KEGG: she:Shewmr4_0634 polysulphide reductase, NrfD; polysulfide reductase, NrfD 4003501 4659910 Sputw3181_3511 Shewanella sp. W3-18-1 polysulfide reductase, NrfD YP_964877.1 4002419 D 351745 CDS YP_964878.1 120600304 4659931 4003537..4006644 1 NC_008750.1 PFAM: molydopterin dinucleotide-binding region; KEGG: she:Shewmr4_0633 molydopterin dinucleotide-binding region; molydopterin dinucleotide-binding region 4006644 4659931 Sputw3181_3512 Shewanella sp. W3-18-1 molydopterin dinucleotide-binding region YP_964878.1 4003537 D 351745 CDS YP_964879.1 120600305 4659970 4006962..4008269 1 NC_008750.1 KEGG: she:Shewmr4_0632 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 4008269 4659970 Sputw3181_3513 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_964879.1 4006962 D 351745 CDS YP_964880.1 120600306 4659986 complement(4008358..4009059) 1 NC_008750.1 KEGG: son:SO4011 hypothetical protein; hypothetical protein 4009059 4659986 Sputw3181_3514 Shewanella sp. W3-18-1 hypothetical protein YP_964880.1 4008358 R 351745 CDS YP_964881.1 120600307 4660023 complement(4009259..4009489) 1 NC_008750.1 KEGG: son:SO4012 hypothetical protein; hypothetical protein 4009489 4660023 Sputw3181_3515 Shewanella sp. W3-18-1 hypothetical protein YP_964881.1 4009259 R 351745 CDS YP_964882.1 120600308 4660025 complement(4009634..4010029) 1 NC_008750.1 KEGG: shm:Shewmr7_3401 hypothetical protein; hypothetical protein 4010029 4660025 Sputw3181_3516 Shewanella sp. W3-18-1 hypothetical protein YP_964882.1 4009634 R 351745 CDS YP_964883.1 120600309 4660056 complement(4010109..4010387) 1 NC_008750.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO0635 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase 4010387 4660056 Sputw3181_3517 Shewanella sp. W3-18-1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_964883.1 4010109 R 351745 CDS YP_964884.1 120600310 4660431 complement(4010538..4012877) 1 NC_008750.1 KEGG: she:Shewmr4_0624 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; penicillin-binding protein 1B 4012877 4660431 Sputw3181_3518 Shewanella sp. W3-18-1 penicillin-binding protein 1B YP_964884.1 4010538 R 351745 CDS YP_964885.1 120600311 4660471 complement(4012920..4015460) 1 NC_008750.1 KEGG: shm:Shewmr7_3407 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like; ATP-dependent helicase HrpB 4015460 4660471 Sputw3181_3519 Shewanella sp. W3-18-1 ATP-dependent helicase HrpB YP_964885.1 4012920 R 351745 CDS YP_964886.1 120600312 4660477 complement(4015518..4017725) 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: she:Shewmr4_0621 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 4017725 4660477 Sputw3181_3520 Shewanella sp. W3-18-1 diguanylate cyclase/phosphodiesterase YP_964886.1 4015518 R 351745 CDS YP_964887.1 120600313 4660918 complement(4018012..4018791) 1 NC_008750.1 KEGG: son:SO0625 hypothetical protein; hypothetical protein 4018791 4660918 Sputw3181_3521 Shewanella sp. W3-18-1 hypothetical protein YP_964887.1 4018012 R 351745 CDS YP_964888.1 120600314 4660559 4019214..4019849 1 NC_008750.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 4019849 4660559 Sputw3181_3522 Shewanella sp. W3-18-1 cAMP-regulatory protein YP_964888.1 4019214 D 351745 CDS YP_964889.1 120600315 4660602 4019932..4020279 1 NC_008750.1 KEGG: shm:Shewmr7_3413 hypothetical protein; hypothetical protein 4020279 4660602 Sputw3181_3523 Shewanella sp. W3-18-1 hypothetical protein YP_964889.1 4019932 D 351745 CDS YP_964890.1 120600316 4660679 4020260..4020934 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3414 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4020934 4660679 Sputw3181_3524 Shewanella sp. W3-18-1 two component transcriptional regulator YP_964890.1 4020260 D 351745 CDS YP_964891.1 120600317 4660400 4020931..4022259 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_3415 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4022259 4660400 Sputw3181_3525 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_964891.1 4020931 D 351745 CDS YP_964892.1 120600318 4660721 complement(4022345..4023148) 1 NC_008750.1 KEGG: she:Shewmr4_0614 hypothetical protein; hypothetical protein 4023148 4660721 Sputw3181_3526 Shewanella sp. W3-18-1 hypothetical protein YP_964892.1 4022345 R 351745 CDS YP_964893.1 120600319 4660733 complement(4023344..4024804) 1 NC_008750.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 4024804 astD 4660733 astD Shewanella sp. W3-18-1 succinylglutamic semialdehyde dehydrogenase YP_964893.1 4023344 R 351745 CDS YP_964894.1 120600320 4660757 complement(4024815..4025834) 1 NC_008750.1 PFAM: arginine N-succinyltransferase beta subunit; KEGG: shm:Shewmr7_3418 arginine N-succinyltransferase; arginine N-succinyltransferase 4025834 4660757 Sputw3181_3528 Shewanella sp. W3-18-1 arginine N-succinyltransferase YP_964894.1 4024815 R 351745 CDS YP_964895.1 120600321 4660412 complement(4025961..4027178) 1 NC_008750.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 4027178 argD 4660412 argD Shewanella sp. W3-18-1 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_964895.1 4025961 R 351745 CDS YP_964896.1 120600322 4661182 complement(4027487..4028398) 1 NC_008750.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: shm:Shewmr7_3420 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 4028398 4661182 Sputw3181_3530 Shewanella sp. W3-18-1 alpha/beta hydrolase domain-containing protein YP_964896.1 4027487 R 351745 CDS YP_964897.1 120600323 4661245 complement(4028446..4029591) 1 NC_008750.1 PFAM: HDOD; KEGG: she:Shewmr4_0609 putative signal transduction protein; putative signal transduction protein 4029591 4661245 Sputw3181_3531 Shewanella sp. W3-18-1 putative signal transduction protein YP_964897.1 4028446 R 351745 CDS YP_964898.1 120600324 4661023 complement(4029779..4032259) 1 NC_008750.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: shm:Shewmr7_3422 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 4032259 4661023 Sputw3181_3532 Shewanella sp. W3-18-1 peptidase S9 prolyl oligopeptidase YP_964898.1 4029779 R 351745 CDS YP_964899.1 120600325 4661289 complement(4032426..4033004) 1 NC_008750.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: she:Shewmr4_0607 glutamine amidotransferase of anthranilate synthase; glutamine amidotransferase of anthranilate synthase 4033004 4661289 Sputw3181_3533 Shewanella sp. W3-18-1 glutamine amidotransferase of anthranilate synthase YP_964899.1 4032426 R 351745 CDS YP_964900.1 120600326 4661309 complement(4033123..4033833) 1 NC_008750.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: son:SO4028 single-strand binding protein; single-strand binding protein 4033833 4661309 Sputw3181_3534 Shewanella sp. W3-18-1 single-strand binding protein YP_964900.1 4033123 R 351745 CDS YP_964901.1 120600327 4661315 complement(4033941..4035308) 1 NC_008750.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4029 transporter, putative; major facilitator superfamily transporter 4035308 4661315 Sputw3181_3535 Shewanella sp. W3-18-1 major facilitator superfamily transporter YP_964901.1 4033941 R 351745 CDS YP_964902.1 120600328 4661340 4035707..4038583 1 NC_008750.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: son:SO4030 excinuclease ABC, A subunit; excinuclease ABC subunit A 4038583 4661340 Sputw3181_3536 Shewanella sp. W3-18-1 excinuclease ABC subunit A YP_964902.1 4035707 D 351745 CDS YP_964903.1 120600329 4661358 4038888..4040810 1 NC_008750.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO4034 ATP-dependent RNA helicase DeaD; DEAD/DEAH box helicase 4040810 4661358 Sputw3181_3537 Shewanella sp. W3-18-1 DEAD/DEAH box helicase YP_964903.1 4038888 D 351745 CDS YP_964904.1 120600330 4661386 4040949..4041320 1 NC_008750.1 KEGG: she:Shewmr4_3425 hypothetical protein; hypothetical protein 4041320 4661386 Sputw3181_3538 Shewanella sp. W3-18-1 hypothetical protein YP_964904.1 4040949 D 351745 CDS YP_964905.1 120600331 4661388 complement(4041317..4041931) 1 NC_008750.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO4039 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 4041931 4661388 Sputw3181_3539 Shewanella sp. W3-18-1 HAD family hydrolase YP_964905.1 4041317 R 351745 CDS YP_964906.1 120600332 4661512 complement(4041961..4042980) 1 NC_008750.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4040 integral membrane domain protein; hypothetical protein 4042980 4661512 Sputw3181_3540 Shewanella sp. W3-18-1 hypothetical protein YP_964906.1 4041961 R 351745 CDS YP_964907.1 120600333 4661505 4043254..4044060 1 NC_008750.1 KEGG: son:SO4042 hydratase/decarboxylase family protein; hydratase/decarboxylase family protein 4044060 4661505 Sputw3181_3541 Shewanella sp. W3-18-1 hydratase/decarboxylase family protein YP_964907.1 4043254 D 351745 CDS YP_964908.1 120600334 4661548 4044240..4045352 1 NC_008750.1 TIGRFAM: TonB family protein; KEGG: son:SO4043 TonB domain protein; TonB family protein 4045352 4661548 Sputw3181_3542 Shewanella sp. W3-18-1 TonB family protein YP_964908.1 4044240 D 351745 CDS YP_964909.1 120600335 4661558 complement(4045392..4045721) 1 NC_008750.1 KEGG: son:SO4044 hypothetical protein; hypothetical protein 4045721 4661558 Sputw3181_3543 Shewanella sp. W3-18-1 hypothetical protein YP_964909.1 4045392 R 351745 CDS YP_964910.1 120600336 4661629 complement(4046520..4047440) 1 NC_008750.1 KEGG: psp:PSPPH_1876 hypothetical protein; hypothetical protein 4047440 4661629 Sputw3181_3544 Shewanella sp. W3-18-1 hypothetical protein YP_964910.1 4046520 R 351745 CDS YP_964911.1 120600337 4661640 complement(4047545..4048408) 1 NC_008750.1 hypothetical protein 4048408 4661640 Sputw3181_3545 Shewanella sp. W3-18-1 hypothetical protein YP_964911.1 4047545 R 351745 CDS YP_964912.1 120600338 4661667 complement(4049276..4050343) 1 NC_008750.1 PFAM: cytochrome c, class I; KEGG: son:SO4047 cytochrome c family protein; cytochrome c, class I 4050343 4661667 Sputw3181_3546 Shewanella sp. W3-18-1 cytochrome c, class I YP_964912.1 4049276 R 351745 CDS YP_964913.1 120600339 4661680 complement(4050354..4050980) 1 NC_008750.1 KEGG: shm:Shewmr7_0519 cytochrome c family protein; cytochrome c family protein 4050980 4661680 Sputw3181_3547 Shewanella sp. W3-18-1 cytochrome c family protein YP_964913.1 4050354 R 351745 CDS YP_964914.1 120600340 4661632 complement(4051123..4052151) 1 NC_008750.1 KEGG: she:Shewmr4_3433 hypothetical protein; hypothetical protein 4052151 4661632 Sputw3181_3548 Shewanella sp. W3-18-1 hypothetical protein YP_964914.1 4051123 R 351745 CDS YP_964915.1 120600341 4661492 complement(4052319..4053377) 1 NC_008750.1 PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_0517 secretion protein HlyD family protein; secretion protein HlyD family protein 4053377 4661492 Sputw3181_3549 Shewanella sp. W3-18-1 secretion protein HlyD family protein YP_964915.1 4052319 R 351745 CDS YP_964916.1 120600342 4661055 complement(4053386..4053892) 1 NC_008750.1 PFAM: regulatory protein, MarR; KEGG: she:Shewmr4_3435 transcriptional regulator, MarR family; MarR family transcriptional regulator 4053892 4661055 Sputw3181_3550 Shewanella sp. W3-18-1 MarR family transcriptional regulator YP_964916.1 4053386 R 351745 CDS YP_964917.1 120600343 4661016 4054080..4055984 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4053 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4055984 4661016 Sputw3181_3551 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_964917.1 4054080 D 351745 CDS YP_964918.1 120600344 4661395 complement(4056047..4056934) 1 NC_008750.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 4056934 metF 4661395 metF Shewanella sp. W3-18-1 5,10-methylenetetrahydrofolate reductase YP_964918.1 4056047 R 351745 CDS YP_964919.1 120600345 4661826 complement(4057171..4059564) 1 NC_008750.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4059564 metL 4661826 metL Shewanella sp. W3-18-1 bifunctional aspartate kinase II/homoserine dehydrogenase II YP_964919.1 4057171 R 351745 CDS YP_964920.1 120600346 4661037 complement(4059576..4060739) 1 NC_008750.1 KEGG: son:SO4056 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-succinylhomoserine (thiol)-lyase 4060739 4661037 Sputw3181_3554 Shewanella sp. W3-18-1 O-succinylhomoserine (thiol)-lyase YP_964920.1 4059576 R 351745 CDS YP_964921.1 120600347 4661012 4060952..4061266 1 NC_008750.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4061266 4661012 Sputw3181_3555 Shewanella sp. W3-18-1 transcriptional repressor protein MetJ YP_964921.1 4060952 D 351745 CDS YP_964922.1 120600348 4661083 4061409..4062152 1 NC_008750.1 PFAM: protein of unknown function DUF81; KEGG: son:SO4058 hypothetical protein; hypothetical protein 4062152 4661083 Sputw3181_3556 Shewanella sp. W3-18-1 hypothetical protein YP_964922.1 4061409 D 351745 CDS YP_964923.1 120600349 4661086 complement(4062258..4063205) 1 NC_008750.1 PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4060 polysulfide reductase, subunit C; polysulfide reductase, NrfD 4063205 4661086 Sputw3181_3557 Shewanella sp. W3-18-1 polysulfide reductase, NrfD YP_964923.1 4062258 R 351745 CDS YP_964924.1 120600350 4661075 complement(4063208..4063774) 1 NC_008750.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4061 polysulfide reductase, subunit B; 4Fe-4S ferredoxin 4063774 4661075 Sputw3181_3558 Shewanella sp. W3-18-1 4Fe-4S ferredoxin YP_964924.1 4063208 R 351745 CDS YP_964925.1 120600351 4660422 complement(4066448..4067065) 1 NC_008750.1 KEGG: she:Shewmr4_3445 pentapeptide repeat protein; pentapeptide repeat-containing protein 4067065 4660422 Sputw3181_3561 Shewanella sp. W3-18-1 pentapeptide repeat-containing protein YP_964925.1 4066448 R 351745 CDS YP_964926.1 120600352 4661070 4067183..4067599 1 NC_008750.1 KEGG: shm:Shewmr7_0505 hypothetical protein; hypothetical protein 4067599 4661070 Sputw3181_3562 Shewanella sp. W3-18-1 hypothetical protein YP_964926.1 4067183 D 351745 CDS YP_964927.1 120600353 4661124 4067586..4068689 1 NC_008750.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 4068689 4661124 Sputw3181_3563 Shewanella sp. W3-18-1 phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_964927.1 4067586 D 351745 CDS YP_964928.1 120600354 4657998 complement(4068773..4070158) 1 NC_008750.1 PFAM: transposase Tn5, dimerisation domain protein; KEGG: plu:plu4494 transposase, IS4 family; transposase Tn5 dimerisation subunit 4070158 4657998 Sputw3181_3564 Shewanella sp. W3-18-1 transposase Tn5 dimerisation subunit YP_964928.1 4068773 R 351745 CDS YP_964929.1 120600355 4658841 complement(4071176..4071724) 1 NC_008750.1 KEGG: she:Shewmr4_2242 diguanylate phosphodiesterase; putative diguanylate phosphodiesterase 4071724 4658841 Sputw3181_3566 Shewanella sp. W3-18-1 putative diguanylate phosphodiesterase YP_964929.1 4071176 R 351745 CDS YP_964930.1 120600356 4660344 complement(4072361..4073236) 1 NC_008750.1 PFAM: MORN variant repeat protein; KEGG: fnu:FN2119 hypothetical exported 24-amino acid repeat protein; MORN repeat-containing protein 4073236 4660344 Sputw3181_3567 Shewanella sp. W3-18-1 MORN repeat-containing protein YP_964930.1 4072361 R 351745 CDS YP_964931.1 120600357 4661612 complement(4073824..4074402) 1 NC_008750.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: sfr:Sfri_0734 OmpA domain protein transmembrane region-containing protein; OmpA domain-containing protein 4074402 4661612 Sputw3181_3568 Shewanella sp. W3-18-1 OmpA domain-containing protein YP_964931.1 4073824 R 351745 CDS YP_964932.1 120600358 4661787 4074965..4077115 1 NC_008750.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_3717 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 4077115 4661787 Sputw3181_3569 Shewanella sp. W3-18-1 TonB-dependent siderophore receptor YP_964932.1 4074965 D 351745 CDS YP_964933.1 120600359 4660891 complement(4077159..4077950) 1 NC_008750.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_0501 methyltransferase type 11; type 11 methyltransferase 4077950 4660891 Sputw3181_3570 Shewanella sp. W3-18-1 type 11 methyltransferase YP_964933.1 4077159 R 351745 CDS YP_964934.1 120600360 4660926 complement(4078091..4078867) 1 NC_008750.1 PFAM: EAL domain protein; KEGG: tcx:Tcr_0028 diguanylate phosphodiesterase (EAL domain); diguanylate phosphodiesterase 4078867 4660926 Sputw3181_3571 Shewanella sp. W3-18-1 diguanylate phosphodiesterase YP_964934.1 4078091 R 351745 CDS YP_964935.1 120600361 4660881 complement(4079071..4079784) 1 NC_008750.1 PFAM: protein of unknown function DUF541; KEGG: shm:Shewmr7_0500 protein of unknown function DUF541; hypothetical protein 4079784 4660881 Sputw3181_3572 Shewanella sp. W3-18-1 hypothetical protein YP_964935.1 4079071 R 351745 CDS YP_964936.1 120600362 4660812 4080166..4081584 1 NC_008750.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 4081584 rimO 4660812 rimO Shewanella sp. W3-18-1 30S ribosomal protein S12 methylthiotransferase YP_964936.1 4080166 D 351745 CDS YP_964937.1 120600363 4660758 complement(4081697..4083100) 1 NC_008750.1 TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: chu:CHU_3664 fumarate hydratase/aspartate ammonia-lyase; class II fumarate hydratase 4083100 4660758 Sputw3181_3574 Shewanella sp. W3-18-1 class II fumarate hydratase YP_964937.1 4081697 R 351745 CDS YP_964938.1 120600364 4660724 complement(4083309..4083533) 1 NC_008750.1 PFAM: protein of unknown function DUF331; KEGG: shm:Shewmr7_0498 protein of unknown function DUF331; hypothetical protein 4083533 4660724 Sputw3181_3575 Shewanella sp. W3-18-1 hypothetical protein YP_964938.1 4083309 R 351745 CDS YP_964939.1 120600365 4660554 4083784..4084632 1 NC_008750.1 KEGG: shm:Shewmr7_0497 hypothetical protein; hypothetical protein 4084632 4660554 Sputw3181_3576 Shewanella sp. W3-18-1 hypothetical protein YP_964939.1 4083784 D 351745 CDS YP_964940.1 120600366 4660469 4084798..4086939 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4077 TonB-dependent receptor, putative; TonB-dependent receptor 4086939 4660469 Sputw3181_3577 Shewanella sp. W3-18-1 TonB-dependent receptor YP_964940.1 4084798 D 351745 CDS YP_964941.1 120600367 4661034 complement(4087116..4088459) 1 NC_008750.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: she:Shewmr4_3455 peptidase U62, modulator of DNA gyrase; C69 family peptidase 4088459 4661034 Sputw3181_3578 Shewanella sp. W3-18-1 C69 family peptidase YP_964941.1 4087116 R 351745 CDS YP_964942.1 120600368 4660184 4088646..4089182 1 NC_008750.1 PFAM: protein of unknown function DUF615; KEGG: shm:Shewmr7_0494 protein of unknown function DUF615; hypothetical protein 4089182 4660184 Sputw3181_3579 Shewanella sp. W3-18-1 hypothetical protein YP_964942.1 4088646 D 351745 CDS YP_964943.1 120600369 4660167 4089212..4091734 1 NC_008750.1 PFAM: Ig domain protein, group 1 domain protein; KEGG: shm:Shewmr7_0493 Ig domain protein, group 1 domain protein; Ig domain-containing protein 4091734 4660167 Sputw3181_3580 Shewanella sp. W3-18-1 Ig domain-containing protein YP_964943.1 4089212 D 351745 CDS YP_964944.1 120600370 4659992 complement(4091883..4092350) 1 NC_008750.1 PFAM: MgtC/SapB transporter; KEGG: pcr:Pcryo_2508 MgtC/SapB transporter; MgtC/SapB transporter 4092350 4659992 Sputw3181_3581 Shewanella sp. W3-18-1 MgtC/SapB transporter YP_964944.1 4091883 R 351745 CDS YP_964945.1 120600371 4659945 4092643..4095027 1 NC_008750.1 PFAM: Catalase domain protein; KEGG: nmu:Nmul_A1515 catalase; catalase 4095027 4659945 Sputw3181_3582 Shewanella sp. W3-18-1 catalase YP_964945.1 4092643 D 351745 CDS YP_964946.1 120600372 4659672 4095108..4095728 1 NC_008750.1 KEGG: bam:Bamb_5633 hypothetical protein; hypothetical protein 4095728 4659672 Sputw3181_3583 Shewanella sp. W3-18-1 hypothetical protein YP_964946.1 4095108 D 351745 CDS YP_964947.1 120600373 4659577 4095879..4096949 1 NC_008750.1 KEGG: pfo:Pfl_3517 hypothetical protein; hypothetical protein 4096949 4659577 Sputw3181_3584 Shewanella sp. W3-18-1 hypothetical protein YP_964947.1 4095879 D 351745 CDS YP_964948.1 120600374 4659546 complement(4097150..4098481) 1 NC_008750.1 PFAM: amino acid permease-associated region; KEGG: she:Shewmr4_3458 amino acid permease-associated region; amino acid permease-associated protein 4098481 4659546 Sputw3181_3585 Shewanella sp. W3-18-1 amino acid permease-associated protein YP_964948.1 4097150 R 351745 CDS YP_964949.1 120600375 4659140 complement(4098905..4099792) 1 NC_008750.1 PFAM: Ion transport protein; KEGG: sde:Sde_1761 cold shock protein; Ion transport protein 4099792 4659140 Sputw3181_3586 Shewanella sp. W3-18-1 Ion transport protein YP_964949.1 4098905 R 351745 CDS YP_964950.1 120600376 4659425 complement(4100024..4101172) 1 NC_008750.1 PFAM: ABC-2 type transporter; KEGG: she:Shewmr4_3461 ABC-2 type transporter; ABC transporter 4101172 4659425 Sputw3181_3587 Shewanella sp. W3-18-1 ABC transporter YP_964950.1 4100024 R 351745 CDS YP_964951.1 120600377 4659113 complement(4101174..4102400) 1 NC_008750.1 PFAM: ABC-2 type transporter; KEGG: son:SO4088 conserved hypothetical protein; ABC transporter 4102400 4659113 Sputw3181_3588 Shewanella sp. W3-18-1 ABC transporter YP_964951.1 4101174 R 351745 CDS YP_964952.1 120600378 4659261 complement(4102469..4103443) 1 NC_008750.