-- dump date 20140620_064659 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 351745000001 SEQ_END SEQ_END NC_008750.1 4708380 4708380 DR NC_008750.1; contig end 4708380..4708380 Shewanella sp. W3-18-1 YP_961408.1 CDS dnaA NC_008750.1 150 1535 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 150..1535 Shewanella sp. W3-18-1 4661866 YP_961409.1 CDS Sputw3181_0002 NC_008750.1 1556 2656 D KEGG: shm:Shewmr7_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 1556..2656 Shewanella sp. W3-18-1 4658220 YP_961410.1 CDS recF NC_008750.1 2853 3935 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 2853..3935 Shewanella sp. W3-18-1 4658265 YP_961411.1 CDS Sputw3181_0004 NC_008750.1 3952 6369 D KEGG: son:SO0011 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 3952..6369 Shewanella sp. W3-18-1 4658305 YP_961412.1 CDS Sputw3181_0005 NC_008750.1 6571 7617 D PFAM: HDOD; KEGG: shm:Shewmr7_0007 putative signal transduction protein; putative signal transduction protein 6571..7617 Shewanella sp. W3-18-1 4658328 YP_961413.1 CDS glyS NC_008750.1 7705 9774 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(7705..9774) Shewanella sp. W3-18-1 4658458 YP_961414.1 CDS glyQ NC_008750.1 9785 10690 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(9785..10690) Shewanella sp. W3-18-1 4658902 YP_961415.1 CDS Sputw3181_0008 NC_008750.1 10808 11410 D KEGG: shm:Shewmr7_0010 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 10808..11410 Shewanella sp. W3-18-1 4658958 YP_961416.1 CDS Sputw3181_0009 NC_008750.1 11528 14716 R PFAM: peptidase S9B, dipeptidylpeptidase IV domain protein; amidohydrolase; WD40 domain protein beta Propeller; KEGG: she:Shewmr4_0011 amidohydrolase; amidohydrolase complement(11528..14716) Shewanella sp. W3-18-1 4659201 YP_961417.1 CDS Sputw3181_0010 NC_008750.1 14938 15390 R KEGG: she:Shewmr4_0012 hypothetical protein; hypothetical protein complement(14938..15390) Shewanella sp. W3-18-1 4659470 YP_961418.1 CDS Sputw3181_0011 NC_008750.1 15435 15680 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA complement(15435..15680) Shewanella sp. W3-18-1 4659529 YP_961419.1 CDS fadA NC_008750.1 15911 17074 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(15911..17074) Shewanella sp. W3-18-1 4659619 YP_961420.1 CDS fadB NC_008750.1 17097 19247 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(17097..19247) Shewanella sp. W3-18-1 4659680 YP_961421.1 CDS Sputw3181_0014 NC_008750.1 19738 21060 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 19738..21060 Shewanella sp. W3-18-1 4659656 YP_961422.1 CDS Sputw3181_0015 NC_008750.1 21088 21702 D PFAM: protein of unknown function UPF0029; KEGG: shm:Shewmr7_0018 protein of unknown function UPF0029; hypothetical protein 21088..21702 Shewanella sp. W3-18-1 4660140 YP_961423.1 CDS Sputw3181_0016 NC_008750.1 21780 23237 D TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: she:Shewmr4_0021 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 21780..23237 Shewanella sp. W3-18-1 4660168 YP_961424.1 CDS Sputw3181_0017 NC_008750.1 23240 23764 D KEGG: shm:Shewmr7_0020 protoporphyrinogen oxidase; protoporphyrinogen oxidase 23240..23764 Shewanella sp. W3-18-1 4660200 YP_961425.1 CDS Sputw3181_0018 NC_008750.1 23815 24123 R PFAM: regulatory protein, ArsR; KEGG: shm:Shewmr7_0021 transcriptional regulator, ArsR family; regulatory protein ArsR complement(23815..24123) Shewanella sp. W3-18-1 4660627 YP_961426.1 CDS Sputw3181_0019 NC_008750.1 24326 24880 D KEGG: she:Shewmr4_0024 protoporphyrinogen oxidase; protoporphyrinogen oxidase 24326..24880 Shewanella sp. W3-18-1 4660787 YP_961427.1 CDS Sputw3181_0020 NC_008750.1 24920 26362 R TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: she:Shewmr4_0025 potassium uptake protein, TrkH family; TrkH family potassium uptake protein complement(24920..26362) Shewanella sp. W3-18-1 4660838 YP_961428.1 CDS trkA NC_008750.1 26383 27792 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(26383..27792) Shewanella sp. W3-18-1 4660419 YP_961429.1 CDS Sputw3181_0022 NC_008750.1 27808 29097 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: she:Shewmr4_0027 sun protein; sun protein complement(27808..29097) Shewanella sp. W3-18-1 4660947 YP_961430.1 CDS Sputw3181_0023 NC_008750.1 29100 30056 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: shm:Shewmr7_0026 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(29100..30056) Shewanella sp. W3-18-1 4661562 YP_961431.1 CDS def NC_008750.1 30066 30578 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(30066..30578) Shewanella sp. W3-18-1 4660759 YP_961432.1 CDS Sputw3181_0025 NC_008750.1 30704 31828 D PFAM: Peptidoglycan-binding LysM; KEGG: shm:Shewmr7_0028 peptidoglycan-binding LysM; peptidoglycan-binding LysM 30704..31828 Shewanella sp. W3-18-1 4660653 YP_961433.1 CDS Sputw3181_0026 NC_008750.1 31907 32929 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: she:Shewmr4_0031 DNA protecting protein DprA; DNA protecting protein DprA 31907..32929 Shewanella sp. W3-18-1 4660376 YP_961434.1 CDS Sputw3181_0027 NC_008750.1 32932 33405 D PFAM: protein of unknown function DUF494; KEGG: son:SO0035 Smg protein; hypothetical protein 32932..33405 Shewanella sp. W3-18-1 4660360 YP_961435.1 CDS Sputw3181_0028 NC_008750.1 33519 34088 D PFAM: DNA topoisomerase, type IA, zn finger domain protein; KEGG: shm:Shewmr7_0031 DNA topoisomerase, type IA, zn finger domain protein; DNA topoisomerase type IA Zn finger domain-containing protein 33519..34088 Shewanella sp. W3-18-1 4660332 YP_961436.1 CDS Sputw3181_0029 NC_008750.1 34236 34802 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: son:SO0037 Sua5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 34236..34802 Shewanella sp. W3-18-1 4660083 YP_961437.1 CDS Sputw3181_0030 NC_008750.1 34828 35736 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 34828..35736 Shewanella sp. W3-18-1 4659988 YP_961438.1 CDS Sputw3181_0031 NC_008750.1 35771 36208 R PFAM: globin; KEGG: son:SO0039 hypothetical globin; globin complement(35771..36208) Shewanella sp. W3-18-1 4659788 YP_961439.1 CDS aroE NC_008750.1 36350 37198 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 36350..37198 Shewanella sp. W3-18-1 4659779 YP_961440.1 CDS Sputw3181_0033 NC_008750.1 37204 37479 D PFAM: protein of unknown function DUF1488; KEGG: shm:Shewmr7_0036 protein of unknown function DUF1488; hypothetical protein 37204..37479 Shewanella sp. W3-18-1 4659386 YP_961441.1 CDS Sputw3181_0034 NC_008750.1 37613 38161 R KEGG: shm:Shewmr7_0037 carbonic anhydrase, family 3; carbonic anhydrase complement(37613..38161) Shewanella sp. W3-18-1 4659119 YP_961442.1 CDS Sputw3181_0035 NC_008750.1 44067 46517 D KEGG: shm:Shewmr7_4007 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 44067..46517 Shewanella sp. W3-18-1 4661274 YP_961443.1 CDS Sputw3181_0036 NC_008750.1 46474 47457 R PFAM: alpha/beta hydrolase fold; KEGG: she:Shewmr4_3914 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein complement(46474..47457) Shewanella sp. W3-18-1 4658589 YP_961444.1 CDS Sputw3181_0037 NC_008750.1 47553 49364 R PFAM: protein of unknown function DUF885; KEGG: shm:Shewmr7_4005 protein of unknown function DUF885; hypothetical protein complement(47553..49364) Shewanella sp. W3-18-1 4658615 YP_961445.1 CDS Sputw3181_0038 NC_008750.1 49575 50570 D catalyzes the formation of inosine from adenosine; adenosine deaminase 49575..50570 Shewanella sp. W3-18-1 4658794 YP_961446.1 CDS Sputw3181_0039 NC_008750.1 50667 52007 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(50667..52007) Shewanella sp. W3-18-1 4658564 YP_961447.1 CDS Sputw3181_0040 NC_008750.1 52292 52759 R KEGG: shm:Shewmr7_4002 hypothetical protein; hypothetical protein complement(52292..52759) Shewanella sp. W3-18-1 4658569 YP_961448.1 CDS Sputw3181_0041 NC_008750.1 52829 53380 R PFAM: protein of unknown function DUF414; KEGG: son:SO4728 hypothetical protein; hypothetical protein complement(52829..53380) Shewanella sp. W3-18-1 4658704 YP_961449.1 CDS Sputw3181_0042 NC_008750.1 53471 54109 R KEGG: son:SO4727 hypothetical protein; hypothetical protein complement(53471..54109) Shewanella sp. W3-18-1 4658137 YP_961450.1 CDS Sputw3181_0043 NC_008750.1 54928 55551 R PFAM: cytochrome c, class I; KEGG: son:SO4666 cytochrome c; cytochrome c, class I complement(54928..55551) Shewanella sp. W3-18-1 4657707 YP_961451.1 CDS engB NC_008750.1 55721 56380 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 55721..56380 Shewanella sp. W3-18-1 4657828 YP_961452.1 CDS Sputw3181_0045 NC_008750.1 57192 59960 R KEGG: shm:Shewmr7_3997 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I complement(57192..59960) Shewanella sp. W3-18-1 4657782 YP_961453.1 CDS Sputw3181_0046 NC_008750.1 60347 61009 D PFAM: ThiJ/PfpI domain protein; KEGG: son:SO4670 enhancing lycopene biosynthesis protein; isoprenoid biosynthesis protein with amidotransferase-like domain 60347..61009 Shewanella sp. W3-18-1 4658359 YP_961454.1 CDS Sputw3181_0047 NC_008750.1 61096 61941 R PFAM: Rhomboid family protein; KEGG: shm:Shewmr7_3995 rhomboid family protein; rhomboid family protein complement(61096..61941) Shewanella sp. W3-18-1 4658370 YP_961455.1 CDS Sputw3181_0048 NC_008750.1 61938 62243 R PFAM: Rhodanese domain protein; KEGG: shm:Shewmr7_3994 rhodanese domain protein; rhodanese domain-containing protein complement(61938..62243) Shewanella sp. W3-18-1 4658333 YP_961456.1 CDS tdh NC_008750.1 62354 63379 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase complement(62354..63379) Shewanella sp. W3-18-1 4657836 YP_961457.1 CDS Sputw3181_0050 NC_008750.1 63391 64584 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase complement(63391..64584) Shewanella sp. W3-18-1 4657838 YP_961458.1 CDS Sputw3181_0051 NC_008750.1 64872 65519 R PFAM: regulatory protein, TetR; KEGG: son:SO4675 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(64872..65519) Shewanella sp. W3-18-1 4657923 YP_961459.1 CDS Sputw3181_0052 NC_008750.1 65662 66927 D PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: she:Shewmr4_3898 three-deoxy-D-manno-octulosonic-acid transferase domain protein; 3-deoxy-D-manno-octulosonic-acid transferase 65662..66927 Shewanella sp. W3-18-1 4658011 YP_961460.1 CDS Sputw3181_0053 NC_008750.1 66978 67730 R catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase complement(66978..67730) Shewanella sp. W3-18-1 4658069 YP_961461.1 CDS Sputw3181_0054 NC_008750.1 67829 68872 D PFAM: glycosyl transferase, family 9; KEGG: son:SO4678 heptosyl transferase, glycosyltransferase family 9 protein; glycosyl transferase family protein 67829..68872 Shewanella sp. W3-18-1 4658161 YP_961462.1 CDS Sputw3181_0055 NC_008750.1 68961 70046 D PFAM: glycosyl transferase, group 1; KEGG: son:SO4679 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 68961..70046 Shewanella sp. W3-18-1 4658191 YP_961463.1 CDS Sputw3181_0056 NC_008750.1 70077 71156 D PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: son:SO4680 hypothetical protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 70077..71156 Shewanella sp. W3-18-1 4658206 YP_961464.1 CDS Sputw3181_0057 NC_008750.1 71321 72280 D PFAM: glycosyl transferase, family 2; KEGG: bfs:BF0187 putative glycosyltransferase; glycosyl transferase family protein 71321..72280 Shewanella sp. W3-18-1 4658256 YP_961465.1 CDS Sputw3181_0058 NC_008750.1 72561 73634 R PFAM: glycosyl transferase, group 1; KEGG: she:Shewmr4_3889 glycosyl transferase, group 1; group 1 glycosyl transferase complement(72561..73634) Shewanella sp. W3-18-1 4658266 YP_961466.1 CDS Sputw3181_0059 NC_008750.1 74334 76175 R PFAM: sulfatase; KEGG: vvy:VV0298 predicted hydrolase; sulfatase complement(74334..76175) Shewanella sp. W3-18-1 4658272 YP_961467.1 CDS coaD NC_008750.1 76556 77047 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 76556..77047 Shewanella sp. W3-18-1 4658308 YP_961468.1 CDS Sputw3181_0061 NC_008750.1 77138 78613 D KEGG: shm:Shewmr7_3982 hypothetical protein; hypothetical protein 77138..78613 Shewanella sp. W3-18-1 4658318 YP_961469.1 CDS Sputw3181_0062 NC_008750.1 78679 79686 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: shm:Shewmr7_3979 UDP-glucuronate 5'-epimerase; NAD-dependent epimerase/dehydratase complement(78679..79686) Shewanella sp. W3-18-1 4658321 YP_961470.1 CDS Sputw3181_0063 NC_008750.1 79710 80873 R PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: son:SO4687 UDP-glucose 6-dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase complement(79710..80873) Shewanella sp. W3-18-1 4658326 YP_961471.1 CDS Sputw3181_0064 NC_008750.1 81108 81839 D PFAM: glycosyl transferase, family 2; KEGG: she:Shewmr4_3884 glycosyl transferase, family 2; glycosyl transferase family protein 81108..81839 Shewanella sp. W3-18-1 4658329 YP_961472.1 CDS Sputw3181_0065 NC_008750.1 81841 82506 D KEGG: shm:Shewmr7_3976 hypothetical protein; hypothetical protein 81841..82506 Shewanella sp. W3-18-1 4658335 YP_961473.1 CDS Sputw3181_0066 NC_008750.1 82516 84240 D PFAM: glycosyl transferase, family 39; KEGG: shm:Shewmr7_3975 glycosyl transferase, family 39; glycosyl transferase family protein 82516..84240 Shewanella sp. W3-18-1 4658430 YP_961474.1 CDS Sputw3181_0067 NC_008750.1 84303 85118 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(84303..85118) Shewanella sp. W3-18-1 4658358 YP_961475.1 CDS Sputw3181_0068 NC_008750.1 85154 85609 R KEGG: son:SO4725 hypothetical protein; hypothetical protein complement(85154..85609) Shewanella sp. W3-18-1 4661203 YP_961476.1 CDS Sputw3181_0069 NC_008750.1 85700 86683 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(85700..86683) Shewanella sp. W3-18-1 4659040 YP_961477.1 CDS Sputw3181_0070 NC_008750.1 86700 88511 R TIGRFAM: molybdenum cofactor synthesis domain; molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin binding domain; molybdopterin-guanine dinucleotide biosynthesis MobB region; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: she:Shewmr4_3878 molybdopterin-guanine dinucleotide biosynthesis protein B; putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA complement(86700..88511) Shewanella sp. W3-18-1 4658994 YP_961478.1 CDS Sputw3181_0071 NC_008750.1 88548 89138 R TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: son:SO4722 molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(88548..89138) Shewanella sp. W3-18-1 4658630 YP_961479.1 CDS Sputw3181_0072 NC_008750.1 89122 89832 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3969 ABC transporter related; ABC transporter-like protein complement(89122..89832) Shewanella sp. W3-18-1 4658373 YP_961480.1 CDS Sputw3181_0073 NC_008750.1 89836 90543 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_3968 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(89836..90543) Shewanella sp. W3-18-1 4658720 YP_961481.1 CDS Sputw3181_0074 NC_008750.1 90540 91364 R PFAM: extracellular solute-binding protein, family 1; KEGG: she:Shewmr4_3874 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(90540..91364) Shewanella sp. W3-18-1 4658847 YP_961482.1 CDS Sputw3181_0075 NC_008750.1 91602 93032 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_3966 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator 91602..93032 Shewanella sp. W3-18-1 4658619 YP_961483.1 CDS Sputw3181_0076 NC_008750.1 93034 95157 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_3965 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 93034..95157 Shewanella sp. W3-18-1 4658926 YP_961484.1 CDS Sputw3181_0077 NC_008750.1 95384 95842 R KEGG: she:Shewmr4_3871 acetyltransferase, GNAT family; acetyltransferase complement(95384..95842) Shewanella sp. W3-18-1 4658936 YP_961485.1 CDS Sputw3181_0078 NC_008750.1 95942 96601 R TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: son:SO4715 hypothetical protein; hypothetical protein complement(95942..96601) Shewanella sp. W3-18-1 4658951 YP_961486.1 CDS Sputw3181_0079 NC_008750.1 96843 97577 D KEGG: she:Shewmr4_3869 hypothetical protein; hypothetical protein 96843..97577 Shewanella sp. W3-18-1 4658989 YP_961487.1 CDS Sputw3181_0080 NC_008750.1 97611 98969 R TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: she:Shewmr4_3868 isochorismate synthases; isochorismate synthase complement(97611..98969) Shewanella sp. W3-18-1 4658998 YP_961488.1 CDS Sputw3181_0081 NC_008750.1 99594 100940 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_3866 ABC transporter related; ABC transporter-like protein 99594..100940 Shewanella sp. W3-18-1 4658995 YP_961489.1 CDS Sputw3181_0082 NC_008750.1 101205 102395 D PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO4711 HD domain protein; metal dependent phosphohydrolase 101205..102395 Shewanella sp. W3-18-1 4659014 YP_961490.1 CDS Sputw3181_0083 NC_008750.1 102500 103123 D PFAM: Paraquat-inducible protein A; KEGG: shm:Shewmr7_3953 paraquat-inducible protein A; paraquat-inducible protein A 102500..103123 Shewanella sp. W3-18-1 4659155 YP_961491.1 CDS Sputw3181_0084 NC_008750.1 103372 103518 D KEGG: shm:Shewmr7_3947 hypothetical protein; hypothetical protein 103372..103518 Shewanella sp. W3-18-1 4659160 YP_961492.1 CDS Sputw3181_0085 NC_008750.1 103539 104489 R PFAM: conserved hypothetical protein 698; KEGG: shm:Shewmr7_3946 conserved hypothetical protein 698; hypothetical protein complement(103539..104489) Shewanella sp. W3-18-1 4659180 YP_961493.1 CDS Sputw3181_0086 NC_008750.1 104777 105340 R Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase complement(104777..105340) Shewanella sp. W3-18-1 4659028 YP_961494.1 CDS Sputw3181_0087 NC_008750.1 105594 107123 D PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_3944 transcriptional regulator, XRE family; XRE family transcriptional regulator 105594..107123 Shewanella sp. W3-18-1 4659337 YP_961495.1 CDS Sputw3181_0088 NC_008750.1 107492 108394 D PFAM: homocysteine S-methyltransferase; KEGG: ppu:PP_0658 homocysteine S-methyltransferase family protein; homocysteine S-methyltransferase 107492..108394 Shewanella sp. W3-18-1 4659374 YP_961496.1 CDS Sputw3181_0089 NC_008750.1 108404 109801 D PFAM: amino acid permease-associated region; KEGG: pmu:PM0162 arginine/ornithine antiporter, putative; amino acid permease-associated protein 108404..109801 Shewanella sp. W3-18-1 4659487 YP_961497.1 CDS Sputw3181_0090 NC_008750.1 110012 112213 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_0950 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 110012..112213 Shewanella sp. W3-18-1 4659518 YP_961498.1 CDS Sputw3181_0091 NC_008750.1 112352 113299 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(112352..113299) Shewanella sp. W3-18-1 4659520 YP_961499.1 CDS Sputw3181_0092 NC_008750.1 113313 113654 R PFAM: cytochrome C oxidase subunit IV; KEGG: shm:Shewmr7_3917 cytochrome c oxidase subunit IV; cytochrome C oxidase subunit IV complement(113313..113654) Shewanella sp. W3-18-1 4659521 YP_961500.1 CDS Sputw3181_0093 NC_008750.1 113654 114274 R PFAM: cytochrome c oxidase, subunit III; KEGG: she:Shewmr4_3825 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III complement(113654..114274) Shewanella sp. W3-18-1 4659629 YP_961501.1 CDS Sputw3181_0094 NC_008750.1 114276 116255 R PFAM: cytochrome c oxidase, subunit I; KEGG: shm:Shewmr7_3915 cytochrome-c oxidase; cytochrome-c oxidase complement(114276..116255) Shewanella sp. W3-18-1 4659569 YP_961502.1 CDS Sputw3181_0095 NC_008750.1 116258 117334 R TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; KEGG: she:Shewmr4_3823 ubiquinol oxidase, subunit II; ubiquinol oxidase subunit II complement(116258..117334) Shewanella sp. W3-18-1 4659602 YP_961503.1 CDS Sputw3181_0096 NC_008750.1 117524 117913 R KEGG: she:Shewmr4_3822 hypothetical protein; hypothetical protein complement(117524..117913) Shewanella sp. W3-18-1 4659605 YP_961504.1 CDS Sputw3181_0097 NC_008750.1 118314 121964 D KEGG: shm:Shewmr7_3912 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase 118314..121964 Shewanella sp. W3-18-1 4659594 YP_961505.1 CDS Sputw3181_0098 NC_008750.1 122043 122519 D KEGG: son:SO4656 hypothetical protein; hypothetical protein 122043..122519 Shewanella sp. W3-18-1 4659610 YP_961506.1 CDS Sputw3181_0099 NC_008750.1 122585 124057 R KEGG: shm:Shewmr7_3910 hypothetical protein; hypothetical protein complement(122585..124057) Shewanella sp. W3-18-1 4659811 YP_961507.1 CDS Sputw3181_0100 NC_008750.1 124197 125561 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO4648 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(124197..125561) Shewanella sp. W3-18-1 4659600 YP_961508.1 CDS Sputw3181_0101 NC_008750.1 125554 126249 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4647 DNA-binding response regulator; two component transcriptional regulator complement(125554..126249) Shewanella sp. W3-18-1 4659846 YP_961509.1 CDS Sputw3181_0102 NC_008750.1 126252 126554 R PFAM: Propeptide, PepSY amd peptidase M4; KEGG: shm:Shewmr7_3907 propeptide, PepSY amd peptidase M4; peptidase complement(126252..126554) Shewanella sp. W3-18-1 4660188 YP_961510.1 CDS Sputw3181_0103 NC_008750.1 126959 127903 D KEGG: shm:Shewmr7_3906 hypothetical protein; hypothetical protein 126959..127903 Shewanella sp. W3-18-1 4660187 YP_961511.1 CDS Sputw3181_0104 NC_008750.1 127985 128458 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_3905 redoxin domain protein; redoxin domain-containing protein 127985..128458 Shewanella sp. W3-18-1 4659607 YP_961512.1 CDS Sputw3181_0105 NC_008750.1 128539 130521 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3904 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(128539..130521) Shewanella sp. W3-18-1 4659963 YP_961513.1 CDS envZ NC_008750.1 130650 131966 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein complement(130650..131966) Shewanella sp. W3-18-1 4659995 YP_961514.1 CDS ompR NC_008750.1 132009 132734 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(132009..132734) Shewanella sp. W3-18-1 4660021 YP_961515.1 CDS Sputw3181_0108 NC_008750.1 133111 133614 D TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: she:Shewmr4_3810 transcription elongation factor GreB; transcription elongation factor GreB 133111..133614 Shewanella sp. W3-18-1 4660107 YP_961516.1 CDS Sputw3181_0109 NC_008750.1 133702 136143 D PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: son:SO4629 hypothetical protein; RNA-binding S1 domain-containing protein 133702..136143 Shewanella sp. W3-18-1 4660127 YP_961517.1 CDS Sputw3181_0110 NC_008750.1 136360 138324 D PFAM: sulfatase; KEGG: shm:Shewmr7_3884 sulfatase; sulfatase 136360..138324 Shewanella sp. W3-18-1 4660133 YP_961518.1 CDS Sputw3181_0111 NC_008750.1 138388 138945 R KEGG: she:Shewmr4_3807 hypothetical protein; hypothetical protein complement(138388..138945) Shewanella sp. W3-18-1 4660165 YP_961519.1 CDS Sputw3181_0112 NC_008750.1 139007 139729 R TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: shm:Shewmr7_3882 BioH protein; bioH protein complement(139007..139729) Shewanella sp. W3-18-1 4659845 YP_961520.1 CDS Sputw3181_0113 NC_008750.1 139833 140621 D KEGG: son:SO4625 competence protein ComF; competence protein ComF 139833..140621 Shewanella sp. W3-18-1 4660171 YP_961521.1 CDS Sputw3181_0114 NC_008750.1 140789 141535 D PFAM: regulatory protein, LuxR; KEGG: son:SO4624 transcriptional regulator, LuxR family; response regulator receiver protein 140789..141535 Shewanella sp. W3-18-1 4660976 YP_961522.1 CDS Sputw3181_0115 NC_008750.1 141538 142215 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4623 DNA-binding response regulator; two component transcriptional regulator 141538..142215 Shewanella sp. W3-18-1 4660438 YP_961523.1 CDS Sputw3181_0116 NC_008750.1 142202 143443 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4622 sensor histidine kinase; ATPase domain-containing protein 142202..143443 Shewanella sp. W3-18-1 4660448 YP_961524.1 CDS Sputw3181_0117 NC_008750.1 143623 144387 D KEGG: son:SO4621 hypothetical protein; hypothetical protein 143623..144387 Shewanella sp. W3-18-1 4660204 YP_961525.1 CDS Sputw3181_0118 NC_008750.1 144480 146228 D TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO4620 fumarate reductase, flavoprotein subunit precursor; flavocytochrome c 144480..146228 Shewanella sp. W3-18-1 4659688 YP_961526.1 CDS Sputw3181_0119 NC_008750.1 146468 147046 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 146468..147046 Shewanella sp. W3-18-1 4660552 YP_961527.1 CDS Sputw3181_0120 NC_008750.1 147258 147464 R hypothetical protein complement(147258..147464) Shewanella sp. W3-18-1 4660705 YP_961528.1 CDS Sputw3181_0121 NC_008750.1 147821 148765 R KEGG: rpe:RPE_0798 hypothetical protein; hypothetical protein complement(147821..148765) Shewanella sp. W3-18-1 4660795 YP_961529.1 CDS Sputw3181_0122 NC_008750.1 148917 149477 R hypothetical protein complement(148917..149477) Shewanella sp. W3-18-1 4660831 YP_961530.1 CDS Sputw3181_0123 NC_008750.1 150192 151481 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO4617 DNA-damage-inducible protein F; MATE efflux family protein complement(150192..151481) Shewanella sp. W3-18-1 4660839 YP_961531.1 CDS Sputw3181_0124 NC_008750.1 151585 152631 D PFAM: polysaccharide deacetylase; KEGG: she:Shewmr4_3801 polysaccharide deacetylase; polysaccharide deacetylase 151585..152631 Shewanella sp. W3-18-1 4660870 YP_961532.1 CDS Sputw3181_0125 NC_008750.1 152632 153264 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: shm:Shewmr7_3873 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC complement(152632..153264) Shewanella sp. W3-18-1 4660883 YP_961533.1 CDS Sputw3181_0126 NC_008750.1 153269 154174 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(153269..154174) Shewanella sp. W3-18-1 4660889 YP_961534.1 CDS Sputw3181_0127 NC_008750.1 154189 155166 R PFAM: cytochrome oxidase assembly; KEGG: son:SO4613 cytochrome oxidase assembly protein, putative; cytochrome oxidase assembly complement(154189..155166) Shewanella sp. W3-18-1 4660932 YP_961535.1 CDS Sputw3181_0128 NC_008750.1 155166 155726 R KEGG: son:SO4612 hypothetical protein; hypothetical protein complement(155166..155726) Shewanella sp. W3-18-1 4660897 YP_961536.1 CDS Sputw3181_0129 NC_008750.1 155789 156598 R KEGG: she:Shewmr4_3796 hypothetical protein; hypothetical protein complement(155789..156598) Shewanella sp. W3-18-1 4660979 YP_961537.1 CDS Sputw3181_0130 NC_008750.1 156769 157644 R PFAM: cytochrome c oxidase, subunit III; KEGG: shm:Shewmr7_3867 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III complement(156769..157644) Shewanella sp. W3-18-1 4660913 YP_961538.1 CDS Sputw3181_0131 NC_008750.1 157641 158207 R involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein complement(157641..158207) Shewanella sp. W3-18-1 4660977 YP_961539.1 CDS Sputw3181_0132 NC_008750.1 158209 159801 R PFAM: cytochrome c oxidase, subunit I; KEGG: shm:Shewmr7_3865 cytochrome-c oxidase; cytochrome-c oxidase complement(158209..159801) Shewanella sp. W3-18-1 4661030 YP_961540.1 CDS Sputw3181_0133 NC_008750.1 159811 161349 R PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: she:Shewmr4_3791 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II complement(159811..161349) Shewanella sp. W3-18-1 4660978 YP_961541.1 CDS Sputw3181_0134 NC_008750.1 161745 162257 R KEGG: she:Shewmr4_3790 hypothetical protein; hypothetical protein complement(161745..162257) Shewanella sp. W3-18-1 4660955 YP_961542.1 CDS Sputw3181_0135 NC_008750.1 162254 162874 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(162254..162874) Shewanella sp. W3-18-1 4661180 YP_961543.1 CDS Sputw3181_0136 NC_008750.1 163225 165648 D PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 163225..165648 Shewanella sp. W3-18-1 4661804 YP_961544.1 CDS Sputw3181_0137 NC_008750.1 165648 166904 D TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: son:SO4601 tryptophan-specific transport protein; aromatic amino acid transporter 165648..166904 Shewanella sp. W3-18-1 4661755 YP_961545.1 CDS Sputw3181_0138 NC_008750.1 166995 168152 R PFAM: ribonuclease T2; KEGG: son:SO4599 ribonuclease, T2 family; ribonuclease T2 complement(166995..168152) Shewanella sp. W3-18-1 4661420 YP_961546.1 CDS murB NC_008750.1 168410 169435 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 168410..169435 Shewanella sp. W3-18-1 4661361 YP_961547.1 CDS Sputw3181_0140 NC_008750.1 169428 170387 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 169428..170387 Shewanella sp. W3-18-1 4661344 YP_961548.1 CDS Sputw3181_0141 NC_008750.1 170398 171348 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(170398..171348) Shewanella sp. W3-18-1 4661285 YP_961549.1 CDS Sputw3181_0142 NC_008750.1 172061 173245 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 172061..173245 Shewanella sp. W3-18-1 4660614 YP_961550.1 CDS secE NC_008750.1 173521 173892 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 173521..173892 Shewanella sp. W3-18-1 4660686 YP_961551.1 CDS Sputw3181_0144 NC_008750.1 173902 174453 D KEGG: shm:Shewmr7_0182 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; NusG antitermination factor 173902..174453 Shewanella sp. W3-18-1 4660382 YP_961552.1 CDS rplK NC_008750.1 174581 175009 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 174581..175009 Shewanella sp. W3-18-1 4660607 YP_961553.1 CDS rplA NC_008750.1 175014 175715 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 175014..175715 Shewanella sp. W3-18-1 4660604 YP_961554.1 CDS rplJ NC_008750.1 175982 176482 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 175982..176482 Shewanella sp. W3-18-1 4660367 YP_961555.1 CDS rplL NC_008750.1 176537 176905 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 176537..176905 Shewanella sp. W3-18-1 4660363 YP_961556.1 CDS rpoB NC_008750.1 177146 181177 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 177146..181177 Shewanella sp. W3-18-1 4660361 YP_961557.1 CDS Sputw3181_0150 NC_008750.1 181261 185478 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 181261..185478 Shewanella sp. W3-18-1 4660327 YP_961558.1 CDS rpsL NC_008750.1 185658 186032 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 185658..186032 Shewanella sp. W3-18-1 4660330 YP_961559.1 CDS Sputw3181_0152 NC_008750.1 186113 186583 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 186113..186583 Shewanella sp. W3-18-1 4660494 YP_961560.1 CDS Sputw3181_0153 NC_008750.1 186662 188758 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 186662..188758 Shewanella sp. W3-18-1 4660439 YP_961561.2 CDS Sputw3181_0154 NC_008750.1 188831 190015 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 188831..190015 Shewanella sp. W3-18-1 4660956 YP_961562.1 CDS rpsJ NC_008750.1 190350 190661 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 190350..190661 Shewanella sp. W3-18-1 4660046 YP_961563.1 CDS rplC NC_008750.1 190689 191327 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 190689..191327 Shewanella sp. W3-18-1 4660018 YP_961564.1 CDS rplD NC_008750.1 191345 191950 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 191345..191950 Shewanella sp. W3-18-1 4659991 YP_961565.1 CDS rplW NC_008750.1 191947 192252 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 191947..192252 Shewanella sp. W3-18-1 4659805 YP_961566.1 CDS rplB NC_008750.1 192269 193093 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 192269..193093 Shewanella sp. W3-18-1 4659941 YP_961567.1 CDS rpsS NC_008750.1 193108 193386 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 193108..193386 Shewanella sp. W3-18-1 4659790 YP_961568.1 CDS rplV NC_008750.1 193402 193734 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 193402..193734 Shewanella sp. W3-18-1 4661745 YP_961569.1 CDS rpsC NC_008750.1 193744 194436 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 193744..194436 Shewanella sp. W3-18-1 4659715 YP_961570.1 CDS rplP NC_008750.1 194448 194858 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 194448..194858 Shewanella sp. W3-18-1 4659689 YP_961571.1 CDS Sputw3181_0164 NC_008750.1 194858 195049 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 194858..195049 Shewanella sp. W3-18-1 4659763 YP_961572.1 CDS rpsQ NC_008750.1 195049 195297 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 195049..195297 Shewanella sp. W3-18-1 4659439 YP_961573.1 CDS rplN NC_008750.1 195476 195844 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 195476..195844 Shewanella sp. W3-18-1 4659436 YP_961574.1 CDS rplX NC_008750.1 195856 196170 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 195856..196170 Shewanella sp. W3-18-1 4659405 YP_961575.1 CDS rplE NC_008750.1 196183 196722 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 196183..196722 Shewanella sp. W3-18-1 4659125 YP_961576.1 CDS rpsN NC_008750.1 196733 197038 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 196733..197038 Shewanella sp. W3-18-1 4659120 YP_961577.1 CDS rpsH NC_008750.1 197063 197455 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 197063..197455 Shewanella sp. W3-18-1 4659331 YP_961578.1 CDS rplF NC_008750.1 197466 197999 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 197466..197999 Shewanella sp. W3-18-1 4659111 YP_961579.1 CDS rplR NC_008750.1 198010 198360 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 198010..198360 Shewanella sp. W3-18-1 4659110 YP_961580.1 CDS rpsE NC_008750.1 198373 198876 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 198373..198876 Shewanella sp. W3-18-1 4659107 YP_961581.1 CDS rpmD NC_008750.1 198883 199065 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 198883..199065 Shewanella sp. W3-18-1 4659254 YP_961582.1 CDS rplO NC_008750.1 199069 199503 D late assembly protein; 50S ribosomal protein L15 199069..199503 Shewanella sp. W3-18-1 4659227 YP_961583.1 CDS secY NC_008750.1 199511 200851 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 199511..200851 Shewanella sp. W3-18-1 4659062 YP_961584.1 CDS rpmJ NC_008750.1 200873 200986 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 200873..200986 Shewanella sp. W3-18-1 4661427 YP_961585.1 CDS rpsM NC_008750.1 201103 201459 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 201103..201459 Shewanella sp. W3-18-1 4661433 YP_961586.1 CDS Sputw3181_0179 NC_008750.1 201475 201867 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 201475..201867 Shewanella sp. W3-18-1 4658858 YP_961587.1 CDS rpsD NC_008750.1 201900 202520 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 201900..202520 Shewanella sp. W3-18-1 4658608 YP_961588.1 CDS Sputw3181_0181 NC_008750.1 202545 203534 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 202545..203534 Shewanella sp. W3-18-1 4658798 YP_961589.1 CDS rplQ NC_008750.1 203575 203970 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 203575..203970 Shewanella sp. W3-18-1 4658785 YP_961590.1 CDS Sputw3181_0184 NC_008750.1 204640 205128 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(204640..205128) Shewanella sp. W3-18-1 4660566 YP_961591.1 CDS Sputw3181_0185 NC_008750.1 205125 205325 R PFAM: Heme exporter protein D (CcmD); KEGG: shm:Shewmr7_0223 heme exporter protein D (CcmD); Heme exporter protein CcmD complement(205125..205325) Shewanella sp. W3-18-1 4658536 YP_961592.1 CDS Sputw3181_0186 NC_008750.1 205325 206071 R TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: son:SO0261 heme exporter protein CcmC; heme exporter protein CcmC complement(205325..206071) Shewanella sp. W3-18-1 4658700 YP_961593.1 CDS Sputw3181_0187 NC_008750.1 206073 206759 R TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: son:SO0262 heme exporter protein CcmB; heme exporter protein CcmB complement(206073..206759) Shewanella sp. W3-18-1 4658489 YP_961594.1 CDS Sputw3181_0188 NC_008750.1 206771 207421 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(206771..207421) Shewanella sp. W3-18-1 4658653 YP_961595.1 CDS Sputw3181_0189 NC_008750.1 207742 208041 D PFAM: cytochrome c, class I; KEGG: shm:Shewmr7_0227 cytochrome c, class I; cytochrome c, class I 207742..208041 Shewanella sp. W3-18-1 4658645 YP_961596.1 CDS Sputw3181_0190 NC_008750.1 208103 209350 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0265 cytochrome c-type biogenesis protein CcmH; hypothetical protein complement(208103..209350) Shewanella sp. W3-18-1 4658529 YP_961597.1 CDS Sputw3181_0191 NC_008750.1 209747 211726 D TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: shm:Shewmr7_0229 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 209747..211726 Shewanella sp. W3-18-1 4658138 YP_961598.1 CDS Sputw3181_0192 NC_008750.1 211738 212292 D TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: son:SO0267 thiol:disulfide interchange protein DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE 211738..212292 Shewanella sp. W3-18-1 4658136 YP_961599.1 CDS Sputw3181_0193 NC_008750.1 212289 212768 D PFAM: cytochrome C biogenesis protein; KEGG: son:SO0268 cytochrome c-type biogenesis protein CcmH; cytochrome C biogenesis protein 212289..212768 Shewanella sp. W3-18-1 4657719 YP_961600.1 CDS Sputw3181_0194 NC_008750.1 212765 213352 D PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_0232 redoxin domain protein; redoxin domain-containing protein 212765..213352 Shewanella sp. W3-18-1 4660973 YP_961601.1 CDS Sputw3181_0195 NC_008750.1 219543 220055 D KEGG: shm:Shewmr7_3783 hypothetical protein; hypothetical protein 219543..220055 Shewanella sp. W3-18-1 4660297 YP_961602.1 CDS Sputw3181_0196 NC_008750.1 220466 220675 D KEGG: son:SO4490 hypothetical protein; hypothetical protein 220466..220675 Shewanella sp. W3-18-1 4660939 YP_961603.1 CDS Sputw3181_0197 NC_008750.1 221141 222544 D TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; KEGG: bsu:BG12951 similar to 2-oxoglutarate/malate translocator; anion transporter 221141..222544 Shewanella sp. W3-18-1 4657675 YP_961604.1 CDS Sputw3181_0198 NC_008750.1 222612 224120 D TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: ppr:PBPRA2409 putative fumarate hydratase, class I; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 222612..224120 Shewanella sp. W3-18-1 4657673 YP_961605.1 CDS Sputw3181_0199 NC_008750.1 224204 224881 R PFAM: response regulator receiver; Helix-turn-helix, type 11 domain protein; KEGG: vpa:VP1711 response regulator; response regulator receiver complement(224204..224881) Shewanella sp. W3-18-1 4657813 YP_961606.1 CDS Sputw3181_0200 NC_008750.1 224871 226538 R PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: bld:BLi01245 hypothetical protein; signal transduction histidine kinase regulating citrate/malate metabolism complement(224871..226538) Shewanella sp. W3-18-1 4658380 YP_961607.1 CDS Sputw3181_0201 NC_008750.1 226722 227087 R in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D complement(226722..227087) Shewanella sp. W3-18-1 4658025 YP_961608.1 CDS Sputw3181_0202 NC_008750.1 227100 227483 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C complement(227100..227483) Shewanella sp. W3-18-1 4658201 YP_961609.1 CDS Sputw3181_0203 NC_008750.1 227485 228225 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit complement(227485..228225) Shewanella sp. W3-18-1 4658337 YP_961610.1 CDS Sputw3181_0204 NC_008750.1 228225 230000 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit complement(228225..230000) Shewanella sp. W3-18-1 4658976 YP_961611.1 CDS Sputw3181_0205 NC_008750.1 230316 230792 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO4489 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(230316..230792) Shewanella sp. W3-18-1 4658511 YP_961612.1 CDS Sputw3181_0206 NC_008750.1 230895 232211 R PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: son:SO4488 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(230895..232211) Shewanella sp. W3-18-1 4658722 YP_961613.1 CDS Sputw3181_0207 NC_008750.1 232216 232875 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3781 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(232216..232875) Shewanella sp. W3-18-1 4658797 YP_961614.1 CDS Sputw3181_0208 NC_008750.1 232875 233141 R PFAM: Propeptide, PepSY amd peptidase M4; KEGG: shm:Shewmr7_3780 propeptide, PepSY amd peptidase M4; peptidase complement(232875..233141) Shewanella sp. W3-18-1 4658592 YP_961615.1 CDS Sputw3181_0209 NC_008750.1 233134 233697 R KEGG: son:SO4485 diheme cytochrome c; diheme cytochrome c complement(233134..233697) Shewanella sp. W3-18-1 4659651 YP_961616.1 CDS Sputw3181_0210 NC_008750.1 233801 234247 R KEGG: shm:Shewmr7_3778 cytochrome c-type protein Shp; cytochrome c-type protein Shp complement(233801..234247) Shewanella sp. W3-18-1 4659219 YP_961617.1 CDS Sputw3181_0211 NC_008750.1 234301 234888 R PFAM: cytochrome B561; KEGG: son:SO4483 cytochrome b, putative; cytochrome B561 complement(234301..234888) Shewanella sp. W3-18-1 4659346 YP_961618.1 CDS Sputw3181_0212 NC_008750.1 235105 235569 D KEGG: she:Shewmr4_0245 hypothetical protein; hypothetical protein 235105..235569 Shewanella sp. W3-18-1 4659508 YP_961619.1 CDS Sputw3181_0213 NC_008750.1 235650 236153 D KEGG: son:SO4481 hypothetical protein; hypothetical protein 235650..236153 Shewanella sp. W3-18-1 4659598 YP_961620.1 CDS Sputw3181_0214 NC_008750.1 236319 237839 R PFAM: aldehyde dehydrogenase; KEGG: son:SO4480 aldehyde dehydrogenase; aldehyde dehydrogenase complement(236319..237839) Shewanella sp. W3-18-1 4660285 YP_961621.1 CDS Sputw3181_0215 NC_008750.1 238100 240001 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3771 GAF modulated sigma54 specific transcriptional regulator, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator 238100..240001 Shewanella sp. W3-18-1 4659774 YP_961622.1 CDS Sputw3181_0216 NC_008750.1 240044 241393 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4478 sensor protein CpxA; integral membrane sensor signal transduction histidine kinase complement(240044..241393) Shewanella sp. W3-18-1 4660015 YP_961623.1 CDS Sputw3181_0217 NC_008750.1 241408 242094 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4477 transcriptional regulatory protein CpxR; two component transcriptional regulator complement(241408..242094) Shewanella sp. W3-18-1 4660186 YP_961624.1 CDS Sputw3181_0218 NC_008750.1 242361 242852 D PFAM: protein of unknown function, Spy-related; KEGG: she:Shewmr4_0253 protein of unknown function, Spy-related; hypothetical protein 242361..242852 Shewanella sp. W3-18-1 4660987 YP_961625.1 CDS Sputw3181_0219 NC_008750.1 242903 243784 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: shm:Shewmr7_3767 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 242903..243784 Shewanella sp. W3-18-1 4660302 YP_961626.1 CDS Sputw3181_0220 NC_008750.1 243803 244264 D KEGG: she:Shewmr4_0255 hypothetical protein; hypothetical protein 243803..244264 Shewanella sp. W3-18-1 4660318 YP_961627.1 CDS Sputw3181_0221 NC_008750.1 244351 245763 R KEGG: shm:Shewmr7_3764 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator, NtrC, Fis family complement(244351..245763) Shewanella sp. W3-18-1 4660673 YP_961628.1 CDS Sputw3181_0222 NC_008750.1 245801 246847 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: shm:Shewmr7_3763 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase, nitrogen specific, NtrB complement(245801..246847) Shewanella sp. W3-18-1 4660833 YP_961629.1 CDS Sputw3181_0223 NC_008750.1 246969 247508 R KEGG: shm:Shewmr7_3762 hypothetical protein; hypothetical protein complement(246969..247508) Shewanella sp. W3-18-1 4661029 YP_961630.1 CDS Sputw3181_0224 NC_008750.1 247694 248056 R KEGG: sdn:Sden_1385 glutathione S-transferase-like protein; glutathione S-transferase-like protein complement(247694..248056) Shewanella sp. W3-18-1 4661032 YP_961631.1 CDS Sputw3181_0225 NC_008750.1 248217 248582 R PFAM: Glutathione S-transferase, N-terminal domain; KEGG: vvu:VV20508 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(248217..248582) Shewanella sp. W3-18-1 4661068 YP_961632.1 CDS Sputw3181_0226 NC_008750.1 248716 249408 R PFAM: ThiJ/PfpI domain protein; KEGG: psb:Psyr_3319 ThiJ/PfpI; ThiJ/PfpI domain-containing protein complement(248716..249408) Shewanella sp. W3-18-1 4661125 YP_961633.1 CDS Sputw3181_0227 NC_008750.1 249480 250637 R PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO4469 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase complement(249480..250637) Shewanella sp. W3-18-1 4661869 YP_961634.1 CDS Sputw3181_0228 NC_008750.1 250780 251388 R PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_3760 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(250780..251388) Shewanella sp. W3-18-1 4661796 YP_961635.1 CDS Sputw3181_0229 NC_008750.1 251670 251981 R PFAM: protein of unknown function DUF1255; KEGG: shm:Shewmr7_3759 protein of unknown function DUF1255; hypothetical protein complement(251670..251981) Shewanella sp. W3-18-1 4661708 YP_961636.1 CDS Sputw3181_0230 NC_008750.1 252340 254295 D PFAM: chemotaxis sensory transducer; KEGG: shm:Shewmr7_3758 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 252340..254295 Shewanella sp. W3-18-1 4661651 YP_961637.1 CDS Sputw3181_0231 NC_008750.1 254428 256530 R PFAM: protein of unknown function DUF323; Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_3757 protein of unknown function DUF323; hypothetical protein complement(254428..256530) Shewanella sp. W3-18-1 4661516 YP_961638.1 CDS Sputw3181_0232 NC_008750.1 256815 257684 D KEGG: son:SO4463 prolyl 4-hydroxylase, alpha subunit domain protein; prolyl 4-hydroxylase subunit alpha 256815..257684 Shewanella sp. W3-18-1 4661425 YP_961639.1 CDS Sputw3181_0233 NC_008750.1 257712 258212 D PFAM: transposase IS3/IS911 family protein; KEGG: sdn:Sden_2169 hypothetical protein; transposase IS3/IS911 family protein 257712..258212 Shewanella sp. W3-18-1 4661325 YP_961640.1 CDS Sputw3181_0234 NC_008750.1 258218 259267 D PFAM: Integrase, catalytic region; KEGG: sdn:Sden_2168 integrase, catalytic region; integrase catalytic subunit 258218..259267 Shewanella sp. W3-18-1 4661249 YP_961641.1 CDS Sputw3181_0236 NC_008750.1 259605 260000 D KEGG: she:Shewmr4_0265 hypothetical protein; hypothetical protein 259605..260000 Shewanella sp. W3-18-1 4660035 YP_961642.1 CDS Sputw3181_0237 NC_008750.1 260377 261231 D PFAM: PfkB domain protein; KEGG: son:SO4458 carbohydrate kinase, PfkB family; ribokinase-like domain-containing protein 260377..261231 Shewanella sp. W3-18-1 4660500 YP_961643.1 CDS Sputw3181_0238 NC_008750.1 261536 262996 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4457 GGDEF domain protein; diguanylate cyclase 261536..262996 Shewanella sp. W3-18-1 4660028 YP_961644.1 CDS Sputw3181_0239 NC_008750.1 263125 263820 D PFAM: 3-alpha; MOSC domain containing protein; KEGG: she:Shewmr4_0269 MOSC domain containing protein; MOSC domain-containing protein 263125..263820 Shewanella sp. W3-18-1 4659795 YP_961645.1 CDS Sputw3181_0240 NC_008750.1 263857 264213 D KEGG: shm:Shewmr7_3751 hypothetical protein; hypothetical protein 263857..264213 Shewanella sp. W3-18-1 4659782 YP_961646.1 CDS Sputw3181_0241 NC_008750.1 264281 266197 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3750 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(264281..266197) Shewanella sp. W3-18-1 4661298 YP_961647.1 CDS Sputw3181_0242 NC_008750.1 266543 268192 R PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: shm:Shewmr7_3749 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase complement(266543..268192) Shewanella sp. W3-18-1 4659071 YP_961648.1 CDS moaA NC_008750.1 268529 269542 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 268529..269542 Shewanella sp. W3-18-1 4658609 YP_961649.1 CDS moaC NC_008750.1 269640 270116 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 269640..270116 Shewanella sp. W3-18-1 4658541 YP_961650.1 CDS Sputw3181_0245 NC_008750.1 270140 270391 D TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: son:SO4450 molybdenum cofactor biosynthesis protein D; molybdopterin converting factor subunit 1 270140..270391 Shewanella sp. W3-18-1 4658556 YP_961651.1 CDS Sputw3181_0246 NC_008750.1 270393 270854 D PFAM: molybdopterin biosynthesis MoaE; KEGG: she:Shewmr4_0276 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE 270393..270854 Shewanella sp. W3-18-1 4658546 YP_961652.1 CDS Sputw3181_0247 NC_008750.1 270911 271723 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: she:Shewmr4_0277 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 270911..271723 Shewanella sp. W3-18-1 4661847 YP_961653.1 CDS Sputw3181_0248 NC_008750.1 271720 272403 D TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_3743 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit 271720..272403 Shewanella sp. W3-18-1 4661042 YP_961654.1 CDS Sputw3181_0249 NC_008750.1 272384 273487 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3742 ABC transporter related; ABC transporter-like protein 272384..273487 Shewanella sp. W3-18-1 4661515 YP_961655.1 CDS Sputw3181_0250 NC_008750.1 273704 274225 D KEGG: shm:Shewmr7_3741 hypothetical protein; hypothetical protein 273704..274225 Shewanella sp. W3-18-1 4657669 YP_961656.1 CDS Sputw3181_0251 NC_008750.1 274267 274944 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4428 DNA-binding response regulator; two component transcriptional regulator 274267..274944 Shewanella sp. W3-18-1 4661538 YP_961657.1 CDS Sputw3181_0252 NC_008750.1 274994 276250 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4427 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 274994..276250 Shewanella sp. W3-18-1 4661343 YP_961658.1 CDS Sputw3181_0253 NC_008750.1 276284 276973 D TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: she:Shewmr4_0283 pseudouridine synthase Rlu family protein, TIGR01621; pseudouridine synthase Rlu family protein 276284..276973 Shewanella sp. W3-18-1 4658428 YP_961659.1 CDS Sputw3181_0254 NC_008750.1 277094 277261 D PFAM: protein of unknown function UPF0057; KEGG: shm:Shewmr7_3736 protein of unknown function UPF0057; hypothetical protein 277094..277261 Shewanella sp. W3-18-1 4657795 YP_961660.1 CDS Sputw3181_0255 NC_008750.1 277335 279506 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_0286 TonB-dependent receptor; TonB-dependent receptor complement(277335..279506) Shewanella sp. W3-18-1 4657822 YP_961661.1 CDS Sputw3181_0256 NC_008750.1 279826 279990 D KEGG: son:SO4421 hypothetical protein; hypothetical protein 279826..279990 Shewanella sp. W3-18-1 4657831 YP_961662.1 CDS Sputw3181_0257 NC_008750.1 280007 280519 R PFAM: peptidase M23B; KEGG: shm:Shewmr7_3731 peptidase M23B; peptidase M23B complement(280007..280519) Shewanella sp. W3-18-1 4657841 YP_961663.1 CDS Sputw3181_0258 NC_008750.1 280559 281137 R KEGG: son:SO4419 hypothetical protein; hypothetical protein complement(280559..281137) Shewanella sp. W3-18-1 4657846 YP_961664.1 CDS Sputw3181_0259 NC_008750.1 281143 281790 R PFAM: CHAP domain containing protein; KEGG: son:SO4418 trypanothione synthetase domain protein; CHAP domain-containing protein complement(281143..281790) Shewanella sp. W3-18-1 4657849 YP_961665.1 CDS Sputw3181_0260 NC_008750.1 282099 283277 D KEGG: she:Shewmr4_0294 hypothetical protein; hypothetical protein 282099..283277 Shewanella sp. W3-18-1 4657850 YP_961666.1 CDS Sputw3181_0261 NC_008750.1 283282 284403 D PFAM: aminotransferase, class V; KEGG: shm:Shewmr7_3724 aminotransferase, class V; class V aminotransferase 283282..284403 Shewanella sp. W3-18-1 4657853 YP_961667.1 CDS Sputw3181_0262 NC_008750.1 284492 284815 R KEGG: son:SO4412 hypothetical protein; hypothetical protein complement(284492..284815) Shewanella sp. W3-18-1 4657870 YP_961668.1 CDS Sputw3181_0263 NC_008750.1 285573 286445 D KEGG: vch:VCA0021 hypothetical protein; hypothetical protein 285573..286445 Shewanella sp. W3-18-1 4657871 YP_961669.1 CDS Sputw3181_0264 NC_008750.1 286628 287500 D KEGG: vch:VCA0021 hypothetical protein; hypothetical protein 286628..287500 Shewanella sp. W3-18-1 4657876 YP_961670.1 CDS Sputw3181_0265 NC_008750.1 287683 288555 D KEGG: vfi:VF1233 hypothetical protein; hypothetical protein 287683..288555 Shewanella sp. W3-18-1 4657881 YP_961671.1 CDS glnA NC_008750.1 288882 290291 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase complement(288882..290291) Shewanella sp. W3-18-1 4657883 YP_961672.1 CDS Sputw3181_0267 NC_008750.1 291326 293137 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: son:SO4408 virulence regulator BipA; GTP-binding protein TypA 291326..293137 Shewanella sp. W3-18-1 4657889 YP_961673.1 CDS Sputw3181_0268 NC_008750.1 293209 294249 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4407 GGDEF family protein; diguanylate cyclase complement(293209..294249) Shewanella sp. W3-18-1 4657899 YP_961674.1 CDS Sputw3181_0269 NC_008750.1 294658 296844 D KEGG: she:Shewmr4_0311 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 294658..296844 Shewanella sp. W3-18-1 4657903 YP_961675.1 CDS Sputw3181_0270 NC_008750.1 296915 298129 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_3712 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(296915..298129) Shewanella sp. W3-18-1 4657929 YP_961676.1 CDS Sputw3181_0271 NC_008750.1 298624 298845 R KEGG: shm:Shewmr7_3709 hypothetical protein; hypothetical protein complement(298624..298845) Shewanella sp. W3-18-1 4657934 YP_961677.1 CDS rbn NC_008750.1 298927 299811 D RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 298927..299811 Shewanella sp. W3-18-1 4657943 YP_961678.1 CDS Sputw3181_0273 NC_008750.1 299883 300320 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 299883..300320 Shewanella sp. W3-18-1 4657944 YP_961679.1 CDS Sputw3181_0274 NC_008750.1 300410 300859 D TIGRFAM: thioesterase domain, putative; KEGG: son:SO4397 hypothetical acetyltransferase; thioesterase domain-containing protein 300410..300859 Shewanella sp. W3-18-1 4657956 YP_961680.1 CDS Sputw3181_0275 NC_008750.1 301016 302236 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: mag:amb2240 TPR repeat; peptidase S1 and S6, chymotrypsin/Hap 301016..302236 Shewanella sp. W3-18-1 4657958 YP_961681.1 CDS Sputw3181_0276 NC_008750.1 302248 302781 D hypothetical protein 302248..302781 Shewanella sp. W3-18-1 4657969 YP_961682.1 CDS Sputw3181_0277 NC_008750.1 302970 303566 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 302970..303566 Shewanella sp. W3-18-1 4657971 YP_961683.1 CDS Sputw3181_0278 NC_008750.1 303702 304268 R PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: shm:Shewmr7_3700 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(303702..304268) Shewanella sp. W3-18-1 4657974 YP_961684.1 CDS Sputw3181_0279 NC_008750.1 304432 305619 D TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: shm:Shewmr7_3699 benzoate transporter; benzoate transporter 304432..305619 Shewanella sp. W3-18-1 4657988 YP_961685.1 CDS Sputw3181_0280 NC_008750.1 305671 306147 R PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_3696 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(305671..306147) Shewanella sp. W3-18-1 4658005 YP_961686.1 CDS Sputw3181_0281 NC_008750.1 306599 307762 R SMART: HNH nuclease; KEGG: dar:Daro_1328 hypothetical protein; HNH nuclease complement(306599..307762) Shewanella sp. W3-18-1 4658012 YP_961687.1 CDS Sputw3181_0282 NC_008750.1 308340 308639 R PFAM: plasmid stabilization system; KEGG: shm:Shewmr7_3694 plasmid stabilization system; plasmid stabilization system protein complement(308340..308639) Shewanella sp. W3-18-1 4658019 YP_961688.1 CDS Sputw3181_0283 NC_008750.1 308648 308890 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: shm:Shewmr7_3693 prevent-host-death family protein; prevent-host-death family protein complement(308648..308890) Shewanella sp. W3-18-1 4658021 YP_961689.1 CDS Sputw3181_0284 NC_008750.1 309169 309912 R KEGG: she:Shewmr4_0334 hypothetical protein; hypothetical protein complement(309169..309912) Shewanella sp. W3-18-1 4658030 YP_961690.1 CDS Sputw3181_0285 NC_008750.1 309944 311203 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II complement(309944..311203) Shewanella sp. W3-18-1 4658035 YP_961691.1 CDS fabG NC_008750.1 311204 311929 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(311204..311929) Shewanella sp. W3-18-1 4658038 YP_961692.1 CDS Sputw3181_0287 NC_008750.1 312042 312575 R KEGG: son:SO4381 thioester dehydrase family protein; thioester dehydrase family protein complement(312042..312575) Shewanella sp. W3-18-1 4658047 YP_961693.1 CDS Sputw3181_0288 NC_008750.1 312580 313797 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(312580..313797) Shewanella sp. W3-18-1 4658055 YP_961694.1 CDS Sputw3181_0289 NC_008750.1 313826 314590 R KEGG: she:Shewmr4_0339 hypothetical protein; hypothetical protein complement(313826..314590) Shewanella sp. W3-18-1 4658057 YP_961695.1 CDS Sputw3181_0290 NC_008750.1 314595 315884 R PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: shm:Shewmr7_3686 monooxygenase, FAD-binding protein; FAD-binding monooxygenase complement(314595..315884) Shewanella sp. W3-18-1 4658066 YP_961696.1 CDS Sputw3181_0291 NC_008750.1 315908 318349 R KEGG: she:Shewmr4_0341 hypothetical protein; hypothetical protein complement(315908..318349) Shewanella sp. W3-18-1 4658075 YP_961697.1 CDS Sputw3181_0292 NC_008750.1 318352 319140 R KEGG: she:Shewmr4_0342 hypothetical protein; hypothetical protein complement(318352..319140) Shewanella sp. W3-18-1 4658084 YP_961698.1 CDS Sputw3181_0293 NC_008750.1 319140 319571 R PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_3683 thioesterase superfamily protein; thioesterase superfamily protein complement(319140..319571) Shewanella sp. W3-18-1 4658093 YP_961699.1 CDS Sputw3181_0294 NC_008750.1 319568 321142 R PFAM: phenylalanine/histidine ammonia-lyase; KEGG: she:Shewmr4_0344 histidine ammonia-lyase; histidine ammonia-lyase complement(319568..321142) Shewanella sp. W3-18-1 4658103 YP_961700.1 CDS Sputw3181_0295 NC_008750.1 321139 322998 R PFAM: glycosyl transferase, family 2; lipid A biosynthesis acyltransferase; KEGG: she:Shewmr4_0345 glycosyl transferase, family 2; glycosyl transferase family protein complement(321139..322998) Shewanella sp. W3-18-1 4658111 YP_961701.1 CDS Sputw3181_0296 NC_008750.1 322992 323399 R KEGG: son:SO4372 thioester dehydrase family protein; thioester dehydrase family protein complement(322992..323399) Shewanella sp. W3-18-1 4658120 YP_961702.1 CDS Sputw3181_0297 NC_008750.1 323392 324756 R KEGG: shm:Shewmr7_3679 hypothetical protein; hypothetical protein complement(323392..324756) Shewanella sp. W3-18-1 4658129 YP_961703.1 CDS Sputw3181_0298 NC_008750.1 324753 325301 R KEGG: shm:Shewmr7_3678 hypothetical protein; hypothetical protein complement(324753..325301) Shewanella sp. W3-18-1 4658151 YP_961704.1 CDS Sputw3181_0299 NC_008750.1 325301 325549 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(325301..325549) Shewanella sp. W3-18-1 4658155 YP_961705.1 CDS Sputw3181_0300 NC_008750.1 325559 325813 R KEGG: son:SO4368 acyl carrier protein, putative; acyl carrier protein complement(325559..325813) Shewanella sp. W3-18-1 4658162 YP_961706.1 CDS Sputw3181_0301 NC_008750.1 325797 326672 R PFAM: phospholipid/glycerol acyltransferase; KEGG: she:Shewmr4_0351 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(325797..326672) Shewanella sp. W3-18-1 4658174 YP_961707.1 CDS Sputw3181_0302 NC_008750.1 326665 327408 R KEGG: she:Shewmr4_0352 hypothetical protein; hypothetical protein complement(326665..327408) Shewanella sp. W3-18-1 4658179 YP_961708.1 CDS Sputw3181_0303 NC_008750.1 327748 328647 R KEGG: son:SO4365 hypothetical protein; hypothetical protein complement(327748..328647) Shewanella sp. W3-18-1 4658188 YP_961709.1 CDS Sputw3181_0304 NC_008750.1 328830 330920 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(328830..330920) Shewanella sp. W3-18-1 4658196 YP_961710.1 CDS Sputw3181_0305 NC_008750.1 331152 331865 D protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 331152..331865 Shewanella sp. W3-18-1 4658202 YP_961711.1 CDS Sputw3181_0306 NC_008750.1 331982 333427 R PFAM: OmpA/MotB domain protein; KEGG: she:Shewmr4_0916 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(331982..333427) Shewanella sp. W3-18-1 4658282 YP_961712.1 CDS Sputw3181_0307 NC_008750.1 333580 333933 D hypothetical protein 333580..333933 Shewanella sp. W3-18-1 4658421 YP_961713.1 CDS Sputw3181_0308 NC_008750.1 334488 334844 D hypothetical protein 334488..334844 Shewanella sp. W3-18-1 4658966 YP_961714.1 CDS Sputw3181_0309 NC_008750.1 335704 337050 D PFAM: HipA domain protein; KEGG: vvy:VV0798 hypothetical protein; HipA domain-containing protein 335704..337050 Shewanella sp. W3-18-1 4658961 YP_961715.1 CDS Sputw3181_0310 NC_008750.1 337047 337493 D PFAM: helix-turn-helix domain protein; KEGG: vvu:VV10402 predicted transcriptional regulator; XRE family transcriptional regulator 337047..337493 Shewanella sp. W3-18-1 4658628 YP_961716.1 CDS Sputw3181_0311 NC_008750.1 337490 337981 R PFAM: transposase IS3/IS911 family protein; KEGG: bxe:Bxe_A0222 type I site-specific deoxyribonuclease HsdR; transposase IS3/IS911 family protein complement(337490..337981) Shewanella sp. W3-18-1 4658632 YP_961717.1 CDS Sputw3181_0312 NC_008750.1 338036 338317 R PFAM: protein of unknown function UPF0150; KEGG: plu:plu2506 hypothetical protein; hypothetical protein complement(338036..338317) Shewanella sp. W3-18-1 4658654 YP_961718.1 CDS Sputw3181_0313 NC_008750.1 338408 338824 R KEGG: eca:ECA0367 putative DNA-binding protein; putative DNA-binding protein complement(338408..338824) Shewanella sp. W3-18-1 4658673 YP_961719.1 CDS Sputw3181_0314 NC_008750.1 339168 340421 R TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; protein of unknown function UPF0174; Miro domain protein; KEGG: ilo:IL0536 predicted C-terminal GTPase domain fused to uncharaterized conserved domain; small GTP-binding protein complement(339168..340421) Shewanella sp. W3-18-1 4658682 YP_961720.1 CDS Sputw3181_0315 NC_008750.1 340479 340844 R hypothetical protein complement(340479..340844) Shewanella sp. W3-18-1 4658698 YP_961721.1 CDS Sputw3181_0316 NC_008750.1 340971 342656 D PFAM: sigma-54 factor, interaction domain-containing protein; SMART: AAA ATPase; KEGG: ilo:IL0537 possible regulatory protein containing AAA-type ATPase domain; sigma-54 factor interaction domain-containing protein 340971..342656 Shewanella sp. W3-18-1 4658703 YP_961722.1 CDS Sputw3181_0317 NC_008750.1 342953 344677 D TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: noc:Noc_2903 type I restriction-modification system M subunit; type I restriction-modification system, M subunit 342953..344677 Shewanella sp. W3-18-1 4658707 YP_961723.1 CDS Sputw3181_0318 NC_008750.1 344670 345923 D PFAM: restriction modification system DNA specificity domain; KEGG: mja:MJ0130m type I restriction-modification enzyme, S subunit; restriction modification system DNA specificity subunit 344670..345923 Shewanella sp. W3-18-1 4658723 YP_961724.1 CDS Sputw3181_0319 NC_008750.1 345936 346781 D hypothetical protein 345936..346781 Shewanella sp. W3-18-1 4658729 YP_961725.1 CDS Sputw3181_0320 NC_008750.1 346769 347446 D hypothetical protein 346769..347446 Shewanella sp. W3-18-1 4658356 YP_961726.1 CDS Sputw3181_0321 NC_008750.1 347443 350604 D KEGG: son:SO0380 type I restriction-modification system, R subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; HsdR family type I site-specific deoxyribonuclease 347443..350604 Shewanella sp. W3-18-1 4658749 YP_961727.1 CDS Sputw3181_0322 NC_008750.1 350616 351323 D PFAM: protein of unknown function DUF45; KEGG: son:SO0379 hypothetical protein; hypothetical protein 350616..351323 Shewanella sp. W3-18-1 4658766 YP_961728.1 CDS Sputw3181_0323 NC_008750.1 351366 352676 D KEGG: bam:Bamb_0004 GTPase subunit of restriction endonuclease-like protein; hypothetical protein 351366..352676 Shewanella sp. W3-18-1 4658778 YP_961729.1 CDS Sputw3181_0324 NC_008750.1 352755 353414 D KEGG: ppr:PBPRC0061 hypothetical protein; hypothetical protein 352755..353414 Shewanella sp. W3-18-1 4658793 YP_961730.1 CDS Sputw3181_0325 NC_008750.1 353500 353883 D hypothetical protein 353500..353883 Shewanella sp. W3-18-1 4658795 YP_961731.1 CDS Sputw3181_0326 NC_008750.1 354054 354329 R hypothetical protein complement(354054..354329) Shewanella sp. W3-18-1 4658806 YP_961732.1 CDS Sputw3181_0327 NC_008750.1 354395 355330 R KEGG: son:SO4260 hypothetical protein; hypothetical protein complement(354395..355330) Shewanella sp. W3-18-1 4658814 YP_961733.1 CDS Sputw3181_0328 NC_008750.1 355753 355968 R PFAM: Prophage CP4-57 regulatory; KEGG: cps:CPS_2017 hypothetical protein; phage transcriptional regulator AlpA complement(355753..355968) Shewanella sp. W3-18-1 4658819 YP_961734.1 CDS Sputw3181_0329 NC_008750.1 356078 356911 R hypothetical protein complement(356078..356911) Shewanella sp. W3-18-1 4658821 YP_961735.1 CDS Sputw3181_0330 NC_008750.1 356921 358189 R PFAM: phage integrase family protein; KEGG: sdn:Sden_0317 phage integrase; phage integrase family protein complement(356921..358189) Shewanella sp. W3-18-1 4658823 YP_961736.1 CDS Sputw3181_0331 NC_008750.1 358391 359254 R PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: shm:Shewmr7_0351 hypothetical protein; hypothetical protein complement(358391..359254) Shewanella sp. W3-18-1 4658827 YP_961737.1 CDS rph NC_008750.1 359729 360442 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 359729..360442 Shewanella sp. W3-18-1 4658830 YP_961738.1 CDS pyrE NC_008750.1 360610 361251 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 360610..361251 Shewanella sp. W3-18-1 4658840 YP_961739.1 CDS folE NC_008750.1 361310 361954 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(361310..361954) Shewanella sp. W3-18-1 4658863 YP_961740.1 CDS slmA NC_008750.1 362178 362771 R FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein complement(362178..362771) Shewanella sp. W3-18-1 4658878 YP_961741.1 CDS dut NC_008750.1 362804 363262 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(362804..363262) Shewanella sp. W3-18-1 4658617 YP_961742.1 CDS Sputw3181_0337 NC_008750.1 363259 364479 R KEGG: shm:Shewmr7_0358 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(363259..364479) Shewanella sp. W3-18-1 4658928 YP_961743.1 CDS radC NC_008750.1 364602 365279 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 364602..365279 Shewanella sp. W3-18-1 4658971 YP_961744.1 CDS rpmB NC_008750.1 365401 365637 D required for 70S ribosome assembly; 50S ribosomal protein L28 365401..365637 Shewanella sp. W3-18-1 4659019 YP_961745.1 CDS rpmG NC_008750.1 365644 365817 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 365644..365817 Shewanella sp. W3-18-1 4659671 YP_961746.1 CDS Sputw3181_0341 NC_008750.1 365987 367240 D KEGG: pha:PSHAa2360 phage integrase; hypothetical protein 365987..367240 Shewanella sp. W3-18-1 4659606 YP_961747.1 CDS Sputw3181_0342 NC_008750.1 367237 368979 D KEGG: vch:VC0184 hypothetical protein; hypothetical protein 367237..368979 Shewanella sp. W3-18-1 4659163 YP_961748.1 CDS Sputw3181_0343 NC_008750.1 368983 370887 D PFAM: phage integrase family protein; KEGG: vch:VC0183 hypothetical protein; phage integrase family protein 368983..370887 Shewanella sp. W3-18-1 4659175 YP_961749.1 CDS Sputw3181_0344 NC_008750.1 370887 371285 D hypothetical protein 370887..371285 Shewanella sp. W3-18-1 4659178 YP_961750.1 CDS Sputw3181_0345 NC_008750.1 371524 372624 D KEGG: sec:SC146 hypothetical protein; hypothetical protein 371524..372624 Shewanella sp. W3-18-1 4659185 YP_961751.1 CDS Sputw3181_0346 NC_008750.1 372626 373585 D KEGG: sec:SC145 hypothetical protein; hypothetical protein 372626..373585 Shewanella sp. W3-18-1 4659010 YP_961752.1 CDS Sputw3181_0347 NC_008750.1 374421 374780 R KEGG: eba:ebB231 hypothetical protein; hypothetical protein complement(374421..374780) Shewanella sp. W3-18-1 4659012 YP_961753.1 CDS Sputw3181_0348 NC_008750.1 374870 375247 D PFAM: transcriptional regulator TrmB; Penicillinase repressor; KEGG: sfr:Sfri_2523 transcriptional repressor, CopY family protein; transcriptional regulator TrmB 374870..375247 Shewanella sp. W3-18-1 4659200 YP_961754.1 CDS Sputw3181_0349 NC_008750.1 375256 376236 D PFAM: peptidase M56, BlaR1; KEGG: sfr:Sfri_2522 peptidase M56, BlaR1; peptidase M56, BlaR1 375256..376236 Shewanella sp. W3-18-1 4659209 YP_961755.1 CDS Sputw3181_0350 NC_008750.1 376250 377533 D KEGG: tcx:Tcr_2097 outer membrane efflux protein; outer membrane efflux protein 376250..377533 Shewanella sp. W3-18-1 4659217 YP_961756.1 CDS Sputw3181_0351 NC_008750.1 377542 378786 D KEGG: tcx:Tcr_2096 secretion protein HlyD; secretion protein HlyD 377542..378786 Shewanella sp. W3-18-1 4659225 YP_961757.1 CDS Sputw3181_0352 NC_008750.1 378798 381941 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: tcx:Tcr_2095 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein 378798..381941 Shewanella sp. W3-18-1 4659230 YP_961758.1 CDS Sputw3181_0353 NC_008750.1 381931 382626 D KEGG: sfr:Sfri_2521 hypothetical protein; hypothetical protein 381931..382626 Shewanella sp. W3-18-1 4659244 YP_961759.1 CDS Sputw3181_0354 NC_008750.1 382646 383176 D KEGG: sfr:Sfri_2520 hypothetical protein; hypothetical protein 382646..383176 Shewanella sp. W3-18-1 4659246 YP_961760.1 CDS Sputw3181_0355 NC_008750.1 383202 383534 D KEGG: sfr:Sfri_2519 hypothetical protein; hypothetical protein 383202..383534 Shewanella sp. W3-18-1 4659257 YP_961761.1 CDS Sputw3181_0356 NC_008750.1 384231 384962 D hypothetical protein 384231..384962 Shewanella sp. W3-18-1 4659091 YP_961762.1 CDS Sputw3181_0357 NC_008750.1 385395 385748 D KEGG: shm:Shewmr7_2217 hypothetical protein; hypothetical protein 385395..385748 Shewanella sp. W3-18-1 4659263 YP_961763.1 CDS Sputw3181_0358 NC_008750.1 385793 386104 D PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 385793..386104 Shewanella sp. W3-18-1 4659269 YP_961764.1 CDS Sputw3181_0359 NC_008750.1 386143 386652 D KEGG: sdy:SDY_4291 IS911 ORF2; IS911 ORF2 386143..386652 Shewanella sp. W3-18-1 4659280 YP_961765.1 CDS Sputw3181_0360 NC_008750.1 386616 386975 D KEGG: vch:VCA0791 transposase OrfAB, subunit B; transposase OrfAB subunit B 386616..386975 Shewanella sp. W3-18-1 4659292 YP_961766.1 CDS Sputw3181_0361 NC_008750.1 387050 387598 D KEGG: shm:Shewmr7_2216 hypothetical protein; hypothetical protein 387050..387598 Shewanella sp. W3-18-1 4659299 YP_961767.1 CDS Sputw3181_0362 NC_008750.1 387808 389502 D KEGG: shm:Shewmr7_2215 hypothetical protein; hypothetical protein 387808..389502 Shewanella sp. W3-18-1 4659307 YP_961768.1 CDS Sputw3181_0363 NC_008750.1 389699 389893 D KEGG: noc:Noc_0575 hypothetical protein; hypothetical protein 389699..389893 Shewanella sp. W3-18-1 4659310 YP_961769.1 CDS Sputw3181_0364 NC_008750.1 389858 391468 R KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase complement(389858..391468) Shewanella sp. W3-18-1 4659315 YP_961770.1 CDS Sputw3181_0365 NC_008750.1 391702 391905 D KEGG: noc:Noc_0575 hypothetical protein; hypothetical protein 391702..391905 Shewanella sp. W3-18-1 4659334 YP_961771.1 CDS Sputw3181_0366 NC_008750.1 392013 392675 D KEGG: nme:NMB1008 hypothetical protein; hypothetical protein 392013..392675 Shewanella sp. W3-18-1 4659339 YP_961772.1 CDS Sputw3181_0367 NC_008750.1 392914 393819 R KEGG: spd:SPD_0493 hypothetical protein; hypothetical protein complement(392914..393819) Shewanella sp. W3-18-1 4659342 YP_961773.1 CDS Sputw3181_0368 NC_008750.1 394826 396145 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 394826..396145 Shewanella sp. W3-18-1 4659351 YP_961774.1 CDS Sputw3181_0369 NC_008750.1 396261 396779 D KEGG: son:SO4244 hypothetical protein; hypothetical protein 396261..396779 Shewanella sp. W3-18-1 4659354 YP_961775.1 CDS Sputw3181_0370 NC_008750.1 396826 397710 R TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4243 rarD protein; transporter DMT superfamily protein complement(396826..397710) Shewanella sp. W3-18-1 4659358 YP_961776.1 CDS Sputw3181_0371 NC_008750.1 397903 398367 R TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: she:Shewmr4_3591 uncharacterized domain 1; hypothetical protein complement(397903..398367) Shewanella sp. W3-18-1 4659364 YP_961777.1 CDS Sputw3181_0372 NC_008750.1 398664 400487 D KEGG: she:Shewmr4_3590 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 398664..400487 Shewanella sp. W3-18-1 4659368 YP_961778.1 CDS Sputw3181_0373 NC_008750.1 400469 402247 R SMART: Tetratricopeptide domain protein; KEGG: she:Shewmr4_3589 response regulator receiver protein; hypothetical protein complement(400469..402247) Shewanella sp. W3-18-1 4659378 YP_961779.1 CDS Sputw3181_0374 NC_008750.1 402754 404322 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 402754..404322 Shewanella sp. W3-18-1 4659384 YP_961780.1 CDS Sputw3181_0375 NC_008750.1 404393 405487 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 404393..405487 Shewanella sp. W3-18-1 4659396 YP_961781.1 CDS Sputw3181_0376 NC_008750.1 405487 406911 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 405487..406911 Shewanella sp. W3-18-1 4659414 YP_961782.1 CDS leuD NC_008750.1 406939 407544 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 406939..407544 Shewanella sp. W3-18-1 4659417 YP_961783.1 CDS Sputw3181_0378 NC_008750.1 408064 409419 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: shm:Shewmr7_0372 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 408064..409419 Shewanella sp. W3-18-1 4659421 YP_961784.1 CDS Sputw3181_0379 NC_008750.1 409599 411083 D TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: son:SO4230 glycerol kinase; glycerol kinase 409599..411083 Shewanella sp. W3-18-1 4659424 YP_961785.1 CDS Sputw3181_0380 NC_008750.1 411190 411519 R KEGG: shm:Shewmr7_0374 hypothetical protein; hypothetical protein complement(411190..411519) Shewanella sp. W3-18-1 4659435 YP_961786.1 CDS Sputw3181_0381 NC_008750.1 411978 412436 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 411978..412436 Shewanella sp. W3-18-1 4659445 YP_961787.1 CDS mraW NC_008750.1 412468 413409 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: shm:Shewmr7_0378 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 412468..413409 Shewanella sp. W3-18-1 4659446 YP_961788.1 CDS Sputw3181_0383 NC_008750.1 413420 413734 D PFAM: cell division protein FtsL; KEGG: she:Shewmr4_3577 cell division protein FtsL; cell division protein FtsL 413420..413734 Shewanella sp. W3-18-1 4659460 YP_961789.1 CDS Sputw3181_0384 NC_008750.1 413748 415499 D PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: son:SO4225 peptidoglycan synthetase FtsI; peptidoglycan glycosyltransferase 413748..415499 Shewanella sp. W3-18-1 4659861 YP_961790.1 CDS murE NC_008750.1 415496 416998 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 415496..416998 Shewanella sp. W3-18-1 4659869 YP_961791.1 CDS Sputw3181_0386 NC_008750.1 416995 418377 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO4223 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 416995..418377 Shewanella sp. W3-18-1 4659870 YP_961792.1 CDS mraY NC_008750.1 418378 419460 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 418378..419460 Shewanella sp. W3-18-1 4659877 YP_961793.1 CDS murD NC_008750.1 419467 420786 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 419467..420786 Shewanella sp. W3-18-1 4659886 YP_961794.1 CDS Sputw3181_0389 NC_008750.1 420776 421987 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: son:SO4220 cell division protein FtsW; cell division protein FtsW 420776..421987 Shewanella sp. W3-18-1 4659650 YP_961795.1 CDS murG NC_008750.1 421987 423075 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 421987..423075 Shewanella sp. W3-18-1 4659908 YP_961796.1 CDS murC NC_008750.1 423078 424544 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 423078..424544 Shewanella sp. W3-18-1 4659911 YP_961797.1 CDS Sputw3181_0392 NC_008750.1 424696 425445 D PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: shm:Shewmr7_0388 polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein 424696..425445 Shewanella sp. W3-18-1 4659917 YP_961798.1 CDS Sputw3181_0393 NC_008750.1 425426 426661 D PFAM: cell division protein FtsA; KEGG: shm:Shewmr7_0389 cell division protein FtsA; cell division protein FtsA 425426..426661 Shewanella sp. W3-18-1 4659923 YP_961799.1 CDS Sputw3181_0394 NC_008750.1 426695 427882 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 426695..427882 Shewanella sp. W3-18-1 4659929 YP_961800.1 CDS lpxC NC_008750.1 428063 428983 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 428063..428983 Shewanella sp. W3-18-1 4659933 YP_961801.1 CDS Sputw3181_0396 NC_008750.1 428995 429441 R KEGG: shm:Shewmr7_0392 hypothetical protein; hypothetical protein complement(428995..429441) Shewanella sp. W3-18-1 4659934 YP_961802.1 CDS Sputw3181_0397 NC_008750.1 429469 430368 D PFAM: peptidase M23B; KEGG: shm:Shewmr7_0393 peptidase M23B; peptidase M23B 429469..430368 Shewanella sp. W3-18-1 4659940 YP_961803.1 CDS Sputw3181_0398 NC_008750.1 430429 433158 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 430429..433158 Shewanella sp. W3-18-1 4659944 YP_961804.1 CDS Sputw3181_0399 NC_008750.1 439857 440729 R PFAM: Bile acid:sodium symporter; KEGG: shm:Shewmr7_3800 bile acid:sodium symporter; bile acid:sodium symporter complement(439857..440729) Shewanella sp. W3-18-1 4661570 YP_961805.1 CDS Sputw3181_0400 NC_008750.1 441158 442495 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 441158..442495 Shewanella sp. W3-18-1 4659962 YP_961806.1 CDS Sputw3181_0401 NC_008750.1 442609 442842 D KEGG: she:Shewmr4_3731 hypothetical protein; hypothetical protein 442609..442842 Shewanella sp. W3-18-1 4659969 YP_961807.1 CDS Sputw3181_0402 NC_008750.1 442889 443830 D KEGG: son:SO4522 hypothetical protein; hypothetical protein 442889..443830 Shewanella sp. W3-18-1 4659983 YP_961808.1 CDS Sputw3181_0403 NC_008750.1 443884 445884 R IrgA; binds ferric enterobactin; irgA gene expression is repressed by Fur and induced by the divergently transcribed upstream gene irgB; outer membrane protein; involved in iron metabolism; enterobactin receptor protein complement(443884..445884) Shewanella sp. W3-18-1 4659994 YP_961809.1 CDS Sputw3181_0404 NC_008750.1 445952 446980 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4524 transcriptional regulator, LysR family; LysR family transcriptional regulator 445952..446980 Shewanella sp. W3-18-1 4660002 YP_961810.1 CDS Sputw3181_0405 NC_008750.1 447112 447981 D PFAM: Patatin; KEGG: shm:Shewmr7_3804 patatin; patatin 447112..447981 Shewanella sp. W3-18-1 4660007 YP_961811.1 CDS Sputw3181_0406 NC_008750.1 447978 448919 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_3805 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(447978..448919) Shewanella sp. W3-18-1 4660010 YP_961812.1 CDS Sputw3181_0407 NC_008750.1 448948 449727 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: shm:Shewmr7_3806 protein of unknown function DUF6, transmembrane; hypothetical protein complement(448948..449727) Shewanella sp. W3-18-1 4660029 YP_961813.1 CDS Sputw3181_0408 NC_008750.1 450233 451723 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sfr:Sfri_0790 sulphate transporter; sulfate transporter 450233..451723 Shewanella sp. W3-18-1 4660038 YP_961814.1 CDS Sputw3181_0409 NC_008750.1 451758 452612 D PFAM: UspA domain protein; KEGG: sfr:Sfri_0791 UspA domain protein; UspA domain-containing protein 451758..452612 Shewanella sp. W3-18-1 4660053 YP_961815.1 CDS Sputw3181_0410 NC_008750.1 452703 453035 D KEGG: sil:SPO2248 DnaK suppressor protein, putative; TraR/DksA family transcriptional regulator 452703..453035 Shewanella sp. W3-18-1 4660060 YP_961816.1 CDS Sputw3181_0411 NC_008750.1 453153 453773 R PFAM: Resolvase, N-terminal domain; KEGG: sfr:Sfri_3477 resolvase, N-terminal domain protein; resolvase domain-containing protein complement(453153..453773) Shewanella sp. W3-18-1 4660062 YP_961817.1 CDS Sputw3181_0412 NC_008750.1 453943 454203 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: sfr:Sfri_3472 prevent-host-death family protein; prevent-host-death family protein 453943..454203 Shewanella sp. W3-18-1 4660065 YP_961818.1 CDS Sputw3181_0413 NC_008750.1 454399 454806 R TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: abo:ABO_1367 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(454399..454806) Shewanella sp. W3-18-1 4660081 YP_961819.1 CDS Sputw3181_0414 NC_008750.1 454902 455798 D KEGG: abo:ABO_1368 cation efflux system permease, putative; cation efflux system permease 454902..455798 Shewanella sp. W3-18-1 4660085 YP_961820.1 CDS Sputw3181_0415 NC_008750.1 455802 456314 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 455802..456314 Shewanella sp. W3-18-1 4660099 YP_961821.1 CDS Sputw3181_0416 NC_008750.1 456546 457625 D PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: bxe:Bxe_C0885 transposase, TnpA; transposase, IS204/IS1001/IS1096/IS1165 family protein 456546..457625 Shewanella sp. W3-18-1 4660120 YP_961822.1 CDS Sputw3181_0417 NC_008750.1 457898 459010 R PFAM: iron-containing alcohol dehydrogenase; KEGG: sec:SC2060 propanediol utilization: propanol dehydrogenase; iron-containing alcohol dehydrogenase complement(457898..459010) Shewanella sp. W3-18-1 4660141 YP_961823.1 CDS Sputw3181_0418 NC_008750.1 459026 460420 R PFAM: aldehyde dehydrogenase; KEGG: stm:STM2051 CoA-dependent propionaldehyde dehydrogenase; aldehyde dehydrogenase complement(459026..460420) Shewanella sp. W3-18-1 4660194 YP_961824.1 CDS Sputw3181_0419 NC_008750.1 460417 460926 R KEGG: ccr:CC2181 GlcG protein, putative; hypothetical protein complement(460417..460926) Shewanella sp. W3-18-1 4660305 YP_961825.1 CDS Sputw3181_0420 NC_008750.1 460959 461237 R PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: ssn:SSO_2069 putative propanediol utilization protein: polyhedral bodies; ethanolamine utilization protein EutN/carboxysome structural protein Ccml complement(460959..461237) Shewanella sp. W3-18-1 4661038 YP_961826.1 CDS Sputw3181_0421 NC_008750.1 461242 461727 R KEGG: sec:SC2056 propanediol utilization; propanediol utilization complement(461242..461727) Shewanella sp. W3-18-1 4660959 YP_961827.1 CDS Sputw3181_0422 NC_008750.1 461735 462370 R PFAM: Propanediol utilization protein; KEGG: sec:SC2055 propanediol utilization; propanediol utilization protein complement(461735..462370) Shewanella sp. W3-18-1 4661002 YP_961828.1 CDS Sputw3181_0423 NC_008750.1 462375 463241 R PFAM: microcompartments protein; KEGG: stt:t0828 putative propanediol utilization protein PduK; microcompartments protein complement(462375..463241) Shewanella sp. W3-18-1 4660435 YP_961829.1 CDS Sputw3181_0424 NC_008750.1 463269 463559 R PFAM: microcompartments protein; KEGG: ssn:SSO_2065 putative propanediol utilization protein: polyhedral bodies; microcompartment protein complement(463269..463559) Shewanella sp. W3-18-1 4660445 YP_961830.1 CDS Sputw3181_0425 NC_008750.1 463631 464458 R TIGRFAM: MIP family channel proteins; PFAM: major intrinsic protein; KEGG: stm:STM2037 Propanediol utilization: propanediol diffusion facilitator; MIP family channel protein complement(463631..464458) Shewanella sp. W3-18-1 4660446 YP_961831.1 CDS Sputw3181_0426 NC_008750.1 464493 465413 R TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: ecc:c4538 putative pyruvate formate-lyase 3 activating enzyme; glycyl-radical activating family protein complement(464493..465413) Shewanella sp. W3-18-1 4660450 YP_961832.1 CDS Sputw3181_0427 NC_008750.1 465552 468095 R KEGG: ctc:CTC00936 formate acetyltransferase 2; TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; pyruvate formate-lyase complement(465552..468095) Shewanella sp. W3-18-1 4660457 YP_961833.1 CDS Sputw3181_0428 NC_008750.1 468120 468935 R PFAM: microcompartments protein; KEGG: sec:SC2047 propanediol utilization: polyhedral bodies; microcompartment protein complement(468120..468935) Shewanella sp. W3-18-1 4660460 YP_961834.1 CDS Sputw3181_0429 NC_008750.1 468932 469234 R PFAM: microcompartments protein; KEGG: ssn:SSO_2058 putative propanediol utilization protein: polyhedral bodies; microcompartment protein complement(468932..469234) Shewanella sp. W3-18-1 4660463 YP_961835.1 CDS Sputw3181_0430 NC_008750.1 470247 471107 R TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: bsu:BG10319 PTS fructose-specific enzyme IID component; PTS system mannose/fructose/sorbose family transporter subunit IID complement(470247..471107) Shewanella sp. W3-18-1 4660468 YP_961836.1 CDS Sputw3181_0431 NC_008750.1 471118 471915 R TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS, sorbose-specific IIC subunit; KEGG: bld:BLi02829 PTS fructose-specific enzyme IIC component; RBL00186; PTS system mannose/fructose/sorbose family transporter subunit IIC complement(471118..471915) Shewanella sp. W3-18-1 4660226 YP_961837.1 CDS Sputw3181_0432 NC_008750.1 471931 472245 R PFAM: PTS system sorbose subfamily IIB component; KEGG: bsu:BG10317 PTS fructose-specific enzyme IIB component; PTS system sorbose subfamily transporter subunit IIB complement(471931..472245) Shewanella sp. W3-18-1 4660482 YP_961838.1 CDS Sputw3181_0433 NC_008750.1 472311 473234 R PFAM: transposase, IS4 family protein; KEGG: sgl:SG1040 transposase; transposase, IS4 family protein complement(472311..473234) Shewanella sp. W3-18-1 4660488 YP_961839.1 CDS Sputw3181_0434 NC_008750.1 473297 473638 R PFAM: IS1 transposase; KEGG: sec:SC1834 IS1 transposase; IS1 transposase complement(473297..473638) Shewanella sp. W3-18-1 4660490 YP_961840.1 CDS Sputw3181_0435 NC_008750.1 473984 474586 D PFAM: phage integrase family protein; KEGG: ecc:c0291 hypothetical protein; phage integrase family protein 473984..474586 Shewanella sp. W3-18-1 4660492 YP_961841.1 CDS Sputw3181_0436 NC_008750.1 474829 475860 D KEGG: sbo:SBO_P069 IS630 ORF; IS630 orf 474829..475860 Shewanella sp. W3-18-1 4660495 YP_961842.1 CDS Sputw3181_0437 NC_008750.1 476387 477268 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: stm:STM2036 Propanediol utilization: transcriptional regulation, AraC family; helix-turn-helix domain-containing protein complement(476387..477268) Shewanella sp. W3-18-1 4660505 YP_961843.1 CDS Sputw3181_0438 NC_008750.1 477517 477924 R TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: abo:ABO_1367 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(477517..477924) Shewanella sp. W3-18-1 4660507 YP_961844.1 CDS Sputw3181_0439 NC_008750.1 478020 478916 D KEGG: abo:ABO_1368 cation efflux system permease, putative; cation efflux system permease 478020..478916 Shewanella sp. W3-18-1 4660509 YP_961845.1 CDS Sputw3181_0440 NC_008750.1 478920 479432 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 478920..479432 Shewanella sp. W3-18-1 4660520 YP_961846.1 CDS Sputw3181_0441 NC_008750.1 479664 480743 D PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: bxe:Bxe_C0885 transposase, TnpA; transposase, IS204/IS1001/IS1096/IS1165 family protein 479664..480743 Shewanella sp. W3-18-1 4660523 YP_961847.1 CDS Sputw3181_0442 NC_008750.1 481036 484116 D PFAM: transposase Tn3 family protein; KEGG: sfr:Sfri_3470 transposase Tn3 family protein; transposase Tn3 family protein 481036..484116 Shewanella sp. W3-18-1 4660532 YP_961848.1 CDS Sputw3181_0443 NC_008750.1 484439 484903 D TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: shm:Shewmr7_3807 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase 484439..484903 Shewanella sp. W3-18-1 4660538 YP_961849.1 CDS Sputw3181_0444 NC_008750.1 485572 486111 D KEGG: she:Shewmr4_0915 hypothetical protein; hypothetical protein 485572..486111 Shewanella sp. W3-18-1 4660547 YP_961850.1 CDS Sputw3181_0445 NC_008750.1 486249 486680 D KEGG: she:Shewmr4_0329 hypothetical protein; hypothetical protein 486249..486680 Shewanella sp. W3-18-1 4660556 YP_961851.1 CDS Sputw3181_0446 NC_008750.1 487394 487945 R KEGG: she:Shewmr4_3739 hypothetical protein; hypothetical protein complement(487394..487945) Shewanella sp. W3-18-1 4660572 YP_961852.1 CDS Sputw3181_0447 NC_008750.1 488276 490303 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: son:SO4537 peptidase, putative; peptidase S9 prolyl oligopeptidase 488276..490303 Shewanella sp. W3-18-1 4660576 YP_961853.1 CDS Sputw3181_0448 NC_008750.1 490386 491819 R PFAM: peptidase M16 domain protein; KEGG: shm:Shewmr7_3814 peptidase M16 domain protein; peptidase M16 domain-containing protein complement(490386..491819) Shewanella sp. W3-18-1 4660582 YP_961854.1 CDS Sputw3181_0449 NC_008750.1 491816 493147 R PFAM: peptidase M16 domain protein; KEGG: shm:Shewmr7_3815 peptidase M16 domain protein; peptidase M16 domain-containing protein complement(491816..493147) Shewanella sp. W3-18-1 4660586 YP_961855.1 CDS Sputw3181_0450 NC_008750.1 494625 495299 R PFAM: cyclic nucleotide-binding; KEGG: son:SO4298 cyclic nucleotide binding protein, putative; cyclic nucleotide-binding protein complement(494625..495299) Shewanella sp. W3-18-1 4660599 YP_961856.1 CDS Sputw3181_0451 NC_008750.1 495603 496328 R PFAM: purine and other phosphorylases, family 1; KEGG: son:SO4297 uridine phosphorylase, putative; purine phosphorylase family protein 1 complement(495603..496328) Shewanella sp. W3-18-1 4660600 YP_961857.1 CDS Sputw3181_0452 NC_008750.1 496399 497604 R PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: son:SO4296 NupC family protein; Na+ dependent nucleoside transporter complement(496399..497604) Shewanella sp. W3-18-1 4660613 YP_961858.1 CDS Sputw3181_0453 NC_008750.1 497601 498152 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: son:SO4295 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) complement(497601..498152) Shewanella sp. W3-18-1 4660615 YP_961859.1 CDS Sputw3181_0454 NC_008750.1 498540 500621 R TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: sdn:Sden_3668 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA complement(498540..500621) Shewanella sp. W3-18-1 4660632 YP_961860.1 CDS Sputw3181_0455 NC_008750.1 500637 501767 R TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: sdn:Sden_3667 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB complement(500637..501767) Shewanella sp. W3-18-1 4660638 YP_961861.1 CDS Sputw3181_0456 NC_008750.1 501764 502462 R TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: sdn:Sden_3666 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR complement(501764..502462) Shewanella sp. W3-18-1 4660645 YP_961862.1 CDS Sputw3181_0457 NC_008750.1 502545 502814 R TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: sdn:Sden_3665 export protein FliQ, family 3; flagellar biosynthetic protein FliQ complement(502545..502814) Shewanella sp. W3-18-1 4660657 YP_961863.1 CDS fliP NC_008750.1 502819 503553 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(502819..503553) Shewanella sp. W3-18-1 4660659 YP_961864.1 CDS Sputw3181_0459 NC_008750.1 503550 503936 R TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: sdn:Sden_3663 surface presentation of antigens (SpoA) protein; flagellar motor switch protein FliN complement(503550..503936) Shewanella sp. W3-18-1 4660669 YP_961865.1 CDS Sputw3181_0460 NC_008750.1 503902 504783 R KEGG: sdn:Sden_3662 hypothetical protein; hypothetical protein complement(503902..504783) Shewanella sp. W3-18-1 4660677 YP_961866.1 CDS Sputw3181_0461 NC_008750.1 505859 507169 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: sdn:Sden_3661 sigma-54 factor, interaction region; sigma-54 dependent trancsriptional regulator 505859..507169 Shewanella sp. W3-18-1 4660685 YP_961867.1 CDS Sputw3181_0462 NC_008750.1 507196 507534 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: sdn:Sden_3660 flagellar hook-basal body complex protein (FliE); flagellar hook-basal body complex subunit FliE 507196..507534 Shewanella sp. W3-18-1 4660688 YP_961868.1 CDS fliF NC_008750.1 507547 509223 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar MS-ring protein 507547..509223 Shewanella sp. W3-18-1 4660691 YP_961869.1 CDS fliG NC_008750.1 509240 510226 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 509240..510226 Shewanella sp. W3-18-1 4660712 YP_961870.1 CDS fliH NC_008750.1 510226 510933 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 510226..510933 Shewanella sp. W3-18-1 4660716 YP_961871.1 CDS Sputw3181_0466 NC_008750.1 510911 512260 D KEGG: sdn:Sden_3656 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein; SMART: AAA ATPase; FliI/YscN family ATPase 510911..512260 Shewanella sp. W3-18-1 4660720 YP_961872.1 CDS Sputw3181_0467 NC_008750.1 512238 512660 D KEGG: sdn:Sden_3655 hypothetical protein; hypothetical protein 512238..512660 Shewanella sp. W3-18-1 4660730 YP_961873.1 CDS Sputw3181_0468 NC_008750.1 512737 513192 R KEGG: sdn:Sden_3654 hypothetical protein; hypothetical protein complement(512737..513192) Shewanella sp. W3-18-1 4660734 YP_961874.1 CDS Sputw3181_0469 NC_008750.1 513182 513466 R KEGG: sdn:Sden_3653 hypothetical protein; hypothetical protein complement(513182..513466) Shewanella sp. W3-18-1 4660738 YP_961875.1 CDS Sputw3181_0470 NC_008750.1 513566 514303 R PFAM: SAF domain; KEGG: sdn:Sden_3652 flageller protein FlgA; SAF domain-containing protein complement(513566..514303) Shewanella sp. W3-18-1 4660744 YP_961876.1 CDS flgB NC_008750.1 514401 514751 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar basal body rod protein FlgB 514401..514751 Shewanella sp. W3-18-1 4660763 YP_961877.1 CDS Sputw3181_0472 NC_008750.1 514760 515176 D TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: sdn:Sden_3650 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 514760..515176 Shewanella sp. W3-18-1 4660766 YP_961878.1 CDS Sputw3181_0473 NC_008750.1 515178 515840 D PFAM: flagellar hook capping protein; KEGG: sdn:Sden_3649 flagellar hook capping protein; flagellar hook capping protein 515178..515840 Shewanella sp. W3-18-1 4660770 YP_961879.1 CDS flgE NC_008750.1 515862 517049 D the hook connects flagellar basal body to the flagellar filament; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar hook protein FlgE 515862..517049 Shewanella sp. W3-18-1 4660789 YP_961880.1 CDS Sputw3181_0475 NC_008750.1 517064 517798 D TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; KEGG: sdn:Sden_3647 flagellar basal-body rod FlgF; flagellar basal-body rod protein FlgF 517064..517798 Shewanella sp. W3-18-1 4660807 YP_961881.1 CDS Sputw3181_0476 NC_008750.1 517810 518595 D TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sdn:Sden_3646 flagellar basal-body rod FlgG; flagellar basal-body rod protein FlgG 517810..518595 Shewanella sp. W3-18-1 4660864 YP_961882.1 CDS flgH NC_008750.1 518606 519268 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 518606..519268 Shewanella sp. W3-18-1 4660886 YP_961883.1 CDS flgI NC_008750.1 519284 520402 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 519284..520402 Shewanella sp. W3-18-1 4660972 YP_961884.1 CDS flgJ NC_008750.1 520402 520809 D FlgJ; flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; like the lateral flagella FlgJ in Vibrio parahaemolyticus this protein does not contains a C-terminal muramidase domain; peptidoglycan hydrolase 520402..520809 Shewanella sp. W3-18-1 4661838 YP_961885.1 CDS Sputw3181_0480 NC_008750.1 520806 522179 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: sdn:Sden_3642 flagellar hook-associated protein; flagellar hook-associated protein FlgK 520806..522179 Shewanella sp. W3-18-1 4661819 YP_961886.1 CDS Sputw3181_0481 NC_008750.1 522191 523108 D TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: sdn:Sden_3641 flagellin-like protein; flagellar hook-associated protein 3 522191..523108 Shewanella sp. W3-18-1 4661642 YP_961887.1 CDS Sputw3181_0482 NC_008750.1 523121 524134 D KEGG: sdn:Sden_3640 hypothetical protein; hypothetical protein 523121..524134 Shewanella sp. W3-18-1 4661541 YP_961888.1 CDS Sputw3181_0483 NC_008750.1 524280 525083 D PFAM: flagellin domain protein; KEGG: sdn:Sden_3639 flagellin-like protein; flagellin domain-containing protein 524280..525083 Shewanella sp. W3-18-1 4659081 YP_961889.1 CDS Sputw3181_0484 NC_008750.1 525321 526133 D PFAM: flagellin domain protein; KEGG: sdn:Sden_3639 flagellin-like protein; flagellin domain-containing protein 525321..526133 Shewanella sp. W3-18-1 4660765 YP_961890.1 CDS Sputw3181_0485 NC_008750.1 526430 527776 D PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: sdn:Sden_3638 flagellar hook-associated 2-like protein; flagellar hook-associated 2 domain-containing protein 526430..527776 Shewanella sp. W3-18-1 4660728 YP_961891.1 CDS Sputw3181_0486 NC_008750.1 527790 528170 D PFAM: flagellar protein FliS; KEGG: sdn:Sden_3637 flagellar protein FliS; flagellar protein FliS 527790..528170 Shewanella sp. W3-18-1 4660689 YP_961892.1 CDS Sputw3181_0487 NC_008750.1 528139 528465 D KEGG: sdn:Sden_3636 hypothetical protein; hypothetical protein 528139..528465 Shewanella sp. W3-18-1 4660654 YP_961893.1 CDS Sputw3181_0488 NC_008750.1 528455 529636 D PFAM: flagellar hook-length control protein; KEGG: sdn:Sden_3635 flagellar hook-length control protein; flagellar hook-length control protein 528455..529636 Shewanella sp. W3-18-1 4660639 YP_961894.1 CDS Sputw3181_0489 NC_008750.1 529652 530119 D PFAM: flagellar basal body-associated protein FliL; KEGG: sdn:Sden_3634 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 529652..530119 Shewanella sp. W3-18-1 4660593 YP_961895.1 CDS fliA NC_008750.1 530129 530845 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 530129..530845 Shewanella sp. W3-18-1 4660570 YP_961896.1 CDS Sputw3181_0491 NC_008750.1 530868 531725 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: sdn:Sden_3632 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 530868..531725 Shewanella sp. W3-18-1 4660335 YP_961897.1 CDS Sputw3181_0492 NC_008750.1 531725 532642 D PFAM: OmpA/MotB domain protein; KEGG: sdn:Sden_3631 OmpA/MotB; OmpA/MotB domain-containing protein 531725..532642 Shewanella sp. W3-18-1 4660491 YP_961898.1 CDS Sputw3181_0493 NC_008750.1 532677 533111 D PFAM: type IV pilus assembly PilZ; KEGG: sdn:Sden_3630 type IV pilus assembly PilZ; type IV pilus assembly PilZ 532677..533111 Shewanella sp. W3-18-1 4660311 YP_961899.1 CDS Sputw3181_0494 NC_008750.1 533120 533407 D KEGG: sdn:Sden_3629 hypothetical protein; hypothetical protein 533120..533407 Shewanella sp. W3-18-1 4660461 YP_961900.1 CDS fis NC_008750.1 533557 533862 R Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis complement(533557..533862) Shewanella sp. W3-18-1 4660434 YP_961901.1 CDS Sputw3181_0496 NC_008750.1 533879 534847 R TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; dihydroorotate dehydrogenase; KEGG: son:SO0394 tRNA-dihydrouridine synthase B; nifR3 family TIM-barrel protein complement(533879..534847) Shewanella sp. W3-18-1 4660052 YP_961902.1 CDS prmA NC_008750.1 535022 535903 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(535022..535903) Shewanella sp. W3-18-1 4660040 YP_961903.1 CDS Sputw3181_0498 NC_008750.1 536358 537083 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 536358..537083 Shewanella sp. W3-18-1 4659825 YP_961904.1 CDS Sputw3181_0499 NC_008750.1 537265 537936 D PFAM: fumarate reductase respiratory complex, transmembrane subunit; KEGG: she:Shewmr4_0403 fumarate reductase respiratory complex, transmembrane subunit; fumarate reductase respiratory complex, transmembrane subunit 537265..537936 Shewanella sp. W3-18-1 4660022 YP_961905.1 CDS Sputw3181_0500 NC_008750.1 538022 540028 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 538022..540028 Shewanella sp. W3-18-1 4661359 YP_961906.1 CDS frdB NC_008750.1 540028 540759 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 540028..540759 Shewanella sp. W3-18-1 4659895 YP_961907.1 CDS Sputw3181_0502 NC_008750.1 540810 541094 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: she:Shewmr4_0406 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(540810..541094) Shewanella sp. W3-18-1 4659882 YP_961908.1 CDS Sputw3181_0503 NC_008750.1 541091 542113 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0401 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase complement(541091..542113) Shewanella sp. W3-18-1 4659857 YP_961909.1 CDS Sputw3181_0504 NC_008750.1 542248 543174 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_0408 transcriptional regulator, LysR family; LysR family transcriptional regulator 542248..543174 Shewanella sp. W3-18-1 4659129 YP_961910.1 CDS rho NC_008750.1 543226 544491 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(543226..544491) Shewanella sp. W3-18-1 4659401 YP_961911.1 CDS Sputw3181_0506 NC_008750.1 544704 545030 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: shm:Shewmr7_3615 thioredoxin; thioredoxin complement(544704..545030) Shewanella sp. W3-18-1 4659347 YP_961912.1 CDS Sputw3181_0507 NC_008750.1 545183 546502 D enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 545183..546502 Shewanella sp. W3-18-1 4659320 YP_961913.1 CDS Sputw3181_0508 NC_008750.1 546503 547429 D PFAM: Ppx/GppA phosphatase; KEGG: shm:Shewmr7_3613 Ppx/GppA phosphatase; Ppx/GppA phosphatase 546503..547429 Shewanella sp. W3-18-1 4659293 YP_961914.1 CDS Sputw3181_0509 NC_008750.1 547753 548289 R KEGG: shm:Shewmr7_3612 hypothetical protein; hypothetical protein complement(547753..548289) Shewanella sp. W3-18-1 4659277 YP_961915.1 CDS Sputw3181_0510 NC_008750.1 548838 549242 R TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: she:Shewmr4_0414 mutator MutT protein; mutator MutT protein complement(548838..549242) Shewanella sp. W3-18-1 4659066 YP_961916.1 CDS Sputw3181_0511 NC_008750.1 549294 549503 R PFAM: protein of unknown function DUF329; KEGG: shm:Shewmr7_3610 protein of unknown function DUF329; hypothetical protein complement(549294..549503) Shewanella sp. W3-18-1 4659079 YP_961917.1 CDS Sputw3181_0512 NC_008750.1 549661 550395 R PFAM: protein of unknown function DUF1342; KEGG: she:Shewmr4_0416 protein of unknown function DUF1342; hypothetical protein complement(549661..550395) Shewanella sp. W3-18-1 4659069 YP_961918.1 CDS coaE NC_008750.1 550388 551005 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(550388..551005) Shewanella sp. W3-18-1 4659186 YP_961919.1 CDS Sputw3181_0514 NC_008750.1 551348 552274 R PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: son:SO0414 leader peptidase (prepilin peptidase) / N-methyltransferase; prepilin peptidase complement(551348..552274) Shewanella sp. W3-18-1 4659171 YP_961920.1 CDS Sputw3181_0515 NC_008750.1 552474 553739 R PFAM: type II secretion system protein; KEGG: shm:Shewmr7_3606 type II secretion system protein; type II secretion system protein complement(552474..553739) Shewanella sp. W3-18-1 4658838 YP_961921.1 CDS Sputw3181_0516 NC_008750.1 554190 555899 R TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO0416 type IV pilus biogenesis protein PilB; type IV-A pilus assembly ATPase PilB complement(554190..555899) Shewanella sp. W3-18-1 4660892 YP_961922.1 CDS Sputw3181_0517 NC_008750.1 555964 556422 R KEGG: par:Psyc_0240 probable pilus assembly protein major pilin PilA; putative pilus assembly protein major pilin PilA complement(555964..556422) Shewanella sp. W3-18-1 4660922 YP_961923.1 CDS Sputw3181_0518 NC_008750.1 557228 558307 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: bxe:Bxe_C0885 transposase, TnpA; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(557228..558307) Shewanella sp. W3-18-1 4658565 YP_961924.1 CDS Sputw3181_0519 NC_008750.1 558539 559051 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(558539..559051) Shewanella sp. W3-18-1 4658715 YP_961925.1 CDS Sputw3181_0520 NC_008750.1 559055 559951 R KEGG: abo:ABO_1368 cation efflux system permease, putative; cation efflux system permease complement(559055..559951) Shewanella sp. W3-18-1 4658701 YP_961926.1 CDS Sputw3181_0521 NC_008750.1 560047 560454 D TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: abo:ABO_1367 transcriptional regulator, MerR family; MerR family transcriptional regulator 560047..560454 Shewanella sp. W3-18-1 4658467 YP_961927.1 CDS Sputw3181_0522 NC_008750.1 560678 561565 R KEGG: shm:Shewmr7_3603 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(560678..561565) Shewanella sp. W3-18-1 4658648 YP_961928.1 CDS Sputw3181_0523 NC_008750.1 561884 562426 D PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: son:SO0421 AmpD protein; N-acetyl-anhydromuranmyl-L-alanine amidase 561884..562426 Shewanella sp. W3-18-1 4658637 YP_961929.1 CDS Sputw3181_0524 NC_008750.1 562626 563477 D involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 562626..563477 Shewanella sp. W3-18-1 4657740 YP_961930.1 CDS pdhR NC_008750.1 563987 564739 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 563987..564739 Shewanella sp. W3-18-1 4658189 YP_961931.1 CDS aceE NC_008750.1 564822 567488 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 564822..567488 Shewanella sp. W3-18-1 4658178 YP_961932.1 CDS Sputw3181_0527 NC_008750.1 567501 569510 D KEGG: son:SO0425 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 567501..569510 Shewanella sp. W3-18-1 4658146 YP_961933.1 CDS Sputw3181_0528 NC_008750.1 569658 571085 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 569658..571085 Shewanella sp. W3-18-1 4658116 YP_961934.1 CDS Sputw3181_0529 NC_008750.1 571217 575680 D KEGG: she:Shewmr4_0431 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 571217..575680 Shewanella sp. W3-18-1 4658078 YP_961935.1 CDS Sputw3181_0530 NC_008750.1 575774 577990 D PFAM: surface antigen (D15); Patatin; KEGG: she:Shewmr4_0432 patatin; patatin 575774..577990 Shewanella sp. W3-18-1 4661005 YP_961936.1 CDS Sputw3181_0531 NC_008750.1 578191 580233 D PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO0429 peptidase, M13 family; endothelin-converting protein 1 578191..580233 Shewanella sp. W3-18-1 4657708 YP_961937.1 CDS Sputw3181_0532 NC_008750.1 580282 580608 R KEGG: son:SO0430 hypothetical protein; hypothetical protein complement(580282..580608) Shewanella sp. W3-18-1 4657706 YP_961938.1 CDS Sputw3181_0533 NC_008750.1 580663 581316 R YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase complement(580663..581316) Shewanella sp. W3-18-1 4657702 YP_961939.1 CDS Sputw3181_0534 NC_008750.1 581752 584349 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 581752..584349 Shewanella sp. W3-18-1 4657925 YP_961940.1 CDS Sputw3181_0535 NC_008750.1 584428 584925 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(584428..584925) Shewanella sp. W3-18-1 4657874 YP_961941.1 CDS Sputw3181_0536 NC_008750.1 584986 585390 D hypothetical protein 584986..585390 Shewanella sp. W3-18-1 4657671 YP_961942.1 CDS hemE NC_008750.1 585371 586435 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 585371..586435 Shewanella sp. W3-18-1 4657762 YP_961943.1 CDS Sputw3181_0538 NC_008750.1 586748 589327 D KEGG: son:SO0437 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 586748..589327 Shewanella sp. W3-18-1 4661882 YP_961944.1 CDS Sputw3181_0539 NC_008750.1 589404 590207 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_3588 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 589404..590207 Shewanella sp. W3-18-1 4661881 YP_961945.1 CDS Sputw3181_0540 NC_008750.1 590211 590438 R KEGG: shm:Shewmr7_3587 hypothetical protein; hypothetical protein complement(590211..590438) Shewanella sp. W3-18-1 4661880 YP_961946.1 CDS Sputw3181_0541 NC_008750.1 590622 591920 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(590622..591920) Shewanella sp. W3-18-1 4661341 YP_961947.1 CDS purH NC_008750.1 591991 593622 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(591991..593622) Shewanella sp. W3-18-1 4661498 YP_961948.1 CDS zntR NC_008750.1 593960 594430 D mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 593960..594430 Shewanella sp. W3-18-1 4657801 YP_961949.1 CDS Sputw3181_0544 NC_008750.1 594433 595920 D PFAM: permease; KEGG: son:SO0444 hypothetical protein; permease 594433..595920 Shewanella sp. W3-18-1 4657814 YP_961950.1 CDS Sputw3181_0545 NC_008750.1 596039 596926 R PFAM: band 7 protein; KEGG: shm:Shewmr7_3581 band 7 protein; hypothetical protein complement(596039..596926) Shewanella sp. W3-18-1 4657855 YP_961951.1 CDS Sputw3181_0546 NC_008750.1 597328 597585 D KEGG: son:SO0447 hypothetical protein; hypothetical protein 597328..597585 Shewanella sp. W3-18-1 4657863 YP_961952.1 CDS Sputw3181_0547 NC_008750.1 597589 597879 D KEGG: son:SO0448 hypothetical protein; hypothetical protein 597589..597879 Shewanella sp. W3-18-1 4657880 YP_961953.1 CDS Sputw3181_0548 NC_008750.1 597885 599510 D PFAM: PepSY-associated TM helix domain protein; KEGG: shm:Shewmr7_3578 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein 597885..599510 Shewanella sp. W3-18-1 4657904 YP_961954.1 CDS Sputw3181_0549 NC_008750.1 599587 600753 R PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_0452 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(599587..600753) Shewanella sp. W3-18-1 4657947 YP_961955.1 CDS Sputw3181_0550 NC_008750.1 601346 602746 D TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: she:Shewmr4_0455 anion transporter; anion transporter 601346..602746 Shewanella sp. W3-18-1 4657968 YP_961956.1 CDS Sputw3181_0551 NC_008750.1 602825 603361 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0452 thioredoxin 2; thioredoxin complement(602825..603361) Shewanella sp. W3-18-1 4657990 YP_961957.1 CDS Sputw3181_0552 NC_008750.1 603486 603821 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO0453 peptidyl-prolyl cis-trans isomerase FkbP; peptidylprolyl isomerase, FKBP-type 603486..603821 Shewanella sp. W3-18-1 4657991 YP_961958.1 CDS Sputw3181_0553 NC_008750.1 603985 604959 D KEGG: she:Shewmr4_0458 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 603985..604959 Shewanella sp. W3-18-1 4658020 YP_961959.1 CDS Sputw3181_0554 NC_008750.1 605281 605496 D hypothetical protein 605281..605496 Shewanella sp. W3-18-1 4658027 YP_961960.1 CDS Sputw3181_0555 NC_008750.1 605830 606180 R KEGG: shm:Shewmr7_2786 hypothetical protein; hypothetical protein complement(605830..606180) Shewanella sp. W3-18-1 4658031 YP_961961.1 CDS Sputw3181_0556 NC_008750.1 606249 607916 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sfr:Sfri_3694 twin-arginine translocation pathway signal; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(606249..607916) Shewanella sp. W3-18-1 4658032 YP_961962.1 CDS Sputw3181_0557 NC_008750.1 608471 610207 R PFAM: Tannase and feruloyl esterase; KEGG: sfr:Sfri_3696 feruloyl esterase; tannase and feruloyl esterase complement(608471..610207) Shewanella sp. W3-18-1 4658080 YP_961963.1 CDS Sputw3181_0558 NC_008750.1 610347 611585 R PFAM: outer membrane porin; KEGG: shm:Shewmr7_2788 outer membrane porin; outer membrane porin complement(610347..611585) Shewanella sp. W3-18-1 4658090 YP_961964.1 CDS Sputw3181_0559 NC_008750.1 611869 612588 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: shm:Shewmr7_2789 regulatory protein GntR, HTH; regulatory protein GntR 611869..612588 Shewanella sp. W3-18-1 4658122 YP_961965.1 CDS Sputw3181_0560 NC_008750.1 612681 613070 R KEGG: she:Shewmr4_0459 hypothetical protein; hypothetical protein complement(612681..613070) Shewanella sp. W3-18-1 4658175 YP_961966.1 CDS Sputw3181_0561 NC_008750.1 613116 615149 R TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: she:Shewmr4_0460 TRAP transporter, 4TM/12TM fusion protein; TRAP transporter, 4TM/12TM fusion protein complement(613116..615149) Shewanella sp. W3-18-1 4657743 YP_961967.1 CDS Sputw3181_0562 NC_008750.1 615253 616209 R TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: she:Shewmr4_0461 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein complement(615253..616209) Shewanella sp. W3-18-1 4658263 YP_961968.1 CDS Sputw3181_0563 NC_008750.1 616448 616570 R KEGG: shm:Shewmr7_3567 hypothetical protein; hypothetical protein complement(616448..616570) Shewanella sp. W3-18-1 4658277 YP_961969.1 CDS Sputw3181_0564 NC_008750.1 616885 618375 R PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: shm:Shewmr7_3566 protein of unknown function DUF853, NPT hydrolase putative; hypothetical protein complement(616885..618375) Shewanella sp. W3-18-1 4657755 YP_961970.1 CDS Sputw3181_0565 NC_008750.1 618772 619209 D PFAM: NUDIX hydrolase; KEGG: son:SO0464 MutT/nudix family protein; NUDIX hydrolase 618772..619209 Shewanella sp. W3-18-1 4658301 YP_961971.1 CDS Sputw3181_0566 NC_008750.1 619235 620434 R KEGG: psb:Psyr_3988 hypothetical protein; hypothetical protein complement(619235..620434) Shewanella sp. W3-18-1 4658316 YP_961972.1 CDS Sputw3181_0567 NC_008750.1 621032 622054 R PFAM: glycosyl transferase, family 51; KEGG: bja:bll0910 penicillin-binding protein; glycosyl transferase family protein complement(621032..622054) Shewanella sp. W3-18-1 4658390 YP_961973.1 CDS uvrD NC_008750.1 623046 625214 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 623046..625214 Shewanella sp. W3-18-1 4661174 YP_961974.1 CDS ubiA NC_008750.1 625360 626220 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 625360..626220 Shewanella sp. W3-18-1 4658651 YP_961975.1 CDS Sputw3181_0570 NC_008750.1 626303 627367 D PFAM: 2-nitropropane dioxygenase, NPD; KEGG: she:Shewmr4_0476 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 626303..627367 Shewanella sp. W3-18-1 4658710 YP_961976.1 CDS Sputw3181_0571 NC_008750.1 627438 628520 D PFAM: protein of unknown function UPF0118; KEGG: she:Shewmr4_0479 protein of unknown function UPF0118; hypothetical protein 627438..628520 Shewanella sp. W3-18-1 4658758 YP_961977.1 CDS Sputw3181_0572 NC_008750.1 628524 628814 R KEGG: shm:Shewmr7_3550 putative mitomycin resistance protein; putative mitomycin resistance protein complement(628524..628814) Shewanella sp. W3-18-1 4658768 YP_961978.1 CDS Sputw3181_0573 NC_008750.1 628880 629458 R KEGG: son:SO0474 hypothetical protein; hypothetical protein complement(628880..629458) Shewanella sp. W3-18-1 4658769 YP_961979.1 CDS Sputw3181_0574 NC_008750.1 629634 630218 R PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_3545 redoxin domain protein; redoxin domain-containing protein complement(629634..630218) Shewanella sp. W3-18-1 4658792 YP_961980.1 CDS Sputw3181_0575 NC_008750.1 630235 630654 R PFAM: cytochrome C biogenesis protein; KEGG: shm:Shewmr7_3544 cytochrome c biogenesis protein; cytochrome C biogenesis protein complement(630235..630654) Shewanella sp. W3-18-1 4658825 YP_961981.1 CDS Sputw3181_0576 NC_008750.1 630654 632783 R TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO0478 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF complement(630654..632783) Shewanella sp. W3-18-1 4658829 YP_961982.1 CDS Sputw3181_0577 NC_008750.1 633328 635457 D KEGG: she:Shewmr4_0488 cytochrome c, putative; cytochrome c 633328..635457 Shewanella sp. W3-18-1 4658834 YP_961983.1 CDS Sputw3181_0578 NC_008750.1 635520 635960 D SMART: Rhodanese domain protein; KEGG: shm:Shewmr7_3541 rhodanese domain protein; rhodanese domain-containing protein 635520..635960 Shewanella sp. W3-18-1 4658835 YP_961984.1 CDS Sputw3181_0579 NC_008750.1 636046 636828 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: she:Shewmr4_0490 FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type 636046..636828 Shewanella sp. W3-18-1 4658851 YP_961985.1 CDS Sputw3181_0580 NC_008750.1 636863 637543 D KEGG: son:SO0482 formate-dependent nitrite reductase, NrfG protein; formate-dependent nitrite reductase complex subunit NrfG 636863..637543 Shewanella sp. W3-18-1 4658884 YP_961986.1 CDS Sputw3181_0581 NC_008750.1 637632 638123 D PFAM: NosL family protein; KEGG: son:SO0485 NosL protein; NosL family protein 637632..638123 Shewanella sp. W3-18-1 4658911 YP_961987.1 CDS Sputw3181_0582 NC_008750.1 638128 639423 D PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: son:SO0486 copper ABC transporter, periplasmic copper-binding protein; periplasmic copper-binding protein 638128..639423 Shewanella sp. W3-18-1 4658620 YP_961988.1 CDS Sputw3181_0583 NC_008750.1 639420 640454 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0487 copper ABC transporter, ATP-binding protein; ABC transporter-like protein 639420..640454 Shewanella sp. W3-18-1 4658925 YP_961989.1 CDS Sputw3181_0584 NC_008750.1 640451 641329 D KEGG: son:SO0488 copper ABC transporter, permease protein; copper ABC transporter permease 640451..641329 Shewanella sp. W3-18-1 4658952 YP_961990.1 CDS Sputw3181_0585 NC_008750.1 641551 642834 D PFAM: transcriptional regulator domain protein; KEGG: shm:Shewmr7_3532 transcriptional regulator, CadC; transcriptional regulator CadC 641551..642834 Shewanella sp. W3-18-1 4658591 YP_961991.1 CDS Sputw3181_0586 NC_008750.1 642852 643484 D KEGG: she:Shewmr4_0502 conserved hypothetical flavoprotein oxygenase; flavoprotein oxygenase 642852..643484 Shewanella sp. W3-18-1 4659165 YP_961992.1 CDS Sputw3181_0587 NC_008750.1 644216 645322 D hypothetical protein 644216..645322 Shewanella sp. W3-18-1 4659170 YP_961993.1 CDS fre NC_008750.1 646060 646758 R NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase complement(646060..646758) Shewanella sp. W3-18-1 4659188 YP_961994.1 CDS Sputw3181_0589 NC_008750.1 646871 648352 R TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: shm:Shewmr7_3525 UbiD family decarboxylases; UbiD family decarboxylase complement(646871..648352) Shewanella sp. W3-18-1 4659192 YP_961995.1 CDS Sputw3181_0590 NC_008750.1 648512 649288 D KEGG: she:Shewmr4_0507 hypothetical protein; hypothetical protein 648512..649288 Shewanella sp. W3-18-1 4659198 YP_961996.1 CDS Sputw3181_0591 NC_008750.1 649755 650429 D hypothetical protein 649755..650429 Shewanella sp. W3-18-1 4659202 YP_961997.1 CDS Sputw3181_0592 NC_008750.1 650492 651169 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: shm:Shewmr7_3522 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(650492..651169) Shewanella sp. W3-18-1 4658974 YP_961998.1 CDS Sputw3181_0593 NC_008750.1 651224 651658 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(651224..651658) Shewanella sp. W3-18-1 4659222 YP_961999.1 CDS Sputw3181_0594 NC_008750.1 651777 652208 R PFAM: Class I peptide chain release factor; KEGG: son:SO0513 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein complement(651777..652208) Shewanella sp. W3-18-1 4659232 YP_962000.1 CDS Sputw3181_0595 NC_008750.1 652345 652710 D KEGG: son:SO0514 hypothetical protein; hypothetical protein 652345..652710 Shewanella sp. W3-18-1 4659076 YP_962001.1 CDS Sputw3181_0596 NC_008750.1 652747 652953 D KEGG: shm:Shewmr7_3517 hypothetical protein; hypothetical protein 652747..652953 Shewanella sp. W3-18-1 4659286 YP_962002.1 CDS Sputw3181_0597 NC_008750.1 653096 653539 D KEGG: she:Shewmr4_0515 hypothetical protein; hypothetical protein 653096..653539 Shewanella sp. W3-18-1 4659295 YP_962003.1 CDS Sputw3181_0598 NC_008750.1 653870 655363 D KEGG: shm:Shewmr7_3515 outer membrane efflux protein; outer membrane efflux protein 653870..655363 Shewanella sp. W3-18-1 4659321 YP_962004.1 CDS Sputw3181_0599 NC_008750.1 655374 656639 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO0519 cation efflux protein, putative; RND family efflux transporter MFP subunit 655374..656639 Shewanella sp. W3-18-1 4659324 YP_962005.1 CDS Sputw3181_0600 NC_008750.1 656669 659896 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3513 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 656669..659896 Shewanella sp. W3-18-1 4659429 YP_962006.1 CDS Sputw3181_0601 NC_008750.1 660057 660380 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0521 hypothetical protein; antibiotic biosynthesis monooxygenase 660057..660380 Shewanella sp. W3-18-1 4659443 YP_962007.1 CDS mscL NC_008750.1 660458 660868 R forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(660458..660868) Shewanella sp. W3-18-1 4659145 YP_962008.1 CDS Sputw3181_0603 NC_008750.1 661067 661522 D PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_0525 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 661067..661522 Shewanella sp. W3-18-1 4659501 YP_962009.1 CDS Sputw3181_0604 NC_008750.1 661596 661922 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0527 hypothetical protein; antibiotic biosynthesis monooxygenase 661596..661922 Shewanella sp. W3-18-1 4659510 YP_962010.1 CDS Sputw3181_0605 NC_008750.1 662242 662499 D KEGG: shm:Shewmr7_3496 redox-active disulfide protein 2; redox-active disulfide protein 2 662242..662499 Shewanella sp. W3-18-1 4659152 YP_962011.1 CDS Sputw3181_0606 NC_008750.1 662532 663377 D KEGG: son:SO0540 hypothetical protein; hypothetical protein 662532..663377 Shewanella sp. W3-18-1 4659637 YP_962012.1 CDS Sputw3181_0607 NC_008750.1 663502 664938 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: son:SO0541 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 663502..664938 Shewanella sp. W3-18-1 4659853 YP_962013.1 CDS Sputw3181_0608 NC_008750.1 665185 666561 D TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: sdn:Sden_0649 amino acid carrier protein; amino acid carrier protein 665185..666561 Shewanella sp. W3-18-1 4659866 YP_962014.1 CDS Sputw3181_0609 NC_008750.1 666637 667992 R PFAM: protein of unknown function DUF1704; KEGG: son:SO0542 hypothetical protein; hypothetical protein complement(666637..667992) Shewanella sp. W3-18-1 4659684 YP_962015.1 CDS Sputw3181_0610 NC_008750.1 668394 668570 R KEGG: shm:Shewmr7_3488 hypothetical protein; hypothetical protein complement(668394..668570) Shewanella sp. W3-18-1 4659880 YP_962016.1 CDS Sputw3181_0611 NC_008750.1 668879 671032 D KEGG: she:Shewmr4_0543 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 668879..671032 Shewanella sp. W3-18-1 4659885 YP_962017.1 CDS Sputw3181_0612 NC_008750.1 671029 671463 D PFAM: response regulator receiver; KEGG: she:Shewmr4_0544 response regulator receiver protein; response regulator receiver protein 671029..671463 Shewanella sp. W3-18-1 4659887 YP_962018.1 CDS Sputw3181_0613 NC_008750.1 671473 673194 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: son:SO0545 response regulator; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 671473..673194 Shewanella sp. W3-18-1 4659906 YP_962019.1 CDS Sputw3181_0614 NC_008750.1 673355 674260 D TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO0546 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 673355..674260 Shewanella sp. W3-18-1 4659617 YP_962020.1 CDS Sputw3181_0615 NC_008750.1 674341 675033 R KEGG: she:Shewmr4_0547 hypothetical protein; hypothetical protein complement(674341..675033) Shewanella sp. W3-18-1 4659597 YP_962021.1 CDS Sputw3181_0616 NC_008750.1 675331 675603 R PFAM: histone family protein DNA-binding protein; KEGG: she:Shewmr4_0548 histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(675331..675603) Shewanella sp. W3-18-1 4659949 YP_962022.1 CDS Sputw3181_0617 NC_008750.1 675750 676547 R PFAM: response regulator receiver; KEGG: shm:Shewmr7_3481 response regulator receiver protein; response regulator receiver protein complement(675750..676547) Shewanella sp. W3-18-1 4659959 YP_962023.1 CDS Sputw3181_0618 NC_008750.1 676630 677094 R KEGG: son:SO0550 hypothetical protein; hypothetical protein complement(676630..677094) Shewanella sp. W3-18-1 4659976 YP_962024.1 CDS Sputw3181_0619 NC_008750.1 677139 677648 D KEGG: shm:Shewmr7_3479 hypothetical protein; hypothetical protein 677139..677648 Shewanella sp. W3-18-1 4659980 YP_962025.1 CDS Sputw3181_0620 NC_008750.1 677680 677988 R KEGG: shm:Shewmr7_3477 hypothetical protein; hypothetical protein complement(677680..677988) Shewanella sp. W3-18-1 4659997 YP_962026.1 CDS Sputw3181_0621 NC_008750.1 678261 678785 D KEGG: shm:Shewmr7_3476 hypothetical protein; hypothetical protein 678261..678785 Shewanella sp. W3-18-1 4660011 YP_962027.1 CDS Sputw3181_0622 NC_008750.1 678799 680553 R PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: shm:Shewmr7_3475 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(678799..680553) Shewanella sp. W3-18-1 4660049 YP_962028.1 CDS Sputw3181_0623 NC_008750.1 680717 681025 R KEGG: shm:Shewmr7_3474 hypothetical protein; hypothetical protein complement(680717..681025) Shewanella sp. W3-18-1 4660078 YP_962029.1 CDS Sputw3181_0624 NC_008750.1 681074 681973 D PFAM: GumN family protein; KEGG: son:SO0557 hypothetical protein; GumN family protein 681074..681973 Shewanella sp. W3-18-1 4659843 YP_962030.1 CDS Sputw3181_0625 NC_008750.1 681998 682771 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0558 smtA protein; type 11 methyltransferase complement(681998..682771) Shewanella sp. W3-18-1 4660146 YP_962031.1 CDS Sputw3181_0626 NC_008750.1 683180 684010 D PFAM: MaoC domain protein dehydratase; KEGG: son:SO0559 MaoC domain protein; dehydratase 683180..684010 Shewanella sp. W3-18-1 4660153 YP_962032.1 CDS Sputw3181_0627 NC_008750.1 684185 685897 D catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 684185..685897 Shewanella sp. W3-18-1 4660169 YP_962033.1 CDS Sputw3181_0628 NC_008750.1 686063 686239 R KEGG: she:Shewmr4_0564 hypothetical protein; hypothetical protein complement(686063..686239) Shewanella sp. W3-18-1 4657769 YP_962034.1 CDS Sputw3181_0629 NC_008750.1 686502 686765 D KEGG: shm:Shewmr7_3465 hypothetical protein; hypothetical protein 686502..686765 Shewanella sp. W3-18-1 4660990 YP_962035.1 CDS Sputw3181_0630 NC_008750.1 686843 688033 D KEGG: shm:Shewmr7_3464 hypothetical protein; hypothetical protein 686843..688033 Shewanella sp. W3-18-1 4660962 YP_962036.1 CDS Sputw3181_0631 NC_008750.1 688017 688925 D PFAM: periplasmic solute binding protein; KEGG: shm:Shewmr7_3463 periplasmic solute binding protein; periplasmic solute binding protein 688017..688925 Shewanella sp. W3-18-1 4660458 YP_962037.1 CDS Sputw3181_0632 NC_008750.1 688931 689719 D PFAM: ABC-3 protein; KEGG: shm:Shewmr7_3462 ABC-3 protein; ABC-3 protein 688931..689719 Shewanella sp. W3-18-1 4660536 YP_962038.1 CDS Sputw3181_0633 NC_008750.1 689829 690614 D KEGG: she:Shewmr4_0569 1-acyl-sn-glycerol-3-phosphate acyltransferases; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 689829..690614 Shewanella sp. W3-18-1 4660549 YP_962039.1 CDS Sputw3181_0634 NC_008750.1 690658 691062 D PFAM: protein of unknown function DUF1260; KEGG: shm:Shewmr7_3460 protein of unknown function DUF1260; hypothetical protein 690658..691062 Shewanella sp. W3-18-1 4660606 YP_962040.1 CDS Sputw3181_0635 NC_008750.1 691132 692106 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_3459 diguanylate cyclase; diguanylate cyclase complement(691132..692106) Shewanella sp. W3-18-1 4660619 YP_962041.1 CDS Sputw3181_0636 NC_008750.1 692125 693120 R PFAM: response regulator receiver; KEGG: son:SO0570 response regulator; CheC, inhibitor of MCP methylation complement(692125..693120) Shewanella sp. W3-18-1 4660622 YP_962042.1 CDS Sputw3181_0637 NC_008750.1 693639 694445 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 693639..694445 Shewanella sp. W3-18-1 4660648 YP_962043.1 CDS Sputw3181_0638 NC_008750.1 694504 695388 R KEGG: son:SO0573 hypothetical protein; hypothetical protein complement(694504..695388) Shewanella sp. W3-18-1 4660656 YP_962044.1 CDS Sputw3181_0639 NC_008750.1 695558 698464 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA complement(695558..698464) Shewanella sp. W3-18-1 4660661 YP_962045.1 CDS Sputw3181_0640 NC_008750.1 698867 700261 D PFAM: PhoH family protein; SMART: AAA ATPase; Nucleotide binding protein, PINc; KEGG: shm:Shewmr7_3454 PhoH family protein; PhoH family protein 698867..700261 Shewanella sp. W3-18-1 4660667 YP_962046.1 CDS Sputw3181_0641 NC_008750.1 700473 704177 D KEGG: she:Shewmr4_0577 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Cache domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 700473..704177 Shewanella sp. W3-18-1 4660723 YP_962047.1 CDS Sputw3181_0642 NC_008750.1 704246 706648 D KEGG: son:SO0578 hypothetical protein; hypothetical protein 704246..706648 Shewanella sp. W3-18-1 4660784 YP_962048.1 CDS Sputw3181_0643 NC_008750.1 706677 708485 R PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: shm:Shewmr7_3451 serine/threonine protein kinase; protein kinase complement(706677..708485) Shewanella sp. W3-18-1 4660816 YP_962049.1 CDS Sputw3181_0644 NC_008750.1 708734 709075 D KEGG: she:Shewmr4_0580 hypothetical protein; hypothetical protein 708734..709075 Shewanella sp. W3-18-1 4660861 YP_962050.1 CDS Sputw3181_0645 NC_008750.1 709179 709835 D catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 709179..709835 Shewanella sp. W3-18-1 4660418 YP_962051.1 CDS Sputw3181_0646 NC_008750.1 710090 710281 R PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: she:Shewmr4_0582 BFD domain protein (2Fe-2S)-binding domain protein; BFD/(2Fe-2S)-binding domain-containing protein complement(710090..710281) Shewanella sp. W3-18-1 4661664 YP_962052.1 CDS Sputw3181_0647 NC_008750.1 710532 712106 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: shm:Shewmr7_3447 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer 710532..712106 Shewanella sp. W3-18-1 4661835 YP_962053.1 CDS Sputw3181_0648 NC_008750.1 712503 712838 D KEGG: shm:Shewmr7_3445 hypothetical protein; hypothetical protein 712503..712838 Shewanella sp. W3-18-1 4661486 YP_962054.1 CDS Sputw3181_0649 NC_008750.1 712854 713576 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: shm:Shewmr7_3444 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(712854..713576) Shewanella sp. W3-18-1 4661177 YP_962055.1 CDS Sputw3181_0650 NC_008750.1 713591 716797 R PFAM: MscS Mechanosensitive ion channel; KEGG: she:Shewmr4_0587 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(713591..716797) Shewanella sp. W3-18-1 4661088 YP_962056.1 CDS Sputw3181_0651 NC_008750.1 716867 717751 R PFAM: protein of unknown function DUF6, transmembrane; UAA transporter; KEGG: shm:Shewmr7_3442 protein of unknown function DUF6, transmembrane; hypothetical protein complement(716867..717751) Shewanella sp. W3-18-1 4661164 YP_962057.1 CDS psd NC_008750.1 717767 718636 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(717767..718636) Shewanella sp. W3-18-1 4661092 YP_962058.1 CDS Sputw3181_0653 NC_008750.1 718705 719769 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(718705..719769) Shewanella sp. W3-18-1 4661123 YP_962059.1 CDS Sputw3181_0654 NC_008750.1 719882 720427 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 719882..720427 Shewanella sp. W3-18-1 4661093 YP_962060.1 CDS Sputw3181_0655 NC_008750.1 721977 722432 D KEGG: shm:Shewmr7_3438 hypothetical protein; hypothetical protein 721977..722432 Shewanella sp. W3-18-1 4659074 YP_962061.1 CDS Sputw3181_0656 NC_008750.1 722726 724225 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: she:Shewmr4_0593 carbohydrate kinase, YjeF related protein; carbohydrate kinase 722726..724225 Shewanella sp. W3-18-1 4661110 YP_962062.1 CDS Sputw3181_0657 NC_008750.1 724314 724772 D PFAM: protein of unknown function UPF0079; KEGG: son:SO0599 conserved hypothetical protein TIGR00150; hypothetical protein 724314..724772 Shewanella sp. W3-18-1 4661084 YP_962063.1 CDS Sputw3181_0658 NC_008750.1 724781 726211 D PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: she:Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 724781..726211 Shewanella sp. W3-18-1 4661079 YP_962064.1 CDS mutL NC_008750.1 726213 728138 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 726213..728138 Shewanella sp. W3-18-1 4661076 YP_962065.1 CDS miaA NC_008750.1 728154 729068 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 728154..729068 Shewanella sp. W3-18-1 4661065 YP_962066.1 CDS Sputw3181_0661 NC_008750.1 729159 729431 D TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: shm:Shewmr7_3432 RNA chaperone Hfq; RNA chaperone Hfq 729159..729431 Shewanella sp. W3-18-1 4660425 YP_962067.1 CDS Sputw3181_0662 NC_008750.1 729455 730762 D PFAM: GTP-binding protein, HSR1-related; KEGG: son:SO0604 GTP-binding protein HflX; HSR1-like GTP-binding protein 729455..730762 Shewanella sp. W3-18-1 4661022 YP_962068.1 CDS Sputw3181_0663 NC_008750.1 730799 731941 D TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: she:Shewmr4_0600 HflK protein; HflK protein 730799..731941 Shewanella sp. W3-18-1 4660423 YP_962069.1 CDS Sputw3181_0664 NC_008750.1 731945 732838 D TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: shm:Shewmr7_3429 HflC protein; HflC protein 731945..732838 Shewanella sp. W3-18-1 4661054 YP_962070.1 CDS Sputw3181_0665 NC_008750.1 733202 733792 D KEGG: shm:Shewmr7_3428 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 733202..733792 Shewanella sp. W3-18-1 4661842 YP_962071.1 CDS Sputw3181_0666 NC_008750.1 733792 735006 D PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; KEGG: son:SO0609 ubiquinol-cytochrome c reductase, cytochrome b; cytochrome b/b6 domain-containing protein 733792..735006 Shewanella sp. W3-18-1 4661859 YP_962072.1 CDS Sputw3181_0667 NC_008750.1 735006 735704 D PFAM: cytochrome c1; KEGG: shm:Shewmr7_3426 cytochrome c1; cytochrome c1 735006..735704 Shewanella sp. W3-18-1 4661849 YP_962073.1 CDS sspA NC_008750.1 735801 736430 D transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 735801..736430 Shewanella sp. W3-18-1 4661834 YP_962074.1 CDS Sputw3181_0669 NC_008750.1 736430 736867 D PFAM: Stringent starvation protein B; KEGG: shm:Shewmr7_3424 stringent starvation protein B; ClpXP protease specificity-enhancing factor 736430..736867 Shewanella sp. W3-18-1 4661747 YP_962075.1 CDS Sputw3181_0670 NC_008750.1 737091 737627 D KEGG: she:Shewmr4_3418 hypothetical protein; hypothetical protein 737091..737627 Shewanella sp. W3-18-1 4661815 YP_962076.1 CDS Sputw3181_0671 NC_008750.1 737791 739425 D PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: cps:CPS_0756 sensory box sensor histidine kinase/DNA-binding response regulator, AraC family; response regulator receiver protein 737791..739425 Shewanella sp. W3-18-1 4661795 YP_962077.1 CDS Sputw3181_0672 NC_008750.1 739403 740881 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cvi:CV0964 hypothetical protein; diguanylate cyclase complement(739403..740881) Shewanella sp. W3-18-1 4661809 YP_962078.1 CDS Sputw3181_0673 NC_008750.1 741264 742541 D KEGG: mhu:Mhun_1163 PKD; hypothetical protein 741264..742541 Shewanella sp. W3-18-1 4661808 YP_962079.1 CDS Sputw3181_0674 NC_008750.1 742544 745915 D PFAM: PKD domain containing protein; protein of unknown function DUF1566; KEGG: pat:Patl_3292 protein of unknown function DUF1566; hypothetical protein 742544..745915 Shewanella sp. W3-18-1 4661807 YP_962080.1 CDS Sputw3181_0675 NC_008750.1 746049 746579 D PFAM: protein of unknown function DUF1566; KEGG: pat:Patl_3291 protein of unknown function DUF1566; hypothetical protein 746049..746579 Shewanella sp. W3-18-1 4661768 YP_962081.1 CDS Sputw3181_0676 NC_008750.1 746899 747636 D PFAM: protein of unknown function DUF1566; KEGG: pat:Patl_3291 protein of unknown function DUF1566; hypothetical protein 746899..747636 Shewanella sp. W3-18-1 4661801 YP_962082.1 CDS Sputw3181_0677 NC_008750.1 747709 748782 D KEGG: wsu:WS1457 hypothetical protein; hypothetical protein 747709..748782 Shewanella sp. W3-18-1 4661748 YP_962083.1 CDS Sputw3181_0678 NC_008750.1 748770 749612 D hypothetical protein 748770..749612 Shewanella sp. W3-18-1 4661773 YP_962084.1 CDS Sputw3181_0679 NC_008750.1 749741 752587 D PFAM: peptidase M16 domain protein; KEGG: son:SO4022 peptidase, M16 family; peptidase M16 domain-containing protein 749741..752587 Shewanella sp. W3-18-1 4661765 YP_962085.1 CDS Sputw3181_0680 NC_008750.1 752888 753310 D KEGG: son:SO4020 transcriptional regulator, LysR family; LysR family transcriptional regulator 752888..753310 Shewanella sp. W3-18-1 4661761 YP_962086.1 CDS Sputw3181_0681 NC_008750.1 753335 754033 D PFAM: GCN5-related N-acetyltransferase; KEGG: vfi:VFA0653 IAA acetyltransferase; N-acetyltransferase GCN5 753335..754033 Shewanella sp. W3-18-1 4661760 YP_962087.1 CDS Sputw3181_0682 NC_008750.1 754150 756864 R KEGG: son:SO4019 hypothetical protein; hypothetical protein complement(754150..756864) Shewanella sp. W3-18-1 4661740 YP_962088.1 CDS Sputw3181_0683 NC_008750.1 757238 758608 D KEGG: she:Shewmr4_3415 hypothetical protein; hypothetical protein 757238..758608 Shewanella sp. W3-18-1 4661750 YP_962089.1 CDS Sputw3181_0684 NC_008750.1 758691 760106 R PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: son:SO4017 transglycosylase, Slt family; lytic transglycosylase, catalytic complement(758691..760106) Shewanella sp. W3-18-1 4661733 YP_962090.1 CDS Sputw3181_0685 NC_008750.1 760293 761633 D PFAM: protein kinase; leucine-rich repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein, typical subtype; KEGG: son:SO4016 hypothetical protein; protein kinase 760293..761633 Shewanella sp. W3-18-1 4661137 YP_962091.1 CDS Sputw3181_0686 NC_008750.1 761927 763093 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO4015 hypothetical protein; RND family efflux transporter MFP subunit 761927..763093 Shewanella sp. W3-18-1 4661728 YP_962092.1 CDS Sputw3181_0687 NC_008750.1 763093 766191 D PFAM: acriflavin resistance protein; KEGG: son:SO4014 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 763093..766191 Shewanella sp. W3-18-1 4661722 YP_962093.1 CDS Sputw3181_0688 NC_008750.1 766404 768227 D KEGG: son:SO4013 hypothetical protein; hypothetical protein 766404..768227 Shewanella sp. W3-18-1 4661698 YP_962094.1 CDS Sputw3181_0689 NC_008750.1 768438 769439 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0640 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase 768438..769439 Shewanella sp. W3-18-1 4661700 YP_962095.1 CDS Sputw3181_0690 NC_008750.1 769778 770182 D KEGG: son:SO0691 hypothetical protein; hypothetical protein 769778..770182 Shewanella sp. W3-18-1 4661050 YP_962096.1 CDS Sputw3181_0691 NC_008750.1 770299 771333 R PFAM: Aldose 1-epimerase; KEGG: son:SO0693 aldose 1-epimerase; aldose 1-epimerase complement(770299..771333) Shewanella sp. W3-18-1 4661686 YP_962097.1 CDS Sputw3181_0692 NC_008750.1 771362 772507 R KEGG: she:Shewmr4_3408 galactokinase; TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; galactokinase complement(771362..772507) Shewanella sp. W3-18-1 4661666 YP_962098.1 CDS Sputw3181_0693 NC_008750.1 772756 774399 R PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: son:SO0695 glutathione-regulated potassium-efflux system protein KefC, putative; sodium/hydrogen exchanger complement(772756..774399) Shewanella sp. W3-18-1 4661668 YP_962099.1 CDS dipZ NC_008750.1 774593 776407 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein complement(774593..776407) Shewanella sp. W3-18-1 4661654 YP_962100.1 CDS Sputw3181_0695 NC_008750.1 776404 776727 R PFAM: CutA1 divalent ion tolerance protein; KEGG: shm:Shewmr7_0547 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein complement(776404..776727) Shewanella sp. W3-18-1 4661646 YP_962101.1 CDS Sputw3181_0696 NC_008750.1 776980 777573 D PFAM: FxsA cytoplasmic membrane protein; KEGG: shm:Shewmr7_0548 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein 776980..777573 Shewanella sp. W3-18-1 4661619 YP_962102.1 CDS Sputw3181_0697 NC_008750.1 777570 778934 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bbr:BB1960 hypothetical protein; diguanylate cyclase complement(777570..778934) Shewanella sp. W3-18-1 4661614 YP_962103.1 CDS Sputw3181_0698 NC_008750.1 778989 779240 R KEGG: shm:Shewmr7_0573 hypothetical protein; hypothetical protein complement(778989..779240) Shewanella sp. W3-18-1 4661568 YP_962104.1 CDS Sputw3181_0699 NC_008750.1 779406 779948 R PFAM: isochorismatase hydrolase; KEGG: she:Shewmr4_3363 isochorismatase hydrolase; isochorismatase hydrolase complement(779406..779948) Shewanella sp. W3-18-1 4661557 YP_962105.1 CDS Sputw3181_0700 NC_008750.1 780245 780583 D PFAM: nitrogen regulatory protein P-II; KEGG: son:SO0761 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II 780245..780583 Shewanella sp. W3-18-1 4661554 YP_962106.1 CDS Sputw3181_0701 NC_008750.1 780594 781844 D PFAM: Rh family protein/ammonium transporter; KEGG: shm:Shewmr7_0592 Rh family protein/ammonium transporter; Rh family protein/ammonium transporter 780594..781844 Shewanella sp. W3-18-1 4661138 YP_962107.1 CDS Sputw3181_0702 NC_008750.1 782010 782339 D KEGG: shm:Shewmr7_0593 hypothetical protein; hypothetical protein 782010..782339 Shewanella sp. W3-18-1 4661523 YP_962108.1 CDS Sputw3181_0703 NC_008750.1 782627 783682 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 782627..783682 Shewanella sp. W3-18-1 4661131 YP_962109.1 CDS Sputw3181_0704 NC_008750.1 783730 783909 R KEGG: shm:Shewmr7_0596 hypothetical protein; hypothetical protein complement(783730..783909) Shewanella sp. W3-18-1 4661519 YP_962110.1 CDS Sputw3181_0705 NC_008750.1 784356 786152 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0754 ABC transporter, ATP-binding protein; ABC transporter-like protein 784356..786152 Shewanella sp. W3-18-1 4661495 YP_962111.1 CDS Sputw3181_0706 NC_008750.1 786232 786489 D KEGG: shm:Shewmr7_0598 hypothetical protein; hypothetical protein 786232..786489 Shewanella sp. W3-18-1 4661502 YP_962112.1 CDS Sputw3181_0707 NC_008750.1 786533 786742 R KEGG: son:SO0752 hypothetical protein; hypothetical protein complement(786533..786742) Shewanella sp. W3-18-1 4661487 YP_962113.1 CDS Sputw3181_0708 NC_008750.1 786892 788382 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: shm:Shewmr7_0600 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase complement(786892..788382) Shewanella sp. W3-18-1 4661485 YP_962114.1 CDS Sputw3181_0709 NC_008750.1 788394 788999 R PFAM: Phosphoglycerate mutase; KEGG: son:SO0749 hypothetical protein; phosphoglycerate mutase complement(788394..788999) Shewanella sp. W3-18-1 4661483 YP_962115.1 CDS Sputw3181_0710 NC_008750.1 789194 789799 D KEGG: son:SO0748 hypothetical protein; hypothetical protein 789194..789799 Shewanella sp. W3-18-1 4661488 YP_962116.1 CDS Sputw3181_0711 NC_008750.1 789969 790718 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO0747 ferredoxin--NADP reductase; oxidoreductase FAD/NAD(P)-binding subunit 789969..790718 Shewanella sp. W3-18-1 4661176 YP_962117.1 CDS Sputw3181_0712 NC_008750.1 790818 791414 D PFAM: Glutathione S-transferase, N-terminal domain; KEGG: shm:Shewmr7_0604 glutathione S-transferase, N-terminal domain protein; glutathione S-transferase domain-containing protein 790818..791414 Shewanella sp. W3-18-1 4661463 YP_962118.1 CDS Sputw3181_0713 NC_008750.1 791426 791842 R KEGG: shm:Shewmr7_0605 hypothetical protein; hypothetical protein complement(791426..791842) Shewanella sp. W3-18-1 4661467 YP_962119.1 CDS Sputw3181_0714 NC_008750.1 792058 793065 D PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO0744 iron(III) ABC transporter, periplasmic iron(III)-binding protein; extracellular solute-binding protein 792058..793065 Shewanella sp. W3-18-1 4661461 YP_962120.1 CDS Sputw3181_0715 NC_008750.1 793143 794777 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO0743 iron(III) ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 793143..794777 Shewanella sp. W3-18-1 4661459 YP_962121.1 CDS Sputw3181_0716 NC_008750.1 794774 795823 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_0608 ABC transporter related; ABC transporter-like protein 794774..795823 Shewanella sp. W3-18-1 4661458 YP_962122.1 CDS Sputw3181_0717 NC_008750.1 795999 797711 D KEGG: shm:Shewmr7_0609 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 795999..797711 Shewanella sp. W3-18-1 4661452 YP_962123.1 CDS Sputw3181_0718 NC_008750.1 797958 798893 D TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: son:SO0740 melanin biosynthesis protein TyrA, putative; Dyp-type peroxidase family protein 797958..798893 Shewanella sp. W3-18-1 4661451 YP_962124.1 CDS Sputw3181_0719 NC_008750.1 798966 799874 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0611 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(798966..799874) Shewanella sp. W3-18-1 4661442 YP_962125.1 CDS Sputw3181_0720 NC_008750.1 799981 800613 D PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: shm:Shewmr7_0612 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 799981..800613 Shewanella sp. W3-18-1 4661431 YP_962126.1 CDS Sputw3181_0721 NC_008750.1 800745 801215 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(800745..801215) Shewanella sp. W3-18-1 4661437 YP_962127.1 CDS Sputw3181_0722 NC_008750.1 801499 802434 D oxidizes malate to oxaloacetate; malate dehydrogenase 801499..802434 Shewanella sp. W3-18-1 4661417 YP_962128.1 CDS Sputw3181_0723 NC_008750.1 802526 802924 R PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: son:SO0771 hypothetical protein; putative thiol-disulfide oxidoreductase DCC complement(802526..802924) Shewanella sp. W3-18-1 4661398 YP_962129.1 CDS Sputw3181_0724 NC_008750.1 803192 803911 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO0772 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 803192..803911 Shewanella sp. W3-18-1 4661378 YP_962130.1 CDS Sputw3181_0725 NC_008750.1 803971 804630 R PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: she:Shewmr4_3336 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(803971..804630) Shewanella sp. W3-18-1 4661391 YP_962131.1 CDS Sputw3181_0726 NC_008750.1 804936 805238 R PFAM: protein of unknown function DUF710; KEGG: son:SO0775 hypothetical protein; hypothetical protein complement(804936..805238) Shewanella sp. W3-18-1 4661406 YP_962132.1 CDS Sputw3181_0727 NC_008750.1 805406 806041 D TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: shm:Shewmr7_0619 YecA family protein; yecA family protein 805406..806041 Shewanella sp. W3-18-1 4661400 YP_962133.1 CDS Sputw3181_0728 NC_008750.1 806165 807403 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: she:Shewmr4_3333 2-polyprenyl-6-methoxyphenol 4-hydroxylase; 2-polyprenyl-6-methoxyphenol 4-hydroxylase 806165..807403 Shewanella sp. W3-18-1 4661389 YP_962134.1 CDS Sputw3181_0729 NC_008750.1 807446 808669 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0778 oxidoreductase, FAD-binding, UbiH/Coq6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 807446..808669 Shewanella sp. W3-18-1 4661383 YP_962135.1 CDS gcvT NC_008750.1 808924 810018 D catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 808924..810018 Shewanella sp. W3-18-1 4661347 YP_962136.1 CDS Sputw3181_0731 NC_008750.1 810044 810433 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 810044..810433 Shewanella sp. W3-18-1 4661334 YP_962137.1 CDS Sputw3181_0732 NC_008750.1 810556 813444 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 810556..813444 Shewanella sp. W3-18-1 4661324 YP_962138.1 CDS Sputw3181_0733 NC_008750.1 813850 814278 R hypothetical protein complement(813850..814278) Shewanella sp. W3-18-1 4661308 YP_962139.1 CDS Sputw3181_0734 NC_008750.1 814768 816378 R KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase complement(814768..816378) Shewanella sp. W3-18-1 4661278 YP_962140.1 CDS Sputw3181_0735 NC_008750.1 816654 818789 R KEGG: san:gbs1341 hypothetical protein; hypothetical protein complement(816654..818789) Shewanella sp. W3-18-1 4661277 YP_962141.1 CDS Sputw3181_0736 NC_008750.1 818779 821097 R KEGG: san:gbs1342 hypothetical protein; hypothetical protein complement(818779..821097) Shewanella sp. W3-18-1 4661257 YP_962142.1 CDS Sputw3181_0737 NC_008750.1 821148 822080 R PFAM: NERD domain protein; KEGG: shm:Shewmr7_0627 hypothetical protein; NERD domain-containing protein complement(821148..822080) Shewanella sp. W3-18-1 4661221 YP_962143.1 CDS Sputw3181_0738 NC_008750.1 822550 823080 R KEGG: pen:PSEEN2314 hypothetical protein; hypothetical protein complement(822550..823080) Shewanella sp. W3-18-1 4661259 YP_962144.1 CDS Sputw3181_0739 NC_008750.1 823481 823726 R KEGG: son:SO0788 hypothetical protein; hypothetical protein complement(823481..823726) Shewanella sp. W3-18-1 4661227 YP_962145.1 CDS Sputw3181_0740 NC_008750.1 823991 824392 D KEGG: son:SO0792 hypothetical protein; hypothetical protein 823991..824392 Shewanella sp. W3-18-1 4661255 YP_962146.1 CDS Sputw3181_0741 NC_008750.1 824562 826172 D KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 824562..826172 Shewanella sp. W3-18-1 4661251 YP_962147.1 CDS Sputw3181_0742 NC_008750.1 826169 826369 R KEGG: cps:CPS_2516 hypothetical protein; hypothetical protein complement(826169..826369) Shewanella sp. W3-18-1 4661247 YP_962148.1 CDS Sputw3181_0743 NC_008750.1 826569 828233 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: shm:Shewmr7_3199 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(826569..828233) Shewanella sp. W3-18-1 4661233 YP_962149.1 CDS Sputw3181_0744 NC_008750.1 828526 830712 D TIGRFAM: uncharacterized domain; PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: shm:Shewmr7_0632 uncharacterized domain; hypothetical protein 828526..830712 Shewanella sp. W3-18-1 4661235 YP_962150.1 CDS Sputw3181_0745 NC_008750.1 830830 831399 D KEGG: eba:ebA616 hypothetical protein; hypothetical protein 830830..831399 Shewanella sp. W3-18-1 4661238 YP_962151.1 CDS Sputw3181_0746 NC_008750.1 831420 831764 D KEGG: eba:ebB16 hypothetical protein; hypothetical protein 831420..831764 Shewanella sp. W3-18-1 4659090 YP_962152.1 CDS Sputw3181_0747 NC_008750.1 831801 832049 D hypothetical protein 831801..832049 Shewanella sp. W3-18-1 4661220 YP_962153.1 CDS Sputw3181_0748 NC_008750.1 832030 832308 D KEGG: rpa:RPA2335 hypothetical protein; hypothetical protein 832030..832308 Shewanella sp. W3-18-1 4661218 YP_962154.1 CDS Sputw3181_0749 NC_008750.1 832326 832664 D KEGG: rpa:RPA2334 hypothetical protein; hypothetical protein 832326..832664 Shewanella sp. W3-18-1 4661215 YP_962155.1 CDS Sputw3181_0750 NC_008750.1 832651 834756 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: eba:ebA609 putative cation transport ATPase; heavy metal translocating P-type ATPase 832651..834756 Shewanella sp. W3-18-1 4661139 YP_962156.1 CDS Sputw3181_0751 NC_008750.1 834839 835300 R KEGG: she:Shewmr4_3319 hypothetical protein; hypothetical protein complement(834839..835300) Shewanella sp. W3-18-1 4661112 YP_962157.1 CDS Sputw3181_0752 NC_008750.1 835300 837462 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_3318 TonB-dependent receptor; TonB-dependent receptor complement(835300..837462) Shewanella sp. W3-18-1 4661199 YP_962158.1 CDS Sputw3181_0753 NC_008750.1 837615 838097 D PFAM: protein of unknown function DUF985; KEGG: shm:Shewmr7_0636 protein of unknown function DUF985; hypothetical protein 837615..838097 Shewanella sp. W3-18-1 4660756 YP_962159.1 CDS Sputw3181_0754 NC_008750.1 838260 839039 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 838260..839039 Shewanella sp. W3-18-1 4660753 YP_962160.1 CDS Sputw3181_0755 NC_008750.1 839139 840056 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: shm:Shewmr7_0637 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein complement(839139..840056) Shewanella sp. W3-18-1 4660748 YP_962161.1 CDS Sputw3181_0756 NC_008750.1 840342 841802 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: shm:Shewmr7_0638 MATE efflux family protein; MATE efflux family protein 840342..841802 Shewanella sp. W3-18-1 4660408 YP_962162.1 CDS Sputw3181_0757 NC_008750.1 841830 842435 R KEGG: son:SO0804 hypothetical protein; hypothetical protein complement(841830..842435) Shewanella sp. W3-18-1 4660743 YP_962163.1 CDS Sputw3181_0758 NC_008750.1 842535 842963 R PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_0640 CBS domain containing membrane protein; hypothetical protein complement(842535..842963) Shewanella sp. W3-18-1 4660402 YP_962164.1 CDS Sputw3181_0759 NC_008750.1 843234 844997 D PFAM: Alkaline phosphatase; KEGG: she:Shewmr4_3312 twin-arginine translocation pathway signal; alkaline phosphatase 843234..844997 Shewanella sp. W3-18-1 4660707 