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO4089 HlyD family secretion protein; secretion protein HlyD family protein 4103443 4659261 Sputw3181_3589 Shewanella sp. W3-18-1 secretion protein HlyD family protein YP_964952.1 4102469 R 351745 CDS YP_964953.1 120600379 4659181 complement(4103433..4104827) 1 NC_008750.1 PFAM: outer membrane efflux protein; KEGG: shm:Shewmr7_0487 outer membrane efflux protein; outer membrane efflux protein 4104827 4659181 Sputw3181_3590 Shewanella sp. W3-18-1 outer membrane efflux protein YP_964953.1 4103433 R 351745 CDS YP_964954.1 120600380 4658946 complement(4104953..4106401) 1 NC_008750.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: son:SO4091 TldD protein; C69 family peptidase 4106401 4658946 Sputw3181_3591 Shewanella sp. W3-18-1 C69 family peptidase YP_964954.1 4104953 R 351745 CDS YP_964955.1 120600381 4658848 complement(4106535..4107365) 1 NC_008750.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: son:SO4092 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4107365 4658848 Sputw3181_3592 Shewanella sp. W3-18-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_964955.1 4106535 R 351745 CDS YP_964956.1 120600382 4658789 complement(4107289..4111440) 1 NC_008750.1 KEGG: she:Shewmr4_3467 hypothetical protein; hypothetical protein 4111440 4658789 Sputw3181_3593 Shewanella sp. W3-18-1 hypothetical protein YP_964956.1 4107289 R 351745 CDS YP_964957.1 120600383 4658551 complement(4111440..4112948) 1 NC_008750.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 4112948 4658551 Sputw3181_3594 Shewanella sp. W3-18-1 ribonuclease G YP_964957.1 4111440 R 351745 CDS YP_964958.1 120600384 4658441 complement(4113129..4113725) 1 NC_008750.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: shm:Shewmr7_0482 maf protein; maf protein 4113725 4658441 Sputw3181_3595 Shewanella sp. W3-18-1 maf protein YP_964958.1 4113129 R 351745 CDS YP_964959.1 120600385 4657746 complement(4113728..4114216) 1 NC_008750.1 PFAM: Rod shape-determining protein MreD; KEGG: son:SO4096 rod shape-determining protein MreD; rod shape-determining protein MreD 4114216 4657746 Sputw3181_3596 Shewanella sp. W3-18-1 rod shape-determining protein MreD YP_964959.1 4113728 R 351745 CDS YP_964960.1 120600386 4658180 complement(4114216..4115220) 1 NC_008750.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 4115220 4658180 Sputw3181_3597 Shewanella sp. W3-18-1 rod shape-determining protein MreC YP_964960.1 4114216 R 351745 CDS YP_964961.1 120600387 4658079 complement(4115264..4116313) 1 NC_008750.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 4116313 4658079 Sputw3181_3598 Shewanella sp. W3-18-1 rod shape-determining protein MreB YP_964961.1 4115264 R 351745 CDS YP_964962.1 120600388 4658014 complement(4116657..4120433) 1 NC_008750.1 KEGG: shm:Shewmr7_0478 MSHA biogenesis protein MshQ; MSHA biogenesis protein MshQ 4120433 4658014 Sputw3181_3599 Shewanella sp. W3-18-1 MSHA biogenesis protein MshQ YP_964962.1 4116657 R 351745 CDS YP_964963.1 120600389 4657852 complement(4120426..4120869) 1 NC_008750.1 KEGG: shm:Shewmr7_0477 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP 4120869 4657852 Sputw3181_3600 Shewanella sp. W3-18-1 MSHA biogenesis protein MshP YP_964963.1 4120426 R 351745 CDS YP_964964.1 120600390 4657832 complement(4120904..4121749) 1 NC_008750.1 KEGG: son:SO4102 MSHA biogenesis protein MshO; MSHA biogenesis protein MshO 4121749 4657832 Sputw3181_3601 Shewanella sp. W3-18-1 MSHA biogenesis protein MshO YP_964964.1 4120904 R 351745 CDS YP_964965.1 120600391 4658411 complement(4121749..4122297) 1 NC_008750.1 KEGG: shm:Shewmr7_0475 methylation site containing protein; methylation site containing protein 4122297 4658411 Sputw3181_3602 Shewanella sp. W3-18-1 methylation site containing protein YP_964965.1 4121749 R 351745 CDS YP_964966.1 120600392 4657890 complement(4122287..4122775) 1 NC_008750.1 KEGG: son:SO4104 MSHA pilin protein MshC; MSHA pilin protein MshC 4122775 4657890 Sputw3181_3603 Shewanella sp. W3-18-1 MSHA pilin protein MshC YP_964966.1 4122287 R 351745 CDS YP_964967.1 120600393 4657915 complement(4122983..4123492) 1 NC_008750.1 KEGG: she:Shewmr4_3478 methylation site containing protein; methylation site containing protein 4123492 4657915 Sputw3181_3604 Shewanella sp. W3-18-1 methylation site containing protein YP_964967.1 4122983 R 351745 CDS YP_964968.1 120600394 4657961 complement(4123506..4124015) 1 NC_008750.1 KEGG: she:Shewmr4_3479 methylation site containing protein; methylation site containing protein 4124015 4657961 Sputw3181_3605 Shewanella sp. W3-18-1 methylation site containing protein YP_964968.1 4123506 R 351745 CDS YP_964969.1 120600395 4658018 complement(4124067..4124684) 1 NC_008750.1 KEGG: son:SO4106 MSHA pilin protein MshB; MSHA pilin protein MshB 4124684 4658018 Sputw3181_3606 Shewanella sp. W3-18-1 MSHA pilin protein MshB YP_964969.1 4124067 R 351745 CDS YP_964970.1 120600396 4658117 complement(4124761..4125255) 1 NC_008750.1 KEGG: son:SO4107 hypothetical protein; hypothetical protein 4125255 4658117 Sputw3181_3607 Shewanella sp. W3-18-1 hypothetical protein YP_964970.1 4124761 R 351745 CDS YP_964971.1 120600397 4657752 complement(4125299..4126519) 1 NC_008750.1 PFAM: type II secretion system protein; KEGG: son:SO4108 MSHA biogenesis protein MshG; type II secretion system protein 4126519 4657752 Sputw3181_3608 Shewanella sp. W3-18-1 type II secretion system protein YP_964971.1 4125299 R 351745 CDS YP_964972.1 120600398 4658452 complement(4126522..4128282) 1 NC_008750.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: shm:Shewmr7_0469 type II secretion system protein E; type II secretion system protein E 4128282 4658452 Sputw3181_3609 Shewanella sp. W3-18-1 type II secretion system protein E YP_964972.1 4126522 R 351745 CDS YP_964973.1 120600399 4658396 complement(4128279..4129469) 1 NC_008750.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO4110 MSHA biogenesis protein MshN, putative; hypothetical protein 4129469 4658396 Sputw3181_3610 Shewanella sp. W3-18-1 hypothetical protein YP_964973.1 4128279 R 351745 CDS YP_964974.1 120600400 4658635 complement(4129466..4130392) 1 NC_008750.1 KEGG: she:Shewmr4_3485 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM 4130392 4658635 Sputw3181_3611 Shewanella sp. W3-18-1 MSHA biogenesis protein MshM YP_964974.1 4129466 R 351745 CDS YP_964975.1 120600401 4658387 complement(4130399..4132075) 1 NC_008750.1 TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB, short N-terminal domain; KEGG: she:Shewmr4_3486 pilus (MSHA type) biogenesis protein MshL; pilus (MSHA type) biogenesis protein MshL 4132075 4658387 Sputw3181_3612 Shewanella sp. W3-18-1 pilus (MSHA type) biogenesis protein MshL YP_964975.1 4130399 R 351745 CDS YP_964976.1 120600402 4658743 complement(4132090..4132407) 1 NC_008750.1 KEGG: shm:Shewmr7_0465 MSHA biogenesis protein MshK; MSHA biogenesis protein MshK 4132407 4658743 Sputw3181_3613 Shewanella sp. W3-18-1 MSHA biogenesis protein MshK YP_964976.1 4132090 R 351745 CDS YP_964977.1 120600403 4658782 complement(4132394..4133044) 1 NC_008750.1 KEGG: shm:Shewmr7_0464 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ 4133044 4658782 Sputw3181_3614 Shewanella sp. W3-18-1 MSHA biogenesis protein MshJ YP_964977.1 4132394 R 351745 CDS YP_964978.1 120600404 4658842 complement(4133041..4133643) 1 NC_008750.1 KEGG: shm:Shewmr7_0463 hypothetical protein; hypothetical protein 4133643 4658842 Sputw3181_3615 Shewanella sp. W3-18-1 hypothetical protein YP_964978.1 4133041 R 351745 CDS YP_964979.1 120600405 4658910 complement(4133640..4134518) 1 NC_008750.1 KEGG: son:SO4114.2 hypothetical biogenesis protein MshI; biogenesis protein MshI 4134518 4658910 Sputw3181_3616 Shewanella sp. W3-18-1 biogenesis protein MshI YP_964979.1 4133640 R 351745 CDS YP_964980.1 120600406 4659668 complement(4134744..4136648) 1 NC_008750.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 4136648 4659668 Sputw3181_3617 Shewanella sp. W3-18-1 regulatory protein CsrD YP_964980.1 4134744 R 351745 CDS YP_964981.1 120600407 4659158 complement(4136835..4138079) 1 NC_008750.1 PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: shm:Shewmr7_0460 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); malate dehydrogenase 4138079 4659158 Sputw3181_3618 Shewanella sp. W3-18-1 malate dehydrogenase YP_964981.1 4136835 R 351745 CDS YP_964982.2 161936274 4659003 complement(4138593..4138805) 1 NC_008750.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 4138805 rpmE 4659003 rpmE Shewanella sp. W3-18-1 50S ribosomal protein L31 YP_964982.2 4138593 R 351745 CDS YP_964983.1 120600409 4659267 complement(4138984..4139886) 1 NC_008750.1 KEGG: son:SO4121 hypothetical protein; hypothetical protein 4139886 4659267 Sputw3181_3620 Shewanella sp. W3-18-1 hypothetical protein YP_964983.1 4138984 R 351745 CDS YP_964984.1 120600410 4659345 4139955..4142150 1 NC_008750.1 KEGG: she:Shewmr4_3495 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; primosomal protein N' 4142150 4659345 Sputw3181_3621 Shewanella sp. W3-18-1 primosomal protein N' YP_964984.1 4139955 D 351745 CDS YP_964985.1 120600411 4659402 4142261..4144006 1 NC_008750.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 4144006 argS 4659402 argS Shewanella sp. W3-18-1 arginyl-tRNA synthetase YP_964985.1 4142261 D 351745 CDS YP_964986.1 120600412 4659454 4144010..4144702 1 NC_008750.1 PFAM: Sporulation domain protein; KEGG: son:SO4124 cell division protein FtsN, putative; sporulation domain-containing protein 4144702 4659454 Sputw3181_3623 Shewanella sp. W3-18-1 sporulation domain-containing protein YP_964986.1 4144010 D 351745 CDS YP_964987.1 120600413 4659469 4144997..4145221 1 NC_008750.1 KEGG: son:SO4126 hypothetical protein; hypothetical protein 4145221 4659469 Sputw3181_3624 Shewanella sp. W3-18-1 hypothetical protein YP_964987.1 4144997 D 351745 CDS YP_964988.1 120600414 4659681 complement(4145412..4146356) 1 NC_008750.1 PFAM: band 7 protein; KEGG: son:SO4128 SPFH domain/Band 7 family protein; hypothetical protein 4146356 4659681 Sputw3181_3625 Shewanella sp. W3-18-1 hypothetical protein YP_964988.1 4145412 R 351745 CDS YP_964989.1 120600415 4659686 complement(4146356..4147291) 1 NC_008750.1 PFAM: band 7 protein; KEGG: son:SO4129 SPFH domain/Band 7 family protein; hypothetical protein 4147291 4659686 Sputw3181_3626 Shewanella sp. W3-18-1 hypothetical protein YP_964989.1 4146356 R 351745 CDS YP_964990.1 120600416 4659590 complement(4147303..4147773) 1 NC_008750.1 PFAM: protein of unknown function DUF107; KEGG: shm:Shewmr7_0449 protein of unknown function DUF107; hypothetical protein 4147773 4659590 Sputw3181_3627 Shewanella sp. W3-18-1 hypothetical protein YP_964990.1 4147303 R 351745 CDS YP_964991.1 120600417 4659977 4148253..4149005 1 NC_008750.1 KEGG: shm:Shewmr7_0448 hypothetical protein; hypothetical protein 4149005 4659977 Sputw3181_3628 Shewanella sp. W3-18-1 hypothetical protein YP_964991.1 4148253 D 351745 CDS YP_964992.1 120600418 4660077 complement(4149108..4149866) 1 NC_008750.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4149866 4660077 Sputw3181_3629 Shewanella sp. W3-18-1 uridine phosphorylase YP_964992.1 4149108 R 351745 CDS YP_964993.1 120600419 4660242 4150402..4150614 1 NC_008750.1 PFAM: protein of unknown function DUF465; KEGG: son:SO4134 hypothetical protein; hypothetical protein 4150614 4660242 Sputw3181_3630 Shewanella sp. W3-18-1 hypothetical protein YP_964993.1 4150402 D 351745 CDS YP_964994.1 120600420 4661041 complement(4150677..4151852) 1 NC_008750.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: son:SO4136 decarboxylase, pyridoxal-dependent; diaminopimelate decarboxylase 4151852 4661041 Sputw3181_3631 Shewanella sp. W3-18-1 diaminopimelate decarboxylase YP_964994.1 4150677 R 351745 CDS YP_964995.1 120600421 4660447 complement(4152196..4152675) 1 NC_008750.1 KEGG: shm:Shewmr7_0444 hypothetical protein; hypothetical protein 4152675 4660447 Sputw3181_3632 Shewanella sp. W3-18-1 hypothetical protein YP_964995.1 4152196 R 351745 CDS YP_964996.1 120600422 4660529 4152845..4153681 1 NC_008750.1 PFAM: MscS Mechanosensitive ion channel; KEGG: she:Shewmr4_3509 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4153681 4660529 Sputw3181_3633 Shewanella sp. W3-18-1 mechanosensitive ion channel protein MscS YP_964996.1 4152845 D 351745 CDS YP_964997.1 120600423 4660553 4153798..4155336 1 NC_008750.1 KEGG: son:SO4139 hypothetical protein; hypothetical protein 4155336 4660553 Sputw3181_3634 Shewanella sp. W3-18-1 hypothetical protein YP_964997.1 4153798 D 351745 CDS YP_964998.1 120600424 4660581 4155536..4156330 1 NC_008750.1 KEGG: pat:Patl_1924 hypothetical protein; hypothetical protein 4156330 4660581 Sputw3181_3635 Shewanella sp. W3-18-1 hypothetical protein YP_964998.1 4155536 D 351745 CDS YP_964999.1 120600425 4660651 4156522..4157679 1 NC_008750.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: son:SO4150 transporter, putative; xanthine/uracil/vitamin C permease 4157679 4660651 Sputw3181_3636 Shewanella sp. W3-18-1 xanthine/uracil/vitamin C permease YP_964999.1 4156522 D 351745 CDS YP_965000.1 120600426 4660718 complement(4157709..4159517) 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_3516 histidine kinase; histidine kinase 4159517 4660718 Sputw3181_3637 Shewanella sp. W3-18-1 histidine kinase YP_965000.1 4157709 R 351745 CDS YP_965001.1 120600427 4660740 4159781..4160383 1 NC_008750.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: shm:Shewmr7_0436 two component transcriptional regulator, LuxR family; response regulator receiver protein 4160383 4660740 Sputw3181_3638 Shewanella sp. W3-18-1 response regulator receiver protein YP_965001.1 4159781 D 351745 CDS YP_965002.1 120600428 4660760 4160746..4161027 1 NC_008750.1 KEGG: she:Shewmr4_3518 hypothetical protein; hypothetical protein 4161027 4660760 Sputw3181_3639 Shewanella sp. W3-18-1 hypothetical protein YP_965002.1 4160746 D 351745 CDS YP_965003.1 120600429 4660865 4161038..4161589 1 NC_008750.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: lpn:lpg1988 dihydrofolate reductase; deaminase-reductase domain-containing protein 4161589 4660865 Sputw3181_3640 Shewanella sp. W3-18-1 deaminase-reductase domain-containing protein YP_965003.1 4161038 D 351745 CDS YP_965004.1 120600430 4660930 4161755..4162333 1 NC_008750.1 KEGG: son:SO4159 hypothetical protein; hypothetical protein 4162333 4660930 Sputw3181_3641 Shewanella sp. W3-18-1 hypothetical protein YP_965004.1 4161755 D 351745 CDS YP_965005.1 120600431 4661593 4162358..4163008 1 NC_008750.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4163008 4661593 Sputw3181_3642 Shewanella sp. W3-18-1 ATP-dependent protease peptidase subunit YP_965005.1 4162358 D 351745 CDS YP_965006.1 120600432 4661118 4163028..4164356 1 NC_008750.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4164356 hslU 4661118 hslU Shewanella sp. W3-18-1 ATP-dependent protease ATP-binding subunit HslU YP_965006.1 4163028 D 351745 CDS YP_965007.1 120600433 4661082 4164563..4164949 1 NC_008750.1 PFAM: protein of unknown function DUF971; KEGG: she:Shewmr4_3523 protein of unknown function DUF971; hypothetical protein 4164949 4661082 Sputw3181_3644 Shewanella sp. W3-18-1 hypothetical protein YP_965007.1 4164563 D 351745 CDS YP_965008.1 120600434 4661047 4165048..4165635 1 NC_008750.1 KEGG: shm:Shewmr7_0431 hypothetical protein; hypothetical protein 4165635 4661047 Sputw3181_3645 Shewanella sp. W3-18-1 hypothetical protein YP_965008.1 4165048 D 351745 CDS YP_965009.1 120600435 4661822 4165903..4167516 1 NC_008750.1 PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: shm:Shewmr7_0429 deoxyribodipyrimidine photolyase-related protein; deoxyribodipyrimidine photolyase-like protein 4167516 4661822 Sputw3181_3646 Shewanella sp. W3-18-1 deoxyribodipyrimidine photolyase-like protein YP_965009.1 4165903 D 351745 CDS YP_965010.1 120600436 4661791 4167560..4168267 1 NC_008750.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: she:Shewmr4_3527 short-chain dehydrogenase/reductase SDR; C factor cell-cell signaling protein 4168267 4661791 Sputw3181_3647 Shewanella sp. W3-18-1 C factor cell-cell signaling protein YP_965010.1 4167560 D 351745 CDS YP_965011.1 120600437 4661689 complement(4168316..4168792) 1 NC_008750.1 KEGG: she:Shewmr4_3528 hypothetical protein; hypothetical protein 4168792 4661689 Sputw3181_3648 Shewanella sp. W3-18-1 hypothetical protein YP_965011.1 4168316 R 351745 CDS YP_965012.1 120600438 4661637 complement(4168824..4169375) 1 NC_008750.1 PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: she:Shewmr4_3529 response regulator receiver protein; two component Fis family transcriptional regulator 4169375 4661637 Sputw3181_3649 Shewanella sp. W3-18-1 two component Fis family transcriptional regulator YP_965012.1 4168824 R 351745 CDS YP_965013.1 120600439 4661662 complement(4169372..4170676) 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_3530 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4170676 4661662 Sputw3181_3650 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_965013.1 4169372 R 351745 CDS YP_965014.1 120600440 4661643 complement(4170791..4171708) 1 NC_008750.1 PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_0418 pseudouridine synthase; pseudouridine synthase 4171708 4661643 Sputw3181_3651 Shewanella sp. W3-18-1 pseudouridine synthase YP_965014.1 4170791 R 351745 CDS YP_965015.1 120600441 4661584 complement(4171762..4172337) 1 NC_008750.1 KEGG: son:SO4182 ATP-dependent protease La (LON) domain protein, putative; ATP-dependent protease La 4172337 4661584 Sputw3181_3652 Shewanella sp. W3-18-1 ATP-dependent protease La YP_965015.1 4171762 R 351745 CDS YP_965016.1 120600442 4661574 4172590..4175043 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_3540 TonB-dependent receptor; TonB-dependent receptor 4175043 4661574 Sputw3181_3653 Shewanella sp. W3-18-1 TonB-dependent receptor YP_965016.1 4172590 D 351745 CDS YP_965017.1 120600443 4661470 4175179..4175640 1 NC_008750.1 PFAM: conserved hypothetical protein 22; KEGG: shm:Shewmr7_0414 conserved hypothetical protein 22; hypothetical protein 4175640 4661470 Sputw3181_3654 Shewanella sp. W3-18-1 hypothetical protein YP_965017.1 4175179 D 351745 CDS YP_965018.1 120600444 4661387 4175777..4176697 1 NC_008750.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 4176697 4661387 Sputw3181_3655 Shewanella sp. W3-18-1 putative manganese-dependent inorganic pyrophosphatase YP_965018.1 4175777 D 351745 CDS YP_965019.1 120600445 4661162 4176889..4177503 1 NC_008750.1 KEGG: shm:Shewmr7_0412 DedA family protein; DedA family protein 4177503 4661162 Sputw3181_3656 Shewanella sp. W3-18-1 DedA family protein YP_965019.1 4176889 D 351745 CDS YP_965020.1 120600446 4661250 4177709..4179337 1 NC_008750.1 PFAM: chemotaxis sensory transducer; KEGG: ilo:IL1068 methyl-accepting chemotaxis protein with ligand-binding sensor domain and HAMP domain; methyl-accepting chemotaxis sensory transducer 4179337 4661250 Sputw3181_3657 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_965020.1 4177709 D 351745 CDS YP_965021.1 120600447 4661222 complement(4179445..4180863) 1 NC_008750.1 KEGG: she:Shewmr4_3545 hypothetical protein; hypothetical protein 4180863 4661222 Sputw3181_3658 Shewanella sp. W3-18-1 hypothetical protein YP_965021.1 4179445 R 351745 CDS YP_965022.1 120600448 4660776 complement(4181005..4182045) 1 NC_008750.1 KEGG: shm:Shewmr7_0410 hypothetical protein; hypothetical protein 4182045 4660776 Sputw3181_3659 Shewanella sp. W3-18-1 hypothetical protein YP_965022.1 4181005 R 351745 CDS YP_965023.1 120600449 4660747 complement(4182119..4182631) 1 NC_008750.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO4195 PAP2 family protein; PA-phosphatase-like phosphoesterase 4182631 4660747 Sputw3181_3660 Shewanella sp. W3-18-1 PA-phosphatase-like phosphoesterase YP_965023.1 4182119 R 351745 CDS YP_965024.1 120600450 4660702 complement(4182992..4183246) 1 NC_008750.1 KEGG: shm:Shewmr7_0408 hypothetical protein; hypothetical protein 4183246 4660702 Sputw3181_3661 Shewanella sp. W3-18-1 hypothetical protein YP_965024.1 4182992 R 351745 CDS YP_965025.1 120600451 4660397 4183565..4184050 1 NC_008750.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4184050 4660397 Sputw3181_3662 Shewanella sp. W3-18-1 ribonuclease activity regulator protein RraA YP_965025.1 4183565 D 351745 CDS YP_965026.1 120600452 4660662 4184178..4185242 1 NC_008750.1 PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: she:Shewmr4_3550 arginase/agmatinase/formiminoglutamase; arginase/agmatinase/formiminoglutamase 4185242 4660662 Sputw3181_3663 Shewanella sp. W3-18-1 arginase/agmatinase/formiminoglutamase YP_965026.1 4184178 D 351745 CDS YP_965027.1 120600453 4660596 4185487..4186242 1 NC_008750.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4199 ubiquinone/menaquinone biosynthesis methlytransferase UbiE; ubiquinone/menaquinone biosynthesis methyltransferase 4186242 4660596 Sputw3181_3664 Shewanella sp. W3-18-1 ubiquinone/menaquinone biosynthesis methyltransferase YP_965027.1 4185487 D 351745 CDS YP_965028.1 120600454 4660372 4186242..4186862 1 NC_008750.1 PFAM: protein of unknown function DUF1243; KEGG: son:SO4200 conserved hypothetical protein; hypothetical protein 4186862 4660372 Sputw3181_3665 Shewanella sp. W3-18-1 hypothetical protein YP_965028.1 4186242 D 351745 CDS YP_965029.1 120600455 4660551 4186859..4188508 1 NC_008750.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: shm:Shewmr7_0403 2-polyprenylphenol 6-hydroxylase; 2-polyprenylphenol 6-hydroxylase 4188508 4660551 Sputw3181_3666 Shewanella sp. W3-18-1 2-polyprenylphenol 6-hydroxylase YP_965029.1 4186859 D 351745 CDS YP_965030.1 120600456 4660534 4188568..4188807 1 NC_008750.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: shm:Shewmr7_0402 twin-arginine translocation protein, TatA/E family subunit; twin arginine-targeting protein translocase 4188807 4660534 Sputw3181_3667 Shewanella sp. W3-18-1 twin arginine-targeting protein translocase YP_965030.1 4188568 D 351745 CDS YP_965031.1 120600457 4660510 4188815..4189291 1 NC_008750.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: shm:Shewmr7_0401 twin-arginine translocation protein, TatB subunit; twin-arginine translocation protein subunit TatB 4189291 4660510 Sputw3181_3668 Shewanella sp. W3-18-1 twin-arginine translocation protein subunit TatB YP_965031.1 4188815 D 351745 CDS YP_965032.1 120600458 4660314 4189295..4190044 1 NC_008750.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: she:Shewmr4_3556 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 4190044 4660314 Sputw3181_3669 Shewanella sp. W3-18-1 Sec-independent protein translocase subunit TatC YP_965032.1 4189295 D 351745 CDS YP_965033.1 120600459 4659839 4190091..4190618 1 NC_008750.1 KEGG: son:SO4205 hypothetical protein; hypothetical protein 4190618 4659839 Sputw3181_3670 Shewanella sp. W3-18-1 hypothetical protein YP_965033.1 4190091 D 351745 CDS YP_965034.1 120600460 4660050 4190618..4191421 1 NC_008750.1 PFAM: TatD-related deoxyribonuclease; KEGG: shm:Shewmr7_0398 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease 4191421 4660050 Sputw3181_3671 Shewanella sp. W3-18-1 TatD-related deoxyribonuclease YP_965034.1 4190618 D 351745 CDS YP_965035.1 120600461 4660005 4191414..4193288 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: son:SO4207 GGDEF domain protein; diguanylate cyclase 4193288 4660005 Sputw3181_3672 Shewanella sp. W3-18-1 diguanylate cyclase YP_965035.1 4191414 D 351745 CDS YP_965036.1 120600462 4659987 4193298..4194305 1 NC_008750.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 4194305 4659987 Sputw3181_3673 Shewanella sp. W3-18-1 delta-aminolevulinic acid dehydratase YP_965036.1 4193298 D 351745 CDS YP_965037.1 120600463 4659802 4194340..4194678 1 NC_008750.1 KEGG: sfr:Sfri_1559 ISSod10, transposase OrfB; hypothetical protein 4194678 4659802 Sputw3181_3674 Shewanella sp. W3-18-1 hypothetical protein YP_965037.1 4194340 D 351745 CDS YP_965038.1 120600464 4658539 4201602..4202063 1 NC_008750.1 PFAM: RNP-1 like RNA-binding protein; KEGG: shm:Shewmr7_0175 RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein 4202063 4658539 Sputw3181_3675 Shewanella sp. W3-18-1 RNP-1 like RNA-binding protein YP_965038.1 4201602 D 351745 CDS YP_965039.1 120600465 4659789 complement(4202085..4202891) 1 NC_008750.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 4202891 4659789 Sputw3181_3676 Shewanella sp. W3-18-1 glutamate racemase YP_965039.1 4202085 R 351745 CDS YP_965040.1 120600466 4659778 4203127..4204224 1 NC_008750.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 4204224 4659778 Sputw3181_3677 Shewanella sp. W3-18-1 tRNA (uracil-5-)-methyltransferase YP_965040.1 4203127 D 351745 CDS YP_965041.1 120600467 4659632 complement(4204292..4204906) 1 NC_008750.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 4204906 4659632 Sputw3181_3678 Shewanella sp. W3-18-1 DNA-binding transcriptional repressor FabR YP_965041.1 4204292 R 351745 CDS YP_965042.1 120600468 4659685 4205051..4206157 1 NC_008750.1 PFAM: fatty acid desaturase; KEGG: son:SO0197 fatty acid desaturase, family 1; stearoyl-CoA 9-desaturase 4206157 4659685 Sputw3181_3679 Shewanella sp. W3-18-1 stearoyl-CoA 9-desaturase YP_965042.1 4205051 D 351745 CDS YP_965043.1 120600469 4659855 4206253..4207311 1 NC_008750.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 4207311 4659855 Sputw3181_3680 Shewanella sp. W3-18-1 selenophosphate synthetase YP_965043.1 4206253 D 351745 CDS YP_965044.1 120600470 4661454 4207311..4208420 1 NC_008750.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 4208420 4661454 Sputw3181_3681 Shewanella sp. W3-18-1 tRNA 2-selenouridine synthase YP_965044.1 4207311 D 351745 CDS YP_965045.1 120600471 4659392 complement(4208475..4210337) 1 NC_008750.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0194 acyltransferase family protein; phospholipid/glycerol acyltransferase 4210337 4659392 Sputw3181_3682 Shewanella sp. W3-18-1 phospholipid/glycerol acyltransferase YP_965045.1 4208475 R 351745 CDS YP_965046.1 120600472 4659381 complement(4210328..4210939) 1 NC_008750.1 PFAM: regulatory protein, TetR; KEGG: she:Shewmr4_0172 transcriptional regulator, TetR family; TetR family transcriptional regulator 4210939 4659381 Sputw3181_3683 Shewanella sp. W3-18-1 TetR family transcriptional regulator YP_965046.1 4210328 R 351745 CDS YP_965047.1 120600473 4659363 complement(4211257..4211700) 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_0166 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4211700 4659363 Sputw3181_3684 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_965047.1 4211257 R 351745 CDS YP_965048.1 120600474 4659336 complement(4211708..4212520) 1 NC_008750.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: shm:Shewmr7_0165 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 4212520 4659336 Sputw3181_3685 Shewanella sp. W3-18-1 3'(2'),5'-bisphosphate nucleotidase YP_965048.1 4211708 R 351745 CDS YP_965049.1 120600475 4659106 complement(4212592..4213143) 1 NC_008750.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 4213143 nudE 4659106 nudE Shewanella sp. W3-18-1 ADP-ribose diphosphatase NudE YP_965049.1 4212592 R 351745 CDS YP_965050.1 120600476 4659104 complement(4213381..4220814) 1 NC_008750.1 PFAM: Fibronectin, type III domain protein; Ig family protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: son:SO0189 fibronectin type III domain protein; fibronectin type III domain-containing protein 4220814 4659104 Sputw3181_3687 Shewanella sp. W3-18-1 fibronectin type III domain-containing protein YP_965050.1 4213381 R 351745 CDS YP_965051.1 120600477 4659098 complement(4220877..4221476) 1 NC_008750.1 PFAM: phage Tail Collar domain protein; KEGG: sdn:Sden_3729 phage tail collar; phage tail collar domain-containing protein 4221476 4659098 Sputw3181_3688 Shewanella sp. W3-18-1 phage tail collar domain-containing protein YP_965051.1 4220877 R 351745 CDS YP_965052.1 120600478 4659251 complement(4221702..4222199) 1 NC_008750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_06057 acetyltransferase; N-acetyltransferase GCN5 4222199 4659251 Sputw3181_3689 Shewanella sp. W3-18-1 N-acetyltransferase GCN5 YP_965052.1 4221702 R 351745 CDS YP_965053.1 120600479 4659221 complement(4222186..4223361) 1 NC_008750.1 KEGG: son:SO0181 hypothetical protein; hypothetical protein 4223361 4659221 Sputw3181_3690 Shewanella sp. W3-18-1 hypothetical protein YP_965053.1 4222186 R 351745 CDS YP_965054.1 120600480 4659044 complement(4223361..4224443) 1 NC_008750.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: son:SO0180 hypothetical protein; phytanoyl-CoA dioxygenase 4224443 4659044 Sputw3181_3691 Shewanella sp. W3-18-1 phytanoyl-CoA dioxygenase YP_965054.1 4223361 R 351745 CDS YP_965055.1 120600481 4658873 complement(4224421..4225008) 1 NC_008750.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: son:SO0179 hypothetical protein; aspartyl/asparaginyl beta-hydroxylase 4225008 4658873 Sputw3181_3692 Shewanella sp. W3-18-1 aspartyl/asparaginyl beta-hydroxylase YP_965055.1 4224421 R 351745 CDS YP_965056.1 120600482 4658854 4225103..4225804 1 NC_008750.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shm:Shewmr7_0162 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase 4225804 4658854 Sputw3181_3693 Shewanella sp. W3-18-1 HAD family hydrolase YP_965056.1 4225103 D 351745 CDS YP_965057.1 120600483 4658612 complement(4225838..4226599) 1 NC_008750.1 PFAM: type II secretion system protein N; KEGG: shm:Shewmr7_0161 type II secretion system protein N; type II secretion system protein N 4226599 4658612 Sputw3181_3694 Shewanella sp. W3-18-1 type II secretion system protein N YP_965057.1 4225838 R 351745 CDS YP_965058.1 120600484 4658808 complement(4226610..4227086) 1 NC_008750.1 PFAM: General secretion pathway M protein; KEGG: son:SO0175 general secretion pathway protein M; general secretion pathway M protein 4227086 4658808 Sputw3181_3695 Shewanella sp. W3-18-1 general secretion pathway M protein YP_965058.1 4226610 R 351745 CDS YP_965059.1 120600485 4658595 complement(4227088..4228275) 1 NC_008750.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: she:Shewmr4_0164 general secretion pathway protein L; general secretion pathway protein L 4228275 4658595 Sputw3181_3696 Shewanella sp. W3-18-1 general secretion pathway protein L YP_965059.1 4227088 R 351745 CDS YP_965060.1 120600486 4658770 complement(4228326..4229330) 1 NC_008750.1 PFAM: General secretion pathway protein K; KEGG: she:Shewmr4_0163 general secretion pathway protein K; general secretion pathway protein K 4229330 4658770 Sputw3181_3697 Shewanella sp. W3-18-1 general secretion pathway protein K YP_965060.1 4228326 R 351745 CDS YP_965061.1 120600487 4658583 complement(4229327..4230085) 1 NC_008750.1 TIGRFAM: general secretion pathway protein J; KEGG: son:SO0172 general secretion pathway protein J; general secretion pathway protein J 4230085 4658583 Sputw3181_3698 Shewanella sp. W3-18-1 general secretion pathway protein J YP_965061.1 4229327 R 351745 CDS YP_965062.1 120600488 4658757 complement(4230066..4230434) 1 NC_008750.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: shm:Shewmr7_0156 general secretion pathway protein I; general secretion pathway protein I 4230434 4658757 Sputw3181_3699 Shewanella sp. W3-18-1 general secretion pathway protein I YP_965062.1 4230066 R 351745 CDS YP_965063.1 120600489 4658561 complement(4230421..4230993) 1 NC_008750.1 TIGRFAM: general secretion pathway protein H; KEGG: son:SO0170 general secretion pathway protein H; general secretion pathway protein H 4230993 4658561 Sputw3181_3700 Shewanella sp. W3-18-1 general secretion pathway protein H YP_965063.1 4230421 R 351745 CDS YP_965064.1 120600490 4658555 complement(4230995..4231429) 1 NC_008750.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: shm:Shewmr7_0154 general secretion pathway protein G; general secretion pathway protein G 4231429 4658555 Sputw3181_3701 Shewanella sp. W3-18-1 general secretion pathway protein G YP_965064.1 4230995 R 351745 CDS YP_965065.1 120600491 4658542 complement(4231493..4232716) 1 NC_008750.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: son:SO0168 general secretion pathway protein F; general secretion pathway protein F 4232716 4658542 Sputw3181_3702 Shewanella sp. W3-18-1 general secretion pathway protein F YP_965065.1 4231493 R 351745 CDS YP_965066.1 120600492 4658688 complement(4232720..4234285) 1 NC_008750.1 KEGG: shm:Shewmr7_0152 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E 4234285 4658688 Sputw3181_3703 Shewanella sp. W3-18-1 general secretory pathway protein E YP_965066.1 4232720 R 351745 CDS YP_965067.1 120600493 4658457 complement(4234278..4236395) 1 NC_008750.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: shm:Shewmr7_0151 general secretion pathway protein D; general secretion pathway protein D 4236395 4658457 Sputw3181_3704 Shewanella sp. W3-18-1 general secretion pathway protein D YP_965067.1 4234278 R 351745 CDS YP_965068.1 120600494 4658670 complement(4236420..4237346) 1 NC_008750.1 TIGRFAM: general secretion pathway protein C; KEGG: she:Shewmr4_0155 general secretion pathway protein C; general secretion pathway protein C 4237346 4658670 Sputw3181_3705 Shewanella sp. W3-18-1 general secretion pathway protein C YP_965068.1 4236420 R 351745 CDS YP_965069.1 120600495 4658638 4237599..4237997 1 NC_008750.1 PFAM: RNA-binding S4 domain protein; KEGG: shm:Shewmr7_0149 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 4237997 4658638 Sputw3181_3706 Shewanella sp. W3-18-1 RNA-binding S4 domain-containing protein YP_965069.1 4237599 D 351745 CDS YP_965070.1 120600496 4658159 4238013..4238873 1 NC_008750.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 4238873 hslO 4658159 hslO Shewanella sp. W3-18-1 Hsp33-like chaperonin YP_965070.1 4238013 D 351745 CDS YP_965071.1 120600497 4661101 4239076..4240617 1 NC_008750.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 4240617 4661101 Sputw3181_3708 Shewanella sp. W3-18-1 phosphoenolpyruvate carboxykinase YP_965071.1 4239076 D 351745 CDS YP_965072.1 120600498 4658107 4240818..4241369 1 NC_008750.1 KEGG: tde:TDE0520 hypothetical protein; hypothetical protein 4241369 4658107 Sputw3181_3709 Shewanella sp. W3-18-1 hypothetical protein YP_965072.1 4240818 D 351745 CDS YP_965073.1 120600499 4657716 4241381..4241833 1 NC_008750.1 hypothetical protein 4241833 4657716 Sputw3181_3710 Shewanella sp. W3-18-1 hypothetical protein YP_965073.1 4241381 D 351745 CDS YP_965074.1 120600500 4658074 4241998..4242885 1 NC_008750.1 KEGG: son:SOA0067 hypothetical protein; hypothetical protein 4242885 4658074 Sputw3181_3711 Shewanella sp. W3-18-1 hypothetical protein YP_965074.1 4241998 D 351745 CDS YP_965075.1 120600501 4658699 4244214..4244993 1 NC_008750.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: she:Shewmr4_0398 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein 4244993 4658699 Sputw3181_3715 Shewanella sp. W3-18-1 hemerythrin HHE cation binding domain-containing protein YP_965075.1 4244214 D 351745 CDS YP_965076.1 120600502 4658004 4245115..4245618 1 NC_008750.1 PFAM: AAA-4 family protein; KEGG: shm:Shewmr7_3628 putative transcriptional regulator; putative transcriptional regulator 4245618 4658004 Sputw3181_3716 Shewanella sp. W3-18-1 putative transcriptional regulator YP_965076.1 4245115 D 351745 CDS YP_965077.1 120600503 4657962 complement(4245626..4246204) 1 NC_008750.1 PFAM: HupE/UreJ protein; KEGG: she:Shewmr4_0396 HupE/UreJ protein; HupE/UreJ protein 4246204 4657962 Sputw3181_3717 Shewanella sp. W3-18-1 HupE/UreJ protein YP_965077.1 4245626 R 351745 CDS YP_965078.1 120600504 4657687 complement(4246350..4247072) 1 NC_008750.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: she:Shewmr4_0395 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 4247072 4657687 Sputw3181_3718 Shewanella sp. W3-18-1 HAD family hydrolase YP_965078.1 4246350 R 351745 CDS YP_965079.1 120600505 4657679 complement(4247072..4247980) 1 NC_008750.1 TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO4306 integrase/recombinase XerC; tyrosine recombinase XerC 4247980 4657679 Sputw3181_3719 Shewanella sp. W3-18-1 tyrosine recombinase XerC YP_965079.1 4247072 R 351745 CDS YP_965080.1 120600506 4657677 complement(4248063..4248698) 1 NC_008750.1 PFAM: protein of unknown function DUF484; KEGG: shm:Shewmr7_3632 protein of unknown function DUF484; hypothetical protein 4248698 4657677 Sputw3181_3720 Shewanella sp. W3-18-1 hypothetical protein YP_965080.1 4248063 R 351745 CDS YP_965081.1 120600507 4657837 complement(4248695..4249522) 1 NC_008750.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4249522 dapF 4657837 dapF Shewanella sp. W3-18-1 diaminopimelate epimerase YP_965081.1 4248695 R 351745 CDS YP_965082.1 120600508 4657805 complement(4249599..4250843) 1 NC_008750.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: shm:Shewmr7_3634 diaminopimelate decarboxylase; diaminopimelate decarboxylase 4250843 4657805 Sputw3181_3722 Shewanella sp. W3-18-1 diaminopimelate decarboxylase YP_965082.1 4249599 R 351745 CDS YP_965083.1 120600509 4661716 complement(4250895..4251101) 1 NC_008750.1 KEGG: shm:Shewmr7_3635 hypothetical protein; hypothetical protein 4251101 4661716 Sputw3181_3723 Shewanella sp. W3-18-1 hypothetical protein YP_965083.1 4250895 R 351745 CDS YP_965084.1 120600510 4657764 4251169..4251498 1 NC_008750.1 PFAM: Frataxin family protein; KEGG: shm:Shewmr7_3636 frataxin family protein; frataxin family protein 4251498 4657764 Sputw3181_3724 Shewanella sp. W3-18-1 frataxin family protein YP_965084.1 4251169 D 351745 CDS YP_965085.1 120600511 4661169 complement(4251553..4253967) 1 NC_008750.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4253967 cyaA 4661169 cyaA Shewanella sp. W3-18-1 adenylate cyclase YP_965085.1 4251553 R 351745 CDS YP_965086.1 120600512 4661744 4254170..4255102 1 NC_008750.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4255102 hemC 4661744 hemC Shewanella sp. W3-18-1 porphobilinogen deaminase YP_965086.1 4254170 D 351745 CDS YP_965087.1 120600513 4657797 4255107..4255847 1 NC_008750.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: son:SO4314 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 4255847 4657797 Sputw3181_3727 Shewanella sp. W3-18-1 uroporphyrinogen III synthase HEM4 YP_965087.1 4255107 D 351745 CDS YP_965088.1 120600514 4657886 4255908..4257107 1 NC_008750.1 PFAM: protein of unknown function DUF513, hemX; KEGG: shm:Shewmr7_3640 protein of unknown function DUF513, HemX; hypothetical protein 4257107 4657886 Sputw3181_3728 Shewanella sp. W3-18-1 hypothetical protein YP_965088.1 4255908 D 351745 CDS YP_965089.1 120600515 4657888 4257104..4258270 1 NC_008750.1 PFAM: HemY domain protein; KEGG: she:Shewmr4_0385 HemY domain protein; HemY domain-containing protein 4258270 4657888 Sputw3181_3729 Shewanella sp. W3-18-1 HemY domain-containing protein YP_965089.1 4257104 D 351745 CDS YP_965090.1 120600516 4658006 4258679..4266373 1 NC_008750.1 TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; KEGG: shm:Shewmr7_3642 putative outer membrane adhesin like protein; outer membrane adhesin like protein 4266373 4658006 Sputw3181_3730 Shewanella sp. W3-18-1 outer membrane adhesin like protein YP_965090.1 4258679 D 351745 CDS YP_965091.1 120600517 4658696 complement(4266689..4267939) 1 NC_008750.1 PFAM: transposase, IS4 family protein; KEGG: sak:SAK_2050 IS10R, transposase; transposase, IS4 family protein 4267939 4658696 Sputw3181_3732 Shewanella sp. W3-18-1 transposase, IS4 family protein YP_965091.1 4266689 R 351745 CDS YP_965092.1 120600518 4658052 4269974..4271356 1 NC_008750.