YP_962165.1 CDS Sputw3181_0760 NC_008750.1 845285 845851 D KEGG: shm:Shewmr7_0642 hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase 845285..845851 Shewanella sp. W3-18-1 4660701 YP_962166.1 CDS Sputw3181_0761 NC_008750.1 846180 846482 D KEGG: she:Shewmr4_3309 hypothetical protein; hypothetical protein 846180..846482 Shewanella sp. W3-18-1 4660699 YP_962167.1 CDS Sputw3181_0762 NC_008750.1 846884 848074 D KEGG: sdn:Sden_0953 hypothetical protein; hypothetical protein 846884..848074 Shewanella sp. W3-18-1 4660672 YP_962168.1 CDS Sputw3181_0763 NC_008750.1 848169 848645 R TIGRFAM: Azurin; PFAM: blue (type 1) copper domain protein; KEGG: shm:Shewmr7_0645 blue (type 1) copper domain protein; azurin complement(848169..848645) Shewanella sp. W3-18-1 4660655 YP_962169.1 CDS Sputw3181_0764 NC_008750.1 848816 849727 R catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase complement(848816..849727) Shewanella sp. W3-18-1 4660391 YP_962170.1 CDS rihA NC_008750.1 849747 850703 R Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 complement(849747..850703) Shewanella sp. W3-18-1 4661875 YP_962171.1 CDS Sputw3181_0766 NC_008750.1 850907 852349 D KEGG: son:SO0813 hypothetical protein; hypothetical protein 850907..852349 Shewanella sp. W3-18-1 4660625 YP_962172.1 CDS Sputw3181_0767 NC_008750.1 852810 854771 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_0651 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 852810..854771 Shewanella sp. W3-18-1 4660598 YP_962173.1 CDS Sputw3181_0768 NC_008750.1 854844 855839 R KEGG: sfr:Sfri_1031 hypothetical protein; hypothetical protein complement(854844..855839) Shewanella sp. W3-18-1 4660588 YP_962174.1 CDS Sputw3181_0769 NC_008750.1 856534 857262 D PFAM: HDOD; KEGG: shm:Shewmr7_0652 putative signal transduction protein; putative signal transduction protein 856534..857262 Shewanella sp. W3-18-1 4660369 YP_962175.1 CDS Sputw3181_0770 NC_008750.1 857338 858243 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0653 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(857338..858243) Shewanella sp. W3-18-1 4660543 YP_962176.1 CDS Sputw3181_0771 NC_008750.1 858444 860714 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 858444..860714 Shewanella sp. W3-18-1 4660354 YP_962177.1 CDS Sputw3181_0772 NC_008750.1 861069 862319 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: sugar-specific permease, EIIA 1 domain; secretion protein HlyD family protein; KEGG: son:SO0820 HlyD family secretion protein; RND family efflux transporter MFP subunit 861069..862319 Shewanella sp. W3-18-1 4660524 YP_962178.1 CDS Sputw3181_0773 NC_008750.1 862322 864265 D PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: son:SO0821 ABC transporter, ATP-binding/permease protein; ABC transporter-like protein 862322..864265 Shewanella sp. W3-18-1 4660512 YP_962179.1 CDS Sputw3181_0774 NC_008750.1 864273 865688 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: son:SO0822 outer membrane efflux family protein; RND efflux system outer membrane lipoprotein 864273..865688 Shewanella sp. W3-18-1 4660313 YP_962180.1 CDS Sputw3181_0775 NC_008750.1 865846 866934 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dvu:DVU0416 GGDEF domain protein; diguanylate cyclase 865846..866934 Shewanella sp. W3-18-1 4660502 YP_962181.1 CDS Sputw3181_0776 NC_008750.1 866956 868092 R PFAM: peptidase M50; KEGG: shm:Shewmr7_0672 peptidase M50; peptidase M50 complement(866956..868092) Shewanella sp. W3-18-1 4660499 YP_962182.1 CDS Sputw3181_0777 NC_008750.1 868340 868717 R KEGG: she:Shewmr4_3274 hypothetical protein; hypothetical protein complement(868340..868717) Shewanella sp. W3-18-1 4660496 YP_962183.1 CDS Sputw3181_0778 NC_008750.1 868886 870574 R PFAM: protein of unknown function DUF342; KEGG: she:Shewmr4_3273 protein of unknown function DUF342; hypothetical protein complement(868886..870574) Shewanella sp. W3-18-1 4661802 YP_962184.1 CDS Sputw3181_0779 NC_008750.1 871002 872045 R PFAM: methyltransferase small; Methyltransferase small, N-terminal domain protein; KEGG: she:Shewmr4_0687 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase complement(871002..872045) Shewanella sp. W3-18-1 4660475 YP_962185.1 CDS Sputw3181_0780 NC_008750.1 872197 873519 R PFAM: Alkaline phosphatase; KEGG: shm:Shewmr7_3334 alkaline phosphatase; alkaline phosphatase complement(872197..873519) Shewanella sp. W3-18-1 4660444 YP_962186.1 CDS Sputw3181_0781 NC_008750.1 873606 874559 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(873606..874559) Shewanella sp. W3-18-1 4660443 YP_962187.1 CDS Sputw3181_0782 NC_008750.1 874624 875355 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(874624..875355) Shewanella sp. W3-18-1 4660088 YP_962188.1 CDS Sputw3181_0783 NC_008750.1 875364 876143 R PFAM: Endonuclease I; KEGG: she:Shewmr4_0691 deoxyribonuclease I; deoxyribonuclease I complement(875364..876143) Shewanella sp. W3-18-1 4660086 YP_962189.1 CDS Sputw3181_0784 NC_008750.1 876281 876940 R PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: son:SO0834 sprT protein, putative; hypothetical protein complement(876281..876940) Shewanella sp. W3-18-1 4659837 YP_962190.1 CDS Sputw3181_0785 NC_008750.1 877112 878266 R KEGG: she:Shewmr4_0693 hypothetical protein; hypothetical protein complement(877112..878266) Shewanella sp. W3-18-1 4660067 YP_962191.1 CDS Sputw3181_0786 NC_008750.1 878634 879446 D PFAM: penicillin-binding protein, transpeptidase; KEGG: son:SO0837 beta-lactamase, putative; beta-lactamase 878634..879446 Shewanella sp. W3-18-1 4659829 YP_962192.1 CDS Sputw3181_0787 NC_008750.1 879527 880438 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_0695 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(879527..880438) Shewanella sp. W3-18-1 4660045 YP_962193.1 CDS Sputw3181_0788 NC_008750.1 880560 885113 D PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase; carbamoyl-phosphate synthase subunit L 880560..885113 Shewanella sp. W3-18-1 4660014 YP_962194.1 CDS Sputw3181_0789 NC_008750.1 885680 887773 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 885680..887773 Shewanella sp. W3-18-1 4659990 YP_962195.1 CDS Sputw3181_0790 NC_008750.1 887888 888775 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_3323 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(887888..888775) Shewanella sp. W3-18-1 4661368 YP_962196.1 CDS Sputw3181_0791 NC_008750.1 888869 889021 D KEGG: shm:Shewmr7_3322 hypothetical protein; hypothetical protein 888869..889021 Shewanella sp. W3-18-1 4659904 YP_962197.1 CDS Sputw3181_0792 NC_008750.1 889220 889651 R PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: shm:Shewmr7_3321 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit complement(889220..889651) Shewanella sp. W3-18-1 4659897 YP_962198.1 CDS napH NC_008750.1 889648 890619 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component complement(889648..890619) Shewanella sp. W3-18-1 4659896 YP_962199.1 CDS napG NC_008750.1 890616 891350 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component complement(890616..891350) Shewanella sp. W3-18-1 4659890 YP_962200.1 CDS Sputw3181_0795 NC_008750.1 891404 893884 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(891404..893884) Shewanella sp. W3-18-1 4659879 YP_962201.1 CDS Sputw3181_0796 NC_008750.1 893881 894150 R PFAM: NapD family protein; KEGG: son:SO0849 napD protein; NapD family protein complement(893881..894150) Shewanella sp. W3-18-1 4659867 YP_962202.1 CDS Sputw3181_0797 NC_008750.1 894473 895684 R KEGG: she:Shewmr4_0711 hypothetical protein; hypothetical protein complement(894473..895684) Shewanella sp. W3-18-1 4659864 YP_962203.1 CDS Sputw3181_0798 NC_008750.1 895681 898317 R PFAM: protein of unknown function DUF214; KEGG: son:SO0856 putative ABC transport system permease protein; hypothetical protein complement(895681..898317) Shewanella sp. W3-18-1 4659851 YP_962204.1 CDS Sputw3181_0799 NC_008750.1 898314 898985 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3309 ABC transporter related; ABC transporter-like protein complement(898314..898985) Shewanella sp. W3-18-1 4659431 YP_962205.1 CDS Sputw3181_0800 NC_008750.1 899727 901085 D TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: she:Shewmr4_0714 amino acid carrier protein; amino acid carrier protein 899727..901085 Shewanella sp. W3-18-1 4659389 YP_962206.1 CDS Sputw3181_0801 NC_008750.1 901218 906533 D KEGG: shm:Shewmr7_3307 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 901218..906533 Shewanella sp. W3-18-1 4659365 YP_962207.1 CDS Sputw3181_0802 NC_008750.1 906688 907704 D PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: shm:Shewmr7_3306 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase 906688..907704 Shewanella sp. W3-18-1 4659112 YP_962208.1 CDS Sputw3181_0803 NC_008750.1 907767 908723 R PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: son:SO0861 hypothetical protein; glycine cleavage T protein (aminomethyl transferase) complement(907767..908723) Shewanella sp. W3-18-1 4659328 YP_962209.1 CDS Sputw3181_0804 NC_008750.1 908874 910103 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(908874..910103) Shewanella sp. W3-18-1 4659298 YP_962210.1 CDS Sputw3181_0805 NC_008750.1 910258 910866 D KEGG: she:Shewmr4_0719 hypothetical protein; hypothetical protein 910258..910866 Shewanella sp. W3-18-1 4659095 YP_962211.1 CDS Sputw3181_0806 NC_008750.1 911296 911925 D PFAM: regulatory protein, LuxR; KEGG: she:Shewmr4_0720 transcriptional regulator, LuxR family; response regulator receiver protein 911296..911925 Shewanella sp. W3-18-1 4661216 YP_962212.1 CDS Sputw3181_0807 NC_008750.1 912094 913584 R PFAM: Curlin associated repeat protein; KEGG: she:Shewmr4_0721 curlin associated repeat protein; curlin-associated protein complement(912094..913584) Shewanella sp. W3-18-1 4659194 YP_962213.1 CDS Sputw3181_0808 NC_008750.1 913599 914018 R PFAM: Curlin associated repeat protein; KEGG: son:SO0866 minor curlin subunit CsgB, putative; curlin-associated protein complement(913599..914018) Shewanella sp. W3-18-1 4658872 YP_962214.1 CDS Sputw3181_0809 NC_008750.1 914341 914868 R KEGG: she:Shewmr4_0724 hypothetical protein; hypothetical protein complement(914341..914868) Shewanella sp. W3-18-1 4658866 YP_962215.1 CDS panC NC_008750.1 915080 915925 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(915080..915925) Shewanella sp. W3-18-1 4658844 YP_962216.1 CDS panB NC_008750.1 915979 916773 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(915979..916773) Shewanella sp. W3-18-1 4658807 YP_962217.1 CDS Sputw3181_0812 NC_008750.1 916837 917319 R KEGG: son:SO0871 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(916837..917319) Shewanella sp. W3-18-1 4658800 YP_962218.1 CDS Sputw3181_0813 NC_008750.1 917319 918803 R TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: she:Shewmr4_0728 poly(A) polymerase; poly(A) polymerase complement(917319..918803) Shewanella sp. W3-18-1 4658775 YP_962219.1 CDS Sputw3181_0814 NC_008750.1 918919 919818 R PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: shm:Shewmr7_3293 glutamyl-tRNA synthetase, class Ic; glutamate--tRNA ligase complement(918919..919818) Shewanella sp. W3-18-1 4658773 YP_962220.1 CDS Sputw3181_0815 NC_008750.1 919995 920438 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: shm:Shewmr7_3292 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator complement(919995..920438) Shewanella sp. W3-18-1 4658762 YP_962221.1 CDS Sputw3181_0816 NC_008750.1 920602 921306 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(920602..921306) Shewanella sp. W3-18-1 4658744 YP_962222.1 CDS Sputw3181_0817 NC_008750.1 921494 922786 D catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 921494..922786 Shewanella sp. W3-18-1 4658736 YP_962223.1 CDS Sputw3181_0818 NC_008750.1 922922 923464 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0877 acetyltransferase, GNAT family; N-acetyltransferase GCN5 922922..923464 Shewanella sp. W3-18-1 4661443 YP_962224.1 CDS Sputw3181_0819 NC_008750.1 923991 924878 R PFAM: phosphoribulokinase/uridine kinase; KEGG: shm:Shewmr7_3288 phosphoribulokinase; phosphoribulokinase complement(923991..924878) Shewanella sp. W3-18-1 4658721 YP_962225.1 CDS Sputw3181_0820 NC_008750.1 924969 925214 R KEGG: shm:Shewmr7_3287 protein of unknown function UPF0270; hypothetical protein complement(924969..925214) Shewanella sp. W3-18-1 4661175 YP_962226.1 CDS Sputw3181_0821 NC_008750.1 925198 926226 R PFAM: alpha/beta hydrolase fold; KEGG: son:SO0880 hypothetical protein; alpha/beta hydrolase fold domain-containing protein complement(925198..926226) Shewanella sp. W3-18-1 4658702 YP_962227.1 CDS Sputw3181_0822 NC_008750.1 926336 926842 D KEGG: son:SO0881 hypothetical protein; hypothetical protein 926336..926842 Shewanella sp. W3-18-1 4661462 YP_962228.1 CDS Sputw3181_0823 NC_008750.1 926854 928521 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: son:SO0882 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 926854..928521 Shewanella sp. W3-18-1 4658693 YP_962229.1 CDS Sputw3181_0824 NC_008750.1 928523 928933 D PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: son:SO0883 hypothetical protein; glutathione-dependent formaldehyde-activating protein 928523..928933 Shewanella sp. W3-18-1 4658685 YP_962230.1 CDS Sputw3181_0825 NC_008750.1 928971 929465 R KEGG: shm:Shewmr7_3282 hypothetical protein; hypothetical protein complement(928971..929465) Shewanella sp. W3-18-1 4661223 YP_962231.1 CDS Sputw3181_0826 NC_008750.1 929477 931387 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0885 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(929477..931387) Shewanella sp. W3-18-1 4658667 YP_962232.1 CDS Sputw3181_0827 NC_008750.1 931640 931843 D KEGG: sdn:Sden_3177 hypothetical protein; hypothetical protein 931640..931843 Shewanella sp. W3-18-1 4658665 YP_962233.1 CDS Sputw3181_0828 NC_008750.1 932358 932819 D hypothetical protein 932358..932819 Shewanella sp. W3-18-1 4661286 YP_962234.1 CDS Sputw3181_0829 NC_008750.1 933015 933137 D KEGG: son:SO1889 hypothetical protein; hypothetical protein 933015..933137 Shewanella sp. W3-18-1 4658661 YP_962235.1 CDS Sputw3181_0831 NC_008750.1 933316 933939 D KEGG: she:Shewmr4_2555 protein of unknown function DUF1568; hypothetical protein 933316..933939 Shewanella sp. W3-18-1 4659065 YP_962236.1 CDS Sputw3181_0832 NC_008750.1 934279 934809 D KEGG: son:SO2169.1 hypothetical protein; hypothetical protein 934279..934809 Shewanella sp. W3-18-1 4661618 YP_962237.1 CDS Sputw3181_0833 NC_008750.1 935514 936401 D PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: she:Shewmr4_0744 pirin domain protein domain protein; pirin domain-containing protein 935514..936401 Shewanella sp. W3-18-1 4657738 YP_962238.1 CDS Sputw3181_0834 NC_008750.1 936740 938116 D exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 936740..938116 Shewanella sp. W3-18-1 4658184 YP_962239.1 CDS Sputw3181_0835 NC_008750.1 938394 939962 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: pen:PSEEN3931 aerotaxis receptor; methyl-accepting chemotaxis sensory transducer 938394..939962 Shewanella sp. W3-18-1 4657732 YP_962240.1 CDS Sputw3181_0836 NC_008750.1 940065 941717 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: she:Shewmr4_3129 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(940065..941717) Shewanella sp. W3-18-1 4658163 YP_962241.1 CDS Sputw3181_0837 NC_008750.1 942151 943191 D KEGG: shm:Shewmr7_0839 hypothetical protein; hypothetical protein 942151..943191 Shewanella sp. W3-18-1 4658160 YP_962242.1 CDS Sputw3181_0838 NC_008750.1 943386 945317 D in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 943386..945317 Shewanella sp. W3-18-1 4657728 YP_962243.1 CDS Sputw3181_0839 NC_008750.1 945314 947065 D in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 945314..947065 Shewanella sp. W3-18-1 4657726 YP_962244.1 CDS Sputw3181_0840 NC_008750.1 947113 947706 D TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: son:SO3778 adenylate cyclase CyaB, putative; putative adenylyl cyclase CyaB 947113..947706 Shewanella sp. W3-18-1 4657724 YP_962245.1 CDS Sputw3181_0841 NC_008750.1 947816 947992 R KEGG: son:SO3777 hypothetical protein; hypothetical protein complement(947816..947992) Shewanella sp. W3-18-1 4658112 YP_962246.1 CDS Sputw3181_0842 NC_008750.1 948090 948824 R PFAM: protein of unknown function DUF599; KEGG: son:SO3776 hypothetical protein; hypothetical protein complement(948090..948824) Shewanella sp. W3-18-1 4658102 YP_962247.1 CDS Sputw3181_0843 NC_008750.1 949627 949977 R hypothetical protein complement(949627..949977) Shewanella sp. W3-18-1 4658097 YP_962248.1 CDS Sputw3181_0844 NC_008750.1 950014 950511 R hypothetical protein complement(950014..950511) Shewanella sp. W3-18-1 4658088 YP_962249.1 CDS Sputw3181_0845 NC_008750.1 951469 954663 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(951469..954663) Shewanella sp. W3-18-1 4658087 YP_962250.1 CDS Sputw3181_0846 NC_008750.1 954912 955460 R PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: shm:Shewmr7_0851 SH3 domain protein domain protein; SH3 type 3 domain-containing protein complement(954912..955460) Shewanella sp. W3-18-1 4657713 YP_962251.1 CDS Sputw3181_0847 NC_008750.1 955657 956946 R PFAM: phosphate transporter; KEGG: she:Shewmr4_3120 phosphate transporter; phosphate transporter complement(955657..956946) Shewanella sp. W3-18-1 4658077 YP_962252.1 CDS Sputw3181_0848 NC_008750.1 956972 957652 R PFAM: protein of unknown function DUF47; KEGG: shm:Shewmr7_0853 protein of unknown function DUF47; hypothetical protein complement(956972..957652) Shewanella sp. W3-18-1 4658076 YP_962253.1 CDS Sputw3181_0849 NC_008750.1 957870 959396 D PFAM: adenylate cyclase; KEGG: she:Shewmr4_3118 adenylate cyclase; adenylate cyclase 957870..959396 Shewanella sp. W3-18-1 4657710 YP_962254.1 CDS Sputw3181_0850 NC_008750.1 959472 960293 R PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: son:SO3768 ion transporter; Ion transport 2 domain-containing protein complement(959472..960293) Shewanella sp. W3-18-1 4657709 YP_962255.1 CDS Sputw3181_0851 NC_008750.1 960436 960765 R KEGG: shm:Shewmr7_0856 hypothetical protein; hypothetical protein complement(960436..960765) Shewanella sp. W3-18-1 4658049 YP_962256.1 CDS Sputw3181_0852 NC_008750.1 960887 961540 R KEGG: son:SO3766 hypothetical protein; hypothetical protein complement(960887..961540) Shewanella sp. W3-18-1 4657704 YP_962257.1 CDS Sputw3181_0853 NC_008750.1 961699 962388 R PFAM: PspA/IM30 family protein; KEGG: son:SO3765 hypothetical protein; phage shock protein A, PspA complement(961699..962388) Shewanella sp. W3-18-1 4658016 YP_962258.1 CDS Sputw3181_0854 NC_008750.1 962400 962813 R KEGG: shm:Shewmr7_0859 hypothetical protein; hypothetical protein complement(962400..962813) Shewanella sp. W3-18-1 4658001 YP_962259.1 CDS Sputw3181_0855 NC_008750.1 962892 964616 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(962892..964616) Shewanella sp. W3-18-1 4658000 YP_962260.1 CDS Sputw3181_0856 NC_008750.1 964621 965520 R KEGG: shm:Shewmr7_0861 protein of unknown function DUF350; hypothetical protein complement(964621..965520) Shewanella sp. W3-18-1 4657977 YP_962261.1 CDS Sputw3181_0857 NC_008750.1 965534 966517 R KEGG: she:Shewmr4_3110 hypothetical protein; hypothetical protein complement(965534..966517) Shewanella sp. W3-18-1 4657693 YP_962262.1 CDS Sputw3181_0858 NC_008750.1 966743 969607 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 966743..969607 Shewanella sp. W3-18-1 4657954 YP_962263.1 CDS Sputw3181_0859 NC_008750.1 969684 970655 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: shm:Shewmr7_0864 diguanylate cyclase with GAF sensor; diguanylate cyclase 969684..970655 Shewanella sp. W3-18-1 4658350 YP_962264.1 CDS Sputw3181_0860 NC_008750.1 970738 971697 R PFAM: protein of unknown function DUF897; KEGG: she:Shewmr4_3107 protein of unknown function DUF897; hypothetical protein complement(970738..971697) Shewanella sp. W3-18-1 4658360 YP_962265.1 CDS Sputw3181_0861 NC_008750.1 971761 972831 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3757 rubisco operon transcriptional regulator; LysR family transcriptional regulator 971761..972831 Shewanella sp. W3-18-1 4658375 YP_962266.1 CDS Sputw3181_0862 NC_008750.1 973490 975214 D catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 973490..975214 Shewanella sp. W3-18-1 4658381 YP_962267.1 CDS Sputw3181_0863 NC_008750.1 975217 977235 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: xcb:XC_3531 potassium-transporting ATPase B chain; K+-transporting ATPase subunit B 975217..977235 Shewanella sp. W3-18-1 4658384 YP_962268.1 CDS Sputw3181_0864 NC_008750.1 977245 977571 D PFAM: K+ transporting ATPase, KdpC subunit; KEGG: tte:TTE2010 K+-transporting ATPase, c chain; K+ transporting ATPase, KdpC subunit 977245..977571 Shewanella sp. W3-18-1 4658398 YP_962269.1 CDS Sputw3181_0865 NC_008750.1 977614 977844 D PFAM: K+ transporting ATPase, KdpC subunit; KEGG: aci:ACIAD2976 potassium-transporting ATPase C chain; K+ transporting ATPase, KdpC subunit 977614..977844 Shewanella sp. W3-18-1 4658397 YP_962270.1 CDS Sputw3181_0866 NC_008750.1 977879 978649 D KEGG: pfo:Pfl_3155 hypothetical protein; hypothetical protein 977879..978649 Shewanella sp. W3-18-1 4658402 YP_962271.1 CDS Sputw3181_0867 NC_008750.1 978652 981312 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Osmosensitive K+ channel His kinase sensor; KEGG: xom:XOO_3621 two-component system sensor protein; osmosensitive K+ channel signal transduction histidine kinase 978652..981312 Shewanella sp. W3-18-1 4658414 YP_962272.1 CDS Sputw3181_0868 NC_008750.1 981362 982045 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psb:Psyr_2051 response regulator receiver:transcriptional regulatory protein, C-terminal; two component transcriptional regulator 981362..982045 Shewanella sp. W3-18-1 4658427 YP_962273.1 CDS Sputw3181_0869 NC_008750.1 982073 983290 R PFAM: AFG1-family ATPase; KEGG: she:Shewmr4_3102 AFG1-family ATPase; AFG1 family ATPase complement(982073..983290) Shewanella sp. W3-18-1 4658462 YP_962274.1 CDS Sputw3181_0870 NC_008750.1 983534 984361 D KEGG: shm:Shewmr7_0880 hypothetical protein; hypothetical protein 983534..984361 Shewanella sp. W3-18-1 4658463 YP_962275.1 CDS Sputw3181_0871 NC_008750.1 984424 985338 R PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: son:SO3748 LysM domain protein; ErfK/YbiS/YcfS/YnhG family protein complement(984424..985338) Shewanella sp. W3-18-1 4658363 YP_962276.1 CDS Sputw3181_0872 NC_008750.1 985510 987063 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(985510..987063) Shewanella sp. W3-18-1 4658412 YP_962277.1 CDS Sputw3181_0873 NC_008750.1 987290 989575 R KEGG: shm:Shewmr7_0883 putative nitric oxide reductase (subunit B) transmembrane protein; putative nitric oxide reductase (subunit B) transmembrane protein complement(987290..989575) Shewanella sp. W3-18-1 4658415 YP_962278.1 CDS Sputw3181_0874 NC_008750.1 990187 991911 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 990187..991911 Shewanella sp. W3-18-1 4658343 YP_962279.1 CDS Sputw3181_0875 NC_008750.1 991978 992850 R TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: son:SO3746 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase complement(991978..992850) Shewanella sp. W3-18-1 4657798 YP_962280.1 CDS Sputw3181_0876 NC_008750.1 993008 994438 D catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 993008..994438 Shewanella sp. W3-18-1 4657803 YP_962281.1 CDS Sputw3181_0877 NC_008750.1 994435 995262 D KEGG: son:SO3744 hypothetical protein; hypothetical protein 994435..995262 Shewanella sp. W3-18-1 4657819 YP_962282.1 CDS Sputw3181_0878 NC_008750.1 995415 995894 D PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_0888 transcriptional regulator, TetR family; TetR family transcriptional regulator 995415..995894 Shewanella sp. W3-18-1 4657824 YP_962283.1 CDS pntB NC_008750.1 996002 997486 R catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase complement(996002..997486) Shewanella sp. W3-18-1 4657867 YP_962284.1 CDS pntA NC_008750.1 997498 999024 R forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha complement(997498..999024) Shewanella sp. W3-18-1 4657875 YP_962285.1 CDS Sputw3181_0881 NC_008750.1 999445 1001244 D TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: she:Shewmr4_3080 sulfite reductase (NADPH) flavoprotein, alpha chain; sulfite reductase (NADPH) flavoprotein, alpha chain 999445..1001244 Shewanella sp. W3-18-1 4657895 YP_962286.1 CDS Sputw3181_0882 NC_008750.1 1001344 1003041 D hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 1001344..1003041 Shewanella sp. W3-18-1 4657907 YP_962287.1 CDS Sputw3181_0883 NC_008750.1 1003034 1003816 D catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 1003034..1003816 Shewanella sp. W3-18-1 4657910 YP_962288.1 CDS mtgA NC_008750.1 1004397 1005182 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 1004397..1005182 Shewanella sp. W3-18-1 4657938 YP_962289.1 CDS Sputw3181_0885 NC_008750.1 1005438 1007174 D KEGG: son:SO3733 hypothetical protein; hypothetical protein 1005438..1007174 Shewanella sp. W3-18-1 4657975 YP_962290.1 CDS Sputw3181_0886 NC_008750.1 1007291 1007476 R KEGG: shm:Shewmr7_3211 hypothetical protein; hypothetical protein complement(1007291..1007476) Shewanella sp. W3-18-1 4658061 YP_962291.1 CDS Sputw3181_0887 NC_008750.1 1007561 1008982 R KEGG: son:SO0975 hypothetical protein; hypothetical protein complement(1007561..1008982) Shewanella sp. W3-18-1 4658085 YP_962292.1 CDS Sputw3181_0888 NC_008750.1 1009210 1009635 R PFAM: OsmC family protein; KEGG: shm:Shewmr7_3209 OsmC family protein; OsmC family protein complement(1009210..1009635) Shewanella sp. W3-18-1 4658115 YP_962293.1 CDS Sputw3181_0889 NC_008750.1 1009770 1010276 D PFAM: regulatory protein, MarR; KEGG: she:Shewmr4_0815 transcriptional regulator, MarR family; MarR family transcriptional regulator 1009770..1010276 Shewanella sp. W3-18-1 4658185 YP_962294.1 CDS Sputw3181_0890 NC_008750.1 1010382 1011557 D PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_3207 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1010382..1011557 Shewanella sp. W3-18-1 4657749 YP_962295.1 CDS rumB NC_008750.1 1011634 1012803 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 1011634..1012803 Shewanella sp. W3-18-1 4658264 YP_962296.1 CDS Sputw3181_0892 NC_008750.1 1012932 1014083 D TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: she:Shewmr4_0823 chromate transporter, chromate ion transporter (CHR) family; chromate transporter 1012932..1014083 Shewanella sp. W3-18-1 4657753 YP_962297.1 CDS Sputw3181_0893 NC_008750.1 1014219 1015883 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: shm:Shewmr7_3199 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1014219..1015883 Shewanella sp. W3-18-1 4658281 YP_962298.1 CDS Sputw3181_0894 NC_008750.1 1015959 1020233 R TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: shm:Shewmr7_3198 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha complement(1015959..1020233) Shewanella sp. W3-18-1 4658293 YP_962299.1 CDS Sputw3181_0895 NC_008750.1 1020770 1021828 D TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: shm:Shewmr7_3197 peptide chain release factor 2; peptide chain release factor 2 1020770..1021828 Shewanella sp. W3-18-1 4658455 YP_962300.1 CDS lysS NC_008750.1 1021858 1023360 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1021858..1023360 Shewanella sp. W3-18-1 4658429 YP_962301.1 CDS Sputw3181_0897 NC_008750.1 1023471 1023710 R KEGG: son:SO0994 hypothetical protein; hypothetical protein complement(1023471..1023710) Shewanella sp. W3-18-1 4658340 YP_962302.1 CDS pbpG NC_008750.1 1024272 1025240 D specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 1024272..1025240 Shewanella sp. W3-18-1 4661332 YP_962303.1 CDS Sputw3181_0899 NC_008750.1 1025295 1026860 R PFAM: peptidase S41; KEGG: she:Shewmr4_3075 hypothetical protein; peptidase S41 complement(1025295..1026860) Shewanella sp. W3-18-1 4657771 YP_962304.1 CDS Sputw3181_0900 NC_008750.1 1027102 1027983 R PFAM: phospholipase A1; KEGG: shm:Shewmr7_0898 phospholipase A(1); phospholipase A(1) complement(1027102..1027983) Shewanella sp. W3-18-1 4658345 YP_962305.1 CDS Sputw3181_0901 NC_008750.1 1028422 1029255 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: shm:Shewmr7_0899 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 1028422..1029255 Shewanella sp. W3-18-1 4658418 YP_962306.1 CDS Sputw3181_0902 NC_008750.1 1029321 1030229 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1029321..1030229 Shewanella sp. W3-18-1 4658383 YP_962307.1 CDS cysN NC_008750.1 1030312 1031754 D may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 1030312..1031754 Shewanella sp. W3-18-1 4658347 YP_962308.1 CDS Sputw3181_0904 NC_008750.1 1031758 1033482 D PFAM: Citrate transporter; TrkA-C domain protein; KEGG: shm:Shewmr7_0902 TrkA-C domain protein; TrkA domain-containing protein 1031758..1033482 Shewanella sp. W3-18-1 4658365 YP_962309.1 CDS Sputw3181_0905 NC_008750.1 1033547 1034164 D converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 1033547..1034164 Shewanella sp. W3-18-1 4658558 YP_962310.1 CDS Sputw3181_0906 NC_008750.1 1034222 1035061 R KEGG: shm:Shewmr7_0904 hypothetical protein; hypothetical protein complement(1034222..1035061) Shewanella sp. W3-18-1 4658956 YP_962311.1 CDS Sputw3181_0907 NC_008750.1 1035530 1036051 D KEGG: shm:Shewmr7_0906 protoporphyrinogen oxidase; protoporphyrinogen oxidase 1035530..1036051 Shewanella sp. W3-18-1 4658968 YP_962312.1 CDS Sputw3181_0908 NC_008750.1 1036085 1036630 D KEGG: son:SO3719 hypothetical protein; hypothetical protein 1036085..1036630 Shewanella sp. W3-18-1 4658972 YP_962313.1 CDS Sputw3181_0909 NC_008750.1 1036679 1037440 R PFAM: DSBA oxidoreductase; KEGG: shm:Shewmr7_0909 DsbA oxidoreductase; DSBA oxidoreductase complement(1036679..1037440) Shewanella sp. W3-18-1 4658981 YP_962314.1 CDS Sputw3181_0910 NC_008750.1 1037744 1038388 R PFAM: heat shock protein DnaJ domain protein; KEGG: shm:Shewmr7_0910 heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein complement(1037744..1038388) Shewanella sp. W3-18-1 4659004 YP_962315.1 CDS Sputw3181_0911 NC_008750.1 1038700 1039353 R catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase complement(1038700..1039353) Shewanella sp. W3-18-1 4659039 YP_962316.1 CDS Sputw3181_0912 NC_008750.1 1039485 1039646 D KEGG: son:SO1508 hypothetical protein; hypothetical protein 1039485..1039646 Shewanella sp. W3-18-1 4659085 YP_962317.1 CDS Sputw3181_0913 NC_008750.1 1039706 1040080 D KEGG: rba:RB954 hypothetical protein; hypothetical protein 1039706..1040080 Shewanella sp. W3-18-1 4658967 YP_962318.1 CDS Sputw3181_0914 NC_008750.1 1040253 1040564 D KEGG: pfl:PFL_3339 hypothetical protein; hypothetical protein 1040253..1040564 Shewanella sp. W3-18-1 4658973 YP_962319.1 CDS Sputw3181_0915 NC_008750.1 1040680 1041417 D hypothetical protein 1040680..1041417 Shewanella sp. W3-18-1 4658996 YP_962320.1 CDS Sputw3181_0916 NC_008750.1 1041897 1042622 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_0917 ABC transporter related; ABC transporter-like protein complement(1041897..1042622) Shewanella sp. W3-18-1 4658984 YP_962321.1 CDS Sputw3181_0917 NC_008750.1 1042615 1043295 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1043 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(1042615..1043295) Shewanella sp. W3-18-1 4658658 YP_962322.1 CDS Sputw3181_0918 NC_008750.1 1043303 1044037 R PFAM: extracellular solute-binding protein, family 3; KEGG: shm:Shewmr7_0919 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(1043303..1044037) Shewanella sp. W3-18-1 4658671 YP_962323.1 CDS Sputw3181_0919 NC_008750.1 1044464 1045354 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1046 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1044464..1045354) Shewanella sp. W3-18-1 4658419 YP_962324.1 CDS Sputw3181_0920 NC_008750.1 1045477 1045911 D PFAM: LrgA family protein; KEGG: shm:Shewmr7_0922 LrgA family protein; LrgA family protein 1045477..1045911 Shewanella sp. W3-18-1 4658391 YP_962325.1 CDS Sputw3181_0921 NC_008750.1 1045914 1046633 D PFAM: LrgB family protein; KEGG: shm:Shewmr7_0923 LrgB family protein; LrgB family protein 1045914..1046633 Shewanella sp. W3-18-1 4658716 YP_962326.1 CDS Sputw3181_0922 NC_008750.1 1046781 1047284 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1049 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1046781..1047284 Shewanella sp. W3-18-1 4658389 YP_962327.1 CDS Sputw3181_0923 NC_008750.1 1047397 1048869 D PFAM: carbon starvation protein CstA; KEGG: shm:Shewmr7_0925 carbon starvation protein CstA; carbon starvation protein CstA 1047397..1048869 Shewanella sp. W3-18-1 4658724 YP_962328.1 CDS mdoD NC_008750.1 1049026 1050810 D involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 1049026..1050810 Shewanella sp. W3-18-1 4658726 YP_962329.1 CDS Sputw3181_0925 NC_008750.1 1050883 1051611 R Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase complement(1050883..1051611) Shewanella sp. W3-18-1 4658760 YP_962330.1 CDS Sputw3181_0926 NC_008750.1 1051695 1052537 D PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: vpa:VPA1697 putative transcriptional regulator; helix-turn-helix domain-containing protein 1051695..1052537 Shewanella sp. W3-18-1 4658585 YP_962331.1 CDS Sputw3181_0927 NC_008750.1 1052749 1054218 D PFAM: phosphate transporter; KEGG: shm:Shewmr7_0927 phosphate transporter; phosphate transporter 1052749..1054218 Shewanella sp. W3-18-1 4658790 YP_962332.1 CDS Sputw3181_0928 NC_008750.1 1054428 1055324 R PFAM: protein of unknown function DUF72; KEGG: shm:Shewmr7_0928 protein of unknown function DUF72; hypothetical protein complement(1054428..1055324) Shewanella sp. W3-18-1 4658796 YP_962333.1 CDS Sputw3181_0929 NC_008750.1 1055718 1057145 D KEGG: shm:Shewmr7_0929 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1055718..1057145 Shewanella sp. W3-18-1 4658810 YP_962334.1 CDS Sputw3181_0930 NC_008750.1 1057273 1058967 R PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: son:SO1056 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(1057273..1058967) Shewanella sp. W3-18-1 4658815 YP_962335.1 CDS Sputw3181_0931 NC_008750.1 1058980 1060590 R KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase complement(1058980..1060590) Shewanella sp. W3-18-1 4658843 YP_962336.1 CDS Sputw3181_0932 NC_008750.1 1060687 1060932 R KEGG: shm:Shewmr7_0930 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1060687..1060932) Shewanella sp. W3-18-1 4658616 YP_962337.1 CDS Sputw3181_0933 NC_008750.1 1061142 1063775 R TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: shm:Shewmr7_0932 aminopeptidase N; aminopeptidase N complement(1061142..1063775) Shewanella sp. W3-18-1 4658908 YP_962338.1 CDS Sputw3181_0934 NC_008750.1 1064032 1064637 R TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: shm:Shewmr7_0935 hypothetical protein; membrane lipoprotein lipid attachment site complement(1064032..1064637) Shewanella sp. W3-18-1 4658921 YP_962339.1 CDS Sputw3181_0935 NC_008750.1 1064695 1066098 R PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO1061 TPR domain protein; hypothetical protein complement(1064695..1066098) Shewanella sp. W3-18-1 4658991 YP_962340.1 CDS Sputw3181_0936 NC_008750.1 1066098 1066643 R KEGG: she:Shewmr4_3037 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(1066098..1066643) Shewanella sp. W3-18-1 4659006 YP_962341.1 CDS Sputw3181_0937 NC_008750.1 1066697 1066909 R PFAM: SlyX family protein; KEGG: she:Shewmr4_3036 SlyX family protein; SlyX family protein complement(1066697..1066909) Shewanella sp. W3-18-1 4659067 YP_962342.1 CDS Sputw3181_0938 NC_008750.1 1066919 1067869 R PFAM: WD-40 repeat protein; KEGG: son:SO1064 hypothetical WD domain protein; WD-40 repeat-containing protein complement(1066919..1067869) Shewanella sp. W3-18-1 4659078 YP_962343.1 CDS Sputw3181_0939 NC_008750.1 1068024 1068794 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: she:Shewmr4_3034 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 1068024..1068794 Shewanella sp. W3-18-1 4659561 YP_962344.1 CDS Sputw3181_0940 NC_008750.1 1069273 1071903 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: she:Shewmr4_3033 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1069273..1071903 Shewanella sp. W3-18-1 4659558 YP_962345.1 CDS Sputw3181_0941 NC_008750.1 1072130 1072567 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_0943 uncharacterized domain 1; hypothetical protein 1072130..1072567 Shewanella sp. W3-18-1 4659564 YP_962346.1 CDS Sputw3181_0942 NC_008750.1 1072683 1072910 D KEGG: sdn:Sden_3091 hypothetical protein; hypothetical protein 1072683..1072910 Shewanella sp. W3-18-1 4659568 YP_962347.1 CDS Sputw3181_0943 NC_008750.1 1073144 1074139 D PFAM: dienelactone hydrolase; KEGG: son:SO1006 dienelactone hydrolase family protein; dienelactone hydrolase 1073144..1074139 Shewanella sp. W3-18-1 4659575 YP_962348.1 CDS Sputw3181_0944 NC_008750.1 1074340 1075062 D PFAM: Abortive infection protein; KEGG: pat:Patl_0909 hypothetical protein; abortive infection protein 1074340..1075062 Shewanella sp. W3-18-1 4659578 YP_962349.1 CDS Sputw3181_0945 NC_008750.1 1075096 1075479 D KEGG: son:SO3708 hypothetical protein; hypothetical protein 1075096..1075479 Shewanella sp. W3-18-1 4659586 YP_962350.1 CDS Sputw3181_0946 NC_008750.1 1075489 1076952 R PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rxy:Rxyl_0136 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(1075489..1076952) Shewanella sp. W3-18-1 4659612 YP_962351.1 CDS Sputw3181_0947 NC_008750.1 1077070 1077528 D PFAM: GCN5-related N-acetyltransferase; KEGG: mxa:MXAN_1748 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1077070..1077528 Shewanella sp. W3-18-1 4659614 YP_962352.1 CDS Sputw3181_0948 NC_008750.1 1077807 1079861 R KEGG: she:Shewmr4_0079 MORN variant repeat protein; MORN repeat-containing protein complement(1077807..1079861) Shewanella sp. W3-18-1 4659624 YP_962353.1 CDS Sputw3181_0949 NC_008750.1 1080101 1080913 R KEGG: zmo:ZMO1197 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; glutamate racemase complement(1080101..1080913) Shewanella sp. W3-18-1 4659618 YP_962354.1 CDS Sputw3181_0950 NC_008750.1 1081767 1082039 R hypothetical protein complement(1081767..1082039) Shewanella sp. W3-18-1 4659640 YP_962355.1 CDS Sputw3181_0951 NC_008750.1 1083422 1083715 R KEGG: shm:Shewmr7_3165 hypothetical protein; hypothetical protein complement(1083422..1083715) Shewanella sp. W3-18-1 4659649 YP_962356.1 CDS Sputw3181_0952 NC_008750.1 1084135 1085181 R KEGG: son:SO3696 hypothetical protein; hypothetical protein complement(1084135..1085181) Shewanella sp. W3-18-1 4659647 YP_962357.1 CDS Sputw3181_0953 NC_008750.1 1085371 1086402 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1085371..1086402) Shewanella sp. W3-18-1 4659661 YP_962358.1 CDS Sputw3181_0954 NC_008750.1 1086979 1088286 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: she:Shewmr4_0861 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1086979..1088286 Shewanella sp. W3-18-1 4659591 YP_962359.1 CDS Sputw3181_0955 NC_008750.1 1088374 1088637 D KEGG: shm:Shewmr7_3160 hypothetical protein; hypothetical protein 1088374..1088637 Shewanella sp. W3-18-1 4659659 YP_962360.1 CDS Sputw3181_0956 NC_008750.1 1088734 1089474 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3159 ABC transporter related; ABC transporter-like protein 1088734..1089474 Shewanella sp. W3-18-1 4659635 YP_962361.1 CDS Sputw3181_0957 NC_008750.1 1089486 1090796 D PFAM: protein of unknown function DUF214; KEGG: sdn:Sden_2849 protein of unknown function DUF214; hypothetical protein 1089486..1090796 Shewanella sp. W3-18-1 4659682 YP_962362.1 CDS Sputw3181_0958 NC_008750.1 1090807 1092006 D PFAM: protein of unknown function DUF214; KEGG: sfr:Sfri_0900 protein of unknown function DUF214; hypothetical protein 1090807..1092006 Shewanella sp. W3-18-1 4659690 YP_962363.1 CDS Sputw3181_0959 NC_008750.1 1092118 1093575 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: she:Shewmr4_0866 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator 1092118..1093575 Shewanella sp. W3-18-1 4659157 YP_962364.1 CDS Sputw3181_0960 NC_008750.1 1093628 1095316 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3688 nitrogen regulation protein NtrY, putative; integral membrane sensor signal transduction histidine kinase 1093628..1095316 Shewanella sp. W3-18-1 4659213 YP_962365.1 CDS Sputw3181_0961 NC_008750.1 1095612 1096022 D KEGG: she:Shewmr4_0868 curli production assembly/transport component CsgE, putative; curli production assembly/transport component CsgE 1095612..1096022 Shewanella sp. W3-18-1 4659218 YP_962366.1 CDS Sputw3181_0962 NC_008750.1 1096033 1096428 D KEGG: she:Shewmr4_0869 curli production assembly/transport component CsgF, putative; curli production assembly/transport component CsgF 1096033..1096428 Shewanella sp. W3-18-1 4659237 YP_962367.1 CDS Sputw3181_0963 NC_008750.1 1096428 1097234 D PFAM: Curli production assembly/transport component CsgG; KEGG: shm:Shewmr7_3152 curli production assembly/transport component CsgG; curli production assembly/transport component CsgG 1096428..1097234 Shewanella sp. W3-18-1 4659243 YP_962368.1 CDS Sputw3181_0964 NC_008750.1 1097336 1097908 R PFAM: regulatory protein, TetR; KEGG: she:Shewmr4_0871 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1097336..1097908) Shewanella sp. W3-18-1 4659247 YP_962369.1 CDS Sputw3181_0965 NC_008750.1 1097959 1099383 R PFAM: aldehyde dehydrogenase; KEGG: shm:Shewmr7_3150 aldehyde dehydrogenase; aldehyde dehydrogenase complement(1097959..1099383) Shewanella sp. W3-18-1 4659256 YP_962370.1 CDS Sputw3181_0966 NC_008750.1 1099606 1099989 D KEGG: she:Shewmr4_0873 hypothetical protein; hypothetical protein 1099606..1099989 Shewanella sp. W3-18-1 4659264 YP_962371.1 CDS Sputw3181_0967 NC_008750.1 1100053 1100484 D PFAM: UspA domain protein; KEGG: shm:Shewmr7_3148 UspA domain protein; UspA domain-containing protein 1100053..1100484 Shewanella sp. W3-18-1 4659278 YP_962372.1 CDS Sputw3181_0968 NC_008750.1 1100503 1101360 R KEGG: she:Shewmr4_0876 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(1100503..1101360) Shewanella sp. W3-18-1 4659282 YP_962373.1 CDS Sputw3181_0969 NC_008750.1 1101700 1102035 D KEGG: she:Shewmr4_0878 hypothetical protein; hypothetical protein 1101700..1102035 Shewanella sp. W3-18-1 4659302 YP_962374.1 CDS Sputw3181_0970 NC_008750.1 1102211 1103500 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: shm:Shewmr7_0989 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 1102211..1103500 Shewanella sp. W3-18-1 4659314 YP_962375.1 CDS Sputw3181_0971 NC_008750.1 1103702 1104820 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1103702..1104820 Shewanella sp. W3-18-1 4659333 YP_962376.1 CDS proA NC_008750.1 1104842 1106110 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1104842..1106110 Shewanella sp. W3-18-1 4659355 YP_962377.1 CDS Sputw3181_0973 NC_008750.1 1106195 1106497 R KEGG: she:Shewmr4_0954 hypothetical protein; hypothetical protein complement(1106195..1106497) Shewanella sp. W3-18-1 4659394 YP_962378.1 CDS Sputw3181_0974 NC_008750.1 1106625 1107101 R TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: son:SO1124 conserved hypothetical protein TIGR00011; ybaK/ebsC protein complement(1106625..1107101) Shewanella sp. W3-18-1 4659441 YP_962379.1 CDS Sputw3181_0975 NC_008750.1 1107239 1108174 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: she:Shewmr4_0956 protein of unknown function DUF6, transmembrane; hypothetical protein complement(1107239..1108174) Shewanella sp. W3-18-1 4659463 YP_962380.1 CDS dnaK NC_008750.1 1108464 1110383 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1108464..1110383 Shewanella sp. W3-18-1 4659506 YP_962381.1 CDS Sputw3181_0977 NC_008750.1 1110512 1111642 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1110512..1111642 Shewanella sp. W3-18-1 4659522 YP_962382.1 CDS Sputw3181_0978 NC_008750.1 1111766 1113088 R KEGG: pfo:Pfl_4766 chemotaxis sensory transducer, PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer complement(1111766..1113088) Shewanella sp. W3-18-1 4659524 YP_962383.1 CDS Sputw3181_0979 NC_008750.1 1114141 1114671 D KEGG: she:Shewmr4_0835 hypothetical protein; hypothetical protein 1114141..1114671 Shewanella sp. W3-18-1 4659151 YP_962384.1 CDS Sputw3181_0980 NC_008750.1 1114711 1116261 D KEGG: sil:SPO1693 hypothetical protein; hypothetical protein 1114711..1116261 Shewanella sp. W3-18-1 4659550 YP_962385.1 CDS Sputw3181_0981 NC_008750.1 1116266 1117375 D hypothetical protein 1116266..1117375 Shewanella sp. W3-18-1 4659576 YP_962386.1 CDS metH NC_008750.1 1117821 1121555 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(1117821..1121555) Shewanella sp. W3-18-1 4659603 YP_962387.1 CDS Sputw3181_0983 NC_008750.1 1121828 1122553 D PFAM: Phosphoglycerate mutase; KEGG: she:Shewmr4_0839 phosphoglycerate mutase; phosphoglycerate mutase 1121828..1122553 Shewanella sp. W3-18-1 4659646 YP_962388.1 CDS Sputw3181_0984 NC_008750.1 1123060 1123941 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1033 iron-compound ABC transporter, ATP-binding protein, putative; ABC transporter-like protein 1123060..1123941 Shewanella sp. W3-18-1 4659693 YP_962389.1 CDS Sputw3181_0985 NC_008750.1 1123941 1125068 D PFAM: transport system permease protein; KEGG: she:Shewmr4_0841 transport system permease protein; transport system permease 1123941..1125068 Shewanella sp. W3-18-1 4659662 YP_962390.1 CDS cobT NC_008750.1 1125147 1126199 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1125147..1126199 Shewanella sp. W3-18-1 4660229 YP_962391.1 CDS cobS NC_008750.1 1126307 1127095 D catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1126307..1127095 Shewanella sp. W3-18-1 4660251 YP_962392.1 CDS Sputw3181_0988 NC_008750.1 1127092 1127703 D PFAM: cobalbumin biosynthesis enzyme; KEGG: shm:Shewmr7_3178 cobalbumin biosynthesis enzyme; cobalbumin biosynthesis protein 1127092..1127703 Shewanella sp. W3-18-1 4660260 YP_962393.1 CDS Sputw3181_0989 NC_008750.1 1127793 1129382 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1127793..1129382 Shewanella sp. W3-18-1 4660262 YP_962394.1 CDS Sputw3181_0990 NC_008750.1 1129442 1130065 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1129442..1130065 Shewanella sp. W3-18-1 4660267 YP_962395.1 CDS Sputw3181_0991 NC_008750.1 1130771 1131634 D PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO2036 site-specific recombinase, phage integrase family; phage integrase family protein 1130771..1131634 Shewanella sp. W3-18-1 4660265 YP_962396.1 CDS Sputw3181_0992 NC_008750.1 1131613 1132731 D PFAM: putative transposase; KEGG: son:SO2212 transposase, IS91 family, putative; putative transposase 1131613..1132731 Shewanella sp. W3-18-1 4660273 YP_962397.1 CDS Sputw3181_0993 NC_008750.1 1133901 1134266 D hypothetical protein 1133901..1134266 Shewanella sp. W3-18-1 4660278 YP_962398.1 CDS Sputw3181_0994 NC_008750.1 1135201 1136238 D KEGG: shm:Shewmr7_3175 hypothetical protein; hypothetical protein 1135201..1136238 Shewanella sp. W3-18-1 4660277 YP_962399.1 CDS Sputw3181_0995 NC_008750.1 1136255 1137082 D PFAM: periplasmic binding protein; KEGG: son:SO3709 ABC transporter, periplasmic substrate-binding protein, putative; periplasmic binding protein 1136255..1137082 Shewanella sp. W3-18-1 4660195 YP_962400.1 CDS Sputw3181_0996 NC_008750.1 1137145 1138536 R PFAM: aldehyde dehydrogenase; KEGG: ppu:PP_2488 succinic-semialdehyde dehydrogenase, putative; aldehyde dehydrogenase complement(1137145..1138536) Shewanella sp. W3-18-1 4659858 YP_962401.1 CDS gldA NC_008750.1 1138754 1139872 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(1138754..1139872) Shewanella sp. W3-18-1 4659873 YP_962402.1 CDS Sputw3181_0998 NC_008750.1 1140341 1141657 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_0998 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 1140341..1141657 Shewanella sp. W3-18-1 4659898 YP_962403.1 CDS Sputw3181_0999 NC_008750.1 1141757 1142566 D PFAM: peptidase M48, Ste24p; KEGG: son:SO1137 hypothetical protein; peptidase M48, Ste24p 1141757..1142566 Shewanella sp. W3-18-1 4659630 YP_962404.1 CDS Sputw3181_1000 NC_008750.1 1142695 1143312 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: she:Shewmr4_0963 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 1142695..1143312 Shewanella sp. W3-18-1 4659585 YP_962405.1 CDS Sputw3181_1001 NC_008750.1 1143385 1144197 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1143385..1144197 Shewanella sp. W3-18-1 4659599 YP_962406.1 CDS Sputw3181_1002 NC_008750.1 1144371 1145531 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1144371..1145531 Shewanella sp. W3-18-1 4659593 YP_962407.1 CDS carB NC_008750.1 1145559 1148783 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1145559..1148783 Shewanella sp. W3-18-1 4659915 YP_962408.1 CDS Sputw3181_1004 NC_008750.1 1148927 1149637 D PFAM: pseudouridine synthase; KEGG: sfr:Sfri_3001 pseudouridine synthase; pseudouridine synthase 1148927..1149637 Shewanella sp. W3-18-1 4659581 YP_962409.1 CDS Sputw3181_1005 NC_008750.1 1149698 1150471 R KEGG: son:SO1143 hypothetical protein; hypothetical protein complement(1149698..1150471) Shewanella sp. W3-18-1 4659583 YP_962410.1 CDS Sputw3181_1006 NC_008750.1 1150668 1151756 R PFAM: chemotaxis sensory transducer; KEGG: son:SO1144 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(1150668..1151756) Shewanella sp. W3-18-1 4659552 YP_962411.1 CDS Sputw3181_1007 NC_008750.1 1152005 1153378 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO1145 magnesium transporter; magnesium transporter complement(1152005..1153378) Shewanella sp. W3-18-1 4659936 YP_962412.1 CDS Sputw3181_1008 NC_008750.1 1153398 1154105 R KEGG: son:SO1146 hypothetical protein; hypothetical protein complement(1153398..1154105) Shewanella sp. W3-18-1 4659972 YP_962413.1 CDS Sputw3181_1009 NC_008750.1 1154879 1155214 D KEGG: son:SO1148 hypothetical protein; hypothetical protein 1154879..1155214 Shewanella sp. W3-18-1 4659982 YP_962414.1 CDS Sputw3181_1010 NC_008750.1 1155328 1156938 D KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 1155328..1156938 Shewanella sp. W3-18-1 4659998 YP_962415.1 CDS Sputw3181_1011 NC_008750.1 1156951 1157820 D KEGG: she:Shewmr4_0969 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1156951..1157820 Shewanella sp. W3-18-1 4660017 YP_962416.1 CDS Sputw3181_1012 NC_008750.1 1158123 1159313 D SMART: PUA domain containing protein; KEGG: son:SO1149 hypothetical SAM-dependent methyltransferase; PUA domain-containing protein 1158123..1159313 Shewanella sp. W3-18-1 4660071 YP_962417.1 CDS Sputw3181_1013 NC_008750.1 1159483 1160145 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(1159483..1160145) Shewanella sp. W3-18-1 4660076 YP_962418.1 CDS Sputw3181_1014 NC_008750.1 1160376 1161308 D PFAM: protein of unknown function DUF808; KEGG: she:Shewmr4_0975 protein of unknown function DUF808; hypothetical protein 1160376..1161308 Shewanella sp. W3-18-1 4660080 YP_962419.1 CDS Sputw3181_1015 NC_008750.1 1161390 1162295 D PFAM: 3'-5' exonuclease; KEGG: shm:Shewmr7_1014 3'-5' exonuclease; 3'-5' exonuclease 1161390..1162295 Shewanella sp. W3-18-1 4660089 YP_962420.1 CDS Sputw3181_1016 NC_008750.1 1162494 1163423 D KEGG: shm:Shewmr7_1015 hypothetical protein; hypothetical protein 1162494..1163423 Shewanella sp. W3-18-1 4660095 YP_962421.1 CDS Sputw3181_1017 NC_008750.1 1163529 1163867 R PFAM: SEC-C motif domain protein; KEGG: ppr:PBPRA1441 hypothetical protein; SecC motif-containing protein complement(1163529..1163867) Shewanella sp. W3-18-1 4660106 YP_962422.1 CDS Sputw3181_1018 NC_008750.1 1164387 1164623 R KEGG: shm:Shewmr7_1016 phage integrase family protein; hypothetical protein complement(1164387..1164623) Shewanella sp. W3-18-1 4659058 YP_962423.1 CDS Sputw3181_1019 NC_008750.1 1164916 1165335 D hypothetical protein 1164916..1165335 Shewanella sp. W3-18-1 4659814 YP_962424.1 CDS Sputw3181_1020 NC_008750.1 1165470 1166090 R KEGG: son:SOA0063 ISSod8, transposase; ISSod8, transposase complement(1165470..1166090) Shewanella sp. W3-18-1 4660191 YP_962425.1 CDS Sputw3181_1021 NC_008750.1 1166293 1166583 D KEGG: shm:Shewmr7_1043 hypothetical protein; hypothetical protein 1166293..1166583 Shewanella sp. W3-18-1 4660270 YP_962426.1 CDS Sputw3181_1022 NC_008750.1 1166669 1168813 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_0979 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1166669..1168813 Shewanella sp. W3-18-1 4660258 YP_962427.1 CDS Sputw3181_1023 NC_008750.1 1168803 1170059 D PFAM: protein of unknown function DUF1624; KEGG: she:Shewmr4_0980 hypothetical protein; hypothetical protein 1168803..1170059 Shewanella sp. W3-18-1 4660234 YP_962428.1 CDS Sputw3181_1024 NC_008750.1 1170154 1170621 R PFAM: Ferritin, Dps family protein; KEGG: shm:Shewmr7_1046 ferritin, Dps family protein; Ferritin, Dps family protein complement(1170154..1170621) Shewanella sp. W3-18-1 4660337 YP_962429.1 CDS Sputw3181_1025 NC_008750.1 1170829 1171179 D KEGG: shm:Shewmr7_1047 hypothetical protein; hypothetical protein 1170829..1171179 Shewanella sp. W3-18-1 4660900 YP_962430.1 CDS Sputw3181_1026 NC_008750.1 1171203 1171700 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: son:SO1160 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 1171203..1171700 Shewanella sp. W3-18-1 4660906 YP_962431.1 CDS Sputw3181_1027 NC_008750.1 1171770 1172735 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(1171770..1172735) Shewanella sp. W3-18-1 4660916 YP_962432.1 CDS lipB NC_008750.1 1172732 1173385 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(1172732..1173385) Shewanella sp. W3-18-1 4660893 YP_962433.1 CDS Sputw3181_1029 NC_008750.1 1173479 1173745 R PFAM: protein of unknown function DUF493; KEGG: shm:Shewmr7_1051 protein of unknown function DUF493; hypothetical protein complement(1173479..1173745) Shewanella sp. W3-18-1 4660940 YP_962434.1 CDS Sputw3181_1030 NC_008750.1 1173865 1175040 R PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: son:SO1164 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase complement(1173865..1175040) Shewanella sp. W3-18-1 4660957 YP_962435.1 CDS Sputw3181_1031 NC_008750.1 1175186 1176031 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: she:Shewmr4_0988 rare lipoprotein A; rare lipoprotein A complement(1175186..1176031) Shewanella sp. W3-18-1 4660974 YP_962436.1 CDS Sputw3181_1032 NC_008750.1 1176015 1177079 R TIGRFAM: lytic murein transglycosylase B; KEGG: shm:Shewmr7_1054 lytic murein transglycosylase B; lytic murein transglycosylase B complement(1176015..1177079) Shewanella sp. W3-18-1 4661031 YP_962437.1 CDS Sputw3181_1033 NC_008750.1 1177096 1178202 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: shm:Shewmr7_1055 rod shape-determining protein RodA; rod shape-determining protein RodA complement(1177096..1178202) Shewanella sp. W3-18-1 4660946 YP_962438.1 CDS Sputw3181_1034 NC_008750.1 1178199 1180055 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: shm:Shewmr7_1056 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase complement(1178199..1180055) Shewanella sp. W3-18-1 4660429 YP_962439.1 CDS Sputw3181_1035 NC_008750.1 1180117 1180587 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(1180117..1180587) Shewanella sp. W3-18-1 4660432 YP_962440.1 CDS Sputw3181_1036 NC_008750.1 1180587 1180916 R TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: shm:Shewmr7_1058 iojap-like protein; iojap family protein complement(1180587..1180916) Shewanella sp. W3-18-1 4660442 YP_962441.1 CDS Sputw3181_1037 NC_008750.1 1181024 1181671 R KEGG: shm:Shewmr7_1059 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(1181024..1181671) Shewanella sp. W3-18-1 4660454 YP_962442.1 CDS Sputw3181_1038 NC_008750.1 1181681 1182712 R KEGG: son:SO1172 DNA polymerase III delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta complement(1181681..1182712) Shewanella sp. W3-18-1 4660466 YP_962443.1 CDS Sputw3181_1039 NC_008750.1 1182765 1183259 R PFAM: Rare lipoprotein B; KEGG: shm:Shewmr7_1061 rare lipoprotein B; rare lipoprotein B complement(1182765..1183259) Shewanella sp. W3-18-1 4660517 YP_962444.1 CDS leuS NC_008750.1 1183280 1185859 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1183280..1185859) Shewanella sp. W3-18-1 4660527 YP_962445.1 CDS Sputw3181_1041 NC_008750.1 1185982 1186482 D PFAM: protein of unknown function DUF1451; KEGG: shm:Shewmr7_1063 protein of unknown function DUF1451; hypothetical protein 1185982..1186482 Shewanella sp. W3-18-1 4660541 YP_962446.1 CDS Sputw3181_1042 NC_008750.1 1186583 1187242 R KEGG: sde:Sde_2848 histidine kinase; histidine kinase complement(1186583..1187242) Shewanella sp. W3-18-1 4660546 YP_962447.1 CDS Sputw3181_1043 NC_008750.1 1187357 1187659 R KEGG: shm:Shewmr7_1064 methylation site containing protein; methylation site containing protein complement(1187357..1187659) Shewanella sp. W3-18-1 4660548 YP_962448.1 CDS Sputw3181_1044 NC_008750.1 1187711 1187860 R KEGG: son:SO1176 hypothetical protein; hypothetical protein complement(1187711..1187860) Shewanella sp. W3-18-1 4660603 YP_962449.1 CDS lnt NC_008750.1 1187871 1189427 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(1187871..1189427) Shewanella sp. W3-18-1 4660629 YP_962450.1 CDS Sputw3181_1046 NC_008750.1 1189470 1190345 R PFAM: CBS domain containing protein; transporter-associated region; KEGG: shm:Shewmr7_1066 CBS domain containing protein; hypothetical protein complement(1189470..1190345) Shewanella sp. W3-18-1 4660668 YP_962451.1 CDS Sputw3181_1047 NC_008750.1 1190385 1190846 R PFAM: protein of unknown function UPF0054; KEGG: she:Shewmr4_1002 protein of unknown function UPF0054; putative metalloprotease complement(1190385..1190846) Shewanella sp. W3-18-1 4660671 YP_962452.1 CDS Sputw3181_1048 NC_008750.1 1190836 1191885 R PFAM: PhoH family protein; KEGG: she:Shewmr4_1003 PhoH family protein; PhoH family protein complement(1190836..1191885) Shewanella sp. W3-18-1 4660678 YP_962453.1 CDS Sputw3181_1049 NC_008750.1 1192132 1193556 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1192132..1193556) Shewanella sp. W3-18-1 4660687 YP_962454.1 CDS Sputw3181_1050 NC_008750.1 1193917 1195158 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: shm:Shewmr7_1071 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 1193917..1195158 Shewanella sp. W3-18-1 4660717 YP_962455.1 CDS Sputw3181_1051 NC_008750.1 1195264 1195890 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1195264..1195890 Shewanella sp. W3-18-1 4660742 YP_962456.1 CDS Sputw3181_1052 NC_008750.1 1196025 1197116 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1196025..1197116 Shewanella sp. W3-18-1 4660774 YP_962457.1 CDS Sputw3181_1053 NC_008750.1 1198354 1199004 R KEGG: son:SO1187 hypothetical protein; hypothetical protein complement(1198354..1199004) Shewanella sp. W3-18-1 4658666 YP_962458.1 CDS Sputw3181_1054 NC_008750.1 1199415 1200053 D PFAM: PepSY-associated TM helix domain protein; KEGG: shm:Shewmr7_1075 hypothetical protein; PepSY-associated TM helix domain-containing protein 1199415..1200053 Shewanella sp. W3-18-1 4660811 YP_962459.1 CDS Sputw3181_1055 NC_008750.1 1200069 1200581 D KEGG: shm:Shewmr7_1076 lysozyme; hypothetical protein 1200069..1200581 Shewanella sp. W3-18-1 4660817 YP_962460.1 CDS Sputw3181_1056 NC_008750.1 1200619 1201437 D KEGG: shm:Shewmr7_1077 hypothetical protein; hypothetical protein 1200619..1201437 Shewanella sp. W3-18-1 4660827 YP_962461.1 CDS Sputw3181_1057 NC_008750.1 1201737 1202213 D TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO1191 transcription elongation factor GreA; transcription elongation factor GreA 1201737..1202213 Shewanella sp. W3-18-1 4660848 YP_962462.1 CDS Sputw3181_1058 NC_008750.1 1202567 1203112 D KEGG: son:SO1192 hypothetical protein; hypothetical protein 1202567..1203112 Shewanella sp. W3-18-1 4660871 YP_962463.1 CDS secD NC_008750.1 1203338 1205152 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1203338..1205152 Shewanella sp. W3-18-1 4660989 YP_962464.1 CDS secF NC_008750.1 1205155 1206051 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1205155..1206051 Shewanella sp. W3-18-1 4660945 YP_962465.1 CDS Sputw3181_1061 NC_008750.1 1206130 1206429 R PFAM: protein of unknown function UPF0044; KEGG: shm:Shewmr7_1082 protein of unknown function UPF0044; hypothetical protein complement(1206130..1206429) Shewanella sp. W3-18-1 4660931 YP_962466.1 CDS rrmJ NC_008750.1 1206520 1207149 D Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 1206520..1207149 Shewanella sp. W3-18-1 4660927 YP_962467.1 CDS Sputw3181_1063 NC_008750.1 1207179 1209152 D KEGG: she:Shewmr4_1019 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 1207179..1209152 Shewanella sp. W3-18-1 4661656 YP_962468.1 CDS Sputw3181_1064 NC_008750.1 1209364 1210197 D KEGG: shm:Shewmr7_1085 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 1209364..1210197 Shewanella sp. W3-18-1 4661365 YP_962469.1 CDS glmM NC_008750.1 1210278 1211615 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1210278..1211615 Shewanella sp. W3-18-1 4661120 YP_962470.1 CDS Sputw3181_1066 NC_008750.1 1211810 1212592 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1211810..1212592 Shewanella sp. W3-18-1 4661104 YP_962471.1 CDS secG NC_008750.1 1212594 1212929 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: son:SO1201 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 1212594..1212929 Shewanella sp. W3-18-1 4661868 YP_962472.1 CDS Sputw3181_1068 NC_008750.1 1213361 1213816 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1213361..1213816 Shewanella sp. W3-18-1 4658048 YP_962473.1 CDS nusA NC_008750.1 1213846 1215345 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1213846..1215345 Shewanella sp. W3-18-1 4661756 YP_962474.1 CDS infB NC_008750.1 1215371 1218013 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1215371..1218013 Shewanella sp. W3-18-1 4661694 YP_962475.1 CDS rbfA NC_008750.1 1218077 1218526 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1218077..1218526 Shewanella sp. W3-18-1 4661645 YP_962476.1 CDS truB NC_008750.1 1218526 1219482 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1218526..1219482 Shewanella sp. W3-18-1 4661644 YP_962477.1 CDS rpsO NC_008750.1 1219611 1219880 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1219611..1219880 Shewanella sp. W3-18-1 4661746 YP_962478.1 CDS Sputw3181_1074 NC_008750.1 1219957 1222005 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: shm:Shewmr7_1095 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(1219957..1222005) Shewanella sp. W3-18-1 4660343 YP_962479.1 CDS Sputw3181_1075 NC_008750.1 1222201 1224300 D KEGG: son:SO1209 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 1222201..1224300 Shewanella sp. W3-18-1 4661510 YP_962480.1 CDS Sputw3181_1076 NC_008750.1 1224492 1225397 D lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 1224492..1225397 Shewanella sp. W3-18-1 4661474 YP_962481.1 CDS Sputw3181_1077 NC_008750.1 1226232 1227473 R PFAM: phage integrase family protein; KEGG: eci:UTI89_C5085 integrase-like protein; phage integrase family protein complement(1226232..1227473) Shewanella sp. W3-18-1 4661424 YP_962482.1 CDS Sputw3181_1078 NC_008750.1 1227475 1227744 R hypothetical protein complement(1227475..1227744) Shewanella sp. W3-18-1 4661323 YP_962483.1 CDS Sputw3181_1079 NC_008750.1 1227747 1228721 R KEGG: dar:Daro_2530 hypothetical protein; hypothetical protein complement(1227747..1228721) Shewanella sp. W3-18-1 4661230 YP_962484.1 CDS Sputw3181_1080 NC_008750.1 1228826 1229104 R hypothetical protein complement(1228826..1229104) Shewanella sp. W3-18-1 4660666 YP_962485.1 CDS Sputw3181_1081 NC_008750.1 1229186 1229629 D hypothetical protein 1229186..1229629 Shewanella sp. W3-18-1 4660389 YP_962486.1 CDS Sputw3181_1082 NC_008750.1 1229640 1230908 R PFAM: UMUC domain protein DNA-repair protein; KEGG: stt:t4291 UV protection protein; DNA-directed DNA polymerase complement(1229640..1230908) Shewanella sp. W3-18-1 4660623 YP_962487.1 CDS Sputw3181_1083 NC_008750.1 1230916 1231365 R PFAM: peptidase S24, S26A and S26B; KEGG: sdy:SDY_1220 UmuD; putative prophage repressor complement(1230916..1231365) Shewanella sp. W3-18-1 4660610 YP_962488.1 CDS Sputw3181_1084 NC_008750.1 1232005 1232910 D PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: rfe:RF_p34 DNA polymerase III subunit epsilon; exonuclease 1232005..1232910 Shewanella sp. W3-18-1 4660609 YP_962489.1 CDS Sputw3181_1085 NC_008750.1 1232998 1233297 D hypothetical protein 1232998..1233297 Shewanella sp. W3-18-1 4660589 YP_962490.1 CDS Sputw3181_1086 NC_008750.1 1233619 1234542 D KEGG: shm:Shewmr7_1781 hypothetical protein; hypothetical protein 1233619..1234542 Shewanella sp. W3-18-1 4660312 YP_962491.1 CDS Sputw3181_1087 NC_008750.1 1234656 1237079 D PFAM: N-6 DNA methylase; KEGG: shm:Shewmr7_1782 N-6 DNA methylase; N-6 DNA methylase 1234656..1237079 Shewanella sp. W3-18-1 4660486 YP_962492.1 CDS Sputw3181_1088 NC_008750.1 1237086 1238375 D KEGG: hit:NTHI0192 putative type I site-specific restriction-modification system, S subunit; putative type I site-specific restriction-modification system, S subunit 1237086..1238375 Shewanella sp. W3-18-1 4660481 YP_962493.1 CDS Sputw3181_1089 NC_008750.1 1238385 1239548 D KEGG: shm:Shewmr7_1784 hypothetical protein; hypothetical protein 1238385..1239548 Shewanella sp. W3-18-1 4660092 YP_962494.1 CDS Sputw3181_1090 NC_008750.1 1239563 1242580 D PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_1787 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit 1239563..1242580 Shewanella sp. W3-18-1 4659834 YP_962495.1 CDS Sputw3181_1091 NC_008750.1 1242603 1243688 D KEGG: shm:Shewmr7_1788 ATP-binding region, ATPase-like protein; ATP-binding region, ATPase-like protein 1242603..1243688 Shewanella sp. W3-18-1 4660064 YP_962496.1 CDS Sputw3181_1092 NC_008750.1 1243711 1244262 D KEGG: shm:Shewmr7_1789 hypothetical protein; hypothetical protein 1243711..1244262 Shewanella sp. W3-18-1 4659828 YP_962497.1 CDS Sputw3181_1093 NC_008750.1 1244391 1244564 D KEGG: shm:Shewmr7_1790 hypothetical protein; hypothetical protein 1244391..1244564 Shewanella sp. W3-18-1 4659826 YP_962498.1 CDS Sputw3181_1094 NC_008750.1 1244566 1244934 D PFAM: membrane-bound metal-dependent hydrolase; KEGG: shm:Shewmr7_1791 membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 1244566..1244934 Shewanella sp. W3-18-1 4660008 YP_962499.1 CDS Sputw3181_1095 NC_008750.1 1244944 1246098 D KEGG: shm:Shewmr7_1792 hypothetical protein; hypothetical protein 1244944..1246098 Shewanella sp. W3-18-1 4659787 YP_962500.1 CDS Sputw3181_1096 NC_008750.1 1246091 1247281 D KEGG: shm:Shewmr7_1793 hypothetical protein; hypothetical protein 1246091..1247281 Shewanella sp. W3-18-1 4659780 YP_962501.1 CDS Sputw3181_1097 NC_008750.1 1247282 1247995 D KEGG: shm:Shewmr7_1794 hypothetical protein; hypothetical protein 1247282..1247995 Shewanella sp. W3-18-1 4659957 YP_962502.1 CDS Sputw3181_1098 NC_008750.1 1248113 1250263 D PFAM: Relaxase; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dar:Daro_2306 relaxase; metal dependent phosphohydrolase 1248113..1250263 Shewanella sp. W3-18-1 4659771 YP_962503.1 CDS Sputw3181_1099 NC_008750.1 1250312 1252135 D KEGG: rfr:Rfer_4266 hypothetical protein; hypothetical protein 1250312..1252135 Shewanella sp. W3-18-1 4659679 YP_962504.1 CDS Sputw3181_1100 NC_008750.1 1252145 1252705 D hypothetical protein 1252145..1252705 Shewanella sp. W3-18-1 4659875 YP_962505.1 CDS Sputw3181_1101 NC_008750.1 1252692 1253327 D hypothetical protein 1252692..1253327 Shewanella sp. W3-18-1 4659871 YP_962506.1 CDS Sputw3181_1102 NC_008750.1 1253354 1253941 R hypothetical protein complement(1253354..1253941) Shewanella sp. W3-18-1 4659442 YP_962507.1 CDS Sputw3181_1103 NC_008750.1 1253955 1254194 R hypothetical protein complement(1253955..1254194) Shewanella sp. W3-18-1 4659134 YP_962508.1 CDS Sputw3181_1104 NC_008750.1 1254230 1254511 D hypothetical protein 1254230..1254511 Shewanella sp. W3-18-1 4659385 YP_962509.1 CDS Sputw3181_1105 NC_008750.1 1254508 1255134 D KEGG: eba:p1B162 sex pilus assembly protein; hypothetical protein 1254508..1255134 Shewanella sp. W3-18-1 4661532 YP_962510.1 CDS Sputw3181_1106 NC_008750.1 1255115 1256014 D KEGG: sty:HCM1.71 putative periplasmic protein; hypothetical protein 1255115..1256014 Shewanella sp. W3-18-1 4659367 YP_962511.1 CDS Sputw3181_1107 NC_008750.1 1256017 1257306 D PFAM: TraB pilus assembly family protein; KEGG: eba:p1B160 sex pilus assembly protein; TraB pilus assembly family protein 1256017..1257306 Shewanella sp. W3-18-1 4659322 YP_962512.1 CDS Sputw3181_1108 NC_008750.1 1257303 1257953 D KEGG: eba:p1B157 pilus assembly protein; hypothetical protein 1257303..1257953 Shewanella sp. W3-18-1 4659108 YP_962513.1 CDS Sputw3181_1109 NC_008750.1 1257950 1258339 D hypothetical protein 1257950..1258339 Shewanella sp. W3-18-1 4659287 YP_962514.1 CDS Sputw3181_1110 NC_008750.1 1258748 1261243 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: xcv:XCV2336 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase 1258748..1261243 Shewanella sp. W3-18-1 4659101 YP_962515.1 CDS Sputw3181_1111 NC_008750.1 1261269 1261733 D TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: xcv:XCV2335 transcriptional regulator, MerR family; MerR family transcriptional regulator 1261269..1261733 Shewanella sp. W3-18-1 4659275 YP_962516.1 CDS Sputw3181_1113 NC_008750.1 1262840 1263595 R PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06235 IstB helper protein, IS21 family; IstB ATP binding domain-containing protein complement(1262840..1263595) Shewanella sp. W3-18-1 4657983 YP_962517.1 CDS Sputw3181_1114 NC_008750.1 1263607 1265148 R PFAM: Integrase, catalytic region; KEGG: hch:HCH_06236 transposase, IS21 family; integrase catalytic subunit complement(1263607..1265148) Shewanella sp. W3-18-1 4658857 YP_962518.1 CDS Sputw3181_1115 NC_008750.1 1265250 1265513 D KEGG: bxe:Bxe_A4439 heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; hypothetical protein 1265250..1265513 Shewanella sp. W3-18-1 4658613 YP_962519.1 CDS Sputw3181_1116 NC_008750.1 1265548 1267053 D PFAM: Integrase, catalytic region; KEGG: ecc:c5144 hypothetical protein; integrase catalytic subunit 1265548..1267053 Shewanella sp. W3-18-1 4658804 YP_962520.1 CDS Sputw3181_1117 NC_008750.1 1267046 1267801 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gvi:gll4066 putative transposase; IstB ATP binding domain-containing protein 1267046..1267801 Shewanella sp. W3-18-1 4658357 YP_962521.1 CDS Sputw3181_1118 NC_008750.1 1267824 1268675 R PFAM: Integrase, catalytic region; KEGG: vpa:VP1787 putative transposase; integrase catalytic subunit complement(1267824..1268675) Shewanella sp. W3-18-1 4658662 YP_962522.1 CDS Sputw3181_1119 NC_008750.1 1268690 1268974 R PFAM: transposase IS3/IS911 family protein; KEGG: ssn:SSO_P025 IS3 ORF1; transposase IS3/IS911 family protein complement(1268690..1268974) Shewanella sp. W3-18-1 4658507 YP_962523.1 CDS Sputw3181_1120 NC_008750.1 1269595 1270020 D TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: xcv:XCV2335 transcriptional regulator, MerR family; MerR family transcriptional regulator 1269595..1270020 Shewanella sp. W3-18-1 4658168 YP_962524.1 CDS Sputw3181_1122 NC_008750.1 1270783 1271136 D PFAM: regulatory protein, ArsR; KEGG: xcv:XCV2337 transcriptional regulator, ArsR family; regulatory protein ArsR 1270783..1271136 Shewanella sp. W3-18-1 4657697 YP_962525.1 CDS Sputw3181_1124 NC_008750.1 1272501 1273529 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: xcv:XCV2338 cobalt-zinc-cadmium resistance protein; cation diffusion facilitator family transporter 1272501..1273529 Shewanella sp. W3-18-1 4657692 YP_962526.1 CDS Sputw3181_1125 NC_008750.1 1273574 1273852 D PFAM: regulatory protein, ArsR; KEGG: xcv:XCV2337 transcriptional regulator, ArsR family; regulatory protein ArsR 1273574..1273852 Shewanella sp. W3-18-1 4657720 YP_962527.1 CDS Sputw3181_1126 NC_008750.1 1274449 1277103 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: pcr:Pcryo_1347 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 1274449..1277103 Shewanella sp. W3-18-1 4658104 YP_962528.1 CDS Sputw3181_1127 NC_008750.1 1277356 1278207 R PFAM: Integrase, catalytic region; KEGG: vpa:VP1787 putative transposase; integrase catalytic subunit complement(1277356..1278207) Shewanella sp. W3-18-1 4658086 YP_962529.1 CDS Sputw3181_1128 NC_008750.1 1278222 1278506 R PFAM: transposase IS3/IS911 family protein; KEGG: ssn:SSO_P025 IS3 ORF1; transposase IS3/IS911 family protein complement(1278222..1278506) Shewanella sp. W3-18-1 4658067 YP_962530.1 CDS Sputw3181_1129 NC_008750.1 1278712 1280022 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sec:SC0394 putative cation efflux pump; RND family efflux transporter MFP subunit 1278712..1280022 Shewanella sp. W3-18-1 4658064 YP_962531.1 CDS Sputw3181_1130 NC_008750.1 1280019 1283210 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: stm:STM0351 putative cation efflux system protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1280019..1283210 Shewanella sp. W3-18-1 4658045 YP_962532.1 CDS Sputw3181_1131 NC_008750.1 1283212 1284705 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sec:SC0393 outer membrane efflux protein-like protein; RND efflux system outer membrane lipoprotein 1283212..1284705 Shewanella sp. W3-18-1 4658036 YP_962533.1 CDS Sputw3181_1135 NC_008750.1 1285681 1285902 D KEGG: rpd:RPD_2310 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux protein 1285681..1285902 Shewanella sp. W3-18-1 4661460 YP_962534.1 CDS Sputw3181_1136 NC_008750.1 1286021 1286191 D KEGG: stm:STM0355 putative Copper chaperone; putative copper chaperone 1286021..1286191 Shewanella sp. W3-18-1 4660944 YP_962535.1 CDS Sputw3181_1138 NC_008750.1 1287161 1287415 D KEGG: ppr:PBPRA1824 hypothetical protein; hypothetical protein 1287161..1287415 Shewanella sp. W3-18-1 4657900 YP_962536.1 CDS Sputw3181_1139 NC_008750.1 1287626 1288318 D KEGG: psp:PSPPH_1359 thiol:disulfide interchange protein DsbC; hypothetical protein 1287626..1288318 Shewanella sp. W3-18-1 4657950 YP_962537.1 CDS Sputw3181_1140 NC_008750.1 1288318 1290717 D KEGG: eba:p1B154 sex pilus assembly protein; sex pilus assembly protein 1288318..1290717 Shewanella sp. W3-18-1 4657937 YP_962538.1 CDS Sputw3181_1141 NC_008750.1 1290710 1291057 D hypothetical protein 1290710..1291057 Shewanella sp. W3-18-1 4657686 YP_962539.1 CDS Sputw3181_1142 NC_008750.1 1291041 1291553 D KEGG: sty:HCM1.98 putative pilin maturation protein; hypothetical protein 1291041..1291553 Shewanella sp. W3-18-1 4657911 YP_962540.1 CDS Sputw3181_1143 NC_008750.1 1291564 1292688 D KEGG: sty:HCM1.99 plasmid transfer protein; hypothetical protein 1291564..1292688 Shewanella sp. W3-18-1 4657678 YP_962541.1 CDS Sputw3181_1144 NC_008750.1 1292672 1293700 D PFAM: TraU family protein; KEGG: sty:HCM1.100 plasmid transfer protein; TraU family protein 1292672..1293700 Shewanella sp. W3-18-1 4657868 YP_962542.1 CDS Sputw3181_1145 NC_008750.1 1293703 1297395 D PFAM: Mating pair stabilisation TraN; KEGG: sty:HCM1.101 plasmid transfer protein; mating pair stabilisation TraN 1293703..1297395 Shewanella sp. W3-18-1 4657864 YP_962543.1 CDS Sputw3181_1146 NC_008750.1 1297637 1297885 D hypothetical protein 1297637..1297885 Shewanella sp. W3-18-1 4657829 YP_962544.1 CDS Sputw3181_1147 NC_008750.1 1297895 1300168 D KEGG: bca:BCE_1701 hypothetical protein; hypothetical protein 1297895..1300168 Shewanella sp. W3-18-1 4659912 YP_962545.1 