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_3644 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein 4271356 4658052 Sputw3181_3733 Shewanella sp. W3-18-1 HlyD family type I secretion membrane fusion protein YP_965092.1 4269974 D 351745 CDS YP_965093.1 120600519 4658232 4271383..4272798 1 NC_008750.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: shm:Shewmr7_3645 type I secretion outer membrane protein, TolC family; TolC family type I secretion outer membrane protein 4272798 4658232 Sputw3181_3734 Shewanella sp. W3-18-1 TolC family type I secretion outer membrane protein YP_965093.1 4271383 D 351745 CDS YP_965094.1 120600520 4658240 4272795..4273403 1 NC_008750.1 PFAM: OmpA/MotB domain protein; KEGG: she:Shewmr4_0380 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 4273403 4658240 Sputw3181_3735 Shewanella sp. W3-18-1 OmpA/MotB domain-containing protein YP_965094.1 4272795 D 351745 CDS YP_965095.1 120600521 4658246 4273419..4274129 1 NC_008750.1 KEGG: shm:Shewmr7_3647 hypothetical protein; hypothetical protein 4274129 4658246 Sputw3181_3736 Shewanella sp. W3-18-1 hypothetical protein YP_965095.1 4273419 D 351745 CDS YP_965096.1 120600522 4658258 4274139..4276058 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: shm:Shewmr7_3648 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 4276058 4658258 Sputw3181_3737 Shewanella sp. W3-18-1 diguanylate cyclase/phosphodiesterase YP_965096.1 4274139 D 351745 CDS YP_965097.1 120600523 4658643 4277162..4279795 1 NC_008750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: she:Shewmr4_0377 diguanylate cyclase/phosphodiesterase with GAF sensor; GAF sensor-containing diguanylate cyclase/phosphodiesterase 4279795 4658643 Sputw3181_3738 Shewanella sp. W3-18-1 GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_965097.1 4277162 D 351745 CDS YP_965098.1 120600524 4658341 complement(4279832..4281844) 1 NC_008750.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: she:Shewmr4_0376 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep 4281844 4658341 Sputw3181_3739 Shewanella sp. W3-18-1 ATP-dependent DNA helicase Rep YP_965098.1 4279832 R 351745 CDS YP_965099.1 120600525 4658454 4282054..4282311 1 NC_008750.1 PFAM: protein of unknown function DUF526; KEGG: son:SO4329 hypothetical protein; hypothetical protein 4282311 4658454 Sputw3181_3740 Shewanella sp. W3-18-1 hypothetical protein YP_965099.1 4282054 D 351745 CDS YP_965100.1 120600526 4658404 4282516..4282872 1 NC_008750.1 KEGG: shm:Shewmr7_3653 hypothetical protein; hypothetical protein 4282872 4658404 Sputw3181_3741 Shewanella sp. W3-18-1 hypothetical protein YP_965100.1 4282516 D 351745 CDS YP_965101.1 120600527 4658816 4283035..4284246 1 NC_008750.1 PFAM: NnrS family protein; KEGG: sfr:Sfri_3037 NnrS family protein; NnrS family protein 4284246 4658816 Sputw3181_3742 Shewanella sp. W3-18-1 NnrS family protein YP_965101.1 4283035 D 351745 CDS YP_965102.1 120600528 4658916 4284230..4285639 1 NC_008750.1 PFAM: cytochrome c552; KEGG: sfr:Sfri_3036 nitrite reductase (cytochrome; ammonia-forming); nitrite reductase 4285639 4658916 Sputw3181_3743 Shewanella sp. W3-18-1 nitrite reductase YP_965102.1 4284230 D 351745 CDS YP_965103.1 120600529 4658935 4286091..4287569 1 NC_008750.1 PFAM: Inner membrane CreD family protein; KEGG: shm:Shewmr7_3656 inner membrane CreD family protein; hypothetical protein 4287569 4658935 Sputw3181_3744 Shewanella sp. W3-18-1 hypothetical protein YP_965103.1 4286091 D 351745 CDS YP_965104.1 120600530 4658622 4287663..4288472 1 NC_008750.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: shm:Shewmr7_3657 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 4288472 4658622 Sputw3181_3745 Shewanella sp. W3-18-1 PA-phosphatase-like phosphoesterase YP_965104.1 4287663 D 351745 CDS YP_965105.1 120600531 4658594 complement(4288666..4289541) 1 NC_008750.1 PFAM: import inner membrane translocase, subunit Tim44; KEGG: son:SO4340 hypothetical protein; import inner membrane translocase subunit Tim44 4289541 4658594 Sputw3181_3746 Shewanella sp. W3-18-1 import inner membrane translocase subunit Tim44 YP_965105.1 4288666 R 351745 CDS YP_965106.1 120600532 4658965 4290256..4291068 1 NC_008750.1 hypothetical protein 4291068 4658965 Sputw3181_3747 Shewanella sp. W3-18-1 hypothetical protein YP_965106.1 4290256 D 351745 CDS YP_965107.1 120600533 4659045 complement(4291693..4292211) 1 NC_008750.1 KEGG: bur:Bcep18194_B1335 hypothetical protein; hypothetical protein 4292211 4659045 Sputw3181_3748 Shewanella sp. W3-18-1 hypothetical protein YP_965107.1 4291693 R 351745 CDS YP_965108.1 120600534 4659031 complement(4292259..4292879) 1 NC_008750.1 hypothetical protein 4292879 4659031 Sputw3181_3749 Shewanella sp. W3-18-1 hypothetical protein YP_965108.1 4292259 R 351745 CDS YP_965109.1 120600535 4659210 complement(4293065..4294198) 1 NC_008750.1 PFAM: aminotransferase, class V; KEGG: son:SO4343 aminotransferase, class V; serine--pyruvate transaminase 4294198 4659210 Sputw3181_3750 Shewanella sp. W3-18-1 serine--pyruvate transaminase YP_965109.1 4293065 R 351745 CDS YP_965110.1 120600536 4659268 complement(4294439..4296049) 1 NC_008750.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4296049 4659268 Sputw3181_3751 Shewanella sp. W3-18-1 threonine dehydratase YP_965110.1 4294439 R 351745 CDS YP_965111.1 120600537 4659387 complement(4296052..4297911) 1 NC_008750.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4297911 4659387 Sputw3181_3752 Shewanella sp. W3-18-1 dihydroxy-acid dehydratase YP_965111.1 4296052 R 351745 CDS YP_965112.1 120600538 4659136 complement(4297969..4298226) 1 NC_008750.1 PFAM: amino acid-binding ACT domain protein; KEGG: shm:Shewmr7_3663 acetolactate synthase small subunit; acetolactate synthase 2 regulatory subunit 4298226 ilvM 4659136 ilvM Shewanella sp. W3-18-1 acetolactate synthase 2 regulatory subunit YP_965112.1 4297969 R 351745 CDS YP_965113.1 120600539 4659451 complement(4298223..4299896) 1 NC_008750.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4299896 4659451 Sputw3181_3754 Shewanella sp. W3-18-1 acetolactate synthase 2 catalytic subunit YP_965113.1 4298223 R 351745 CDS YP_965114.1 120600540 4659450 complement(4300508..4301986) 1 NC_008750.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 4301986 4659450 Sputw3181_3755 Shewanella sp. W3-18-1 ketol-acid reductoisomerase YP_965114.1 4300508 R 351745 CDS YP_965115.1 120600541 4659462 4302183..4303091 1 NC_008750.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4303091 4659462 Sputw3181_3756 Shewanella sp. W3-18-1 DNA-binding transcriptional regulator IlvY YP_965115.1 4302183 D 351745 CDS YP_965116.1 120600542 4659467 complement(4303088..4304404) 1 NC_008750.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: shm:Shewmr7_3667 protein of unknown function DUF21; hypothetical protein 4304404 4659467 Sputw3181_3757 Shewanella sp. W3-18-1 hypothetical protein YP_965116.1 4303088 R 351745 CDS YP_965117.1 120600543 4659496 complement(4304942..4305352) 1 NC_008750.1 PFAM: protein of unknown function UPF0153; KEGG: she:Shewmr4_0357 protein of unknown function UPF0153; hypothetical protein 4305352 4659496 Sputw3181_3758 Shewanella sp. W3-18-1 hypothetical protein YP_965117.1 4304942 R 351745 CDS YP_965118.1 120600544 4659499 4305644..4306171 1 NC_008750.1 PFAM: helix-hairpin-helix motif; KEGG: sdn:Sden_0291 ERCC4; helix-hairpin-helix DNA-binding motif-containing protein 4306171 4659499 Sputw3181_3759 Shewanella sp. W3-18-1 helix-hairpin-helix DNA-binding motif-containing protein YP_965118.1 4305644 D 351745 CDS YP_965119.1 120600545 4659503 complement(4306200..4306955) 1 NC_008750.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 4306955 4659503 Sputw3181_3760 Shewanella sp. W3-18-1 nucleotidase YP_965119.1 4306200 R 351745 CDS YP_965120.1 120600546 4659504 4307181..4308077 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0340 transcriptional regulator, LysR family; LysR family transcriptional regulator 4308077 4659504 Sputw3181_3761 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_965120.1 4307181 D 351745 CDS YP_965121.1 120600547 4659513 4308181..4308657 1 NC_008750.1 KEGG: shm:Shewmr7_0339 hypothetical protein; hypothetical protein 4308657 4659513 Sputw3181_3762 Shewanella sp. W3-18-1 hypothetical protein YP_965121.1 4308181 D 351745 CDS YP_965122.1 120600548 4659543 complement(4308693..4310648) 1 NC_008750.1 KEGG: shm:Shewmr7_0338 hypothetical protein; hypothetical protein 4310648 4659543 Sputw3181_3763 Shewanella sp. W3-18-1 hypothetical protein YP_965122.1 4308693 R 351745 CDS YP_965123.1 120600549 4659856 complement(4310648..4310875) 1 NC_008750.1 PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_0337 transcriptional regulator, XRE family; XRE family transcriptional regulator 4310875 4659856 Sputw3181_3764 Shewanella sp. W3-18-1 XRE family transcriptional regulator YP_965123.1 4310648 R 351745 CDS YP_965124.1 120600550 4660126 complement(4311035..4312150) 1 NC_008750.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: shm:Shewmr7_0336 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 4312150 4660126 Sputw3181_3765 Shewanella sp. W3-18-1 filamentation induced by cAMP protein fic YP_965124.1 4311035 R 351745 CDS YP_965125.1 120600551 4660138 4312463..4313266 1 NC_008750.1 KEGG: son:SO0366 hypothetical protein; hypothetical protein 4313266 4660138 Sputw3181_3766 Shewanella sp. W3-18-1 hypothetical protein YP_965125.1 4312463 D 351745 CDS YP_965126.1 120600552 4660261 complement(4313284..4314381) 1 NC_008750.1 PFAM: aminoglycoside phosphotransferase; KEGG: shm:Shewmr7_0333 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 4314381 4660261 Sputw3181_3767 Shewanella sp. W3-18-1 aminoglycoside phosphotransferase YP_965126.1 4313284 R 351745 CDS YP_965127.1 120600553 4660192 complement(4314374..4315246) 1 NC_008750.1 KEGG: she:Shewmr4_3611 hypothetical protein; hypothetical protein 4315246 4660192 Sputw3181_3768 Shewanella sp. W3-18-1 hypothetical protein YP_965127.1 4314374 R 351745 CDS YP_965128.1 120600554 4660199 complement(4315448..4316977) 1 NC_008750.1 KEGG: shm:Shewmr7_0331 hypothetical protein; hypothetical protein 4316977 4660199 Sputw3181_3769 Shewanella sp. W3-18-1 hypothetical protein YP_965128.1 4315448 R 351745 CDS YP_965129.1 120600555 4660601 4317231..4317854 1 NC_008750.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 4317854 gmk 4660601 gmk Shewanella sp. W3-18-1 guanylate kinase YP_965129.1 4317231 D 351745 CDS YP_965130.1 120600556 4660386 4317913..4318191 1 NC_008750.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 4318191 rpoZ 4660386 rpoZ Shewanella sp. W3-18-1 DNA-directed RNA polymerase subunit omega YP_965130.1 4317913 D 351745 CDS YP_965131.1 120600557 4660732 4318237..4320342 1 NC_008750.1 KEGG: son:SO0359 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 4320342 4660732 Sputw3181_3772 Shewanella sp. W3-18-1 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_965131.1 4318237 D 351745 CDS YP_965132.1 120600558 4660792 4320368..4320751 1 NC_008750.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: son:SO0358 endoribonuclease L-PSP, putative; putative endoribonuclease L-PSP 4320751 4660792 Sputw3181_3773 Shewanella sp. W3-18-1 putative endoribonuclease L-PSP YP_965132.1 4320368 D 351745 CDS YP_965133.1 120600559 4660818 4320991..4322655 1 NC_008750.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0355 AMP-binding protein; AMP-dependent synthetase and ligase 4322655 4660818 Sputw3181_3774 Shewanella sp. W3-18-1 AMP-dependent synthetase and ligase YP_965133.1 4320991 D 351745 CDS YP_965134.1 120600560 4660845 4322836..4323786 1 NC_008750.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: shm:Shewmr7_0325 Na+/Ca+ antiporter, CaCA family; CaCA family Na(+)/Ca(+) antiporter 4323786 4660845 Sputw3181_3775 Shewanella sp. W3-18-1 CaCA family Na(+)/Ca(+) antiporter YP_965134.1 4322836 D 351745 CDS YP_965135.1 120600561 4660855 4324128..4326542 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: hne:HNE_1653 TonB-dependent receptor; TonB-dependent receptor 4326542 4660855 Sputw3181_3776 Shewanella sp. W3-18-1 TonB-dependent receptor YP_965135.1 4324128 D 351745 CDS YP_965136.1 120600562 4660975 complement(4326904..4328025) 1 NC_008750.1 KEGG: shm:Shewmr7_0321 hypothetical protein; hypothetical protein 4328025 4660975 Sputw3181_3777 Shewanella sp. W3-18-1 hypothetical protein YP_965136.1 4326904 R 351745 CDS YP_965137.1 120600563 4661546 4328289..4328810 1 NC_008750.1 PFAM: superoxide dismutase, copper/zinc binding; KEGG: vch:VC1583 superoxide dismutase, Cu-Zn; superoxide dismutase, copper/zinc binding 4328810 4661546 Sputw3181_3778 Shewanella sp. W3-18-1 superoxide dismutase, copper/zinc binding YP_965137.1 4328289 D 351745 CDS YP_965138.1 120600564 4661028 4328970..4330499 1 NC_008750.1 KEGG: son:SO0349 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 4330499 4661028 Sputw3181_3779 Shewanella sp. W3-18-1 Mg chelatase subunit ChlI YP_965138.1 4328970 D 351745 CDS YP_965139.1 120600565 4661513 4330601..4331497 1 NC_008750.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0348 acyltransferase family protein; putative acyltransferase 4331497 4661513 Sputw3181_3780 Shewanella sp. W3-18-1 putative acyltransferase YP_965139.1 4330601 D 351745 CDS YP_965140.1 120600566 4661402 4331511..4332455 1 NC_008750.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: she:Shewmr4_3626 phospholipid/glycerol acyltransferase; putative acyltransferase 4332455 4661402 Sputw3181_3781 Shewanella sp. W3-18-1 putative acyltransferase YP_965140.1 4331511 D 351745 CDS YP_965141.1 120600567 4661628 complement(4332452..4332958) 1 NC_008750.1 PFAM: protein of unknown function DUF523; KEGG: she:Shewmr4_3627 protein of unknown function DUF523; hypothetical protein 4332958 4661628 Sputw3181_3782 Shewanella sp. W3-18-1 hypothetical protein YP_965141.1 4332452 R 351745 CDS YP_965142.1 120600568 4661156 4333259..4334026 1 NC_008750.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: shm:Shewmr7_0316 transcriptional regulator, GntR family; GntR family transcriptional regulator 4334026 4661156 Sputw3181_3783 Shewanella sp. W3-18-1 GntR family transcriptional regulator YP_965142.1 4333259 D 351745 CDS YP_965143.1 120600569 4661149 4334079..4334957 1 NC_008750.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 4334957 prpB 4661149 prpB Shewanella sp. W3-18-1 2-methylisocitrate lyase YP_965143.1 4334079 D 351745 CDS YP_965144.1 120600570 4661154 4335122..4336249 1 NC_008750.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 4336249 4661154 Sputw3181_3785 Shewanella sp. W3-18-1 methylcitrate synthase YP_965144.1 4335122 D 351745 CDS YP_965145.2 161936273 4661152 4336342..4338933 1 NC_008750.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 4338933 4661152 Sputw3181_3786 Shewanella sp. W3-18-1 aconitate hydratase YP_965145.2 4336342 D 351745 CDS YP_965146.1 120600572 4661140 4339027..4340226 1 NC_008750.1 TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: shm:Shewmr7_0312 putative AcnD-accessory protein PrpF; putative AcnD-accessory protein PrpF 4340226 4661140 Sputw3181_3787 Shewanella sp. W3-18-1 putative AcnD-accessory protein PrpF YP_965146.1 4339027 D 351745 CDS YP_965147.1 120600573 4661121 4340281..4341144 1 NC_008750.1 KEGG: sil:SPO1470 isocitrate lyase family protein; isocitrate lyase family protein 4341144 4661121 Sputw3181_3788 Shewanella sp. W3-18-1 isocitrate lyase family protein YP_965147.1 4340281 D 351745 CDS YP_965148.1 120600574 4661085 4341417..4345952 1 NC_008750.1 KEGG: shm:Shewmr7_0311 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4345952 4661085 Sputw3181_3789 Shewanella sp. W3-18-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_965148.1 4341417 D 351745 CDS YP_965149.1 120600575 4661019 complement(4346011..4347102) 1 NC_008750.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4347102 4661019 Sputw3181_3790 Shewanella sp. W3-18-1 branched-chain amino acid aminotransferase YP_965149.1 4346011 R 351745 CDS YP_965150.1 120600576 4661040 4347229..4347501 1 NC_008750.1 PFAM: Modulator of Rho-dependent transcription termination; KEGG: shm:Shewmr7_0308 transcriptional antiterminator, Rof; transcriptional antiterminator Rof 4347501 4661040 Sputw3181_3791 Shewanella sp. W3-18-1 transcriptional antiterminator Rof YP_965150.1 4347229 D 351745 CDS YP_965151.1 120600577 4661871 4347515..4347856 1 NC_008750.1 KEGG: son:SO0338 hypothetical protein; hypothetical protein 4347856 4661871 Sputw3181_3792 Shewanella sp. W3-18-1 hypothetical protein YP_965151.1 4347515 D 351745 CDS YP_965152.1 120600578 4661870 complement(4347982..4348335) 1 NC_008750.1 PFAM: Endoribonuclease L-PSP; KEGG: son:SO0337 hypothetical translation initiation inhibitor, YjgF family; endoribonuclease L-PSP 4348335 4661870 Sputw3181_3793 Shewanella sp. W3-18-1 endoribonuclease L-PSP YP_965152.1 4347982 R 351745 CDS YP_965153.1 120600579 4661863 complement(4348400..4349929) 1 NC_008750.1 PFAM: Na+/H+ antiporter NhaC; KEGG: she:Shewmr4_3639 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 4349929 4661863 Sputw3181_3794 Shewanella sp. W3-18-1 Na+/H+ antiporter NhaC YP_965153.1 4348400 R 351745 CDS YP_965154.1 120600580 4661852 4350109..4350330 1 NC_008750.1 PFAM: protein of unknown function DUF904; KEGG: shm:Shewmr7_0304 protein of unknown function DUF904; hypothetical protein 4350330 4661852 Sputw3181_3795 Shewanella sp. W3-18-1 hypothetical protein YP_965154.1 4350109 D 351745 CDS YP_965155.1 120600581 4661840 complement(4350327..4350539) 1 NC_008750.1 PFAM: protein of unknown function DUF1107; KEGG: son:SO0334 hypothetical protein; hypothetical protein 4350539 4661840 Sputw3181_3796 Shewanella sp. W3-18-1 hypothetical protein YP_965155.1 4350327 R 351745 CDS YP_965156.1 120600582 4661839 complement(4351009..4351617) 1 NC_008750.1 PFAM: DSBA oxidoreductase; KEGG: son:SO0333 thiol:disulfide interchange protein DsbA; DSBA oxidoreductase 4351617 4661839 Sputw3181_3797 Shewanella sp. W3-18-1 DSBA oxidoreductase YP_965156.1 4351009 R 351745 CDS YP_965157.1 120600583 4661794 complement(4351742..4352779) 1 NC_008750.