CDS Sputw3181_1148 NC_008750.1 1300188 1300706 D hypothetical protein 1300188..1300706 Shewanella sp. W3-18-1 4657785 YP_962546.1 CDS Sputw3181_1149 NC_008750.1 1300765 1301439 R PFAM: Endonuclease I; KEGG: sbo:SBO_3045 DNA-specific endonuclease I; deoxyribonuclease I complement(1300765..1301439) Shewanella sp. W3-18-1 4658400 YP_962547.1 CDS Sputw3181_1150 NC_008750.1 1301548 1302150 R hypothetical protein complement(1301548..1302150) Shewanella sp. W3-18-1 4657885 YP_962548.1 CDS Sputw3181_1151 NC_008750.1 1302518 1302844 D hypothetical protein 1302518..1302844 Shewanella sp. W3-18-1 4657976 YP_962549.1 CDS Sputw3181_1152 NC_008750.1 1302860 1303279 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: abo:ABO_0430 single-stranded DNA-binding protein; single-strand binding protein 1302860..1303279 Shewanella sp. W3-18-1 4658143 YP_962550.1 CDS Sputw3181_1153 NC_008750.1 1303359 1304177 D TIGRFAM: phage recombination protein Bet; PFAM: RecT protein; KEGG: ecp:ECP_1141 bacteriophage recombination protein; phage recombination protein Bet 1303359..1304177 Shewanella sp. W3-18-1 4658223 YP_962551.1 CDS Sputw3181_1154 NC_008750.1 1304464 1305480 D KEGG: eba:p1B105 hypothetical protein; endonuclease-like phage-like protein 1304464..1305480 Shewanella sp. W3-18-1 4658267 YP_962552.1 CDS Sputw3181_1155 NC_008750.1 1305573 1306649 D PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: dvu:DVU2037 CobS protein, putative; ATPase 1305573..1306649 Shewanella sp. W3-18-1 4658276 YP_962553.1 CDS Sputw3181_1156 NC_008750.1 1306649 1307416 D hypothetical protein 1306649..1307416 Shewanella sp. W3-18-1 4658322 YP_962554.1 CDS Sputw3181_1157 NC_008750.1 1307516 1308469 D KEGG: lip:LI0186 hypothetical protein; hypothetical protein 1307516..1308469 Shewanella sp. W3-18-1 4658344 YP_962555.1 CDS Sputw3181_1158 NC_008750.1 1308531 1308971 D hypothetical protein 1308531..1308971 Shewanella sp. W3-18-1 4658453 YP_962556.1 CDS Sputw3181_1159 NC_008750.1 1309041 1310696 D PFAM: von Willebrand factor, type A; VWA containing CoxE family protein; KEGG: gsu:GSU2161 hypothetical protein; von Willebrand factor type A domain-containing protein 1309041..1310696 Shewanella sp. W3-18-1 4659009 YP_962557.1 CDS Sputw3181_1160 NC_008750.1 1310780 1311277 D PFAM: DNA repair protein RadC; KEGG: vvy:VV2251 DNA repair protein; DNA repair protein RadC 1310780..1311277 Shewanella sp. W3-18-1 4658752 YP_962558.1 CDS Sputw3181_1161 NC_008750.1 1311277 1311618 D hypothetical protein 1311277..1311618 Shewanella sp. W3-18-1 4658861 YP_962559.1 CDS Sputw3181_1162 NC_008750.1 1311710 1312783 D PFAM: Phage P4 alpha, zinc-binding domain protein; KEGG: dar:Daro_2694 hypothetical protein; phage P4 alpha zinc-binding domain-containing protein 1311710..1312783 Shewanella sp. W3-18-1 4658895 YP_962560.1 CDS Sputw3181_1163 NC_008750.1 1312873 1313580 D hypothetical protein 1312873..1313580 Shewanella sp. W3-18-1 4658943 YP_962561.1 CDS Sputw3181_1164 NC_008750.1 1313953 1314363 D KEGG: sdn:Sden_0608 hypothetical protein; hypothetical protein 1313953..1314363 Shewanella sp. W3-18-1 4658988 YP_962562.1 CDS Sputw3181_1165 NC_008750.1 1314429 1317551 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: sde:Sde_1955 cation efflux system protein; CzcA family heavy metal efflux protein complement(1314429..1317551) Shewanella sp. W3-18-1 4659002 YP_962563.1 CDS Sputw3181_1166 NC_008750.1 1317561 1318580 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sde:Sde_1956 hypothetical protein; biotin/lipoyl attachment domain-containing protein complement(1317561..1318580) Shewanella sp. W3-18-1 4658962 YP_962564.1 CDS Sputw3181_1167 NC_008750.1 1318659 1319903 R PFAM: outer membrane efflux protein; KEGG: sde:Sde_1958 aconitate hydratase 1; outer membrane efflux protein complement(1318659..1319903) Shewanella sp. W3-18-1 4659265 YP_962565.1 CDS Sputw3181_1168 NC_008750.1 1319955 1320320 R hypothetical protein complement(1319955..1320320) Shewanella sp. W3-18-1 4659449 YP_962566.1 CDS Sputw3181_1169 NC_008750.1 1320363 1321268 R KEGG: abo:ABO_1368 cation efflux system permease, putative; cation efflux system permease complement(1320363..1321268) Shewanella sp. W3-18-1 4659478 YP_962567.1 CDS Sputw3181_1170 NC_008750.1 1321291 1321755 D TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: sde:Sde_1961 putative transcriptional regulator, MerR family; MerR family transcriptional regulator 1321291..1321755 Shewanella sp. W3-18-1 4659642 YP_962568.1 CDS Sputw3181_1171 NC_008750.1 1321777 1322694 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tcx:Tcr_1429 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 1321777..1322694 Shewanella sp. W3-18-1 4660275 YP_962569.1 CDS Sputw3181_1172 NC_008750.1 1322696 1323022 D PFAM: protein of unknown function UPF0060; KEGG: abo:ABO_1373 hypothetical protein; hypothetical protein 1322696..1323022 Shewanella sp. W3-18-1 4659999 YP_962570.1 CDS Sputw3181_1173 NC_008750.1 1323458 1324402 D KEGG: eba:p1B150 sex pilus assembly protein; sex pilus assembly protein 1323458..1324402 Shewanella sp. W3-18-1 4660108 YP_962571.1 CDS Sputw3181_1174 NC_008750.1 1324405 1325793 D PFAM: TraH family protein; KEGG: stm:PSLT100 pilus assembly protein; TraH family protein 1324405..1325793 Shewanella sp. W3-18-1 4660134 YP_962572.1 CDS Sputw3181_1175 NC_008750.1 1325797 1329366 D PFAM: TraG domain protein; KEGG: eba:p1B148 sex pilus assembly; TraG domain-containing protein 1325797..1329366 Shewanella sp. W3-18-1 4660172 YP_962573.1 CDS Sputw3181_1176 NC_008750.1 1329399 1329830 R hypothetical protein complement(1329399..1329830) Shewanella sp. W3-18-1 4660236 YP_962574.1 CDS Sputw3181_1177 NC_008750.1 1329888 1330421 R KEGG: rfr:Rfer_3701 flagellar regulon master regulator subunit FlhC; hypothetical protein complement(1329888..1330421) Shewanella sp. W3-18-1 4660289 YP_962575.1 CDS Sputw3181_1178 NC_008750.1 1330418 1330717 R hypothetical protein complement(1330418..1330717) Shewanella sp. W3-18-1 4660537 YP_962576.1 CDS Sputw3181_1179 NC_008750.1 1330714 1331262 R PFAM: Lytic transglycosylase, catalytic; KEGG: net:Neut_0100 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic complement(1330714..1331262) Shewanella sp. W3-18-1 4660828 YP_962577.1 CDS Sputw3181_1180 NC_008750.1 1331249 1331911 R KEGG: tcx:Tcr_0792 hypothetical protein; hypothetical protein complement(1331249..1331911) Shewanella sp. W3-18-1 4660874 YP_962578.1 CDS Sputw3181_1181 NC_008750.1 1331898 1332767 R hypothetical protein complement(1331898..1332767) Shewanella sp. W3-18-1 4660904 YP_962579.1 CDS Sputw3181_1182 NC_008750.1 1332823 1333074 R KEGG: par:Psyc_0471 hypothetical protein; hypothetical protein complement(1332823..1333074) Shewanella sp. W3-18-1 4661003 YP_962580.1 CDS Sputw3181_1183 NC_008750.1 1333192 1333839 D PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; bacteriophage CI repressor; KEGG: sfv:SFV_0270 putative prophage repressor CI; putative prophage repressor 1333192..1333839 Shewanella sp. W3-18-1 4660985 YP_962581.1 CDS prfC NC_008750.1 1334096 1335682 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1334096..1335682 Shewanella sp. W3-18-1 4661528 YP_962582.1 CDS Sputw3181_1185 NC_008750.1 1335765 1335950 D KEGG: sfr:Sfri_0998 hypothetical protein; hypothetical protein 1335765..1335950 Shewanella sp. W3-18-1 4661493 YP_962583.1 CDS Sputw3181_1186 NC_008750.1 1335961 1336725 D PFAM: TatD-related deoxyribonuclease; KEGG: son:SO1213 hydrolase, TatD family; TatD-related deoxyribonuclease 1335961..1336725 Shewanella sp. W3-18-1 4660749 YP_962584.1 CDS Sputw3181_1187 NC_008750.1 1336902 1338161 D TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: shm:Shewmr7_1100 nucleoside transporter; nucleoside transporter 1336902..1338161 Shewanella sp. W3-18-1 4660393 YP_962585.1 CDS Sputw3181_1188 NC_008750.1 1338521 1339378 D PFAM: nucleoside-specific channel-forming protein, Tsx; KEGG: shm:Shewmr7_1101 nucleoside-specific channel-forming protein, Tsx; nucleoside-specific channel-forming protein, Tsx 1338521..1339378 Shewanella sp. W3-18-1 4660611 YP_962586.1 CDS Sputw3181_1189 NC_008750.1 1339785 1340555 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1339785..1340555 Shewanella sp. W3-18-1 4660539 YP_962587.1 CDS deoA NC_008750.1 1340740 1342071 D Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 1340740..1342071 Shewanella sp. W3-18-1 4660478 YP_962588.1 CDS Sputw3181_1191 NC_008750.1 1342081 1343295 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1342081..1343295 Shewanella sp. W3-18-1 4660063 YP_962589.1 CDS deoD NC_008750.1 1343387 1344097 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1343387..1344097 Shewanella sp. W3-18-1 4660009 YP_962590.1 CDS Sputw3181_1193 NC_008750.1 1344284 1345315 R KEGG: son:SO1222 membrane protein; membrane protein complement(1344284..1345315) Shewanella sp. W3-18-1 4659946 YP_962591.1 CDS Sputw3181_1194 NC_008750.1 1345380 1346375 D KEGG: she:Shewmr4_1042 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB 1345380..1346375 Shewanella sp. W3-18-1 4659900 YP_962592.1 CDS Sputw3181_1195 NC_008750.1 1346491 1347468 D KEGG: shm:Shewmr7_1108 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 1346491..1347468 Shewanella sp. W3-18-1 4659376 YP_962593.1 CDS Sputw3181_1196 NC_008750.1 1347481 1349868 R PFAM: type IV pilus assembly PilZ; KEGG: she:Shewmr4_1044 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(1347481..1349868) Shewanella sp. W3-18-1 4659338 YP_962594.1 CDS Sputw3181_1197 NC_008750.1 1350025 1351389 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1350025..1351389 Shewanella sp. W3-18-1 4659092 YP_962595.1 CDS Sputw3181_1198 NC_008750.1 1351449 1351820 R PFAM: type IV pilus assembly PilZ; KEGG: shm:Shewmr7_1111 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(1351449..1351820) Shewanella sp. W3-18-1 4659164 YP_962596.1 CDS Sputw3181_1199 NC_008750.1 1352410 1353762 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO1236 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 1352410..1353762 Shewanella sp. W3-18-1 4658606 YP_962597.1 CDS Sputw3181_1200 NC_008750.1 1353875 1354306 R PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_1120 CBS domain containing protein; hypothetical protein complement(1353875..1354306) Shewanella sp. W3-18-1 4658755 YP_962598.1 CDS Sputw3181_1201 NC_008750.1 1354431 1356323 R PFAM: phospholipid/glycerol acyltransferase; KEGG: shm:Shewmr7_1121 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(1354431..1356323) Shewanella sp. W3-18-1 4658733 YP_962599.1 CDS Sputw3181_1202 NC_008750.1 1356313 1357380 R PFAM: metallophosphoesterase; KEGG: son:SO1239 hypothetical protein; metallophosphoesterase complement(1356313..1357380) Shewanella sp. W3-18-1 4658385 YP_962600.1 CDS Sputw3181_1203 NC_008750.1 1357710 1360295 R KEGG: ilo:IL2089 predicted ATPase, possibly involved in inorganic ion transport; ATPase complement(1357710..1360295) Shewanella sp. W3-18-1 4658173 YP_962601.1 CDS Sputw3181_1204 NC_008750.1 1361060 1362391 R PFAM: nucleoside recognition domain protein; KEGG: shm:Shewmr7_1129 nucleoside recognition domain protein; nucleoside recognition domain-containing protein complement(1361060..1362391) Shewanella sp. W3-18-1 4657699 YP_962602.1 CDS Sputw3181_1205 NC_008750.1 1363135 1363815 D KEGG: she:Shewmr4_1059 hypothetical protein; hypothetical protein 1363135..1363815 Shewanella sp. W3-18-1 4657696 YP_962603.1 CDS Sputw3181_1206 NC_008750.1 1363840 1364715 R PFAM: peptidase U32; KEGG: son:SO1248 hypothetical peptidase; peptidase U32 complement(1363840..1364715) Shewanella sp. W3-18-1 4657914 YP_962604.1 CDS Sputw3181_1207 NC_008750.1 1364757 1365758 R PFAM: peptidase U32; KEGG: she:Shewmr4_1061 peptidase U32; peptidase U32 complement(1364757..1365758) Shewanella sp. W3-18-1 4657893 YP_962605.1 CDS Sputw3181_1208 NC_008750.1 1365897 1366433 D KEGG: shm:Shewmr7_1134 sterol-binding domain protein; sterol-binding domain-containing protein 1365897..1366433 Shewanella sp. W3-18-1 4657794 YP_962606.1 CDS Sputw3181_1209 NC_008750.1 1366529 1366780 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_1135 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(1366529..1366780) Shewanella sp. W3-18-1 4661878 YP_962607.1 CDS Sputw3181_1210 NC_008750.1 1366784 1368151 R PFAM: peptidase U32; KEGG: son:SO1252 peptidase, U32 family; peptidase U32 complement(1366784..1368151) Shewanella sp. W3-18-1 4657781 YP_962608.1 CDS Sputw3181_1211 NC_008750.1 1368462 1369304 D PFAM: HDOD; KEGG: shm:Shewmr7_1137 putative signal transduction protein; putative signal transduction protein 1368462..1369304 Shewanella sp. W3-18-1 4657791 YP_962609.1 CDS Sputw3181_1212 NC_008750.1 1369339 1370835 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: she:Shewmr4_1066 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 1369339..1370835 Shewanella sp. W3-18-1 4657930 YP_962610.1 CDS Sputw3181_1213 NC_008750.1 1370909 1371334 R PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_1139 thioesterase superfamily protein; thioesterase superfamily protein complement(1370909..1371334) Shewanella sp. W3-18-1 4657948 YP_962611.1 CDS Sputw3181_1214 NC_008750.1 1371577 1372557 D PFAM: response regulator receiver; CheW domain protein; KEGG: vpa:VPA0746 chemotaxis protein CheV; putative CheW protein 1371577..1372557 Shewanella sp. W3-18-1 4657965 YP_962612.1 CDS Sputw3181_1215 NC_008750.1 1372708 1373964 R PFAM: adenylosuccinate synthetase; KEGG: shm:Shewmr7_1140 adenylosuccinate synthase; adenylosuccinate synthase complement(1372708..1373964) Shewanella sp. W3-18-1 4658056 YP_962613.1 CDS Sputw3181_1216 NC_008750.1 1374105 1374995 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1141 transcriptional regulator, LysR family; LysR family transcriptional regulator 1374105..1374995 Shewanella sp. W3-18-1 4658212 YP_962614.1 CDS Sputw3181_1217 NC_008750.1 1374976 1375791 R KEGG: she:Shewmr4_1070 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(1374976..1375791) Shewanella sp. W3-18-1 4658217 YP_962615.1 CDS Sputw3181_1218 NC_008750.1 1376023 1376451 D PFAM: OsmC family protein; KEGG: shm:Shewmr7_1143 OsmC family protein; OsmC family protein 1376023..1376451 Shewanella sp. W3-18-1 4658300 YP_962616.1 CDS Sputw3181_1219 NC_008750.1 1376524 1377168 R PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_1144 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1376524..1377168) Shewanella sp. W3-18-1 4658346 YP_962617.1 CDS Sputw3181_1220 NC_008750.1 1377585 1378823 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_1073 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1377585..1378823 Shewanella sp. W3-18-1 4658352 YP_962618.1 CDS Sputw3181_1221 NC_008750.1 1378837 1382013 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1074 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1378837..1382013 Shewanella sp. W3-18-1 4658410 YP_962619.1 CDS Sputw3181_1222 NC_008750.1 1382119 1382592 R PFAM: protein of unknown function DUF88; KEGG: sdn:Sden_0372 protein of unknown function DUF88; hypothetical protein complement(1382119..1382592) Shewanella sp. W3-18-1 4658456 YP_962620.1 CDS Sputw3181_1223 NC_008750.1 1382739 1383515 R PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO3488 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator complement(1382739..1383515) Shewanella sp. W3-18-1 4658434 YP_962621.1 CDS Sputw3181_1224 NC_008750.1 1383658 1384827 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_1082 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 1383658..1384827 Shewanella sp. W3-18-1 4658422 YP_962622.1 CDS Sputw3181_1225 NC_008750.1 1384915 1388055 R PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_1149 acriflavin resistance protein; acriflavin resistance protein complement(1384915..1388055) Shewanella sp. W3-18-1 4658407 YP_962623.1 CDS Sputw3181_1226 NC_008750.1 1388055 1389173 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_1150 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1388055..1389173) Shewanella sp. W3-18-1 4658392 YP_962624.1 CDS Sputw3181_1227 NC_008750.1 1389477 1389974 R KEGG: pfl:PFL_0312 hypothetical protein; ketosteroid isomerase-like protein complement(1389477..1389974) Shewanella sp. W3-18-1 4658865 YP_962625.1 CDS Sputw3181_1228 NC_008750.1 1389967 1390668 R KEGG: shm:Shewmr7_1155 putative protein-disulfide isomerase; putative protein-disulfide isomerase complement(1389967..1390668) Shewanella sp. W3-18-1 4658883 YP_962626.1 CDS Sputw3181_1229 NC_008750.1 1390823 1391746 R PFAM: beta-lactamase domain protein; KEGG: son:SO3474 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein complement(1390823..1391746) Shewanella sp. W3-18-1 4658885 YP_962627.1 CDS Sputw3181_1230 NC_008750.1 1391942 1392883 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1157 transcriptional regulator, LysR family; LysR family transcriptional regulator 1391942..1392883 Shewanella sp. W3-18-1 4658917 YP_962628.1 CDS Sputw3181_1231 NC_008750.1 1393028 1394695 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(1393028..1394695) Shewanella sp. W3-18-1 4658621 YP_962629.1 CDS glyA NC_008750.1 1394885 1396138 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1394885..1396138 Shewanella sp. W3-18-1 4658949 YP_962630.1 CDS nrdR NC_008750.1 1396339 1396788 D PFAM: ATP-cone domain protein; KEGG: shm:Shewmr7_1161 ribonucleotide reductase regulator NrdR-like protein; transcriptional regulator NrdR 1396339..1396788 Shewanella sp. W3-18-1 4659029 YP_962631.1 CDS Sputw3181_1234 NC_008750.1 1396896 1398050 D KEGG: son:SO3469 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 1396896..1398050 Shewanella sp. W3-18-1 4659041 YP_962632.1 CDS Sputw3181_1235 NC_008750.1 1398062 1398718 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1398062..1398718 Shewanella sp. W3-18-1 4659027 YP_962633.1 CDS Sputw3181_1236 NC_008750.1 1398784 1399887 D PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: shm:Shewmr7_1164 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1398784..1399887 Shewanella sp. W3-18-1 4658977 YP_962634.1 CDS ribH NC_008750.1 1400019 1400495 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1400019..1400495 Shewanella sp. W3-18-1 4658959 YP_962635.1 CDS nusB NC_008750.1 1400510 1400914 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1400510..1400914 Shewanella sp. W3-18-1 4659046 YP_962636.1 CDS Sputw3181_1239 NC_008750.1 1400978 1401949 D KEGG: she:Shewmr4_1101 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 1400978..1401949 Shewanella sp. W3-18-1 4659615 YP_962637.1 CDS Sputw3181_1240 NC_008750.1 1401965 1402459 D PFAM: phosphatidylglycerophosphatase A; KEGG: shm:Shewmr7_1168 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase 1401965..1402459 Shewanella sp. W3-18-1 4659683 YP_962638.1 CDS Sputw3181_1241 NC_008750.1 1402613 1404271 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: she:Shewmr4_1104 DNA repair protein RecN; recombination and repair protein complement(1402613..1404271) Shewanella sp. W3-18-1 4659582 YP_962639.1 CDS Sputw3181_1242 NC_008750.1 1404399 1405361 R PFAM: Auxin Efflux Carrier; KEGG: shm:Shewmr7_1171 auxin efflux carrier; auxin efflux carrier complement(1404399..1405361) Shewanella sp. W3-18-1 4659038 YP_962640.1 CDS Sputw3181_1243 NC_008750.1 1405736 1406635 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3460 transcriptional regulator, LysR family; LysR family transcriptional regulator 1405736..1406635 Shewanella sp. W3-18-1 4659022 YP_962641.1 CDS Sputw3181_1244 NC_008750.1 1406897 1407496 R PFAM: protein of unknown function DUF416; KEGG: she:Shewmr4_1108 protein of unknown function DUF416; hypothetical protein complement(1406897..1407496) Shewanella sp. W3-18-1 4659203 YP_962642.1 CDS Sputw3181_1245 NC_008750.1 1407471 1410272 R part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA complement(1407471..1410272) Shewanella sp. W3-18-1 4659059 YP_962643.1 CDS rumA NC_008750.1 1410373 1411725 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1410373..1411725 Shewanella sp. W3-18-1 4658590 YP_962644.1 CDS Sputw3181_1247 NC_008750.1 1411878 1414085 D KEGG: son:SO3455 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1411878..1414085 Shewanella sp. W3-18-1 4659294 YP_962645.1 CDS Sputw3181_1248 NC_008750.1 1414370 1419139 R KEGG: eba:ebA5435 conserved hypothetical protein, probable DNA/RNA helicase; hypothetical protein complement(1414370..1419139) Shewanella sp. W3-18-1 4659427 YP_962646.1 CDS Sputw3181_1249 NC_008750.1 1419801 1420775 D KEGG: cps:CPS_1152 hypothetical protein; hypothetical protein 1419801..1420775 Shewanella sp. W3-18-1 4659507 YP_962647.1 CDS Sputw3181_1250 NC_008750.1 1420831 1421895 D catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 1420831..1421895 Shewanella sp. W3-18-1 4659512 YP_962648.1 CDS Sputw3181_1251 NC_008750.1 1422077 1423783 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(1422077..1423783) Shewanella sp. W3-18-1 4659150 YP_962649.1 CDS Sputw3181_1252 NC_008750.1 1423857 1424969 R catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase complement(1423857..1424969) Shewanella sp. W3-18-1 4659545 YP_962650.1 CDS mazG NC_008750.1 1425506 1426432 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1425506..1426432 Shewanella sp. W3-18-1 4659660 YP_962651.1 CDS pyrG NC_008750.1 1426549 1428186 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1426549..1428186 Shewanella sp. W3-18-1 4659670 YP_962652.1 CDS eno NC_008750.1 1428392 1429687 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1428392..1429687 Shewanella sp. W3-18-1 4659616 YP_962653.1 CDS Sputw3181_1256 NC_008750.1 1429787 1430086 D PFAM: Septum formation initiator; KEGG: shm:Shewmr7_1187 septum formation initiator; septum formation initiator 1429787..1430086 Shewanella sp. W3-18-1 4659653 YP_962654.1 CDS ispD NC_008750.1 1430095 1430856 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1430095..1430856 Shewanella sp. W3-18-1 4660243 YP_962655.1 CDS ispF NC_008750.1 1430897 1431382 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 1430897..1431382 Shewanella sp. W3-18-1 4659878 YP_962656.1 CDS Sputw3181_1259 NC_008750.1 1431404 1432486 D PFAM: tRNA pseudouridine synthase D, TruD; KEGG: shm:Shewmr7_1190 pseudouridylate synthase; pseudouridylate synthase 1431404..1432486 Shewanella sp. W3-18-1 4659639 YP_962657.1 CDS surE NC_008750.1 1432483 1433232 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1432483..1433232 Shewanella sp. W3-18-1 4659557 YP_962658.1 CDS Sputw3181_1261 NC_008750.1 1433229 1433864 D KEGG: son:SO3434 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1433229..1433864 Shewanella sp. W3-18-1 4659930 YP_962659.1 CDS Sputw3181_1262 NC_008750.1 1433957 1434841 D PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: shm:Shewmr7_1193 peptidase M23B; peptidase M23B 1433957..1434841 Shewanella sp. W3-18-1 4660113 YP_962660.1 CDS Sputw3181_1263 NC_008750.1 1434923 1435903 D TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: son:SO3432 RNA polymerase sigma-38 factor; RpoD family RNA polymerase sigma factor 1434923..1435903 Shewanella sp. W3-18-1 4660117 YP_962661.1 CDS Sputw3181_1264 NC_008750.1 1436000 1438570 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1436000..1438570) Shewanella sp. W3-18-1 4659844 YP_962662.1 CDS recA NC_008750.1 1438954 1440027 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1438954..1440027 Shewanella sp. W3-18-1 4660211 YP_962663.1 CDS Sputw3181_1266 NC_008750.1 1440102 1440515 D PFAM: regulatory protein RecX; KEGG: shm:Shewmr7_1197 regulatory protein RecX; regulatory protein RecX 1440102..1440515 Shewanella sp. W3-18-1 4660219 YP_962664.1 CDS alaS NC_008750.1 1440802 1443480 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1440802..1443480 Shewanella sp. W3-18-1 4660991 YP_962665.1 CDS Sputw3181_1268 NC_008750.1 1443490 1444746 D KEGG: shm:Shewmr7_1199 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; aspartate kinase 1443490..1444746 Shewanella sp. W3-18-1 4660257 YP_962666.1 CDS Sputw3181_1269 NC_008750.1 1444865 1445062 D affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1444865..1445062 Shewanella sp. W3-18-1 4660190 YP_962667.1 CDS valS NC_008750.1 1446602 1449478 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1446602..1449478) Shewanella sp. W3-18-1 4657835 YP_962668.1 CDS Sputw3181_1271 NC_008750.1 1449494 1450024 R PFAM: DNA polymerase III chi subunit, HolC; KEGG: she:Shewmr4_1131 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit, HolC complement(1449494..1450024) Shewanella sp. W3-18-1 4660474 YP_962669.1 CDS Sputw3181_1272 NC_008750.1 1451238 1451597 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shm:Shewmr7_1203 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA complement(1451238..1451597) Shewanella sp. W3-18-1 4660205 YP_962670.1 CDS Sputw3181_1273 NC_008750.1 1451895 1452587 D PFAM: cytochrome B561; KEGG: she:Shewmr4_1133 cytochrome b561; cytochrome B561 1451895..1452587 Shewanella sp. W3-18-1 4660497 YP_962671.1 CDS Sputw3181_1274 NC_008750.1 1452687 1453136 R PFAM: cytochrome c, class II; KEGG: shm:Shewmr7_1205 cytochrome c, class II; cytochrome c, class II complement(1452687..1453136) Shewanella sp. W3-18-1 4660501 YP_962672.1 CDS Sputw3181_1275 NC_008750.1 1453325 1453600 D TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: son:SO3419 trp operon repressor; Trp operon repressor 1453325..1453600 Shewanella sp. W3-18-1 4660636 YP_962673.1 CDS Sputw3181_1276 NC_008750.1 1453747 1454403 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3417 peptidyl-prolyl cis-trans isomerase SlyD; peptidylprolyl isomerase, FKBP-type complement(1453747..1454403) Shewanella sp. W3-18-1 4660682 YP_962674.1 CDS thrA NC_008750.1 1455045 1457513 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1455045..1457513 Shewanella sp. W3-18-1 4660762 YP_962675.1 CDS Sputw3181_1278 NC_008750.1 1457510 1458472 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1457510..1458472 Shewanella sp. W3-18-1 4660911 YP_962676.1 CDS Sputw3181_1279 NC_008750.1 1458543 1459826 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1458543..1459826 Shewanella sp. W3-18-1 4660994 YP_962677.1 CDS Sputw3181_1280 NC_008750.1 1460050 1460904 D SMART: extracellular solute-binding protein, family 3; KEGG: son:SO3412 extracellular solute-binding proteins, family 3 protein; extracellular solute-binding protein 1460050..1460904 Shewanella sp. W3-18-1 4660934 YP_962678.1 CDS Sputw3181_1281 NC_008750.1 1461180 1464464 D PFAM: peptidase S41; WD40 domain protein beta Propeller; SMART: PDZ/DHR/GLGF domain protein; KEGG: son:SO3411 protease, putative; peptidase S41 1461180..1464464 Shewanella sp. W3-18-1 4661015 YP_962679.1 CDS Sputw3181_1282 NC_008750.1 1464587 1465024 R PFAM: OsmC family protein; KEGG: son:SO3409 OsmC/Ohr family protein; OsmC family protein complement(1464587..1465024) Shewanella sp. W3-18-1 4661828 YP_962680.1 CDS Sputw3181_1283 NC_008750.1 1465221 1465577 R KEGG: she:Shewmr4_1146 hypothetical protein; hypothetical protein complement(1465221..1465577) Shewanella sp. W3-18-1 4661526 YP_962681.1 CDS Sputw3181_1284 NC_008750.1 1465574 1467238 R PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO3407 hypothetical protein; PepSY-associated TM helix domain-containing protein complement(1465574..1467238) Shewanella sp. W3-18-1 4661421 YP_962682.1 CDS Sputw3181_1285 NC_008750.1 1467243 1467611 R KEGG: shm:Shewmr7_1219 hypothetical protein; hypothetical protein complement(1467243..1467611) Shewanella sp. W3-18-1 4661297 YP_962683.1 CDS Sputw3181_1286 NC_008750.1 1468034 1469650 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: she:Shewmr4_1149 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer 1468034..1469650 Shewanella sp. W3-18-1 4661265 YP_962684.1 CDS Sputw3181_1287 NC_008750.1 1469892 1470248 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shm:Shewmr7_1221 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA 1469892..1470248 Shewanella sp. W3-18-1 4660714 YP_962685.1 CDS Sputw3181_1288 NC_008750.1 1470346 1471068 R PFAM: protein of unknown function DUF28; KEGG: son:SO3401 hypothetical protein; hypothetical protein complement(1470346..1471068) Shewanella sp. W3-18-1 4660711 YP_962686.1 CDS Sputw3181_1289 NC_008750.1 1471490 1473058 D PFAM: chemotaxis sensory transducer; KEGG: shm:Shewmr7_1226 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1471490..1473058 Shewanella sp. W3-18-1 4660967 YP_962687.1 CDS Sputw3181_1290 NC_008750.1 1473378 1473617 D KEGG: shm:Shewmr7_1227 hypothetical protein; hypothetical protein 1473378..1473617 Shewanella sp. W3-18-1 4660647 YP_962688.1 CDS Sputw3181_1291 NC_008750.1 1473685 1474266 R PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_1228 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1473685..1474266) Shewanella sp. W3-18-1 4660378 YP_962689.1 CDS Sputw3181_1292 NC_008750.1 1474400 1475467 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: she:Shewmr4_1158 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1474400..1475467 Shewanella sp. W3-18-1 4660585 YP_962690.1 CDS Sputw3181_1293 NC_008750.1 1475558 1477990 R KEGG: shm:Shewmr7_1230 peptidase S16, lon domain protein; peptidase S16, lon domain-containing protein complement(1475558..1477990) Shewanella sp. W3-18-1 4660577 YP_962691.1 CDS Sputw3181_1294 NC_008750.1 1478300 1479541 D PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO3388 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 1478300..1479541 Shewanella sp. W3-18-1 4660365 YP_962692.1 CDS Sputw3181_1295 NC_008750.1 1479650 1480153 R KEGG: she:Shewmr4_1162 hypothetical protein; hypothetical protein complement(1479650..1480153) Shewanella sp. W3-18-1 4660569 YP_962693.1 CDS Sputw3181_1296 NC_008750.1 1480337 1481290 D PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: shm:Shewmr7_1234 protein of unknown function DUF1722; hypothetical protein 1480337..1481290 Shewanella sp. W3-18-1 4660321 YP_962694.1 CDS Sputw3181_1297 NC_008750.1 1481333 1482313 D PFAM: regulatory protein, MerR; KEGG: son:SO3385 transcriptional regulator, MerR family; MerR family transcriptional regulator 1481333..1482313 Shewanella sp. W3-18-1 4660485 YP_962695.1 CDS Sputw3181_1298 NC_008750.1 1482351 1483832 D PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: she:Shewmr4_1165 deoxyribodipyrimidine photo-lyase; deoxyribodipyrimidine photo-lyase 1482351..1483832 Shewanella sp. W3-18-1 4660479 YP_962696.1 CDS Sputw3181_1299 NC_008750.1 1483858 1484295 D KEGG: shm:Shewmr7_1237 transcriptional regulator-related protein; transcriptional regulator-like protein 1483858..1484295 Shewanella sp. W3-18-1 4659821 YP_962697.1 CDS Sputw3181_1300 NC_008750.1 1484295 1485122 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: she:Shewmr4_1167 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1484295..1485122 Shewanella sp. W3-18-1 4659996 YP_962698.1 CDS Sputw3181_1301 NC_008750.1 1485119 1486369 D PFAM: amine oxidase; KEGG: shm:Shewmr7_1239 amine oxidase; amine oxidase 1485119..1486369 Shewanella sp. W3-18-1 4659975 YP_962699.1 CDS Sputw3181_1302 NC_008750.1 1486366 1487175 D PFAM: protein of unknown function DUF1365; KEGG: she:Shewmr4_1169 protein of unknown function DUF1365; hypothetical protein 1486366..1487175 Shewanella sp. W3-18-1 4659967 YP_962700.1 CDS Sputw3181_1303 NC_008750.1 1487177 1488430 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_1241 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1487177..1488430 Shewanella sp. W3-18-1 4659961 YP_962701.1 CDS Sputw3181_1304 NC_008750.1 1488431 1489084 D KEGG: son:SO3378 hypothetical protein; hypothetical protein 1488431..1489084 Shewanella sp. W3-18-1 4659801 YP_962702.1 CDS Sputw3181_1305 NC_008750.1 1489088 1489660 D KEGG: son:SO3377 hypothetical protein; hypothetical protein 1489088..1489660 Shewanella sp. W3-18-1 4659884 YP_962703.1 CDS Sputw3181_1306 NC_008750.1 1489648 1490193 D KEGG: shm:Shewmr7_1244 hypothetical protein; hypothetical protein 1489648..1490193 Shewanella sp. W3-18-1 4659883 YP_962704.1 CDS Sputw3181_1307 NC_008750.1 1490314 1490658 R KEGG: shm:Shewmr7_1246 hypothetical protein; hypothetical protein complement(1490314..1490658) Shewanella sp. W3-18-1 4659123 YP_962705.1 CDS Sputw3181_1308 NC_008750.1 1492586 1493137 D PFAM: cytochrome B561; KEGG: she:Shewmr4_1177 cytochrome b561; cytochrome B561 1492586..1493137 Shewanella sp. W3-18-1 4658058 YP_962706.1 CDS Sputw3181_1309 NC_008750.1 1493142 1493717 D PFAM: YceI family protein; KEGG: son:SO3370 hypothetical protein; hypothetical protein 1493142..1493717 Shewanella sp. W3-18-1 4659289 YP_962707.1 CDS Sputw3181_1310 NC_008750.1 1493805 1494083 R PFAM: Fe(II) trafficking protein YggX; KEGG: son:SO3369 hypothetical protein; hypothetical protein complement(1493805..1494083) Shewanella sp. W3-18-1 4661712 YP_962708.1 CDS Sputw3181_1311 NC_008750.1 1494086 1495174 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: shm:Shewmr7_1251 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase complement(1494086..1495174) Shewanella sp. W3-18-1 4659093 YP_962709.1 CDS trmB NC_008750.1 1495375 1496091 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1495375..1496091 Shewanella sp. W3-18-1 4659073 YP_962710.1 CDS Sputw3181_1313 NC_008750.1 1496140 1496466 D PFAM: protein of unknown function DUF469; KEGG: son:SO3366 hypothetical protein; hypothetical protein 1496140..1496466 Shewanella sp. W3-18-1 4659228 YP_962711.1 CDS Sputw3181_1314 NC_008750.1 1496466 1497380 D catalyzes the formation of glutamate from glutamine; glutaminase 1496466..1497380 Shewanella sp. W3-18-1 4659211 YP_962712.1 CDS Sputw3181_1315 NC_008750.1 1497560 1498381 D KEGG: shm:Shewmr7_1255 hypothetical protein; hypothetical protein 1497560..1498381 Shewanella sp. W3-18-1 4659206 YP_962713.1 CDS Sputw3181_1316 NC_008750.1 1498694 1499707 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1256 transcriptional regulator, LysR family; LysR family transcriptional regulator 1498694..1499707 Shewanella sp. W3-18-1 4660347 YP_962714.1 CDS Sputw3181_1317 NC_008750.1 1500369 1502255 R PFAM: protein of unknown function DUF885; KEGG: she:Shewmr4_1186 protein of unknown function DUF885; hypothetical protein complement(1500369..1502255) Shewanella sp. W3-18-1 4658828 YP_962715.1 CDS Sputw3181_1318 NC_008750.1 1502409 1503572 R KEGG: she:Shewmr4_1187 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase complement(1502409..1503572) Shewanella sp. W3-18-1 4658818 YP_962716.1 CDS Sputw3181_1319 NC_008750.1 1503572 1504189 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase complement(1503572..1504189) Shewanella sp. W3-18-1 4658459 YP_962717.1 CDS Sputw3181_1320 NC_008750.1 1504300 1504734 R KEGG: shm:Shewmr7_1260 hypothetical protein; hypothetical protein complement(1504300..1504734) Shewanella sp. W3-18-1 4661883 YP_962718.1 CDS Sputw3181_1321 NC_008750.1 1504812 1505102 R PFAM: protein of unknown function DUF167; KEGG: son:SO3356 hypothetical protein; hypothetical protein complement(1504812..1505102) Shewanella sp. W3-18-1 4658570 YP_962719.1 CDS Sputw3181_1322 NC_008750.1 1505102 1505650 R PFAM: protein of unknown function YGGT; KEGG: she:Shewmr4_1191 protein of unknown function YGGT; hypothetical protein complement(1505102..1505650) Shewanella sp. W3-18-1 4658738 YP_962720.1 CDS Sputw3181_1323 NC_008750.1 1505697 1506515 R KEGG: son:SO3354 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase complement(1505697..1506515) Shewanella sp. W3-18-1 4658725 YP_962721.1 CDS Sputw3181_1324 NC_008750.1 1506696 1507394 R PFAM: alanine racemase domain protein; KEGG: shm:Shewmr7_1264 protein of unknown function UPF0001; alanine racemase domain-containing protein complement(1506696..1507394) Shewanella sp. W3-18-1 4658557 YP_962722.1 CDS Sputw3181_1325 NC_008750.1 1507430 1508467 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: son:SO3351 twitching motility protein PilT; twitching motility protein 1507430..1508467 Shewanella sp. W3-18-1 4658695 YP_962723.1 CDS Sputw3181_1326 NC_008750.1 1508477 1509589 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: shm:Shewmr7_1266 twitching motility protein; twitching motility protein 1508477..1509589 Shewanella sp. W3-18-1 4658692 YP_962724.1 CDS Sputw3181_1327 NC_008750.1 1509728 1510267 D PFAM: glutathione peroxidase; KEGG: shm:Shewmr7_1267 glutathione peroxidase; glutathione peroxidase 1509728..1510267 Shewanella sp. W3-18-1 4661354 YP_962725.1 CDS Sputw3181_1328 NC_008750.1 1510300 1511313 D PFAM: ferrochelatase; KEGG: shm:Shewmr7_1268 ferrochelatase; ferrochelatase 1510300..1511313 Shewanella sp. W3-18-1 4658655 YP_962726.1 CDS Sputw3181_1329 NC_008750.1 1511375 1511800 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1511375..1511800) Shewanella sp. W3-18-1 4658646 YP_962727.1 CDS Sputw3181_1330 NC_008750.1 1511832 1512395 R PFAM: protein of unknown function DUF179; KEGG: son:SO3346 putative transcriptional regulator; hypothetical protein complement(1511832..1512395) Shewanella sp. W3-18-1 4657735 YP_962728.1 CDS Sputw3181_1331 NC_008750.1 1512508 1512837 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(1512508..1512837) Shewanella sp. W3-18-1 4657734 YP_962729.1 CDS Sputw3181_1332 NC_008750.1 1513003 1513317 R KEGG: shm:Shewmr7_1272 hypothetical protein; hypothetical protein complement(1513003..1513317) Shewanella sp. W3-18-1 4657725 YP_962730.1 CDS Sputw3181_1333 NC_008750.1 1513496 1514056 D KEGG: son:SO3343 hypothetical protein; hypothetical protein 1513496..1514056 Shewanella sp. W3-18-1 4658091 YP_962731.1 CDS Sputw3181_1334 NC_008750.1 1514387 1515040 D PFAM: protein of unknown function UPF0126; KEGG: shm:Shewmr7_1274 protein of unknown function UPF0126; hypothetical protein 1514387..1515040 Shewanella sp. W3-18-1 4657715 YP_962732.1 CDS Sputw3181_1335 NC_008750.1 1515088 1515681 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_1275 redoxin domain protein; redoxin domain-containing protein complement(1515088..1515681) Shewanella sp. W3-18-1 4658026 YP_962733.1 CDS Sputw3181_1336 NC_008750.1 1515790 1516617 R PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_1276 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(1515790..1516617) Shewanella sp. W3-18-1 4657987 YP_962734.1 CDS Sputw3181_1337 NC_008750.1 1516652 1517242 R PFAM: OmpA/MotB domain protein; KEGG: son:SO3339 OmpA family protein; OmpA/MotB domain-containing protein complement(1516652..1517242) Shewanella sp. W3-18-1 4657981 YP_962735.1 CDS Sputw3181_1338 NC_008750.1 1517567 1518580 D PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: she:Shewmr4_1207 threonine aldolase; threonine aldolase 1517567..1518580 Shewanella sp. W3-18-1 4657913 YP_962736.1 CDS Sputw3181_1339 NC_008750.1 1518985 1519809 R PFAM: protein of unknown function DUF980; KEGG: she:Shewmr4_1210 protein of unknown function DUF980; hypothetical protein complement(1518985..1519809) Shewanella sp. W3-18-1 4657898 YP_962737.1 CDS Sputw3181_1340 NC_008750.1 1519909 1521645 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO3334 GGDEF family protein; diguanylate cyclase complement(1519909..1521645) Shewanella sp. W3-18-1 4657878 YP_962738.1 CDS Sputw3181_1341 NC_008750.1 1521642 1523048 R PFAM: extracellular solute-binding protein, family 1; KEGG: she:Shewmr4_1212 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1521642..1523048) Shewanella sp. W3-18-1 4660980 YP_962739.1 CDS Sputw3181_1342 NC_008750.1 1523382 1523840 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3328 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1523382..1523840 Shewanella sp. W3-18-1 4657674 YP_962740.1 CDS Sputw3181_1343 NC_008750.1 1523998 1524207 D KEGG: she:Shewmr4_1216 hypothetical protein; hypothetical protein 1523998..1524207 Shewanella sp. W3-18-1 4657860 YP_962741.1 CDS Sputw3181_1344 NC_008750.1 1524334 1524636 D KEGG: shm:Shewmr7_1288 NrfJ-related protein; NrfJ-like protein 1524334..1524636 Shewanella sp. W3-18-1 4661043 YP_962742.1 CDS Sputw3181_1345 NC_008750.1 1524806 1525318 D PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1289 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1524806..1525318 Shewanella sp. W3-18-1 4658371 YP_962743.1 CDS Sputw3181_1346 NC_008750.1 1525379 1525912 D PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_1219 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1525379..1525912 Shewanella sp. W3-18-1 4658464 YP_962744.1 CDS Sputw3181_1347 NC_008750.1 1526042 1526737 R PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: shm:Shewmr7_1291 pirin domain protein domain protein; pirin domain-containing protein complement(1526042..1526737) Shewanella sp. W3-18-1 4657802 YP_962745.1 CDS Sputw3181_1348 NC_008750.1 1526749 1527192 R PFAM: DoxX family protein; KEGG: shm:Shewmr7_1292 DoxX family protein; DoxX family protein complement(1526749..1527192) Shewanella sp. W3-18-1 4657854 YP_962746.1 CDS Sputw3181_1349 NC_008750.1 1527359 1528252 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_1222 transcriptional regulator, LysR family; LysR family transcriptional regulator 1527359..1528252 Shewanella sp. W3-18-1 4657872 YP_962747.1 CDS Sputw3181_1350 NC_008750.1 1528282 1530027 R PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: shm:Shewmr7_1294 metallophosphoesterase; 5'-nucleotidase domain-containing protein complement(1528282..1530027) Shewanella sp. W3-18-1 4657897 YP_962748.1 CDS Sputw3181_1351 NC_008750.1 1530167 1531258 R PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: shm:Shewmr7_1295 protein of unknown function DUF21; hypothetical protein complement(1530167..1531258) Shewanella sp. W3-18-1 4657908 YP_962749.1 CDS Sputw3181_1352 NC_008750.1 1531325 1532524 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1531325..1532524 Shewanella sp. W3-18-1 4657933 YP_962750.1 CDS Sputw3181_1353 NC_008750.1 1532557 1533345 D KEGG: she:Shewmr4_1226 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1532557..1533345 Shewanella sp. W3-18-1 4658062 YP_962751.1 CDS Sputw3181_1354 NC_008750.1 1533342 1534427 D KEGG: she:Shewmr4_1227 hypothetical protein; hypothetical protein 1533342..1534427 Shewanella sp. W3-18-1 4658081 YP_962752.1 CDS ispG NC_008750.1 1534477 1535592 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1534477..1535592 Shewanella sp. W3-18-1 4658124 YP_962753.1 CDS hisS NC_008750.1 1535723 1537000 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1535723..1537000 Shewanella sp. W3-18-1 4658165 YP_962754.1 CDS Sputw3181_1357 NC_008750.1 1537014 1537634 D KEGG: shm:Shewmr7_1301 hypothetical protein; hypothetical protein 1537014..1537634 Shewanella sp. W3-18-1 4658204 YP_962755.1 CDS Sputw3181_1358 NC_008750.1 1537646 1538833 D with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1537646..1538833 Shewanella sp. W3-18-1 4658208 YP_962756.1 CDS engA NC_008750.1 1538913 1540379 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1538913..1540379 Shewanella sp. W3-18-1 4658215 YP_962757.1 CDS xseA NC_008750.1 1540462 1541862 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1540462..1541862) Shewanella sp. W3-18-1 4658225 YP_962758.1 CDS Sputw3181_1361 NC_008750.1 1541929 1543395 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1541929..1543395 Shewanella sp. W3-18-1 4658231 YP_962759.1 CDS guaA NC_008750.1 1543513 1545090 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1543513..1545090 Shewanella sp. W3-18-1 4658238 YP_962760.1 CDS Sputw3181_1363 NC_008750.1 1545257 1545751 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: she:Shewmr4_1236 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 1545257..1545751 Shewanella sp. W3-18-1 4658247 YP_962761.1 CDS Sputw3181_1364 NC_008750.1 1546209 1547642 R YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase complement(1546209..1547642) Shewanella sp. W3-18-1 4657750 YP_962762.1 CDS Sputw3181_1365 NC_008750.1 1547921 1551802 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1547921..1551802 Shewanella sp. W3-18-1 4657751 YP_962763.1 CDS Sputw3181_1366 NC_008750.1 1553046 1554602 D PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: shm:Shewmr7_1310 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 1553046..1554602 Shewanella sp. W3-18-1 4658273 YP_962764.1 CDS Sputw3181_1367 NC_008750.1 1554618 1555757 D TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: son:SO3285 cytochrome bd-I oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 1554618..1555757 Shewanella sp. W3-18-1 4658287 YP_962765.1 CDS Sputw3181_1368 NC_008750.1 1555787 1555903 D TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: shm:Shewmr7_1312 cyd operon protein YbgT; cyd operon protein YbgT 1555787..1555903 Shewanella sp. W3-18-1 4658306 YP_962766.1 CDS Sputw3181_1369 NC_008750.1 1556108 1556344 D KEGG: she:Shewmr4_1960 hypothetical protein; hypothetical protein 1556108..1556344 Shewanella sp. W3-18-1 4658323 YP_962767.1 CDS Sputw3181_1370 NC_008750.1 1556411 1558414 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_1243 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1556411..1558414) Shewanella sp. W3-18-1 4658330 YP_962768.1 CDS Sputw3181_1371 NC_008750.1 1558640 1561717 R PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1245 acriflavin resistance protein; acriflavin resistance protein complement(1558640..1561717) Shewanella sp. W3-18-1 4658448 YP_962769.1 CDS Sputw3181_1372 NC_008750.1 1561717 1562829 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3278 hypothetical protein; RND family efflux transporter MFP subunit complement(1561717..1562829) Shewanella sp. W3-18-1 4658445 YP_962770.1 CDS Sputw3181_1373 NC_008750.1 1562968 1563597 D PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_1317 transcriptional regulator, TetR family; TetR family transcriptional regulator 1562968..1563597 Shewanella sp. W3-18-1 4658438 YP_962771.1 CDS Sputw3181_1374 NC_008750.1 1563715 1564659 D KEGG: she:Shewmr4_1248 hypothetical protein; hypothetical protein 1563715..1564659 Shewanella sp. W3-18-1 4658423 YP_962772.1 CDS Sputw3181_1375 NC_008750.1 1564678 1565238 R KEGG: shm:Shewmr7_1319 hypothetical protein; hypothetical protein complement(1564678..1565238) Shewanella sp. W3-18-1 4658444 YP_962773.1 CDS Sputw3181_1376 NC_008750.1 1565277 1565756 R KEGG: shm:Shewmr7_1320 hypothetical protein; hypothetical protein complement(1565277..1565756) Shewanella sp. W3-18-1 4658401 YP_962774.1 CDS Sputw3181_1377 NC_008750.1 1565872 1568337 R PFAM: protein of unknown function DUF115; KEGG: son:SO3273 hypothetical protein; hypothetical protein complement(1565872..1568337) Shewanella sp. W3-18-1 4658997 YP_962775.1 CDS Sputw3181_1378 NC_008750.1 1568718 1569713 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: son:SO3271 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD 1568718..1569713 Shewanella sp. W3-18-1 4658639 YP_962776.1 CDS Sputw3181_1379 NC_008750.1 1569710 1570858 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: son:SO3270 polysaccharide biosynthesis protein; DegT/DnrJ/EryC1/StrS aminotransferase 1569710..1570858 Shewanella sp. W3-18-1 4658657 YP_962777.1 CDS Sputw3181_1380 NC_008750.1 1570855 1571559 D PFAM: acylneuraminate cytidylyltransferase; KEGG: par:Psyc_0656 putative acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase 1570855..1571559 Shewanella sp. W3-18-1 4658442 YP_962778.1 CDS Sputw3181_1381 NC_008750.1 1571556 1572671 D KEGG: pfl:PFL_1624 FlaR protein (FlaR); FlaR protein (FlaR) 1571556..1572671 Shewanella sp. W3-18-1 4658718 YP_962779.1 CDS Sputw3181_1382 NC_008750.1 1572675 1573724 D PFAM: N-acetylneuraminic acid synthase, N-terminal domain; SAF domain; KEGG: pfl:PFL_1625 NeuB family protein; N-acylneuraminate-9-phosphate synthase 1572675..1573724 Shewanella sp. W3-18-1 4658740 YP_962780.1 CDS Sputw3181_1383 NC_008750.1 1573706 1574305 D KEGG: sus:Acid_6945 GCN5-related N-acetyltransferase; hypothetical protein 1573706..1574305 Shewanella sp. W3-18-1 4658747 YP_962781.1 CDS Sputw3181_1384 NC_008750.1 1574302 1574532 D KEGG: sus:Acid_1361 acyl carrier protein; acyl carrier protein 1574302..1574532 Shewanella sp. W3-18-1 4658783 YP_962782.1 CDS Sputw3181_1385 NC_008750.1 1574532 1575278 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sus:Acid_1362 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1574532..1575278 Shewanella sp. W3-18-1 4658831 YP_962783.1 CDS Sputw3181_1386 NC_008750.1 1575311 1576672 D PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro07030 possible acyl-CoA synthetase; AMP-dependent synthetase and ligase 1575311..1576672 Shewanella sp. W3-18-1 4658876 YP_962784.1 CDS Sputw3181_1387 NC_008750.1 1576669 1577724 D PFAM: acyl-protein synthetase, LuxE; KEGG: sus:Acid_1364 acyl-protein synthetase, LuxE; acyl-protein synthetase, LuxE 1576669..1577724 Shewanella sp. W3-18-1 4658909 YP_962785.1 CDS Sputw3181_1388 NC_008750.1 1577703 1578893 D KEGG: sus:Acid_1365 hypothetical protein; hypothetical protein 1577703..1578893 Shewanella sp. W3-18-1 4658940 YP_962786.1 CDS Sputw3181_1389 NC_008750.1 1578886 1579731 D KEGG: bfr:BF2579 putative cholinephosphotransferase; hypothetical protein 1578886..1579731 Shewanella sp. W3-18-1 4658942 YP_962787.1 CDS Sputw3181_1390 NC_008750.1 1579747 1580487 D PFAM: Methyltransferase type 12; KEGG: pau:PA14_50330 hypothetical protein; type 12 methyltransferase 1579747..1580487 Shewanella sp. W3-18-1 4658947 YP_962788.1 CDS Sputw3181_1391 NC_008750.1 1580594 1581643 R PFAM: Integrase, catalytic region; KEGG: sdn:Sden_2168 integrase, catalytic region; integrase catalytic subunit complement(1580594..1581643) Shewanella sp. W3-18-1 4658987 YP_962789.1 CDS Sputw3181_1392 NC_008750.1 1581649 1582149 R PFAM: transposase IS3/IS911 family protein; KEGG: sdn:Sden_2169 hypothetical protein; transposase IS3/IS911 family protein complement(1581649..1582149) Shewanella sp. W3-18-1 4658970 YP_962790.1 CDS Sputw3181_1393 NC_008750.1 1582255 1583865 R KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase complement(1582255..1583865) Shewanella sp. W3-18-1 4659665 YP_962791.1 CDS Sputw3181_1394 NC_008750.1 1584031 1584537 D KEGG: pau:PA14_50320 hypothetical protein; hypothetical protein 1584031..1584537 Shewanella sp. W3-18-1 4659174 YP_962792.1 CDS Sputw3181_1395 NC_008750.1 1584534 1585160 D KEGG: pau:PA14_50310 possible sugar nucleotidyltransferase; putative sugar nucleotidyltransferase 1584534..1585160 Shewanella sp. W3-18-1 4659190 YP_962793.1 CDS Sputw3181_1396 NC_008750.1 1585209 1585502 R KEGG: son:SO3260 hypothetical protein; hypothetical protein complement(1585209..1585502) Shewanella sp. W3-18-1 4658980 YP_962794.1 CDS Sputw3181_1397 NC_008750.1 1585499 1586788 R KEGG: son:SO3259 hypothetical protein; hypothetical protein complement(1585499..1586788) Shewanella sp. W3-18-1 4659208 YP_962795.1 CDS Sputw3181_1398 NC_008750.1 1586969 1588135 R KEGG: she:Shewmr4_1251 hypothetical protein; hypothetical protein complement(1586969..1588135) Shewanella sp. W3-18-1 4658245 YP_962796.1 CDS Sputw3181_1399 NC_008750.1 1588419 1589051 D KEGG: shm:Shewmr7_1322 hypothetical protein; hypothetical protein 1588419..1589051 Shewanella sp. W3-18-1 4659236 YP_962797.1 CDS Sputw3181_1400 NC_008750.1 1589048 1589497 D PFAM: protein of unknown function DUF400; KEGG: son:SO3256 hypothetical protein; hypothetical protein 1589048..1589497 Shewanella sp. W3-18-1 4659316 YP_962798.1 CDS Sputw3181_1401 NC_008750.1 1589854 1590279 R PFAM: FlgN family protein; KEGG: shm:Shewmr7_1324 FlgN family protein; FlgN family protein complement(1589854..1590279) Shewanella sp. W3-18-1 4659349 YP_962799.1 CDS Sputw3181_1402 NC_008750.1 1590282 1590605 R PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: shm:Shewmr7_1325 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM complement(1590282..1590605) Shewanella sp. W3-18-1 4659395 YP_962800.1 CDS flgA NC_008750.1 1590679 1591386 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1590679..1591386) Shewanella sp. W3-18-1 4659411 YP_962801.1 CDS Sputw3181_1404 NC_008750.1 1591591 1592511 D PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO3252 chemotaxis protein CheV; putative CheW protein 1591591..1592511 Shewanella sp. W3-18-1 4659428 YP_962802.1 CDS Sputw3181_1405 NC_008750.1 1592622 1593461 D PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 12; KEGG: son:SO3251 chemotaxis protein methyltransferase CheR; protein-glutamate O-methyltransferase 1592622..1593461 Shewanella sp. W3-18-1 4659472 YP_962803.1 CDS flgB NC_008750.1 1593606 1594010 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 1593606..1594010 Shewanella sp. W3-18-1 4659517 YP_962804.1 CDS flgC NC_008750.1 1594013 1594429 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1594013..1594429 Shewanella sp. W3-18-1 4659527 YP_962805.1 CDS flgD NC_008750.1 1594454 1595215 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1594454..1595215 Shewanella sp. W3-18-1 4659542 YP_962806.1 CDS flgE NC_008750.1 1595283 1596644 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1595283..1596644 Shewanella sp. W3-18-1 4659584 YP_962807.1 CDS flgF NC_008750.1 1596815 1597558 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1596815..1597558 Shewanella sp. W3-18-1 4659652 YP_962808.1 CDS flgG NC_008750.1 1597569 1598357 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1597569..1598357 Shewanella sp. W3-18-1 4659634 YP_962809.1 CDS flgH NC_008750.1 1598369 1599043 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 1598369..1599043 Shewanella sp. W3-18-1 4659554 YP_962810.1 CDS flgI NC_008750.1 1599055 1600146 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1599055..1600146 Shewanella sp. W3-18-1 4659807 YP_962811.1 CDS flgJ NC_008750.1 1600164 1601321 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1600164..1601321 Shewanella sp. W3-18-1 4660202 YP_962812.1 CDS Sputw3181_1415 NC_008750.1 1601362 1603287 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: shm:Shewmr7_1338 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 1601362..1603287 Shewanella sp. W3-18-1 4660232 YP_962813.1 CDS flgL NC_008750.1 1603299 1604510 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 1603299..1604510 Shewanella sp. W3-18-1 4659666 YP_962814.1 CDS Sputw3181_1417 NC_008750.1 1604613 1605434 D PFAM: flagellin domain protein; KEGG: sdn:Sden_1314 flagellin-like protein; flagellin domain-containing protein 1604613..1605434 Shewanella sp. W3-18-1 4659903 YP_962815.1 CDS Sputw3181_1418 NC_008750.1 1605697 1606512 D PFAM: flagellin domain protein; KEGG: sdn:Sden_1315 flagellin-like protein; flagellin domain-containing protein 1605697..1606512 Shewanella sp. W3-18-1 4659620 YP_962816.1 CDS Sputw3181_1419 NC_008750.1 1606658 1607047 D PFAM: flagellar protein FlaG protein; KEGG: son:SO3236 flagellin FlaG; flagellar protein FlaG protein 1606658..1607047 Shewanella sp. W3-18-1 4659919 YP_962817.1 CDS Sputw3181_1420 NC_008750.1 1607097 1608467 D PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: son:SO3235 flagellar hook-associated protein FliD; flagellar hook-associated 2 domain-containing protein 1607097..1608467 Shewanella sp. W3-18-1 4659574 YP_962818.1 CDS Sputw3181_1421 NC_008750.1 1608486 1608815 D KEGG: son:SO3234 hypothetical protein; hypothetical protein 1608486..1608815 Shewanella sp. W3-18-1 4659993 YP_962819.1 CDS fliS NC_008750.1 1608822 1609232 D flagellin specific chaperone; flagellar protein FliS 1608822..1609232 Shewanella sp. W3-18-1 4660075 YP_962820.1 CDS Sputw3181_1423 NC_008750.1 1609518 1610951 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; flagellar regulatory FleQ domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_1345 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 1609518..1610951 Shewanella sp. W3-18-1 4659840 YP_962821.1 CDS Sputw3181_1424 NC_008750.1 1611061 1612143 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: son:SO3231 flagellar regulatory protein B; PAS/PAC sensor signal transduction histidine kinase 1611061..1612143 Shewanella sp. W3-18-1 4660155 YP_962822.1 CDS Sputw3181_1425 NC_008750.1 1612136 1613476 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: she:Shewmr4_1280 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator 1612136..1613476 Shewanella sp. W3-18-1 4660160 YP_962823.1 CDS Sputw3181_1426 NC_008750.1 1613698 1614033 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: she:Shewmr4_1281 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE 1613698..1614033 Shewanella sp. W3-18-1 4660163 YP_962824.1 CDS fliF NC_008750.1 1614079 1615761 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1614079..1615761 Shewanella sp. W3-18-1 4660198 YP_962825.1 CDS fliG NC_008750.1 1615754 1616800 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1615754..1616800 Shewanella sp. W3-18-1 4659818 YP_962826.1 CDS fliH NC_008750.1 1616787 1617743 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1616787..1617743 Shewanella sp. W3-18-1 4660998 YP_962827.1 CDS fliI NC_008750.1 1617712 1619049 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1617712..1619049 Shewanella sp. W3-18-1 4660920 YP_962828.1 CDS Sputw3181_1431 NC_008750.1 1619061 1619504 D TIGRFAM: flagellar export protein FliJ; KEGG: shm:Shewmr7_1353 flagellar export protein FliJ; flagellar export protein FliJ 1619061..1619504 Shewanella sp. W3-18-1 4661011 YP_962829.1 CDS Sputw3181_1432 NC_008750.1 1619671 1621146 D PFAM: flagellar hook-length control protein; KEGG: son:SO3223 flagellar hook-length control protein FliK; flagellar hook-length control protein 1619671..1621146 Shewanella sp. W3-18-1 4660279 YP_962830.1 CDS fliL NC_008750.1 1621238 1621753 D interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1621238..1621753 Shewanella sp. W3-18-1 4660462 YP_962831.1 CDS fliM NC_008750.1 1621793 1622824 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1621793..1622824 Shewanella sp. W3-18-1 4660233 YP_962832.1 CDS fliN NC_008750.1 1622836 1623219 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1622836..1623219 Shewanella sp. W3-18-1 4660215 YP_962833.1 CDS Sputw3181_1436 NC_008750.1 1623246 1623665 D PFAM: flagellar biosynthesis protein, FliO; KEGG: she:Shewmr4_1291 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein, FliO 1623246..1623665 Shewanella sp. W3-18-1 4660197 YP_962834.1 CDS fliP NC_008750.1 1623662 1624408 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1623662..1624408 Shewanella sp. W3-18-1 4660503 YP_962835.1 CDS Sputw3181_1438 NC_008750.1 1624426 1624695 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: son:SO3217 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 1624426..1624695 Shewanella sp. W3-18-1 4660535 YP_962836.1 CDS fliR NC_008750.1 1624700 1625497 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1624700..1625497 Shewanella sp. W3-18-1 4660561 YP_962837.1 CDS flhB NC_008750.1 1625515 1626645 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1625515..1626645 Shewanella sp. W3-18-1 4660637 YP_962838.1 CDS flhA NC_008750.1 1626738 1628837 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1626738..1628837 Shewanella sp. W3-18-1 4660697 YP_962839.1 CDS flhF NC_008750.1 1628849 1630231 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1628849..1630231 Shewanella sp. W3-18-1 4660752 YP_962840.1 CDS Sputw3181_1443 NC_008750.1 1630236 1631117 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: shm:Shewmr7_1365 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1630236..1631117 Shewanella sp. W3-18-1 4660793 YP_962841.1 CDS fliA NC_008750.1 1631110 1631823 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1631110..1631823 Shewanella sp. W3-18-1 4660808 YP_962842.1 CDS Sputw3181_1445 NC_008750.1 1631883 1632254 D PFAM: response regulator receiver; KEGG: sfr:Sfri_1200 response regulator receiver protein; response regulator receiver protein 1631883..1632254 Shewanella sp. W3-18-1 4660815 YP_962843.1 CDS Sputw3181_1446 NC_008750.1 1632268 1633005 D PFAM: Chemotaxis phosphatase, CheZ; KEGG: shm:Shewmr7_1368 chemotaxis phosphatase, CheZ; chemotaxis phosphatase, CheZ 1632268..1633005 Shewanella sp. W3-18-1 4660822 YP_962844.1 CDS Sputw3181_1447 NC_008750.1 1633021 1635240 D PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: she:Shewmr4_1302 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 1633021..1635240 Shewanella sp. W3-18-1 4660829 YP_962845.1 CDS Sputw3181_1448 NC_008750.1 1635261 1636379 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1635261..1636379 Shewanella sp. W3-18-1 4660836 YP_962846.1 CDS Sputw3181_1449 NC_008750.1 1636402 1636836 D KEGG: she:Shewmr4_1304 hypothetical protein; hypothetical protein 1636402..1636836 Shewanella sp. W3-18-1 4660842 YP_962847.1 CDS Sputw3181_1450 NC_008750.1 1636894 1637685 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3204 ParA family protein; cobyrinic acid a,c-diamide synthase 1636894..1637685 Shewanella sp. W3-18-1 4660882 YP_962848.1 CDS Sputw3181_1451 NC_008750.1 1637669 1638661 D PFAM: CheW domain protein; KEGG: she:Shewmr4_1306 CheW protein; putative CheW protein 1637669..1638661 Shewanella sp. W3-18-1 4660935 YP_962849.1 CDS Sputw3181_1452 NC_008750.1 1638669 1639163 D PFAM: CheW domain protein; KEGG: shm:Shewmr7_1374 CheW protein; putative CheW protein 1638669..1639163 Shewanella sp. W3-18-1 4661544 YP_962850.1 CDS Sputw3181_1453 NC_008750.1 1639334 1639732 D KEGG: shm:Shewmr7_1375 hypothetical protein; hypothetical protein 1639334..1639732 Shewanella sp. W3-18-1 4661200 YP_962851.1 CDS Sputw3181_1454 NC_008750.1 1640178 1640489 R KEGG: shm:Shewmr7_1376 FlhB domain protein; FlhB domain-containing protein complement(1640178..1640489) Shewanella sp. W3-18-1 4661161 YP_962852.1 CDS Sputw3181_1455 NC_008750.1 1640530 1642449 R KEGG: she:Shewmr4_1310 hypothetical protein; hypothetical protein complement(1640530..1642449) Shewanella sp. W3-18-1 4661127 YP_962853.1 CDS Sputw3181_1456 NC_008750.1 1642680 1643462 D PFAM: VacJ family lipoprotein; KEGG: shm:Shewmr7_1378 VacJ family lipoprotein; VacJ family lipoprotein 1642680..1643462 Shewanella sp. W3-18-1 4661071 YP_962854.1 CDS Sputw3181_1457 NC_008750.1 1643582 1644712 D PFAM: response regulator receiver; KEGG: shm:Shewmr7_1379 response regulator receiver protein; response regulator receiver protein 1643582..1644712 Shewanella sp. W3-18-1 4661018 YP_962855.1 CDS Sputw3181_1459 NC_008750.1 1645629 1647134 R TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1380 amino acid/peptide transporter; amino acid/peptide transporter complement(1645629..1647134) Shewanella sp. W3-18-1 4658386 YP_962856.1 CDS Sputw3181_1460 NC_008750.1 1647608 1648114 D KEGG: son:SO3194 transcriptional activator rfaH, putative; TIGRFAM: transcriptional activator RfaH; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; NusG antitermination factor 1647608..1648114 Shewanella sp. W3-18-1 4661777 YP_962857.1 CDS Sputw3181_1461 NC_008750.1 1650150 1652636 D PFAM: polysaccharide export protein; KEGG: she:Shewmr4_1315 polysaccharide export protein; polysaccharide export protein 1650150..1652636 Shewanella sp. W3-18-1 4661742 YP_962858.1 CDS Sputw3181_1462 NC_008750.1 1652826 1653752 D PFAM: lipopolysaccharide biosynthesis; KEGG: shm:Shewmr7_1384 lipopolysaccharide biosynthesis; lipopolysaccharide biosynthesis protein 1652826..1653752 Shewanella sp. W3-18-1 4661697 YP_962859.1 CDS Sputw3181_1463 NC_008750.1 1653957 1655036 D NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase 1653957..1655036 Shewanella sp. W3-18-1 4661658 YP_962860.1 CDS Sputw3181_1464 NC_008750.1 1655105 1655968 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sfr:Sfri_2829 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1655105..1655968 Shewanella sp. W3-18-1 4661655 YP_962861.1 CDS Sputw3181_1465 NC_008750.1 1656059 1656985 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sdn:Sden_2661 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1656059..1656985 Shewanella sp. W3-18-1 4661594 YP_962862.1 CDS Sputw3181_1466 NC_008750.1 1657079 1657627 D KEGG: sbo:SBO_0865 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1657079..1657627 Shewanella sp. W3-18-1 4661575 YP_962863.1 CDS Sputw3181_1467 NC_008750.1 1657627 1659057 D PFAM: polysaccharide biosynthesis protein; KEGG: she:Shewmr4_1320 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1657627..1659057 Shewanella sp. W3-18-1 4661553 YP_962864.1 CDS Sputw3181_1468 NC_008750.1 1659095 1660204 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: she:Shewmr4_1321 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1659095..1660204 Shewanella sp. W3-18-1 4661529 YP_962865.1 CDS Sputw3181_1469 NC_008750.1 1660209 1660769 D PFAM: transferase hexapeptide repeat containing protein; KEGG: she:Shewmr4_1322 acetyltransferase RfbO, CysE/LacA/LpxA/NodL family; hexapaptide repeat-containing transferase 1660209..1660769 Shewanella sp. W3-18-1 4661524 YP_962866.1 CDS Sputw3181_1470 NC_008750.1 1660805 1661419 D PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN4077 chloramphenicol acetyltransferase; hexapaptide repeat-containing transferase 1660805..1661419 Shewanella sp. W3-18-1 4661489 YP_962867.1 CDS Sputw3181_1471 NC_008750.1 1661412 1662359 D PFAM: glycosyl transferase, family 2; KEGG: plt:Plut_0769 glycosyltransferase involved in cell wall biogenesis-like; glycosyl transferase family protein 1661412..1662359 Shewanella sp. W3-18-1 4661481 YP_962868.1 CDS Sputw3181_1472 NC_008750.1 1662511 1663761 R PFAM: transposase, IS4 family protein; KEGG: sak:SAK_2050 IS10R, transposase; transposase, IS4 family protein complement(1662511..1663761) Shewanella sp. W3-18-1 4661480 YP_962869.1 CDS Sputw3181_1473 NC_008750.1 1663835 1664164 D KEGG: shm:Shewmr7_1399 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 1663835..1664164 Shewanella sp. W3-18-1 4661337 YP_962870.1 CDS Sputw3181_1474 NC_008750.1 1664547 1664855 D PFAM: Excinuclease ABC, C subunit domain protein; KEGG: nme:NMB0047 putative endonuclease; excinuclease ABC subunit C 1664547..1664855 Shewanella sp. W3-18-1 4661441 YP_962871.1 CDS Sputw3181_1476 NC_008750.1 1667284 1667820 D KEGG: she:Shewmr4_1339 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1667284..1667820 Shewanella sp. W3-18-1 4658364 YP_962872.1 CDS Sputw3181_1477 NC_008750.1 1668548 1669621 D TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: shm:Shewmr7_1396 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 1668548..1669621 Shewanella sp. W3-18-1 4661371 YP_962873.1 CDS Sputw3181_1480 NC_008750.1 1670948 1671424 R hypothetical protein complement(1670948..1671424) Shewanella sp. W3-18-1 4661262 YP_962874.1 CDS Sputw3181_1481 NC_008750.1 1671445 1671891 R PFAM: copper resistance lipoprotein NlpE; KEGG: son:SO3163 lipoprotein; copper resistance lipoprotein NlpE complement(1671445..1671891) Shewanella sp. W3-18-1 4661294 YP_962875.1 CDS Sputw3181_1482 NC_008750.1 1672265 1673614 D PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; KEGG: son:SO3162 sensor histidine kinase; GAF sensor signal transduction histidine kinase 1672265..1673614 Shewanella sp. W3-18-1 4657691 YP_962876.1 CDS Sputw3181_1484 NC_008750.1 1674397 1674699 D PFAM: Excinuclease ABC, C subunit domain protein; KEGG: nme:NMB0047 putative endonuclease; excinuclease ABC subunit C 1674397..1674699 Shewanella sp. W3-18-1 4658623 YP_962877.1 CDS Sputw3181_1485 NC_008750.1 1675547 1677913 R PFAM: protein of unknown function DUF940, membrane lipoprotein putative; KEGG: shm:Shewmr7_1405 protein of unknown function DUF940, membrane lipoprotein putative; hypothetical protein complement(1675547..1677913) Shewanella sp. W3-18-1 4661213 YP_962878.1 CDS Sputw3181_1486 NC_008750.1 1677913 1678698 R PFAM: protein of unknown function DUF1017; KEGG: shm:Shewmr7_1406 protein of unknown function DUF1017; hypothetical protein complement(1677913..1678698) Shewanella sp. W3-18-1 4660643 YP_962879.1 CDS Sputw3181_1487 NC_008750.1 1678707 1679417 R KEGG: she:Shewmr4_1342 lipoprotein, putative; putative lipoprotein complement(1678707..1679417) Shewanella sp. W3-18-1 4660357 YP_962880.1 CDS Sputw3181_1488 NC_008750.1 1679565 1679816 R KEGG: she:Shewmr4_1343 hypothetical protein; hypothetical protein complement(1679565..1679816) Shewanella sp. W3-18-1 4660557 YP_962881.1 CDS Sputw3181_1489 NC_008750.1 1680300 1681424 D PFAM: Patatin; KEGG: shm:Shewmr7_1409 patatin; patatin 1680300..1681424 Shewanella sp. W3-18-1 4660895 YP_962882.1 CDS Sputw3181_1490 NC_008750.1 1681567 1683282 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1681567..1683282) Shewanella sp. W3-18-1 4660465 YP_962883.1 CDS Sputw3181_1491 NC_008750.1 1683496 1684125 R PFAM: transferase hexapeptide repeat containing protein; KEGG: shm:Shewmr7_1411 transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase complement(1683496..1684125) Shewanella sp. W3-18-1 4660269 YP_962884.1 CDS Sputw3181_1492 NC_008750.1 1684126 1684860 R PFAM: protein of unknown function UPF0066; KEGG: she:Shewmr4_1347 protein of unknown function UPF0066; hypothetical protein complement(1684126..1684860) Shewanella sp. W3-18-1 4660091 YP_962885.1 CDS Sputw3181_1493 NC_008750.1 1684999 1685379 R KEGG: shm:Shewmr7_1413 lipoprotein, putative; putative lipoprotein complement(1684999..1685379) Shewanella sp. W3-18-1 4659835 YP_962886.1 CDS Sputw3181_1494 NC_008750.1 1685456 1686772 R KEGG: son:SO3149 hypothetical protein; hypothetical protein complement(1685456..1686772) Shewanella sp. W3-18-1 4659781 YP_962887.1 CDS Sputw3181_1495 NC_008750.1 1686772 1689861 R PFAM: amidohydrolase; KEGG: shm:Shewmr7_1415 amidohydrolase; amidohydrolase complement(1686772..1689861) Shewanella sp. W3-18-1 4659798 YP_962888.1 CDS Sputw3181_1496 NC_008750.1 1690078 1690470 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: shm:Shewmr7_1416 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS complement(1690078..1690470) Shewanella sp. W3-18-1 4659954 YP_962889.1 CDS Sputw3181_1497 NC_008750.1 1690783 1691532 D PFAM: electron transfer flavoprotein beta-subunit; KEGG: shm:Shewmr7_1417 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 1690783..1691532 Shewanella sp. W3-18-1 4659783 YP_962890.1 CDS Sputw3181_1498 NC_008750.1 1691533 1692459 D PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: shm:Shewmr7_1418 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 1691533..1692459 Shewanella sp. W3-18-1 4659907 YP_962891.1 CDS Sputw3181_1499 NC_008750.1 1692832 1694400 D PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_1419 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 1692832..1694400 Shewanella sp. W3-18-1 4659764 YP_962892.1 CDS Sputw3181_1500 NC_008750.1 1694472 1696625 R PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: shm:Shewmr7_1420 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp complement(1694472..1696625) Shewanella sp. W3-18-1 4659423 YP_962893.1 CDS Sputw3181_1501 NC_008750.1 1696826 1698928 R KEGG: she:Shewmr4_1356 hypothetical protein; hypothetical protein complement(1696826..1698928) Shewanella sp. W3-18-1 4659370 YP_962894.1 CDS Sputw3181_1502 NC_008750.1 1699471 1700049 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1699471..1700049 Shewanella sp. W3-18-1 4661818 YP_962895.1 CDS Sputw3181_1503 NC_008750.1 1700152 1703223 D KEGG: she:Shewmr4_1358 hypothetical protein; hypothetical protein 1700152..1703223 Shewanella sp. W3-18-1 4659301 YP_962896.1 CDS Sputw3181_1504 NC_008750.1 1703330 1704709 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_1424 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator complement(1703330..1704709) Shewanella sp. W3-18-1 4659285 YP_962897.1 CDS Sputw3181_1505 NC_008750.1 1704706 1706517 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_1360 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1704706..1706517) Shewanella sp. W3-18-1 4659260 YP_962898.1 CDS Sputw3181_1506 NC_008750.1 1706629 1708026 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: shm:Shewmr7_1426 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(1706629..1708026) Shewanella sp. W3-18-1 4659077 YP_962899.1 CDS Sputw3181_1507 NC_008750.1 1708026 1708670 R PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: she:Shewmr4_1362 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(1708026..1708670) Shewanella sp. W3-18-1 4659205 YP_962900.1 CDS Sputw3181_1508 NC_008750.1 1708733 1709755 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: shm:Shewmr7_1428 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(1708733..1709755) Shewanella sp. W3-18-1 4659182 YP_962901.1 CDS gltX NC_008750.1 1711295 1712704 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1711295..1712704 Shewanella sp. W3-18-1 4658801 YP_962902.1 CDS Sputw3181_1510 NC_008750.1 1715173 1717002 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_1366 ABC transporter related; ABC transporter-like protein complement(1715173..1717002) Shewanella sp. W3-18-1 4659488 YP_962903.1 CDS Sputw3181_1511 NC_008750.1 1717487 1719178 D PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: son:SO3127 Ada regulatory protein, putative; alcohol dehydrogenase 1717487..1719178 Shewanella sp. W3-18-1 4658803 YP_962904.1 CDS Sputw3181_1512 NC_008750.1 1719224 1719781 D KEGG: shm:Shewmr7_1433 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 1719224..1719781 Shewanella sp. W3-18-1 4658548 YP_962905.1 CDS Sputw3181_1513 NC_008750.1 1719829 1721112 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_1434 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 1719829..1721112 Shewanella sp. W3-18-1 4658774 YP_962906.1 CDS Sputw3181_1514 NC_008750.1 1721177 1721647 D PFAM: Dual specificity protein phosphatase; KEGG: son:SO3124 tyrosine-specific protein phosphatase, putative; dual specificity protein phosphatase 1721177..1721647 Shewanella sp. W3-18-1 4658460 YP_962907.1 CDS Sputw3181_1515 NC_008750.1 1721779 1722678 D PFAM: response regulator receiver; CheW domain protein; KEGG: shm:Shewmr7_1437 response regulator receiver modulated CheW protein; putative CheW protein 1721779..1722678 Shewanella sp. W3-18-1 4661010 YP_962908.1 CDS Sputw3181_1516 NC_008750.1 1722832 1724058 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 1722832..1724058 Shewanella sp. W3-18-1 4658550 YP_962909.1 CDS Sputw3181_1517 NC_008750.1 1724123 1724659 D PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: son:SO3121 hypothetical protein; NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 1724123..1724659 Shewanella sp. W3-18-1 4658697 YP_962910.1 CDS Sputw3181_1518 NC_008750.1 1724722 1726101 R PFAM: oxidoreductase domain protein; KEGG: shm:Shewmr7_1440 twin-arginine translocation pathway signal; oxidoreductase domain-containing protein complement(1724722..1726101) Shewanella sp. W3-18-1 4661566 YP_962911.1 CDS Sputw3181_1519 NC_008750.1 1726424 1726858 D KEGG: son:SO3119 hypothetical protein; hypothetical protein 1726424..1726858 Shewanella sp. W3-18-1 4658466 YP_962912.1 CDS Sputw3181_1520 NC_008750.1 1726915 1727586 R PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_1442 pseudouridylate synthase; pseudouridylate synthase complement(1726915..1727586) Shewanella sp. W3-18-1 4658504 YP_962913.1 CDS Sputw3181_1521 NC_008750.1 1727805 1728440 R PFAM: protein of unknown function DUF479; KEGG: shm:Shewmr7_1444 protein of unknown function DUF479; hypothetical protein complement(1727805..1728440) Shewanella sp. W3-18-1 4661328 YP_962914.1 CDS Sputw3181_1522 NC_008750.1 1728526 1728744 D KEGG: son:SO3115 hypothetical protein; hypothetical protein 1728526..1728744 Shewanella sp. W3-18-1 4658587 YP_962915.1 CDS queA NC_008750.1 1728801 1729838 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1728801..1729838 Shewanella sp. W3-18-1 4658192 YP_962916.1 CDS tgt NC_008750.1 1729998 1731122 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1729998..1731122 Shewanella sp. W3-18-1 4658150 YP_962917.1 CDS yajC NC_008750.1 1731150 1731482 