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4352779 4661794 Sputw3181_3798 Shewanella sp. W3-18-1 serine/threonine protein kinase YP_965157.1 4351742 R 351745 CDS YP_965158.1 120600584 4661824 complement(4352790..4353113) 1 NC_008750.1 KEGG: she:Shewmr4_3644 hypothetical protein; hypothetical protein 4353113 4661824 Sputw3181_3799 Shewanella sp. W3-18-1 hypothetical protein YP_965158.1 4352790 R 351745 CDS YP_965159.1 120600585 4661829 complement(4353127..4354581) 1 NC_008750.1 PFAM: protein of unknown function UPF0061; KEGG: she:Shewmr4_3645 protein of unknown function UPF0061; hypothetical protein 4354581 4661829 Sputw3181_3800 Shewanella sp. W3-18-1 hypothetical protein YP_965159.1 4353127 R 351745 CDS YP_965160.1 120600586 4661780 complement(4354592..4354885) 1 NC_008750.1 KEGG: shm:Shewmr7_0298 hypothetical protein; hypothetical protein 4354885 4661780 Sputw3181_3801 Shewanella sp. W3-18-1 hypothetical protein YP_965160.1 4354592 R 351745 CDS YP_965161.1 120600587 4661799 complement(4355012..4355893) 1 NC_008750.1 KEGG: shm:Shewmr7_0297 hypothetical protein; hypothetical protein 4355893 4661799 Sputw3181_3802 Shewanella sp. W3-18-1 hypothetical protein YP_965161.1 4355012 R 351745 CDS YP_965162.1 120600588 4661800 4356165..4356524 1 NC_008750.1 PFAM: DsrE family protein; KEGG: shm:Shewmr7_0296 DsrE family protein; DsrE family protein 4356524 4661800 Sputw3181_3803 Shewanella sp. W3-18-1 DsrE family protein YP_965162.1 4356165 D 351745 CDS YP_965163.1 120600589 4661788 4356663..4357064 1 NC_008750.1 KEGG: shm:Shewmr7_0295 hypothetical protein; hypothetical protein 4357064 4661788 Sputw3181_3804 Shewanella sp. W3-18-1 hypothetical protein YP_965163.1 4356663 D 351745 CDS YP_965164.1 120600590 4661732 4357119..4358054 1 NC_008750.1 KEGG: she:Shewmr4_3650 hypothetical protein; hypothetical protein 4358054 4661732 Sputw3181_3805 Shewanella sp. W3-18-1 hypothetical protein YP_965164.1 4357119 D 351745 CDS YP_965165.1 120600591 4661776 4358199..4358783 1 NC_008750.1 KEGG: shm:Shewmr7_0293 hypothetical protein; hypothetical protein 4358783 4661776 Sputw3181_3806 Shewanella sp. W3-18-1 hypothetical protein YP_965165.1 4358199 D 351745 CDS YP_965166.1 120600592 4661774 complement(4358890..4359891) 1 NC_008750.1 PFAM: periplasmic binding protein; KEGG: ppu:PP_2591 ferric siderophore ABC transporter, periplasmic siderophore-binding protein; periplasmic binding protein 4359891 4661774 Sputw3181_3807 Shewanella sp. W3-18-1 periplasmic binding protein YP_965166.1 4358890 R 351745 CDS YP_965167.1 120600593 4661772 complement(4359888..4360670) 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN2494 ferric siderophore ABC transporter, ATP-binding protein BauE; ABC transporter-like protein 4360670 4661772 Sputw3181_3808 Shewanella sp. W3-18-1 ABC transporter-like protein YP_965167.1 4359888 R 351745 CDS YP_965168.1 120600594 4661764 complement(4360667..4361572) 1 NC_008750.1 PFAM: transport system permease protein; KEGG: pen:PSEEN2495 ferric siderophore ABC transporter, permease protein BauC; transport system permease 4361572 4661764 Sputw3181_3809 Shewanella sp. W3-18-1 transport system permease YP_965168.1 4360667 R 351745 CDS YP_965169.1 120600595 4661130 complement(4361614..4362555) 1 NC_008750.1 PFAM: transport system permease protein; ABC-3 protein; KEGG: ppu:PP_2594 ferric siderophore ABC transporter, permease protein; transport system permease 4362555 4661130 Sputw3181_3810 Shewanella sp. W3-18-1 transport system permease YP_965169.1 4361614 R 351745 CDS YP_965170.1 120600596 4661751 complement(4362628..4363338) 1 NC_008750.1 KEGG: rha:RHA1_ro03859 probable tetracycline repressor; hypothetical protein 4363338 4661751 Sputw3181_3811 Shewanella sp. W3-18-1 hypothetical protein YP_965170.1 4362628 R 351745 CDS YP_965171.1 120600597 4661737 complement(4363431..4365548) 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rru:Rru_A2312 TonB-dependent receptor; TonB-dependent receptor 4365548 4661737 Sputw3181_3812 Shewanella sp. W3-18-1 TonB-dependent receptor YP_965171.1 4363431 R 351745 CDS YP_965172.1 120600598 4661730 4365867..4367468 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bur:Bcep18194_B0675 ABC efflux pump, fused inner membrane and ATPase subunits; ABC transporter-like protein 4367468 4661730 Sputw3181_3813 Shewanella sp. W3-18-1 ABC transporter-like protein YP_965172.1 4365867 D 351745 CDS YP_965173.1 120600599 4661738 4367465..4369024 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa28020 putative ABC transporter; ABC transporter-like protein 4369024 4661738 Sputw3181_3814 Shewanella sp. W3-18-1 ABC transporter-like protein YP_965173.1 4367465 D 351745 CDS YP_965174.1 120600600 4661724 complement(4369202..4369792) 1 NC_008750.1 KEGG: son:SO0321 hypothetical protein; hypothetical protein 4369792 4661724 Sputw3181_3815 Shewanella sp. W3-18-1 hypothetical protein YP_965174.1 4369202 R 351745 CDS YP_965175.1 120600601 4661725 complement(4369875..4370912) 1 NC_008750.1 PFAM: acyltransferase 3; KEGG: she:Shewmr4_3653 acyltransferase 3; acyltransferase 3 4370912 4661725 Sputw3181_3816 Shewanella sp. W3-18-1 acyltransferase 3 YP_965175.1 4369875 R 351745 CDS YP_965176.1 120600602 4661695 complement(4370915..4372330) 1 NC_008750.1 KEGG: she:Shewmr4_3654 hypothetical protein; hypothetical protein 4372330 4661695 Sputw3181_3817 Shewanella sp. W3-18-1 hypothetical protein YP_965176.1 4370915 R 351745 CDS YP_965177.1 120600603 4661711 complement(4372501..4372851) 1 NC_008750.1 PFAM: protein of unknown function DUF1232; KEGG: she:Shewmr4_3655 protein of unknown function DUF1232; hypothetical protein 4372851 4661711 Sputw3181_3818 Shewanella sp. W3-18-1 hypothetical protein YP_965177.1 4372501 R 351745 CDS YP_965178.1 120600604 4661709 4373453..4373557 1 NC_008750.1 KEGG: shm:Shewmr7_0279 hypothetical protein; hypothetical protein 4373557 4661709 Sputw3181_3819 Shewanella sp. W3-18-1 hypothetical protein YP_965178.1 4373453 D 351745 CDS YP_965179.1 120600605 4661703 4373980..4375590 1 NC_008750.1 KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 4375590 4661703 Sputw3181_3820 Shewanella sp. W3-18-1 IS4 family transposase YP_965179.1 4373980 D 351745 CDS YP_965180.1 120600606 4661052 4375649..4377811 1 NC_008750.1 PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: she:Shewmr4_3667 ornithine decarboxylase; ornithine decarboxylase 4377811 4661052 Sputw3181_3821 Shewanella sp. W3-18-1 ornithine decarboxylase YP_965180.1 4375649 D 351745 CDS YP_965181.1 120600607 4661537 4377896..4379215 1 NC_008750.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 4379215 potE 4661537 potE Shewanella sp. W3-18-1 putrescine transporter YP_965181.1 4377896 D 351745 CDS YP_965182.1 120600608 4661683 4379340..4380494 1 NC_008750.1 PFAM: porin, Gram-negative type; KEGG: she:Shewmr4_3669 porin, gram-negative type; porin 4380494 4661683 Sputw3181_3823 Shewanella sp. W3-18-1 porin YP_965182.1 4379340 D 351745 CDS YP_965183.1 120600609 4661674 complement(4380739..4383111) 1 NC_008750.1 PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: son:SO0311 hypothetical Fe-S oxidoreductase; hypothetical protein 4383111 4661674 Sputw3181_3824 Shewanella sp. W3-18-1 hypothetical protein YP_965183.1 4380739 R 351745 CDS YP_965184.1 120600610 4661677 complement(4383313..4383723) 1 NC_008750.1 KEGG: shm:Shewmr7_0274 hypothetical protein; hypothetical protein 4383723 4661677 Sputw3181_3825 Shewanella sp. W3-18-1 hypothetical protein YP_965184.1 4383313 R 351745 CDS YP_965185.1 120600611 4661617 4383882..4385102 1 NC_008750.1 PFAM: protein of unknown function DUF1212; KEGG: son:SO0308 hypothetical protein; hypothetical protein 4385102 4661617 Sputw3181_3826 Shewanella sp. W3-18-1 hypothetical protein YP_965185.1 4383882 D 351745 CDS YP_965186.1 120600612 4661647 4385306..4386955 1 NC_008750.1 KEGG: she:Shewmr4_3673 hypothetical protein; hypothetical protein 4386955 4661647 Sputw3181_3827 Shewanella sp. W3-18-1 hypothetical protein YP_965186.1 4385306 D 351745 CDS YP_965187.1 120600613 4661650 complement(4386987..4387706) 1 NC_008750.1 PFAM: ThiJ/PfpI domain protein; KEGG: lbl:LBL_2610 transcriptional regulator, ThiJ/PfpI family protein; ThiJ/PfpI domain-containing protein 4387706 4661650 Sputw3181_3828 Shewanella sp. W3-18-1 ThiJ/PfpI domain-containing protein YP_965187.1 4386987 R 351745 CDS YP_965188.1 120600614 4661610 4387950..4388561 1 NC_008750.1 PFAM: regulatory protein, TetR; KEGG: btk:BT9727_2867 transcriptional regulator, TetR family; TetR family transcriptional regulator 4388561 4661610 Sputw3181_3829 Shewanella sp. W3-18-1 TetR family transcriptional regulator YP_965188.1 4387950 D 351745 CDS YP_965189.1 120600615 4661613 complement(4388600..4388854) 1 NC_008750.1 KEGG: sdn:Sden_0547 hypothetical protein; hypothetical protein 4388854 4661613 Sputw3181_3830 Shewanella sp. W3-18-1 hypothetical protein YP_965189.1 4388600 R 351745 CDS YP_965190.1 120600616 4661616 complement(4388866..4389369) 1 NC_008750.1 KEGG: sdn:Sden_0546 putative orphan protein; hypothetical protein 4389369 4661616 Sputw3181_3831 Shewanella sp. W3-18-1 hypothetical protein YP_965190.1 4388866 R 351745 CDS YP_965191.1 120600617 4661550 complement(4389379..4389702) 1 NC_008750.1 KEGG: sdn:Sden_0545 hypothetical protein; hypothetical protein 4389702 4661550 Sputw3181_3832 Shewanella sp. W3-18-1 hypothetical protein YP_965191.1 4389379 R 351745 CDS YP_965192.1 120600618 4658197 complement(4390492..4391334) 1 NC_008750.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: shm:Shewmr7_0262 protein of unknown function UPF0011; uroporphyrin-III C/tetrapyrrole methyltransferase 4391334 4658197 Sputw3181_3833 Shewanella sp. W3-18-1 uroporphyrin-III C/tetrapyrrole methyltransferase YP_965192.1 4390492 R 351745 CDS YP_965193.1 120600619 4661539 4391423..4393273 1 NC_008750.1 PFAM: LppC family lipoprotein; KEGG: she:Shewmr4_3684 LppC family lipoprotein; LppC family lipoprotein 4393273 4661539 Sputw3181_3834 Shewanella sp. W3-18-1 LppC family lipoprotein YP_965193.1 4391423 D 351745 CDS YP_965194.1 120600620 4661598 4393270..4393596 1 NC_008750.1 PFAM: protein of unknown function UPF0102; KEGG: shm:Shewmr7_0260 protein of unknown function UPF0102; hypothetical protein 4393596 4661598 Sputw3181_3835 Shewanella sp. W3-18-1 hypothetical protein YP_965194.1 4393270 D 351745 CDS YP_965195.1 120600621 4661576 4393689..4394282 1 NC_008750.1 TIGRFAM: phosphoheptose isomerase; KEGG: shm:Shewmr7_0259 phosphoheptose isomerase; phosphoheptose isomerase 4394282 4661576 Sputw3181_3836 Shewanella sp. W3-18-1 phosphoheptose isomerase YP_965195.1 4393689 D 351745 CDS YP_965196.1 120600622 4661605 4394279..4394845 1 NC_008750.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: shm:Shewmr7_0258 transport-associated; transport-associated 4394845 4661605 Sputw3181_3837 Shewanella sp. W3-18-1 transport-associated YP_965196.1 4394279 D 351745 CDS YP_965197.1 120600623 4661601 complement(4394866..4395789) 1 NC_008750.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: shm:Shewmr7_0257 protein of unknown function DUF6, transmembrane; hypothetical protein 4395789 4661601 Sputw3181_3838 Shewanella sp. W3-18-1 hypothetical protein YP_965197.1 4394866 R 351745 CDS YP_965198.1 120600624 4661578 4395909..4396781 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0256 transcriptional regulator, LysR family; LysR family transcriptional regulator 4396781 4661578 Sputw3181_3839 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_965198.1 4395909 D 351745 CDS YP_965199.1 120600625 4661581 complement(4396851..4397849) 1 NC_008750.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 4397849 4661581 Sputw3181_3840 Shewanella sp. W3-18-1 tryptophanyl-tRNA synthetase YP_965199.1 4396851 R 351745 CDS YP_965200.1 120600626 4661561 complement(4397894..4398574) 1 NC_008750.1 TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shm:Shewmr7_0254 phosphoglycolate phosphatase; phosphoglycolate phosphatase 4398574 4661561 Sputw3181_3841 Shewanella sp. W3-18-1 phosphoglycolate phosphatase YP_965200.1 4397894 R 351745 CDS YP_965201.1 120600627 4661569 complement(4398579..4399289) 1 NC_008750.1 PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; KEGG: shm:Shewmr7_0253 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 4399289 4661569 Sputw3181_3842 Shewanella sp. W3-18-1 ribulose-phosphate 3-epimerase YP_965201.1 4398579 R 351745 CDS YP_965202.1 120600628 4661556 4399519..4399884 1 NC_008750.1 KEGG: shm:Shewmr7_0252 hypothetical protein; hypothetical protein 4399884 4661556 Sputw3181_3843 Shewanella sp. W3-18-1 hypothetical protein YP_965202.1 4399519 D 351745 CDS YP_965203.1 120600629 4661540 complement(4400087..4400926) 1 NC_008750.1 KEGG: she:Shewmr4_3695 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 4400926 4661540 Sputw3181_3844 Shewanella sp. W3-18-1 DNA adenine methylase YP_965203.1 4400087 R 351745 CDS YP_965204.1 120600630 4660345 complement(4400975..4402366) 1 NC_008750.1 PFAM: Sporulation domain protein; KEGG: son:SO0288 DamX domain protein; sporulation domain-containing protein 4402366 4660345 Sputw3181_3845 Shewanella sp. W3-18-1 sporulation domain-containing protein YP_965204.1 4400975 R 351745 CDS YP_965205.1 120600631 4661533 complement(4402385..4403464) 1 NC_008750.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 4403464 aroB 4661533 aroB Shewanella sp. W3-18-1 3-dehydroquinate synthase YP_965205.1 4402385 R 351745 CDS YP_965206.1 120600632 4661506 complement(4403470..4403985) 1 NC_008750.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 4403985 aroK 4661506 aroK Shewanella sp. W3-18-1 shikimate kinase I YP_965206.1 4403470 R 351745 CDS YP_965207.1 120600633 4661511 complement(4404202..4406253) 1 NC_008750.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: she:Shewmr4_3699 type IV pilus secretin PilQ; type IV pilus secretin PilQ 4406253 4661511 Sputw3181_3848 Shewanella sp. W3-18-1 type IV pilus secretin PilQ YP_965207.1 4404202 R 351745 CDS YP_965208.1 120600634 4661503 complement(4406275..4406793) 1 NC_008750.1 PFAM: Pilus assembly protein, PilQ; KEGG: shm:Shewmr7_0245 pilus assembly protein, PilQ; pilus assembly protein, PilQ 4406793 4661503 Sputw3181_3849 Shewanella sp. W3-18-1 pilus assembly protein, PilQ YP_965208.1 4406275 R 351745 CDS YP_965209.1 120600635 4661490 complement(4406790..4407416) 1 NC_008750.1 PFAM: Pilus assembly protein, PilO; KEGG: shm:Shewmr7_0244 pilus assembly protein, PilO; pilus assembly protein, PilO 4407416 4661490 Sputw3181_3850 Shewanella sp. W3-18-1 pilus assembly protein, PilO YP_965209.1 4406790 R 351745 CDS YP_965210.1 120600636 4658156 4407657..4408907 1 NC_008750.1 PFAM: transposase, IS4 family protein; KEGG: sak:SAK_2050 IS10R, transposase; transposase, IS4 family protein 4408907 4658156 Sputw3181_3852 Shewanella sp. W3-18-1 transposase, IS4 family protein YP_965210.1 4407657 D 351745 CDS YP_965211.1 120600637 4661499 complement(4408891..4409334) 1 NC_008750.1 PFAM: Fimbrial assembly family protein; KEGG: shm:Shewmr7_0243 fimbrial assembly family protein; fimbrial assembly family protein 4409334 4661499 Sputw3181_3853 Shewanella sp. W3-18-1 fimbrial assembly family protein YP_965211.1 4408891 R 351745 CDS YP_965212.1 120600638 4661491 complement(4409322..4410401) 1 NC_008750.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: son:SO0281 type IV pilus biogenesis protein PilM; type IV pilus assembly protein PilM 4410401 4661491 Sputw3181_3854 Shewanella sp. W3-18-1 type IV pilus assembly protein PilM YP_965212.1 4409322 R 351745 CDS YP_965213.1 120600639 4661479 4410590..4413109 1 NC_008750.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: shm:Shewmr7_0241 penicillin-binding protein, 1A family; 1A family penicillin-binding protein 4413109 4661479 Sputw3181_3855 Shewanella sp. W3-18-1 1A family penicillin-binding protein YP_965213.1 4410590 D 351745 CDS YP_965214.1 120600640 4661476 complement(4413192..4414559) 1 NC_008750.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4414559 4661476 Sputw3181_3856 Shewanella sp. W3-18-1 argininosuccinate lyase YP_965214.1 4413192 R 351745 CDS YP_965215.1 120600641 4661468 complement(4414652..4415875) 1 NC_008750.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 4415875 4661468 Sputw3181_3857 Shewanella sp. W3-18-1 argininosuccinate synthase YP_965215.1 4414652 R 351745 CDS YP_965216.1 120600642 4661453 complement(4415935..4416840) 1 NC_008750.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 4416840 4661453 Sputw3181_3858 Shewanella sp. W3-18-1 ornithine carbamoyltransferase YP_965216.1 4415935 R 351745 CDS YP_965217.1 120600643 4661438 complement(4416853..4417635) 1 NC_008750.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4417635 4661438 Sputw3181_3859 Shewanella sp. W3-18-1 acetylglutamate kinase YP_965217.1 4416853 R 351745 CDS YP_965218.1 120600644 4661436 complement(4417667..4418719) 1 NC_008750.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 4418719 argC 4661436 argC Shewanella sp. W3-18-1 N-acetyl-gamma-glutamyl-phosphate reductase YP_965218.1 4417667 R 351745 CDS YP_965219.1 120600645 4661430 4419271..4421940 1 NC_008750.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4421940 4661430 Sputw3181_3861 Shewanella sp. W3-18-1 phosphoenolpyruvate carboxylase YP_965219.1 4419271 D 351745 CDS YP_965220.1 120600646 4661429 4421940..4422485 1 NC_008750.1 PFAM: protein of unknown function DUF1439; KEGG: shm:Shewmr7_0234 protein of unknown function DUF1439; hypothetical protein 4422485 4661429 Sputw3181_3862 Shewanella sp. W3-18-1 hypothetical protein YP_965220.1 4421940 D 351745 CDS YP_965221.1 120600647 4661415 complement(4422576..4423850) 1 NC_008750.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: son:SO0272 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA 4423850 4661415 Sputw3181_3863 Shewanella sp. W3-18-1 competence/damage-inducible protein CinA YP_965221.1 4422576 R 351745 CDS YP_965222.1 120600648 4658118 complement(4429905..4430810) 1 NC_008750.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: she:Shewmr4_3713 DNA binding domain, excisionase family; DNA binding domain-containing protein 4430810 4658118 Sputw3181_3864 Shewanella sp. W3-18-1 DNA binding domain-containing protein YP_965222.1 4429905 R 351745 CDS YP_965223.1 120600649 4661419 complement(4430873..4431826) 1 NC_008750.1 PFAM: formate dehydrogenase, subunit FdhD; KEGG: she:Shewmr4_3714 formate dehydrogenase, subunit FdhD; formate dehydrogenase subunit FdhD 4431826 4661419 Sputw3181_3865 Shewanella sp. W3-18-1 formate dehydrogenase subunit FdhD YP_965223.1 4430873 R 351745 CDS YP_965224.1 120600650 4661410 4432076..4432540 1 NC_008750.1 KEGG: son:SO4504 hypothetical protein; hypothetical protein 4432540 4661410 Sputw3181_3866 Shewanella sp. W3-18-1 hypothetical protein YP_965224.1 4432076 D 351745 CDS YP_965225.1 120600651 4661412 4432540..4433196 1 NC_008750.1 KEGG: shm:Shewmr7_3787 hypothetical protein; hypothetical protein 4433196 4661412 Sputw3181_3867 Shewanella sp. W3-18-1 hypothetical protein YP_965225.1 4432540 D 351745 CDS YP_965226.1 120600652 4661409 4433384..4435045 1 NC_008750.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4506 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 4435045 4661409 Sputw3181_3868 Shewanella sp. W3-18-1 4Fe-4S ferredoxin YP_965226.1 4433384 D 351745 CDS YP_965227.1 120600653 4661401 4435056..4435733 1 NC_008750.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: shm:Shewmr7_3789 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 4435733 4661401 Sputw3181_3869 Shewanella sp. W3-18-1 cytoplasmic chaperone TorD family protein YP_965227.1 4435056 D 351745 CDS YP_965228.1 120600654 4661416 4435860..4436090 1 NC_008750.1 KEGG: son:SO4508 hypothetical protein; hypothetical protein 4436090 4661416 Sputw3181_3870 Shewanella sp. W3-18-1 hypothetical protein YP_965228.1 4435860 D 351745 CDS YP_965229.1 120600655 4661381 4436109..4438958 1 NC_008750.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4509 formate dehydrogenase, alpha subunit; molybdopterin oxidoreductase 4438958 4661381 Sputw3181_3871 Shewanella sp. W3-18-1 molybdopterin oxidoreductase YP_965229.1 4436109 D 351745 CDS YP_965230.1 120600656 4661087 4438985..4439581 1 NC_008750.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4510 formate dehydrogenase, iron-sulfur subunit; 4Fe-4S ferredoxin 4439581 4661087 Sputw3181_3872 Shewanella sp. W3-18-1 4Fe-4S ferredoxin YP_965230.1 4438985 D 351745 CDS YP_965231.1 120600657 4661394 4439631..4440659 1 NC_008750.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: shm:Shewmr7_3793 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 4440659 4661394 Sputw3181_3873 Shewanella sp. W3-18-1 formate dehydrogenase subunit gamma YP_965231.1 4439631 D 351745 CDS YP_965232.1 120600658 4661046 4441047..4441247 1 NC_008750.1 KEGG: son:SO4512 hypothetical protein; hypothetical protein 4441247 4661046 Sputw3181_3874 Shewanella sp. W3-18-1 hypothetical protein YP_965232.1 4441047 D 351745 CDS YP_965233.1 120600659 4661134 4441265..4444117 1 NC_008750.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: shm:Shewmr7_3795 twin-arginine translocation pathway signal; molybdopterin oxidoreductase 4444117 4661134 Sputw3181_3875 Shewanella sp. W3-18-1 molybdopterin oxidoreductase YP_965233.1 4441265 D 351745 CDS YP_965234.1 120600660 4661393 4444147..4444716 1 NC_008750.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_3796 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4444716 4661393 Sputw3181_3876 Shewanella sp. W3-18-1 4Fe-4S ferredoxin YP_965234.1 4444147 D 351745 CDS YP_965235.1 120600661 4661106 4444796..4445779 1 NC_008750.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: she:Shewmr4_3726 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 4445779 4661106 Sputw3181_3877 Shewanella sp. W3-18-1 formate dehydrogenase subunit gamma YP_965235.1 4444796 D 351745 CDS YP_965236.1 120600662 4661026 complement(4445873..4447930) 1 NC_008750.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_3798 TonB-dependent receptor; TonB-dependent receptor 4447930 4661026 Sputw3181_3878 Shewanella sp. W3-18-1 TonB-dependent receptor YP_965236.1 4445873 R 351745 CDS YP_965237.1 120600663 4661356 complement(4448261..4448899) 1 NC_008750.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_3819 methyltransferase type 11; type 11 methyltransferase 4448899 4661356 Sputw3181_3879 Shewanella sp. W3-18-1 type 11 methyltransferase YP_965237.1 4448261 R 351745 CDS YP_965238.1 120600664 4660426 complement(4448970..4449323) 1 NC_008750.1 KEGG: she:Shewmr4_3747 hypothetical protein; hypothetical protein 4449323 4660426 Sputw3181_3880 Shewanella sp. W3-18-1 hypothetical protein YP_965238.1 4448970 R 351745 CDS YP_965239.1 120600665 4661058 4449630..4451750 1 NC_008750.1 KEGG: son:SO4552 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 4451750 4661058 Sputw3181_3881 Shewanella sp. W3-18-1 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_965239.1 4449630 D 351745 CDS YP_965240.1 120600666 4661051 complement(4452111..4452824) 1 NC_008750.1 PFAM: DTW domain containing protein; KEGG: son:SO4554 hypothetical protein; DTW domain-containing protein 4452824 4661051 Sputw3181_3882 Shewanella sp. W3-18-1 DTW domain-containing protein YP_965240.1 4452111 R 351745 CDS YP_965241.1 120600667 4661345 complement(4452840..4454048) 1 NC_008750.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4555 drug resistance transporter, Bcr/CflA family protein; Bcr/CflA subfamily drug resistance transporter 4454048 4661345 Sputw3181_3883 Shewanella sp. W3-18-1 Bcr/CflA subfamily drug resistance transporter YP_965241.1 4452840 R 351745 CDS YP_965242.1 120600668 4661367 4454162..4455133 1 NC_008750.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4556 transcriptional regulator, LysR family; LysR family transcriptional regulator 4455133 4661367 Sputw3181_3884 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_965242.1 4454162 D 351745 CDS YP_965243.1 120600669 4661091 complement(4455236..4457107) 1 NC_008750.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: son:SO4557 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4457107 4661091 Sputw3181_3885 Shewanella sp. W3-18-1 methyl-accepting chemotaxis sensory transducer YP_965243.1 4455236 R 351745 CDS YP_965244.1 120600670 4661376 4457470..4457799 1 NC_008750.1 KEGG: shm:Shewmr7_3826 hypothetical protein; hypothetical protein 4457799 4661376 Sputw3181_3886 Shewanella sp. W3-18-1 hypothetical protein YP_965244.1 4457470 D 351745 CDS YP_965245.1 120600671 4661192 complement(4457809..4459263) 1 NC_008750.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: she:Shewmr4_3754 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 4459263 4661192 Sputw3181_3887 Shewanella sp. W3-18-1 Sel1 domain-containing protein YP_965245.1 4457809 R 351745 CDS YP_965246.1 120600672 4661109 complement(4459298..4460005) 1 NC_008750.1 KEGG: shm:Shewmr7_3828 hypothetical protein; hypothetical protein 4460005 4661109 Sputw3181_3888 Shewanella sp. W3-18-1 hypothetical protein YP_965246.1 4459298 R 351745 CDS YP_965247.1 120600673 4661366 4460195..4460725 1 NC_008750.1 KEGG: she:Shewmr4_3756 hypothetical protein; hypothetical protein 4460725 4661366 Sputw3181_3889 Shewanella sp. W3-18-1 hypothetical protein YP_965247.1 4460195 D 351745 CDS YP_965248.1 120600674 4661276 4460823..4461281 1 NC_008750.1 PFAM: protein of unknown function DUF1332; KEGG: shm:Shewmr7_3830 protein of unknown function DUF1332; hypothetical protein 4461281 4661276 Sputw3181_3890 Shewanella sp. W3-18-1 hypothetical protein YP_965248.1 4460823 D 351745 CDS YP_965249.1 120600675 4661336 complement(4461264..4462526) 1 NC_008750.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH 4462526 4661336 Sputw3181_3891 Shewanella sp. W3-18-1 inner membrane protein YjeH YP_965249.1 4461264 R 351745 CDS YP_965250.1 120600676 4661207 4462776..4463207 1 NC_008750.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: son:SO4567 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4463207 4661207 Sputw3181_3892 Shewanella sp. W3-18-1 AsnC family transcriptional regulator YP_965250.1 4462776 D 351745 CDS YP_965251.1 120600677 4661208 complement(4463485..4464426) 1 NC_008750.1 PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4568 formate-dependent nitrite reductase, nrfD protein; polysulfide reductase, NrfD 4464426 4661208 Sputw3181_3893 Shewanella sp. W3-18-1 polysulfide reductase, NrfD YP_965251.1 4463485 R 351745 CDS YP_965252.1 120600678 4661219 complement(4464423..4465109) 1 NC_008750.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: she:Shewmr4_3763 twin-arginine translocation pathway signal; 4Fe-4S ferredoxin 4465109 4661219 Sputw3181_3894 Shewanella sp. W3-18-1 4Fe-4S ferredoxin YP_965252.1 4464423 R 351745 CDS YP_965253.1 120600679 4661312 complement(4465114..4465578) 1 NC_008750.1 KEGG: she:Shewmr4_3764 formate-dependent nitrite reductase; formate-dependent nitrite reductase 4465578 4661312 Sputw3181_3895 Shewanella sp. W3-18-1 formate-dependent nitrite reductase YP_965253.1 4465114 R 351745 CDS YP_965254.1 120600680 4661333 complement(4465656..4466132) 1 NC_008750.1 KEGG: she:Shewmr4_3765 hypothetical protein; hypothetical protein 4466132 4661333 Sputw3181_3896 Shewanella sp. W3-18-1 hypothetical protein YP_965254.1 4465656 R 351745 CDS YP_965255.1 120600681 4661320 4466544..4467512 1 NC_008750.1 PFAM: regulatory protein, LysR; KEGG: shm:Shewmr7_3839 transcriptional regulator, LysR family; LysR family transcriptional regulator 4467512 4661320 Sputw3181_3897 Shewanella sp. W3-18-1 LysR family transcriptional regulator YP_965255.1 4466544 D 351745 CDS YP_965256.1 120600682 4661329 4467695..4469416 1 NC_008750.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 4469416 4661329 Sputw3181_3898 Shewanella sp. W3-18-1 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_965256.1 4467695 D 351745 CDS YP_965257.1 120600683 4661266 4469416..4470204 1 NC_008750.1 PFAM: alpha/beta hydrolase fold; KEGG: shm:Shewmr7_3841 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 4470204 4661266 Sputw3181_3899 Shewanella sp. W3-18-1 alpha/beta hydrolase fold domain-containing protein YP_965257.1 4469416 D 351745 CDS YP_965258.1 120600684 4661314 4470232..4471326 1 NC_008750.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 4471326 4661314 Sputw3181_3900 Shewanella sp. W3-18-1 O-succinylbenzoate synthase YP_965258.1 4470232 D 351745 CDS YP_965259.1 120600685 4661303 4471328..4472740 1 NC_008750.1 TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO4576 O-succinylbenzoic acid--CoA ligase; o-succinylbenzoate--CoA ligase 4472740 4661303 Sputw3181_3901 Shewanella sp. W3-18-1 o-succinylbenzoate--CoA ligase YP_965259.1 4471328 D 351745 CDS YP_965260.1 120600686 4661267 complement(4472756..4473976) 1 NC_008750.1 PFAM: EAL domain protein; response regulator receiver; KEGG: pau:PA14_12810 probable two-component response regulator; response regulator receiver modulated diguanylate phosphodiesterase 4473976 4661267 Sputw3181_3902 Shewanella sp. W3-18-1 response regulator receiver modulated diguanylate phosphodiesterase YP_965260.1 4472756 R 351745 CDS YP_965261.1 120600687 4661291 4474306..4474932 1 NC_008750.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pfo:Pfl_4515 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 4474932 4661291 Sputw3181_3903 Shewanella sp. W3-18-1 two component LuxR family transcriptional regulator YP_965261.1 4474306 D 351745 CDS YP_965262.1 120600688 4661301 4474929..4478498 1 NC_008750.1 KEGG: psb:Psyr_2113 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold domain protein; SMART: extracellular solute-binding protein, family 3; multi-sensor hybrid histidine kinase 4478498 4661301 Sputw3181_3904 Shewanella sp. W3-18-1 multi-sensor hybrid histidine kinase YP_965262.1 4474929 D 351745 CDS YP_965263.1 120600689 4661271 complement(4478555..4479235) 1 NC_008750.1 PFAM: pili assembly chaperone; KEGG: rme:Rmet_1663 pili assembly chaperone; pili assembly chaperone 4479235 4661271 Sputw3181_3905 Shewanella sp. W3-18-1 pili assembly chaperone YP_965263.1 4478555 R 351745 CDS YP_965264.1 120600690 4661288 complement(4479255..4480580) 1 NC_008750.1 KEGG: yps:YPTB0157 hypothetical protein; hypothetical protein 4480580 4661288 Sputw3181_3906 Shewanella sp. W3-18-1 hypothetical protein YP_965264.1 4479255 R 351745 CDS YP_965265.1 120600691 4661261 complement(4480591..4483110) 1 NC_008750.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pae:PA2130 probable fimbrial biogenesis usher protein; fimbrial biogenesis outer membrane usher protein 4483110 4661261 Sputw3181_3907 Shewanella sp. W3-18-1 fimbrial biogenesis outer membrane usher protein YP_965265.1 4480591 R 351745 CDS YP_965266.1 120600692 4661252 complement(4483191..4483937) 1 NC_008750.1 PFAM: pili assembly chaperone; KEGG: pau:PA14_37040 chaperone CupA2; pili assembly chaperone 4483937 4661252 Sputw3181_3908 Shewanella sp. W3-18-1 pili assembly chaperone YP_965266.1 4483191 R 351745 CDS YP_965267.1 120600693 4661263 complement(4484006..4484536) 1 NC_008750.1 PFAM: Fimbrial protein; KEGG: bam:Bamb_2833 fimbrial protein; fimbrial protein 4484536 4661263 Sputw3181_3909 Shewanella sp. W3-18-1 fimbrial protein YP_965267.1 4484006 R 351745 CDS YP_965268.1 120600694 4661239 complement(4486067..4486924) 1 NC_008750.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 4486924 4661239 Sputw3181_3910 Shewanella sp. W3-18-1 RNA polymerase factor sigma-32 YP_965268.1 4486067 R 351745 CDS YP_965269.1 120600695 4661231 complement(4487172..4488137) 1 NC_008750.1 PFAM: protein of unknown function DUF214; KEGG: she:Shewmr4_3772 protein of unknown function DUF214; hypothetical protein 4488137 4661231 Sputw3181_3911 Shewanella sp. W3-18-1 hypothetical protein YP_965269.1 4487172 R 351745 CDS YP_965270.1 120600696 4661234 complement(4488134..4488850) 1 NC_008750.1 KEGG: shm:Shewmr7_3846 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 4488850 4661234 Sputw3181_3912 Shewanella sp. W3-18-1 cell division ATP-binding protein FtsE YP_965270.1 4488134 R 351745 CDS YP_965271.1 120600697 4661191 complement(4488854..4490296) 1 NC_008750.1 KEGG: son:SO4586 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 4490296 4661191 Sputw3181_3913 Shewanella sp. W3-18-1 signal recognition particle-docking protein FtsY YP_965271.1 4488854 R 351745 CDS YP_965272.1 120600698 4661226 4490510..4491175 1 NC_008750.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: she:Shewmr4_3775 putative methyltransferase; putative methyltransferase 4491175 4661226 Sputw3181_3914 Shewanella sp. W3-18-1 putative methyltransferase YP_965272.1 4490510 D 351745 CDS YP_965273.1 120600699 4661224 4491159..4491434 1 NC_008750.1 PFAM: protein of unknown function DUF1145; KEGG: son:SO4588 hypothetical protein; hypothetical protein 4491434 4661224 Sputw3181_3915 Shewanella sp. W3-18-1 hypothetical protein YP_965273.1 4491159 D 351745 CDS YP_965274.1 120600700 4661212 complement(4491509..4492072) 1 NC_008750.1 PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO4591 tetraheme cytochrome c; NapC/NirT cytochrome c domain-containing protein 4492072 4661212 Sputw3181_3916 Shewanella sp. W3-18-1 NapC/NirT cytochrome c domain-containing protein YP_965274.1 4491509 R 351745 CDS YP_965275.1 120600701 4659086 4492560..4493000 1 NC_008750.1 KEGG: son:SOA0156 hypothetical protein; hypothetical protein 4493000 4659086 Sputw3181_3917 Shewanella sp. W3-18-1 hypothetical protein YP_965275.1 4492560 D 351745 CDS YP_965276.1 120600702 4661193 4493252..4493512 1 NC_008750.1 KEGG: son:SOA0155 hypothetical protein; hypothetical protein 4493512 4661193 Sputw3181_3918 Shewanella sp. W3-18-1 hypothetical protein YP_965276.1 4493252 D 351745 CDS YP_965277.1 120600703 4659088 4493534..4495072 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SOA0154 heavy metal efflux protein, putative; RND family efflux transporter MFP subunit 4495072 4659088 Sputw3181_3919 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_965277.1 4493534 D 351745 CDS YP_965278.1 120600704 4660771 4495082..4498231 1 NC_008750.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SOA0153 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 4498231 4660771 Sputw3181_3920 Shewanella sp. W3-18-1 CzcA family heavy metal efflux protein YP_965278.1 4495082 D 351745 CDS YP_965279.1 120600705 4661473 complement(4498327..4499898) 1 NC_008750.1 KEGG: gme:Gmet_1465 hypothetical protein; hypothetical protein 4499898 4661473 Sputw3181_3921 Shewanella sp. W3-18-1 hypothetical protein YP_965279.1 4498327 R 351745 CDS YP_965280.1 120600706 4660626 4500221..4501780 1 NC_008750.1 PFAM: AbgT putative transporter; short chain fatty acid transporter; KEGG: son:SO0160 transporter, putative; transporter AbgT 4501780 4660626 Sputw3181_3922 Shewanella sp. W3-18-1 transporter AbgT YP_965280.1 4500221 D 351745 CDS YP_965281.1 120600707 4660620 4501794..4502279 1 NC_008750.1 hypothetical protein 4502279 4660620 Sputw3181_3923 Shewanella sp. W3-18-1 hypothetical protein YP_965281.1 4501794 D 351745 CDS YP_965282.1 120600708 4660383 4502734..4503984 1 NC_008750.1 PFAM: sodium:dicarboxylate symporter; KEGG: she:Shewmr4_0147 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 4503984 4660383 Sputw3181_3924 Shewanella sp. W3-18-1 sodium:dicarboxylate symporter YP_965282.1 4502734 D 351745 CDS YP_965283.1 120600709 4660380 4504237..4505352 1 NC_008750.1 KEGG: shm:Shewmr7_0141 hypothetical protein; hypothetical protein 4505352 4660380 Sputw3181_3925 Shewanella sp. W3-18-1 hypothetical protein YP_965283.1 4504237 D 351745 CDS YP_965284.1 120600710 4660375 4505512..4507503 1 NC_008750.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: she:Shewmr4_0145 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 4507503 4660375 Sputw3181_3926 Shewanella sp. W3-18-1 peptidase M14, carboxypeptidase A YP_965284.1 4505512 D 351745 CDS YP_965285.1 120600711 4660583 complement(4507529..4508296) 1 NC_008750.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_0139 methyltransferase type 11; type 12 methyltransferase 4508296 4660583 Sputw3181_3927 Shewanella sp. W3-18-1 type 12 methyltransferase YP_965285.1 4507529 R 351745 CDS YP_965286.1 120600712 4660562 4508571..4509344 1 NC_008750.1 KEGG: shm:Shewmr7_0138 lipoprotein, putative; putative lipoprotein 4509344 4660562 Sputw3181_3928 Shewanella sp. W3-18-1 putative lipoprotein YP_965286.1 4508571 D 351745 CDS YP_965287.1 120600713 4660355 4509619..4510089 1 NC_008750.1 KEGG: shm:Shewmr7_0137 hypothetical protein; hypothetical protein 4510089 4660355 Sputw3181_3929 Shewanella sp. W3-18-1 hypothetical protein YP_965287.1 4509619 D 351745 CDS YP_965288.1 120600714 4660338 4510152..4510586 1 NC_008750.1 hypothetical protein 4510586 4660338 Sputw3181_3930 Shewanella sp. W3-18-1 hypothetical protein YP_965288.1 4510152 D 351745 CDS YP_965289.1 120600715 4659824 4510683..4512293 1 NC_008750.1 KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 4512293 4659824 Sputw3181_3931 Shewanella sp. W3-18-1 IS4 family transposase YP_965289.1 4510683 D 351745 CDS YP_965290.1 120600716 4660012 complement(4513020..4513550) 1 NC_008750.1 KEGG: vch:VCA0487 hypothetical protein; hypothetical protein 4513550 4660012 Sputw3181_3932 Shewanella sp. W3-18-1 hypothetical protein YP_965290.1 4513020 R 351745 CDS YP_965291.1 120600717 4661280 complement(4513547..4513816) 1 NC_008750.1 KEGG: vch:VCA0486 hypothetical protein; hypothetical protein 4513816 4661280 Sputw3181_3933 Shewanella sp. W3-18-1 hypothetical protein YP_965291.1 4513547 R 351745 CDS YP_965292.1 120600718 4659797 complement(4514193..4514747) 1 NC_008750.1 PFAM: glycosyl transferase, family 51; KEGG: gbe:GbCGDNIH1_0281 multimodular transpeptidase-transglycosylase PBP 1A; glycosyl transferase family protein 4514747 4659797 Sputw3181_3934 Shewanella sp. W3-18-1 glycosyl transferase family protein YP_965292.1 4514193 R 351745 CDS YP_965293.1 120600719 4659938 complement(4515703..4516431) 1 NC_008750.1 KEGG: son:SO0148 hypothetical protein; hypothetical protein 4516431 4659938 Sputw3181_3935 Shewanella sp. W3-18-1 hypothetical protein YP_965293.1 4515703 R 351745 CDS YP_965294.1 120600720 4661196 complement(4516903..4517286) 1 NC_008750.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: son:SO0145 hypothetical URI domain endonuclease; excinuclease ABC subunit C 4517286 4661196 Sputw3181_3936 Shewanella sp. W3-18-1 excinuclease ABC subunit C YP_965294.1 4516903 R 351745 CDS YP_965295.1 120600721 4659914 complement(4517297..4519432) 1 NC_008750.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: she:Shewmr4_0136 oligopeptidase B; oligopeptidase B 4519432 4659914 Sputw3181_3937 Shewanella sp. W3-18-1 oligopeptidase B YP_965295.1 4517297 R 351745 CDS YP_965296.1 120600722 4659434 4520017..4520670 1 NC_008750.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 4520670 ribB 4659434 ribB Shewanella sp. W3-18-1 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_965296.1 4520017 D 351745 CDS YP_965297.1 120600723 4661752 4521162..4524395 1 NC_008750.1 KEGG: shm:Shewmr7_0128 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 4524395 4661752 Sputw3181_3939 Shewanella sp. W3-18-1 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_965297.1 4521162 D 351745 CDS YP_965298.1 120600724 4659420 complement(4524458..4524994) 1 NC_008750.1 PFAM: Ferritin, Dps family protein; KEGG: son:SO0139 ferritin; Ferritin, Dps family protein 4524994 4659420 Sputw3181_3940 Shewanella sp. W3-18-1 Ferritin, Dps family protein YP_965298.1 4524458 R 351745 CDS YP_965299.1 120600725 4661784 4525336..4526589 1 NC_008750.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: shm:Shewmr7_0126 molybdenum cofactor synthesis domain; molybdenum cofactor synthesis domain-containing protein 4526589 4661784 Sputw3181_3941 Shewanella sp. W3-18-1 molybdenum cofactor synthesis domain-containing protein YP_965299.1 4525336 D 351745 CDS YP_965300.1 120600726 4659350 4526602..4527360 1 NC_008750.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 4527360 4659350 Sputw3181_3942 Shewanella sp. W3-18-1 molybdopterin biosynthesis protein MoeB YP_965300.1 4526602 D 351745 CDS YP_965301.1 120600727 4661691 4527428..4528090 1 NC_008750.1 KEGG: she:Shewmr4_0130 hypothetical protein; hypothetical protein 4528090 4661691 Sputw3181_3943 Shewanella sp. W3-18-1 hypothetical protein YP_965301.1 4527428 D 351745 CDS YP_965302.1 120600728 4661330 complement(4528211..4529284) 1 NC_008750.1 PFAM: protein of unknown function DUF890; KEGG: shm:Shewmr7_0122 protein of unknown function DUF890; putative SAM-dependent methyltransferase 4529284 4661330 Sputw3181_3944 Shewanella sp. W3-18-1 putative SAM-dependent methyltransferase YP_965302.1 4528211 R 351745 CDS YP_965303.1 120600729 4659309 complement(4529341..4529763) 1 NC_008750.1 PFAM: flagellar basal body-associated protein FliL; KEGG: she:Shewmr4_0127 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein 4529763 4659309 Sputw3181_3945 Shewanella sp. W3-18-1 flagellar basal body-associated protein FliL-like protein YP_965303.1 4529341 R 351745 CDS YP_965304.1 120600730 4659271 4529878..4530438 1 NC_008750.1 PFAM: Chorismate lyase; KEGG: son:SO0131 putative chorismate--pyruvate lyase; chorismate lyase 4530438 4659271 Sputw3181_3946 Shewanella sp. W3-18-1 chorismate lyase YP_965304.1 4529878 D 351745 CDS YP_965305.1 120600731 4659057 complement(4530515..4533106) 1 NC_008750.1 PFAM: PKD domain containing protein; peptidase M6, immune inhibitor A; KEGG: shm:Shewmr7_0119 peptidase M6, immune inhibitor A; peptidase M6, immune inhibitor A 4533106 4659057 Sputw3181_3947 Shewanella sp. W3-18-1 peptidase M6, immune inhibitor A YP_965305.1 4530515 R 351745 CDS YP_965306.1 120600732 4659056 complement(4533412..4534005) 1 NC_008750.