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1731150..1731482 Shewanella sp. W3-18-1 4658126 YP_962918.1 CDS secD NC_008750.1 1731500 1733350 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1731500..1733350 Shewanella sp. W3-18-1 4658044 YP_962919.1 CDS secF NC_008750.1 1733363 1734310 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1733363..1734310 Shewanella sp. W3-18-1 4657703 YP_962920.1 CDS Sputw3181_1528 NC_008750.1 1734544 1734861 D KEGG: shm:Shewmr7_1451 hypothetical protein; hypothetical protein 1734544..1734861 Shewanella sp. W3-18-1 4657986 YP_962921.1 CDS Sputw3181_1529 NC_008750.1 1735015 1735926 D TIGRFAM: siroheme synthase; KEGG: son:SO3108 precorrin-2 oxidase / ferrochelatase; siroheme synthase 1735015..1735926 Shewanella sp. W3-18-1 4657957 YP_962922.1 CDS Sputw3181_1530 NC_008750.1 1736021 1736566 D PFAM: YaeQ family protein; KEGG: son:SO3107 hypothetical protein; YaeQ family protein 1736021..1736566 Shewanella sp. W3-18-1 4657685 YP_962923.1 CDS Sputw3181_1531 NC_008750.1 1736623 1739094 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: shm:Shewmr7_1455 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin complement(1736623..1739094) Shewanella sp. W3-18-1 4660917 YP_962924.1 CDS Sputw3181_1532 NC_008750.1 1739623 1739988 R PFAM: Rhodanese domain protein; KEGG: son:SO3105 phage shock protein E; rhodanese domain-containing protein complement(1739623..1739988) Shewanella sp. W3-18-1 4657672 YP_962925.1 CDS Sputw3181_1533 NC_008750.1 1740035 1740247 R KEGG: shm:Shewmr7_1457 hypothetical protein; hypothetical protein complement(1740035..1740247) Shewanella sp. W3-18-1 4657808 YP_962926.1 CDS Sputw3181_1534 NC_008750.1 1740289 1743516 R PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1393 acriflavin resistance protein; acriflavin resistance protein complement(1740289..1743516) Shewanella sp. W3-18-1 4661831 YP_962927.1 CDS Sputw3181_1535 NC_008750.1 1743542 1744564 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_1394 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1743542..1744564) Shewanella sp. W3-18-1 4661877 YP_962928.1 CDS Sputw3181_1536 NC_008750.1 1744735 1745451 R PFAM: protein of unknown function DUF541; KEGG: shm:Shewmr7_1460 protein of unknown function DUF541; hypothetical protein complement(1744735..1745451) Shewanella sp. W3-18-1 4661117 YP_962929.1 CDS Sputw3181_1537 NC_008750.1 1745559 1745945 R KEGG: shm:Shewmr7_1461 hypothetical protein; hypothetical protein complement(1745559..1745945) Shewanella sp. W3-18-1 4657778 YP_962930.1 CDS Sputw3181_1538 NC_008750.1 1746050 1747381 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO3099 long-chain fatty acid transport protein, putative; aromatic hydrocarbon degradation membrane protein complement(1746050..1747381) Shewanella sp. W3-18-1 4657800 YP_962931.1 CDS Sputw3181_1539 NC_008750.1 1747703 1749196 R TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: shm:Shewmr7_1463 sodium/proline symporter; sodium/proline symporter complement(1747703..1749196) Shewanella sp. W3-18-1 4657862 YP_962932.1 CDS Sputw3181_1540 NC_008750.1 1749311 1750015 R KEGG: she:Shewmr4_1399 hypothetical protein; hypothetical protein complement(1749311..1750015) Shewanella sp. W3-18-1 4657891 YP_962933.1 CDS Sputw3181_1541 NC_008750.1 1750008 1750571 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(1750008..1750571) Shewanella sp. W3-18-1 4657901 YP_962934.1 CDS Sputw3181_1542 NC_008750.1 1750647 1752290 R KEGG: shm:Shewmr7_1466 hypothetical protein; hypothetical protein complement(1750647..1752290) Shewanella sp. W3-18-1 4657946 YP_962935.1 CDS Sputw3181_1543 NC_008750.1 1752284 1754275 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: von Willebrand factor, type A; Tetratricopeptide domain protein; KEGG: she:Shewmr4_1402 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(1752284..1754275) Shewanella sp. W3-18-1 4657951 YP_962936.1 CDS Sputw3181_1544 NC_008750.1 1754275 1755294 R PFAM: von Willebrand factor, type A; KEGG: shm:Shewmr7_1468 von Willebrand factor, type A; von Willebrand factor type A domain-containing protein complement(1754275..1755294) Shewanella sp. W3-18-1 4657972 YP_962937.1 CDS Sputw3181_1545 NC_008750.1 1755288 1755851 R KEGG: shm:Shewmr7_1469 hypothetical protein; hypothetical protein complement(1755288..1755851) Shewanella sp. W3-18-1 4658040 YP_962938.1 CDS Sputw3181_1546 NC_008750.1 1755931 1756884 R PFAM: protein of unknown function DUF58; KEGG: son:SO3091 hypothetical protein; hypothetical protein complement(1755931..1756884) Shewanella sp. W3-18-1 4658042 YP_962939.1 CDS Sputw3181_1547 NC_008750.1 1756909 1757916 R PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: shm:Shewmr7_1471 ATPase associated with various cellular activities, AAA_3; ATPase complement(1756909..1757916) Shewanella sp. W3-18-1 4658059 YP_962940.1 CDS fadI NC_008750.1 1758128 1759438 D FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 1758128..1759438 Shewanella sp. W3-18-1 4658132 YP_962941.1 CDS fadJ NC_008750.1 1759444 1761564 D multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 1759444..1761564 Shewanella sp. W3-18-1 4658154 YP_962942.1 CDS Sputw3181_1550 NC_008750.1 1761893 1762093 D KEGG: son:SO3087 hypothetical protein; hypothetical protein 1761893..1762093 Shewanella sp. W3-18-1 4657737 YP_962943.1 CDS Sputw3181_1551 NC_008750.1 1762390 1763010 R KEGG: she:Shewmr4_1410 hypothetical protein; hypothetical protein complement(1762390..1763010) Shewanella sp. W3-18-1 4658195 YP_962944.1 CDS Sputw3181_1552 NC_008750.1 1763120 1767430 R KEGG: she:Shewmr4_1411 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(1763120..1767430) Shewanella sp. W3-18-1 4657742 YP_962945.1 CDS Sputw3181_1553 NC_008750.1 1767682 1770471 R PFAM: peptidase M16 domain protein; KEGG: shm:Shewmr7_1477 peptidase M16 domain protein; peptidase M16 domain-containing protein complement(1767682..1770471) Shewanella sp. W3-18-1 4658209 YP_962946.1 CDS Sputw3181_1554 NC_008750.1 1770902 1771372 D TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: she:Shewmr4_1413 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase, SixA 1770902..1771372 Shewanella sp. W3-18-1 4658255 YP_962947.1 CDS Sputw3181_1555 NC_008750.1 1771450 1771980 R PFAM: Smr protein/MutS2; KEGG: son:SO3081 Smr domain protein; hypothetical protein complement(1771450..1771980) Shewanella sp. W3-18-1 4657754 YP_962948.1 CDS Sputw3181_1556 NC_008750.1 1772062 1773006 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1772062..1773006 Shewanella sp. W3-18-1 4658298 YP_962949.1 CDS Sputw3181_1557 NC_008750.1 1773130 1774224 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1773130..1774224 Shewanella sp. W3-18-1 4658342 YP_962950.1 CDS Sputw3181_1558 NC_008750.1 1774306 1775481 D PFAM: nucleoside:H+ symporter; major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1482 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1774306..1775481 Shewanella sp. W3-18-1 4658650 YP_962951.1 CDS Sputw3181_1559 NC_008750.1 1775532 1776710 D PFAM: ATP-NAD/AcoX kinase; KEGG: son:SO3077 hypothetical protein; ATP-NAD/AcoX kinase 1775532..1776710 Shewanella sp. W3-18-1 4658672 YP_962952.1 CDS Sputw3181_1560 NC_008750.1 1776715 1776999 D KEGG: she:Shewmr4_1419 hypothetical protein; hypothetical protein 1776715..1776999 Shewanella sp. W3-18-1 4658440 YP_962953.1 CDS Sputw3181_1561 NC_008750.1 1776989 1777777 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: shm:Shewmr7_1485 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 1776989..1777777 Shewanella sp. W3-18-1 4658728 YP_962954.1 CDS Sputw3181_1562 NC_008750.1 1777855 1779897 R PFAM: FAD dependent oxidoreductase; KEGG: she:Shewmr4_1421 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1777855..1779897) Shewanella sp. W3-18-1 4658734 YP_962955.1 CDS Sputw3181_1563 NC_008750.1 1780012 1781247 D PFAM: beta-ketoacyl synthase; KEGG: shm:Shewmr7_1487 beta-ketoacyl synthase; beta-ketoacyl synthase 1780012..1781247 Shewanella sp. W3-18-1 4658777 YP_962956.1 CDS Sputw3181_1564 NC_008750.1 1781407 1782537 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO3071 erythronate-4-phosphate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 1781407..1782537 Shewanella sp. W3-18-1 4658788 YP_962957.1 CDS Sputw3181_1565 NC_008750.1 1782540 1783556 D KEGG: shm:Shewmr7_1489 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; aspartate-semialdehyde dehydrogenase 1782540..1783556 Shewanella sp. W3-18-1 4658791 YP_962958.1 CDS Sputw3181_1566 NC_008750.1 1783734 1787027 D KEGG: shm:Shewmr7_1490 hypothetical protein; hypothetical protein 1783734..1787027 Shewanella sp. W3-18-1 4658566 YP_962959.1 CDS truA NC_008750.1 1787130 1787915 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1787130..1787915 Shewanella sp. W3-18-1 4658822 YP_962960.1 CDS Sputw3181_1568 NC_008750.1 1787985 1789256 D KEGG: she:Shewmr4_1427 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 1787985..1789256 Shewanella sp. W3-18-1 4658931 YP_962961.1 CDS Sputw3181_1569 NC_008750.1 1789240 1790019 D PFAM: Sporulation domain protein; KEGG: shm:Shewmr7_1493 sporulation domain protein; sporulation domain-containing protein 1789240..1790019 Shewanella sp. W3-18-1 4658945 YP_962962.1 CDS Sputw3181_1570 NC_008750.1 1790134 1790622 D PFAM: Colicin V production protein; KEGG: son:SO3065 colicin V production protein; colicin V production protein 1790134..1790622 Shewanella sp. W3-18-1 4658948 YP_962963.1 CDS Sputw3181_1571 NC_008750.1 1790754 1792268 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1790754..1792268 Shewanella sp. W3-18-1 4661338 YP_962964.1 CDS Sputw3181_1573 NC_008750.1 1792824 1794950 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1792824..1794950 Shewanella sp. W3-18-1 4659572 YP_962965.1 CDS Sputw3181_1574 NC_008750.1 1795199 1796368 D PFAM: porin, Gram-negative type; KEGG: son:SO3060 outer membrane porin, putative; porin 1795199..1796368 Shewanella sp. W3-18-1 4659169 YP_962966.1 CDS Sputw3181_1575 NC_008750.1 1796498 1798024 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3059 formate hydrogenlyase transcriptional activator, putative; sigma-54 dependent trancsriptional regulator complement(1796498..1798024) Shewanella sp. W3-18-1 4659179 YP_962967.1 CDS Sputw3181_1576 NC_008750.1 1798190 1799743 D TIGRFAM: flavocytochrome c; PFAM: monooxygenase, FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO3058 flavocytochrome c flavin subunit, putative; flavocytochrome c 1798190..1799743 Shewanella sp. W3-18-1 4659238 YP_962968.1 CDS Sputw3181_1577 NC_008750.1 1799784 1801421 D PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO3057 Pal/histidase family protein; phenylalanine/histidine ammonia-lyase 1799784..1801421 Shewanella sp. W3-18-1 4659099 YP_962969.1 CDS Sputw3181_1578 NC_008750.1 1801440 1801847 D KEGG: son:SO3056 tetraheme cytochrome c; tetraheme cytochrome c 1801440..1801847 Shewanella sp. W3-18-1 4659332 YP_962970.1 CDS Sputw3181_1579 NC_008750.1 1802069 1803358 R PFAM: alpha/beta hydrolase fold; KEGG: she:Shewmr4_1434 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein complement(1802069..1803358) Shewanella sp. W3-18-1 4659131 YP_962971.1 CDS Sputw3181_1580 NC_008750.1 1803540 1804184 D PFAM: beta-lactamase domain protein; KEGG: shm:Shewmr7_1500 beta-lactamase domain protein; beta-lactamase domain-containing protein 1803540..1804184 Shewanella sp. W3-18-1 4659132 YP_962972.1 CDS Sputw3181_1581 NC_008750.1 1804426 1805442 D PFAM: protein of unknown function DUF182; KEGG: she:Shewmr4_1437 protein of unknown function DUF182; hypothetical protein 1804426..1805442 Shewanella sp. W3-18-1 4659444 YP_962973.1 CDS Sputw3181_1582 NC_008750.1 1805451 1806116 D KEGG: she:Shewmr4_1438 hypothetical protein; hypothetical protein 1805451..1806116 Shewanella sp. W3-18-1 4659137 YP_962974.1 CDS Sputw3181_1583 NC_008750.1 1806120 1806623 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: shm:Shewmr7_1504 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1806120..1806623 Shewanella sp. W3-18-1 4659138 YP_962975.1 CDS Sputw3181_1584 NC_008750.1 1806625 1808871 D PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: son:SO3048 isoquinoline 1-oxidoreductase, beta subunit, putative; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 1806625..1808871 Shewanella sp. W3-18-1 4659471 YP_962976.1 CDS Sputw3181_1585 NC_008750.1 1809258 1809749 D PFAM: protein of unknown function DUF1097; KEGG: shm:Shewmr7_1506 protein of unknown function DUF1097; hypothetical protein 1809258..1809749 Shewanella sp. W3-18-1 4659139 YP_962977.1 CDS Sputw3181_1586 NC_008750.1 1809877 1811331 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_1442 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1809877..1811331 Shewanella sp. W3-18-1 4659480 YP_962978.1 CDS Sputw3181_1587 NC_008750.1 1811691 1812122 D KEGG: son:SO3045 hypothetical protein; hypothetical protein 1811691..1812122 Shewanella sp. W3-18-1 4659492 YP_962979.1 CDS Sputw3181_1588 NC_008750.1 1812229 1812660 D KEGG: shm:Shewmr7_1510 hypothetical protein; hypothetical protein 1812229..1812660 Shewanella sp. W3-18-1 4659146 YP_962980.1 CDS Sputw3181_1589 NC_008750.1 1812734 1813171 D KEGG: rpe:RPE_3539 hypothetical protein; hypothetical protein 1812734..1813171 Shewanella sp. W3-18-1 4659148 YP_962981.1 CDS Sputw3181_1590 NC_008750.1 1813307 1814119 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(1813307..1814119) Shewanella sp. W3-18-1 4659625 YP_962982.1 CDS Sputw3181_1591 NC_008750.1 1814119 1814418 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(1814119..1814418) Shewanella sp. W3-18-1 4659609 YP_962983.1 CDS Sputw3181_1592 NC_008750.1 1814418 1814963 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(1814418..1814963) Shewanella sp. W3-18-1 4659863 YP_962984.1 CDS Sputw3181_1593 NC_008750.1 1815183 1816307 R PFAM: ferric iron reductase; KEGG: son:SO3034 ferric iron reductase protein, putative; ferric iron reductase complement(1815183..1816307) Shewanella sp. W3-18-1 4659888 YP_962985.1 CDS Sputw3181_1594 NC_008750.1 1816452 1818665 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_1517 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(1816452..1818665) Shewanella sp. W3-18-1 4659953 YP_962986.1 CDS Sputw3181_1595 NC_008750.1 1818762 1820690 R PFAM: IucA/IucC family protein; KEGG: she:Shewmr4_1452 IucA/IucC family protein; IucA/IucC family protein complement(1818762..1820690) Shewanella sp. W3-18-1 4659981 YP_962987.1 CDS Sputw3181_1596 NC_008750.1 1820691 1821380 R KEGG: son:SO3031 siderophore biosynthesis protein, putative; siderophore biosynthesis protein complement(1820691..1821380) Shewanella sp. W3-18-1 4660034 YP_962988.1 CDS Sputw3181_1597 NC_008750.1 1821380 1822897 R KEGG: shm:Shewmr7_1520 L-lysine 6-monooxygenase (NADPH); L-lysine 6-monooxygenase complement(1821380..1822897) Shewanella sp. W3-18-1 4660069 YP_962989.1 CDS Sputw3181_1598 NC_008750.1 1823584 1823868 R KEGG: son:SO3029 hypothetical protein; hypothetical protein complement(1823584..1823868) Shewanella sp. W3-18-1 4660073 YP_962990.1 CDS Sputw3181_1599 NC_008750.1 1823940 1824371 R KEGG: she:Shewmr4_1456 hypothetical protein; hypothetical protein complement(1823940..1824371) Shewanella sp. W3-18-1 4660094 YP_962991.1 CDS trpA NC_008750.1 1824442 1825278 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(1824442..1825278) Shewanella sp. W3-18-1 4660150 YP_962992.1 CDS Sputw3181_1601 NC_008750.1 1825284 1826474 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(1825284..1826474) Shewanella sp. W3-18-1 4661681 YP_962993.1 CDS Sputw3181_1602 NC_008750.1 1826587 1828065 R monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase complement(1826587..1828065) Shewanella sp. W3-18-1 4660427 YP_962994.1 CDS trpD NC_008750.1 1828072 1829118 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(1828072..1829118) Shewanella sp. W3-18-1 4660189 YP_962995.1 CDS Sputw3181_1604 NC_008750.1 1829115 1829717 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(1829115..1829717) Shewanella sp. W3-18-1 4660498 YP_962996.1 CDS Sputw3181_1605 NC_008750.1 1829727 1831358 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(1829727..1831358) Shewanella sp. W3-18-1 4660511 YP_962997.1 CDS Sputw3181_1606 NC_008750.1 1831768 1832628 D PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: she:Shewmr4_1463 PHP C-terminal domain protein; phosphotransferase domain-containing protein 1831768..1832628 Shewanella sp. W3-18-1 4660544 YP_962998.1 CDS Sputw3181_1607 NC_008750.1 1832625 1833245 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: son:SO3016 Sua5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 1832625..1833245 Shewanella sp. W3-18-1 4660567 YP_962999.1 CDS Sputw3181_1608 NC_008750.1 1833405 1834193 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: son:SO3015 putative segregation and condensation protein A; chromosome segregation and condensation protein ScpA 1833405..1834193 Shewanella sp. W3-18-1 4660362 YP_963000.1 CDS Sputw3181_1609 NC_008750.1 1834197 1834793 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: shm:Shewmr7_1532 putative transcriptional regulator; putative transcriptional regulator 1834197..1834793 Shewanella sp. W3-18-1 4660617 YP_963001.1 CDS Sputw3181_1610 NC_008750.1 1834786 1835661 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shm:Shewmr7_1533 pseudouridine synthase, Rsu; pseudouridine synthase 1834786..1835661 Shewanella sp. W3-18-1 4660683 YP_963002.1 CDS Sputw3181_1611 NC_008750.1 1835762 1836736 D KEGG: son:SO2936 hypothetical protein; hypothetical protein 1835762..1836736 Shewanella sp. W3-18-1 4660726 YP_963003.1 CDS Sputw3181_1612 NC_008750.1 1836784 1837521 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_1534 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(1836784..1837521) Shewanella sp. W3-18-1 4660739 YP_963004.1 CDS Sputw3181_1613 NC_008750.1 1837783 1840257 D KEGG: she:Shewmr4_1469 hypothetical protein; hypothetical protein 1837783..1840257 Shewanella sp. W3-18-1 4660772 YP_963005.1 CDS Sputw3181_1614 NC_008750.1 1840381 1841397 D SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 1840381..1841397 Shewanella sp. W3-18-1 4660790 YP_963006.1 CDS Sputw3181_1615 NC_008750.1 1841491 1842558 R KEGG: shm:Shewmr7_1542 hypothetical protein; hypothetical protein complement(1841491..1842558) Shewanella sp. W3-18-1 4660803 YP_963007.1 CDS Sputw3181_1616 NC_008750.1 1842704 1843303 R PFAM: lipolytic enzyme, G-D-S-L family; KEGG: she:Shewmr4_1478 arylesterase; arylesterase complement(1842704..1843303) Shewanella sp. W3-18-1 4660847 YP_963008.1 CDS Sputw3181_1617 NC_008750.1 1843356 1844111 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_1479 ABC transporter related; ABC transporter-like protein 1843356..1844111 Shewanella sp. W3-18-1 4660417 YP_963009.1 CDS Sputw3181_1618 NC_008750.1 1844114 1846609 D PFAM: protein of unknown function DUF214; KEGG: son:SO2926 ABC transporter, permease, putative; hypothetical protein 1844114..1846609 Shewanella sp. W3-18-1 4660859 YP_963010.1 CDS Sputw3181_1619 NC_008750.1 1846667 1847890 R PFAM: sodium/glutamate symporter; KEGG: son:SO2923 sodium/glutamate symporter; sodium/glutamate symporter complement(1846667..1847890) Shewanella sp. W3-18-1 4660862 YP_963011.1 CDS Sputw3181_1620 NC_008750.1 1848406 1849299 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; domain of unknown function DUF1731; KEGG: shm:Shewmr7_1548 hypothetical protein; hypothetical protein complement(1848406..1849299) Shewanella sp. W3-18-1 4660869 YP_963012.1 CDS folX NC_008750.1 1849394 1849765 R catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase complement(1849394..1849765) Shewanella sp. W3-18-1 4660879 YP_963013.1 CDS Sputw3181_1622 NC_008750.1 1849863 1850969 D PFAM: protein of unknown function UPF0118; KEGG: shm:Shewmr7_1550 protein of unknown function UPF0118; hypothetical protein 1849863..1850969 Shewanella sp. W3-18-1 4660949 YP_963014.1 CDS Sputw3181_1623 NC_008750.1 1850977 1851891 D KEGG: son:SO2919 hypothetical protein; hypothetical protein 1850977..1851891 Shewanella sp. W3-18-1 4660960 YP_963015.1 CDS Sputw3181_1624 NC_008750.1 1851997 1852200 D KEGG: shm:Shewmr7_1553 hypothetical protein; hypothetical protein 1851997..1852200 Shewanella sp. W3-18-1 4661403 YP_963016.1 CDS Sputw3181_1625 NC_008750.1 1852324 1852752 R KEGG: son:SO2917 hypothetical protein; hypothetical protein complement(1852324..1852752) Shewanella sp. W3-18-1 4661283 YP_963017.1 CDS Sputw3181_1626 NC_008750.1 1853256 1854866 D KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 1853256..1854866 Shewanella sp. W3-18-1 4661141 YP_963018.1 CDS Sputw3181_1627 NC_008750.1 1855002 1857155 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(1855002..1857155) Shewanella sp. W3-18-1 4661189 YP_963019.1 CDS Sputw3181_1628 NC_008750.1 1857274 1858476 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1857274..1858476) Shewanella sp. W3-18-1 4661165 YP_963020.1 CDS Sputw3181_1629 NC_008750.1 1858563 1859060 D PFAM: protein of unknown function DUF412; KEGG: son:SO2914 hypothetical protein; hypothetical protein 1858563..1859060 Shewanella sp. W3-18-1 4661144 YP_963021.1 CDS pflA NC_008750.1 1859105 1859845 R activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 complement(1859105..1859845) Shewanella sp. W3-18-1 4661184 YP_963022.1 CDS Sputw3181_1631 NC_008750.1 1859909 1862191 R KEGG: son:SO2912 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; formate acetyltransferase complement(1859909..1862191) Shewanella sp. W3-18-1 4661166 YP_963023.1 CDS Sputw3181_1632 NC_008750.1 1862836 1864368 R KEGG: sfr:Sfri_2472 hypothetical protein; hypothetical protein complement(1862836..1864368) Shewanella sp. W3-18-1 4661173 YP_963024.1 CDS Sputw3181_1633 NC_008750.1 1865285 1866898 D PFAM: formate/nitrite transporter; CBS domain containing protein; KEGG: sfr:Sfri_2470 formate/nitrite transporter; formate/nitrite transporter 1865285..1866898 Shewanella sp. W3-18-1 4661160 YP_963025.1 CDS Sputw3181_1634 NC_008750.1 1866978 1867889 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_2469 transcriptional regulator, LysR family protein; LysR family transcriptional regulator complement(1866978..1867889) Shewanella sp. W3-18-1 4661133 YP_963026.1 CDS Sputw3181_1635 NC_008750.1 1868320 1869798 D PFAM: C4-dicarboxylate anaerobic carrier; KEGG: shm:Shewmr7_1563 C4-dicarboxylate anaerobic carrier; hypothetical protein 1868320..1869798 Shewanella sp. W3-18-1 4661119 YP_963027.1 CDS Sputw3181_1636 NC_008750.1 1869921 1872821 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_2471 TonB-dependent receptor; TonB-dependent receptor complement(1869921..1872821) Shewanella sp. W3-18-1 4661090 YP_963028.1 CDS Sputw3181_1637 NC_008750.1 1873521 1874525 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: son:SO2906 hypothetical protein; C4-dicarboxylate transporter/malic acid transport protein complement(1873521..1874525) Shewanella sp. W3-18-1 4661096 YP_963029.1 CDS Sputw3181_1638 NC_008750.1 1874657 1875736 R PFAM: O-methyltransferase, family 2; KEGG: shm:Shewmr7_1566 methyltransferase type 12; O-methyltransferase family protein complement(1874657..1875736) Shewanella sp. W3-18-1 4661077 YP_963030.1 CDS Sputw3181_1639 NC_008750.1 1875935 1876903 R TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: son:SO2903 cysteine synthase A; cysteine synthase A complement(1875935..1876903) Shewanella sp. W3-18-1 4661049 YP_963031.1 CDS Sputw3181_1640 NC_008750.1 1877155 1878351 D PFAM: RDD domain containing protein; KEGG: she:Shewmr4_1501 RDD domain containing protein; RDD domain-containing protein 1877155..1878351 Shewanella sp. W3-18-1 4661063 YP_963032.1 CDS Sputw3181_1641 NC_008750.1 1878348 1879469 D catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1878348..1879469 Shewanella sp. W3-18-1 4661067 YP_963033.1 CDS Sputw3181_1642 NC_008750.1 1879564 1880343 R putative role in sulfur assimilation; putative sulfate transport protein CysZ complement(1879564..1880343) Shewanella sp. W3-18-1 4661048 YP_963034.1 CDS Sputw3181_1643 NC_008750.1 1880541 1883978 D TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: son:SO2898 SMC family protein; chromosome segregation protein SMC 1880541..1883978 Shewanella sp. W3-18-1 4661045 YP_963035.1 CDS Sputw3181_1644 NC_008750.1 1884002 1885030 D TIGRFAM: cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; KEGG: she:Shewmr4_1507 cell division protein ZipA; cell division protein ZipA 1884002..1885030 Shewanella sp. W3-18-1 4661874 YP_963036.1 CDS Sputw3181_1645 NC_008750.1 1885107 1887164 D KEGG: son:SO2896 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like; NAD-dependent DNA ligase 1885107..1887164 Shewanella sp. W3-18-1 4661872 YP_963037.1 CDS Sputw3181_1646 NC_008750.1 1887329 1887826 D KEGG: son:SO2863 hypothetical protein; hypothetical protein 1887329..1887826 Shewanella sp. W3-18-1 4661861 YP_963038.1 CDS Sputw3181_1647 NC_008750.1 1888045 1889253 D TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: she:Shewmr4_1510 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1888045..1889253 Shewanella sp. W3-18-1 4661846 YP_963039.1 CDS Sputw3181_1648 NC_008750.1 1889310 1890170 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: shm:Shewmr7_1578 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1889310..1890170 Shewanella sp. W3-18-1 4661843 YP_963040.1 CDS Sputw3181_1649 NC_008750.1 1890284 1890907 D PFAM: DSBA oxidoreductase; KEGG: son:SO2860 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase 1890284..1890907 Shewanella sp. W3-18-1 4661845 YP_963041.1 CDS Sputw3181_1650 NC_008750.1 1891523 1891789 D KEGG: son:SO2858 hypothetical protein; hypothetical protein 1891523..1891789 Shewanella sp. W3-18-1 4661833 YP_963042.1 CDS Sputw3181_1651 NC_008750.1 1891801 1893537 D PFAM: Na+/solute symporter; KEGG: shm:Shewmr7_1581 Na+/solute symporter; Na+/solute symporter 1891801..1893537 Shewanella sp. W3-18-1 4661825 YP_963043.1 CDS Sputw3181_1652 NC_008750.1 1893680 1895527 D PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: shm:Shewmr7_1582 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein 1893680..1895527 Shewanella sp. W3-18-1 4661806 YP_963044.1 CDS Sputw3181_1653 NC_008750.1 1895543 1896214 D PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: she:Shewmr4_1516 exonuclease, RNase T and DNA polymerase III; exonuclease 1895543..1896214 Shewanella sp. W3-18-1 4661814 YP_963045.1 CDS Sputw3181_1654 NC_008750.1 1896412 1897476 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase complement(1896412..1897476) Shewanella sp. W3-18-1 4661770 YP_963046.1 CDS Sputw3181_1655 NC_008750.1 1897569 1898270 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: she:Shewmr4_1521 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(1897569..1898270) Shewanella sp. W3-18-1 4661790 YP_963047.1 CDS Sputw3181_1656 NC_008750.1 1898592 1899143 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 1898592..1899143 Shewanella sp. W3-18-1 4661785 YP_963048.1 CDS grxA NC_008750.1 1905614 1905874 R functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin complement(1905614..1905874) Shewanella sp. W3-18-1 4660024 YP_963049.1 CDS Sputw3181_1658 NC_008750.1 1905935 1907743 R PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_2435 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit complement(1905935..1907743) Shewanella sp. W3-18-1 4661753 YP_963050.1 CDS Sputw3181_1659 NC_008750.1 1907891 1909843 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(1907891..1909843) Shewanella sp. W3-18-1 4661723 YP_963051.1 CDS Sputw3181_1660 NC_008750.1 1910019 1913456 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2742 sensor histidine kinase/response regulator; integral membrane sensor hybrid histidine kinase 1910019..1913456 Shewanella sp. W3-18-1 4661739 YP_963052.1 CDS Sputw3181_1661 NC_008750.1 1913512 1915113 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: vch:VC1248 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(1913512..1915113) Shewanella sp. W3-18-1 4661743 YP_963053.1 CDS Sputw3181_1662 NC_008750.1 1915346 1916686 R TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: son:SO2741 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(1915346..1916686) Shewanella sp. W3-18-1 4661718 YP_963054.1 CDS Sputw3181_1663 NC_008750.1 1916810 1917862 D KEGG: shm:Shewmr7_2431 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 1916810..1917862 Shewanella sp. W3-18-1 4661696 YP_963055.1 CDS Sputw3181_1664 NC_008750.1 1917867 1919078 D PFAM: aminotransferase, class I and II; aminotransferase class-III; KEGG: son:SO2739 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 1917867..1919078 Shewanella sp. W3-18-1 4661702 YP_963056.1 CDS Sputw3181_1665 NC_008750.1 1919217 1920026 D TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_2357 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC 1919217..1920026 Shewanella sp. W3-18-1 4661684 YP_963057.1 CDS bioD NC_008750.1 1920066 1920809 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 1920066..1920809 Shewanella sp. W3-18-1 4661687 YP_963058.1 CDS Sputw3181_1667 NC_008750.1 1920909 1923203 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: dar:Daro_4029 TonB-dependent receptor; TonB-dependent receptor complement(1920909..1923203) Shewanella sp. W3-18-1 4661665 YP_963059.1 CDS Sputw3181_1668 NC_008750.1 1923221 1927177 R PFAM: CobN/magnesium chelatase; KEGG: mma:MM1602 cobalamin biosynthesis protein CobN; cobaltochelatase complement(1923221..1927177) Shewanella sp. W3-18-1 4661682 YP_963060.1 CDS Sputw3181_1669 NC_008750.1 1927164 1927502 R KEGG: mbu:Mbur_2259 hypothetical protein; hypothetical protein complement(1927164..1927502) Shewanella sp. W3-18-1 4661653 YP_963061.1 CDS Sputw3181_1670 NC_008750.1 1927499 1928113 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: mac:MA4426 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel complement(1927499..1928113) Shewanella sp. W3-18-1 4661621 YP_963062.1 CDS Sputw3181_1671 NC_008750.1 1928449 1929417 R KEGG: shm:Shewmr7_2427 hypothetical protein; hypothetical protein complement(1928449..1929417) Shewanella sp. W3-18-1 4661624 YP_963063.1 CDS mdoG NC_008750.1 1930031 1931620 R involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G complement(1930031..1931620) Shewanella sp. W3-18-1 4661622 YP_963064.1 CDS Sputw3181_1673 NC_008750.1 1931977 1932687 R alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E complement(1931977..1932687) Shewanella sp. W3-18-1 4661579 YP_963065.1 CDS Sputw3181_1674 NC_008750.1 1932977 1933840 D putative metalloprotease; heat shock protein HtpX 1932977..1933840 Shewanella sp. W3-18-1 4661609 YP_963066.1 CDS Sputw3181_1675 NC_008750.1 1934243 1934593 D KEGG: shm:Shewmr7_2388 cytochrome c3; cytochrome c3 1934243..1934593 Shewanella sp. W3-18-1 4661586 YP_963067.1 CDS Sputw3181_1676 NC_008750.1 1935331 1935966 D PFAM: regulatory protein, LuxR; KEGG: shm:Shewmr7_2386 transcriptional regulator, LuxR family; response regulator receiver protein 1935331..1935966 Shewanella sp. W3-18-1 4661577 YP_963068.1 CDS Sputw3181_1677 NC_008750.1 1936130 1936507 D KEGG: son:SO2890 hypothetical protein; hypothetical protein 1936130..1936507 Shewanella sp. W3-18-1 4661599 YP_963069.1 CDS Sputw3181_1678 NC_008750.1 1936602 1937009 R PFAM: protein of unknown function DUF307; KEGG: son:SO1977 hypothetical protein; hypothetical protein complement(1936602..1937009) Shewanella sp. W3-18-1 4661592 YP_963070.1 CDS Sputw3181_1679 NC_008750.1 1937278 1938306 D KEGG: son:SO1978 hypothetical protein; hypothetical protein 1937278..1938306 Shewanella sp. W3-18-1 4661571 YP_963071.1 CDS Sputw3181_1680 NC_008750.1 1938388 1939101 D PFAM: NUDIX hydrolase; KEGG: son:SO1979 MutT/nudix family protein; NUDIX hydrolase 1938388..1939101 Shewanella sp. W3-18-1 4661573 YP_963072.1 CDS Sputw3181_1681 NC_008750.1 1939460 1940347 D KEGG: son:SO1980 phosphoribosyl transferase domain protein; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 1939460..1940347 Shewanella sp. W3-18-1 4661564 YP_963073.1 CDS Sputw3181_1682 NC_008750.1 1940358 1941830 D PFAM: Nicotinate phosphoribosyltransferase and related; KEGG: son:SO1981 hypothetical protein; putative nicotinate phosphoribosyltransferase 1940358..1941830 Shewanella sp. W3-18-1 4661555 YP_963074.1 CDS Sputw3181_1683 NC_008750.1 1941988 1942248 R KEGG: shm:Shewmr7_2350 hypothetical protein; hypothetical protein complement(1941988..1942248) Shewanella sp. W3-18-1 4661560 YP_963075.1 CDS Sputw3181_1684 NC_008750.1 1942549 1942731 R KEGG: shm:Shewmr7_2349 hypothetical protein; hypothetical protein complement(1942549..1942731) Shewanella sp. W3-18-1 4661457 YP_963076.1 CDS Sputw3181_1685 NC_008750.1 1943345 1944052 R TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: she:Shewmr4_2276 anti-ECFsigma factor, ChrR; anti-ECF sigma factor ChrR complement(1943345..1944052) Shewanella sp. W3-18-1 4661545 YP_963077.1 CDS Sputw3181_1686 NC_008750.1 1944045 1944707 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO1986 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(1944045..1944707) Shewanella sp. W3-18-1 4661543 YP_963078.1 CDS Sputw3181_1687 NC_008750.1 1944842 1945393 R PFAM: peptidase S16, lon domain protein; KEGG: shm:Shewmr7_2346 peptidase S16, lon domain protein; peptidase S16, lon domain-containing protein complement(1944842..1945393) Shewanella sp. W3-18-1 4661535 YP_963079.1 CDS Sputw3181_1688 NC_008750.1 1945490 1946107 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO1988 hypothetical methyltransferase; type 11 methyltransferase 1945490..1946107 Shewanella sp. W3-18-1 4661521 YP_963080.1 CDS Sputw3181_1689 NC_008750.1 1946371 1947315 D PFAM: response regulator receiver; CheW domain protein; KEGG: she:Shewmr4_2272 response regulator receiver modulated CheW protein; putative CheW protein 1946371..1947315 Shewanella sp. W3-18-1 4661530 YP_963081.1 CDS Sputw3181_1690 NC_008750.1 1947409 1948047 R KEGG: shm:Shewmr7_2343 hypothetical protein; hypothetical protein complement(1947409..1948047) Shewanella sp. W3-18-1 4661496 YP_963082.1 CDS Sputw3181_1691 NC_008750.1 1948099 1948458 R KEGG: shm:Shewmr7_2342 hypothetical protein; hypothetical protein complement(1948099..1948458) Shewanella sp. W3-18-1 4661507 YP_963083.1 CDS Sputw3181_1692 NC_008750.1 1948665 1949984 D TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: she:Shewmr4_2269 lytic murein transglycosylase; lytic murein transglycosylase 1948665..1949984 Shewanella sp. W3-18-1 4661508 YP_963084.1 CDS Sputw3181_1693 NC_008750.1 1950091 1950582 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1995 peptidyl-prolyl cis-trans isomerase, FkbP family; peptidylprolyl isomerase, FKBP-type 1950091..1950582 Shewanella sp. W3-18-1 4661482 YP_963085.1 CDS Sputw3181_1694 NC_008750.1 1950702 1952660 R PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: shm:Shewmr7_2339 peptidase M1, membrane alanine aminopeptidase; peptidase M1, membrane alanine aminopeptidase complement(1950702..1952660) Shewanella sp. W3-18-1 4661434 YP_963086.1 CDS Sputw3181_1695 NC_008750.1 1952912 1953139 D KEGG: shm:Shewmr7_2338 hypothetical protein; hypothetical protein 1952912..1953139 Shewanella sp. W3-18-1 4661477 YP_963087.1 CDS Sputw3181_1696 NC_008750.1 1953228 1953899 D PFAM: phospholipase/Carboxylesterase; KEGG: son:SO1999 phospholipase/carboxylesterase family protein; carboxylesterase 1953228..1953899 Shewanella sp. W3-18-1 4661449 YP_963088.1 CDS ushA NC_008750.1 1954264 1955982 D catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 1954264..1955982 Shewanella sp. W3-18-1 4661428 YP_963089.1 CDS Sputw3181_1698 NC_008750.1 1956215 1956574 R KEGG: shm:Shewmr7_2334 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator complement(1956215..1956574) Shewanella sp. W3-18-1 4661418 YP_963090.1 CDS Sputw3181_1699 NC_008750.1 1956778 1957731 R PFAM: dihydrouridine synthase, DuS; KEGG: shm:Shewmr7_2333 dihydrouridine synthase, DuS; dihydrouridine synthase, DuS complement(1956778..1957731) Shewanella sp. W3-18-1 4661396 YP_963091.1 CDS Sputw3181_1700 NC_008750.1 1957976 1958386 D KEGG: shm:Shewmr7_2332 hypothetical protein; hypothetical protein 1957976..1958386 Shewanella sp. W3-18-1 4661369 YP_963092.1 CDS Sputw3181_1701 NC_008750.1 1958466 1959368 D PFAM: protein of unknown function DUF692; KEGG: son:SO2008 hypothetical protein; hypothetical protein 1958466..1959368 Shewanella sp. W3-18-1 4661385 YP_963093.1 CDS Sputw3181_1702 NC_008750.1 1959368 1960114 D KEGG: she:Shewmr4_2258 hypothetical protein; hypothetical protein 1959368..1960114 Shewanella sp. W3-18-1 4661357 YP_963094.1 CDS Sputw3181_1703 NC_008750.1 1960263 1960385 D KEGG: shm:Shewmr7_2329 hypothetical protein; hypothetical protein 1960263..1960385 Shewanella sp. W3-18-1 4661322 YP_963095.1 CDS Sputw3181_1704 NC_008750.1 1960467 1960832 D PFAM: protein of unknown function DUF454; KEGG: she:Shewmr4_2256 protein of unknown function DUF454; hypothetical protein 1960467..1960832 Shewanella sp. W3-18-1 4661349 YP_963096.1 CDS Sputw3181_1705 NC_008750.1 1961062 1961616 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1961062..1961616 Shewanella sp. W3-18-1 4661316 YP_963097.1 CDS Sputw3181_1706 NC_008750.1 1961654 1964608 D KEGG: son:SO2013 DNA polymerase III, gamma and tau subunits; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 1961654..1964608 Shewanella sp. W3-18-1 4661317 YP_963098.1 CDS Sputw3181_1707 NC_008750.1 1964778 1965107 D PFAM: conserved hypothetical protein 103; KEGG: she:Shewmr4_2253 conserved hypothetical protein 103; hypothetical protein 1964778..1965107 Shewanella sp. W3-18-1 4661172 YP_963099.1 CDS recR NC_008750.1 1965120 1965719 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1965120..1965719 Shewanella sp. W3-18-1 4661319 YP_963100.1 CDS Sputw3181_1709 NC_008750.1 1966018 1967931 D molecular chaperone; heat shock protein 90 1966018..1967931 Shewanella sp. W3-18-1 4661318 YP_963101.1 CDS Sputw3181_1710 NC_008750.1 1968176 1969039 D PFAM: Thioredoxin domain; KEGG: she:Shewmr4_2250 thioredoxin domain; thioredoxin domain-containing protein 1968176..1969039 Shewanella sp. W3-18-1 4661305 YP_963102.1 CDS adk NC_008750.1 1969181 1969825 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1969181..1969825 Shewanella sp. W3-18-1 4661300 YP_963103.1 CDS hemH NC_008750.1 1969906 1970949 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1969906..1970949 Shewanella sp. W3-18-1 4661302 YP_963104.1 CDS Sputw3181_1713 NC_008750.1 1971194 1972498 D PFAM: PfkB domain protein; KEGG: son:SO2020 inosine-guanosine kinase; inosine kinase 1971194..1972498 Shewanella sp. W3-18-1 4661296 YP_963105.1 CDS nadE NC_008750.1 1972705 1973535 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1972705..1973535 Shewanella sp. W3-18-1 4661299 YP_963106.1 CDS Sputw3181_1715 NC_008750.1 1973775 1974269 R KEGG: shm:Shewmr7_2317 hypothetical protein; hypothetical protein complement(1973775..1974269) Shewanella sp. W3-18-1 4661102 YP_963107.1 CDS Sputw3181_1716 NC_008750.1 1974858 1975724 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2297 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1974858..1975724) Shewanella sp. W3-18-1 4660043 YP_963108.1 CDS Sputw3181_1717 NC_008750.1 1975837 1976943 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: shm:Shewmr7_2296 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1975837..1976943 Shewanella sp. W3-18-1 4661158 YP_963109.1 CDS Sputw3181_1718 NC_008750.1 1977028 1978806 R PFAM: sulfatase; KEGG: she:Shewmr4_2219 sulfatase; sulfatase complement(1977028..1978806) Shewanella sp. W3-18-1 4661232 YP_963110.2 CDS Sputw3181_1719 NC_008750.1 1978870 1979088 R PFAM: protein of unknown function DUF1414; KEGG: shm:Shewmr7_2294 protein of unknown function DUF1414; hypothetical protein complement(1978870..1979088) Shewanella sp. W3-18-1 4661187 YP_963111.1 CDS Sputw3181_1720 NC_008750.1 1979166 1980194 D PFAM: 37 kDa nucleoid-associated protein; KEGG: son:SO2177 hypothetical protein; nucleoid-associated protein NdpA 1979166..1980194 Shewanella sp. W3-18-1 4661258 YP_963112.1 CDS Sputw3181_1721 NC_008750.1 1980284 1981285 R PFAM: Di-haem cytochrome c peroxidase; KEGG: son:SO2178 cytochrome c551 peroxidase; cytochrome-c peroxidase complement(1980284..1981285) Shewanella sp. W3-18-1 4661253 YP_963113.1 CDS Sputw3181_1722 NC_008750.1 1981786 1982667 D KEGG: shm:Shewmr7_2291 hypothetical protein; hypothetical protein 1981786..1982667 Shewanella sp. W3-18-1 4661241 YP_963114.1 CDS Sputw3181_1723 NC_008750.1 1982725 1983666 D PFAM: peptidase M23B; KEGG: son:SO2180 peptidase, M23/M37 family; peptidase M23B 1982725..1983666 Shewanella sp. W3-18-1 4661236 YP_963115.1 CDS Sputw3181_1724 NC_008750.1 1983774 1984034 R KEGG: shm:Shewmr7_2289 hypothetical protein; hypothetical protein complement(1983774..1984034) Shewanella sp. W3-18-1 4661060 YP_963116.1 CDS Sputw3181_1725 NC_008750.1 1984112 1984777 R PFAM: protein of unknown function DUF991; KEGG: son:SO2182 hypothetical protein; hypothetical protein complement(1984112..1984777) Shewanella sp. W3-18-1 4661228 YP_963117.1 CDS Sputw3181_1726 NC_008750.1 1984949 1985464 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: shm:Shewmr7_2287 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein complement(1984949..1985464) Shewanella sp. W3-18-1 4661240 YP_963118.1 CDS Sputw3181_1727 NC_008750.1 1985638 1986507 D PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: she:Shewmr4_2209 ion transport protein; Ion transport protein 1985638..1986507 Shewanella sp. W3-18-1 4661225 YP_963119.1 CDS Sputw3181_1728 NC_008750.1 1986550 1988145 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: she:Shewmr4_1623 MATE efflux family protein; MATE efflux family protein 1986550..1988145 Shewanella sp. W3-18-1 4661211 YP_963120.1 CDS Sputw3181_1729 NC_008750.1 1988240 1988437 R KEGG: son:SO1921 hypothetical protein; hypothetical protein complement(1988240..1988437) Shewanella sp. W3-18-1 4661210 YP_963121.1 CDS Sputw3181_1730 NC_008750.1 1988758 1989069 D PFAM: uncharacterized conserved protein UCP029143; KEGG: she:Shewmr4_1625 uncharacterized conserved protein UCP029143; hypothetical protein 1988758..1989069 Shewanella sp. W3-18-1 4661150 YP_963122.1 CDS Sputw3181_1731 NC_008750.1 1989150 1992197 R PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1627 acriflavin resistance protein; acriflavin resistance protein complement(1989150..1992197) Shewanella sp. W3-18-1 4660411 YP_963123.1 CDS Sputw3181_1732 NC_008750.1 1992194 1995445 R PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1628 acriflavin resistance protein; acriflavin resistance protein complement(1992194..1995445) Shewanella sp. W3-18-1 4660405 YP_963124.1 CDS Sputw3181_1733 NC_008750.1 1995459 1996523 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1925 HlyD family secretion protein; RND family efflux transporter MFP subunit complement(1995459..1996523) Shewanella sp. W3-18-1 4660401 YP_963125.1 CDS gltA NC_008750.1 1996845 1998131 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(1996845..1998131) Shewanella sp. W3-18-1 4660351 YP_963126.1 CDS Sputw3181_1735 NC_008750.1 1998548 1998943 D PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: shm:Shewmr7_1706 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome subunit B 1998548..1998943 Shewanella sp. W3-18-1 4659833 YP_963127.1 CDS Sputw3181_1736 NC_008750.1 1998937 1999284 D KEGG: she:Shewmr4_1632 conserved hypothetical succinate dehydrogenase, hydrophobic subunit; putative succinate dehydrogenase, hydrophobic subunit 1998937..1999284 Shewanella sp. W3-18-1 4659820 YP_963128.1 CDS sdhA NC_008750.1 1999285 2001051 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1999285..2001051 Shewanella sp. W3-18-1 4659799 YP_963129.1 CDS sdhB NC_008750.1 2001063 2001770 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 2001063..2001770 Shewanella sp. W3-18-1 4661372 YP_963130.1 CDS sucA NC_008750.1 2001986 2004805 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2001986..2004805 Shewanella sp. W3-18-1 4659852 YP_963131.1 CDS Sputw3181_1740 NC_008750.1 2004837 2006039 D TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: she:Shewmr4_1636 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 2004837..2006039 Shewanella sp. W3-18-1 4659135 YP_963132.1 CDS sucC NC_008750.1 2006116 2007282 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2006116..2007282 Shewanella sp. W3-18-1 4661407 YP_963133.1 CDS Sputw3181_1742 NC_008750.1 2007282 2008154 D TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: son:SO1933 succinyl-CoA synthetase alpha chain; succinyl-CoA synthetase subunit alpha 2007282..2008154 Shewanella sp. W3-18-1 4659124 YP_963134.1 CDS Sputw3181_1743 NC_008750.1 2008556 2008963 D PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: shm:Shewmr7_1714 GreA/GreB family elongation factor; GreA/GreB family elongation factor 2008556..2008963 Shewanella sp. W3-18-1 4661549 YP_963135.1 CDS Sputw3181_1744 NC_008750.1 2009029 2009526 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1936 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2009029..2009526 Shewanella sp. W3-18-1 4659103 YP_963136.1 CDS fur NC_008750.1 2009622 2010053 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator complement(2009622..2010053) Shewanella sp. W3-18-1 4659096 YP_963137.1 CDS Sputw3181_1746 NC_008750.1 2010310 2011044 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2010310..2011044 Shewanella sp. W3-18-1 4659094 YP_963138.1 CDS Sputw3181_1747 NC_008750.1 2011041 2011490 D KEGG: she:Shewmr4_1643 hypothetical protein; hypothetical protein 2011041..2011490 Shewanella sp. W3-18-1 4658604 YP_963139.1 CDS Sputw3181_1748 NC_008750.1 2011608 2012009 D KEGG: son:SO1940 hypothetical protein; hypothetical protein 2011608..2012009 Shewanella sp. W3-18-1 4658602 YP_963140.1 CDS Sputw3181_1749 NC_008750.1 2012136 2013083 D TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: shm:Shewmr7_1720 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 2012136..2013083 Shewanella sp. W3-18-1 4660421 YP_963141.1 CDS Sputw3181_1750 NC_008750.1 2013143 2014405 R KEGG: son:SO1942 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(2013143..2014405) Shewanella sp. W3-18-1 4657804 YP_963142.1 CDS Sputw3181_1751 NC_008750.1 2014521 2015216 D SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO1944 hypothetical protein; prolyl 4-hydroxylase subunit alpha 2014521..2015216 Shewanella sp. W3-18-1 4657817 YP_963143.1 CDS Sputw3181_1752 NC_008750.1 2015233 2016582 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1945 sensor protein PhoQ; integral membrane sensor signal transduction histidine kinase complement(2015233..2016582) Shewanella sp. W3-18-1 4657879 YP_963144.1 CDS Sputw3181_1753 NC_008750.1 2016573 2017247 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_1655 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2016573..2017247) Shewanella sp. W3-18-1 4657882 YP_963145.1 CDS Sputw3181_1754 NC_008750.1 2017418 2017777 R KEGG: she:Shewmr4_1581 hypothetical protein; hypothetical protein complement(2017418..2017777) Shewanella sp. W3-18-1 4657916 YP_963146.1 CDS Sputw3181_1755 NC_008750.1 2017945 2019270 R PFAM: sodium:dicarboxylate symporter; KEGG: she:Shewmr4_1582 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(2017945..2019270) Shewanella sp. W3-18-1 4657927 YP_963147.1 CDS Sputw3181_1756 NC_008750.1 2019487 2022042 D PFAM: Ig domain protein, group 1 domain protein; KEGG: sdn:Sden_2330 Ig-like, group 1; Ig domain-containing protein 2019487..2022042 Shewanella sp. W3-18-1 4657940 YP_963148.1 CDS Sputw3181_1757 NC_008750.1 2022104 2023438 R catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase complement(2022104..2023438) Shewanella sp. W3-18-1 4657989 YP_963149.1 CDS Sputw3181_1758 NC_008750.1 2023767 2026409 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2023767..2026409 Shewanella sp. W3-18-1 4658003 YP_963150.1 CDS Sputw3181_1759 NC_008750.1 2026595 2027374 R KEGG: she:Shewmr4_1586 hypothetical protein; hypothetical protein complement(2026595..2027374) Shewanella sp. W3-18-1 4658008 YP_963151.1 CDS cysB NC_008750.1 2027603 2028580 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 2027603..2028580 Shewanella sp. W3-18-1 4658065 YP_963152.1 CDS Sputw3181_1761 NC_008750.1 2028663 2029325 R PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: she:Shewmr4_1588 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(2028663..2029325) Shewanella sp. W3-18-1 4658095 YP_963153.1 CDS Sputw3181_1762 NC_008750.1 2029547 2029978 R PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_1664 thioesterase superfamily protein; thioesterase superfamily protein complement(2029547..2029978) Shewanella sp. W3-18-1 4658100 YP_963154.1 CDS Sputw3181_1763 NC_008750.1 2030133 2031206 R tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2030133..2031206) Shewanella sp. W3-18-1 4658109 YP_963155.1 CDS Sputw3181_1764 NC_008750.1 2031389 2032201 R PFAM: protein of unknown function DUF299; KEGG: shm:Shewmr7_1666 protein of unknown function DUF299; hypothetical protein complement(2031389..2032201) Shewanella sp. W3-18-1 4658110 YP_963156.1 CDS Sputw3181_1765 NC_008750.1 2032326 2034695 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2032326..2034695 Shewanella sp. W3-18-1 4658119 YP_963157.1 CDS Sputw3181_1766 NC_008750.1 2034793 2037834 D PFAM: FAD linked oxidase domain protein; KEGG: she:Shewmr4_1593 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 2034793..2037834 Shewanella sp. W3-18-1 4658166 YP_963158.1 CDS Sputw3181_1767 NC_008750.1 2038033 2039406 D PFAM: transposase Tn5, dimerisation domain protein; KEGG: ppr:PBPRB0910 hypothetical transposase; transposase Tn5 dimerisation subunit 2038033..2039406 Shewanella sp. W3-18-1 4658181 YP_963159.1 CDS Sputw3181_1768 NC_008750.1 2039456 2039929 D PFAM: protein of unknown function DUF1285; KEGG: son:SO2642 hypothetical protein; hypothetical protein 2039456..2039929 Shewanella sp. W3-18-1 4658198 YP_963160.1 CDS Sputw3181_1769 NC_008750.1 2040017 2040490 D PFAM: regulatory protein, MarR; KEGG: son:SO2640 transcriptional regulator, MarR family; MarR family transcriptional regulator 2040017..2040490 Shewanella sp. W3-18-1 4657741 YP_963161.1 CDS Sputw3181_1770 NC_008750.1 2040627 2040971 R KEGG: shm:Shewmr7_1672 hypothetical protein; hypothetical protein complement(2040627..2040971) Shewanella sp. W3-18-1 4658216 YP_963162.1 CDS Sputw3181_1771 NC_008750.1 2041163 2042197 R PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: she:Shewmr4_1598 Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Glu/Leu/Phe/Val dehydrogenase complement(2041163..2042197) Shewanella sp. W3-18-1 4658224 YP_963163.1 CDS Sputw3181_1772 NC_008750.1 2042478 2042927 D KEGG: son:SO2637 hypothetical protein; hypothetical protein 2042478..2042927 Shewanella sp. W3-18-1 4658235 YP_963164.1 CDS Sputw3181_1773 NC_008750.1 2043106 2044245 R PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: she:Shewmr4_1600 cupin 4 family protein; cupin 4 family protein complement(2043106..2044245) Shewanella sp. W3-18-1 4657747 YP_963165.1 CDS Sputw3181_1774 NC_008750.1 2044398 2045768 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2044398..2045768) Shewanella sp. W3-18-1 4658270 YP_963166.1 CDS Sputw3181_1775 NC_008750.1 2045798 2046415 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(2045798..2046415) Shewanella sp. W3-18-1 4658275 YP_963167.1 CDS mnmA NC_008750.1 2046419 2047537 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2046419..2047537) Shewanella sp. W3-18-1 4658292 YP_963168.1 CDS Sputw3181_1777 NC_008750.1 2047750 2048244 R PFAM: NUDIX hydrolase; KEGG: son:SO2631 MutT/nudix family protein; NUDIX hydrolase complement(2047750..2048244) Shewanella sp. W3-18-1 4657756 YP_963169.1 CDS Sputw3181_1778 NC_008750.1 2048312 2049124 R PFAM: pseudouridine synthase; KEGG: she:Shewmr4_1605 pseudouridine synthase, Rsu; pseudouridylate synthase complement(2048312..2049124) Shewanella sp. W3-18-1 4658309 YP_963170.1 CDS Sputw3181_1779 NC_008750.1 2049441 2051666 D KEGG: shm:Shewmr7_1681 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase 2049441..2051666 Shewanella sp. W3-18-1 4658313 YP_963171.1 CDS clpS NC_008750.1 2052387 2052695 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2052387..2052695 Shewanella sp. W3-18-1 4660284 YP_963172.1 CDS Sputw3181_1782 NC_008750.1 2052739 2055006 D KEGG: son:SO2626 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2052739..2055006 Shewanella sp. W3-18-1 4658426 YP_963173.1 CDS infA NC_008750.1 2055122 2055340 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2055122..2055340) Shewanella sp. W3-18-1 4657775 YP_963174.1 CDS Sputw3181_1784 NC_008750.1 2055432 2056166 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(2055432..2056166) Shewanella sp. W3-18-1 4658368 YP_963175.1 CDS aat NC_008750.1 2056129 2056839 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(2056129..2056839) Shewanella sp. W3-18-1 4661293 YP_963176.1 CDS Sputw3181_1786 NC_008750.1 2056894 2057364 D PFAM: 17 kDa surface antigen; KEGG: she:Shewmr4_1652 17 kDa surface antigen; 17 kDa surface antigen 2056894..2057364 Shewanella sp. W3-18-1 4661269 YP_963177.1 CDS Sputw3181_1787 NC_008750.1 2057408 2058160 D PFAM: protein of unknown function DUF34; KEGG: son:SO2621 conserved hypothetical protein TIGR00486; hypothetical protein 2057408..2058160 Shewanella sp. W3-18-1 4658465 YP_963178.1 CDS Sputw3181_1788 NC_008750.1 2058222 2059178 R PFAM: Auxin Efflux Carrier; KEGG: she:Shewmr4_1654 auxin efflux carrier; auxin efflux carrier complement(2058222..2059178) Shewanella sp. W3-18-1 4658535 YP_963179.1 CDS metG NC_008750.1 2059268 2061337 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(2059268..2061337) Shewanella sp. W3-18-1 4658544 YP_963180.1 CDS Sputw3181_1790 NC_008750.1 2061492 2062613 D KEGG: son:SO2618 ATP-binding protein, Mrp/Nbp35 family; ATP-binding Mrp/Nbp35 family protein 2061492..2062613 Shewanella sp. W3-18-1 4659030 YP_963181.1 CDS Sputw3181_1791 NC_008750.1 2062625 2063263 D functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2062625..2063263 Shewanella sp. W3-18-1 4658631 YP_963182.1 CDS dcd NC_008750.1 2063295 2063876 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2063295..2063876 Shewanella sp. W3-18-1 4658668 YP_963183.1 CDS Sputw3181_1793 NC_008750.1 2063882 2064691 D PFAM: aminotransferase, class IV; KEGG: son:SO2615 4-amino-4-deoxychorismate lyase; aminotransferase, class IV 2063882..2064691 Shewanella sp. W3-18-1 4658674 YP_963184.1 CDS Sputw3181_1794 NC_008750.1 2064688 2065725 D PFAM: aminodeoxychorismate lyase; KEGG: shm:Shewmr7_1735 aminodeoxychorismate lyase; aminodeoxychorismate lyase 2064688..2065725 Shewanella sp. W3-18-1 4658676 YP_963185.1 CDS tmk NC_008750.1 2065748 2066374 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2065748..2066374 Shewanella sp. W3-18-1 4658449 YP_963186.1 CDS Sputw3181_1796 NC_008750.1 2066368 2067324 D TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: she:Shewmr4_1662 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' 2066368..2067324 Shewanella sp. W3-18-1 4658687 YP_963187.1 CDS Sputw3181_1797 NC_008750.1 2067331 2067657 D KEGG: shm:Shewmr7_1738 type IV pilus biogenesis protein PilZ; type IV pilus biogenesis protein PilZ 2067331..2067657 Shewanella sp. W3-18-1 4658447 YP_963188.1 CDS Sputw3181_1798 NC_008750.1 2067703 2068545 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: shm:Shewmr7_1739 hydrolase, TatD family; TatD family hydrolase 2067703..2068545 Shewanella sp. W3-18-1 4658437 YP_963189.1 CDS yebU NC_008750.1 2068852 2070369 R in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF complement(2068852..2070369) Shewanella sp. W3-18-1 4658436 YP_963190.1 CDS Sputw3181_1800 NC_008750.1 2070534 2071760 D PFAM: nucleoside recognition domain protein; KEGG: she:Shewmr4_1666 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 2070534..2071760 Shewanella sp. W3-18-1 4658417 YP_963191.1 CDS Sputw3181_1801 NC_008750.1 2071857 2074502 R PFAM: Mammalian cell entry related domain protein; KEGG: she:Shewmr4_1667 mammalian cell entry related domain protein; hypothetical protein complement(2071857..2074502) Shewanella sp. W3-18-1 4658424 YP_963192.1 CDS Sputw3181_1802 NC_008750.1 2074489 2075121 R PFAM: Paraquat-inducible protein A; KEGG: shm:Shewmr7_1743 paraquat-inducible protein A; paraquat-inducible protein A complement(2074489..2075121) Shewanella sp. W3-18-1 4658420 YP_963193.1 CDS Sputw3181_1803 NC_008750.1 2075108 2075740 R PFAM: Paraquat-inducible protein A; KEGG: she:Shewmr4_1669 paraquat-inducible protein A; paraquat-inducible protein A complement(2075108..2075740) Shewanella sp. W3-18-1 4658708 YP_963194.1 CDS Sputw3181_1804 NC_008750.1 2075948 2076247 D PFAM: YebG family protein; KEGG: shm:Shewmr7_1745 YebG family protein; hypothetical protein 2075948..2076247 Shewanella sp. W3-18-1 4658712 YP_963195.1 CDS Sputw3181_1805 NC_008750.1 2076266 2076724 D PFAM: GAF domain protein; KEGG: shm:Shewmr7_1746 putative GAF sensor protein; putative GAF sensor protein 2076266..2076724 Shewanella sp. W3-18-1 4658713 YP_963196.1 CDS Sputw3181_1806 NC_008750.1 2077004 2077645 D affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 2077004..2077645 Shewanella sp. W3-18-1 4658394 YP_963197.1 CDS Sputw3181_1807 NC_008750.1 2077674 2079719 D Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 2077674..2079719 Shewanella sp. W3-18-1 4658377 YP_963198.1 CDS pepN NC_008750.1 2079802 2082351 D TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: she:Shewmr4_1674 aminopeptidase N; aminopeptidase N 2079802..2082351 Shewanella sp. W3-18-1 4658719 YP_963199.1 CDS Sputw3181_1809 NC_008750.1 2082379 2082612 D KEGG: son:SO2598 hypothetical protein; hypothetical protein 2082379..2082612 Shewanella sp. W3-18-1 4658378 YP_963200.1 CDS Sputw3181_1810 NC_008750.1 2082951 2084993 D PFAM: protein of unknown function DUF1302; KEGG: son:SO2597 hypothetical protein; hypothetical protein 2082951..2084993 Shewanella sp. W3-18-1 4658348 YP_963201.1 CDS Sputw3181_1811 NC_008750.1 2085007 2086371 D PFAM: protein of unknown function DUF1329; KEGG: she:Shewmr4_1677 protein of unknown function DUF1329; hypothetical protein 2085007..2086371 Shewanella sp. W3-18-1 4658361 YP_963202.1 CDS Sputw3181_1812 NC_008750.1 2086425 2087438 D KEGG: son:SO2595 BNR repeat protein; BNR repeat-containing protein 2086425..2087438 Shewanella sp. W3-18-1 4658336 YP_963203.1 CDS Sputw3181_1813 NC_008750.1 2087471 2089786 D KEGG: shm:Shewmr7_1754 hypothetical protein; hypothetical protein 2087471..2089786 Shewanella sp. W3-18-1 4658751 YP_963204.1 CDS Sputw3181_1814 NC_008750.1 2090049 2094893 D PFAM: NAD-glutamate dehydrogenase; KEGG: shm:Shewmr7_1755 NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase 2090049..2094893 Shewanella sp. W3-18-1 4658784 YP_963205.1 CDS Sputw3181_1815 NC_008750.1 2094956 2095975 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2094956..2095975 Shewanella sp. W3-18-1 4658805 YP_963206.1 CDS Sputw3181_1816 NC_008750.1 2096176 2096709 D PFAM: protein of unknown function DUF1379; KEGG: she:Shewmr4_1682 protein of unknown function DUF1379; hypothetical protein 2096176..2096709 Shewanella sp. W3-18-1 4658824 YP_963207.1 CDS Sputw3181_1817 NC_008750.1 2096771 2096863 R KEGG: vpa:VP1842 RelB protein; RelB protein complement(2096771..2096863) Shewanella sp. W3-18-1 4658839 YP_963208.1 CDS Sputw3181_1818 NC_008750.1 2097047 2097376 D hypothetical protein 2097047..2097376 Shewanella sp. W3-18-1 4658846 YP_963209.1 CDS Sputw3181_1819 NC_008750.1 2097449 2097961 D hypothetical protein 2097449..2097961 Shewanella sp. W3-18-1 4658892 YP_963210.1 CDS Sputw3181_1820 NC_008750.1 2098277 2098642 R PFAM: uncharacterized conserved protein UCP025560; KEGG: shm:Shewmr7_2188 uncharacterized conserved protein UCP025560; hypothetical protein complement(2098277..2098642) Shewanella sp. W3-18-1 4658897 YP_963211.1 CDS Sputw3181_1821 NC_008750.1 2098668 2098886 R KEGG: son:SO2063 hypothetical protein; hypothetical protein complement(2098668..2098886) Shewanella sp. W3-18-1 4658903 YP_963212.1 CDS Sputw3181_1822 NC_008750.1 2098900 2102112 R KEGG: she:Shewmr4_1791 hypothetical protein; hypothetical protein complement(2098900..2102112) Shewanella sp. W3-18-1 4658907 YP_963213.1 CDS Sputw3181_1823 NC_008750.1 2102403 2103590 R TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: she:Shewmr4_1792 aromatic amino acid transporter; aromatic amino acid transporter complement(2102403..2103590) Shewanella sp. W3-18-1 4658914 YP_963214.1 CDS Sputw3181_1824 NC_008750.1 2104108 2104749 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase complement(2104108..2104749) Shewanella sp. W3-18-1 4658930 YP_963215.1 CDS Sputw3181_1825 NC_008750.1 2104839 2105612 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(2104839..2105612) Shewanella sp. W3-18-1 4658939 YP_963216.1 CDS Sputw3181_1826 NC_008750.1 2105594 2106331 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(2105594..2106331) Shewanella sp. W3-18-1 4658953 YP_963217.1 CDS hisH NC_008750.1 2106402 2107214 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(2106402..2107214) Shewanella sp. W3-18-1 4658983 YP_963218.1 CDS Sputw3181_1828 NC_008750.1 2107246 2108337 R catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase complement(2107246..2108337) Shewanella sp. W3-18-1 4657760 YP_963219.1 CDS Sputw3181_1829 NC_008750.1 2108367 2109530 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(2108367..2109530) Shewanella sp. W3-18-1 4659034 YP_963220.1 CDS hisD NC_008750.1 2109591 2110913 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(2109591..2110913) Shewanella sp. W3-18-1 4659596 YP_963221.1 CDS hisG NC_008750.1 2110917 2111912 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(2110917..2111912) Shewanella sp. W3-18-1 4659669 YP_963222.1 CDS Sputw3181_1832 NC_008750.1 2112319 2112966 R PFAM: protein of unknown function DUF938; KEGG: son:SO2050 hypothetical protein; hypothetical protein complement(2112319..2112966) Shewanella sp. W3-18-1 4659043 YP_963223.1 CDS Sputw3181_1833 NC_008750.1 2113472 2114761 D PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_2193 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2113472..2114761 Shewanella sp. W3-18-1 4659036 YP_963224.1 CDS Sputw3181_1834 NC_008750.1 2114814 2115692 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2192 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2114814..2115692) Shewanella sp. W3-18-1 4659016 YP_963225.1 CDS Sputw3181_1835 NC_008750.1 2115868 2117007 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: shm:Shewmr7_2191 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 2115868..2117007 Shewanella sp. W3-18-1 4659025 YP_963226.1 CDS Sputw3181_1836 NC_008750.1 2117173 2118015 D PFAM: putative esterase; KEGG: shm:Shewmr7_2190 carboxylesterase; carboxylesterase 2117173..2118015 Shewanella sp. W3-18-1 4659020 YP_963227.1 CDS Sputw3181_1837 NC_008750.1 2118134 2119510 R KEGG: shm:Shewmr7_1804 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(2118134..2119510) Shewanella sp. W3-18-1 4659196 YP_963228.1 CDS Sputw3181_1839 NC_008750.1 2119900 2120928 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 2119900..2120928 Shewanella sp. W3-18-1 4660268 YP_963229.1 CDS Sputw3181_1840 NC_008750.1 2120986 2121543 D PFAM: protein of unknown function UPF0227; KEGG: son:SO2251 conserved hypothetical protein; hypothetical protein 2120986..2121543 Shewanella sp. W3-18-1 4659199 YP_963230.1 CDS Sputw3181_1841 NC_008750.1 2122176 2122724 R PFAM: protein of unknown function UPF0167; KEGG: son:SO0898 hypothetical protein; hypothetical protein complement(2122176..2122724) Shewanella sp. W3-18-1 4659000 YP_963231.1 CDS Sputw3181_1842 NC_008750.1 2122819 2123256 R PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_0928 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2122819..2123256) Shewanella sp. W3-18-1 4658985 YP_963232.1 CDS Sputw3181_1843 NC_008750.1 2123403 2123669 R KEGG: atc:AGR_L_16 hypothetical protein; hypothetical protein complement(2123403..2123669) Shewanella sp. W3-18-1 4658982 YP_963233.1 CDS Sputw3181_1844 NC_008750.1 2123674 2123889 R KEGG: atc:AGR_L_17 hypothetical protein; hypothetical protein complement(2123674..2123889) Shewanella sp. W3-18-1 4658978 YP_963234.1 CDS Sputw3181_1845 NC_008750.1 2124313 2125431 R PFAM: putative transposase; KEGG: son:SO2212 transposase, IS91 family, putative; putative transposase complement(2124313..2125431) Shewanella sp. W3-18-1 4658593 YP_963235.1 CDS Sputw3181_1846 NC_008750.1 2125410 2126273 R PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO2036 site-specific recombinase, phage integrase family; phage integrase family protein complement(2125410..2126273) Shewanella sp. W3-18-1 4658964 YP_963236.1 CDS Sputw3181_1847 NC_008750.1 2126728 2126901 D KEGG: she:Shewmr4_1443 hypothetical protein; hypothetical protein 2126728..2126901 Shewanella sp. W3-18-1 4658597 YP_963237.1 CDS Sputw3181_1848 NC_008750.1 2127190 2129466 D KEGG: son:SO1424 hypothetical protein; hypothetical protein 2127190..2129466 Shewanella sp. W3-18-1 4658963 YP_963238.1 CDS Sputw3181_1849 NC_008750.1 2129476 2131176 D KEGG: son:SO1425 hypothetical protein; hypothetical protein 2129476..2131176 Shewanella sp. W3-18-1 4658960 YP_963239.1 CDS Sputw3181_1850 NC_008750.1 2131337 2132710 D PFAM: transposase Tn5, dimerisation domain protein; KEGG: ppr:PBPRB0910 hypothetical transposase; transposase Tn5 dimerisation subunit 2131337..2132710 Shewanella sp. W3-18-1 4659216 YP_963240.1 CDS Sputw3181_1851 NC_008750.1 2133311 2133586 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 2133311..2133586 Shewanella sp. W3-18-1 4658596 YP_963241.1 CDS Sputw3181_1852 NC_008750.1 2133672 2134682 R KEGG: son:SO2254 hypothetical protein; hypothetical protein complement(2133672..2134682) Shewanella sp. W3-18-1 4659234 YP_963242.1 CDS Sputw3181_1853 NC_008750.1 2134682 2138170 R KEGG: shm:Shewmr7_1810 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor complement(2134682..2138170) Shewanella sp. W3-18-1 4659239 YP_963243.1 CDS Sputw3181_1854 NC_008750.1 2138258 2138863 R KEGG: son:SO2256 hypothetical protein; hypothetical protein complement(2138258..2138863) Shewanella sp. W3-18-1 4659241 YP_963244.1 CDS Sputw3181_1855 NC_008750.1 2138958 2140190 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: she:Shewmr4_1732 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 2138958..2140190 Shewanella sp. W3-18-1 4659245 YP_963245.1 CDS Sputw3181_1856 NC_008750.1 2140272 2140967 D KEGG: shm:Shewmr7_1813 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 2140272..2140967 Shewanella sp. W3-18-1 4659252 YP_963246.1 CDS Sputw3181_1857 NC_008750.1 2140964 2142214 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: she:Shewmr4_1734 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 2140964..2142214 Shewanella sp. W3-18-1 4659283 YP_963247.1 CDS Sputw3181_1858 NC_008750.1 2142318 2143121 R PFAM: inositol monophosphatase; KEGG: shm:Shewmr7_1815 inositol-phosphate phosphatase; inositol-phosphate phosphatase complement(2142318..2143121) Shewanella sp. W3-18-1 4659326 YP_963248.1 CDS Sputw3181_1859 NC_008750.1 2143275 2144000 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO2261 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase 2143275..2144000 Shewanella sp. W3-18-1 4659356 YP_963249.1 CDS Sputw3181_1860 NC_008750.1 2144042 2144863 D TIGRFAM: serine O-acetyltransferase; KEGG: shm:Shewmr7_1817 serine O-acetyltransferase; serine O-acetyltransferase 2144042..2144863 Shewanella sp. W3-18-1 4659390 YP_963250.1 CDS Sputw3181_1861 NC_008750.1 2145213 2145674 D TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: son:SO2263 Rrf2 family protein; BadM/Rrf2 family transcriptional regulator 2145213..2145674 Shewanella sp. W3-18-1 4659406 YP_963251.1 CDS Sputw3181_1862 NC_008750.1 2145751 2146965 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 2145751..2146965 Shewanella sp. W3-18-1 4659407 YP_963252.1 CDS Sputw3181_1863 NC_008750.1 2147004 2147387 D TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: shm:Shewmr7_1820 FeS cluster assembly scaffold IscU; scaffold protein 2147004..2147387 Shewanella sp. W3-18-1 4659438 YP_963253.1 CDS Sputw3181_1864 NC_008750.1 2147402 2147725 D TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: shm:Shewmr7_1821 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA 2147402..2147725 Shewanella sp. W3-18-1 4659452 YP_963254.1 CDS hscB NC_008750.1 2147742 2148266 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 2147742..2148266 Shewanella sp. W3-18-1 4659453 YP_963255.1 CDS hscA NC_008750.1 2148335 2150197 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2148335..2150197 Shewanella sp. W3-18-1 4659459 YP_963256.1 CDS Sputw3181_1867 NC_008750.1 2150206 2150544 D TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: shm:Shewmr7_1824 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system 2150206..2150544 Shewanella sp. W3-18-1 4659464 YP_963257.1 CDS Sputw3181_1868 NC_008750.1 2150703 2151608 D TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: shm:Shewmr7_1825 alpha-L-glutamate ligases, RimK family; alpha-L-glutamate ligase 2150703..2151608 Shewanella sp. W3-18-1 4659474 YP_963258.1 CDS Sputw3181_1869 NC_008750.1 2151679 2151876 D PFAM: protein of unknown function DUF528; KEGG: shm:Shewmr7_1826 protein of unknown function DUF528; hypothetical protein 2151679..2151876 Shewanella sp. W3-18-1 4659477 YP_963259.1 CDS ndk NC_008750.1 2152472 2152903 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2152472..2152903 Shewanella sp. W3-18-1 4659141 YP_963260.1 CDS Sputw3181_1871 NC_008750.1 2153141 2153584 D PFAM: heat shock protein Hsp20; KEGG: son:SO2277 16 kDa heat shock protein A; heat shock protein Hsp20 2153141..2153584 Shewanella sp. W3-18-1 4659144 YP_963261.1 CDS ilvH NC_008750.1 2153655 2154149 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(2153655..2154149) Shewanella sp. W3-18-1 4659515 YP_963262.1 CDS Sputw3181_1873 NC_008750.1 2154149 2155867 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: she:Shewmr4_1750 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase 3 catalytic subunit complement(2154149..2155867) Shewanella sp. W3-18-1 4659149 YP_963263.1 CDS Sputw3181_1874 NC_008750.1 2156000 2156236 R hypothetical protein complement(2156000..2156236) Shewanella sp. W3-18-1 4659526 YP_963264.1 CDS Sputw3181_1875 NC_008750.1 2156282 2157502 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_1751 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter complement(2156282..2157502) Shewanella sp. W3-18-1 4659528 YP_963265.1 CDS Sputw3181_1876 NC_008750.1 2157974 2159848 D KEGG: she:Shewmr4_1752 alkaline phosphatase; alkaline phosphatase 2157974..2159848 Shewanella sp. W3-18-1 4659530 YP_963266.1 CDS Sputw3181_1877 NC_008750.1 2159975 2161324 R PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: she:Shewmr4_1753 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2159975..2161324) Shewanella sp. W3-18-1 4659531 YP_963267.1 CDS Sputw3181_1878 NC_008750.1 2161432 2162058 D KEGG: shm:Shewmr7_1834 lysine exporter protein (LysE/YggA); lysine exporter protein (LysE/YggA) 2161432..2162058 Shewanella sp. W3-18-1 4659535 YP_963268.1 CDS Sputw3181_1879 NC_008750.1 2162239 2164011 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: she:Shewmr4_1755 sulphate transporter; sulfate transporter 2162239..2164011 Shewanella sp. W3-18-1 4659551 YP_963269.1 CDS Sputw3181_1880 NC_008750.1 2164077 2164283 R KEGG: shm:Shewmr7_1836 hypothetical protein; hypothetical protein complement(2164077..2164283) Shewanella sp. W3-18-1 4661580 YP_963270.1 CDS Sputw3181_1881 NC_008750.1 2164687 2165691 D PFAM: Rhodanese domain protein; KEGG: she:Shewmr4_1760 rhodanese domain protein; hypothetical protein 2164687..2165691 Shewanella sp. W3-18-1 4660248 YP_963271.1 CDS Sputw3181_1882 NC_008750.1 2165892 2166362 D KEGG: shm:Shewmr7_1839 hypothetical protein; hypothetical protein 2165892..2166362 Shewanella sp. W3-18-1 4660247 YP_963272.1 CDS Sputw3181_1883 NC_008750.1 2166476 2166739 R KEGG: son:SO2479 hypothetical protein; hypothetical protein complement(2166476..2166739) Shewanella sp. W3-18-1 4659772 YP_963273.1 CDS Sputw3181_1884 NC_008750.1 2166775 2167512 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(2166775..2167512) Shewanella sp. W3-18-1 4659687 YP_963274.1 CDS Sputw3181_1885 NC_008750.1 2167745 2168362 R PFAM: carbonic anhydrase; KEGG: she:Shewmr4_1854 carbonate dehydratase; carbonate dehydratase complement(2167745..2168362) Shewanella sp. W3-18-1 4659674 YP_963275.1 CDS Sputw3181_1886 NC_008750.1 2168482 2169324 R PFAM: alpha/beta hydrolase fold; KEGG: son:SO2473 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold domain-containing protein complement(2168482..2169324) Shewanella sp. W3-18-1 4659675 YP_963276.1 CDS Sputw3181_1887 NC_008750.1 2169379 2170095 R PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: son:SO2472 D-alanyl-D-alanine carboxypeptidase-related protein; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin complement(2169379..2170095) Shewanella sp. W3-18-1 4659891 YP_963277.1 CDS Sputw3181_1888 NC_008750.1 2170089 2171228 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(2170089..2171228) Shewanella sp. W3-18-1 4659663 YP_963278.1 CDS Sputw3181_1889 NC_008750.1 2171228 2171635 R PFAM: arsenate reductase; KEGG: shm:Shewmr7_2120 hypothetical protein; arsenate reductase complement(2171228..2171635) Shewanella sp. W3-18-1 4659664 YP_963279.1 CDS Sputw3181_1890 NC_008750.1 2171686 2173554 R PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis protein domain protein; KEGG: vvu:VV21623 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2171686..2173554) Shewanella sp. W3-18-1 4659645 YP_963280.1 CDS Sputw3181_1891 NC_008750.1 2173780 2175390 R KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase complement(2173780..2175390) Shewanella sp. W3-18-1 4659901 YP_963281.1 CDS Sputw3181_1892 NC_008750.1 2175638 2176147 R functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter complement(2175638..2176147) Shewanella sp. W3-18-1 4659627 YP_963282.1 CDS Sputw3181_1893 NC_008750.1 2176221 2177924 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: she:Shewmr4_1764 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase complement(2176221..2177924) Shewanella sp. W3-18-1 4659644 YP_963283.1 CDS Sputw3181_1894 NC_008750.1 2177968 2178225 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: son:SO2238 phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr complement(2177968..2178225) Shewanella sp. W3-18-1 4659613 YP_963284.1 CDS Sputw3181_1895 NC_008750.1 2178248 2178643 R KEGG: shm:Shewmr7_1844 hypothetical protein; hypothetical protein complement(2178248..2178643) Shewanella sp. W3-18-1 4659621 YP_963285.1 CDS Sputw3181_1896 NC_008750.1 2178776 2180413 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: shm:Shewmr7_1845 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2178776..2180413) Shewanella sp. W3-18-1 4659611 YP_963286.1 CDS Sputw3181_1897 NC_008750.1 2180773 2181495 D KEGG: son:SO2241 hypothetical protein; hypothetical protein 2180773..2181495 Shewanella sp. W3-18-1 4659592 YP_963287.1 CDS Sputw3181_1898 NC_008750.1 2181568 2182206 R KEGG: son:SO2245 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(2181568..2182206) Shewanella sp. W3-18-1 4659608 YP_963288.1 CDS Sputw3181_1899 NC_008750.1 2182287 2182679 R KEGG: son:SO2146 hypothetical protein; hypothetical protein complement(2182287..2182679) Shewanella sp. W3-18-1 4659922 YP_963289.1 CDS Sputw3181_1900 NC_008750.1 2182692 2184752 R KEGG: shm:Shewmr7_1851 