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO0129 conserved hypothetical protein TIGR00427; multiple antibiotic resistance (MarC)-like protein 4534005 4659056 Sputw3181_3948 Shewanella sp. W3-18-1 multiple antibiotic resistance (MarC)-like protein YP_965306.1 4533412 R 351745 CDS YP_965307.1 120600733 4661821 4534412..4536025 1 NC_008750.1 KEGG: shm:Shewmr7_0117 hypothetical protein; hypothetical protein 4536025 4661821 Sputw3181_3949 Shewanella sp. W3-18-1 hypothetical protein YP_965307.1 4534412 D 351745 CDS YP_965308.1 120600734 4661603 4536088..4536870 1 NC_008750.1 PFAM: protein of unknown function DUF833; KEGG: shm:Shewmr7_0116 protein of unknown function DUF833; hypothetical protein 4536870 4661603 Sputw3181_3950 Shewanella sp. W3-18-1 hypothetical protein YP_965308.1 4536088 D 351745 CDS YP_965309.1 120600735 4659172 complement(4536879..4537331) 1 NC_008750.1 KEGG: shm:Shewmr7_0115 hypothetical protein; hypothetical protein 4537331 4659172 Sputw3181_3951 Shewanella sp. W3-18-1 hypothetical protein YP_965309.1 4536879 R 351745 CDS YP_965310.1 120600736 4658603 4537452..4538015 1 NC_008750.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: shm:Shewmr7_0114 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 4538015 4658603 Sputw3181_3952 Shewanella sp. W3-18-1 phospholipid/glycerol acyltransferase YP_965310.1 4537452 D 351745 CDS YP_965311.1 120600737 4658572 4538036..4538659 1 NC_008750.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_0113 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 4538659 4658572 Sputw3181_3953 Shewanella sp. W3-18-1 lysine exporter protein LysE/YggA YP_965311.1 4538036 D 351745 CDS YP_965312.1 120600738 4658727 complement(4538656..4539924) 1 NC_008750.1 PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_0112 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4539924 4658727 Sputw3181_3954 Shewanella sp. W3-18-1 mechanosensitive ion channel protein MscS YP_965312.1 4538656 R 351745 CDS YP_965313.1 120600739 4661205 complement(4540073..4540465) 1 NC_008750.1 PFAM: protein of unknown function DUF1090; KEGG: son:SO0119 hypothetical protein; hypothetical protein 4540465 4661205 Sputw3181_3955 Shewanella sp. W3-18-1 hypothetical protein YP_965313.1 4540073 R 351745 CDS YP_965314.1 120600740 4658683 complement(4540510..4541034) 1 NC_008750.1 PFAM: Redoxin domain protein; KEGG: ppr:PBPRB1492 hypothetical thioredoxin; redoxin domain-containing protein 4541034 4658683 Sputw3181_3956 Shewanella sp. W3-18-1 redoxin domain-containing protein YP_965314.1 4540510 R 351745 CDS YP_965315.1 120600741 4658679 complement(4541060..4541944) 1 NC_008750.1 PFAM: DSBA oxidoreductase; KEGG: vfi:VF2492 copper sensitivity protein ScsC; DSBA oxidoreductase 4541944 4658679 Sputw3181_3957 Shewanella sp. W3-18-1 DSBA oxidoreductase YP_965315.1 4541060 R 351745 CDS YP_965316.1 120600742 4661147 complement(4542066..4544177) 1 NC_008750.1 KEGG: vpa:VP2006 putative suppressor for copper-sensitivity B precursor; putative suppressor for copper-sensitivity B 4544177 4661147 Sputw3181_3958 Shewanella sp. W3-18-1 putative suppressor for copper-sensitivity B YP_965316.1 4542066 R 351745 CDS YP_965317.1 120600743 4657739 complement(4544328..4544741) 1 NC_008750.1 hypothetical protein 4544741 4657739 Sputw3181_3959 Shewanella sp. W3-18-1 hypothetical protein YP_965317.1 4544328 R 351745 CDS YP_965318.1 120600744 4657729 4545013..4545687 1 NC_008750.1 KEGG: shm:Shewmr7_0110 hypothetical protein; hypothetical protein 4545687 4657729 Sputw3181_3960 Shewanella sp. W3-18-1 hypothetical protein YP_965318.1 4545013 D 351745 CDS YP_965319.1 120600745 4657727 complement(4545684..4546115) 1 NC_008750.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppr:PBPRA1918 putative glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 4546115 4657727 Sputw3181_3961 Shewanella sp. W3-18-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_965319.1 4545684 R 351745 CDS YP_965320.1 120600746 4658131 complement(4546134..4546772) 1 NC_008750.1 KEGG: shm:Shewmr7_0108 hypothetical protein; hypothetical protein 4546772 4658131 Sputw3181_3962 Shewanella sp. W3-18-1 hypothetical protein YP_965320.1 4546134 R 351745 CDS YP_965321.1 120600747 4661351 4547109..4548431 1 NC_008750.1 PFAM: peptidase M48, Ste24p; KEGG: son:SO0110 hypothetical protease; peptidase M48, Ste24p 4548431 4661351 Sputw3181_3963 Shewanella sp. W3-18-1 peptidase M48, Ste24p YP_965321.1 4547109 D 351745 CDS YP_965322.1 120600748 4657772 complement(4548696..4548986) 1 NC_008750.1 hypothetical protein 4548986 4657772 Sputw3181_3964 Shewanella sp. W3-18-1 hypothetical protein YP_965322.1 4548696 R 351745 CDS YP_965323.1 120600749 4661244 complement(4549115..4549540) 1 NC_008750.1 KEGG: pol:Bpro_1650 hypothetical protein; hypothetical protein 4549540 4661244 Sputw3181_3965 Shewanella sp. W3-18-1 hypothetical protein YP_965323.1 4549115 R 351745 CDS YP_965324.1 120600750 4657711 complement(4550680..4551459) 1 NC_008750.1 PFAM: protein of unknown function DUF548; KEGG: shm:Shewmr7_3921 protein of unknown function DUF548; hypothetical protein 4551459 4657711 Sputw3181_3966 Shewanella sp. W3-18-1 hypothetical protein YP_965324.1 4550680 R 351745 CDS YP_965325.1 120600751 4661469 4551680..4553944 1 NC_008750.1 PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pat:Patl_2246 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 4553944 4661469 Sputw3181_3967 Shewanella sp. W3-18-1 diguanylate cyclase/phosphodiesterase YP_965325.1 4551680 D 351745 CDS YP_965326.1 120600752 4658054 4554081..4554926 1 NC_008750.1 PFAM: protein of unknown function DUF519; KEGG: shm:Shewmr7_3922 protein of unknown function DUF519; hypothetical protein 4554926 4658054 Sputw3181_3968 Shewanella sp. W3-18-1 hypothetical protein YP_965326.1 4554081 D 351745 CDS YP_965327.1 120600753 4658041 complement(4555251..4556000) 1 NC_008750.1 PFAM: Lytic transglycosylase, catalytic; KEGG: son:SO4660 transglycosylase SLT domain protein; lytic transglycosylase, catalytic 4556000 4658041 Sputw3181_3969 Shewanella sp. W3-18-1 lytic transglycosylase, catalytic YP_965327.1 4555251 R 351745 CDS YP_965328.1 120600754 4657701 complement(4556107..4556670) 1 NC_008750.1 PFAM: LemA family protein; KEGG: son:SO4662 lemA protein; LemA family protein 4556670 4657701 Sputw3181_3970 Shewanella sp. W3-18-1 LemA family protein YP_965328.1 4556107 R 351745 CDS YP_965329.1 120600755 4657966 4557234..4558769 1 NC_008750.1 PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; KEGG: she:Shewmr4_3833 AbgT putative transporter; transporter AbgT 4558769 4657966 Sputw3181_3971 Shewanella sp. W3-18-1 transporter AbgT YP_965329.1 4557234 D 351745 CDS YP_965330.1 120600756 4657960 complement(4558850..4559170) 1 NC_008750.1 KEGG: shm:Shewmr7_3927 hypothetical protein; hypothetical protein 4559170 4657960 Sputw3181_3972 Shewanella sp. W3-18-1 hypothetical protein YP_965330.1 4558850 R 351745 CDS YP_965331.1 120600757 4657952 complement(4559203..4559490) 1 NC_008750.1 KEGG: she:Shewmr4_3835 hypothetical protein; hypothetical protein 4559490 4657952 Sputw3181_3973 Shewanella sp. W3-18-1 hypothetical protein YP_965331.1 4559203 R 351745 CDS YP_965332.1 120600758 4657935 complement(4559619..4562753) 1 NC_008750.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3929 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 4562753 4657935 Sputw3181_3974 Shewanella sp. W3-18-1 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_965332.1 4559619 R 351745 CDS YP_965333.1 120600759 4657784 complement(4562763..4563908) 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_3837 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 4563908 4657784 Sputw3181_3975 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_965333.1 4562763 R 351745 CDS YP_965334.1 120600760 4657783 4564679..4565326 1 NC_008750.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: she:Shewmr4_3840 glutathione S-transferase, N-terminal domain protein; glutathione S-transferase domain-containing protein 4565326 4657783 Sputw3181_3976 Shewanella sp. W3-18-1 glutathione S-transferase domain-containing protein YP_965334.1 4564679 D 351745 CDS YP_965335.1 120600761 4658362 complement(4565352..4565882) 1 NC_008750.1 KEGG: shm:Shewmr7_3934 hypothetical protein; hypothetical protein 4565882 4658362 Sputw3181_3977 Shewanella sp. W3-18-1 hypothetical protein YP_965335.1 4565352 R 351745 CDS YP_965336.1 120600762 4658584 complement(4566058..4568097) 1 NC_008750.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO4699 oligopeptidase A; oligopeptidase A 4568097 4658584 Sputw3181_3978 Shewanella sp. W3-18-1 oligopeptidase A YP_965336.1 4566058 R 351745 CDS YP_965337.1 120600763 4658395 4568407..4569195 1 NC_008750.1 KEGG: son:SO4700 hypothetical protein; hypothetical protein 4569195 4658395 Sputw3181_3979 Shewanella sp. W3-18-1 hypothetical protein YP_965337.1 4568407 D 351745 CDS YP_965338.1 120600764 4657792 4569322..4569876 1 NC_008750.1 KEGG: son:SO4701 hypothetical protein; hypothetical protein 4569876 4657792 Sputw3181_3980 Shewanella sp. W3-18-1 hypothetical protein YP_965338.1 4569322 D 351745 CDS YP_965339.1 120600765 4657806 4570007..4571365 1 NC_008750.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 4571365 4657806 Sputw3181_3981 Shewanella sp. W3-18-1 glutathione reductase YP_965339.1 4570007 D 351745 CDS YP_965340.1 120600766 4657839 4571747..4574791 1 NC_008750.1 KEGG: ret:RHE_CH02008 hypothetical protein; hypothetical protein 4574791 4657839 Sputw3181_3982 Shewanella sp. W3-18-1 hypothetical protein YP_965340.1 4571747 D 351745 CDS YP_965341.1 120600767 4657844 4575355..4576164 1 NC_008750.1 hypothetical protein 4576164 4657844 Sputw3181_3983 Shewanella sp. W3-18-1 hypothetical protein YP_965341.1 4575355 D 351745 CDS YP_965342.1 120600768 4657869 4576378..4577301 1 NC_008750.1 PFAM: transposase, IS4 family protein; KEGG: shm:Shewmr7_3098 transposase, IS4 family protein; transposase, IS4 family protein 4577301 4657869 Sputw3181_3984 Shewanella sp. W3-18-1 transposase, IS4 family protein YP_965342.1 4576378 D 351745 CDS YP_965343.1 120600769 4657873 4577571..4578908 1 NC_008750.1 PFAM: phage integrase family protein; KEGG: sdn:Sden_3590 transposase, putative; phage integrase family protein 4578908 4657873 Sputw3181_3985 Shewanella sp. W3-18-1 phage integrase family protein YP_965343.1 4577571 D 351745 CDS YP_965344.1 120600770 4657909 4578901..4580643 1 NC_008750.1 KEGG: sdn:Sden_3587 hypothetical protein; hypothetical protein 4580643 4657909 Sputw3181_3986 Shewanella sp. W3-18-1 hypothetical protein YP_965344.1 4578901 D 351745 CDS YP_965345.1 120600771 4657931 4580651..4582774 1 NC_008750.1 KEGG: sdn:Sden_3586 hypothetical protein; hypothetical protein 4582774 4657931 Sputw3181_3987 Shewanella sp. W3-18-1 hypothetical protein YP_965345.1 4580651 D 351745 CDS YP_965346.1 120600772 4657997 4582771..4583211 1 NC_008750.1 KEGG: sdn:Sden_3584 hypothetical protein; hypothetical protein 4583211 4657997 Sputw3181_3988 Shewanella sp. W3-18-1 hypothetical protein YP_965346.1 4582771 D 351745 CDS YP_965347.1 120600773 4658024 4583326..4583586 1 NC_008750.1 KEGG: sdn:Sden_3583 hypothetical protein; hypothetical protein 4583586 4658024 Sputw3181_3989 Shewanella sp. W3-18-1 hypothetical protein YP_965347.1 4583326 D 351745 CDS YP_965348.1 120600774 4658070 complement(4583778..4584212) 1 NC_008750.1 KEGG: vpa:VP1086 hypothetical protein; hypothetical protein 4584212 4658070 Sputw3181_3990 Shewanella sp. W3-18-1 hypothetical protein YP_965348.1 4583778 R 351745 CDS YP_965349.1 120600775 4658082 complement(4584212..4585408) 1 NC_008750.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: fra:Francci3_0885 UBA/ThiF-type NAD/FAD binding fold; hypothetical protein 4585408 4658082 Sputw3181_3991 Shewanella sp. W3-18-1 hypothetical protein YP_965349.1 4584212 R 351745 CDS YP_965350.1 120600776 4658133 complement(4586084..4586626) 1 NC_008750.1 KEGG: rme:Rmet_3357 hypothetical protein; hypothetical protein 4586626 4658133 Sputw3181_3992 Shewanella sp. W3-18-1 hypothetical protein YP_965350.1 4586084 R 351745 CDS YP_965351.1 120600777 4658147 complement(4586669..4587754) 1 NC_008750.1 KEGG: shm:Shewmr7_1788 ATP-binding region, ATPase-like protein; ATP-binding region, ATPase-like protein 4587754 4658147 Sputw3181_3993 Shewanella sp. W3-18-1 ATP-binding region, ATPase-like protein YP_965351.1 4586669 R 351745 CDS YP_965352.1 120600778 4658152 4588762..4590258 1 NC_008750.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: shm:Shewmr7_3940 sodium/proline symporter; sodium/proline symporter 4590258 4658152 Sputw3181_3994 Shewanella sp. W3-18-1 sodium/proline symporter YP_965352.1 4588762 D 351745 CDS YP_965353.1 120600779 4658167 4590267..4591367 1 NC_008750.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 4591367 4658167 Sputw3181_3995 Shewanella sp. W3-18-1 gamma-glutamyl kinase YP_965353.1 4590267 D 351745 CDS YP_965354.1 120600780 4658186 4591400..4592647 1 NC_008750.1 TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: shm:Shewmr7_3942 gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 4592647 4658186 Sputw3181_3996 Shewanella sp. W3-18-1 gamma-glutamyl phosphate reductase YP_965354.1 4591400 D 351745 CDS YP_965355.1 120600781 4658233 complement(4592773..4594314) 1 NC_008750.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 4594314 4658233 Sputw3181_3997 Shewanella sp. W3-18-1 histidine ammonia-lyase YP_965355.1 4592773 R 351745 CDS YP_965356.1 120600782 4657745 complement(4594367..4596034) 1 NC_008750.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 4596034 4657745 Sputw3181_3998 Shewanella sp. W3-18-1 urocanate hydratase YP_965356.1 4594367 R 351745 CDS YP_965357.1 120600783 4658239 complement(4596179..4596886) 1 NC_008750.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: she:Shewmr4_0098 transcriptional regulator, histidine utilization repressor, GntR family; histidine utilization repressor 4596886 4658239 Sputw3181_3999 Shewanella sp. W3-18-1 histidine utilization repressor YP_965357.1 4596179 R 351745 CDS YP_965358.1 120600784 4658291 4597121..4598347 1 NC_008750.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 4598347 4658291 Sputw3181_4000 Shewanella sp. W3-18-1 imidazolonepropionase YP_965358.1 4597121 D 351745 CDS YP_965359.1 120600785 4657767 complement(4598445..4599200) 1 NC_008750.1 PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: shm:Shewmr7_0091 FAD-binding 9, siderophore-interacting domain protein; siderophore-interacting protein 4599200 4657767 Sputw3181_4001 Shewanella sp. W3-18-1 siderophore-interacting protein YP_965359.1 4598445 R 351745 CDS YP_965360.1 120600786 4658993 complement(4599279..4599710) 1 NC_008750.1 PFAM: regulatory protein, MarR; KEGG: shm:Shewmr7_0090 transcriptional regulator, MarR family; MarR family transcriptional regulator 4599710 4658993 Sputw3181_4002 Shewanella sp. W3-18-1 MarR family transcriptional regulator YP_965360.1 4599279 R 351745 CDS YP_965361.1 120600787 4659047 complement(4599877..4600233) 1 NC_008750.1 KEGG: shm:Shewmr7_0143 hypothetical protein; hypothetical protein 4600233 4659047 Sputw3181_4003 Shewanella sp. W3-18-1 hypothetical protein YP_965361.1 4599877 R 351745 CDS YP_965362.1 120600788 4658624 complement(4600348..4600884) 1 NC_008750.1 KEGG: son:SO0090 hypothetical protein; hypothetical protein 4600884 4658624 Sputw3181_4004 Shewanella sp. W3-18-1 hypothetical protein YP_965362.1 4600348 R 351745 CDS YP_965363.1 120600789 4658647 complement(4601107..4601451) 1 NC_008750.1 hypothetical protein 4601451 4658647 Sputw3181_4005 Shewanella sp. W3-18-1 hypothetical protein YP_965363.1 4601107 R 351745 CDS YP_965364.1 120600790 4658677 4601611..4603434 1 NC_008750.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: csa:Csal_2061 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 4603434 4658677 Sputw3181_4006 Shewanella sp. W3-18-1 glycerophosphoryl diester phosphodiesterase YP_965364.1 4601611 D 351745 CDS YP_965365.1 120600791 4658678 complement(4603436..4603864) 1 NC_008750.1 KEGG: son:SO0085 hypothetical protein; hypothetical protein 4603864 4658678 Sputw3181_4007 Shewanella sp. W3-18-1 hypothetical protein YP_965365.1 4603436 R 351745 CDS YP_965366.1 120600792 4658409 4604245..4604925 1 NC_008750.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0084 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4604925 4658409 Sputw3181_4008 Shewanella sp. W3-18-1 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_965366.1 4604245 D 351745 CDS YP_965367.1 120600793 4658525 complement(4605010..4606134) 1 NC_008750.1 KEGG: sdn:Sden_0075 hypothetical protein; hypothetical protein 4606134 4658525 Sputw3181_4009 Shewanella sp. W3-18-1 hypothetical protein YP_965367.1 4605010 R 351745 CDS YP_965368.1 120600794 4658559 complement(4606470..4606865) 1 NC_008750.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: shm:Shewmr7_0084 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 4606865 4658559 Sputw3181_4010 Shewanella sp. W3-18-1 glutathione-dependent formaldehyde-activating protein YP_965368.1 4606470 R 351745 CDS YP_965369.1 120600795 4658739 4606987..4607427 1 NC_008750.1 PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_0081 thioesterase superfamily protein; thioesterase superfamily protein 4607427 4658739 Sputw3181_4011 Shewanella sp. W3-18-1 thioesterase superfamily protein YP_965369.1 4606987 D 351745 CDS YP_965370.1 120600796 4658746 4607497..4607760 1 NC_008750.1 KEGG: she:Shewmr4_0083 hypothetical protein; hypothetical protein 4607760 4658746 Sputw3181_4012 Shewanella sp. W3-18-1 hypothetical protein YP_965370.1 4607497 D 351745 CDS YP_965371.1 120600797 4658850 complement(4612821..4613237) 1 NC_008750.1 PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_0078 thioesterase superfamily protein; thioesterase superfamily protein 4613237 4658850 Sputw3181_4015 Shewanella sp. W3-18-1 thioesterase superfamily protein YP_965371.1 4612821 R 351745 CDS YP_965372.1 120600798 4658776 complement(4613364..4615820) 1 NC_008750.1 KEGG: she:Shewmr4_0079 MORN variant repeat protein; MORN repeat-containing protein 4615820 4658776 Sputw3181_4016 Shewanella sp. W3-18-1 MORN repeat-containing protein YP_965372.1 4613364 R 351745 CDS YP_965373.1 120600799 4658787 complement(4615964..4617760) 1 NC_008750.1 PFAM: AMP-dependent synthetase and ligase; KEGG: she:Shewmr4_0078 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4617760 4658787 Sputw3181_4017 Shewanella sp. W3-18-1 AMP-dependent synthetase and ligase YP_965373.1 4615964 R 351745 CDS YP_965374.1 120600800 4657979 complement(4617953..4619269) 1 NC_008750.1 KEGG: son:SO0074 hypothetical protein; hypothetical protein 4619269 4657979 Sputw3181_4018 Shewanella sp. W3-18-1 hypothetical protein YP_965374.1 4617953 R 351745 CDS YP_965375.1 120600801 4658853 complement(4619266..4620129) 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0073 ABC transporter, ATP-binding protein; ABC transporter-like protein 4620129 4658853 Sputw3181_4019 Shewanella sp. W3-18-1 ABC transporter-like protein YP_965375.1 4619266 R 351745 CDS YP_965376.1 120600802 4659793 complement(4620172..4620543) 1 NC_008750.1 PFAM: regulatory protein GntR, HTH; KEGG: son:SO0072 transcriptional regulator, GntR family; regulatory protein GntR 4620543 4659793 Sputw3181_4020 Shewanella sp. W3-18-1 regulatory protein GntR YP_965376.1 4620172 R 351745 CDS YP_965377.1 120600803 4659166 4620637..4622277 1 NC_008750.1 PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: she:Shewmr4_0074 TAP domain protein; TAP domain-containing protein 4622277 4659166 Sputw3181_4021 Shewanella sp. W3-18-1 TAP domain-containing protein YP_965377.1 4620637 D 351745 CDS YP_965378.1 120600804 4659021 4622281..4623015 1 NC_008750.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0070 ATP-binding transport protein NatA; ABC transporter-like protein 4623015 4659021 Sputw3181_4022 Shewanella sp. W3-18-1 ABC transporter-like protein YP_965378.1 4622281 D 351745 CDS YP_965379.1 120600805 4659064 4623098..4624237 1 NC_008750.1 KEGG: son:SO0069 transport protein, putative; transporter 4624237 4659064 Sputw3181_4023 Shewanella sp. W3-18-1 transporter YP_965379.1 4623098 D 351745 CDS YP_965380.1 120600806 4659284 4624317..4624565 1 NC_008750.1 KEGG: son:SO0068 hypothetical protein; hypothetical protein 4624565 4659284 Sputw3181_4024 Shewanella sp. W3-18-1 hypothetical protein YP_965380.1 4624317 D 351745 CDS YP_965381.1 120600807 4659303 complement(4624638..4625171) 1 NC_008750.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 4625171 mogA 4659303 mogA Shewanella sp. W3-18-1 molybdenum cofactor biosynthesis protein MogA YP_965381.1 4624638 R 351745 CDS YP_965382.1 120600808 4659335 complement(4625462..4625926) 1 NC_008750.1 PFAM: NLP/P60 protein; KEGG: shm:Shewmr7_0059 NLP/P60 protein; NLP/P60 protein 4625926 4659335 Sputw3181_4026 Shewanella sp. W3-18-1 NLP/P60 protein YP_965382.1 4625462 R 351745 CDS YP_965383.1 120600809 4659359 complement(4626113..4627195) 1 NC_008750.1 KEGG: eca:ECA0549 putative plasmid transfer protein; putative plasmid transfer protein 4627195 4659359 Sputw3181_4027 Shewanella sp. W3-18-1 putative plasmid transfer protein YP_965383.1 4626113 R 351745 CDS YP_965384.1 120600810 4659391 4627592..4628515 1 NC_008750.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: shm:Shewmr7_0053 pirin domain protein domain protein; pirin domain-containing protein 4628515 4659391 Sputw3181_4028 Shewanella sp. W3-18-1 pirin domain-containing protein YP_965384.1 4627592 D 351745 CDS YP_965385.1 120600811 4659393 4628753..4629799 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_0052 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4629799 4659393 Sputw3181_4029 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_965385.1 4628753 D 351745 CDS YP_965386.1 120600812 4659409 4629800..4630489 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO0059 transcriptional regulatory protein KdpE; two component transcriptional regulator 4630489 4659409 Sputw3181_4030 Shewanella sp. W3-18-1 two component transcriptional regulator YP_965386.1 4629800 D 351745 CDS YP_965387.1 120600813 4659416 4630532..4631230 1 NC_008750.1 PFAM: TrkA-N domain protein; KEGG: shm:Shewmr7_0050 TrkA-N domain protein; TrkA domain-containing protein 4631230 4659416 Sputw3181_4031 Shewanella sp. W3-18-1 TrkA domain-containing protein YP_965387.1 4630532 D 351745 CDS YP_965388.1 120600814 4659571 4631232..4632596 1 NC_008750.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: shm:Shewmr7_0049 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 4632596 4659571 Sputw3181_4032 Shewanella sp. W3-18-1 TrkH family potassium uptake protein YP_965388.1 4631232 D 351745 CDS YP_965389.1 120600815 4659889 4632897..4633361 1 NC_008750.1 KEGG: sde:Sde_2764 hypothetical protein; hypothetical protein 4633361 4659889 Sputw3181_4033 Shewanella sp. W3-18-1 hypothetical protein YP_965389.1 4632897 D 351745 CDS YP_965390.1 120600816 4659089 complement(4633435..4634811) 1 NC_008750.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_0049 HI0933 family protein; hypothetical protein 4634811 4659089 Sputw3181_4034 Shewanella sp. W3-18-1 hypothetical protein YP_965390.1 4633435 R 351745 CDS YP_965391.1 120600817 4659626 complement(4634924..4635940) 1 NC_008750.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 4635940 gpsA 4659626 gpsA Shewanella sp. W3-18-1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_965391.1 4634924 R 351745 CDS YP_965392.1 120600818 4659924 complement(4635945..4636430) 1 NC_008750.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 4636430 4659924 Sputw3181_4036 Shewanella sp. W3-18-1 preprotein translocase subunit SecB YP_965392.1 4635945 R 351745 CDS YP_965393.1 120600819 4659951 complement(4636689..4637123) 1 NC_008750.1 PFAM: Rhodanese domain protein; KEGG: shm:Shewmr7_0044 rhodanese domain protein; rhodanese domain-containing protein 4637123 4659951 Sputw3181_4037 Shewanella sp. W3-18-1 rhodanese domain-containing protein YP_965393.1 4636689 R 351745 CDS YP_965394.1 120600820 4659952 4637390..4638934 1 NC_008750.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 4638934 4659952 Sputw3181_4038 Shewanella sp. W3-18-1 phosphoglyceromutase YP_965394.1 4637390 D 351745 CDS YP_965395.1 120600821 4660047 4638945..4640078 1 NC_008750.1 PFAM: peptidase M23B; KEGG: shm:Shewmr7_0042 peptidase M23B; peptidase M23B 4640078 4660047 Sputw3181_4039 Shewanella sp. W3-18-1 peptidase M23B YP_965395.1 4638945 D 351745 CDS YP_965396.1 120600822 4660054 4640108..4641316 1 NC_008750.1 KEGG: she:Shewmr4_0043 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 4641316 4660054 Sputw3181_4040 Shewanella sp. W3-18-1 carboxyl-terminal protease YP_965396.1 4640108 D 351745 CDS YP_965397.1 120600823 4660057 4641326..4642069 1 NC_008750.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: shm:Shewmr7_0040 protein of unknown function DUF610, YibQ; hypothetical protein 4642069 4660057 Sputw3181_4041 Shewanella sp. W3-18-1 hypothetical protein YP_965397.1 4641326 D 351745 CDS YP_965398.1 120600824 4660079 complement(4642055..4642510) 1 NC_008750.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: she:Shewmr4_0041 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 4642510 4660079 Sputw3181_4042 Shewanella sp. W3-18-1 BadM/Rrf2 family transcriptional regulator YP_965398.1 4642055 R 351745 CDS YP_965399.1 120600825 4660118 complement(4642533..4642787) 1 NC_008750.1 PFAM: protein of unknown function UPF0153; KEGG: son:SO0044 hypothetical protein; hypothetical protein 4642787 4660118 Sputw3181_4043 Shewanella sp. W3-18-1 hypothetical protein YP_965399.1 4642533 R 351745 CDS YP_965400.1 120600826 4658022 complement(4648831..4650258) 1 NC_008750.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4737 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 4650258 4658022 Sputw3181_4044 Shewanella sp. W3-18-1 4Fe-4S ferredoxin YP_965400.1 4648831 R 351745 CDS YP_965401.1 120600827 4660436 4650350..4650700 1 NC_008750.1 KEGG: she:Shewmr4_3917 hypothetical protein; hypothetical protein 4650700 4660436 Sputw3181_4045 Shewanella sp. W3-18-1 hypothetical protein YP_965401.1 4650350 D 351745 CDS YP_965402.1 120600828 4660459 4650819..4651721 1 NC_008750.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 4651721 4660459 Sputw3181_4046 Shewanella sp. W3-18-1 naphthoate synthase YP_965402.1 4650819 D 351745 CDS YP_965403.1 120600829 4660472 4651905..4652108 1 NC_008750.1 KEGG: she:Shewmr4_3919 hypothetical protein; hypothetical protein 4652108 4660472 Sputw3181_4047 Shewanella sp. W3-18-1 hypothetical protein YP_965403.1 4651905 D 351745 CDS YP_965404.1 120600830 4660316 complement(4652217..4654046) 1 NC_008750.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 4654046 4660316 Sputw3181_4048 Shewanella sp. W3-18-1 glucosamine--fructose-6-phosphate aminotransferase YP_965404.1 4652217 R 351745 CDS YP_965405.1 120600831 4660487 complement(4654091..4654861) 1 NC_008750.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: son:SO4742 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 4654861 4660487 Sputw3181_4049 Shewanella sp. W3-18-1 DeoR family transcriptional regulator YP_965405.1 4654091 R 351745 CDS YP_965406.1 120600832 4660319 complement(4655062..4657167) 1 NC_008750.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4743 TonB-dependent receptor, putative; TonB-dependent siderophore receptor 4657167 4660319 Sputw3181_4050 Shewanella sp. W3-18-1 TonB-dependent siderophore receptor YP_965406.1 4655062 R 351745 CDS YP_965407.1 120600833 4660528 complement(4657444..4658808) 1 NC_008750.1 KEGG: she:Shewmr4_3923 UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; UDP-N-acetylglucosamine pyrophosphorylase 4658808 4660528 Sputw3181_4051 Shewanella sp. W3-18-1 UDP-N-acetylglucosamine pyrophosphorylase YP_965407.1 4657444 R 351745 CDS YP_965408.1 120600834 4660531 complement(4659006..4659434) 1 NC_008750.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 4659434 atpC 4660531 atpC Shewanella sp. W3-18-1 F0F1 ATP synthase subunit epsilon YP_965408.1 4659006 R 351745 CDS YP_965409.1 120600835 4660584 complement(4659469..4660860) 1 NC_008750.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 4660860 4660584 Sputw3181_4053 Shewanella sp. W3-18-1 F0F1 ATP synthase subunit beta YP_965409.1 4659469 R 351745 CDS YP_965410.1 120600836 4660608 complement(4660896..4661756) 1 NC_008750.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 4661756 4660608 Sputw3181_4054 Shewanella sp. W3-18-1 F0F1 ATP synthase subunit gamma YP_965410.1 4660896 R 351745 CDS YP_965411.1 120600837 4660624 complement(4661807..4663348) 1 NC_008750.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 4663348 4660624 Sputw3181_4055 Shewanella sp. W3-18-1 F0F1 ATP synthase subunit alpha YP_965411.1 4661807 R 351745 CDS YP_965412.1 120600838 4660644 complement(4663363..4663896) 1 NC_008750.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 4663896 4660644 Sputw3181_4056 Shewanella sp. W3-18-1 F0F1 ATP synthase subunit delta YP_965412.1 4663363 R 351745 CDS YP_965413.1 120600839 4660708 complement(4663912..4664382) 1 NC_008750.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 4664382 4660708 Sputw3181_4057 Shewanella sp. W3-18-1 F0F1 ATP synthase subunit B YP_965413.1 4663912 R 351745 CDS YP_965414.1 120600840 4660769 complement(4664410..4664664) 1 NC_008750.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 4664664 4660769 Sputw3181_4058 Shewanella sp. W3-18-1 F0F1 ATP synthase subunit C YP_965414.1 4664410 R 351745 CDS YP_965415.1 120600841 4660814 complement(4664700..4665521) 1 NC_008750.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 4665521 4660814 Sputw3181_4059 Shewanella sp. W3-18-1 F0F1 ATP synthase subunit A YP_965415.1 4664700 R 351745 CDS YP_965416.1 120600842 4660826 complement(4665534..4665989) 1 NC_008750.1 PFAM: ATP synthase I chain; KEGG: shm:Shewmr7_4024 ATP synthase I chain; ATP synthase I chain 4665989 4660826 Sputw3181_4060 Shewanella sp. W3-18-1 ATP synthase I chain YP_965416.1 4665534 R 351745 CDS YP_965417.1 120600843 4660849 complement(4666143..4667021) 1 NC_008750.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: shm:Shewmr7_4025 ParB-like partition proteins; parB-like partition protein 4667021 4660849 Sputw3181_4061 Shewanella sp. W3-18-1 parB-like partition protein YP_965417.1 4666143 R 351745 CDS YP_965418.1 120600844 4660952 complement(4667031..4667819) 1 NC_008750.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: shm:Shewmr7_4026 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 4667819 4660952 Sputw3181_4062 Shewanella sp. W3-18-1 cobyrinic acid a,c-diamide synthase YP_965418.1 4667031 R 351745 CDS YP_965419.1 120600845 4660890 complement(4667894..4668514) 1 NC_008750.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4668514 gidB 4660890 gidB Shewanella sp. W3-18-1 16S rRNA methyltransferase GidB YP_965419.1 4667894 R 351745 CDS YP_965420.1 120600846 4660948 complement(4668632..4670521) 1 NC_008750.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 4670521 4660948 Sputw3181_4064 Shewanella sp. W3-18-1 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_965420.1 4668632 R 351745 CDS YP_965421.1 120600847 4661625 complement(4670961..4671422) 1 NC_008750.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 4671422 4661625 Sputw3181_4065 Shewanella sp. W3-18-1 flavodoxin YP_965421.1 4670961 R 351745 CDS YP_965422.1 120600848 4661195 4671582..4673135 1 NC_008750.1 PFAM: TGF-beta receptor, type I/II extracellular region; KEGG: she:Shewmr4_3938 TGF-beta receptor, type I/II extracellular region; TGF-beta receptor, type I/II extracellular region 4673135 4661195 Sputw3181_4066 Shewanella sp. W3-18-1 TGF-beta receptor, type I/II extracellular region YP_965422.1 4671582 D 351745 CDS YP_965423.1 120600849 4661129 complement(4673290..4676421) 1 NC_008750.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rso:RSp0312 probable multidrug efflux system transmembrane protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 4676421 4661129 Sputw3181_4067 Shewanella sp. W3-18-1 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_965423.1 4673290 R 351745 CDS YP_965424.1 120600850 4661116 complement(4676438..4677595) 1 NC_008750.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSp0313 probable multidrug efflux system protein; RND family efflux transporter MFP subunit 4677595 4661116 Sputw3181_4068 Shewanella sp. W3-18-1 RND family efflux transporter MFP subunit YP_965424.1 4676438 R 351745 CDS YP_965425.1 120600851 4661111 4677761..4678489 1 NC_008750.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RS05454 probable two component response regulator transcription regulator protein; two component transcriptional regulator 4678489 4661111 Sputw3181_4069 Shewanella sp. W3-18-1 two component transcriptional regulator YP_965425.1 4677761 D 351745 CDS YP_965426.1 120600852 4661107 4678486..4679580 1 NC_008750.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rru:Rru_A2930 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4679580 4661107 Sputw3181_4070 Shewanella sp. W3-18-1 integral membrane sensor signal transduction histidine kinase YP_965426.1 4678486 D 351745 CDS YP_965427.1 120600853 4661074 4679924..4680145 1 NC_008750.1 KEGG: sdn:Sden_3021 integrase, catalytic region; hypothetical protein 4680145 4661074 Sputw3181_4071 Shewanella sp. W3-18-1 hypothetical protein YP_965427.1 4679924 D 351745 CDS YP_965428.1 120600854 4661867 complement(4680660..4681289) 1 NC_008750.1 hypothetical protein 4681289 4661867 Sputw3181_4072 Shewanella sp. W3-18-1 hypothetical protein YP_965428.1 4680660 R 351745 CDS YP_965429.1 120600855 4661792 4681496..4682083 1 NC_008750.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: rha:RHA1_ro03159 resolvase; resolvase domain-containing protein 4682083 4661792 Sputw3181_4073 Shewanella sp. W3-18-1 resolvase domain-containing protein YP_965429.1 4681496 D 351745 CDS YP_965430.1 120600856 4661786 4682080..4683909 1 NC_008750.1 PFAM: Eco57I restriction endonuclease; KEGG: ssn:SSO_1583 putative methylase; Eco57I restriction endonuclease 4683909 4661786 Sputw3181_4074 Shewanella sp. W3-18-1 Eco57I restriction endonuclease YP_965430.1 4682080 D 351745 CDS YP_965431.1 120600857 4661781 4683899..4684945 1 NC_008750.1 PFAM: BsuBIPstI restriction endonuclease domain protein; KEGG: ssn:SSO_1584 putative restriction endonuclease; BsuBIPstI restriction endonuclease domain-containing protein 4684945 4661781 Sputw3181_4075 Shewanella sp. W3-18-1 BsuBIPstI restriction endonuclease domain-containing protein YP_965431.1 4683899 D 351745 CDS YP_965432.1 120600858 4661767 complement(4685009..4685653) 1 NC_008750.1 KEGG: plu:plu0130 hypothetical protein; hypothetical protein 4685653 4661767 Sputw3181_4076 Shewanella sp. W3-18-1 hypothetical protein YP_965432.1 4685009 R 351745 CDS YP_965433.1 120600859 4661741 complement(4686063..4686524) 1 NC_008750.1 hypothetical protein 4686524 4661741 Sputw3181_4077 Shewanella sp. W3-18-1 hypothetical protein YP_965433.1 4686063 R 351745 CDS YP_965434.1 120600860 4661735 4686617..4687582 1 NC_008750.1 PFAM: phage integrase family protein; KEGG: tcx:Tcr_0833 hypothetical protein; phage integrase family protein 4687582 4661735 Sputw3181_4078 Shewanella sp. W3-18-1 phage integrase family protein YP_965434.1 4686617 D 351745 CDS YP_965435.1 120600861 4661713 4688826..4689095 1 NC_008750.1 hypothetical protein 4689095 4661713 Sputw3181_4079 Shewanella sp. W3-18-1 hypothetical protein YP_965435.1 4688826 D 351745 CDS YP_965436.1 120600862 4661688 complement(4689510..4689905) 1 NC_008750.1 KEGG: ana:alr8557 hypothetical protein; hypothetical protein 4689905 4661688 Sputw3181_4080 Shewanella sp. W3-18-1 hypothetical protein YP_965436.1 4689510 R 351745 CDS YP_965437.1 120600863 4661669 complement(4689902..4690759) 1 NC_008750.1 hypothetical protein 4690759 4661669 Sputw3181_4081 Shewanella sp. W3-18-1 hypothetical protein YP_965437.1 4689902 R 351745 CDS YP_965438.1 120600864 4661626 4690987..4692411 1 NC_008750.1 PFAM: TraH family protein; KEGG: eci:UTI89_P132 putative ATP-binding F pilus assembly protein; TraH family protein 4692411 4661626 Sputw3181_4082 Shewanella sp. W3-18-1 TraH family protein YP_965438.1 4690987 D 351745 CDS YP_965439.1 120600865 4661604 4692415..4695819 1 NC_008750.1 PFAM: TraG domain protein; KEGG: eba:p1B148 sex pilus assembly; TraG domain-containing protein 4695819 4661604 Sputw3181_4083 Shewanella sp. W3-18-1 TraG domain-containing protein YP_965439.1 4692415 D 351745 CDS YP_965440.1 120600866 4661590 4696779..4697390 1 NC_008750.1 hypothetical protein 4697390 4661590 Sputw3181_4084 Shewanella sp. W3-18-1 hypothetical protein YP_965440.1 4696779 D 351745 CDS YP_965441.1 120600867 4661565 4697393..4697926 1 NC_008750.1 hypothetical protein 4697926 4661565 Sputw3181_4085 Shewanella sp. W3-18-1 hypothetical protein YP_965441.1 4697393 D 351745 CDS YP_965442.1 120600868 4661527 4698023..4700782 1 NC_008750.1 TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN 4700782 4661527 Sputw3181_4086 Shewanella sp. W3-18-1 conjugal transfer mating pair stabilization protein TraN YP_965442.1 4698023 D 351745 CDS YP_965443.1 120600869 4661108 4700932..4701168 1 NC_008750.1 hypothetical protein 4701168 4661108 Sputw3181_4087 Shewanella sp. W3-18-1 hypothetical protein YP_965443.1 4700932 D 351745 CDS YP_965444.1 120600870 4661444 4701155..4702114 1 NC_008750.1 PFAM: plasmid encoded RepA protein; KEGG: xac:XACb0056 replication protein A; plasmid encoded RepA protein 4702114 4661444 Sputw3181_4088 Shewanella sp. W3-18-1 plasmid encoded RepA protein YP_965444.1 4701155 D 351745 CDS YP_965445.1 120600871 4661397 4702472..4702840 1 NC_008750.1 TIGRFAM: DNA binding domain, excisionase family; putative transcriptional regulator 4702840 4661397 Sputw3181_4089 Shewanella sp. W3-18-1 putative transcriptional regulator YP_965445.1 4702472 D 351745 CDS YP_965446.1 120600872 4661413 complement(4702837..4704054) 1 NC_008750.1 PFAM: phage integrase family protein; KEGG: pgi:PG0874 mobilizable transposon, int protein; phage integrase family protein 4704054 4661413 Sputw3181_4090 Shewanella sp. W3-18-1 phage integrase family protein YP_965446.1 4702837 R 351745 CDS YP_965447.1 120600873 4661408 complement(4704258..4705619) 1 NC_008750.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4705619 trmE 4661408 trmE Shewanella sp. W3-18-1 tRNA modification GTPase TrmE YP_965447.1 4704258 R 351745 CDS YP_965448.1 120600874 4661360 complement(4705727..4707352) 1 NC_008750.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: shm:Shewmr7_4032 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein 4707352 4661360 Sputw3181_4092 Shewanella sp. W3-18-1 60 kDa inner membrane insertion protein YP_965448.1 4705727 R 351745 CDS YP_965449.1 120600875 4661350 complement(4707356..4707610) 1 NC_008750.1 PFAM: protein of unknown function DUF37; KEGG: son:SO0005 conserved hypothetical protein TIGR00278; hypothetical protein 4707610 4661350 Sputw3181_4093 Shewanella sp. W3-18-1 hypothetical protein YP_965449.1 4707356 R 351745 CDS YP_965450.1 120600876 4661348 complement(4707577..4707933) 1 NC_008750.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4707933 rnpA 4661348 rnpA Shewanella sp. W3-18-1 ribonuclease P YP_965450.1 4707577 R 351745 CDS YP_965451.1 120600877 4661327 complement(4707949..4708086) 1 NC_008750.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4708086 rpmH 4661327 rpmH Shewanella sp. W3-18-1 50S ribosomal protein L34 YP_965451.1 4707949 R 351745 CDS