exodeoxyribonuclease V, alpha subunit; TIGRFAM: exodeoxyribonuclease V, alpha subunit; SMART: AAA ATPase; exodeoxyribonuclease V subunit alpha complement(2182692..2184752) Shewanella sp. W3-18-1 4659559 YP_963290.1 CDS Sputw3181_1901 NC_008750.1 2184749 2188519 R TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: shm:Shewmr7_1852 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta complement(2184749..2188519) Shewanella sp. W3-18-1 4659565 YP_963291.1 CDS Sputw3181_1902 NC_008750.1 2188522 2192202 R TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: she:Shewmr4_1775 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma complement(2188522..2192202) Shewanella sp. W3-18-1 4659566 YP_963292.1 CDS Sputw3181_1903 NC_008750.1 2192354 2194483 R PFAM: transglutaminase domain protein; KEGG: son:SO2150 transglutaminase family protein; transglutaminase domain-containing protein complement(2192354..2194483) Shewanella sp. W3-18-1 4659553 YP_963293.1 CDS Sputw3181_1904 NC_008750.1 2194480 2195544 R PFAM: protein of unknown function DUF58; KEGG: shm:Shewmr7_1855 protein of unknown function DUF58; hypothetical protein complement(2194480..2195544) Shewanella sp. W3-18-1 4659562 YP_963294.1 CDS Sputw3181_1905 NC_008750.1 2195616 2196527 R PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: son:SO2153 MoxR protein; ATPase complement(2195616..2196527) Shewanella sp. W3-18-1 4659948 YP_963295.1 CDS Sputw3181_1906 NC_008750.1 2196674 2197378 R PFAM: EAL domain protein; KEGG: she:Shewmr4_2112 diguanylate phosphodiesterase; diguanylate phosphodiesterase complement(2196674..2197378) Shewanella sp. W3-18-1 4659955 YP_963296.1 CDS Sputw3181_1907 NC_008750.1 2197594 2199519 R PFAM: Lytic transglycosylase, catalytic; KEGG: shm:Shewmr7_1863 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic complement(2197594..2199519) Shewanella sp. W3-18-1 4660000 YP_963297.1 CDS Sputw3181_1908 NC_008750.1 2199597 2201153 R PFAM: protein of unknown function DUF195; KEGG: son:SO2041 hypothetical protein; hypothetical protein complement(2199597..2201153) Shewanella sp. W3-18-1 4660019 YP_963298.1 CDS Sputw3181_1909 NC_008750.1 2201396 2202430 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 2201396..2202430 Shewanella sp. W3-18-1 4660033 YP_963299.1 CDS Sputw3181_1910 NC_008750.1 2202453 2203076 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 2202453..2203076 Shewanella sp. W3-18-1 4660037 YP_963300.1 CDS Sputw3181_1911 NC_008750.1 2203150 2203647 R KEGG: son:SO2044 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase complement(2203150..2203647) Shewanella sp. W3-18-1 4660041 YP_963301.1 CDS Sputw3181_1912 NC_008750.1 2204182 2205375 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: shm:Shewmr7_1868 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 2204182..2205375 Shewanella sp. W3-18-1 4660044 YP_963302.1 CDS Sputw3181_1913 NC_008750.1 2205375 2205824 D PFAM: regulatory protein, MarR; KEGG: shm:Shewmr7_1869 transcriptional regulator, MarR family; MarR family transcriptional regulator 2205375..2205824 Shewanella sp. W3-18-1 4660051 YP_963303.1 CDS Sputw3181_1914 NC_008750.1 2206036 2208129 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO2047 prolyl oligopeptidase family protein; prolyl oligopeptidase 2206036..2208129 Shewanella sp. W3-18-1 4660104 YP_963304.1 CDS Sputw3181_1915 NC_008750.1 2208418 2210043 D PFAM: sulfatase; protein of unknown function DUF1705; KEGG: she:Shewmr4_2103 sulfatase; sulfatase 2208418..2210043 Shewanella sp. W3-18-1 4660124 YP_963305.1 CDS Sputw3181_1916 NC_008750.1 2210111 2211217 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_1872 diguanylate cyclase; diguanylate cyclase 2210111..2211217 Shewanella sp. W3-18-1 4659842 YP_963306.1 CDS Sputw3181_1917 NC_008750.1 2211286 2212248 R PFAM: UspA domain protein; KEGG: pat:Patl_2285 UspA; UspA domain-containing protein complement(2211286..2212248) Shewanella sp. W3-18-1 4660132 YP_963307.1 CDS Sputw3181_1918 NC_008750.1 2212279 2213904 R PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pat:Patl_2284 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(2212279..2213904) Shewanella sp. W3-18-1 4660135 YP_963308.1 CDS Sputw3181_1919 NC_008750.1 2214128 2216533 R TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; KEGG: son:SO2094 hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF complement(2214128..2216533) Shewanella sp. W3-18-1 4660137 YP_963309.1 CDS Sputw3181_1920 NC_008750.1 2216564 2218417 R KEGG: son:SO2095 hypothetical protein; hypothetical protein complement(2216564..2218417) Shewanella sp. W3-18-1 4660142 YP_963310.1 CDS Sputw3181_1921 NC_008750.1 2218398 2218961 R TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52, hydrogen uptake protein; KEGG: son:SO2096 hydrogenase expression/formation protein; hydrogenase expression/formation protein complement(2218398..2218961) Shewanella sp. W3-18-1 4660157 YP_963311.1 CDS Sputw3181_1922 NC_008750.1 2218969 2219643 R TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: shm:Shewmr7_2157 Ni/Fe-hydrogenase, b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit complement(2218969..2219643) Shewanella sp. W3-18-1 4660158 YP_963312.1 CDS Sputw3181_1923 NC_008750.1 2219663 2221366 R PFAM: nickel-dependent hydrogenase, large subunit; KEGG: son:SO2098 hydrogenase large chain; nickel-dependent hydrogenase, large subunit complement(2219663..2221366) Shewanella sp. W3-18-1 4660221 YP_963313.1 CDS Sputw3181_1924 NC_008750.1 2221370 2222506 R KEGG: son:SO2099 hydrogenase small chain; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; hydrogenase (NiFe) small subunit HydA complement(2221370..2222506) Shewanella sp. W3-18-1 4661775 YP_963314.1 CDS Sputw3181_1925 NC_008750.1 2222871 2223338 D PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_2154 redoxin domain protein; redoxin domain-containing protein 2222871..2223338 Shewanella sp. W3-18-1 4660283 YP_963315.1 CDS Sputw3181_1926 NC_008750.1 2223342 2223560 D KEGG: shm:Shewmr7_2153 lipoprotein, putative; putative lipoprotein 2223342..2223560 Shewanella sp. W3-18-1 4660235 YP_963316.1 CDS Sputw3181_1927 NC_008750.1 2223639 2224958 D KEGG: shm:Shewmr7_2152 hypothetical protein; hypothetical protein 2223639..2224958 Shewanella sp. W3-18-1 4660317 YP_963317.1 CDS Sputw3181_1928 NC_008750.1 2225197 2226024 D PFAM: ApbE family lipoprotein; KEGG: son:SO2103 ApbE family protein; ApbE family lipoprotein 2225197..2226024 Shewanella sp. W3-18-1 4660341 YP_963318.1 CDS Sputw3181_1929 NC_008750.1 2226035 2226694 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2104 DNA-binding response regulator YgiX, putative; two component transcriptional regulator 2226035..2226694 Shewanella sp. W3-18-1 4660961 YP_963319.1 CDS Sputw3181_1930 NC_008750.1 2226766 2228160 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2105 sensor protein YgiY, putative; integral membrane sensor signal transduction histidine kinase 2226766..2228160 Shewanella sp. W3-18-1 4661001 YP_963320.1 CDS mdoG NC_008750.1 2228609 2230243 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 2228609..2230243 Shewanella sp. W3-18-1 4660340 YP_963321.1 CDS Sputw3181_1932 NC_008750.1 2230267 2232450 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 2230267..2232450 Shewanella sp. W3-18-1 4660272 YP_963322.1 CDS ansA NC_008750.1 2232624 2233646 R converts asparagine to aspartate and ammonia; asparaginase complement(2232624..2233646) Shewanella sp. W3-18-1 4660287 YP_963323.1 CDS Sputw3181_1934 NC_008750.1 2233777 2235624 R TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: she:Shewmr4_1909 signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 67K type complement(2233777..2235624) Shewanella sp. W3-18-1 4660280 YP_963324.1 CDS Sputw3181_1935 NC_008750.1 2235790 2237808 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_1910 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 2235790..2237808 Shewanella sp. W3-18-1 4660254 YP_963325.1 CDS Sputw3181_1936 NC_008750.1 2237963 2238445 D PFAM: YCII-related protein; KEGG: hne:HNE_0837 YCII domain protein; hypothetical protein 2237963..2238445 Shewanella sp. W3-18-1 4660253 YP_963326.1 CDS Sputw3181_1937 NC_008750.1 2238477 2238932 R PFAM: ferredoxin; KEGG: shm:Shewmr7_2064 ferredoxin; ferredoxin complement(2238477..2238932) Shewanella sp. W3-18-1 4660252 YP_963327.1 CDS nrdB NC_008750.1 2238944 2240074 R B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta complement(2238944..2240074) Shewanella sp. W3-18-1 4660256 YP_963328.1 CDS Sputw3181_1939 NC_008750.1 2240139 2242427 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(2240139..2242427) Shewanella sp. W3-18-1 4660245 YP_963329.1 CDS Sputw3181_1940 NC_008750.1 2242821 2243489 R KEGG: shm:Shewmr7_2061 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase complement(2242821..2243489) Shewanella sp. W3-18-1 4660228 YP_963330.1 CDS Sputw3181_1941 NC_008750.1 2243491 2244201 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(2243491..2244201) Shewanella sp. W3-18-1 4660196 YP_963331.1 CDS Sputw3181_1942 NC_008750.1 2244586 2247339 D TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: she:Shewmr4_1919 DNA gyrase, A subunit; DNA gyrase subunit A 2244586..2247339 Shewanella sp. W3-18-1 4659812 YP_963332.1 CDS Sputw3181_1943 NC_008750.1 2247441 2248532 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2247441..2248532 Shewanella sp. W3-18-1 4660203 YP_963333.1 CDS Sputw3181_1944 NC_008750.1 2248872 2250545 D catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 2248872..2250545 Shewanella sp. W3-18-1 4660208 YP_963334.1 CDS araD NC_008750.1 2250547 2251242 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 2250547..2251242 Shewanella sp. W3-18-1 4660212 YP_963335.1 CDS Sputw3181_1946 NC_008750.1 2251273 2252790 D catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 2251273..2252790 Shewanella sp. W3-18-1 4660206 YP_963336.1 CDS Sputw3181_1947 NC_008750.1 2252898 2253503 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shm:Shewmr7_1994 HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase 2252898..2253503 Shewanella sp. W3-18-1 4660193 YP_963337.1 CDS Sputw3181_1948 NC_008750.1 2253707 2254423 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: shm:Shewmr7_1993 GntR domain protein; GntR family transcriptional regulator 2253707..2254423 Shewanella sp. W3-18-1 4659810 YP_963338.1 CDS Sputw3181_1949 NC_008750.1 2254498 2255433 R PFAM: glycoside hydrolase, family 43; KEGG: she:Shewmr4_1982 glycoside hydrolase, family 43; glycoside hydrolase complement(2254498..2255433) Shewanella sp. W3-18-1 4660504 YP_963339.1 CDS Sputw3181_1950 NC_008750.1 2255638 2257371 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 2255638..2257371 Shewanella sp. W3-18-1 4660508 YP_963340.1 CDS Sputw3181_1951 NC_008750.1 2257431 2258201 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: she:Shewmr4_1984 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2257431..2258201 Shewanella sp. W3-18-1 4660518 YP_963341.1 CDS Sputw3181_1952 NC_008750.1 2258304 2259359 D PFAM: Aldose 1-epimerase; KEGG: shm:Shewmr7_1989 aldose 1-epimerase; aldose 1-epimerase 2258304..2259359 Shewanella sp. W3-18-1 4660526 YP_963342.1 CDS Sputw3181_1953 NC_008750.1 2259483 2260421 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: shm:Shewmr7_1988 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 2259483..2260421 Shewanella sp. W3-18-1 4660533 YP_963343.1 CDS Sputw3181_1954 NC_008750.1 2260458 2261957 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_1987 ABC transporter related; ABC transporter-like protein 2260458..2261957 Shewanella sp. W3-18-1 4660550 YP_963344.1 CDS Sputw3181_1955 NC_008750.1 2261958 2263076 D PFAM: inner-membrane translocator; KEGG: shm:Shewmr7_1986 inner-membrane translocator; inner-membrane translocator 2261958..2263076 Shewanella sp. W3-18-1 4660555 YP_963345.1 CDS Sputw3181_1956 NC_008750.1 2263073 2264035 D membrane component of a putative sugar ABC transporter system; inner membrane ABC transporter permease YjfF 2263073..2264035 Shewanella sp. W3-18-1 4660560 YP_963346.1 CDS Sputw3181_1957 NC_008750.1 2264010 2265119 D PFAM: glycoside hydrolase, family 43; KEGG: shm:Shewmr7_1984 alpha-N-arabinofuranosidase; alpha-N-arabinofuranosidase 2264010..2265119 Shewanella sp. W3-18-1 4660565 YP_963347.1 CDS Sputw3181_1958 NC_008750.1 2265348 2266967 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: pfl:PFL_1735 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2265348..2266967 Shewanella sp. W3-18-1 4660568 YP_963348.1 CDS Sputw3181_1959 NC_008750.1 2267026 2267973 R PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0777 ribosomal protein L11 methyltransferase; alpha-N-arabinofuranosidase complement(2267026..2267973) Shewanella sp. W3-18-1 4660580 YP_963349.1 CDS Sputw3181_1960 NC_008750.1 2268001 2269416 R TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_1994 sugar (glycoside-pentoside-hexuronide) transporter; sugar (glycoside-Pentoside-hexuronide) transporter complement(2268001..2269416) Shewanella sp. W3-18-1 4660590 YP_963350.1 CDS Sputw3181_1961 NC_008750.1 2269630 2270703 D PFAM: glycoside hydrolase, family 43; KEGG: shm:Shewmr7_1980 arabinan endo-1,5-alpha-L-arabinosidase; arabinan endo-1,5-alpha-L-arabinosidase 2269630..2270703 Shewanella sp. W3-18-1 4660594 YP_963351.1 CDS Sputw3181_1962 NC_008750.1 2270706 2272592 D PFAM: Ricin B lectin; glycoside hydrolase, family 43; KEGG: she:Shewmr4_1996 glycoside hydrolase, family 43; alpha-N-arabinofuranosidase 2270706..2272592 Shewanella sp. W3-18-1 4660595 YP_963352.1 CDS Sputw3181_1963 NC_008750.1 2272816 2273580 R PFAM: protein of unknown function DUF81; KEGG: she:Shewmr4_1997 protein of unknown function DUF81; hypothetical protein complement(2272816..2273580) Shewanella sp. W3-18-1 4660684 YP_963353.1 CDS Sputw3181_1964 NC_008750.1 2273835 2276669 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_1977 TonB-dependent receptor; TonB-dependent receptor complement(2273835..2276669) Shewanella sp. W3-18-1 4660690 YP_963354.1 CDS Sputw3181_1965 NC_008750.1 2277243 2280581 D PFAM: glycoside hydrolase, family 43; KEGG: she:Shewmr4_1999 glycoside hydrolase, family 43; glycoside hydrolase 2277243..2280581 Shewanella sp. W3-18-1 4660698 YP_963355.1 CDS Sputw3181_1966 NC_008750.1 2280743 2281651 D PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: shm:Shewmr7_1974 SMP-30/gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein 2280743..2281651 Shewanella sp. W3-18-1 4660704 YP_963356.1 CDS Sputw3181_1967 NC_008750.1 2281699 2282889 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2281699..2282889) Shewanella sp. W3-18-1 4660741 YP_963357.1 CDS Sputw3181_1969 NC_008750.1 2283324 2284604 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2283324..2284604 Shewanella sp. W3-18-1 4660420 YP_963358.1 CDS cmk NC_008750.1 2284790 2285482 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2284790..2285482 Shewanella sp. W3-18-1 4660786 YP_963359.1 CDS rpsA NC_008750.1 2285586 2287253 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2285586..2287253 Shewanella sp. W3-18-1 4660413 YP_963360.1 CDS ihfB NC_008750.1 2287329 2287616 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2287329..2287616 Shewanella sp. W3-18-1 4660788 YP_963361.1 CDS Sputw3181_1973 NC_008750.1 2287739 2288014 D PFAM: protein of unknown function DUF1049; KEGG: shm:Shewmr7_2052 protein of unknown function DUF1049; hypothetical protein 2287739..2288014 Shewanella sp. W3-18-1 4660794 YP_963362.1 CDS Sputw3181_1974 NC_008750.1 2288016 2289176 D KEGG: son:SO2399 hypothetical protein; hypothetical protein 2288016..2289176 Shewanella sp. W3-18-1 4660797 YP_963363.1 CDS Sputw3181_1975 NC_008750.1 2289222 2289917 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2289222..2289917 Shewanella sp. W3-18-1 4660801 YP_963364.1 CDS Sputw3181_1976 NC_008750.1 2289969 2290790 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: shm:Shewmr7_2049 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2289969..2290790 Shewanella sp. W3-18-1 4660802 YP_963365.1 CDS Sputw3181_1977 NC_008750.1 2290861 2291403 D KEGG: she:Shewmr4_1930 hypothetical protein; hypothetical protein 2290861..2291403 Shewanella sp. W3-18-1 4660805 YP_963366.1 CDS Sputw3181_1978 NC_008750.1 2291618 2293375 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: she:Shewmr4_1931 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2291618..2293375 Shewanella sp. W3-18-1 4660834 YP_963367.1 CDS Sputw3181_1979 NC_008750.1 2293440 2294954 R KEGG: shm:Shewmr7_2044 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(2293440..2294954) Shewanella sp. W3-18-1 4660840 YP_963368.1 CDS Sputw3181_1980 NC_008750.1 2294980 2295156 R KEGG: shm:Shewmr7_2043 hypothetical protein; hypothetical protein complement(2294980..2295156) Shewanella sp. W3-18-1 4660850 YP_963369.1 CDS Sputw3181_1981 NC_008750.1 2295456 2295788 D KEGG: shm:Shewmr7_2042 hypothetical protein; hypothetical protein 2295456..2295788 Shewanella sp. W3-18-1 4660851 YP_963370.1 CDS pssA NC_008750.1 2295800 2297113 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2295800..2297113 Shewanella sp. W3-18-1 4660858 YP_963371.1 CDS emrD NC_008750.1 2297170 2298438 R multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D complement(2297170..2298438) Shewanella sp. W3-18-1 4660866 YP_963372.1 CDS ampC NC_008750.1 2298780 2299964 R PFAM: beta-lactamase; KEGG: shm:Shewmr7_2039 beta-lactamase; beta-lactamase complement(2298780..2299964) Shewanella sp. W3-18-1 4660872 YP_963373.1 CDS Sputw3181_1985 NC_008750.1 2300124 2300894 D PFAM: DTW domain containing protein; KEGG: son:SO2387 conserved hypothetical protein; DTW domain-containing protein 2300124..2300894 Shewanella sp. W3-18-1 4660877 YP_963374.1 CDS Sputw3181_1986 NC_008750.1 2300989 2303046 R PFAM: protein of unknown function DUF839; KEGG: shm:Shewmr7_2034 twin-arginine translocation pathway signal; hypothetical protein complement(2300989..2303046) Shewanella sp. W3-18-1 4660880 YP_963375.1 CDS Sputw3181_1987 NC_008750.1 2303301 2303624 D KEGG: she:Shewmr4_1945 hypothetical protein; hypothetical protein 2303301..2303624 Shewanella sp. W3-18-1 4660909 YP_963376.1 CDS Sputw3181_1988 NC_008750.1 2303836 2305815 D KEGG: shm:Shewmr7_2030 ATP-dependent DNA helicase, RecQ family; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 2303836..2305815 Shewanella sp. W3-18-1 4661053 YP_963377.1 CDS Sputw3181_1989 NC_008750.1 2305834 2306109 D KEGG: vfi:VF0709 hypothetical protein; hypothetical protein 2305834..2306109 Shewanella sp. W3-18-1 4661183 YP_963378.1 CDS Sputw3181_1990 NC_008750.1 2306190 2306741 R serine protease inhibitor, inhibits trypsin and other proteases; ecotin complement(2306190..2306741) Shewanella sp. W3-18-1 4661064 YP_963379.1 CDS Sputw3181_1991 NC_008750.1 2307733 2309112 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: shm:Shewmr7_2025 MATE efflux family protein; MATE efflux family protein complement(2307733..2309112) Shewanella sp. W3-18-1 4660452 YP_963380.1 CDS Sputw3181_1992 NC_008750.1 2309147 2309776 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2309147..2309776 Shewanella sp. W3-18-1 4661178 YP_963381.1 CDS Sputw3181_1993 NC_008750.1 2309773 2309973 R KEGG: shm:Shewmr7_2023 hypothetical protein; hypothetical protein complement(2309773..2309973) Shewanella sp. W3-18-1 4661155 YP_963382.1 CDS Sputw3181_1994 NC_008750.1 2310374 2312302 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2310374..2312302 Shewanella sp. W3-18-1 4661148 YP_963383.1 CDS infC NC_008750.1 2312417 2312848 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2312417..2312848 Shewanella sp. W3-18-1 4661143 YP_963384.1 CDS rpmI NC_008750.1 2312878 2313126 D PFAM: ribosomal protein L35; KEGG: sdn:Sden_1707 ribosomal protein L35; 50S ribosomal protein L35 2312878..2313126 Shewanella sp. W3-18-1 4661097 YP_963385.1 CDS rplT NC_008750.1 2313143 2313499 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2313143..2313499 Shewanella sp. W3-18-1 4661098 YP_963386.1 CDS Sputw3181_1998 NC_008750.1 2313749 2314702 R TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO2303 thioredoxin reductase; thioredoxin reductase complement(2313749..2314702) Shewanella sp. W3-18-1 4661100 YP_963387.1 CDS Sputw3181_1999 NC_008750.1 2314956 2316071 R TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: shm:Shewmr7_2015 alanine dehydrogenase; alanine dehydrogenase complement(2314956..2316071) Shewanella sp. W3-18-1 4661066 YP_963388.1 CDS Sputw3181_2000 NC_008750.1 2316251 2316757 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 2316251..2316757 Shewanella sp. W3-18-1 4658599 YP_963389.1 CDS Sputw3181_2001 NC_008750.1 2317087 2319777 D PFAM: cell divisionFtsK/SpoIIIE; KEGG: shm:Shewmr7_2013 cell divisionFtsK/SpoIIIE; cell division protein FtsK 2317087..2319777 Shewanella sp. W3-18-1 4661014 YP_963390.1 CDS Sputw3181_2002 NC_008750.1 2319854 2320480 D PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: shm:Shewmr7_2012 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 2319854..2320480 Shewanella sp. W3-18-1 4657759 YP_963391.1 CDS Sputw3181_2003 NC_008750.1 2320489 2321820 D PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: son:SO2308 ATPase, AAA family; recombination factor protein RarA 2320489..2321820 Shewanella sp. W3-18-1 4658601 YP_963392.1 CDS Sputw3181_2004 NC_008750.1 2321813 2322187 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2321813..2322187 Shewanella sp. W3-18-1 4661024 YP_963393.1 CDS Sputw3181_2005 NC_008750.1 2322206 2323492 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2322206..2323492 Shewanella sp. W3-18-1 4657758 YP_963394.1 CDS Sputw3181_2006 NC_008750.1 2323510 2323632 D KEGG: shm:Shewmr7_2008 hypothetical protein; hypothetical protein 2323510..2323632 Shewanella sp. W3-18-1 4661862 YP_963395.1 CDS Sputw3181_2007 NC_008750.1 2323725 2324063 R PFAM: DsrC family protein; KEGG: she:Shewmr4_1969 DsrC family protein; DsrC family protein complement(2323725..2324063) Shewanella sp. W3-18-1 4661857 YP_963396.1 CDS Sputw3181_2008 NC_008750.1 2324057 2324338 R PFAM: DsrH family protein; KEGG: son:SO2378 putative uncharacterized protein involved in oxidation of intracellular sulfur; DsrH family protein complement(2324057..2324338) Shewanella sp. W3-18-1 4661848 YP_963397.1 CDS Sputw3181_2009 NC_008750.1 2324338 2324694 R PFAM: DsrE family protein; KEGG: shm:Shewmr7_2005 DsrE family protein; DsrE family protein complement(2324338..2324694) Shewanella sp. W3-18-1 4661851 YP_963398.1 CDS Sputw3181_2010 NC_008750.1 2324709 2325098 R PFAM: DsrE family protein; KEGG: shm:Shewmr7_2004 DsrE family protein; DsrE family protein complement(2324709..2325098) Shewanella sp. W3-18-1 4661844 YP_963399.1 CDS Sputw3181_2011 NC_008750.1 2325159 2325818 R PFAM: protein of unknown function UPF0005; KEGG: son:SO2375 membrane protein, putative; hypothetical protein complement(2325159..2325818) Shewanella sp. W3-18-1 4661803 YP_963400.1 CDS Sputw3181_2012 NC_008750.1 2326057 2327046 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_1974 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator complement(2326057..2327046) Shewanella sp. W3-18-1 4661836 YP_963401.1 CDS Sputw3181_2013 NC_008750.1 2327075 2328349 D uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 2327075..2328349 Shewanella sp. W3-18-1 4661827 YP_963402.1 CDS Sputw3181_2014 NC_008750.1 2328746 2328994 D hypothetical protein 2328746..2328994 Shewanella sp. W3-18-1 4660515 YP_963403.1 CDS Sputw3181_2017 NC_008750.1 2331041 2331499 R KEGG: rpc:RPC_3570 sec-C metal-binding protein; sec-C metal-binding protein complement(2331041..2331499) Shewanella sp. W3-18-1 4661805 YP_963404.1 CDS Sputw3181_2018 NC_008750.1 2331681 2331935 R KEGG: ppr:PBPRB_2026 hypothetical protein; hypothetical protein complement(2331681..2331935) Shewanella sp. W3-18-1 4661813 YP_963405.1 CDS Sputw3181_2019 NC_008750.1 2332043 2332663 R KEGG: psb:Psyr_4515 hypothetical protein; hypothetical protein complement(2332043..2332663) Shewanella sp. W3-18-1 4657690 YP_963406.1 CDS Sputw3181_2020 NC_008750.1 2333044 2336019 R PFAM: transposase Tn3 family protein; KEGG: pol:Bpro_2512 transposase Tn3; transposase Tn3 family protein complement(2333044..2336019) Shewanella sp. W3-18-1 4661797 YP_963407.1 CDS Sputw3181_2021 NC_008750.1 2336162 2336842 R hypothetical protein complement(2336162..2336842) Shewanella sp. W3-18-1 4661793 YP_963408.1 CDS Sputw3181_2022 NC_008750.1 2336904 2337449 R hypothetical protein complement(2336904..2337449) Shewanella sp. W3-18-1 4661782 YP_963409.1 CDS Sputw3181_2023 NC_008750.1 2337459 2338709 R PFAM: phage integrase family protein; KEGG: xcv:XCV2438 cointegrate resolution protein S; phage integrase family protein complement(2337459..2338709) Shewanella sp. W3-18-1 4661757 YP_963410.1 CDS Sputw3181_2024 NC_008750.1 2338725 2339243 R KEGG: vch:VCA0487 hypothetical protein; hypothetical protein complement(2338725..2339243) Shewanella sp. W3-18-1 4661736 YP_963411.1 CDS Sputw3181_2025 NC_008750.1 2339244 2339630 R KEGG: vch:VCA0486 hypothetical protein; hypothetical protein complement(2339244..2339630) Shewanella sp. W3-18-1 4661714 YP_963412.1 CDS Sputw3181_2026 NC_008750.1 2339787 2340959 D KEGG: pol:Bpro_2488 cointegrate resolution protein T; cointegrate resolution protein T 2339787..2340959 Shewanella sp. W3-18-1 4661707 YP_963413.1 CDS Sputw3181_2027 NC_008750.1 2341366 2341851 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: mxa:MXAN_0073 thioesterase family domain protein; hypothetical protein 2341366..2341851 Shewanella sp. W3-18-1 4661699 YP_963414.1 CDS Sputw3181_2028 NC_008750.1 2341848 2342339 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: sfr:Sfri_1524 thioesterase superfamily protein; hypothetical protein 2341848..2342339 Shewanella sp. W3-18-1 4661690 YP_963415.1 CDS Sputw3181_2029 NC_008750.1 2342515 2343597 R PFAM: aldo/keto reductase; KEGG: rsp:RSP_3201 putative oxidoreductase; aldo/keto reductase complement(2342515..2343597) Shewanella sp. W3-18-1 4661693 YP_963416.1 CDS Sputw3181_2030 NC_008750.1 2343673 2344257 R PFAM: regulatory protein, TetR; KEGG: ret:RHE_CH02697 probable transcriptional regulator protein, TetR family; TetR family transcriptional regulator complement(2343673..2344257) Shewanella sp. W3-18-1 4661676 YP_963417.1 CDS Sputw3181_2031 NC_008750.1 2344302 2344970 R KEGG: jan:Jann_4157 anti-sigma factor, ChrR; anti-ECF sigma factor ChrR complement(2344302..2344970) Shewanella sp. W3-18-1 4661673 YP_963418.1 CDS Sputw3181_2032 NC_008750.1 2345018 2345638 R PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: pat:Patl_4128 glutathione S-transferase-like; glutathione S-transferase domain-containing protein complement(2345018..2345638) Shewanella sp. W3-18-1 4661671 YP_963419.1 CDS Sputw3181_2033 NC_008750.1 2345888 2346439 D KEGG: ilo:IL1253 hypothetical protein; hypothetical protein 2345888..2346439 Shewanella sp. W3-18-1 4661660 YP_963420.1 CDS Sputw3181_2034 NC_008750.1 2346735 2347091 D hypothetical protein 2346735..2347091 Shewanella sp. W3-18-1 4661648 YP_963421.1 CDS Sputw3181_2037 NC_008750.1 2348965 2349402 R KEGG: sfr:Sfri_3147 transposase, IS4 family protein; transposase, IS4 family protein complement(2348965..2349402) Shewanella sp. W3-18-1 4660597 YP_963422.1 CDS Sputw3181_2038 NC_008750.1 2349978 2350727 D PFAM: Integrase, catalytic region; KEGG: vpa:VP1787 putative transposase; integrase catalytic subunit 2349978..2350727 Shewanella sp. W3-18-1 4661633 YP_963423.1 CDS Sputw3181_2039 NC_008750.1 2350983 2351744 D PFAM: transposase, IS4 family protein; KEGG: lpn:lpg1315 transposase; transposase, IS4 family protein 2350983..2351744 Shewanella sp. W3-18-1 4661635 YP_963424.1 CDS Sputw3181_2040 NC_008750.1 2351876 2353504 D PFAM: chemotaxis sensory transducer; KEGG: ilo:IL1068 methyl-accepting chemotaxis protein with ligand-binding sensor domain and HAMP domain; methyl-accepting chemotaxis sensory transducer 2351876..2353504 Shewanella sp. W3-18-1 4661623 YP_963425.1 CDS Sputw3181_2041 NC_008750.1 2353609 2354196 R PFAM: regulatory protein, TetR; KEGG: ret:RHE_CH00601 probable transcriptional regulator protein, TetR family; TetR family transcriptional regulator complement(2353609..2354196) Shewanella sp. W3-18-1 4661634 YP_963426.1 CDS Sputw3181_2042 NC_008750.1 2354387 2354776 D PFAM: Endoribonuclease L-PSP; KEGG: atc:AGR_C_2721 hypothetical protein; endoribonuclease L-PSP 2354387..2354776 Shewanella sp. W3-18-1 4661630 YP_963427.1 CDS Sputw3181_2043 NC_008750.1 2354913 2355674 D PFAM: transposase, IS4 family protein; KEGG: lpn:lpg1315 transposase; transposase, IS4 family protein 2354913..2355674 Shewanella sp. W3-18-1 4661611 YP_963428.1 CDS Sputw3181_2045 NC_008750.1 2356043 2356531 R KEGG: son:SO2365 hypothetical protein; hypothetical protein complement(2356043..2356531) Shewanella sp. W3-18-1 4660605 YP_963429.1 CDS Sputw3181_2046 NC_008750.1 2356755 2358191 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2356755..2358191 Shewanella sp. W3-18-1 4661597 YP_963430.1 CDS Sputw3181_2047 NC_008750.1 2358204 2358830 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2358204..2358830 Shewanella sp. W3-18-1 4661585 YP_963431.1 CDS Sputw3181_2048 NC_008750.1 2358842 2359018 D PFAM: Cbb3-type cytochrome oxidase component; KEGG: shm:Shewmr7_1967 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit 2358842..2359018 Shewanella sp. W3-18-1 4661534 YP_963432.1 CDS Sputw3181_2049 NC_008750.1 2359018 2359986 D TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: shm:Shewmr7_1966 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 2359018..2359986 Shewanella sp. W3-18-1 4661518 YP_963433.1 CDS Sputw3181_2050 NC_008750.1 2360095 2360574 D KEGG: son:SO2360 hypothetical protein; hypothetical protein 2360095..2360574 Shewanella sp. W3-18-1 4661484 YP_963434.1 CDS Sputw3181_2051 NC_008750.1 2360597 2362996 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: she:Shewmr4_2011 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 2360597..2362996 Shewanella sp. W3-18-1 4661500 YP_963435.1 CDS Sputw3181_2052 NC_008750.1 2363036 2363284 D TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: shm:Shewmr7_1963 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein 2363036..2363284 Shewanella sp. W3-18-1 4661501 YP_963436.1 CDS Sputw3181_2053 NC_008750.1 2363281 2363973 D KEGG: son:SO2357 hypothetical protein; hypothetical protein 2363281..2363973 Shewanella sp. W3-18-1 4661435 YP_963437.1 CDS Sputw3181_2054 NC_008750.1 2364029 2364781 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2364029..2364781 Shewanella sp. W3-18-1 4661455 YP_963438.1 CDS Sputw3181_2055 NC_008750.1 2364957 2365889 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2364957..2365889 Shewanella sp. W3-18-1 4661456 YP_963439.1 CDS Sputw3181_2056 NC_008750.1 2365978 2366910 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2365978..2366910 Shewanella sp. W3-18-1 4661450 YP_963440.1 CDS Sputw3181_2057 NC_008750.1 2366997 2367626 R KEGG: son:SO2353 hypothetical protein; hypothetical protein complement(2366997..2367626) Shewanella sp. W3-18-1 4661439 YP_963441.1 CDS Sputw3181_2058 NC_008750.1 2367613 2368425 R KEGG: she:Shewmr4_2018 bax protein, putative; bax protein complement(2367613..2368425) Shewanella sp. W3-18-1 4661432 YP_963442.1 CDS Sputw3181_2059 NC_008750.1 2368756 2369679 D PFAM: protein of unknown function UPF0052 and CofD; KEGG: shm:Shewmr7_1956 hypothetical protein; hypothetical protein 2368756..2369679 Shewanella sp. W3-18-1 4661422 YP_963443.1 CDS Sputw3181_2060 NC_008750.1 2369739 2370932 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2369739..2370932) Shewanella sp. W3-18-1 4661392 YP_963444.1 CDS Sputw3181_2061 NC_008750.1 2371235 2371516 R PFAM: protein of unknown function DUF1315; KEGG: son:SO2422 hypothetical protein; hypothetical protein complement(2371235..2371516) Shewanella sp. W3-18-1 4661404 YP_963445.1 CDS Sputw3181_2062 NC_008750.1 2371513 2371830 R KEGG: shm:Shewmr7_2072 hypothetical protein; hypothetical protein complement(2371513..2371830) Shewanella sp. W3-18-1 4661201 YP_963446.1 CDS Sputw3181_2063 NC_008750.1 2371842 2372969 R PFAM: peptidase M14, carboxypeptidase A; KEGG: shm:Shewmr7_2073 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A complement(2371842..2372969) Shewanella sp. W3-18-1 4661375 YP_963447.1 CDS Sputw3181_2064 NC_008750.1 2373165 2373875 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2426 DNA-binding response regulator; two component transcriptional regulator complement(2373165..2373875) Shewanella sp. W3-18-1 4661377 YP_963448.1 CDS Sputw3181_2066 NC_008750.1 2374400 2375449 R PFAM: Integrase, catalytic region; KEGG: sdn:Sden_2168 integrase, catalytic region; integrase catalytic subunit complement(2374400..2375449) Shewanella sp. W3-18-1 4660616 YP_963449.1 CDS Sputw3181_2067 NC_008750.1 2375455 2375955 R PFAM: transposase IS3/IS911 family protein; KEGG: sdn:Sden_2169 hypothetical protein; transposase IS3/IS911 family protein complement(2375455..2375955) Shewanella sp. W3-18-1 4661379 YP_963450.1 CDS Sputw3181_2068 NC_008750.1 2375983 2378235 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_1903 TonB-dependent receptor; TonB-dependent receptor, plug complement(2375983..2378235) Shewanella sp. W3-18-1 4661355 YP_963451.1 CDS ruvB NC_008750.1 2379176 2380180 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2379176..2380180) Shewanella sp. W3-18-1 4659816 YP_963452.1 CDS ruvA NC_008750.1 2380195 2380812 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2380195..2380812) Shewanella sp. W3-18-1 4661342 YP_963453.1 CDS ruvC NC_008750.1 2380809 2381330 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(2380809..2381330) Shewanella sp. W3-18-1 4661321 YP_963454.1 CDS Sputw3181_2072 NC_008750.1 2381434 2382180 R PFAM: protein of unknown function DUF28; KEGG: shm:Shewmr7_2079 protein of unknown function DUF28; hypothetical protein complement(2381434..2382180) Shewanella sp. W3-18-1 4661062 YP_963455.1 CDS aspS NC_008750.1 2382420 2384198 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2382420..2384198) Shewanella sp. W3-18-1 4661311 YP_963456.1 CDS Sputw3181_2074 NC_008750.1 2384383 2387196 R KEGG: she:Shewmr4_1897 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3; diguanylate cyclase complement(2384383..2387196) Shewanella sp. W3-18-1 4661307 YP_963457.1 CDS Sputw3181_2075 NC_008750.1 2387346 2388077 D TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_1896 putative methyltransferase; putative methyltransferase 2387346..2388077 Shewanella sp. W3-18-1 4661295 YP_963458.1 CDS Sputw3181_2076 NC_008750.1 2388074 2389072 D TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_2083 putative methyltransferase; putative methyltransferase 2388074..2389072 Shewanella sp. W3-18-1 4661290 YP_963459.1 CDS Sputw3181_2077 NC_008750.1 2389065 2390816 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: shm:Shewmr7_2087 hypothetical protein; peptidase M3A and M3B, thimet/oligopeptidase F 2389065..2390816 Shewanella sp. W3-18-1 4661284 YP_963460.1 CDS Sputw3181_2078 NC_008750.1 2390923 2391834 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2438 transcriptional regulator, LysR family; LysR family transcriptional regulator 2390923..2391834 Shewanella sp. W3-18-1 4661275 YP_963461.1 CDS Sputw3181_2079 NC_008750.1 2391879 2393681 R KEGG: shm:Shewmr7_2090 SrpA-related protein; SrpA-like protein complement(2391879..2393681) Shewanella sp. W3-18-1 4661281 YP_963462.1 CDS Sputw3181_2080 NC_008750.1 2393687 2393950 R KEGG: son:SO2439.2 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein complement(2393687..2393950) Shewanella sp. W3-18-1 4661179 YP_963463.1 CDS thiH NC_008750.1 2394052 2395167 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(2394052..2395167) Shewanella sp. W3-18-1 4661270 YP_963464.1 CDS thiG NC_008750.1 2395164 2395928 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(2395164..2395928) Shewanella sp. W3-18-1 4661256 YP_963465.1 CDS Sputw3181_2083 NC_008750.1 2395930 2396145 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: son:SO2442 thiS protein, putative; thiamine biosynthesis protein ThiS complement(2395930..2396145) Shewanella sp. W3-18-1 4661248 YP_963466.1 CDS Sputw3181_2084 NC_008750.1 2396135 2397055 R PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: she:Shewmr4_1883 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein complement(2396135..2397055) Shewanella sp. W3-18-1 4661115 YP_963467.1 CDS Sputw3181_2085 NC_008750.1 2397030 2398904 R KEGG: shm:Shewmr7_2096 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; thiamine-phosphate pyrophosphorylase complement(2397030..2398904) Shewanella sp. W3-18-1 4661217 YP_963468.1 CDS Sputw3181_2086 NC_008750.1 2398937 2401057 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(2398937..2401057) Shewanella sp. W3-18-1 4661206 YP_963469.1 CDS Sputw3181_2087 NC_008750.1 2401524 2402585 R KEGG: son:SO2446 hypothetical protein; hypothetical protein complement(2401524..2402585) Shewanella sp. W3-18-1 4661209 YP_963470.1 CDS Sputw3181_2088 NC_008750.1 2402963 2403646 D TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: she:Shewmr4_1879 channel protein, hemolysin III family; hemolysin III family channel protein 2402963..2403646 Shewanella sp. W3-18-1 4661145 YP_963471.1 CDS Sputw3181_2089 NC_008750.1 2403697 2404191 R PFAM: DTW domain containing protein; KEGG: sfr:Sfri_1306 DTW domain containing protein; DTW domain-containing protein complement(2403697..2404191) Shewanella sp. W3-18-1 4660780 YP_963472.1 CDS Sputw3181_2090 NC_008750.1 2404247 2404780 R PFAM: NUDIX hydrolase; KEGG: son:SO2448 MutT/nudix family protein; NUDIX hydrolase complement(2404247..2404780) Shewanella sp. W3-18-1 4660700 YP_963473.1 CDS Sputw3181_2091 NC_008750.1 2404901 2407987 R KEGG: cvi:CV2953 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(2404901..2407987) Shewanella sp. W3-18-1 4661157 YP_963474.1 CDS Sputw3181_2092 NC_008750.1 2408242 2408979 R KEGG: son:SO2449 hypothetical protein; hypothetical protein complement(2408242..2408979) Shewanella sp. W3-18-1 4660660 YP_963475.1 CDS Sputw3181_2093 NC_008750.1 2409296 2410165 D PFAM: UspA domain protein; KEGG: sfr:Sfri_2734 hypothetical protein; UspA domain-containing protein 2409296..2410165 Shewanella sp. W3-18-1 4661472 YP_963476.1 CDS Sputw3181_2094 NC_008750.1 2410410 2411306 D PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: she:Shewmr4_1875 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein 2410410..2411306 Shewanella sp. W3-18-1 4660388 YP_963477.1 CDS Sputw3181_2095 NC_008750.1 2411344 2411793 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: shm:Shewmr7_2104 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase 2411344..2411793 Shewanella sp. W3-18-1 4660641 YP_963478.1 CDS Sputw3181_2096 NC_008750.1 2411862 2412869 R KEGG: shm:Shewmr7_2105 hypothetical protein; hypothetical protein complement(2411862..2412869) Shewanella sp. W3-18-1 4660899 YP_963479.1 CDS Sputw3181_2097 NC_008750.1 2413440 2413733 R PFAM: YCII-related protein; KEGG: son:SO2457 hypothetical protein; hypothetical protein complement(2413440..2413733) Shewanella sp. W3-18-1 4660387 YP_963480.1 CDS Sputw3181_2098 NC_008750.1 2413787 2414587 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: shm:Shewmr7_2110 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein complement(2413787..2414587) Shewanella sp. W3-18-1 4660381 YP_963481.1 CDS Sputw3181_2099 NC_008750.1 2414668 2416059 D PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: shm:Shewmr7_2111 sodium/sulphate symporter; sodium/sulfate symporter 2414668..2416059 Shewanella sp. W3-18-1 4660612 YP_963482.1 CDS Sputw3181_2100 NC_008750.1 2416178 2417338 R PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: cps:CPS_2133 hypothetical protein; cupin 4 family protein complement(2416178..2417338) Shewanella sp. W3-18-1 4660578 YP_963483.1 CDS Sputw3181_2101 NC_008750.1 2417426 2417776 R KEGG: son:SO2234 hypothetical protein; hypothetical protein complement(2417426..2417776) Shewanella sp. W3-18-1 4660573 YP_963484.1 CDS Sputw3181_2102 NC_008750.1 2417773 2418153 R KEGG: rba:RB11509 hypothetical protein; hypothetical protein complement(2417773..2418153) Shewanella sp. W3-18-1 4660908 YP_963485.1 CDS Sputw3181_2103 NC_008750.1 2418298 2418885 R TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: shm:Shewmr7_2133 periplasmic nitrate (or nitrite) reductase C-type cytochrome, NapC/NirT family; NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome complement(2418298..2418885) Shewanella sp. W3-18-1 4660907 YP_963486.1 CDS Sputw3181_2104 NC_008750.1 2418894 2419379 R PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: she:Shewmr4_1843 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit complement(2418894..2419379) Shewanella sp. W3-18-1 4660329 YP_963487.1 CDS Sputw3181_2105 NC_008750.1 2419390 2421879 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(2419390..2421879) Shewanella sp. W3-18-1 4660326 YP_963488.1 CDS Sputw3181_2106 NC_008750.1 2421882 2422139 R PFAM: NapD family protein; KEGG: shm:Shewmr7_2136 NapD family protein; NapD family protein complement(2421882..2422139) Shewanella sp. W3-18-1 4659813 YP_963489.1 CDS Sputw3181_2107 NC_008750.1 2422183 2422341 R PFAM: periplasmic nitrate reductase NapE; KEGG: shm:Shewmr7_2137 periplasmic nitrate reductase NapE; periplasmic nitrate reductase NapE complement(2422183..2422341) Shewanella sp. W3-18-1 4660231 YP_963490.1 CDS Sputw3181_2108 NC_008750.1 2422865 2426746 R KEGG: shm:Shewmr7_2138 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like; ATP-dependent helicase HrpA complement(2422865..2426746) Shewanella sp. W3-18-1 4660306 YP_963491.1 CDS Sputw3181_2109 NC_008750.1 2426841 2427257 R PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_2139 putative signal transduction protein with CBS domains; signal transduction protein complement(2426841..2427257) Shewanella sp. W3-18-1 4660924 YP_963492.1 CDS Sputw3181_2110 NC_008750.1 2427380 2428411 R PFAM: peptidase T2, asparaginase 2; KEGG: shm:Shewmr7_2140 peptidase T2, asparaginase 2; peptidase T2, asparaginase 2 complement(2427380..2428411) Shewanella sp. W3-18-1 4660209 YP_963493.1 CDS Sputw3181_2111 NC_008750.1 2428520 2430385 D PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO2114 hypothetical protein; surface antigen (D15) 2428520..2430385 Shewanella sp. W3-18-1 4660291 YP_963494.1 CDS Sputw3181_2112 NC_008750.1 2430382 2434299 D PFAM: protein of unknown function DUF490; KEGG: she:Shewmr4_1835 protein of unknown function DUF490; hypothetical protein 2430382..2434299 Shewanella sp. W3-18-1 4660440 YP_963495.1 CDS Sputw3181_2113 NC_008750.1 2434439 2434726 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(2434439..2434726) Shewanella sp. W3-18-1 4660430 YP_963496.1 CDS Sputw3181_2114 NC_008750.1 2435016 2435462 D KEGG: son:SO2111 hypothetical protein; hypothetical protein 2435016..2435462 Shewanella sp. W3-18-1 4661163 YP_963497.1 CDS Sputw3181_2115 NC_008750.1 2435413 2435961 R PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: son:SO2110 hypothetical protein; hypothetical protein complement(2435413..2435961) Shewanella sp. W3-18-1 4659836 YP_963498.1 CDS Sputw3181_2116 NC_008750.1 2436085 2437539 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO2109 hypothetical protein; peptidoglycan binding domain-containing protein complement(2436085..2437539) Shewanella sp. W3-18-1 4661004 YP_963499.1 CDS Sputw3181_2117 NC_008750.1 2438651 2440084 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase complement(2438651..2440084) Shewanella sp. W3-18-1 4660844 YP_963500.1 CDS Sputw3181_2118 NC_008750.1 2440330 2441175 D KEGG: she:Shewmr4_2022 hypothetical protein; hypothetical protein 2440330..2441175 Shewanella sp. W3-18-1 4660027 YP_963501.1 CDS Sputw3181_2119 NC_008750.1 2441382 2442392 D KEGG: son:SO2345 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 2441382..2442392 Shewanella sp. W3-18-1 4661181 YP_963502.1 CDS Sputw3181_2120 NC_008750.1 2442551 2443633 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(2442551..2443633) Shewanella sp. W3-18-1 4660999 YP_963503.1 CDS Sputw3181_2121 NC_008750.1 2443766 2445376 R PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: shm:Shewmr7_1949 catalytic domain of components of various dehydrogenase complexes; dihydrolipoamide acetyltransferase complement(2443766..2445376) Shewanella sp. W3-18-1 4659777 YP_963504.1 CDS Sputw3181_2122 NC_008750.1 2445386 2446363 R PFAM: Transketolase, central region; Transketolase domain protein; KEGG: shm:Shewmr7_1948 transketolase, central region; transketolase, central region complement(2445386..2446363) Shewanella sp. W3-18-1 4659916 YP_963505.1 CDS Sputw3181_2123 NC_008750.1 2446367 2447545 R PFAM: dehydrogenase, E1 component; KEGG: shm:Shewmr7_1947 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); 3-methyl-2-oxobutanoate dehydrogenase complement(2446367..2447545) Shewanella sp. W3-18-1 4661542 YP_963506.1 CDS Sputw3181_2124 NC_008750.1 2447708 2448742 R catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase complement(2447708..2448742) Shewanella sp. W3-18-1 4659622 YP_963507.1 CDS Sputw3181_2125 NC_008750.1 2449039 2449518 D KEGG: shm:Shewmr7_1945 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 2449039..2449518 Shewanella sp. W3-18-1 4659692 YP_963508.1 CDS Sputw3181_2126 NC_008750.1 2449602 2451254 R catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase complement(2449602..2451254) Shewanella sp. W3-18-1 4659850 YP_963509.1 CDS Sputw3181_2127 NC_008750.1 2451301 2451858 R negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA complement(2451301..2451858) Shewanella sp. W3-18-1 4660984 YP_963510.1 CDS Sputw3181_2128 NC_008750.1 2452140 2452916 D PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: shm:Shewmr7_1942 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 2452140..2452916 Shewanella sp. W3-18-1 4660988 YP_963511.1 CDS Sputw3181_2129 NC_008750.1 2453018 2453239 D KEGG: shm:Shewmr7_1941 hypothetical protein; hypothetical protein 2453018..2453239 Shewanella sp. W3-18-1 4660966 YP_963512.1 CDS Sputw3181_2130 NC_008750.1 2453251 2453523 D KEGG: shm:Shewmr7_1940 CopG domain protein DNA-binding domain protein; LexA regulated protein 2453251..2453523 Shewanella sp. W3-18-1 4659422 YP_963513.1 CDS Sputw3181_2131 NC_008750.1 2453580 2454107 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 2453580..2454107 Shewanella sp. W3-18-1 4660929 YP_963514.1 CDS Sputw3181_2132 NC_008750.1 2454217 2455395 D KEGG: shm:Shewmr7_1938 hypothetical protein; hypothetical protein 2454217..2455395 Shewanella sp. W3-18-1 4660928 YP_963515.1 CDS Sputw3181_2133 NC_008750.1 2455440 2456000 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2455440..2456000 Shewanella sp. W3-18-1 4659373 YP_963516.1 CDS Sputw3181_2134 NC_008750.1 2456172 2456993 R KEGG: she:Shewmr4_1801 hypothetical protein; hypothetical protein complement(2456172..2456993) Shewanella sp. W3-18-1 4660997 YP_963517.1 CDS Sputw3181_2135 NC_008750.1 2457208 2458590 R PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_1936 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(2457208..2458590) Shewanella sp. W3-18-1 4659122 YP_963518.1 CDS Sputw3181_2136 NC_008750.1 2459376 2460590 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2459376..2460590 Shewanella sp. W3-18-1 4661873 YP_963519.1 CDS Sputw3181_2137 NC_008750.1 2460873 2461460 D KEGG: shm:Shewmr7_1934 metal dependent phosphohydrolase; hypothetical protein 2460873..2461460 Shewanella sp. W3-18-1 4660970 YP_963520.1 CDS Sputw3181_2138 NC_008750.1 2461486 2462835 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2461486..2462835 Shewanella sp. W3-18-1 4661567 YP_963521.1 CDS Sputw3181_2139 NC_008750.1 2463025 2463708 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(2463025..2463708) Shewanella sp. W3-18-1 4661188 YP_963522.1 CDS Sputw3181_2140 NC_008750.1 2463686 2465527 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(2463686..2465527) Shewanella sp. W3-18-1 4659279 YP_963523.1 CDS Sputw3181_2141 NC_008750.1 2465537 2466235 R TIGRFAM: 6-phosphogluconolactonase; KEGG: son:SO2488 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(2465537..2466235) Shewanella sp. W3-18-1 4661094 YP_963524.1 CDS Sputw3181_2142 NC_008750.1 2466245 2467717 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(2466245..2467717) Shewanella sp. W3-18-1 4661000 YP_963525.1 CDS Sputw3181_2143 NC_008750.1 2468028 2468882 D Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2468028..2468882 Shewanella sp. W3-18-1 4659250 YP_963526.1 CDS Sputw3181_2144 NC_008750.1 2469067 2470506 D PFAM: pyruvate kinase; KEGG: shm:Shewmr7_1927 pyruvate kinase; pyruvate kinase 2469067..2470506 Shewanella sp. W3-18-1 4659068 YP_963527.1 CDS Sputw3181_2145 NC_008750.1 2470674 2472047 D PFAM: transposase Tn5, dimerisation domain protein; KEGG: ppr:PBPRB0910 hypothetical transposase; transposase Tn5 dimerisation subunit 2470674..2472047 Shewanella sp. W3-18-1 4661475 YP_963528.1 CDS Sputw3181_2146 NC_008750.1 2472167 2474446 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2472167..2474446) Shewanella sp. W3-18-1 4659242 YP_963529.1 CDS Sputw3181_2147 NC_008750.1 2474459 2475100 R PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_1925 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2474459..2475100) Shewanella sp. W3-18-1 4659223 YP_963530.1 CDS Sputw3181_2148 NC_008750.1 2475377 2475967 R PFAM: Smr protein/MutS2; KEGG: she:Shewmr4_2052 Smr protein/MutS2; Smr protein/MutS2 complement(2475377..2475967) Shewanella sp. W3-18-1 4659195 YP_963531.1 CDS Sputw3181_2149 NC_008750.1 2476102 2476686 D KEGG: she:Shewmr4_2053 hypothetical protein; hypothetical protein 2476102..2476686 Shewanella sp. W3-18-1 4658868 YP_963532.1 CDS Sputw3181_2150 NC_008750.1 2476715 2477206 D PFAM: SEC-C motif domain protein; KEGG: shm:Shewmr7_1921 sec-C motif domain protein; SecC motif-containing protein 2476715..2477206 Shewanella sp. W3-18-1 4658864 YP_963533.1 CDS Sputw3181_2151 NC_008750.1 2477297 2479480 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold domain protein; KEGG: she:Shewmr4_2055 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(2477297..2479480) Shewanella sp. W3-18-1 4658614 YP_963534.1 CDS Sputw3181_2152 NC_008750.1 2479671 2480006 R KEGG: son:SO2499 hypothetical protein; hypothetical protein complement(2479671..2480006) Shewanella sp. W3-18-1 4658820 YP_963535.1 CDS Sputw3181_2153 NC_008750.1 2480151 2480639 R KEGG: she:Shewmr4_2057 hypothetical protein; hypothetical protein complement(2480151..2480639) Shewanella sp. W3-18-1 4658809 YP_963536.1 CDS Sputw3181_2154 NC_008750.1 2481376 2482044 R KEGG: son:SO2501 radical activating enzyme; radical activating enzyme complement(2481376..2482044) Shewanella sp. W3-18-1 4661072 YP_963537.1 CDS Sputw3181_2155 NC_008750.1 2482216 2482953 D YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC 2482216..2482953 Shewanella sp. W3-18-1 4660424 YP_963538.1 CDS Sputw3181_2156 NC_008750.1 2482980 2483546 D PFAM: Rhomboid family protein; KEGG: she:Shewmr4_2060 rhomboid family protein; rhomboid family protein 2482980..2483546 Shewanella sp. W3-18-1 4658578 YP_963539.1 CDS Sputw3181_2157 NC_008750.1 2483627 2485633 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2483627..2485633) Shewanella sp. W3-18-1 4658571 YP_963540.1 CDS Sputw3181_2158 NC_008750.1 2487294 2489198 D PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: shm:Shewmr7_1912 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 2487294..2489198 Shewanella sp. W3-18-1 4661380 YP_963541.1 CDS Sputw3181_2159 NC_008750.1 2489324 2489902 D TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: shm:Shewmr7_1911 electron transport complex, RnfABCDGE type, A subunit; Na(+)-translocating NADH-quinone reductase subunit E 2489324..2489902 Shewanella sp. W3-18-1 4661113 YP_963542.1 CDS Sputw3181_2160 NC_008750.1 2489904 2490503 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2489904..2490503 Shewanella sp. W3-18-1 4661142 YP_963543.1 CDS Sputw3181_2161 NC_008750.1 2490497 2492878 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2490497..2492878 Shewanella sp. W3-18-1 4658431 YP_963544.1 CDS rnfD NC_008750.1 2492944 2493993 D RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 2492944..2493993 Shewanella sp. W3-18-1 4658393 YP_963545.1 CDS Sputw3181_2163 NC_008750.1 2494060 2494686 D part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 2494060..2494686 Shewanella sp. W3-18-1 4660925 YP_963546.1 CDS Sputw3181_2164 NC_008750.1 2494679 2495377 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 2494679..2495377 Shewanella sp. W3-18-1 4658664 YP_963547.1 CDS Sputw3181_2165 NC_008750.1 2495393 2496034 D KEGG: she:Shewmr4_2070 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 2495393..2496034 Shewanella sp. W3-18-1 4661717 YP_963548.1 CDS Sputw3181_2166 NC_008750.1 2496085 2496552 R KEGG: she:Shewmr4_2075 hypothetical protein; hypothetical protein complement(2496085..2496552) Shewanella sp. W3-18-1 4658641 YP_963549.1 CDS Sputw3181_2167 NC_008750.1 2496552 2497721 R PFAM: Propeptide, PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: shm:Shewmr7_1899 PepSY-associated TM helix domain protein; peptidase complement(2496552..2497721) Shewanella sp. W3-18-1 4658636 YP_963550.1 CDS Sputw3181_2168 NC_008750.1 2497850 2499940 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ilo:IL2511 outer membrane receptor for ferric siderophore; TonB-dependent siderophore receptor 2497850..2499940 Shewanella sp. W3-18-1 4658532 YP_963551.1 CDS Sputw3181_2169 NC_008750.1 2500142 2500930 R KEGG: shm:Shewmr7_1896 hypothetical protein; hypothetical protein complement(2500142..2500930) Shewanella sp. W3-18-1 4658627 YP_963552.1 CDS Sputw3181_2170 NC_008750.1 2501142 2502752 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2525 ABC transporter, ATP-binding protein; ABC transporter-like protein 2501142..2502752 Shewanella sp. W3-18-1 4658203 YP_963553.1 CDS Sputw3181_2171 NC_008750.1 2502878 2503465 R KEGG: pfl:PFL_3338 hypothetical protein; hypothetical protein complement(2502878..2503465) Shewanella sp. W3-18-1 4660914 YP_963554.1 CDS Sputw3181_2172 NC_008750.1 2503668 2506367 D PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: she:Shewmr4_2098 CoA-binding domain protein; CoA-binding domain-containing protein 2503668..2506367 Shewanella sp. W3-18-1 4658169 YP_963555.1 CDS Sputw3181_2173 NC_008750.1 2506642 2507424 D TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: son:SO2093 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 2506642..2507424 Shewanella sp. W3-18-1 4661025 YP_963556.1 CDS Sputw3181_2174 NC_008750.1 2507424 2507669 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: son:SO2092 hydrogenase assembly chaperone hypC/hupF; hydrogenase assembly chaperone HypC/HupF 2507424..2507669 Shewanella sp. W3-18-1 4660339 YP_963557.1 CDS Sputw3181_2175 NC_008750.1 2507731 2508870 D TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: son:SO2091 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD 2507731..2508870 Shewanella sp. W3-18-1 4658128 YP_963558.1 CDS Sputw3181_2176 NC_008750.1 2508863 2509879 D TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: shm:Shewmr7_2164 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2508863..2509879 Shewanella sp. W3-18-1 4660965 YP_963559.1 CDS Sputw3181_2177 NC_008750.1 2509879 2510226 D TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; KEGG: shm:Shewmr7_2165 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA 2509879..2510226 Shewanella sp. W3-18-1 4657705 YP_963560.1 CDS Sputw3181_2178 NC_008750.1 2510363 2511304 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(2510363..2511304) Shewanella sp. W3-18-1 4658009 YP_963561.1 CDS ihfA NC_008750.1 2511401 2511697 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(2511401..2511697) Shewanella sp. W3-18-1 4660903 YP_963562.1 CDS pheT NC_008750.1 2511701 2514088 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(2511701..2514088) Shewanella sp. W3-18-1 4657984 YP_963563.1 CDS pheS NC_008750.1 2514104 2515087 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(2514104..2515087) Shewanella sp. W3-18-1 4657980 YP_963564.1 CDS Sputw3181_2182 NC_008750.1 2515611 2517119 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_2170 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2515611..2517119 Shewanella sp. W3-18-1 4657694 YP_963565.1 CDS Sputw3181_2183 NC_008750.1 2517309 2519294 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_1806 TonB-dependent receptor; TonB-dependent receptor 2517309..2519294 Shewanella sp. W3-18-1 4657970 YP_963566.1 CDS Sputw3181_2184 NC_008750.1 2519800 2520171 D KEGG: shm:Shewmr7_2388 cytochrome c3; hypothetical protein 2519800..2520171 Shewanella sp. W3-18-1 4657959 YP_963567.1 CDS Sputw3181_2185 NC_008750.1 2520345 2522339 R SMART: helicase c2; KEGG: shm:Shewmr7_2172 helicase C2; helicase c2 complement(2520345..2522339) Shewanella sp. W3-18-1 4657945 YP_963568.1 CDS Sputw3181_2186 NC_008750.1 2524253 2524927 R TIGRFAM: CRISPR-associated protein, Csy4 family; KEGG: zmo:ZMO0685 hypothetical protein; CRISPR-associated Csy4 family protein complement(2524253..2524927) Shewanella sp. W3-18-1 4657924 YP_963569.1 CDS Sputw3181_2187 NC_008750.1 2524930 2525958 R TIGRFAM: CRISPR-associated protein, Csy3 family; KEGG: lpf:lpl2841 hypothetical protein; CRISPR-associated Csy3 family protein complement(2524930..2525958) Shewanella sp. W3-18-1 4657918 YP_963570.1 CDS Sputw3181_2188 NC_008750.1 2525984 2526934 R TIGRFAM: CRISPR-associated protein, Csy2 family; KEGG: lpf:plpl0049 hypothetical protein; CRISPR-associated Csy2 family protein complement(2525984..2526934) Shewanella sp. W3-18-1 4657906 YP_963571.1 CDS Sputw3181_2189 NC_008750.1 2526931 2528229 R TIGRFAM: CRISPR-associated protein, Csy1 family; KEGG: lpf:lpl2839 hypothetical protein; CRISPR-associated Csy1 family protein complement(2526931..2528229) Shewanella sp. W3-18-1 4660943 YP_963572.1 CDS Sputw3181_2190 NC_008750.1 2528610 2532023 R TIGRFAM: CRISPR-associated helicase Cas3 family; KEGG: lpf:lpl2838 hypothetical protein; CRISPR-associated helicase Cas3 family protein complement(2528610..2532023) Shewanella sp. W3-18-1 4657670 YP_963573.1 CDS Sputw3181_2191 NC_008750.1 2532036 2533013 R TIGRFAM: CRISPR-associated protein Cas1; KEGG: ppr:PBPRB1995 hypothetical protein; CRISPR-associated Cas1 family protein complement(2532036..2533013) Shewanella sp. W3-18-1 4657826 YP_963574.1 CDS Sputw3181_2193 NC_008750.1 2534487 2535680 D PFAM: beta-lactamase; KEGG: pae:PA2315 hypothetical protein; beta-lactamase 2534487..2535680 Shewanella sp. W3-18-1 4660773 YP_963575.1 CDS Sputw3181_2194 NC_008750.1 2535677 2536894 D PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_3692 general substrate transporter; major facilitator superfamily transporter 2535677..2536894 Shewanella sp. W3-18-1 4657776 YP_963576.1 CDS Sputw3181_2195 NC_008750.1 2537000 2538037 D PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_A4906 major facilitator superfamily (MFS_1) transporter; major facilitator superfamily transporter 2537000..2538037 Shewanella sp. W3-18-1 4661705 YP_963577.1 CDS Sputw3181_2196 NC_008750.1 2538570 2539691 R KEGG: psb:Psyr_4511 hypothetical protein; hypothetical protein complement(2538570..2539691) Shewanella sp. W3-18-1 4661370 YP_963578.1 CDS Sputw3181_2197 NC_008750.1 2539702 2540907 R PFAM: protein of unknown function DUF955; KEGG: ilo:IL2196 predicted metal-dependent peptidase; hypothetical protein complement(2539702..2540907) Shewanella sp. W3-18-1 4661726 YP_963579.1 CDS Sputw3181_2198 NC_008750.1 2541330 2541773 R hypothetical protein complement(2541330..2541773) Shewanella sp. W3-18-1 4661763 YP_963580.1 CDS Sputw3181_2199 NC_008750.1 2541821 2542360 R hypothetical protein complement(2541821..2542360) Shewanella sp. W3-18-1 4661445 YP_963581.1 CDS Sputw3181_2200 NC_008750.1 2542363 2542917 R PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: gsu:GSU1711 integrative genetic element Gsu5, resolvase; resolvase domain-containing protein complement(2542363..2542917) Shewanella sp. W3-18-1 4661778 YP_963582.1 CDS Sputw3181_2201 NC_008750.1 2543301 2543738 R KEGG: vch:VC0508 hypothetical protein; hypothetical protein complement(2543301..2543738) Shewanella sp. W3-18-1 4661754 YP_963583.1 CDS Sputw3181_2202 NC_008750.1 2543735 2544217 R PFAM: DNA repair protein RadC; KEGG: vvy:VV2251 DNA repair protein; DNA repair protein RadC complement(2543735..2544217) Shewanella sp. W3-18-1 4661373 YP_963584.1 CDS Sputw3181_2203 NC_008750.1 2544374 2544784 D hypothetical protein 2544374..2544784 Shewanella sp. W3-18-1 4661151 YP_963585.1 CDS Sputw3181_2206 NC_008750.1 2546144 2546566 D hypothetical protein 2546144..2546566 Shewanella sp. W3-18-1 4661073 YP_963586.1 CDS Sputw3181_2207 NC_008750.1 2546714 2549434 D TIGRFAM: phage/plasmid primase, P4 family; PFAM: Poxvirus D5 protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; KEGG: lin:lin2587 similar to bacteriophage protein; P4 family phage/plasmid primase 2546714..2549434 Shewanella sp. W3-18-1 4661652 YP_963587.1 CDS Sputw3181_2208 NC_008750.1 2549837 2550973 D SMART: protein phosphatase 2C domain protein; KEGG: sty:STY4824 hypothetical protein; protein phosphatase 2C domain-containing protein 2549837..2550973 Shewanella sp. W3-18-1 4657942 YP_963588.1 CDS Sputw3181_2209 NC_008750.1 2550957 2552009 D PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: stt:t4520 protein kinase; protein kinase 2550957..2552009 Shewanella sp. W3-18-1 4661036 YP_963589.1 CDS Sputw3181_2210 NC_008750.1 2552006 2553073 D PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: stt:t4519 protein kinase; protein kinase 2552006..2553073 Shewanella sp. W3-18-1 4661246 YP_963590.1 CDS Sputw3181_2211 NC_008750.1 2553240 2555063 R PFAM: phage integrase family protein; KEGG: vpa:VP0643 hypothetical protein; phage integrase family protein complement(2553240..2555063) Shewanella sp. W3-18-1 4659432 YP_963591.1 CDS Sputw3181_2212 NC_008750.1 2555495 2557489 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: shm:Shewmr7_1760 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2555495..2557489) Shewanella sp. W3-18-1 4660768 YP_963592.1 CDS Sputw3181_2213 NC_008750.1 2557737 2558369 R PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO2137 multiple antibiotic resistance protein; hypothetical protein complement(2557737..2558369) Shewanella sp. W3-18-1 4659865 YP_963593.1 CDS Sputw3181_2214 NC_008750.1 2558687 2561290 D PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: she:Shewmr4_1683 iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2558687..2561290 Shewanella sp. W3-18-1 4659792 YP_963594.1 CDS Sputw3181_2215 NC_008750.1 2561455 2562390 R KEGG: she:Shewmr4_2121 hypothetical protein; hypothetical protein complement(2561455..2562390) Shewanella sp. W3-18-1 4660093 YP_963595.1 CDS Sputw3181_2216 NC_008750.1 2562461 2562919 R PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_2122 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2562461..2562919) Shewanella sp. W3-18-1 4659808 YP_963596.1 CDS Sputw3181_2217 NC_008750.1 2563141 2565204 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: shm:Shewmr7_2199 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(2563141..2565204) Shewanella sp. W3-18-1 4660304 YP_963597.1 CDS Sputw3181_2218 NC_008750.1 2565467 2567011 R TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: son:SO2222 fumarate hydratase, class I, anaerobic, putative; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha complement(2565467..2567011) Shewanella sp. W3-18-1 4660514 YP_963598.1 CDS Sputw3181_2219 NC_008750.1 2567131 2568531 D TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: son:SO2221 para-aminobenzoate synthase, component I; para-aminobenzoate synthase subunit I 2567131..2568531 Shewanella sp. W3-18-1 4660592 YP_963599.1 CDS Sputw3181_2220 NC_008750.1 2568571 2569155 D PFAM: NUDIX hydrolase; KEGG: she:Shewmr4_2126 NUDIX hydrolase; NUDIX hydrolase 2568571..2569155 Shewanella sp. W3-18-1 4660680 YP_963600.1 CDS Sputw3181_2221 NC_008750.1 2569176 2569511 R KEGG: shm:Shewmr7_2203 hypothetical protein; hypothetical protein complement(2569176..2569511) Shewanella sp. W3-18-1 4660821 YP_963601.1 CDS asnC NC_008750.1 2569662 2571062 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2569662..2571062 Shewanella sp. W3-18-1 4660919 YP_963602.1 CDS Sputw3181_2223 NC_008750.1 2571200 2571985 R SMART: extracellular solute-binding protein, family 3; KEGG: dvu:DVU0852 extracellular solute-binding protein, putative; extracellular solute-binding protein complement(2571200..2571985) Shewanella sp. W3-18-1 4660915 YP_963603.1 CDS ddl NC_008750.1 2572278 2573291 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 2572278..2573291 Shewanella sp. W3-18-1 4661547 YP_963604.1 CDS Sputw3181_2225 NC_008750.1 2573382 2575631 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold domain protein; KEGG: she:Shewmr4_2130 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(2573382..2575631) Shewanella sp. W3-18-1 4660410 YP_963605.1 CDS Sputw3181_2226 NC_008750.1 2575769 2576983 R PFAM: Fmu (Sun) domain protein; KEGG: she:Shewmr4_2131 Fmu (Sun) domain protein; Fmu (Sun) domain-containing protein complement(2575769..2576983) Shewanella sp. W3-18-1 4660694 YP_963606.1 CDS Sputw3181_2228 NC_008750.1 2577333 2577773 R KEGG: cgb:cg2479 hypothetical protein; hypothetical protein complement(2577333..2577773) Shewanella sp. W3-18-1 4660737 YP_963607.1 CDS Sputw3181_2229 NC_008750.1 2577917 2578762 R KEGG: shm:Shewmr7_2218 hypothetical protein; hypothetical protein complement(2577917..2578762) Shewanella sp. W3-18-1 4660633 YP_963608.1 CDS def NC_008750.1 2578993 2579484 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(2578993..2579484) Shewanella sp. W3-18-1 4660587 YP_963609.1 CDS Sputw3181_2231 NC_008750.1 2579753 2580178 D PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: shm:Shewmr7_2220 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 2579753..2580178 Shewanella sp. W3-18-1 4660358 YP_963610.1 CDS Sputw3181_2232 NC_008750.1 2580286 2581176 D KEGG: son:SO2533 hypothetical protein; hypothetical protein 2580286..2581176 Shewanella sp. W3-18-1 4660530 YP_963611.1 CDS Sputw3181_2233 NC_008750.1 2581341 2582120 R PFAM: glutamine amidotransferase, class-II; KEGG: shm:Shewmr7_2222 glutamine amidotransferase, class-II; glutamine amidotransferase, class-II complement(2581341..2582120) Shewanella sp. W3-18-1 4660516 YP_963612.1 CDS fadE NC_008750.1 2582364 2584811 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2582364..2584811 Shewanella sp. W3-18-1 4660467 YP_963613.1 CDS Sputw3181_2235 NC_008750.1 2585073 2585492 R PFAM: PRC-barrel domain protein; KEGG: net:Neut_2352 PRC-barrel domain protein; PRC-barrel domain-containing protein complement(2585073..2585492) Shewanella sp. W3-18-1 4660449 YP_963614.1 CDS Sputw3181_2236 NC_008750.1 2585782 2585943 D KEGG: rfr:Rfer_1879 hypothetical protein; hypothetical protein 2585782..2585943 Shewanella sp. W3-18-1 4659823 YP_963615.1 CDS Sputw3181_2237 NC_008750.1 2585986 2586297 D PFAM: transport-associated; KEGG: son:SO2549 hypothetical protein; transport-associated 2585986..2586297 Shewanella sp. W3-18-1 4660941 YP_963616.1 CDS Sputw3181_2238 NC_008750.1 2586434 2587132 D KEGG: son:SO2550 transcriptional regulator-related protein; CRP/FNR family transcriptional regulator 2586434..2587132 Shewanella sp. W3-18-1 4659872 YP_963617.1 CDS Sputw3181_2239 NC_008750.1 2587387 2588022 D PFAM: cyclic nucleotide-binding; KEGG: son:SO2551 transcriptional regulator-related protein; cyclic nucleotide-binding protein 2587387..2588022 Shewanella sp. W3-18-1 4659408 YP_963618.1 CDS Sputw3181_2240 NC_008750.1 2588403 2588771 D KEGG: son:SO2552 hypothetical protein; hypothetical protein 2588403..2588771 Shewanella sp. W3-18-1 4659377 YP_963619.1 CDS Sputw3181_2241 NC_008750.1 2588863 2589690 D PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: son:SO2553 hyperosmotically inducible periplasmic protein; transport-associated 2588863..2589690 Shewanella sp. W3-18-1 4659312 YP_963620.1 CDS Sputw3181_2242 NC_008750.1 2589806 2590231 D KEGG: son:SO2554 hypothetical protein; hypothetical protein 2589806..2590231 Shewanella sp. W3-18-1 4659288 YP_963621.1 CDS Sputw3181_2243 NC_008750.1 2590228 2591094 D PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_2042 OmpA/MotB; OmpA/MotB domain-containing protein 2590228..2591094 Shewanella sp. W3-18-1 4659255 YP_963622.1 CDS Sputw3181_2244 NC_008750.1 2591667 2593034 R KEGG: shm:Shewmr7_2233 hypothetical protein; hypothetical protein complement(2591667..2593034) Shewanella sp. W3-18-1 4660696 YP_963623.1 CDS Sputw3181_2245 NC_008750.1 2593045 2593773 R KEGG: son:SO2559 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(2593045..2593773) Shewanella sp. W3-18-1 4658826 YP_963624.1 CDS rnhA NC_008750.1 2593844 2594314 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2593844..2594314 Shewanella sp. W3-18-1 4658781 YP_963625.1 CDS Sputw3181_2247 NC_008750.1 2594478 2595374 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2236 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2594478..2595374) Shewanella sp. W3-18-1 4658765 YP_963626.1 CDS Sputw3181_2248 NC_008750.1 2595398 2596132 R PFAM: Methyltransferase type 11; KEGG: she:Shewmr4_2160 methyltransferase type 11; type 11 methyltransferase complement(2595398..2596132) Shewanella sp. W3-18-1 4658732 YP_963627.1 CDS Sputw3181_2249 NC_008750.1 2596298 2597101 D PFAM: beta-lactamase domain protein; KEGG: shm:Shewmr7_2238 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 2596298..2597101 Shewanella sp. W3-18-1 4658355 YP_963628.1 CDS Sputw3181_2250 NC_008750.1 2597344 2598888 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: shm:Shewmr7_2239 MLTD_N domain protein; MltD domain-containing protein 2597344..2598888 Shewanella sp. W3-18-1 4658644 YP_963629.1 CDS Sputw3181_2251 NC_008750.1 2598995 2599600 R KEGG: shm:Shewmr7_2240 intracellular proteinase inhibitor domain protein; intracellular proteinase inhibitor domain-containing protein complement(2598995..2599600) Shewanella sp. W3-18-1 4658135 YP_963630.1 CDS Sputw3181_2252 NC_008750.1 2599600 2601426 R PFAM: AsmA family protein; KEGG: shm:Shewmr7_2241 AsmA family protein; AsmA family protein complement(2599600..2601426) Shewanella sp. W3-18-1 4658127 YP_963631.1 CDS Sputw3181_2253 NC_008750.1 2601469 2601963 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(2601469..2601963) Shewanella sp. W3-18-1 4657718 YP_963632.1 CDS Sputw3181_2254 NC_008750.1 2602197 2602517 D KEGG: son:SO2569 hypothetical protein; hypothetical protein 2602197..2602517 Shewanella sp. W3-18-1 4658015 YP_963633.1 CDS Sputw3181_2255 NC_008750.1 2602776 2604548 R PFAM: protein of unknown function DUF885; KEGG: son:SO2570 lipoprotein, putative; hypothetical protein complement(2602776..2604548) Shewanella sp. W3-18-1 4657689 YP_963634.1 CDS Sputw3181_2256 NC_008750.1 2604928 2606331 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO2571 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 2604928..2606331 Shewanella sp. W3-18-1 4657680 YP_963635.1 CDS Sputw3181_2257 NC_008750.1 2606356 2606850 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: she:Shewmr4_2169 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 2606356..2606850 Shewanella sp. W3-18-1 4657676 YP_963636.1 CDS Sputw3181_2258 NC_008750.1 2606918 2607391 R PFAM: protein of unknown function UPF0153; KEGG: she:Shewmr4_2170 protein of unknown function UPF0153; hypothetical protein complement(2606918..2607391) Shewanella sp. W3-18-1 4657816 YP_963637.1 CDS Sputw3181_2259 NC_008750.1 2607551 2607829 R PFAM: protein of unknown function DUF709; KEGG: son:SO2575 hypothetical protein; hypothetical protein complement(2607551..2607829) Shewanella sp. W3-18-1 4661884 YP_963638.1 CDS minC NC_008750.1 2607953 2608618 D blocks the formation of polar Z-ring septums; septum formation inhibitor 2607953..2608618 Shewanella sp. W3-18-1 4657779 YP_963639.1 CDS Sputw3181_2261 NC_008750.1 2608646 2609455 D TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: shm:Shewmr7_2251 septum site-determining protein MinD; septum site-determining protein MinD 2608646..2609455 Shewanella sp. W3-18-1 4657786 YP_963640.1 CDS minE NC_008750.1 2609458 2609715 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 2609458..2609715 Shewanella sp. W3-18-1 4658372 YP_963641.1 CDS Sputw3181_2263 NC_008750.1 2609788 2610891 R TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: she:Shewmr4_2176 ribonuclease D; ribonuclease D complement(2609788..2610891) Shewanella sp. W3-18-1 4657810 YP_963642.1 CDS Sputw3181_2264 NC_008750.1 2610969 2612642 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(2610969..2612642) Shewanella sp. W3-18-1 4657820 YP_963643.1 CDS Sputw3181_2265 NC_008750.1 2612841 2613707 R PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: shm:Shewmr7_2255 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein complement(2612841..2613707) Shewanella sp. W3-18-1 4657936 YP_963644.1 CDS Sputw3181_2266 NC_008750.1 2613729 2614541 R KEGG: shm:Shewmr7_2256 hypothetical protein; hypothetical protein complement(2613729..2614541) Shewanella sp. W3-18-1 4658083 YP_963645.1 CDS Sputw3181_2267 NC_008750.1 2614744 2615460 R KEGG: she:Shewmr4_2180 hypothetical protein; hypothetical protein complement(2614744..2615460) Shewanella sp. W3-18-1 4658130 YP_963646.1 CDS Sputw3181_2268 NC_008750.1 2615453 2615776 R KEGG: shm:Shewmr7_2258 hypothetical protein; hypothetical protein complement(2615453..2615776) Shewanella sp. W3-18-1 4658190 YP_963647.1 CDS Sputw3181_2269 NC_008750.1 2615883 2616593 R PFAM: peptidase M22, glycoprotease; KEGG: son:SO2586 hypothetical protein; peptidase M22, glycoprotease complement(2615883..2616593) Shewanella sp. W3-18-1 4658227 YP_963648.1 CDS Sputw3181_2270 NC_008750.1 2616985 2617968 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2616985..2617968 Shewanella sp. W3-18-1 4658234 YP_963649.1 CDS Sputw3181_2271 NC_008750.1 2618064 2618969 R this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein complement(2618064..2618969) Shewanella sp. W3-18-1 4658253 YP_963650.1 CDS Sputw3181_2272 NC_008750.1 2619350 2620189 D PFAM: 2OG-Fe(II) oxygenase; KEGG: shm:Shewmr7_2262 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 2619350..2620189 Shewanella sp. W3-18-1 4658260 YP_963651.1 CDS rbgA NC_008750.1 2620340 2621281 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 2620340..2621281 Shewanella sp. W3-18-1 4658269 YP_963652.1 CDS Sputw3181_2274 NC_008750.1 2621672 2622139 R PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB1061 hypothetical protein; N-acetyltransferase GCN5 complement(2621672..2622139) Shewanella sp. W3-18-1 4658274 YP_963653.1 CDS Sputw3181_2275 NC_008750.1 2622438 2622740 R KEGG: shm:Shewmr7_3172 hypothetical protein; hypothetical protein complement(2622438..2622740) Shewanella sp. W3-18-1 4658294 YP_963654.1 CDS Sputw3181_2276 NC_008750.1 2622804 2623286 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: she:Shewmr4_2189 protein tyrosine phosphatase; protein tyrosine phosphatase complement(2622804..2623286) Shewanella sp. W3-18-1 4658314 YP_963655.1 CDS Sputw3181_2277 NC_008750.1 2623340 2624269 R catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase complement(2623340..2624269) Shewanella sp. W3-18-1 4658324 YP_963656.1 CDS Sputw3181_2278 NC_008750.1 2624528 2624899 D PFAM: diacylglycerol kinase; KEGG: shm:Shewmr7_2269 diacylglycerol kinase; diacylglycerol kinase 2624528..2624899 Shewanella sp. W3-18-1 4658443 YP_963657.1 CDS Sputw3181_2279 NC_008750.1 2624979 2625827 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2202 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2624979..2625827) Shewanella sp. W3-18-1 4658379 YP_963658.1 CDS Sputw3181_2280 NC_008750.1 2625936 2626382 D PFAM: protein of unknown function DUF413; KEGG: she:Shewmr4_2194 protein of unknown function DUF413; hypothetical protein 2625936..2626382 Shewanella sp. W3-18-1 4658446 YP_963659.1 CDS Sputw3181_2281 NC_008750.1 2626403 2627398 D TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO2200 ribosomal protein S6 modification protein, putative; alpha-L-glutamate ligase 2626403..2627398 Shewanella sp. W3-18-1 4658374 YP_963660.1 CDS Sputw3181_2282 NC_008750.1 2627724 2628587 D KEGG: shm:Shewmr7_2273 hypothetical protein; hypothetical protein 2627724..2628587 Shewanella sp. W3-18-1 4658353 YP_963661.1 CDS Sputw3181_2283 NC_008750.1 2628645 2630243 R PFAM: peptidase M28; KEGG: she:Shewmr4_2197 peptidase M28; peptidase M28 complement(2628645..2630243) Shewanella sp. W3-18-1 4658748 YP_963662.1 CDS Sputw3181_2284 NC_008750.1 2630432 2631457 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: she:Shewmr4_2198 diguanylate cyclase; diguanylate cyclase 2630432..2631457 Shewanella sp. W3-18-1 4658579 YP_963663.1 CDS Sputw3181_2285 NC_008750.1 2631525 2632139 R TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: she:Shewmr4_2199 sortase family protein; sortase family protein complement(2631525..2632139) Shewanella sp. W3-18-1 4658767 YP_963664.1 CDS Sputw3181_2286 NC_008750.1 2632152 2634425 R KEGG: shm:Shewmr7_2277 vault protein inter-alpha-trypsin domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain; PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; cell wall anchor domain-containing protein complement(2632152..2634425) Shewanella sp. W3-18-1 4658553 YP_963665.1 CDS Sputw3181_2287 NC_008750.1 2634701 2635393 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2193 DNA-binding response regulator; two component transcriptional regulator 2634701..2635393 Shewanella sp. W3-18-1 4658862 YP_963666.1 CDS Sputw3181_2288 NC_008750.1 2635426 2637585 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_2280 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2635426..2637585 Shewanella sp. W3-18-1 4658912 YP_963667.1 CDS Sputw3181_2289 NC_008750.1 2637806 2639005 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 2637806..2639005 Shewanella sp. W3-18-1 4658937 YP_963668.1 CDS Sputw3181_2290 NC_008750.1 2639120 2639608 R PFAM: CreA family protein; KEGG: she:Shewmr4_2205 CreA family protein; CreA family protein complement(2639120..2639608) Shewanella sp. W3-18-1 4659032 YP_963669.1 CDS Sputw3181_2291 NC_008750.1 2639640 2641106 R KEGG: she:Shewmr4_2206 hypothetical protein; putative chaperone complement(2639640..2641106) Shewanella sp. W3-18-1 4659026 YP_963670.1 CDS Sputw3181_2292 NC_008750.1 2641551 2643713 D PFAM: Polyphosphate kinase; KEGG: she:Shewmr4_2207 polyphosphate kinase; polyphosphate kinase 2641551..2643713 Shewanella sp. W3-18-1 4659070 YP_963671.1 CDS Sputw3181_2293 NC_008750.1 2643757 2645310 D PFAM: Ppx/GppA phosphatase; KEGG: she:Shewmr4_2208 Ppx/GppA phosphatase; Ppx/GppA phosphatase 2643757..2645310 Shewanella sp. W3-18-1 4659560 YP_963672.1 CDS Sputw3181_2294 NC_008750.1 2645445 2646692 R PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1697 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2645445..2646692) Shewanella sp. W3-18-1 4659667 YP_963673.1 CDS Sputw3181_2295 NC_008750.1 2646833 2647714 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_1621 transcriptional regulator, LysR family; LysR family transcriptional regulator 2646833..2647714 Shewanella sp. W3-18-1 4658992 YP_963674.1 CDS Sputw3181_2296 NC_008750.1 2647761 2648165 R KEGG: son:SO1913 hypothetical protein; hypothetical protein complement(2647761..2648165) Shewanella sp. W3-18-1 4658957 YP_963675.1 CDS Sputw3181_2297 NC_008750.1 2648167 2649033 R KEGG: she:Shewmr4_1619 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II complement(2648167..2649033) Shewanella sp. W3-18-1 4658955 YP_963676.1 CDS Sputw3181_2298 NC_008750.1 2649151 2650092 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: she:Shewmr4_1618 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2649151..2650092) Shewanella sp. W3-18-1 4659075 YP_963677.1 CDS Sputw3181_2299 NC_008750.1 2650489 2651364 D TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: son:SO1910 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2650489..2651364 Shewanella sp. W3-18-1 4659226 YP_963678.1 CDS Sputw3181_2300 NC_008750.1 2651511 2652323 R PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: son:SO1909 hypothetical protein; extradiol ring-cleavage dioxygenase III subunit B complement(2651511..2652323) Shewanella sp. W3-18-1 4659273 YP_963679.1 CDS Sputw3181_2301 NC_008750.1 2652669 2653559 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1689 transcriptional regulator, LysR family; LysR family transcriptional regulator 2652669..2653559 Shewanella sp. W3-18-1 4659317 YP_963680.1 CDS Sputw3181_2302 NC_008750.1 2653713 2655239 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(2653713..2655239) Shewanella sp. W3-18-1 4659380 YP_963681.1 CDS Sputw3181_2303 NC_008750.1 2655390 2655704 R PFAM: small multidrug resistance protein; KEGG: son:SO1901 sugE protein; small multidrug resistance protein complement(2655390..2655704) Shewanella sp. W3-18-1 4659383 YP_963682.1 CDS Sputw3181_2304 NC_008750.1 2656002 2657960 R PFAM: AMP-dependent synthetase and ligase; KEGG: she:Shewmr4_2319 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(2656002..2657960) Shewanella sp. W3-18-1 4659400 YP_963683.1 CDS Sputw3181_2305 NC_008750.1 2658240 2658644 D PFAM: regulatory protein, MerR; KEGG: shm:Shewmr7_2393 transcriptional regulator, MerR family; MerR family transcriptional regulator 2658240..2658644 Shewanella sp. W3-18-1 4659130 YP_963684.1 CDS Sputw3181_2306 NC_008750.1 2658797 2659966 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: son:SO1897 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2658797..2659966 Shewanella sp. W3-18-1 4659447 YP_963685.1 CDS Sputw3181_2307 NC_008750.1 2660070 2661677 D PFAM: carboxyl transferase; KEGG: she:Shewmr4_2323 propionyl-CoA carboxylase; propionyl-CoA carboxylase 2660070..2661677 Shewanella sp. W3-18-1 4659490 YP_963686.1 CDS Sputw3181_2308 NC_008750.1 2661739 2662605 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO1895 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 2661739..2662605 Shewanella sp. W3-18-1 4659493 YP_963687.1 CDS Sputw3181_2309 NC_008750.1 2662605 2664674 D PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO1894 3-methylcrotonyl-CoA carboxylase alpha subunit; carbamoyl-phosphate synthase subunit L 2662605..2664674 Shewanella sp. W3-18-1 4659502 YP_963688.1 CDS Sputw3181_2310 NC_008750.1 2664675 2665607 D PFAM: pyruvate carboxyltransferase; KEGG: she:Shewmr4_2326 pyruvate carboxyltransferase; pyruvate carboxyltransferase 2664675..2665607 Shewanella sp. W3-18-1 4659534 YP_963689.1 CDS Sputw3181_2311 NC_008750.1 2665661 2666365 D KEGG: son:SO1892 acetate CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2665661..2666365 Shewanella sp. W3-18-1 4659638 YP_963690.1 CDS Sputw3181_2312 NC_008750.1 2666493 2667149 D KEGG: son:SO1891 3-oxoacid CoA-transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 2666493..2667149 Shewanella sp. W3-18-1 4659641 YP_963691.1 CDS Sputw3181_2313 NC_008750.1 2667249 2667683 R hypothetical protein complement(2667249..2667683) Shewanella sp. W3-18-1 4659556 YP_963692.1 CDS Sputw3181_2314 NC_008750.1 2667757 2668779 D hypothetical protein 2667757..2668779 Shewanella sp. W3-18-1 4659573 YP_963693.1 CDS Sputw3181_2315 NC_008750.1 2668916 2669518 D PFAM: ThiJ/PfpI domain protein; KEGG: son:SO1887 hypothetical protein; ThiJ/PfpI domain-containing protein 2668916..2669518 Shewanella sp. W3-18-1 4659604 YP_963694.1 CDS Sputw3181_2316 NC_008750.1 2669557 2669874 D KEGG: shm:Shewmr7_2405 hypothetical protein; hypothetical protein 2669557..2669874 Shewanella sp. W3-18-1 4660271 YP_963695.1 CDS Sputw3181_2317 NC_008750.1 2670067 2670825 D PFAM: protein of unknown function DUF81; KEGG: she:Shewmr4_2333 protein of unknown function DUF81; hypothetical protein 2670067..2670825 Shewanella sp. W3-18-1 4660201 YP_963696.1 CDS Sputw3181_2318 NC_008750.1 2670924 2672108 D PFAM: glucose sorbosone dehydrogenase; KEGG: ilo:IL2579 glucose dehydrogenase, putative; glucose sorbosone dehydrogenase 2670924..2672108 Shewanella sp. W3-18-1 4660237 YP_963697.1 CDS Sputw3181_2319 NC_008750.1 2672216 2672656 D PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_2335 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2672216..2672656 Shewanella sp. W3-18-1 4659755 YP_963698.1 CDS Sputw3181_2320 NC_008750.1 2672790 2675885 R PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_2409 acriflavin resistance protein; acriflavin resistance protein complement(2672790..2675885) Shewanella sp. W3-18-1 4659876 YP_963699.1 CDS Sputw3181_2321 NC_008750.1 2675882 2676967 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_2410 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2675882..2676967) Shewanella sp. W3-18-1 4659678 YP_963700.1 CDS Sputw3181_2322 NC_008750.1 2677323 2678420 R PFAM: NlpBDapX family lipoprotein; KEGG: son:SO1880 lipoprotein-34 NlpB; NlpB/DapX family lipoprotein complement(2677323..2678420) Shewanella sp. W3-18-1 4659677 YP_963701.1 CDS Sputw3181_2323 NC_008750.1 2678424 2679308 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2678424..2679308) Shewanella sp. W3-18-1 4659899 YP_963702.1 CDS Sputw3181_2324 NC_008750.1 2679481 2680032 D KEGG: son:SO1878 glycine cleavage system transcriptional repressor, putative; glycine cleavage system transcriptional repressor 2679481..2680032 Shewanella sp. W3-18-1 4659909 YP_963703.1 CDS bcp NC_008750.1 2680036 2680503 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2680036..2680503 Shewanella sp. W3-18-1 4659588 YP_963704.1 CDS Sputw3181_2326 NC_008750.1 2680701 2681342 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO2865 L-lysine exporter, putative; lysine exporter protein LysE/YggA complement(2680701..2681342) Shewanella sp. W3-18-1 4659927 YP_963705.1 CDS Sputw3181_2327 NC_008750.1 2681454 2682383 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 2681454..2682383 Shewanella sp. W3-18-1 4659563 YP_963706.1 CDS Sputw3181_2328 NC_008750.1 2682464 2683549 R PFAM: protein of unknown function UPF0118; KEGG: shm:Shewmr7_2417 protein of unknown function UPF0118; hypothetical protein complement(2682464..2683549) Shewanella sp. W3-18-1 4659960 YP_963707.1 CDS Sputw3181_2329 NC_008750.1 2683727 2683960 R PFAM: SirA family protein; KEGG: shm:Shewmr7_2418 SirA family protein; SirA family protein complement(2683727..2683960) Shewanella sp. W3-18-1 4659978 YP_963708.1 CDS Sputw3181_2330 NC_008750.1 2684088 2685545 D PFAM: peptidase M48, Ste24p; Tetratricopeptide TPR_2 repeat protein; KEGG: shm:Shewmr7_2419 peptidase M48, Ste24p; peptidase M48, Ste24p 2684088..2685545 Shewanella sp. W3-18-1 4659785 YP_963709.1 CDS Sputw3181_2331 NC_008750.1 2685663 2686013 D TIGRFAM: arsenate reductase; PFAM: arsenate reductase; KEGG: son:SO2871 arsenate reductase, putative; arsenate reductase 2685663..2686013 Shewanella sp. W3-18-1 4660004 YP_963710.1 CDS Sputw3181_2332 NC_008750.1 2686017 2686439 D KEGG: shm:Shewmr7_2421 hypothetical protein; hypothetical protein 2686017..2686439 Shewanella sp. W3-18-1 4660032 YP_963711.1 CDS Sputw3181_2333 NC_008750.1 2686666 2688621 D KEGG: son:SO2876 hypothetical protein; hypothetical protein 2686666..2688621 Shewanella sp. W3-18-1 4660074 YP_963712.1 CDS Sputw3181_2334 NC_008750.1 2688703 2689413 R controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor complement(2688703..2689413) Shewanella sp. W3-18-1 4660110 YP_963713.1 CDS Sputw3181_2335 NC_008750.1 2689502 2690593 R KEGG: she:Shewmr4_1575 hypothetical protein; hypothetical protein complement(2689502..2690593) Shewanella sp. W3-18-1 4660121 YP_963714.1 CDS Sputw3181_2336 NC_008750.1 2690799 2692037 D TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: she:Shewmr4_1574 uracil-xanthine permease; uracil-xanthine permease 2690799..2692037 Shewanella sp. W3-18-1 4660139 YP_963715.1 CDS Sputw3181_2337 NC_008750.1 2692137 2692469 R TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: shm:Shewmr7_1648 glutaredoxin-like protein; glutaredoxin-like protein complement(2692137..2692469) Shewanella sp. W3-18-1 4660161 YP_963716.1 CDS Sputw3181_2338 NC_008750.1 2692695 2693279 D PFAM: manganese and iron superoxide dismutase; KEGG: shm:Shewmr7_1647 superoxide dismutase; superoxide dismutase 2692695..2693279 Shewanella sp. W3-18-1 4660170 YP_963717.1 CDS Sputw3181_2339 NC_008750.1 2693530 2695464 D PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: shm:Shewmr7_1646 putative serine protein kinase, PrkA; putative serine protein kinase PrkA 2693530..2695464 Shewanella sp. W3-18-1 4660181 YP_963718.1 CDS Sputw3181_2340 NC_008750.1 2695525 2696799 D PFAM: protein of unknown function DUF444; KEGG: shm:Shewmr7_1645 protein of unknown function DUF444; hypothetical protein 2695525..2696799 Shewanella sp. W3-18-1 4660238 YP_963719.1 CDS Sputw3181_2341 NC_008750.1 2696809 2698326 D PFAM: SpoVR family protein; KEGG: son:SO2884 hypothetical protein; SpoVR family protein 2696809..2698326 Shewanella sp. W3-18-1 4660264 YP_963720.1 CDS Sputw3181_2342 NC_008750.1 2698412 2699155 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(2698412..2699155) Shewanella sp. W3-18-1 4660274 YP_963721.1 CDS nhaB NC_008750.1 2699442 2701028 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 2699442..2701028 Shewanella sp. W3-18-1 4660480 YP_963722.1 CDS Sputw3181_2344 NC_008750.1 2701088 2701654 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 2701088..2701654 Shewanella sp. W3-18-1 4660489 YP_963723.1 CDS Sputw3181_2345 NC_008750.1 2701791 2704430 D KEGG: she:Shewmr4_1565 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 2701791..2704430 Shewanella sp. W3-18-1 4660286 YP_963724.1 CDS Sputw3181_2346 NC_008750.1 2704532 2706244 R activates fatty acids by binding to coenzyme A; AMP-binding protein complement(2704532..2706244) Shewanella sp. W3-18-1 4660670 YP_963725.1 CDS Sputw3181_2347 NC_008750.1 2706384 2706764 R KEGG: son:SO1970 hypothetical protein; hypothetical protein complement(2706384..2706764) Shewanella sp. W3-18-1 4660674 YP_963726.1 CDS Sputw3181_2348 NC_008750.1 2707051 2707512 D PFAM: protein of unknown function DUF55; KEGG: son:SO1969 hypothetical protein; hypothetical protein 2707051..2707512 Shewanella sp. W3-18-1 4660781 YP_963727.1 CDS Sputw3181_2349 NC_008750.1 2707598 2707936 D KEGG: shm:Shewmr7_2360 hypothetical protein; hypothetical protein 2707598..2707936 Shewanella sp. W3-18-1 4660798 YP_963728.1 CDS Sputw3181_2350 NC_008750.1 2708247 2709512 D KEGG: son:SO1967 hypothetical protein; hypothetical protein 2708247..2709512 Shewanella sp. W3-18-1 4660819 YP_963729.1 CDS Sputw3181_2351 NC_008750.1 2709924 2712779 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_2471 TonB-dependent receptor; TonB-dependent receptor 2709924..2712779 Shewanella sp. W3-18-1 4660825 YP_963730.1 CDS Sputw3181_2352 NC_008750.1 2712874 2713668 R PFAM: protein of unknown function DUF124; KEGG: she:Shewmr4_2289 protein of unknown function DUF124; hypothetical protein complement(2712874..2713668) Shewanella sp. W3-18-1 4660887 YP_963731.1 CDS Sputw3181_2353 NC_008750.1 2713869 2714783 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1965 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2713869..2714783) Shewanella sp. W3-18-1 4660933 YP_963732.1 CDS Sputw3181_2354 NC_008750.1 2714976 2716136 D PFAM: homogentisate 1,2-dioxygenase; KEGG: shm:Shewmr7_2363 homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygenase 2714976..2716136 Shewanella sp. W3-18-1 4661006 YP_963733.1 CDS Sputw3181_2355 NC_008750.1 2716213 2717253 D KEGG: son:SO1962 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2716213..2717253 Shewanella sp. W3-18-1 4660937 YP_963734.1 CDS Sputw3181_2356 NC_008750.1 2717415 2718038 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: she:Shewmr4_2295 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 2717415..2718038 Shewanella sp. W3-18-1 4661039 YP_963735.1 CDS Sputw3181_2357 NC_008750.1 2718113 2719408 R PFAM: protein of unknown function DUF482; KEGG: son:SO1953 hypothetical protein; hypothetical protein complement(2718113..2719408) Shewanella sp. W3-18-1 4660950 YP_963736.1 CDS Sputw3181_2358 NC_008750.1 2719517 2721256 D KEGG: shm:Shewmr7_2369 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2719517..2721256 Shewanella sp. W3-18-1 4657768 YP_963737.1 CDS Sputw3181_2359 NC_008750.1 2721532 2722044 R PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_2373 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2721532..2722044) Shewanella sp. W3-18-1 4661811 YP_963738.1 CDS Sputw3181_2360 NC_008750.1 2722066 2722614 R PFAM: nitroreductase; KEGG: shm:Shewmr7_2374 nitroreductase; nitroreductase complement(2722066..2722614) Shewanella sp. W3-18-1 4661823 YP_963739.1 CDS Sputw3181_2361 NC_008750.1 2722811 2723692 R KEGG: son:SO2711 hypothetical protein; hypothetical protein complement(2722811..2723692) Shewanella sp. W3-18-1 4661678 YP_963740.1 CDS Sputw3181_2362 NC_008750.1 2723891 2724994 R PFAM: aminoglycoside phosphotransferase; KEGG: son:SO2712 hypothetical protein; aminoglycoside phosphotransferase complement(2723891..2724994) Shewanella sp. W3-18-1 4661587 YP_963741.1 CDS Sputw3181_2363 NC_008750.1 2725025 2725726 R TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: shm:Shewmr7_2378 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC complement(2725025..2725726) Shewanella sp. W3-18-1 4661168 YP_963742.1 CDS Sputw3181_2364 NC_008750.1 2725756 2726016 R KEGG: son:SO2714 hypothetical protein; hypothetical protein complement(2725756..2726016) Shewanella sp. W3-18-1 4660406 YP_963743.1 CDS Sputw3181_2365 NC_008750.1 2726119 2728308 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2715 TonB-dependent receptor; TonB-dependent receptor complement(2726119..2728308) Shewanella sp. W3-18-1 4660403 YP_963744.1 CDS Sputw3181_2366 NC_008750.1 2728713 2729393 D PFAM: cyclic nucleotide-binding; KEGG: son:SO2717 cyclic nucleotide binding protein, putative; cyclic nucleotide-binding protein 2728713..2729393 Shewanella sp. W3-18-1 4660709 YP_963745.1 CDS Sputw3181_2367 NC_008750.1 2729470 2730624 R PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2718 hypothetical protein; hypothetical protein complement(2729470..2730624) Shewanella sp. W3-18-1 4660396 YP_963746.1 CDS Sputw3181_2368 NC_008750.1 2730675 2731379 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(2730675..2731379) Shewanella sp. W3-18-1 4660390 YP_963747.1 CDS Sputw3181_2369 NC_008750.1 2731669 2731896 D KEGG: she:Shewmr4_1960 hypothetical protein; hypothetical protein 2731669..2731896 Shewanella sp. W3-18-1 4660640 YP_963748.1 CDS Sputw3181_2370 NC_008750.1 2731934 2732329 R PFAM: protein of unknown function DUF1425; KEGG: son:SO2720 hypothetical protein; hypothetical protein complement(2731934..2732329) Shewanella sp. W3-18-1 4660366 YP_963749.1 CDS Sputw3181_2371 NC_008750.1 2732463 2733470 R TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2383 uncharacterized domain 1; hypothetical protein complement(2732463..2733470) Shewanella sp. W3-18-1 4660364 YP_963750.1 CDS Sputw3181_2372 NC_008750.1 2733467 2733823 R PFAM: histidine triad (HIT) protein; KEGG: shm:Shewmr7_2384 histidine triad (HIT) protein; histidine triad (HIT) protein complement(2733467..2733823) Shewanella sp. W3-18-1 4660359 YP_963751.1 CDS Sputw3181_2373 NC_008750.1 2733968 2735746 D PFAM: peptidase M61 domain protein; KEGG: shm:Shewmr7_2385 peptidase M61 domain protein; peptidase M61 domain-containing protein 2733968..2735746 Shewanella sp. W3-18-1 4660328 YP_963752.1 CDS Sputw3181_2374 NC_008750.1 2735843 2736196 R KEGG: shm:Shewmr7_1637 hypothetical protein; hypothetical protein complement(2735843..2736196) Shewanella sp. W3-18-1 4660323 YP_963753.1 CDS Sputw3181_2375 NC_008750.1 2736374 2736949 R PFAM: YceI family protein; KEGG: shm:Shewmr7_1636 YceI family protein; hypothetical protein complement(2736374..2736949) Shewanella sp. W3-18-1 4660493 YP_963754.1 CDS Sputw3181_2376 NC_008750.1 2737070 2737537 R PFAM: protein of unknown function DUF188; KEGG: she:Shewmr4_1560 protein of unknown function DUF188; hypothetical protein complement(2737070..2737537) Shewanella sp. W3-18-1 4660473 YP_963755.1 CDS Sputw3181_2377 NC_008750.1 2737652 2738290 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase complement(2737652..2738290) Shewanella sp. W3-18-1 4660218 YP_963756.1 CDS Sputw3181_2378 NC_008750.1 2738479 2739450 R PFAM: S-adenosylmethionine decarboxylase; KEGG: son:SO1871 S-adenosylmethionine decarboxylase proenzyme, putative; adenosylmethionine decarboxylase complement(2738479..2739450) Shewanella sp. W3-18-1 4660456 YP_963757.1 CDS Sputw3181_2379 NC_008750.1 2739580 2741493 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(2739580..2741493) Shewanella sp. W3-18-1 4660070 YP_963758.1 CDS Sputw3181_2380 NC_008750.1 2742664 2743506 D KEGG: she:Shewmr4_1555 hypothetical protein; hypothetical protein 2742664..2743506 Shewanella sp. W3-18-1 4660061 YP_963759.1 CDS Sputw3181_2381 NC_008750.1 2743632 2744297 D PFAM: protein of unknown function DUF480; KEGG: son:SO1867 hypothetical protein; hypothetical protein 2743632..2744297 Shewanella sp. W3-18-1 4659832 YP_963760.1 CDS Sputw3181_2382 NC_008750.1 2744370 2745200 D KEGG: son:SO1866 hypothetical protein; hypothetical protein 2744370..2745200 Shewanella sp. W3-18-1 4659985 YP_963761.1 CDS Sputw3181_2383 NC_008750.1 2745197 2746123 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1865 ABC transporter, ATP-binding protein; ABC transporter-like protein 2745197..2746123 Shewanella sp. W3-18-1 4659804 YP_963762.1 CDS Sputw3181_2384 NC_008750.1 2747427 2747975 R KEGG: she:Shewmr4_1549 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(2747427..2747975) Shewanella sp. W3-18-1 4660373 YP_963763.1 CDS uvrC NC_008750.1 2748023 2749852 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2748023..2749852) Shewanella sp. W3-18-1 4659966 YP_963764.1 CDS Sputw3181_2386 NC_008750.1 2749919 2750599 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator complement(2749919..2750599) Shewanella sp. W3-18-1 4659942 YP_963765.1 CDS Sputw3181_2387 NC_008750.1 2751736 2753469 D KEGG: shm:Shewmr7_1613 conserved hypothetical ATP-dependent protease; ATP-dependent protease 2751736..2753469 Shewanella sp. W3-18-1 4660352 YP_963766.1 CDS Sputw3181_2388 NC_008750.1 2753544 2754059 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 2753544..2754059 Shewanella sp. W3-18-1 4661331 YP_963767.1 CDS Sputw3181_2389 NC_008750.1 2754167 2754343 R PFAM: ribosome modulation factor; KEGG: shm:Shewmr7_1611 ribosome modulation factor; ribosome modulation factor complement(2754167..2754343) Shewanella sp. W3-18-1 4659133 YP_963768.1 CDS Sputw3181_2390 NC_008750.1 2754530 2756362 R KEGG: shm:Shewmr7_1610 hypothetical protein; hypothetical protein complement(2754530..2756362) Shewanella sp. W3-18-1 4659397 YP_963769.1 CDS Sputw3181_2391 NC_008750.1 2756391 2758316 R Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase complement(2756391..2758316) Shewanella sp. W3-18-1 4659117 YP_963770.1 CDS Sputw3181_2392 NC_008750.1 2758318 2758578 R PFAM: glutaredoxin; glutaredoxin 2; KEGG: she:Shewmr4_1541 glutaredoxin 2; glutaredoxin complement(2758318..2758578) Shewanella sp. W3-18-1 4659115 YP_963771.1 CDS rlmL NC_008750.1 2758571 2760700 R catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase complement(2758571..2760700) Shewanella sp. W3-18-1 4659114 YP_963772.1 CDS Sputw3181_2394 NC_008750.1 2762109 2762393 D PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO1850 DnaJ domain protein; heat shock protein DnaJ domain-containing protein 2762109..2762393 Shewanella sp. W3-18-1 4660428 YP_963773.1 CDS Sputw3181_2395 NC_008750.1 2762416 2762946 D KEGG: son:SO1849 hypothetical protein; hypothetical protein 2762416..2762946 Shewanella sp. W3-18-1 4659325 YP_963774.1 CDS Sputw3181_2396 NC_008750.1 2762946 2763704 D KEGG: she:Shewmr4_1537 hypothetical protein; hypothetical protein 2762946..2763704 Shewanella sp. W3-18-1 4659323 YP_963775.1 CDS Sputw3181_2397 NC_008750.1 2763716 2764612 D KEGG: shm:Shewmr7_1603 hypothetical protein; hypothetical protein 2763716..2764612 Shewanella sp. W3-18-1 4659306 YP_963776.1 CDS Sputw3181_2398 NC_008750.1 2764822 2765214 R KEGG: son:SO1845 hypothetical protein; hypothetical protein complement(2764822..2765214) Shewanella sp. W3-18-1 4659105 YP_963777.1 CDS Sputw3181_2399 NC_008750.1 2766220 2767980 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: ava:Ava_3254 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase complement(2766220..2767980) Shewanella sp. W3-18-1 4659100 YP_963778.1 CDS Sputw3181_2400 NC_008750.1 2768856 2771690 R PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: son:SO1844 extracellular nuclease, putative; endonuclease/exonuclease/phosphatase complement(2768856..2771690) Shewanella sp. W3-18-1 4659063 YP_963779.1 CDS Sputw3181_2401 NC_008750.1 2771984 2772487 R KEGG: shm:Shewmr7_1600 hypothetical protein; hypothetical protein complement(2771984..2772487) Shewanella sp. W3-18-1 4659072 YP_963780.1 CDS Sputw3181_2402 NC_008750.1 2772487 2773650 R KEGG: shm:Shewmr7_1599 hypothetical protein; hypothetical protein complement(2772487..2773650) Shewanella sp. W3-18-1 4658999 YP_963781.1 CDS Sputw3181_2403 NC_008750.1 2773637 2774728 R KEGG: son:SO1840 hypothetical protein; hypothetical protein complement(2773637..2774728) Shewanella sp. W3-18-1 4659033 YP_963782.1 CDS Sputw3181_2404 NC_008750.1 2774865 2775671 D KEGG: son:SO1839 hypothetical protein; hypothetical protein 2774865..2775671 Shewanella sp. W3-18-1 4659035 YP_963783.1 CDS Sputw3181_2405 NC_008750.1 2775684 2776082 R KEGG: shm:Shewmr7_1597 hypothetical protein; hypothetical protein complement(2775684..2776082) Shewanella sp. W3-18-1 4659156 YP_963784.1 CDS Sputw3181_2406 NC_008750.1 2776238 2776633 R KEGG: shm:Shewmr7_1596 hypothetical protein; hypothetical protein complement(2776238..2776633) Shewanella sp. W3-18-1 4658852 YP_963785.1 CDS Sputw3181_2407 NC_008750.1 2776671 2777135 R PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1595 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2776671..2777135) Shewanella sp. W3-18-1 4658837 YP_963786.1 CDS Sputw3181_2408 NC_008750.1 2777168 2777770 R PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1594 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2777168..2777770) Shewanella sp. W3-18-1 4658611 YP_963787.1 CDS Sputw3181_2409 NC_008750.1 2778124 2778747 R SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: shm:Shewmr7_1593 prolyl 4-hydroxylase, alpha subunit; prolyl 4-hydroxylase subunit alpha complement(2778124..2778747) Shewanella sp. W3-18-1 4658813 YP_963788.1 CDS Sputw3181_2410 NC_008750.1 2778966 2781110 R PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: shm:Shewmr7_1592 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp complement(2778966..2781110) Shewanella sp. W3-18-1 4658780 YP_963789.1 CDS cpdB NC_008750.1 2781818 2783884 D periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein 2781818..2783884 Shewanella sp. W3-18-1 4658581 YP_963790.1 CDS Sputw3181_2412 NC_008750.1 2784088 2784843 D KEGG: shm:Shewmr7_1590 hypothetical protein; hypothetical protein 2784088..2784843 Shewanella sp. W3-18-1 4661279 YP_963791.1 CDS Sputw3181_2413 NC_008750.1 2785757 2786506 R TIGRFAM: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_2438 hypothetical protein; hypothetical protein complement(2785757..2786506) Shewanella sp. W3-18-1 4659913 YP_963792.1 CDS Sputw3181_2414 NC_008750.1 2786531 2787067 R TIGRFAM: OmpA domain protein; PFAM: OmpA/MotB domain protein; KEGG: shm:Shewmr7_2439 OmpA/MotB domain protein; OmpA domain-containing protein complement(2786531..2787067) Shewanella sp. W3-18-1 4658730 YP_963793.1 CDS tolB NC_008750.1 2787114 2788442 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(2787114..2788442) Shewanella sp. W3-18-1 4658640 YP_963794.1 CDS Sputw3181_2416 NC_008750.1 2788452 2789441 R PFAM: TolA family protein; KEGG: she:Shewmr4_2369 TolA family protein; TolA family protein complement(2788452..2789441) Shewanella sp. W3-18-1 4658634 YP_963795.1 CDS Sputw3181_2417 NC_008750.1 2789442 2789876 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: she:Shewmr4_2370 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(2789442..2789876) Shewanella sp. W3-18-1 4658158 YP_963796.1 CDS Sputw3181_2418 NC_008750.1 2789876 2790562 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: shm:Shewmr7_2443 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(2789876..2790562) Shewanella sp. W3-18-1 4660953 YP_963797.1 CDS Sputw3181_2419 NC_008750.1 2790552 2790953 R TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2444 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase complement(2790552..2790953) Shewanella sp. W3-18-1 4658113 YP_963798.1 CDS Sputw3181_2420 NC_008750.1 2791123 2793312 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: shm:Shewmr7_2445 prolyl oligopeptidase; prolyl oligopeptidase complement(2791123..2793312) Shewanella sp. W3-18-1 4658089 YP_963799.1 CDS Sputw3181_2421 NC_008750.1 2793869 2794738 R PFAM: OmpA/MotB domain protein; KEGG: she:Shewmr4_2374 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(2793869..2794738) Shewanella sp. W3-18-1 4657712 YP_963800.1 CDS Sputw3181_2422 NC_008750.1 2794881 2795552 D Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 2794881..2795552 Shewanella sp. W3-18-1 4657996 YP_963801.1 CDS Sputw3181_2423 NC_008750.1 2795635 2796240 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_2448 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase complement(2795635..2796240) Shewanella sp. W3-18-1 4657995 YP_963802.1 CDS Sputw3181_2424 NC_008750.1 2796627 2797946 D PFAM: Gluconate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO2757 membrane protein, putative; Na+/H+ antiporter NhaC 2796627..2797946 Shewanella sp. W3-18-1 4657982 YP_963803.1 CDS upp NC_008750.1 2798072 2798698 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2798072..2798698) Shewanella sp. W3-18-1 4657681 YP_963804.1 CDS Sputw3181_2426 NC_008750.1 2799031 2800068 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2799031..2800068 Shewanella sp. W3-18-1 4657857 YP_963805.1 CDS purN NC_008750.1 2800068 2800712 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2800068..2800712 Shewanella sp. W3-18-1 4657830 YP_963806.1 CDS Sputw3181_2428 NC_008750.1 2800869 2801615 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO2762 nagD protein; UMP phosphatase 2800869..2801615 Shewanella sp. W3-18-1 4657789 YP_963807.1 CDS Sputw3181_2429 NC_008750.1 2801815 2803488 D PFAM: peptidase M28; KEGG: shm:Shewmr7_2455 peptidase M28; peptidase M28 2801815..2803488 Shewanella sp. W3-18-1 4657793 YP_963808.1 CDS asnB NC_008750.1 2804071 2805735 D functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 2804071..2805735 Shewanella sp. W3-18-1 4658366 YP_963809.1 CDS Sputw3181_2431 NC_008750.1 2805928 2807097 R PFAM: Patatin; KEGG: sfr:Sfri_0718 patatin; patatin complement(2805928..2807097) Shewanella sp. W3-18-1 4658432 YP_963810.1 CDS Sputw3181_2432 NC_008750.1 2807340 2809553 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_2386 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(2807340..2809553) Shewanella sp. W3-18-1 4657796 YP_963811.1 CDS Sputw3181_2433 NC_008750.1 2809863 2811653 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: she:Shewmr4_2387 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(2809863..2811653) Shewanella sp. W3-18-1 4657827 YP_963812.1 CDS Sputw3181_2434 NC_008750.1 2811901 2812749 D PFAM: Aldose 1-epimerase; KEGG: shm:Shewmr7_2460 aldose 1-epimerase; aldose 1-epimerase 2811901..2812749 Shewanella sp. W3-18-1 4657866 YP_963813.1 CDS Sputw3181_2435 NC_008750.1 2812868 2813743 R PFAM: oxidoreductase domain protein; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: she:Shewmr4_2391 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase complement(2812868..2813743) Shewanella sp. W3-18-1 4657896 YP_963814.1 CDS Sputw3181_2436 NC_008750.1 2814051 2814530 R PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2462 thioesterase superfamily protein; thioesterase superfamily protein complement(2814051..2814530) Shewanella sp. W3-18-1 4657688 YP_963815.1 CDS Sputw3181_2437 NC_008750.1 2814649 2815017 R KEGG: shm:Shewmr7_2463 hypothetical protein; hypothetical protein complement(2814649..2815017) Shewanella sp. W3-18-1 4657964 YP_963816.1 CDS Sputw3181_2438 NC_008750.1 2815181 2816419 R PFAM: beta-ketoacyl synthase; KEGG: son:SO2774 3-oxoacyl-(acyl-carrier-protein) synthase II; beta-ketoacyl synthase complement(2815181..2816419) Shewanella sp. W3-18-1 4658029 YP_963817.1 CDS acpP NC_008750.1 2816645 2816878 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2816645..2816878) Shewanella sp. W3-18-1 4658099 YP_963818.1 CDS Sputw3181_2440 NC_008750.1 2817043 2817789 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: son:SO2776 3-oxoacyl-[acyl-carrier protein] reductase; 3-oxoacyl-(acyl-carrier-protein) reductase complement(2817043..2817789) Shewanella sp. W3-18-1 4658141 YP_963819.1 CDS Sputw3181_2441 NC_008750.1 2817799 2818725 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: shm:Shewmr7_2467 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase complement(2817799..2818725) Shewanella sp. W3-18-1 4658187 YP_963820.1 CDS Sputw3181_2442 NC_008750.1 2818813 2819772 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(2818813..2819772) Shewanella sp. W3-18-1 4658290 YP_963821.1 CDS Sputw3181_2443 NC_008750.1 2819782 2820810 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(2819782..2820810) Shewanella sp. W3-18-1 4658354 YP_963822.1 CDS rpmF NC_008750.1 2820826 2820996 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(2820826..2820996) Shewanella sp. W3-18-1 4658990 YP_963823.1 CDS Sputw3181_2445 NC_008750.1 2821014 2821538 R PFAM: protein of unknown function DUF177; KEGG: shm:Shewmr7_2471 protein of unknown function DUF177; hypothetical protein complement(2821014..2821538) Shewanella sp. W3-18-1 4658450 YP_963824.1 CDS Sputw3181_2446 NC_008750.1 2821771 2822385 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO2782 maf protein, putative; maf protein 2821771..2822385 Shewanella sp. W3-18-1 4658439 YP_963825.1 CDS Sputw3181_2447 NC_008750.1 2822549 2823265 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: she:Shewmr4_2403 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase complement(2822549..2823265) Shewanella sp. W3-18-1 4658388 YP_963826.1 CDS Sputw3181_2448 NC_008750.1 2823288 2824280 R KEGG: shm:Shewmr7_2474 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(2823288..2824280) Shewanella sp. W3-18-1 4658382 YP_963827.1 CDS Sputw3181_2449 NC_008750.1 2824789 2828175 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: she:Shewmr4_2405 ribonuclease, Rne/Rng family; ribonuclease 2824789..2828175 Shewanella sp. W3-18-1 4658750 YP_963828.1 CDS Sputw3181_2450 NC_008750.1 2828884 2829093 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: shm:Shewmr7_2477 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein complement(2828884..2829093) Shewanella sp. W3-18-1 4658771 YP_963829.1 CDS rrmA NC_008750.1 2829393 2830208 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A complement(2829393..2830208) Shewanella sp. W3-18-1 4658799 YP_963830.1 CDS Sputw3181_2452 NC_008750.1 2830249 2831049 R KEGG: son:SO2789 hypothetical protein; hypothetical protein complement(2830249..2831049) Shewanella sp. W3-18-1 4658882 YP_963831.1 CDS Sputw3181_2453 NC_008750.1 2831515 2832057 D KEGG: son:SO2938 hypothetical protein; hypothetical protein 2831515..2832057 Shewanella sp. W3-18-1 4658888 YP_963832.1 CDS Sputw3181_2454 NC_008750.1 2832058 2832768 R KEGG: son:SO2939 hypothetical protein; hypothetical protein complement(2832058..2832768) Shewanella sp. W3-18-1 4658923 YP_963833.1 CDS Sputw3181_2455 NC_008750.1 2832772 2833095 R hypothetical protein complement(2832772..2833095) Shewanella sp. W3-18-1 4659007 YP_963834.1 CDS Sputw3181_2456 NC_008750.1 2833092 2839295 R PFAM: Carbohydrate-binding family V/XII; Fibronectin, type III domain protein; KEGG: son:SO2940 prophage LambdaSo, host specificity protein J, putative; carbohydrate-binding family V/XII protein complement(2833092..2839295) Shewanella sp. W3-18-1 4659013 YP_963835.1 CDS Sputw3181_2457 NC_008750.1 2839301 2839951 R PFAM: bacteriophage lambda tail assembly I; KEGG: son:SO2941 prophage LambdaSo, tail assembly protein I; bacteriophage lambda tail assembly I complement(2839301..2839951) Shewanella sp. W3-18-1 4659601 YP_963836.1 CDS Sputw3181_2458 NC_008750.1 2840072 2840962 R KEGG: sec:SC2612 hypothetical protein; phage protein complement(2840072..2840962) Shewanella sp. W3-18-1 4659037 YP_963837.1 CDS Sputw3181_2459 NC_008750.1 2840959 2841633 R KEGG: ecs:ECs1200 DNA-binding protein; DNA-binding protein complement(2840959..2841633) Shewanella sp. W3-18-1 4659015 YP_963838.1 CDS Sputw3181_2460 NC_008750.1 2841911 2842402 D PFAM: Arc domain protein DNA binding domain protein; KEGG: pau:PA14_20290 DNA binding-protein; Arc domain-containing protein 2841911..2842402 Shewanella sp. W3-18-1 4658986 YP_963839.1 CDS Sputw3181_2461 NC_008750.1 2842441 2842959 R KEGG: dvu:DVU0290 lipoprotein, putative; putative lipoprotein complement(2842441..2842959) Shewanella sp. W3-18-1 4659240 YP_963840.1 CDS Sputw3181_2462 NC_008750.1 2843046 2843759 R PFAM: NLP/P60 protein; SMART: Mov34/MPN/PAD-1 family protein; KEGG: son:SO2948 prophage LambdaSo, tail assembly protein K, putative; NLP/P60 protein complement(2843046..2843759) Shewanella sp. W3-18-1 4659290 YP_963841.1 CDS Sputw3181_2463 NC_008750.1 2843811 2844536 R PFAM: phage minor tail protein L; KEGG: son:SO2949 prophage LambdaSo, minor tail protein L; phage minor tail protein L complement(2843811..2844536) Shewanella sp. W3-18-1 4659352 YP_963842.1 CDS Sputw3181_2464 NC_008750.1 2844529 2844816 R hypothetical protein complement(2844529..2844816) Shewanella sp. W3-18-1 4659415 YP_963843.1 CDS Sputw3181_2465 NC_008750.1 2844803 2846077 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: ana:alr3497 hypothetical protein; RNA-directed DNA polymerase complement(2844803..2846077) Shewanella sp. W3-18-1 4659465 YP_963844.1 CDS Sputw3181_2466 NC_008750.1 2846074 2846427 R KEGG: par:Psyc_0448 hypothetical protein; hypothetical protein complement(2846074..2846427) Shewanella sp. W3-18-1 4659142 YP_963845.1 CDS Sputw3181_2467 NC_008750.1 2846487 2847692 R hypothetical protein complement(2846487..2847692) Shewanella sp. W3-18-1 4659516 YP_963846.1 CDS Sputw3181_2468 NC_008750.1 2847732 2848067 R PFAM: phage minor tail family protein; KEGG: son:SO2952 prophage LambdaSo, minor tail protein M, putative; phage minor tail family protein complement(2847732..2848067) Shewanella sp. W3-18-1 4659540 YP_963847.1 CDS Sputw3181_2469 NC_008750.1 2848071 2848376 R hypothetical protein complement(2848071..2848376) Shewanella sp. W3-18-1 4659547 YP_963848.1 CDS Sputw3181_2470 NC_008750.1 2848378 2851794 R TIGRFAM: phage tail tape measure protein, lambda family; PFAM: Prophage tail length tape measure; KEGG: son:SO2953 prophage LambdaSo, tail length tape meausure protein; lambda family phage tail tape measure protein complement(2848378..2851794) Shewanella sp. W3-18-1 4659657 YP_963849.1 CDS Sputw3181_2471 NC_008750.1 2851875 2852018 R KEGG: son:SO2954 hypothetical protein; hypothetical protein complement(2851875..2852018) Shewanella sp. W3-18-1 4659654 YP_963850.1 CDS Sputw3181_2472 NC_008750.1 2852057 2852551 R KEGG: son:SO2955 hypothetical protein; hypothetical protein complement(2852057..2852551) Shewanella sp. W3-18-1 4660239 YP_963851.1 CDS Sputw3181_2473 NC_008750.1 2852641 2853114 R KEGG: son:SO2956 prophage LambdaSo, major tail protein V, putative; prophage LambdaSo, major tail protein V complement(2852641..2853114) Shewanella sp. W3-18-1 4660250 YP_963852.1 CDS Sputw3181_2474 NC_008750.1 2853205 2853573 R KEGG: son:SO2957 hypothetical protein; hypothetical protein complement(2853205..2853573) Shewanella sp. W3-18-1 4659673 YP_963853.1 CDS Sputw3181_2475 NC_008750.1 2853570 2854034 R TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: son:SO2958 hypothetical protein; HK97 family phage protein complement(2853570..2854034) Shewanella sp. W3-18-1 4659676 YP_963854.1 CDS Sputw3181_2476 NC_008750.1 2854036 2854398 R PFAM: phage head-tail adaptor, putative; KEGG: son:SO2960 hypothetical protein; phage head-tail adaptor complement(2854036..2854398) Shewanella sp. W3-18-1 4659902 YP_963855.1 CDS Sputw3181_2477 NC_008750.1 2854398 2854694 R KEGG: son:SO2961 hypothetical protein; hypothetical protein complement(2854398..2854694) Shewanella sp. W3-18-1 4659628 YP_963856.1 CDS Sputw3181_2478 NC_008750.1 2854716 2855015 R KEGG: son:SO2962 hypothetical protein; hypothetical protein complement(2854716..2855015) Shewanella sp. W3-18-1 4659580 YP_963857.1 CDS Sputw3181_2479 NC_008750.1 2855112 2856302 R TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: son:SO2963 prophage LambdaSo, major capsid protein, HK97 family; HK97 family phage major capsid protein complement(2855112..2856302) Shewanella sp. W3-18-1 4659082 YP_963858.1 CDS Sputw3181_2480 NC_008750.1 2856315 2857169 R PFAM: peptidase S14, ClpP; KEGG: son:SO2964 ClpP protease family protein; peptidase S14, ClpP complement(2856315..2857169) Shewanella sp. W3-18-1 4660020 YP_963859.1 CDS Sputw3181_2481 NC_008750.1 2857179 2858477 R TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: son:SO2965 prophage LambdaSo, portal protein, HK97 family; HK97 family phage portal protein complement(2857179..2858477) Shewanella sp. W3-18-1 4660112 YP_963860.1 CDS Sputw3181_2482 NC_008750.1 2858474 2858635 R KEGG: son:SO2966 hypothetical protein; hypothetical protein complement(2858474..2858635) Shewanella sp. W3-18-1 4660145 YP_963861.1 CDS Sputw3181_2483 NC_008750.1 2858635 2860380 R PFAM: phage Terminase; KEGG: son:SO2967 hypothetical phage terminase large subunit; phage terminase complement(2858635..2860380) Shewanella sp. W3-18-1 4660173 YP_963862.1 CDS Sputw3181_2484 NC_008750.1 2860337 2860849 R TIGRFAM: phage terminase, small subunit, putative, P27 family; PFAM: phage terminase, small subunit, putative, P27; KEGG: son:SO2968 hypothetical phage terminase, small subunit; P27 family phage terminase small subunit complement(2860337..2860849) Shewanella sp. W3-18-1 4660220 YP_963863.1 CDS Sputw3181_2485 NC_008750.1 2860860 2861189 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: son:SO2969 prophage LambdaSo, holin, putative; HNH endonuclease complement(2860860..2861189) Shewanella sp. W3-18-1 4660216 YP_963864.1 CDS Sputw3181_2486 NC_008750.1 2861186 2861575 R KEGG: son:SO2970 hypothetical protein; hypothetical protein complement(2861186..2861575) Shewanella sp. W3-18-1 4660921 YP_963865.1 CDS Sputw3181_2487 NC_008750.1 2861568 2861837 R KEGG: son:SO2971 hypothetical protein; hypothetical protein complement(2861568..2861837) Shewanella sp. W3-18-1 4660982 YP_963866.1 CDS Sputw3181_2488 NC_008750.1 2861954 2862478 R KEGG: son:SO2972 hypothetical protein; hypothetical protein complement(2861954..2862478) Shewanella sp. W3-18-1 4660441 YP_963867.1 CDS Sputw3181_2489 NC_008750.1 2862728 2863240 R KEGG: son:SO2973 prophage LambdaSo, lysozyme, putative; prophage LambdaSo, lysozyme complement(2862728..2863240) Shewanella sp. W3-18-1 4660240 YP_963868.1 CDS Sputw3181_2490 NC_008750.1 2863243 2863503 R KEGG: shm:Shewmr7_0731 hypothetical protein; hypothetical protein complement(2863243..2863503) Shewanella sp. W3-18-1 4660244 YP_963869.1 CDS Sputw3181_2491 NC_008750.1 2863599 2864189 R hypothetical protein complement(2863599..2864189) Shewanella sp. W3-18-1 4659815 YP_963870.1 CDS Sputw3181_2492 NC_008750.1 2864248 2864571 R KEGG: son:SO2976 hypothetical protein; hypothetical protein complement(2864248..2864571) Shewanella sp. W3-18-1 4660217 YP_963871.1 CDS Sputw3181_2493 NC_008750.1 2865005 2865328 R hypothetical protein complement(2865005..2865328) Shewanella sp. W3-18-1 4660207 YP_963872.1 CDS Sputw3181_2494 NC_008750.1 2865328 2865570 R hypothetical protein complement(2865328..2865570) Shewanella sp. W3-18-1 4660210 YP_963873.1 CDS Sputw3181_2495 NC_008750.1 2865850 2867049 R PFAM: phage integrase family protein; KEGG: son:SO2978 prophage LambdaSo, site-specific recombinase, phage integrase family; phage integrase family protein complement(2865850..2867049) Shewanella sp. W3-18-1 4660521 YP_963874.1 CDS Sputw3181_2496 NC_008750.1 2867049 2867648 R KEGG: son:SO2979 hypothetical protein; hypothetical protein complement(2867049..2867648) Shewanella sp. W3-18-1 4660649 YP_963875.1 CDS Sputw3181_2497 NC_008750.1 2867648 2868217 R TIGRFAM: uncharacterized phage protein; KEGG: son:SO2980 hypothetical protein; phage protein complement(2867648..2868217) Shewanella sp. W3-18-1 4660695 YP_963876.1 CDS Sputw3181_2498 NC_008750.1 2868214 2868645 R KEGG: son:SO2981 hypothetical protein; hypothetical protein complement(2868214..2868645) Shewanella sp. W3-18-1 4660731 YP_963877.1 CDS Sputw3181_2499 NC_008750.1 2868645 2869151 R KEGG: son:SO2982 hypothetical protein; hypothetical protein complement(2868645..2869151) Shewanella sp. W3-18-1 4660782 YP_963878.1 CDS Sputw3181_2500 NC_008750.1 2869148 2869540 R KEGG: son:SO2983 hypothetical protein; hypothetical protein complement(2869148..2869540) Shewanella sp. W3-18-1 4660810 YP_963879.1 CDS Sputw3181_2501 NC_008750.1 2869524 2870084 R KEGG: son:SO2984 hypothetical protein; hypothetical protein complement(2869524..2870084) Shewanella sp. W3-18-1 4660415 YP_963880.1 CDS Sputw3181_2502 NC_008750.1 2870056 2871123 R TIGRFAM: phage replication protein O; PFAM: phage replication protein O domain protein; KEGG: son:SO2985 prophage LambdaSo, replication protein O; phage replication protein O complement(2870056..2871123) Shewanella sp. W3-18-1 4660873 YP_963881.1 CDS Sputw3181_2503 NC_008750.1 2871180 2871437 R KEGG: son:SO2986 hypothetical protein; hypothetical protein complement(2871180..2871437) Shewanella sp. W3-18-1 4660276 YP_963882.1 CDS Sputw3181_2504 NC_008750.1 2871437 2871631 R KEGG: son:SO2987 hypothetical protein; hypothetical protein complement(2871437..2871631) Shewanella sp. W3-18-1 4660971 YP_963883.1 CDS Sputw3181_2505 NC_008750.1 2871624 2872205 R KEGG: son:SO2988 hypothetical protein; hypothetical protein complement(2871624..2872205) Shewanella sp. W3-18-1 4661021 YP_963884.1 CDS Sputw3181_2506 NC_008750.1 2872239 2872538 R PFAM: helix-turn-helix domain protein; KEGG: son:SO2989 prophage LambdaSo, transcriptional regulator, Cro/CI family; XRE family transcriptional regulator complement(2872239..2872538) Shewanella sp. W3-18-1 4661853 YP_963885.1 CDS Sputw3181_2507 NC_008750.1 2872587 2873246 D PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; KEGG: pst:PSPTO_0571 repressor protein C2; putative prophage repressor 2872587..2873246 Shewanella sp. W3-18-1 4661685 YP_963886.1 CDS Sputw3181_2508 NC_008750.1 2873281 2873703 D KEGG: son:SO2991 hypothetical protein; hypothetical protein 2873281..2873703 Shewanella sp. W3-18-1 4661589 YP_963887.1 CDS Sputw3181_2509 NC_008750.1 2873716 2874612 D KEGG: sth:STH1713 ATP-dependent DNA helicase; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2873716..2874612 Shewanella sp. W3-18-1 4661563 YP_963888.1 CDS Sputw3181_2510 NC_008750.1 2874672 2875388 R PFAM: bacteriophage lambda tail assembly I; KEGG: son:SO2941 prophage LambdaSo, tail assembly protein I; bacteriophage lambda tail assembly I complement(2874672..2875388) Shewanella sp. W3-18-1 4661559 YP_963889.1 CDS Sputw3181_2511 NC_008750.1 2876609 2876848 D hypothetical protein 2876609..2876848 Shewanella sp. W3-18-1 4661464 YP_963890.1 CDS Sputw3181_2512 NC_008750.1 2876989 2877414 D KEGG: son:SO2997 hypothetical protein; hypothetical protein 2876989..2877414 Shewanella sp. W3-18-1 4661411 YP_963891.1 CDS Sputw3181_2513 NC_008750.1 2877407 2877685 D KEGG: son:SO2998 hypothetical protein; hypothetical protein 2877407..2877685 Shewanella sp. W3-18-1 4661353 YP_963892.1 CDS Sputw3181_2514 NC_008750.1 2877773 2878177 D KEGG: sdn:Sden_3274 hypothetical protein; hypothetical protein 2877773..2878177 Shewanella sp. W3-18-1 4660409 YP_963893.1 CDS Sputw3181_2515 NC_008750.1 2878174 2878698 D KEGG: ecs:ECs4955 hypothetical protein; hypothetical protein 2878174..2878698 Shewanella sp. W3-18-1 4660751 YP_963894.1 CDS Sputw3181_2516 NC_008750.1 2878695 2879237 D hypothetical protein 2878695..2879237 Shewanella sp. W3-18-1 4660404 YP_963895.1 CDS Sputw3181_2517 NC_008750.1 2879231 2879395 D KEGG: son:SO2999 hypothetical protein; hypothetical protein 2879231..2879395 Shewanella sp. W3-18-1 4661346 YP_963896.1 CDS Sputw3181_2518 NC_008750.1 2879405 2879989 D KEGG: son:SO3000 hypothetical protein; hypothetical protein 2879405..2879989 Shewanella sp. W3-18-1 4660377 YP_963897.1 CDS Sputw3181_2519 NC_008750.1 2879986 2880705 D KEGG: psb:Psyr_2841 hypothetical protein; hypothetical protein 2879986..2880705 Shewanella sp. W3-18-1 4660574 YP_963898.1 CDS Sputw3181_2520 NC_008750.1 2880702 2881025 D KEGG: son:SO3003 hypothetical protein; hypothetical protein 2880702..2881025 Shewanella sp. W3-18-1 4660349 YP_963899.1 CDS Sputw3181_2521 NC_008750.1 2881022 2881381 D hypothetical protein 2881022..2881381 Shewanella sp. W3-18-1 4660333 YP_963900.1 CDS Sputw3181_2522 NC_008750.1 2881383 2882267 D PFAM: DNA N-6-adenine-methyltransferase; KEGG: eci:UTI89_C1294 putative DNA N-6-adenine-methyltransferase of bacteriophage; DNA N-6-adenine-methyltransferase 2881383..2882267 Shewanella sp. W3-18-1 4660898 YP_963901.1 CDS Sputw3181_2523 NC_008750.1 2882255 2883925 D PFAM: C-5 cytosine-specific DNA methylase; KEGG: son:SO3006 prophage LambdaSo, type II DNA modification methyltransferase, putative; C-5 cytosine-specific DNA methylase 2882255..2883925 Shewanella sp. W3-18-1 4661095 YP_963902.1 CDS Sputw3181_2524 NC_008750.1 2883934 2884170 D KEGG: bce:BC1874 phage protein; phage protein 2883934..2884170 Shewanella sp. W3-18-1 4660213 YP_963903.1 CDS Sputw3181_2525 NC_008750.1 2884163 2884954 D KEGG: pat:Patl_0687 hypothetical protein; hypothetical protein 2884163..2884954 Shewanella sp. W3-18-1 4660241 YP_963904.1 CDS Sputw3181_2526 NC_008750.1 2884951 2885076 D KEGG: son:SO3007 hypothetical protein; hypothetical protein 2884951..2885076 Shewanella sp. W3-18-1 4660281 YP_963905.1 CDS Sputw3181_2527 NC_008750.1 2885073 2885348 D hypothetical protein 2885073..2885348 Shewanella sp. W3-18-1 4660298 YP_963906.1 CDS Sputw3181_2528 NC_008750.1 2885348 2885932 D KEGG: pst:PSPTO_3428 hypothetical protein; hypothetical protein 2885348..2885932 Shewanella sp. W3-18-1 4660310 YP_963907.1 CDS Sputw3181_2529 NC_008750.1 2886120 2887328 R PFAM: phage integrase family protein; KEGG: sfr:Sfri_1639 phage integrase family protein; phage integrase family protein complement(2886120..2887328) Shewanella sp. W3-18-1 4659830 YP_963908.1 CDS sbcB NC_008750.1 2887506 2888924 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2887506..2888924 Shewanella sp. W3-18-1 4660026 YP_963909.1 CDS Sputw3181_2531 NC_008750.1 2889090 2889980 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2889090..2889980 Shewanella sp. W3-18-1 4659819 YP_963910.1 CDS Sputw3181_2532 NC_008750.1 2890020 2890232 R PFAM: protein of unknown function DUF1289; KEGG: son:SO2792 hypothetical protein; hypothetical protein complement(2890020..2890232) Shewanella sp. W3-18-1 4659973 YP_963911.1 CDS Sputw3181_2533 NC_008750.1 2890207 2890557 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: she:Shewmr4_2413 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(2890207..2890557) Shewanella sp. W3-18-1 4659809 YP_963912.1 CDS Sputw3181_2534 NC_008750.1 2890659 2891363 R KEGG: she:Shewmr4_2414 hypothetical protein; hypothetical protein complement(2890659..2891363) Shewanella sp. W3-18-1 4660992 YP_963913.1 CDS Sputw3181_2535 NC_008750.1 2891735 2892115 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2795 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 2891735..2892115 Shewanella sp. W3-18-1 4659691 YP_963914.1 CDS Sputw3181_2536 NC_008750.1 2892351 2895614 D PFAM: protein of unknown function DUF748; KEGG: she:Shewmr4_2416 protein of unknown function DUF748; hypothetical protein 2892351..2895614 Shewanella sp. W3-18-1 4659756 YP_963915.1 CDS Sputw3181_2537 NC_008750.1 2895905 2896261 D PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: shm:Shewmr7_2487 glutaredoxin; glutaredoxin 2895905..2896261 Shewanella sp. W3-18-1 4659371 YP_963916.1 CDS Sputw3181_2538 NC_008750.1 2896319 2897008 R KEGG: she:Shewmr4_2418 hypothetical protein; hypothetical protein complement(2896319..2897008) Shewanella sp. W3-18-1 4659109 YP_963917.1 CDS Sputw3181_2539 NC_008750.1 2897159 2897623 D KEGG: son:SO2799 lipoprotein, putative; putative lipoprotein 2897159..2897623 Shewanella sp. W3-18-1 4659313 YP_963918.1 CDS Sputw3181_2540 NC_008750.1 2897684 2897863 R PFAM: protein of unknown function DUF343; KEGG: son:SO2800 hypothetical protein; hypothetical protein complement(2897684..2897863) Shewanella sp. W3-18-1 4661783 YP_963919.1 CDS lpxK NC_008750.1 2897850 2898863 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(2897850..2898863) Shewanella sp. W3-18-1 4660986 YP_963920.1 CDS Sputw3181_2542 NC_008750.1 2898864 2900672 R KEGG: son:SO2802 ABC transporter, ATP-binding protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA complement(2898864..2900672) Shewanella sp. W3-18-1 4658969 YP_963921.1 CDS Sputw3181_2543 NC_008750.1 2900705 2903029 R TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: shm:Shewmr7_2493 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 complement(2900705..2903029) Shewanella sp. W3-18-1 4659017 YP_963922.1 CDS Sputw3181_2544 NC_008750.1 2903061 2903570 D KEGG: shm:Shewmr7_2494 hypothetical protein; hypothetical protein 2903061..2903570 Shewanella sp. W3-18-1 4661008 YP_963923.1 CDS Sputw3181_2545 NC_008750.1 2903854 2904258 D PFAM: phosphate-starvation-inducible E; KEGG: shm:Shewmr7_2496 phosphate-starvation-inducible E; phosphate-starvation-inducible E 2903854..2904258 Shewanella sp. W3-18-1 4658574 YP_963924.1 CDS Sputw3181_2546 NC_008750.1 2904413 2904715 D PFAM: type IV pilus assembly PilZ; KEGG: shm:Shewmr7_2497 type IV pilus assembly PilZ; type IV pilus assembly PilZ 2904413..2904715 Shewanella sp. W3-18-1 4658573 YP_963925.1 CDS Sputw3181_2547 NC_008750.1 2904793 2905461 D KEGG: son:SO2808 hypothetical protein; hypothetical protein 2904793..2905461 Shewanella sp. W3-18-1 4658338 YP_963926.1 CDS Sputw3181_2548 NC_008750.1 2905448 2905789 D KEGG: shm:Shewmr7_2499 RepA domain protein; RepA domain-containing protein 2905448..2905789 Shewanella sp. W3-18-1 4658538 YP_963927.1 CDS Sputw3181_2549 NC_008750.1 2905874 2906116 R KEGG: shm:Shewmr7_2500 hypothetical protein; hypothetical protein complement(2905874..2906116) Shewanella sp. W3-18-1 4658376 YP_963928.1 CDS Sputw3181_2550 NC_008750.1 2906245 2907927 D PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: son:SO2822 sensor histidine kinase; signal transduction histidine kinase LytS 2906245..2907927 Shewanella sp. W3-18-1 4658435 YP_963929.1 CDS Sputw3181_2551 NC_008750.1 2907924 2908634 D unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT 2907924..2908634 Shewanella sp. W3-18-1 4661128 YP_963930.1 CDS Sputw3181_2552 NC_008750.1 2908797 2910245 D PFAM: carbon starvation protein CstA; KEGG: she:Shewmr4_2433 carbon starvation protein CstA; carbon starvation protein CstA 2908797..2910245 Shewanella sp. W3-18-1 4658461 YP_963931.1 CDS Sputw3181_2553 NC_008750.1 2910384 2910752 D KEGG: she:Shewmr4_2434 hypothetical protein; hypothetical protein 2910384..2910752 Shewanella sp. W3-18-1 4658649 YP_963932.1 CDS Sputw3181_2554 NC_008750.1 2910905 2911357 D KEGG: son:SO2829 hypothetical protein; hypothetical protein 2910905..2911357 Shewanella sp. W3-18-1 4658531 YP_963933.1 CDS Sputw3181_2555 NC_008750.1 2911452 2912318 R KEGG: son:SO2830 hypothetical protein; hypothetical protein complement(2911452..2912318) Shewanella sp. W3-18-1 4660981 YP_963934.1 CDS ribA NC_008750.1 2912415 2913026 R catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II complement(2912415..2913026) Shewanella sp. W3-18-1 4658002 YP_963935.1 CDS Sputw3181_2557 NC_008750.1 2913282 2913638 R KEGG: she:Shewmr4_2439 hypothetical protein; hypothetical protein complement(2913282..2913638) Shewanella sp. W3-18-1 4660938 YP_963936.1 CDS nrdG NC_008750.1 2913753 2914214 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein complement(2913753..2914214) Shewanella sp. W3-18-1 4657684 YP_963937.1 CDS Sputw3181_2559 NC_008750.1 2914330 2916447 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(2914330..2916447) Shewanella sp. W3-18-1 4657905 YP_963938.1 CDS Sputw3181_2560 NC_008750.1 2916715 2917404 R KEGG: shm:Shewmr7_2512 hypothetical protein; hypothetical protein complement(2916715..2917404) Shewanella sp. W3-18-1 4657818 YP_963939.1 CDS Sputw3181_2561 NC_008750.1 2917491 2918453 R PFAM: Patatin; KEGG: son:SO2836 hypothetical protein; patatin complement(2917491..2918453) Shewanella sp. W3-18-1 4661855 YP_963940.1 CDS Sputw3181_2562 NC_008750.1 2918700 2920049 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: she:Shewmr4_2444 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 2918700..2920049 Shewanella sp. W3-18-1 4657766 YP_963941.1 CDS Sputw3181_2563 NC_008750.1 2920189 2920626 D KEGG: son:SO2839 hypothetical protein; hypothetical protein 2920189..2920626 Shewanella sp. W3-18-1 4657763 YP_963942.1 CDS Sputw3181_2564 NC_008750.1 2920668 2921177 D PFAM: protein of unknown function DUF45; KEGG: son:SO2840 hypothetical protein; hypothetical protein 2920668..2921177 Shewanella sp. W3-18-1 4657774 YP_963943.1 CDS Sputw3181_2565 NC_008750.1 2921275 2921745 D KEGG: son:SO2841 hypothetical protein; hypothetical protein 2921275..2921745 Shewanella sp. W3-18-1 4657773 YP_963944.1 CDS Sputw3181_2566 NC_008750.1 2922070 2923365 R PFAM: peptidase M23B; Opacity-associated protein A; KEGG: shm:Shewmr7_2518 peptidase M23B; peptidase M23B complement(2922070..2923365) Shewanella sp. W3-18-1 4657809 YP_963945.1 CDS Sputw3181_2567 NC_008750.1 2923631 2926687 R PFAM: SMC domain protein; KEGG: she:Shewmr4_2449 SMC domain protein; SMC domain-containing protein complement(2923631..2926687) Shewanella sp. W3-18-1 4657845 YP_963946.1 CDS Sputw3181_2568 NC_008750.1 2926684 2927829 R TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: shm:Shewmr7_2520 nuclease SbcCD, D subunit; nuclease SbcCD subunit D complement(2926684..2927829) Shewanella sp. W3-18-1 4657851 YP_963947.1 CDS Sputw3181_2569 NC_008750.1 2928212 2928985 R PFAM: protein of unknown function DUF81; KEGG: son:SO2846 hypothetical protein; hypothetical protein complement(2928212..2928985) Shewanella sp. W3-18-1 4657887 YP_963948.1 CDS Sputw3181_2570 NC_008750.1 2929143 2930048 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2522 transcriptional regulator, LysR family; LysR family transcriptional regulator 2929143..2930048 Shewanella sp. W3-18-1 4657999 YP_963949.1 CDS Sputw3181_2571 NC_008750.1 2930200 2931810 D KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 2930200..2931810 Shewanella sp. W3-18-1 4658072 YP_963950.1 CDS Sputw3181_2572 NC_008750.1 2932010 2932399 R PFAM: protein of unknown function DUF1260; KEGG: son:SO1836 hypothetical protein; hypothetical protein complement(2932010..2932399) Shewanella sp. W3-18-1 4658207 YP_963951.1 CDS Sputw3181_2573 NC_008750.1 2932422 2932661 R KEGG: shm:Shewmr7_2524 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein complement(2932422..2932661) Shewanella sp. W3-18-1 4658210 YP_963952.1 CDS Sputw3181_2574 NC_008750.1 2932816 2933352 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1834 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(2932816..2933352) Shewanella sp. W3-18-1 4658211 YP_963953.1 CDS Sputw3181_2575 NC_008750.1 2933420 2933698 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: shm:Shewmr7_2526 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2933420..2933698) Shewanella sp. W3-18-1 4658214 YP_963954.1 CDS Sputw3181_2576 NC_008750.1 2933877 2935706 R PFAM: protein of unknown function DUF885; KEGG: she:Shewmr4_2457 protein of unknown function DUF885; hypothetical protein complement(2933877..2935706) Shewanella sp. W3-18-1 4658218 YP_963955.1 CDS Sputw3181_2577 NC_008750.1 2935786 2936295 D PFAM: GGDEF domain containing protein; KEGG: son:SO1830 GGDEF domain protein; diguanylate cyclase 2935786..2936295 Shewanella sp. W3-18-1 4658222 YP_963956.1 CDS Sputw3181_2578 NC_008750.1 2936363 2937607 R PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_2529 TPR repeat-containing protein; hypothetical protein complement(2936363..2937607) Shewanella sp. W3-18-1 4657744 YP_963957.1 CDS Sputw3181_2579 NC_008750.1 2937610 2938230 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: shm:Shewmr7_2530 TonB family protein; TonB family protein complement(2937610..2938230) Shewanella sp. W3-18-1 4658236 YP_963958.1 CDS Sputw3181_2580 NC_008750.1 2938232 2938636 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: shm:Shewmr7_2531 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(2938232..2938636) Shewanella sp. W3-18-1 4658237 YP_963959.1 CDS Sputw3181_2581 NC_008750.1 2938650 2939177 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: she:Shewmr4_2462 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(2938650..2939177) Shewanella sp. W3-18-1 4658242 YP_963960.1 CDS Sputw3181_2582 NC_008750.1 2939177 2940532 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: shm:Shewmr7_2533 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(2939177..2940532) Shewanella sp. W3-18-1 4658248 YP_963961.1 CDS Sputw3181_2583 NC_008750.1 2940532 2941314 R KEGG: shm:Shewmr7_2534 hypothetical protein; hypothetical protein complement(2940532..2941314) Shewanella sp. W3-18-1 4658249 YP_963962.1 CDS Sputw3181_2584 NC_008750.1 2941789 2944602 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAb0158 putative TonB-dependent receptor with TonB-box; TonB-dependent receptor complement(2941789..2944602) Shewanella sp. W3-18-1 4658250 YP_963963.1 CDS Sputw3181_2585 NC_008750.1 2945370 2946578 R PFAM: porin, Gram-negative type; KEGG: she:Shewmr4_2468 porin, gram-negative type; porin complement(2945370..2946578) Shewanella sp. W3-18-1 4657748 YP_963964.1 CDS Sputw3181_2586 NC_008750.1 2946799 2949192 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II complement(2946799..2949192) Shewanella sp. W3-18-1 4658251 YP_963965.1 CDS dinG NC_008750.1 2949292 2951364 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 2949292..2951364 Shewanella sp. W3-18-1 4658252 YP_963966.1 CDS Sputw3181_2588 NC_008750.1 2951374 2952147 D PFAM: protein of unknown function DUF81; KEGG: shm:Shewmr7_2539 protein of unknown function DUF81; hypothetical protein 2951374..2952147 Shewanella sp. W3-18-1 4658254 YP_963967.1 CDS Sputw3181_2589 NC_008750.1 2952138 2952806 D KEGG: she:Shewmr4_2472 primosomal replication protein N'', putative; primosomal replication protein N'' 2952138..2952806 Shewanella sp. W3-18-1 4658257 YP_963968.1 CDS Sputw3181_2590 NC_008750.1 2952816 2953520 D KEGG: she:Shewmr4_2473 hypothetical protein; hypothetical protein 2952816..2953520 Shewanella sp. W3-18-1 4658261 YP_963969.1 CDS Sputw3181_2592 NC_008750.1 2953819 2954109 D KEGG: son:SO1814 hypothetical protein; hypothetical protein 2953819..2954109 Shewanella sp. W3-18-1 4659905 YP_963970.1 CDS Sputw3181_2593 NC_008750.1 2954539 2954922 R KEGG: shm:Shewmr7_2544 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1; helix-hairpin-helix repeat-containing competence protein ComEA complement(2954539..2954922) Shewanella sp. W3-18-1 4659859 YP_963971.1 CDS Sputw3181_2594 NC_008750.1 2955148 2956341 R KEGG: she:Shewmr4_2477 methionine gamma-lyase; TIGRFAM: methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; methionine gamma-lyase complement(2955148..2956341) Shewanella sp. W3-18-1 4658286 YP_963972.1 CDS Sputw3181_2595 NC_008750.1 2956684 2957916 R PFAM: conserved hypothetical protein 1620; KEGG: she:Shewmr4_2478 conserved hypothetical protein 1620; hypothetical protein complement(2956684..2957916) Shewanella sp. W3-18-1 4658295 YP_963973.1 CDS Sputw3181_2596 NC_008750.1 2957913 2959385 R PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: she:Shewmr4_2479 protein of unknown function DUF463, YcjX family protein; hypothetical protein complement(2957913..2959385) Shewanella sp. W3-18-1 4658303 YP_963974.1 CDS Sputw3181_2597 NC_008750.1 2959467 2959853 R PFAM: PspC domain protein; KEGG: shm:Shewmr7_2548 phage shock protein C, PspC; phage shock protein C, PspC complement(2959467..2959853) Shewanella sp. W3-18-1 4658304 YP_963975.1 CDS pspB NC_008750.1 2959840 2960073 R acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B complement(2959840..2960073) Shewanella sp. W3-18-1 4658310 YP_963976.1 CDS Sputw3181_2599 NC_008750.1 2960097 2960780 R PFAM: PspA/IM30 family protein; KEGG: son:SO1807 phage shock protein A; phage shock protein A, PspA complement(2960097..2960780) Shewanella sp. W3-18-1 4658319 YP_963977.1 CDS Sputw3181_2600 NC_008750.1 2960958 2962046 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_2551 transcriptional regulator, fis family; Fis family transcriptional regulator 2960958..2962046 Shewanella sp. W3-18-1 4658325 YP_963978.1 CDS Sputw3181_2601 NC_008750.1 2962116 2963741 D PFAM: extracellular solute-binding protein, family 5; KEGG: shm:Shewmr7_2552 extracellular solute-binding protein, family 5; extracellular solute-binding protein 2962116..2963741 Shewanella sp. W3-18-1 4658327 YP_963979.1 CDS Sputw3181_2602 NC_008750.1 2963741 2964772 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: she:Shewmr4_2485 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2963741..2964772 Shewanella sp. W3-18-1 4658331 YP_963980.1 CDS Sputw3181_2603 NC_008750.1 2964759 2965649 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2554 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2964759..2965649 Shewanella sp. W3-18-1 4658694 YP_963981.1 CDS Sputw3181_2604 NC_008750.1 2965653 2966660 D TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; KEGG: shm:Shewmr7_2555 oligopeptide/dipeptide ABC transporter, ATPase subunit; oligopeptide/dipeptide ABC transporter ATPase 2965653..2966660 Shewanella sp. W3-18-1 4658413 YP_963982.1 CDS Sputw3181_2605 NC_008750.1 2966641 2967426 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein; ABC transporter-like protein 2966641..2967426 Shewanella sp. W3-18-1 4658367 YP_963983.1 CDS Sputw3181_2606 NC_008750.1 2967532 2968737 D enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 2967532..2968737 Shewanella sp. W3-18-1 4658870 YP_963984.1 CDS Sputw3181_2607 NC_008750.1 2969330 2971186 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: she:Shewmr4_2491 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2969330..2971186) Shewanella sp. W3-18-1 4658879 YP_963985.1 CDS Sputw3181_2608 NC_008750.1 2971414 2971686 R PFAM: histone family protein DNA-binding protein; KEGG: shm:Shewmr7_2560 histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(2971414..2971686) Shewanella sp. W3-18-1 4658881 YP_963986.1 CDS Sputw3181_2609 NC_008750.1 2971946 2974303 R KEGG: shm:Shewmr7_2561 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La complement(2971946..2974303) Shewanella sp. W3-18-1 4658886 YP_963987.1 CDS clpX NC_008750.1 2974436 2975716 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(2974436..2975716) Shewanella sp. W3-18-1 4658889 YP_963988.1 CDS clpP NC_008750.1 2975802 2976410 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(2975802..2976410) Shewanella sp. W3-18-1 4658887 YP_963989.1 CDS tig NC_008750.1 2976500 2977804 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(2976500..2977804) Shewanella sp. W3-18-1 4658898 YP_963990.1 CDS Sputw3181_2613 NC_008750.1 2978781 2979635 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2978781..2979635 Shewanella sp. W3-18-1 4659375 YP_963991.1 CDS cysS NC_008750.1 2979821 2981206 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(2979821..2981206) Shewanella sp. W3-18-1 4658618 YP_963992.1 CDS Sputw3181_2615 NC_008750.1 2981341 2981835 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO1790 peptidyl-prolyl cis-trans isomerase B; cyclophilin type peptidyl-prolyl cis-trans isomerase 2981341..2981835 Shewanella sp. W3-18-1 4658918 YP_963993.1 CDS Sputw3181_2616 NC_008750.1 2981845 2982570 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 2981845..2982570 Shewanella sp. W3-18-1 4658919 YP_963994.1 CDS Sputw3181_2617 NC_008750.1 2982641 2983450 R PFAM: tRNA--hydroxylase; KEGG: she:Shewmr4_2501 tRNA--hydroxylase; tRNA--hydroxylase complement(2982641..2983450) Shewanella sp. W3-18-1 4658924 YP_963995.1 CDS Sputw3181_2618 NC_008750.1 2983688 2984284 D PFAM: protein of unknown function DUF1282; KEGG: she:Shewmr4_2502 protein of unknown function DUF1282; hypothetical protein 2983688..2984284 Shewanella sp. W3-18-1 4658927 YP_963996.1 CDS Sputw3181_2619 NC_008750.1 2984384 2986054 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(2984384..2986054) Shewanella sp. W3-18-1 4658932 YP_963997.1 CDS Sputw3181_2620 NC_008750.1 2986245 2988539 R TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; Miro domain protein; KEGG: son:SO1784 ferrous iron transport protein B; ferrous iron transport protein B complement(2986245..2988539) Shewanella sp. W3-18-1 4658933 YP_963998.1 CDS Sputw3181_2621 NC_008750.1 2988532 2988771 R PFAM: FeoA family protein; KEGG: shm:Shewmr7_2573 FeoA family protein; FeoA family protein complement(2988532..2988771) Shewanella sp. W3-18-1 4658934 YP_963999.1 CDS Sputw3181_2622 NC_008750.1 2989610 2992111 D KEGG: son:SO1779 decaheme cytochrome c; hypothetical protein 2989610..2992111 Shewanella sp. W3-18-1 4658944 YP_964000.1 CDS Sputw3181_2623 NC_008750.1 2992502 2994466 D KEGG: shm:Shewmr7_2578 decaheme cytochrome c; decaheme cytochrome c 2992502..2994466 Shewanella sp. W3-18-1 4658950 YP_964001.1 CDS Sputw3181_2624 NC_008750.1 2994536 2995537 D TIGRFAM: cytochrome C family protein; KEGG: son:SO1777 decaheme cytochrome c MtrA; cytochrome C family protein 2994536..2995537 Shewanella sp. W3-18-1 4659655 YP_964002.1 CDS Sputw3181_2625 NC_008750.1 2995550 2997637 D KEGG: she:Shewmr4_2512 outer membrane protein precursor MtrB; outer membrane protein MtrB 2995550..2997637 Shewanella sp. W3-18-1 4659168 YP_964003.1 CDS Sputw3181_2626 NC_008750.1 2997822 2998427 D KEGG: she:Shewmr4_2513 hypothetical protein; hypothetical protein 2997822..2998427 Shewanella sp. W3-18-1 4659011 YP_964004.1 CDS Sputw3181_2627 NC_008750.1 2998460 2999146 D KEGG: shm:Shewmr7_2582 phage SPO1 DNA polymerase domain protein; phage SPO1 DNA polymerase domain-containing protein 2998460..2999146 Shewanella sp. W3-18-1 4659084 YP_964005.1 CDS Sputw3181_2628 NC_008750.1 2999155 3000396 D PFAM: sugar diacid recognition domain protein; KEGG: shm:Shewmr7_2584 transcriptional regulator, CdaR; transcriptional regulator CdaR 2999155..3000396 Shewanella sp. W3-18-1 4659297 YP_964006.1 CDS Sputw3181_2629 NC_008750.1 3000521 3001528 D PFAM: Catalase domain protein; KEGG: she:Shewmr4_2517 catalase domain protein; catalase domain-containing protein 3000521..3001528 Shewanella sp. W3-18-1 4659448 YP_964007.1 CDS Sputw3181_2630 NC_008750.1 3001824 3003182 D PFAM: Gluconate transporter; Citrate transporter; KEGG: shm:Shewmr7_2586 gluconate transporter; gluconate transporter 3001824..3003182 Shewanella sp. W3-18-1 4659455 YP_964008.1 CDS Sputw3181_2631 NC_008750.1 3003242 3004426 D PFAM: glycerate kinase; KEGG: shm:Shewmr7_2587 glycerate kinase; glycerate kinase 3003242..3004426 Shewanella sp. W3-18-1 4659456 YP_964009.1 CDS Sputw3181_2632 NC_008750.1 3004660 3006309 D PFAM: Pyridoxal-dependent decarboxylase; KEGG: she:Shewmr4_2520 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase 3004660..3006309 Shewanella sp. W3-18-1 4659458 YP_964010.1 CDS Sputw3181_2633 NC_008750.1 3006796 3007446 D PFAM: transposase, mutator type; KEGG: son:SO4497 ISSod5, transposase; transposase, mutator type 3006796..3007446 Shewanella sp. W3-18-1 4659468 YP_964011.1 CDS Sputw3181_2634 NC_008750.1 3007400 3007678 D KEGG: she:Shewmr4_1779 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 3007400..3007678 Shewanella sp. W3-18-1 4659473 YP_964012.1 CDS Sputw3181_2635 NC_008750.1 3008348 3008722 D KEGG: she:Shewmr4_2525 hypothetical protein; hypothetical protein 3008348..3008722 Shewanella sp. W3-18-1 4659475 YP_964013.1 CDS Sputw3181_2636 NC_008750.1 3008868 3009323 D hypothetical protein 3008868..3009323 Shewanella sp. W3-18-1 4659476 YP_964014.1 CDS Sputw3181_2637 NC_008750.1 3010000 3011016 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_1779 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein complement(3010000..3011016) Shewanella sp. W3-18-1 4659481 YP_964015.1 CDS Sputw3181_2638 NC_008750.1 3011550 3012509 R KEGG: cps:CPS_2655 hypothetical protein; hypothetical protein complement(3011550..3012509) Shewanella sp. W3-18-1 4659482 YP_964016.1 CDS Sputw3181_2639 NC_008750.1 3012667 3013026 D KEGG: son:SO1765 hypothetical protein; hypothetical protein 3012667..3013026 Shewanella sp. W3-18-1 4659483 YP_964017.1 CDS Sputw3181_2640 NC_008750.1 3013084 3013599 D PFAM: protein of unknown function DUF1706; KEGG: son:SO1764 hypothetical protein; hypothetical protein 3013084..3013599 Shewanella sp. W3-18-1 4659485 YP_964018.1 CDS Sputw3181_2641 NC_008750.1 3013630 3014286 D PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO1763 streptogramin A acetyl transferase; hexapaptide repeat-containing transferase 3013630..3014286 Shewanella sp. W3-18-1 4659486 YP_964019.1 CDS Sputw3181_2642 NC_008750.1 3014475 3015311 D PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO1762 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 3014475..3015311 Shewanella sp. W3-18-1 4659489 YP_964020.1 CDS Sputw3181_2643 NC_008750.1 3015440 3016321 D PFAM: AzlC family protein; KEGG: she:Shewmr4_2528 AzlC family protein; AzlC family protein 3015440..3016321 Shewanella sp. W3-18-1 4659143 YP_964021.1 CDS Sputw3181_2644 NC_008750.1 3016318 3016620 D PFAM: branched-chain amino acid transport; KEGG: son:SO1759 hypothetical protein; branched-chain amino acid transport 3016318..3016620 Shewanella sp. W3-18-1 4659497 YP_964022.1 CDS Sputw3181_2645 NC_008750.1 3016600 3017277 R PFAM: Helix-turn-helix, type 11 domain protein; KEGG: she:Shewmr4_2538 helix-turn-helix, type 11 domain protein; helix-turn-helix, type 11 domain-containing protein complement(3016600..3017277) Shewanella sp. W3-18-1 4659147 YP_964023.1 CDS Sputw3181_2646 NC_008750.1 3017330 3017794 R PFAM: transcription activator, effector binding; KEGG: son:SO1757 hypothetical protein; transcription activator, effector binding complement(3017330..3017794) Shewanella sp. W3-18-1 4659500 YP_964024.1 CDS Sputw3181_2647 NC_008750.1 3017881 3018264 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: shm:Shewmr7_2607 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3017881..3018264) Shewanella sp. W3-18-1 4659509 YP_964025.1 CDS Sputw3181_2648 NC_008750.1 3018439 3020160 R PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: she:Shewmr4_2541 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/subunit complement(3018439..3020160) Shewanella sp. W3-18-1 4659514 YP_964026.1 CDS Sputw3181_2649 NC_008750.1 3020252 3021238 R PFAM: Integral membrane protein TerC; KEGG: son:SO1747 membrane protein, putative; integral membrane protein TerC complement(3020252..3021238) Shewanella sp. W3-18-1 4659523 YP_964027.1 CDS Sputw3181_2650 NC_008750.1 3021534 3021767 R KEGG: shm:Shewmr7_2611 hypothetical protein; hypothetical protein complement(3021534..3021767) Shewanella sp. W3-18-1 4659536 YP_964028.1 CDS Sputw3181_2651 NC_008750.1 3021838 3022965 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: shm:Shewmr7_2612 3-beta hydroxysteroid dehydrogenase/isomerase; 3-beta hydroxysteroid dehydrogenase/isomerase complement(3021838..3022965) Shewanella sp. W3-18-1 4659541 YP_964029.1 CDS Sputw3181_2652 NC_008750.1 3023115 3024941 R Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase complement(3023115..3024941) Shewanella sp. W3-18-1 4659154 YP_964030.1 CDS Sputw3181_2653 NC_008750.1 3024941 3025852 R PFAM: alpha/beta hydrolase fold; KEGG: son:SO1743 hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold domain-containing protein complement(3024941..3025852) Shewanella sp. W3-18-1 4659544 YP_964031.1 CDS Sputw3181_2654 NC_008750.1 3025949 3026998 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(3025949..3026998) Shewanella sp. W3-18-1 4659648 YP_964032.1 CDS Sputw3181_2655 NC_008750.1 3027251 3028549 R KEGG: son:SO1741 hypothetical protein; hypothetical protein complement(3027251..3028549) Shewanella sp. W3-18-1 4660223 YP_964033.1 CDS Sputw3181_2656 NC_008750.1 3028766 3028999 D PFAM: protein of unknown function DUF1289; KEGG: shm:Shewmr7_2617 protein of unknown function DUF1289; hypothetical protein 3028766..3028999 Shewanella sp. W3-18-1 4659849 YP_964034.1 CDS Sputw3181_2657 NC_008750.1 3029020 3029382 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: son:SO1738 hypothetical protein; hypothetical protein complement(3029020..3029382) Shewanella sp. W3-18-1 4659555 YP_964035.1 CDS Sputw3181_2658 NC_008750.1 3029518 3031494 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: she:Shewmr4_2552 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter complement(3029518..3031494) Shewanella sp. W3-18-1 4659087 YP_964036.1 CDS Sputw3181_2659 NC_008750.1 3031889 3032473 R KEGG: son:SO1736 hypothetical protein; hypothetical protein complement(3031889..3032473) Shewanella sp. W3-18-1 4660048 YP_964037.1 CDS Sputw3181_2660 NC_008750.1 3032634 3033029 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO1734 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 3032634..3033029 Shewanella sp. W3-18-1 4660098 YP_964038.1 CDS Sputw3181_2661 NC_008750.1 3033239 3034861 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ilo:IL0610 methyl-accepting chemotaxis protein (contains HAMP domain); methyl-accepting chemotaxis sensory transducer complement(3033239..3034861) Shewanella sp. W3-18-1 4660100 YP_964039.1 CDS Sputw3181_2662 NC_008750.1 3035406 3036116 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU complement(3035406..3036116) Shewanella sp. W3-18-1 4660101 YP_964040.1 CDS Sputw3181_2663 NC_008750.1 3036190 3037008 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(3036190..3037008) Shewanella sp. W3-18-1 4660103 YP_964041.1 CDS Sputw3181_2664 NC_008750.1 3037042 3038700 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: she:Shewmr4_2559 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease complement(3037042..3038700) Shewanella sp. W3-18-1 4660105 YP_964042.1 CDS Sputw3181_2665 NC_008750.1 3038760 3041018 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2627 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3038760..3041018) Shewanella sp. W3-18-1 4660109 YP_964043.1 CDS Sputw3181_2666 NC_008750.1 3041217 3041717 D PFAM: amino acid-binding ACT domain protein; KEGG: son:SO1722 ACT domain protein; amino acid-binding ACT domain-containing protein 3041217..3041717 Shewanella sp. W3-18-1 4660114 YP_964044.1 CDS Sputw3181_2667 NC_008750.1 3041976 3042800 D KEGG: shm:Shewmr7_2631 hypothetical protein; hypothetical protein 3041976..3042800 Shewanella sp. W3-18-1 4660115 YP_964045.1 CDS Sputw3181_2668 NC_008750.1 3043112 3043687 D hypothetical protein 3043112..3043687 Shewanella sp. W3-18-1 4660116 YP_964046.1 CDS Sputw3181_2669 NC_008750.1 3043798 3044193 R KEGG: shm:Shewmr7_2632 hypothetical protein; hypothetical protein complement(3043798..3044193) Shewanella sp. W3-18-1 4660122 YP_964047.1 CDS Sputw3181_2671 NC_008750.1 3044909 3045502 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_2634 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3044909..3045502 Shewanella sp. W3-18-1 4659369 YP_964048.1 CDS Sputw3181_2672 NC_008750.1 3045529 3046083 D PFAM: protein of unknown function DUF1415; KEGG: shm:Shewmr7_2635 protein of unknown function DUF1415; hypothetical protein 3045529..3046083 Shewanella sp. W3-18-1 4660128 YP_964049.1 CDS Sputw3181_2673 NC_008750.1 3046156 3046644 D hypothetical protein 3046156..3046644 Shewanella sp. W3-18-1 4660129 YP_964050.1 CDS Sputw3181_2674 NC_008750.1 3046749 3048653 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppu:PP_5020 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(3046749..3048653) Shewanella sp. W3-18-1 4660130 YP_964051.1 CDS Sputw3181_2675 NC_008750.1 3048976 3049506 R KEGG: son:SO1711 hypothetical protein; hypothetical protein complement(3048976..3049506) Shewanella sp. W3-18-1 4660131 YP_964052.1 CDS Sputw3181_2676 NC_008750.1 3049630 3050103 R KEGG: son:SO1710 hypothetical protein; hypothetical protein complement(3049630..3050103) Shewanella sp. W3-18-1 4660136 YP_964053.1 CDS Sputw3181_2677 NC_008750.1 3050288 3051574 R PFAM: acetyl-CoA hydrolase/transferase; KEGG: son:SO1708 4-hydroxybutyrate coenzyme A transferase; acetyl-CoA hydrolase/transferase complement(3050288..3051574) Shewanella sp. W3-18-1 4660143 YP_964054.1 CDS Sputw3181_2678 NC_008750.1 3051839 3052960 R PFAM: ABC-2 type transporter; KEGG: shm:Shewmr7_2640 ABC-2 type transporter; ABC transporter complement(3051839..3052960) Shewanella sp. W3-18-1 4660144 YP_964055.1 CDS Sputw3181_2679 NC_008750.1 3052950 3053903 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_2574 ABC transporter related; ABC transporter-like protein complement(3052950..3053903) Shewanella sp. W3-18-1 4660147 YP_964056.1 CDS Sputw3181_2680 NC_008750.1 3053900 3054898 R PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_2575 secretion protein HlyD family protein; secretion protein HlyD family protein complement(3053900..3054898) Shewanella sp. W3-18-1 4660148 YP_964057.1 CDS Sputw3181_2681 NC_008750.1 3054898 3055596 R PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_2643 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3054898..3055596) Shewanella sp. W3-18-1 4660151 YP_964058.1 CDS Sputw3181_2682 NC_008750.1 3055782 3056129 R KEGG: shm:Shewmr7_2644 hypothetical protein; hypothetical protein complement(3055782..3056129) Shewanella sp. W3-18-1 4660154 YP_964059.1 CDS Sputw3181_2683 NC_008750.1 3056620 3059898 D PFAM: transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: shm:Shewmr7_2647 transcriptional regulator, CadC; transcriptional regulator CadC 3056620..3059898 Shewanella sp. W3-18-1 4660156 YP_964060.1 CDS Sputw3181_2684 NC_008750.1 3059920 3060294 D KEGG: she:Shewmr4_2581 hypothetical protein; hypothetical protein 3059920..3060294 Shewanella sp. W3-18-1 4660159 YP_964061.1 CDS Sputw3181_2685 NC_008750.1 3060712 3061746 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: son:SO4548 transposase, IS110 family; transposase IS116/IS110/IS902 family protein complement(3060712..3061746) Shewanella sp. W3-18-1 4660162 YP_964062.1 CDS Sputw3181_2687 NC_008750.1 3062241 3062336 D KEGG: shm:Shewmr7_1178 protein of unknown function DUF1568; hypothetical protein 3062241..3062336 Shewanella sp. W3-18-1 4659366 YP_964063.1 CDS Sputw3181_2689 NC_008750.1 3062819 3063838 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: she:Shewmr4_2582 diguanylate cyclase; PAS/PAC sensor-containing diguanylate cyclase 3062819..3063838 Shewanella sp. W3-18-1 4659362 YP_964064.1 CDS Sputw3181_2690 NC_008750.1 3063945 3066620 D PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: shm:Shewmr7_2650 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 3063945..3066620 Shewanella sp. W3-18-1 4660175 YP_964065.1 CDS Sputw3181_2691 NC_008750.1 3066809 3067324 D PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: son:SO1691 lipoprotein Blc; lipocalin family protein 3066809..3067324 Shewanella sp. W3-18-1 4660177 YP_964066.1 CDS Sputw3181_2692 NC_008750.1 3067431 3068999 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1690 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(3067431..3068999) Shewanella sp. W3-18-1 4660178 YP_964067.1 CDS Sputw3181_2693 NC_008750.1 3069371 3071605 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: she:Shewmr4_2587 copper-translocating P-type ATPase; copper-translocating P-type ATPase complement(3069371..3071605) Shewanella sp. W3-18-1 4660179 YP_964068.1 CDS Sputw3181_2694 NC_008750.1 3071736 3072137 D PFAM: regulatory protein, MerR; KEGG: she:Shewmr4_2588 transcriptional regulator, MerR family; MerR family transcriptional regulator 3071736..3072137 Shewanella sp. W3-18-1 4660182 YP_964069.1 CDS Sputw3181_2695 NC_008750.1 3072145 3074175 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: she:Shewmr4_2589 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(3072145..3074175) Shewanella sp. W3-18-1 4660185 YP_964070.1 CDS Sputw3181_2696 NC_008750.1 3074236 3074478 R KEGG: shm:Shewmr7_2657 hypothetical protein; hypothetical protein complement(3074236..3074478) Shewanella sp. W3-18-1 4660224 YP_964071.1 CDS fabG NC_008750.1 3074950 3075708 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(3074950..3075708) Shewanella sp. W3-18-1 4659360 YP_964072.1 CDS Sputw3181_2699 NC_008750.1 3075733 3076635 R KEGG: shm:Shewmr7_2659 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase complement(3075733..3076635) Shewanella sp. W3-18-1 4660263 YP_964073.1 CDS Sputw3181_2700 NC_008750.1 3076777 3077919 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shm:Shewmr7_2660 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(3076777..3077919) Shewanella sp. W3-18-1 4660336 YP_964074.1 CDS Sputw3181_2701 NC_008750.1 3077919 3078692 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3077919..3078692) Shewanella sp. W3-18-1 4660225 YP_964075.1 CDS Sputw3181_2702 NC_008750.1 3078752 3079909 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: shm:Shewmr7_2662 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(3078752..3079909) Shewanella sp. W3-18-1 4660540 YP_964076.1 CDS Sputw3181_2703 NC_008750.1 3079998 3081497 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: she:Shewmr4_2596 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(3079998..3081497) Shewanella sp. W3-18-1 4660545 YP_964077.1 CDS Sputw3181_2704 NC_008750.1 3081660 3082850 R KEGG: she:Shewmr4_2597 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(3081660..3082850) Shewanella sp. W3-18-1 4660579 YP_964078.1 CDS Sputw3181_2705 NC_008750.1 3083298 3084932 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vch:VCA0220 hemolysin secretion protein HylB; methyl-accepting chemotaxis sensory transducer 3083298..3084932 Shewanella sp. W3-18-1 4660398 YP_964079.1 CDS Sputw3181_2706 NC_008750.1 3084997 3085953 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(3084997..3085953) Shewanella sp. W3-18-1 4660735 YP_964080.1 CDS Sputw3181_2707 NC_008750.1 3086020 3086454 R KEGG: shm:Shewmr7_2666 hypothetical protein; hypothetical protein complement(3086020..3086454) Shewanella sp. W3-18-1 4660746 YP_964081.1 CDS Sputw3181_2708 NC_008750.1 3086572 3087315 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO1674 short chain dehydrogenase family protein; short-chain dehydrogenase/reductase SDR 3086572..3087315 Shewanella sp. W3-18-1 4660783 YP_964082.1 CDS Sputw3181_2709 NC_008750.1 3087395 3088054 R receptor for colicin S4; outer membrane protein W complement(3087395..3088054) Shewanella sp. W3-18-1 4660791 YP_964083.1 CDS Sputw3181_2710 NC_008750.1 3088426 3089082 R PFAM: protein of unknown function DUF925; KEGG: she:Shewmr4_2602 protein of unknown function DUF925; hypothetical protein complement(3088426..3089082) Shewanella sp. W3-18-1 4660796 YP_964084.1 CDS Sputw3181_2711 NC_008750.1 3089108 3089758 R TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: son:SO1671 glutathione S-transferase family protein; maleylacetoacetate isomerase complement(3089108..3089758) Shewanella sp. W3-18-1 4660804 YP_964085.1 CDS Sputw3181_2712 NC_008750.1 3089846 3090832 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1670 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase complement(3089846..3090832) Shewanella sp. W3-18-1 4660806 YP_964086.1 CDS Sputw3181_2713 NC_008750.1 3091213 3092751 R PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_2672 transcriptional regulator, TyrR; transcriptional regulator TyrR complement(3091213..3092751) Shewanella sp. W3-18-1 4660809 YP_964087.1 CDS phhB NC_008750.1 3093010 3093348 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(3093010..3093348) Shewanella sp. W3-18-1 4660820 YP_964088.1 CDS phhA NC_008750.1 3093443 3094243 R phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase complement(3093443..3094243) Shewanella sp. W3-18-1 4660823 YP_964089.1 CDS Sputw3181_2716 NC_008750.1 3094555 3095463 D KEGG: shm:Shewmr7_2675 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase GalU 3094555..3095463 Shewanella sp. W3-18-1 4660824 YP_964090.1 CDS Sputw3181_2717 NC_008750.1 3095463 3096476 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: she:Shewmr4_2609 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 3095463..3096476 Shewanella sp. W3-18-1 4660837 YP_964091.1 CDS Sputw3181_2718 NC_008750.1 3096547 3097053 D TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_2677 ferredoxin-type protein NapF; ferredoxin-type protein NapF 3096547..3097053 Shewanella sp. W3-18-1 4660854 YP_964092.1 CDS Sputw3181_2719 NC_008750.1 3097142 3097555 D PFAM: protein of unknown function DUF583; KEGG: shm:Shewmr7_2678 protein of unknown function DUF583; hypothetical protein 3097142..3097555 Shewanella sp. W3-18-1 4660857 YP_964093.1 CDS Sputw3181_2720 NC_008750.1 3097871 3098845 D PFAM: regulatory protein, LysR; KEGG: son:SO1661 transcriptional regulator, LysR family; LysR family transcriptional regulator 3097871..3098845 Shewanella sp. W3-18-1 4660416 YP_964094.1 CDS Sputw3181_2721 NC_008750.1 3099253 3101559 D KEGG: son:SO1659 decaheme cytochrome c; decaheme cytochrome c 3099253..3101559 Shewanella sp. W3-18-1 4660860 YP_964095.1 CDS Sputw3181_2722 NC_008750.1 3102770 3103303 R hypothetical protein complement(3102770..3103303) Shewanella sp. W3-18-1 4660875 YP_964096.1 CDS Sputw3181_2725 NC_008750.1 3105216 3105596 R hypothetical protein complement(3105216..3105596) Shewanella sp. W3-18-1 4660996 YP_964097.1 CDS Sputw3181_2726 NC_008750.1 3105599 3107620 R TIGRFAM: YD repeat protein; KEGG: shm:Shewmr7_1124 YD repeat protein; YD repeat-containing protein complement(3105599..3107620) Shewanella sp. W3-18-1 4660884 YP_964098.1 CDS Sputw3181_2727 NC_008750.1 3107946 3108194 R hypothetical protein complement(3107946..3108194) Shewanella sp. W3-18-1 4660885 YP_964099.1 CDS Sputw3181_2728 NC_008750.1 3108207 3115625 R TIGRFAM: YD repeat protein; PFAM: Fibronectin, type III domain protein; YD repeat-containing protein; FG-GAP repeat protein; KEGG: shm:Shewmr7_1124 YD repeat protein; YD repeat-containing protein complement(3108207..3115625) Shewanella sp. W3-18-1 4657921 YP_964100.1 CDS Sputw3181_2729 NC_008750.1 3115844 3116440 R PFAM: phage integrase family protein; KEGG: shm:Shewmr7_3899 phage integrase family protein; phage integrase family protein complement(3115844..3116440) Shewanella sp. W3-18-1 4661854 YP_964101.1 CDS Sputw3181_2730 NC_008750.1 3116679 3117353 R KEGG: shm:Shewmr7_2681 hypothetical protein; hypothetical protein complement(3116679..3117353) Shewanella sp. W3-18-1 4661837 YP_964102.1 CDS Sputw3181_2731 NC_008750.1 3117357 3118052 R PFAM: protein of unknown function DUF218; KEGG: son:SO1657 hypothetical protein; hypothetical protein complement(3117357..3118052) Shewanella sp. W3-18-1 4661810 YP_964103.1 CDS Sputw3181_2732 NC_008750.1 3118200 3119117 R catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase complement(3118200..3119117) Shewanella sp. W3-18-1 4661600 YP_964104.1 CDS Sputw3181_2733 NC_008750.1 3119190 3120011 R TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: shm:Shewmr7_2684 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase complement(3119190..3120011) Shewanella sp. W3-18-1 4660346 YP_964105.1 CDS Sputw3181_2734 NC_008750.1 3120105 3120860 R PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: she:Shewmr4_2619 PHP C-terminal domain protein; putative hydrolase complement(3120105..3120860) Shewanella sp. W3-18-1 4661198 YP_964106.1 CDS Sputw3181_2735 NC_008750.1 3120909 3124130 R PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_2687 SNF2-related protein; SNF2-like protein complement(3120909..3124130) Shewanella sp. W3-18-1 4661186 YP_964107.1 CDS Sputw3181_2736 NC_008750.1 3124359 3126203 R PFAM: protein of unknown function DUF885; KEGG: she:Shewmr4_2621 protein of unknown function DUF885; hypothetical protein complement(3124359..3126203) Shewanella sp. W3-18-1 4661126 YP_964108.1 CDS Sputw3181_2737 NC_008750.1 3126980 3127189 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: shm:Shewmr7_2689 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 3126980..3127189 Shewanella sp. W3-18-1 4661135 YP_964109.1 CDS Sputw3181_2738 NC_008750.1 3127543 3128421 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1646 GGDEF family protein; diguanylate cyclase 3127543..3128421 Shewanella sp. W3-18-1 4661122 YP_964110.1 CDS Sputw3181_2739 NC_008750.1 3128484 3129881 R TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: she:Shewmr4_2625 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase complement(3128484..3129881) Shewanella sp. W3-18-1 4661105 YP_964111.1 CDS dnaE NC_008750.1 3129941 3133414 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(3129941..3133414) Shewanella sp. W3-18-1 4661114 YP_964112.1 CDS rnhB NC_008750.1 3133532 3134161 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(3133532..3134161) Shewanella sp. W3-18-1 4661069 YP_964113.1 CDS lpxB NC_008750.1 3134164 3135318 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(3134164..3135318) Shewanella sp. W3-18-1 4661059 YP_964114.1 CDS Sputw3181_2743 NC_008750.1 3135441 3136211 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(3135441..3136211) Shewanella sp. W3-18-1 4661020 YP_964115.1 CDS fabZ NC_008750.1 3136208 3136672 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(3136208..3136672) Shewanella sp. W3-18-1 4661061 YP_964116.1 CDS lpxD NC_008750.1 3136702 3137727 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(3136702..3137727) Shewanella sp. W3-18-1 4658598 YP_964117.1 CDS Sputw3181_2746 NC_008750.1 3137731 3138228 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: shm:Shewmr7_2699 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp complement(3137731..3138228) Shewanella sp. W3-18-1 4661876 YP_964118.1 CDS Sputw3181_2747 NC_008750.1 3138293 3140773 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: shm:Shewmr7_2700 surface antigen (D15); surface antigen (D15) complement(3138293..3140773) Shewanella sp. W3-18-1 4661864 YP_964119.1 CDS Sputw3181_2748 NC_008750.1 3140805 3142175 R TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: shm:Shewmr7_2701 putative membrane-associated zinc metalloprotease; putative membrane-associated zinc metalloprotease complement(3140805..3142175) Shewanella sp. W3-18-1 4661860 YP_964120.1 CDS Sputw3181_2749 NC_008750.1 3142218 3143399 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3142218..3143399) Shewanella sp. W3-18-1 4661856 YP_964121.1 CDS Sputw3181_2750 NC_008750.1 3143413 3144270 R PFAM: phosphatidate cytidylyltransferase; KEGG: shm:Shewmr7_2703 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(3143413..3144270) Shewanella sp. W3-18-1 4661841 YP_964122.1 CDS Sputw3181_2751 NC_008750.1 3144291 3145118 R KEGG: son:SO1633 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(3144291..3145118) Shewanella sp. W3-18-1 4661715 YP_964123.1 CDS frr NC_008750.1 3145201 3145758 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(3145201..3145758) Shewanella sp. W3-18-1 4661830 YP_964124.1 CDS pyrH NC_008750.1 3145780 3146517 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(3145780..3146517) Shewanella sp. W3-18-1 4661798 YP_964125.1 CDS tsf NC_008750.1 3146586 3147437 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(3146586..3147437) Shewanella sp. W3-18-1 4661816 YP_964126.1 CDS rpsB NC_008750.1 3147558 3148286 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(3147558..3148286) Shewanella sp. W3-18-1 4661789 YP_964127.1 CDS Sputw3181_2756 NC_008750.1 3148595 3149395 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 3148595..3149395 Shewanella sp. W3-18-1 4661769 YP_964128.1 CDS Sputw3181_2757 NC_008750.1 3149418 3152000 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3149418..3152000 Shewanella sp. W3-18-1 4661749 YP_964129.1 CDS dapD NC_008750.1 3152026 3152850 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 3152026..3152850 Shewanella sp. W3-18-1 4660342 YP_964130.1 CDS Sputw3181_2759 NC_008750.1 3152920 3154851 R KEGG: shm:Shewmr7_2713 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: CBS domain containing protein; GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(3152920..3154851) Shewanella sp. W3-18-1 4661721 YP_964131.1 CDS purU NC_008750.1 3155025 3155975 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(3155025..3155975) Shewanella sp. W3-18-1 4661710 YP_964132.1 CDS Sputw3181_2761 NC_008750.1 3156090 3157571 R TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: shm:Shewmr7_2715 PTS system, glucose-like IIB subunint; PTS system glucose-like transporter subunit IIB complement(3156090..3157571) Shewanella sp. W3-18-1 4661727 YP_964133.1 CDS Sputw3181_2762 NC_008750.1 3157523 3157987 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(3157523..3157987) Shewanella sp. W3-18-1 4661720 YP_964134.1 CDS Sputw3181_2763 NC_008750.1 3158112 3158294 D hypothetical protein 3158112..3158294 Shewanella sp. W3-18-1 4661704 YP_964135.1 CDS Sputw3181_2764 NC_008750.1 3158378 3159220 R PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_2717 pseudouridylate synthase; pseudouridylate synthase complement(3158378..3159220) Shewanella sp. W3-18-1 4661701 YP_964136.1 CDS Sputw3181_2765 NC_008750.1 3159207 3159527 R PFAM: protein of unknown function DUF446; KEGG: shm:Shewmr7_2718 protein of unknown function DUF446; hypothetical protein complement(3159207..3159527) Shewanella sp. W3-18-1 4661657 YP_964137.1 CDS Sputw3181_2766 NC_008750.1 3159677 3160690 D KEGG: she:Shewmr4_2652 hypothetical protein; hypothetical protein 3159677..3160690 Shewanella sp. W3-18-1 4661679 YP_964138.1 CDS Sputw3181_2767 NC_008750.1 3160687 3161073 D KEGG: son:SO1617 hypothetical protein; hypothetical protein 3160687..3161073 Shewanella sp. W3-18-1 4661670 YP_964139.1 CDS Sputw3181_2768 NC_008750.1 3162362 3163000 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1614 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3162362..3163000) Shewanella sp. W3-18-1 4661663 YP_964140.1 CDS Sputw3181_2769 NC_008750.1 3163151 3163384 D KEGG: son:SO1613 hypothetical protein; hypothetical protein 3163151..3163384 Shewanella sp. W3-18-1 4661659 YP_964141.1 CDS Sputw3181_2770 NC_008750.1 3163416 3163811 R KEGG: shm:Shewmr7_2724 hypothetical protein; hypothetical protein complement(3163416..3163811) Shewanella sp. W3-18-1 4661641 YP_964142.1 CDS Sputw3181_2771 NC_008750.1 3163957 3164340 D KEGG: shm:Shewmr7_2725 hypothetical protein; hypothetical protein 3163957..3164340 Shewanella sp. W3-18-1 4661636 YP_964143.1 CDS Sputw3181_2772 NC_008750.1 3164340 3165113 D KEGG: son:SO1610 hypothetical protein; hypothetical protein 3164340..3165113 Shewanella sp. W3-18-1 4661364 YP_964144.1 CDS Sputw3181_2773 NC_008750.1 3165212 3165862 R putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd complement(3165212..3165862) Shewanella sp. W3-18-1 4661582 YP_964145.1 CDS queF NC_008750.1 3165889 3166779 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3165889..3166779 Shewanella sp. W3-18-1 4661639 YP_964146.1 CDS Sputw3181_2775 NC_008750.1 3166882 3167805 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: shm:Shewmr7_2731 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase complement(3166882..3167805) Shewanella sp. W3-18-1 4661620 YP_964147.1 CDS Sputw3181_2776 NC_008750.1 3168198 3169067 D KEGG: shm:Shewmr7_2732 transcriptional regulator, putative; transcriptional regulator 3168198..3169067 Shewanella sp. W3-18-1 4661627 YP_964148.1 CDS Sputw3181_2777 NC_008750.1 3169064 3176998 D PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_2733 beta-ketoacyl synthase; erythronolide synthase 3169064..3176998 Shewanella sp. W3-18-1 4661607 YP_964149.1 CDS Sputw3181_2778 NC_008750.1 3176995 3179304 D KEGG: shm:Shewmr7_2734 omega-3 polyunsaturated fatty acid synthase PfaB; omega-3 polyunsaturated fatty acid synthase PfaB 3176995..3179304 Shewanella sp. W3-18-1 4661602 YP_964150.1 CDS Sputw3181_2779 NC_008750.1 3179301 3185258 D PFAM: beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: she:Shewmr4_2668 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ 3179301..3185258 Shewanella sp. W3-18-1 4661588 YP_964151.1 CDS Sputw3181_2780 NC_008750.1 3185363 3187021 D KEGG: shm:Shewmr7_2736 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 3185363..3187021 Shewanella sp. W3-18-1 4661591 YP_964152.1 CDS Sputw3181_2781 NC_008750.1 3187333 3187509 D PFAM: protein of unknown function DUF1328; KEGG: shm:Shewmr7_2739 protein of unknown function DUF1328; hypothetical protein 3187333..3187509 Shewanella sp. W3-18-1 4661583 YP_964153.1 CDS Sputw3181_2782 NC_008750.1 3187534 3187728 D KEGG: shm:Shewmr7_2740 hypothetical protein; hypothetical protein 3187534..3187728 Shewanella sp. W3-18-1 4661595 YP_964154.1 CDS Sputw3181_2783 NC_008750.1 3187880 3189562 D PFAM: Dual specificity protein phosphatase; diacylglycerol kinase, catalytic region; KEGG: she:Shewmr4_2673 dual specificity protein phosphatase; hypothetical protein 3187880..3189562 Shewanella sp. W3-18-1 4661273 YP_964155.1 CDS Sputw3181_2784 NC_008750.1 3189640 3191013 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_2742 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator complement(3189640..3191013) Shewanella sp. W3-18-1 4661536 YP_964156.1 CDS Sputw3181_2785 NC_008750.1 3191249 3191698 D KEGG: shm:Shewmr7_2743 hypothetical protein; hypothetical protein 3191249..3191698 Shewanella sp. W3-18-1 4660348 YP_964157.1 CDS Sputw3181_2786 NC_008750.1 3191926 3192471 D PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: shm:Shewmr7_2744 transport-associated; transport-associated 3191926..3192471 Shewanella sp. W3-18-1 4661525 YP_964158.1 CDS Sputw3181_2787 NC_008750.1 3192633 3193421 R KEGG: son:SO1589 hypothetical protein; hypothetical protein complement(3192633..3193421) Shewanella sp. W3-18-1 4661517 YP_964159.1 CDS Sputw3181_2788 NC_008750.1 3193752 3193994 D KEGG: she:Shewmr4_2686 hypothetical protein; hypothetical protein 3193752..3193994 Shewanella sp. W3-18-1 4661522 YP_964160.1 CDS Sputw3181_2789 NC_008750.1 3194105 3194731 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1585 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase complement(3194105..3194731) Shewanella sp. W3-18-1 4661520 YP_964161.1 CDS Sputw3181_2790 NC_008750.1 3194903 3196930 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: sdn:Sden_2638 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3194903..3196930 Shewanella sp. W3-18-1 4661153 YP_964162.1 CDS Sputw3181_2791 NC_008750.1 3196936 3197949 R PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO1583 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase complement(3196936..3197949) Shewanella sp. W3-18-1 4661478 YP_964163.1 CDS Sputw3181_2792 NC_008750.1 3198075 3198653 R PFAM: regulatory protein, MarR; KEGG: shm:Shewmr7_2759 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(3198075..3198653) Shewanella sp. W3-18-1 4661465 YP_964164.1 CDS Sputw3181_2793 NC_008750.1 3198884 3200089 D PFAM: major facilitator superfamily MFS_1; KEGG: pau:PA14_03550 putative MFS transporter; major facilitator superfamily transporter 3198884..3200089 Shewanella sp. W3-18-1 4661440 YP_964165.1 CDS Sputw3181_2794 NC_008750.1 3200188 3200751 R PFAM: PhnA protein-like; SMART: PhnA protein N-terminal, proteobacterial; KEGG: son:SO1581 PhnA protein; putative PhnA protein complement(3200188..3200751) Shewanella sp. W3-18-1 4661446 YP_964166.1 CDS Sputw3181_2795 NC_008750.1 3200886 3203099 R TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1580 TonB-dependent heme receptor; TonB-dependent heme/hemoglobin receptor family protein complement(3200886..3203099) Shewanella sp. W3-18-1 4661448 YP_964167.1 CDS Sputw3181_2796 NC_008750.1 3203414 3204127 D KEGG: she:Shewmr4_2693 hypothetical protein; hypothetical protein 3203414..3204127 Shewanella sp. W3-18-1 4661423 YP_964168.1 CDS Sputw3181_2797 NC_008750.1 3204145 3204813 D PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: shm:Shewmr7_2764 glutathione S-transferase, N-terminal domain protein; glutathione S-transferase domain-containing protein 3204145..3204813 Shewanella sp. W3-18-1 4661390 YP_964169.1 CDS Sputw3181_2798 NC_008750.1 3205053 3206444 D PFAM: Fmu (Sun) domain protein; KEGG: son:SO1575 NOL1/NOP2/sun family putative RNA methylase; Fmu (Sun) domain-containing protein 3205053..3206444 Shewanella sp. W3-18-1 4661339 YP_964170.1 CDS Sputw3181_2799 NC_008750.1 3206694 3206891 D KEGG: she:Shewmr4_2698 hypothetical protein; hypothetical protein 3206694..3206891 Shewanella sp. W3-18-1 4661326 YP_964171.1 CDS Sputw3181_2800 NC_008750.1 3207189 3207728 R PFAM: YfaZ family protein; KEGG: she:Shewmr4_2702 YfaZ family protein; hypothetical protein complement(3207189..3207728) Shewanella sp. W3-18-1 4661306 YP_964172.1 CDS Sputw3181_2801 NC_008750.1 3207893 3208414 R PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_2703 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3207893..3208414) Shewanella sp. W3-18-1 4661146 YP_964173.1 CDS Sputw3181_2802 NC_008750.1 3208459 3209913 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: she:Shewmr4_2704 MgtE intracellular region; magnesium transporter complement(3208459..3209913) Shewanella sp. W3-18-1 4661304 YP_964174.1 CDS Sputw3181_2803 NC_008750.1 3209977 3210462 D PFAM: glutathione peroxidase; KEGG: she:Shewmr4_2705 glutathione peroxidase; glutathione peroxidase 3209977..3210462 Shewanella sp. W3-18-1 4661287 YP_964175.1 CDS Sputw3181_2804 NC_008750.1 3211027 3212865 R PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1561 peptidase, M1 family; peptidase M1, membrane alanine aminopeptidase complement(3211027..3212865) Shewanella sp. W3-18-1 4661194 YP_964176.1 CDS Sputw3181_2805 NC_008750.1 3213331 3214302 R TIGRFAM: phosphate binding protein; KEGG: she:Shewmr4_2707 phosphate binding protein; phosphate binding protein complement(3213331..3214302) Shewanella sp. W3-18-1 4661282 YP_964177.1 CDS Sputw3181_2806 NC_008750.1 3214529 3215827 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: son:SO1559 phosphate regulon sensor protein PhoR; PAS/PAC sensor signal transduction histidine kinase complement(3214529..3215827) Shewanella sp. W3-18-1 4661254 YP_964178.1 CDS Sputw3181_2807 NC_008750.1 3215907 3216596 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_2777 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(3215907..3216596) Shewanella sp. W3-18-1 4661272 YP_964179.1 CDS Sputw3181_2808 NC_008750.1 3216783 3217748 R PFAM: porin, Gram-negative type; KEGG: son:SO1557 outer membrane porin, putative; porin complement(3216783..3217748) Shewanella sp. W3-18-1 4661268 YP_964180.1 CDS rdgC NC_008750.1 3218040 3218954 D Required for efficient pilin antigenic variation; recombination associated protein 3218040..3218954 Shewanella sp. W3-18-1 4661167 YP_964181.1 CDS Sputw3181_2810 NC_008750.1 3219036 3220847 R PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: she:Shewmr4_2712 peptidase M61 domain protein; peptidase M61 domain-containing protein complement(3219036..3220847) Shewanella sp. W3-18-1 4661260 YP_964182.1 CDS Sputw3181_2811 NC_008750.1 3220982 3223153 D PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_2781 TPR repeat-containing protein; hypothetical protein 3220982..3223153 Shewanella sp. W3-18-1 4661237 YP_964183.1 CDS Sputw3181_2812 NC_008750.1 3223306 3224862 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_2782 diguanylate cyclase; diguanylate cyclase 3223306..3224862 Shewanella sp. W3-18-1 4661185 YP_964184.1 CDS Sputw3181_2813 NC_008750.1 3224918 3226273 D PFAM: conserved hypothetical protein 730; KEGG: shm:Shewmr7_2783 conserved hypothetical protein 730; hypothetical protein 3224918..3226273 Shewanella sp. W3-18-1 4660715 YP_964185.1 CDS xni NC_008750.1 3226295 3227083 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3226295..3227083 Shewanella sp. W3-18-1 4661362 YP_964186.1 CDS Sputw3181_2815 NC_008750.1 3227194 3227619 D KEGG: she:Shewmr4_2717 hypothetical protein; hypothetical protein 3227194..3227619 Shewanella sp. W3-18-1 4660385 YP_964187.1 CDS Sputw3181_2816 NC_008750.1 3227768 3229270 R PFAM: transposase IS66; KEGG: pha:PSHAa0410 transposase; transposase IS66 complement(3227768..3229270) Shewanella sp. W3-18-1 4660384 YP_964188.1 CDS Sputw3181_2817 NC_008750.1 3229351 3229701 R PFAM: IS66 Orf2 family protein; KEGG: pha:PSHAa0409 hypothetical protein; IS66 Orf2 family protein complement(3229351..3229701) Shewanella sp. W3-18-1 4661466 YP_964189.1 CDS Sputw3181_2818 NC_008750.1 3229698 3230054 R hypothetical protein complement(3229698..3230054) Shewanella sp. W3-18-1 4660374 YP_964190.1 CDS Sputw3181_2819 NC_008750.1 3230104 3232905 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: she:Shewmr4_2719 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(3230104..3232905) Shewanella sp. W3-18-1 4660370 YP_964191.1 CDS Sputw3181_2820 NC_008750.1 3233159 3234169 D catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 3233159..3234169 Shewanella sp. W3-18-1 4660356 YP_964192.1 CDS Sputw3181_2821 NC_008750.1 3234267 3235352 R KEGG: son:SO1536 hypothetical protein; putative RNA 2'-O-ribose methyltransferase complement(3234267..3235352) Shewanella sp. W3-18-1 4660353 YP_964193.1 CDS Sputw3181_2822 NC_008750.1 3235530 3235961 R PFAM: protein of unknown function DUF423; KEGG: son:SO1535 hypothetical protein; hypothetical protein complement(3235530..3235961) Shewanella sp. W3-18-1 4661017 YP_964194.1 CDS Sputw3181_2823 NC_008750.1 3235951 3236625 R KEGG: shm:Shewmr7_2794 hypothetical protein; hypothetical protein complement(3235951..3236625) Shewanella sp. W3-18-1 4660483 YP_964195.1 CDS Sputw3181_2824 NC_008750.1 3236606 3237517 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(3236606..3237517) Shewanella sp. W3-18-1 4659838 YP_964196.1 CDS Sputw3181_2825 NC_008750.1 3237695 3237934 D KEGG: shm:Shewmr7_2796 hypothetical protein; hypothetical protein 3237695..3237934 Shewanella sp. W3-18-1 4659827 YP_964197.1 CDS Sputw3181_2826 NC_008750.1 3238020 3239474 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(3238020..3239474) Shewanella sp. W3-18-1 4659128 YP_964198.1 CDS motB NC_008750.1 3239688 3240614 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB complement(3239688..3240614) Shewanella sp. W3-18-1 4659121 YP_964199.1 CDS Sputw3181_2828 NC_008750.1 3240618 3241385 R Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA complement(3240618..3241385) Shewanella sp. W3-18-1 4657770 YP_964200.1 CDS Sputw3181_2829 NC_008750.1 3241697 3241936 D TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: shm:Shewmr7_2802 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 3241697..3241936 Shewanella sp. W3-18-1 4659817 YP_964201.1 CDS Sputw3181_2830 NC_008750.1 3241939 3242820 D PFAM: Polyprenyl synthetase; KEGG: son:SO1526 geranyltranstransferase; polyprenyl synthetase 3241939..3242820 Shewanella sp. W3-18-1 4659102 YP_964202.1 CDS Sputw3181_2831 NC_008750.1 3242842 3244710 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3242842..3244710 Shewanella sp. W3-18-1 4661758 YP_964203.1 CDS Sputw3181_2832 NC_008750.1 3244815 3245435 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(3244815..3245435) Shewanella sp. W3-18-1 4657736 YP_964204.1 CDS ppnK NC_008750.1 3245485 3246414 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3245485..3246414 Shewanella sp. W3-18-1 4657731 YP_964205.1 CDS Sputw3181_2834 NC_008750.1 3247261 3248904 D PFAM: L-lactate permease; KEGG: son:SO1522 L-lactate permease, putative; L-lactate permease 3247261..3248904 Shewanella sp. W3-18-1 4661374 YP_964206.1 CDS Sputw3181_2835 NC_008750.1 3248984 3251788 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: son:SO1521 iron-sulfur cluster-binding protein; FAD linked oxidase domain-containing protein 3248984..3251788 Shewanella sp. W3-18-1 4657722 YP_964207.1 CDS Sputw3181_2836 NC_008750.1 3252101 3252844 D PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: she:Shewmr4_2736 protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein 3252101..3252844 Shewanella sp. W3-18-1 4657717 YP_964208.1 CDS Sputw3181_2837 NC_008750.1 3252855 3254249 D KEGG: shm:Shewmr7_2810 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3252855..3254249 Shewanella sp. W3-18-1 4661509 YP_964209.1 CDS Sputw3181_2838 NC_008750.1 3254251 3254820 D PFAM: protein of unknown function DUF162; KEGG: she:Shewmr4_2738 protein of unknown function DUF162; hypothetical protein 3254251..3254820 Shewanella sp. W3-18-1 4661242 YP_964210.1 CDS Sputw3181_2839 NC_008750.1 3255385 3256563 D PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_2812 AAA ATPase, central domain protein; ATPase central domain-containing protein 3255385..3256563 Shewanella sp. W3-18-1 4658588 YP_964211.1 CDS Sputw3181_2840 NC_008750.1 3256994 3257275 R hypothetical protein complement(3256994..3257275) Shewanella sp. W3-18-1 4658339 YP_964212.1 CDS Sputw3181_2841 NC_008750.1 3257335 3258051 R hypothetical protein complement(3257335..3258051) Shewanella sp. W3-18-1 4657834 YP_964213.1 CDS Sputw3181_2842 NC_008750.1 3258163 3258621 R hypothetical protein complement(3258163..3258621) Shewanella sp. W3-18-1 4657840 YP_964214.1 CDS Sputw3181_2843 NC_008750.1 3259170 3259445 D KEGG: she:Shewmr4_1443 hypothetical protein; hypothetical protein 3259170..3259445 Shewanella sp. W3-18-1 4657847 YP_964215.1 CDS Sputw3181_2844 NC_008750.1 3259696 3261207 R KEGG: shm:Shewmr7_2824 hypothetical protein; hypothetical protein complement(3259696..3261207) Shewanella sp. W3-18-1 4657856 YP_964216.1 CDS Sputw3181_2845 NC_008750.1 3261450 3262799 R PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO1506 MATE efflux family protein; multi anti extrusion protein MatE complement(3261450..3262799) Shewanella sp. W3-18-1 4657858 YP_964217.1 CDS Sputw3181_2846 NC_008750.1 3263199 3264740 D PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_2748 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3263199..3264740 Shewanella sp. W3-18-1 4657922 YP_964218.1 CDS Sputw3181_2847 NC_008750.1 3264819 3265340 R KEGG: son:SO1504 hypothetical protein; hypothetical protein complement(3264819..3265340) Shewanella sp. W3-18-1 4658050 YP_964219.1 CDS Sputw3181_2848 NC_008750.1 3265704 3266465 D SMART: extracellular solute-binding protein, family 3; KEGG: son:SO1503 ABC transporter, periplasmic substrate-binding protein, putative; extracellular solute-binding protein 3265704..3266465 Shewanella sp. W3-18-1 4658071 YP_964220.1 CDS Sputw3181_2849 NC_008750.1 3266479 3267561 R PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: son:SO1502 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein, P47K complement(3266479..3267561) Shewanella sp. W3-18-1 4658105 YP_964221.1 CDS Sputw3181_2850 NC_008750.1 3267676 3269121 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO1501 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase complement(3267676..3269121) Shewanella sp. W3-18-1 4658114 YP_964222.1 CDS Sputw3181_2851 NC_008750.1 3269242 3272298 R KEGG: shm:Shewmr7_2831 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type, transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(3269242..3272298) Shewanella sp. W3-18-1 4658134 YP_964223.1 CDS Sputw3181_2852 NC_008750.1 3272407 3274014 R PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: shm:Shewmr7_2832 starch synthase; starch synthase complement(3272407..3274014) Shewanella sp. W3-18-1 4658139 YP_964224.1 CDS glgC NC_008750.1 3274085 3275347 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(3274085..3275347) Shewanella sp. W3-18-1 4658171 YP_964225.1 CDS Sputw3181_2854 NC_008750.1 3275398 3277926 R KEGG: she:Shewmr4_2756 glycogen/starch/alpha-glucan phosphorylases; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase complement(3275398..3277926) Shewanella sp. W3-18-1 4658177 YP_964226.1 CDS Sputw3181_2855 NC_008750.1 3277929 3280136 R KEGG: son:SO1495 glycogen operon protein; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX complement(3277929..3280136) Shewanella sp. W3-18-1 4658182 YP_964227.1 CDS Sputw3181_2856 NC_008750.1 3280133 3282370 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(3280133..3282370) Shewanella sp. W3-18-1 4658183 YP_964228.1 CDS Sputw3181_2857 NC_008750.1 3282435 3284672 R KEGG: shm:Shewmr7_2837 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; 4-alpha-glucanotransferase complement(3282435..3284672) Shewanella sp. W3-18-1 4658213 YP_964229.1 CDS Sputw3181_2858 NC_008750.1 3285185 3285817 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: shm:Shewmr7_2838 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3285185..3285817 Shewanella sp. W3-18-1 4658219 YP_964230.1 CDS Sputw3181_2859 NC_008750.1 3285913 3286389 R PFAM: regulatory protein, MarR; KEGG: she:Shewmr4_2761 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(3285913..3286389) Shewanella sp. W3-18-1 4658221 YP_964231.1 CDS Sputw3181_2860 NC_008750.1 3286727 3287875 D PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO1490 alcohol dehydrogenase II; iron-containing alcohol dehydrogenase 3286727..3287875 Shewanella sp. W3-18-1 4658226 YP_964232.1 CDS Sputw3181_2861 NC_008750.1 3288638 3289009 D KEGG: shm:Shewmr7_2841 hypothetical protein; hypothetical protein 3288638..3289009 Shewanella sp. W3-18-1 4658228 YP_964233.1 CDS Sputw3181_2862 NC_008750.1 3289387 3290685 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_3431 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3289387..3290685 Shewanella sp. W3-18-1 4658243 YP_964234.1 CDS Sputw3181_2863 NC_008750.1 3290776 3290997 D KEGG: son:SO1487 hypothetical protein; hypothetical protein 3290776..3290997 Shewanella sp. W3-18-1 4658262 YP_964235.1 CDS Sputw3181_2864 NC_008750.1 3291065 3291433 R PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2843 thioesterase superfamily protein; thioesterase superfamily protein complement(3291065..3291433) Shewanella sp. W3-18-1 4658271 YP_964236.1 CDS Sputw3181_2865 NC_008750.1 3291825 3293147 R TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: son:SO1484 isocitrate lyase; isocitrate lyase complement(3291825..3293147) Shewanella sp. W3-18-1 4658278 YP_964237.1 CDS Sputw3181_2866 NC_008750.1 3293282 3295009 R Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase complement(3293282..3295009) Shewanella sp. W3-18-1 4658285 YP_964238.1 CDS Sputw3181_2867 NC_008750.1 3295792 3298236 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1482 TonB-dependent receptor, putative; TonB-dependent receptor, plug 3295792..3298236 Shewanella sp. W3-18-1 4658283 YP_964239.1 CDS Sputw3181_2868 NC_008750.1 3298309 3300078 R TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: shm:Shewmr7_2847 potassium efflux system protein; potassium efflux system protein complement(3298309..3300078) Shewanella sp. W3-18-1 4658288 YP_964240.1 CDS Sputw3181_2869 NC_008750.1 3300242 3301852 R KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase complement(3300242..3301852) Shewanella sp. W3-18-1 4658289 YP_964241.1 CDS Sputw3181_2870 NC_008750.1 3302105 3303838 R KEGG: she:Shewmr4_2770 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase complement(3302105..3303838) Shewanella sp. W3-18-1 4658297 YP_964242.1 CDS Sputw3181_2871 NC_008750.1 3303902 3304114 R KEGG: shm:Shewmr7_2849 hypothetical protein; hypothetical protein complement(3303902..3304114) Shewanella sp. W3-18-1 4658299 YP_964243.1 CDS Sputw3181_2872 NC_008750.1 3304160 3304951 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: she:Shewmr4_2772 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase complement(3304160..3304951) Shewanella sp. W3-18-1 4658307 YP_964244.1 CDS Sputw3181_2873 NC_008750.1 3305538 3306062 D PFAM: SmpA/OmlA domain protein; KEGG: shm:Shewmr7_2851 SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein 3305538..3306062 Shewanella sp. W3-18-1 4658311 YP_964245.1 CDS Sputw3181_2874 NC_008750.1 3306141 3306473 R PFAM: protein of unknown function UPF0125; KEGG: shm:Shewmr7_2852 protein of unknown function UPF0125; hypothetical protein complement(3306141..3306473) Shewanella sp. W3-18-1 4658312 YP_964246.1 CDS Sputw3181_2875 NC_008750.1 3306463 3306900 R PFAM: cyclase/dehydrase; KEGG: shm:Shewmr7_2853 cyclase/dehydrase; cyclase/dehydrase complement(3306463..3306900) Shewanella sp. W3-18-1 4658317 YP_964247.1 CDS smpB NC_008750.1 3307175 3307666 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 3307175..3307666 Shewanella sp. W3-18-1 4658332 YP_964248.1 CDS Sputw3181_2877 NC_008750.1 3308838 3309233 R KEGG: noc:Noc_0165 hypothetical protein; hypothetical protein complement(3308838..3309233) Shewanella sp. W3-18-1 4659343 YP_964249.1 CDS Sputw3181_2878 NC_008750.1 3309661 3310401 R KEGG: shm:Shewmr7_0743 hypothetical protein; hypothetical protein complement(3309661..3310401) Shewanella sp. W3-18-1 4658406 YP_964250.1 CDS Sputw3181_2879 NC_008750.1 3310404 3311093 R KEGG: shm:Shewmr7_0742 hypothetical protein; hypothetical protein complement(3310404..3311093) Shewanella sp. W3-18-1 4658405 YP_964251.1 CDS Sputw3181_2880 NC_008750.1 3311093 3311620 R KEGG: shm:Shewmr7_0741 hypothetical protein; hypothetical protein complement(3311093..3311620) Shewanella sp. W3-18-1 4658691 YP_964252.1 CDS Sputw3181_2881 NC_008750.1 3311621 3314272 R KEGG: shm:Shewmr7_0740 hypothetical protein; hypothetical protein complement(3311621..3314272) Shewanella sp. W3-18-1 4658425 YP_964253.1 CDS Sputw3181_2882 NC_008750.1 3314309 3314944 R KEGG: shm:Shewmr7_0739 hypothetical protein; hypothetical protein complement(3314309..3314944) Shewanella sp. W3-18-1 4658711 YP_964254.1 CDS Sputw3181_2883 NC_008750.1 3314941 3316140 R KEGG: shm:Shewmr7_0738 putative bacteriophage protein; putative bacteriophage protein complement(3314941..3316140) Shewanella sp. W3-18-1 4658717 YP_964255.1 CDS Sputw3181_2884 NC_008750.1 3316140 3316472 R KEGG: shm:Shewmr7_0737 hypothetical protein; hypothetical protein complement(3316140..3316472) Shewanella sp. W3-18-1 4658742 YP_964256.1 CDS Sputw3181_2885 NC_008750.1 3316469 3318217 R TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: shm:Shewmr7_0736 phage tail tape measure protein, TP901 family; TP901 family phage tail tape measure protein complement(3316469..3318217) Shewanella sp. W3-18-1 4658745 YP_964257.1 CDS Sputw3181_2886 NC_008750.1 3318420 3318683 R KEGG: shm:Shewmr7_0735 hypothetical protein; hypothetical protein complement(3318420..3318683) Shewanella sp. W3-18-1 4657761 YP_964258.1 CDS Sputw3181_2887 NC_008750.1 3318680 3318943 R KEGG: shm:Shewmr7_0734 hypothetical protein; hypothetical protein complement(3318680..3318943) Shewanella sp. W3-18-1 4658580 YP_964259.1 CDS Sputw3181_2888 NC_008750.1 3318947 3319555 R KEGG: shm:Shewmr7_0733 hypothetical protein; hypothetical protein complement(3318947..3319555) Shewanella sp. W3-18-1 4658811 YP_964260.1 CDS Sputw3181_2889 NC_008750.1 3319567 3320115 R PFAM: protein of unknown function DUF847; KEGG: spt:SPA1608 hypothetical protein; hypothetical protein complement(3319567..3320115) Shewanella sp. W3-18-1 4658833 YP_964261.1 CDS Sputw3181_2890 NC_008750.1 3320117 3320320 R PFAM: zinc finger, DksA/TraR C4-type; KEGG: shm:Shewmr7_0730 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator complement(3320117..3320320) Shewanella sp. W3-18-1 4658849 YP_964262.1 CDS Sputw3181_2891 NC_008750.1 3320351 3320806 R KEGG: shm:Shewmr7_0729 prophage PSPPH06, putative tail tube protein; prophage PSPPH06 tail tube protein complement(3320351..3320806) Shewanella sp. W3-18-1 4658875 YP_964263.1 CDS Sputw3181_2892 NC_008750.1 3320819 3321925 R KEGG: shm:Shewmr7_0728 hypothetical protein; hypothetical protein complement(3320819..3321925) Shewanella sp. W3-18-1 4658890 YP_964264.1 CDS Sputw3181_2893 NC_008750.1 3321928 3322590 R KEGG: hch:HCH_06771 hypothetical protein; hypothetical protein complement(3321928..3322590) Shewanella sp. W3-18-1 4658893 YP_964265.1 CDS Sputw3181_2894 NC_008750.1 3322587 3323075 R KEGG: shm:Shewmr7_0726 hypothetical protein; hypothetical protein complement(3322587..3323075) Shewanella sp. W3-18-1 4658896 YP_964266.1 CDS Sputw3181_2895 NC_008750.1 3323072 3323545 R KEGG: shm:Shewmr7_0725 hypothetical protein; hypothetical protein complement(3323072..3323545) Shewanella sp. W3-18-1 4658899 YP_964267.1 CDS Sputw3181_2896 NC_008750.1 3323672 3324145 R KEGG: shm:Shewmr7_0724 putative phage gene; hypothetical protein complement(3323672..3324145) Shewanella sp. W3-18-1 4658900 YP_964268.1 CDS Sputw3181_2897 NC_008750.1 3324364 3324966 R KEGG: shm:Shewmr7_0723 hypothetical protein; hypothetical protein complement(3324364..3324966) Shewanella sp. W3-18-1 4658906 YP_964269.1 CDS Sputw3181_2898 NC_008750.1 3325044 3326087 R TIGRFAM: phage major capsid protein, P2 family; PFAM: phage major capsid protein, P2; KEGG: shm:Shewmr7_0722 phage major capsid protein, P2 family; P2 family phage major capsid protein complement(3325044..3326087) Shewanella sp. W3-18-1 4658920 YP_964270.1 CDS Sputw3181_2899 NC_008750.1 3326137 3327057 R PFAM: phage capsid scaffolding; KEGG: shm:Shewmr7_0721 phage capsid scaffolding; phage capsid scaffolding complement(3326137..3327057) Shewanella sp. W3-18-1 4658938 YP_964271.1 CDS Sputw3181_2900 NC_008750.1 3327261 3329069 D PFAM: protein of unknown function DUF264; putative terminase ATPase subunit; KEGG: shm:Shewmr7_0720 protein of unknown function DUF264; hypothetical protein 3327261..3329069 Shewanella sp. W3-18-1 4658941 YP_964272.1 CDS Sputw3181_2901 NC_008750.1 3329051 3330097 D TIGRFAM: phage portal protein, PBSX family; PFAM: phage portal protein; KEGG: shm:Shewmr7_0719 phage portal protein, PBSX family; PBSX family phage portal protein 3329051..3330097 Shewanella sp. W3-18-1 4659579 YP_964273.1 CDS Sputw3181_2902 NC_008750.1 3330135 3330491 R hypothetical protein complement(3330135..3330491) Shewanella sp. W3-18-1 4659184 YP_964274.1 CDS Sputw3181_2903 NC_008750.1 3330502 3330756 R KEGG: eba:ebA2310 conserved hypothetical protein, predicted prevent-host-death family protein; prevent-host-death family protein complement(3330502..3330756) Shewanella sp. W3-18-1 4659187 YP_964275.1 CDS Sputw3181_2904 NC_008750.1 3331010 3331258 D PFAM: phage transcriptional activator, Ogr/delta; KEGG: shm:Shewmr7_0718 phage transcriptional activator, Ogr/delta; phage transcriptional activator, Ogr/delta 3331010..3331258 Shewanella sp. W3-18-1 4659214 YP_964276.1 CDS Sputw3181_2905 NC_008750.1 3332204 3334441 R PFAM: bacteriophage replication gene A; KEGG: spt:SPA2623 putative phage gene; bacteriophage replication gene A complement(3332204..3334441) Shewanella sp. W3-18-1 4659224 YP_964277.1 CDS Sputw3181_2906 NC_008750.1 3334445 3335071 R KEGG: mag:amb2057 site-specific DNA methylase; hypothetical protein complement(3334445..3335071) Shewanella sp. W3-18-1 4659262 YP_964278.1 CDS Sputw3181_2907 NC_008750.1 3335068 3335361 R hypothetical protein complement(3335068..3335361) Shewanella sp. W3-18-1 4659266 YP_964279.1 CDS Sputw3181_2908 NC_008750.1 3335336 3335575 R KEGG: shm:Shewmr7_0705 hypothetical protein; hypothetical protein complement(3335336..3335575) Shewanella sp. W3-18-1 4659341 YP_964280.1 CDS Sputw3181_2909 NC_008750.1 3335819 3336385 R PFAM: phage regulatory CII family protein; KEGG: shm:Shewmr7_0702 phage regulatory CII family protein; phage regulatory CII family protein complement(3335819..3336385) Shewanella sp. W3-18-1 4659353 YP_964281.1 CDS Sputw3181_2910 NC_008750.1 3336501 3336701 R KEGG: yps:YPTB1770 putative regulator for prophage CP-933T (Escherichia coli O157:H7); putative regulator for prophage CP-933T complement(3336501..3336701) Shewanella sp. W3-18-1 4659388 YP_964282.1 CDS Sputw3181_2911 NC_008750.1 3336800 3337492 D PFAM: bacteriophage CI repressor; KEGG: shm:Shewmr7_0700 bacteriophage CI repressor; bacteriophage CI repressor 3336800..3337492 Shewanella sp. W3-18-1 4659403 YP_964283.1 CDS Sputw3181_2912 NC_008750.1 3337504 3337929 D KEGG: pat:Patl_0676 hypothetical protein; hypothetical protein 3337504..3337929 Shewanella sp. W3-18-1 4659412 YP_964284.1 CDS Sputw3181_2913 NC_008750.1 3338016 3338975 D KEGG: mmp:MMP0423 hypothetical protein; hypothetical protein 3338016..3338975 Shewanella sp. W3-18-1 4659437 YP_964285.1 CDS Sputw3181_2914 NC_008750.1 3338996 3339601 D hypothetical protein 3338996..3339601 Shewanella sp. W3-18-1 4659457 YP_964286.1 CDS Sputw3181_2915 NC_008750.1 3339611 3340228 D hypothetical protein 3339611..3340228 Shewanella sp. W3-18-1 4659466 YP_964287.1 CDS Sputw3181_2916 NC_008750.1 3340238 3341257 D PFAM: phage integrase family protein; KEGG: stm:STM2739 phage tail-like protein; phage integrase family protein 3340238..3341257 Shewanella sp. W3-18-1 4659479 YP_964288.1 CDS Sputw3181_2917 NC_008750.1 3341262 3342695 D PFAM: KAP P-loop domain protein; KEGG: she:Shewmr4_3681 kap P-loop domain protein; KAP P-loop domain-containing protein 3341262..3342695 Shewanella sp. W3-18-1 4659484 YP_964289.1 CDS Sputw3181_2918 NC_008750.1 3342792 3343172 D hypothetical protein 3342792..3343172 Shewanella sp. W3-18-1 4659491 YP_964290.1 CDS Sputw3181_2919 NC_008750.1 3343211 3344065 R PFAM: UspA domain protein; KEGG: sfr:Sfri_0791 UspA domain protein; UspA domain-containing protein complement(3343211..3344065) Shewanella sp. W3-18-1 4659494 YP_964291.1 CDS Sputw3181_2920 NC_008750.1 3344099 3345589 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sfr:Sfri_0790 sulphate transporter; sulfate transporter complement(3344099..3345589) Shewanella sp. W3-18-1 4659495 YP_964292.1 CDS Sputw3181_2921 NC_008750.1 3346030 3346305 R KEGG: hch:HCH_00506 hypothetical protein; hypothetical protein complement(3346030..3346305) Shewanella sp. W3-18-1 4659505 YP_964293.1 CDS Sputw3181_2922 NC_008750.1 3346437 3347675 R PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_4001 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3346437..3347675) Shewanella sp. W3-18-1 4659519 YP_964294.1 CDS Sputw3181_2923 NC_008750.1 3347681 3348691 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase complement(3347681..3348691) Shewanella sp. W3-18-1 4659525 YP_964295.1 CDS Sputw3181_2924 NC_008750.1 3348830 3349066 R KEGG: cps:CPS_3356 redox-active disulfide protein 2; redox-active disulfide protein 2 complement(3348830..3349066) Shewanella sp. W3-18-1 4659532 YP_964296.1 CDS Sputw3181_2925 NC_008750.1 3349078 3350076 R PFAM: permease; KEGG: sfr:Sfri_1725 permease; permease complement(3349078..3350076) Shewanella sp. W3-18-1 4659538 YP_964297.1 CDS Sputw3181_2926 NC_008750.1 3350168 3350515 R PFAM: regulatory protein, ArsR; KEGG: son:SO0532 arsenical resistence operon repressor; regulatory protein ArsR complement(3350168..3350515) Shewanella sp. W3-18-1 4659539 YP_964298.1 CDS Sputw3181_2927 NC_008750.1 3350508 3350924 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sfr:Sfri_4004 transcriptional regulator, ArsR family protein; protein tyrosine phosphatase complement(3350508..3350924) Shewanella sp. W3-18-1 4659153 YP_964299.1 CDS Sputw3181_2928 NC_008750.1 3351022 3351339 R PFAM: regulatory protein, ArsR; KEGG: son:SO0502 transcriptional regulator, ArsR family; regulatory protein ArsR complement(3351022..3351339) Shewanella sp. W3-18-1 4660288 YP_964300.1 CDS Sputw3181_2929 NC_008750.1 3351562 3352560 D PFAM: permease; KEGG: son:SO0503 hypothetical protein; permease 3351562..3352560 Shewanella sp. W3-18-1 4660222 YP_964301.1 CDS Sputw3181_2930 NC_008750.1 3352843 3353604 R PFAM: peptidase S24, S26A and S26B; SMART: helix-turn-helix domain protein; KEGG: aeh:Mlg_1999 putative phage repressor; putative phage repressor complement(3352843..3353604) Shewanella sp. W3-18-1 4659860 YP_964302.1 CDS Sputw3181_2931 NC_008750.1 3353750 3354073 D KEGG: sgl:SG0361 hypothetical protein; transcriptional regulator Nlp 3353750..3354073 Shewanella sp. W3-18-1 4659892 YP_964303.1 CDS Sputw3181_2932 NC_008750.1 3354191 3354679 D KEGG: cvi:CV2153 hypothetical protein; hypothetical protein 3354191..3354679 Shewanella sp. W3-18-1 4659893 YP_964304.1 CDS Sputw3181_2933 NC_008750.1 3354672 3356855 D PFAM: Integrase, catalytic region; MuA-transposase/repressor protein CI, DNA-binding; KEGG: pol:Bpro_3752 integrase, catalytic region; integrase catalytic subunit 3354672..3356855 Shewanella sp. W3-18-1 4659784 YP_964305.1 CDS Sputw3181_2934 NC_008750.1 3356900 3357619 D KEGG: pol:Bpro_3753 prophage MuSo1, DNA transposition protein, putative; prophage MuSo1, DNA transposition protein 3356900..3357619 Shewanella sp. W3-18-1 4659920 YP_964306.1 CDS Sputw3181_2935 NC_008750.1 3357625 3357921 D KEGG: son:SO0645 hypothetical protein; hypothetical protein 3357625..3357921 Shewanella sp. W3-18-1 4659567 YP_964307.1 CDS Sputw3181_2936 NC_008750.1 3357899 3358225 D KEGG: mag:amb0449 hypothetical protein; hypothetical protein 3357899..3358225 Shewanella sp. W3-18-1 4659926 YP_964308.1 CDS Sputw3181_2937 NC_008750.1 3358500 3358712 D KEGG: son:SO0647 hypothetical protein; hypothetical protein 3358500..3358712 Shewanella sp. W3-18-1 4659932 YP_964309.1 CDS Sputw3181_2938 NC_008750.1 3358717 3358959 D hypothetical protein 3358717..3358959 Shewanella sp. W3-18-1 4659935 YP_964310.1 CDS Sputw3181_2939 NC_008750.1 3359146 3359580 D KEGG: pat:Patl_1844 hypothetical protein; hypothetical protein 3359146..3359580 Shewanella sp. W3-18-1 4659937 YP_964311.1 CDS Sputw3181_2940 NC_008750.1 3359766 3360671 D KEGG: ecs:ECs4974 putative major head subunit; putative major head subunit 3359766..3360671 Shewanella sp. W3-18-1 4659943 YP_964312.1 CDS Sputw3181_2941 NC_008750.1 3360685 3361074 D KEGG: son:SO0652 prophage MuSo1, positive regulator of late transcription, putative; prophage MuSo1, positive regulator of late transcription 3360685..3361074 Shewanella sp. W3-18-1 4659964 YP_964313.1 CDS Sputw3181_2942 NC_008750.1 3361200 3361751 D hypothetical protein 3361200..3361751 Shewanella sp. W3-18-1 4659971 YP_964314.1 CDS Sputw3181_2943 NC_008750.1 3361910 3364774 D TIGRFAM: phage tape measure protein; KEGG: vvy:VV2164 phage-related minor tail protein; phage tape measure protein 3361910..3364774 Shewanella sp. W3-18-1 4659979 YP_964315.1 CDS Sputw3181_2944 NC_008750.1 3365727 3367154 D PFAM: glutathione synthase, ATP-binding; KEGG: vfi:VF0976 glutathione synthetase; glutathione synthase 3365727..3367154 Shewanella sp. W3-18-1 4660072 YP_964316.1 CDS Sputw3181_2945 NC_008750.1 3367226 3367930 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dsy:DSY4609 putative oxidoreductase iron-sulfur subunit; 4Fe-4S ferredoxin complement(3367226..3367930) Shewanella sp. W3-18-1 4660084 YP_964317.1 CDS Sputw3181_2946 NC_008750.1 3367942 3370506 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dsy:DSY4131 putative anaerobic dehydrogenase; molybdopterin oxidoreductase complement(3367942..3370506) Shewanella sp. W3-18-1 4660087 YP_964318.1 CDS Sputw3181_2947 NC_008750.1 3370879 3371241 D PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: dar:Daro_2638 arsenical resistance operon trans-acting repressor ArsD; arsenical resistance operon trans-acting repressor ArsD 3370879..3371241 Shewanella sp. W3-18-1 4660090 YP_964319.1 CDS Sputw3181_2948 NC_008750.1 3371276 3373048 D KEGG: dar:Daro_2637 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase; arsenite-activated ATPase ArsA 3371276..3373048 Shewanella sp. W3-18-1 4660102 YP_964320.1 CDS Sputw3181_2949 NC_008750.1 3373101 3374384 D TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: sbo:SBO_3500 arsenical pump membrane protein; arsenical pump membrane protein 3373101..3374384 Shewanella sp. W3-18-1 4660149 YP_964321.1 CDS Sputw3181_2950 NC_008750.1 3374464 3374919 D TIGRFAM: arsenate reductase; PFAM: arsenate reductase; KEGG: sbo:SBO_3501 arsenate reductase; arsenate reductase 3374464..3374919 Shewanella sp. W3-18-1 4660164 YP_964322.1 CDS Sputw3181_2951 NC_008750.1 3375003 3375707 R PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: bth:BT0800 hypothetical protein; cytochrome c biogenesis protein, transmembrane region complement(3375003..3375707) Shewanella sp. W3-18-1 4660166 YP_964323.1 CDS Sputw3181_2952 NC_008750.1 3375700 3376188 R KEGG: mhu:Mhun_0869 hypothetical protein; hypothetical protein complement(3375700..3376188) Shewanella sp. W3-18-1 4660180 YP_964324.1 CDS Sputw3181_2953 NC_008750.1 3376207 3376449 R TIGRFAM: redox-active disulfide protein 2; KEGG: plt:Plut_1705 redox-active disulfide protein 2; redox-active disulfide protein 2 complement(3376207..3376449) Shewanella sp. W3-18-1 4660183 YP_964325.1 CDS Sputw3181_2954 NC_008750.1 3376510 3376818 R PFAM: regulatory protein, ArsR; KEGG: dps:DP0944 similar to ArsR-family transcription regulator; regulatory protein ArsR complement(3376510..3376818) Shewanella sp. W3-18-1 4660259 YP_964326.1 CDS Sputw3181_2955 NC_008750.1 3377053 3378327 D PFAM: protein of unknown function DUF1063; KEGG: shm:Shewmr7_2876 protein of unknown function DUF1063; hypothetical protein 3377053..3378327 Shewanella sp. W3-18-1 4661035 YP_964327.1 CDS Sputw3181_2956 NC_008750.1 3378375 3379058 D PFAM: YheO domain protein; KEGG: son:SO1402 hypothetical protein; YheO domain-containing protein 3378375..3379058 Shewanella sp. W3-18-1 4660995 YP_964328.1 CDS Sputw3181_2957 NC_008750.1 3379112 3380713 R KEGG: shm:Shewmr7_2878 hypothetical protein; hypothetical protein complement(3379112..3380713) Shewanella sp. W3-18-1 4660951 YP_964329.1 CDS Sputw3181_2958 NC_008750.1 3380942 3381856 R PFAM: protein of unknown function DUF368; KEGG: shm:Shewmr7_2879 protein of unknown function DUF368; hypothetical protein complement(3380942..3381856) Shewanella sp. W3-18-1 4660923 YP_964330.1 CDS Sputw3181_2959 NC_008750.1 3382094 3382585 D KEGG: shm:Shewmr7_2880 hypothetical protein; hypothetical protein 3382094..3382585 Shewanella sp. W3-18-1 4660437 YP_964331.1 CDS Sputw3181_2960 NC_008750.1 3382720 3383157 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: son:SO1397 cytosine deaminase; cytosine deaminase 3382720..3383157 Shewanella sp. W3-18-1 4660506 YP_964332.1 CDS Sputw3181_2961 NC_008750.1 3383307 3384503 D PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: son:SO1396 hypothetical protein; hypothetical protein 3383307..3384503 Shewanella sp. W3-18-1 4660513 YP_964333.1 CDS Sputw3181_2962 NC_008750.1 3384531 3384959 D PFAM: protein of unknown function DUF1294; KEGG: son:SO1395 membrane protein,putative; hypothetical protein 3384531..3384959 Shewanella sp. W3-18-1 4660522 YP_964334.1 CDS Sputw3181_2963 NC_008750.1 3385045 3386388 R PFAM: short chain fatty acid transporter; KEGG: shm:Shewmr7_2886 short chain fatty acid transporter; short chain fatty acid transporter complement(3385045..3386388) Shewanella sp. W3-18-1 4660525 YP_964335.1 CDS Sputw3181_2964 NC_008750.1 3386630 3387100 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1390 peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 3386630..3387100 Shewanella sp. W3-18-1 4660628 YP_964336.1 CDS Sputw3181_2965 NC_008750.1 3387171 3387956 R PFAM: ROK family protein; KEGG: son:SO1389 ROK family protein; ROK family protein complement(3387171..3387956) Shewanella sp. W3-18-1 4660631 YP_964337.1 CDS Sputw3181_2966 NC_008750.1 3388322 3390109 D PFAM: peptidase M24; KEGG: shm:Shewmr7_2890 peptidase M24; peptidase M24 3388322..3390109 Shewanella sp. W3-18-1 4660635 YP_964338.1 CDS Sputw3181_2967 NC_008750.1 3390250 3390444 R KEGG: son:SO1387 HD domain protein; hypothetical protein complement(3390250..3390444) Shewanella sp. W3-18-1 4660692 YP_964339.1 CDS Sputw3181_2968 NC_008750.1 3391008 3392576 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: shm:Shewmr7_2891 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer 3391008..3392576 Shewanella sp. W3-18-1 4660693 YP_964340.1 CDS Sputw3181_2969 NC_008750.1 3392900 3394201 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO1383 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 3392900..3394201 Shewanella sp. W3-18-1 4660706 YP_964341.1 CDS Sputw3181_2970 NC_008750.1 3394320 3395210 R KEGG: shm:Shewmr7_2893 hypothetical protein; hypothetical protein complement(3394320..3395210) Shewanella sp. W3-18-1 4660722 YP_964342.1 CDS Sputw3181_2971 NC_008750.1 3395425 3396060 D KEGG: shm:Shewmr7_2895 hypothetical protein; hypothetical protein 3395425..3396060 Shewanella sp. W3-18-1 4660754 YP_964343.1 CDS Sputw3181_2972 NC_008750.1 3396159 3396476 R KEGG: son:SO1379 hypothetical protein; hypothetical protein complement(3396159..3396476) Shewanella sp. W3-18-1 4660777 YP_964344.1 CDS Sputw3181_2973 NC_008750.1 3396642 3397205 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: son:SO1378 ThiJ/PfpI family protein; PfpI family intracellular peptidase complement(3396642..3397205) Shewanella sp. W3-18-1 4660779 YP_964345.1 CDS Sputw3181_2974 NC_008750.1 3397382 3397903 R hypothetical protein complement(3397382..3397903) Shewanella sp. W3-18-1 4660785 YP_964346.1 CDS Sputw3181_2975 NC_008750.1 3397922 3400045 R PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: ecj:JW5272 predicted oxidoreductase; putative oxidoreductase complement(3397922..3400045) Shewanella sp. W3-18-1 4660799 YP_964347.1 CDS Sputw3181_2976 NC_008750.1 3400062 3400706 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sbo:SBO_1458 putative oxidoreductase, Fe-S subunit; 4Fe-4S ferredoxin complement(3400062..3400706) Shewanella sp. W3-18-1 4660813 YP_964348.1 CDS Sputw3181_2977 NC_008750.1 3401056 3403392 D KEGG: shm:Shewmr7_2577 decaheme cytochrome c; hypothetical protein 3401056..3403392 Shewanella sp. W3-18-1 4660835 YP_964349.1 CDS Sputw3181_2978 NC_008750.1 3403530 3405302 R PFAM: band 7 protein; KEGG: son:SO1377 hypothetical protein; hypothetical protein complement(3403530..3405302) Shewanella sp. W3-18-1 4660841 YP_964350.1 CDS Sputw3181_2979 NC_008750.1 3405339 3405971 R PFAM: protein of unknown function DUF1449; KEGG: shm:Shewmr7_2900 protein of unknown function DUF1449; hypothetical protein complement(3405339..3405971) Shewanella sp. W3-18-1 4660852 YP_964351.1 CDS Sputw3181_2980 NC_008750.1 3406360 3406851 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1374 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3406360..3406851 Shewanella sp. W3-18-1 4660856 YP_964352.1 CDS Sputw3181_2981 NC_008750.1 3406854 3407204 D PFAM: protein of unknown function DUF486; KEGG: she:Shewmr4_2821 protein of unknown function DUF486; hypothetical protein 3406854..3407204 Shewanella sp. W3-18-1 4660867 YP_964353.1 CDS Sputw3181_2982 NC_008750.1 3407223 3407480 D KEGG: shm:Shewmr7_2905 hypothetical protein; hypothetical protein 3407223..3407480 Shewanella sp. W3-18-1 4660868 YP_964354.1 CDS Sputw3181_2983 NC_008750.1 3407527 3408036 D PFAM: RDD domain containing protein; KEGG: she:Shewmr4_2823 RDD domain containing protein; RDD domain-containing protein 3407527..3408036 Shewanella sp. W3-18-1 4660876 YP_964355.1 CDS Sputw3181_2984 NC_008750.1 3408112 3409170 R PFAM: permease YjgP/YjgQ family protein; KEGG: shm:Shewmr7_2907 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease complement(3408112..3409170) Shewanella sp. W3-18-1 4660888 YP_964356.1 CDS Sputw3181_2985 NC_008750.1 3409167 3410279 R PFAM: permease YjgP/YjgQ family protein; KEGG: she:Shewmr4_2826 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease complement(3409167..3410279) Shewanella sp. W3-18-1 4660993 YP_964357.1 CDS Sputw3181_2986 NC_008750.1 3410536 3412044 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 3410536..3412044 Shewanella sp. W3-18-1 4660969 YP_964358.1 CDS Sputw3181_2987 NC_008750.1 3412394 3414373 D TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: she:Shewmr4_2828 chorismate mutase; chorismate mutase 3412394..3414373 Shewanella sp. W3-18-1 4660894 YP_964359.1 CDS Sputw3181_2988 NC_008750.1 3414502 3414837 R KEGG: she:Shewmr4_2830 hypothetical protein; hypothetical protein complement(3414502..3414837) Shewanella sp. W3-18-1 4660912 YP_964360.1 CDS Sputw3181_2989 NC_008750.1 3414979 3416094 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: shm:Shewmr7_2913 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit complement(3414979..3416094) Shewanella sp. W3-18-1 4661552 YP_964361.1 CDS Sputw3181_2990 NC_008750.1 3416171 3417835 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(3416171..3417835) Shewanella sp. W3-18-1 4661202 YP_964362.1 CDS tyrA NC_008750.1 3418053 3419204 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase complement(3418053..3419204) Shewanella sp. W3-18-1 4661057 YP_964363.1 CDS Sputw3181_2992 NC_008750.1 3419220 3420311 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3419220..3420311) Shewanella sp. W3-18-1 4661044 YP_964364.1 CDS rplS NC_008750.1 3420564 3420917 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(3420564..3420917) Shewanella sp. W3-18-1 4661779 YP_964365.1 CDS trmD NC_008750.1 3420952 3421698 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(3420952..3421698) Shewanella sp. W3-18-1 4661762 YP_964366.1 CDS rimM NC_008750.1 3421714 3422244 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(3421714..3422244) Shewanella sp. W3-18-1 4661734 YP_964367.1 CDS rpsP NC_008750.1 3422265 3422516 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(3422265..3422516) Shewanella sp. W3-18-1 4661706 YP_964368.1 CDS Sputw3181_2997 NC_008750.1 3422735 3424108 R with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein complement(3422735..3424108) Shewanella sp. W3-18-1 4661615 YP_964369.1 CDS Sputw3181_2998 NC_008750.1 3424437 3425225 D PFAM: cytochrome c assembly protein; KEGG: shm:Shewmr7_2922 cytochrome c assembly protein; cytochrome c assembly protein 3424437..3425225 Shewanella sp. W3-18-1 4661551 YP_964370.1 CDS Sputw3181_2999 NC_008750.1 3425326 3426597 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: she:Shewmr4_2841 protein of unknown function DUF21; hypothetical protein 3425326..3426597 Shewanella sp. W3-18-1 4661497 YP_964371.1 CDS Sputw3181_3000 NC_008750.1 3426662 3427186 R PFAM: protein of unknown function DUF962; KEGG: shm:Shewmr7_2925 protein of unknown function DUF962; hypothetical protein complement(3426662..3427186) Shewanella sp. W3-18-1 4661471 YP_964372.1 CDS acpS NC_008750.1 3427374 3427757 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(3427374..3427757) Shewanella sp. W3-18-1 4661414 YP_964373.1 CDS Sputw3181_3002 NC_008750.1 3427757 3428494 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(3427757..3428494) Shewanella sp. W3-18-1 4661399 YP_964374.1 CDS Sputw3181_3003 NC_008750.1 3428586 3429296 R TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: son:SO1350 DNA repair protein RecO; DNA repair protein RecO complement(3428586..3429296) Shewanella sp. W3-18-1 4661363 YP_964375.1 CDS era NC_008750.1 3429324 3430340 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(3429324..3430340) Shewanella sp. W3-18-1 4661384 YP_964376.1 CDS rnc NC_008750.1 3430337 3431017 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(3430337..3431017) Shewanella sp. W3-18-1 4661229 YP_964377.1 CDS Sputw3181_3006 NC_008750.1 3431019 3431936 R KEGG: shm:Shewmr7_2931 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I complement(3431019..3431936) Shewanella sp. W3-18-1 4661310 YP_964378.1 CDS Sputw3181_3007 NC_008750.1 3432109 3433899 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(3432109..3433899) Shewanella sp. W3-18-1 4661243 YP_964379.1 CDS Sputw3181_3008 NC_008750.1 3434066 3434539 R PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: she:Shewmr4_2851 positive regulator of sigma E, RseC/MucC; sigma E positive regulator RseC/MucC complement(3434066..3434539) Shewanella sp. W3-18-1 4661197 YP_964380.1 CDS Sputw3181_3009 NC_008750.1 3434550 3435482 R PFAM: MucB/RseB family protein; KEGG: son:SO1344 sigma-E factor regulatory protein RseB; sigma E regulatory protein MucB/RseB complement(3434550..3435482) Shewanella sp. W3-18-1 4660764 YP_964381.1 CDS Sputw3181_3010 NC_008750.1 3435495 3436115 R PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: she:Shewmr4_2853 anti sigma-E protein, RseA; anti sigma-E protein, RseA complement(3435495..3436115) Shewanella sp. W3-18-1 4660745 YP_964382.1 CDS Sputw3181_3011 NC_008750.1 3436142 3436720 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(3436142..3436720) Shewanella sp. W3-18-1 4660407 YP_964383.1 CDS Sputw3181_3012 NC_008750.1 3436910 3438523 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 3436910..3438523 Shewanella sp. W3-18-1 4660713 YP_964384.1 CDS Sputw3181_3013 NC_008750.1 3438560 3438931 R KEGG: son:SO1340 hypothetical protein; hypothetical protein complement(3438560..3438931) Shewanella sp. W3-18-1 4660399 YP_964385.1 CDS Sputw3181_3014 NC_008750.1 3438981 3439220 R PFAM: protein of unknown function DUF339; KEGG: shm:Shewmr7_2939 protein of unknown function DUF339; hypothetical protein complement(3438981..3439220) Shewanella sp. W3-18-1 4660395 YP_964386.1 CDS nhaR NC_008750.1 3439315 3440223 R Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR complement(3439315..3440223) Shewanella sp. W3-18-1 4660664 YP_964387.1 CDS Sputw3181_3016 NC_008750.1 3440331 3440717 R KEGG: son:SO1337 hypothetical protein; hypothetical protein complement(3440331..3440717) Shewanella sp. W3-18-1 4660621 YP_964388.1 CDS nhaA NC_008750.1 3440720 3441889 R exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter complement(3440720..3441889) Shewanella sp. W3-18-1 4660379 YP_964389.1 CDS thyA NC_008750.1 3442006 3442800 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(3442006..3442800) Shewanella sp. W3-18-1 4660368 YP_964390.1 CDS Sputw3181_3019 NC_008750.1 3442800 3443606 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(3442800..3443606) Shewanella sp. W3-18-1 4660571 YP_964391.1 CDS Sputw3181_3020 NC_008750.1 3443646 3444446 R PFAM: protein of unknown function DUF81; KEGG: son:SO1333 hypothetical protein; hypothetical protein complement(3443646..3444446) Shewanella sp. W3-18-1 4660320 YP_964392.1 CDS Sputw3181_3021 NC_008750.1 3444505 3446739 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: she:Shewmr4_2864 PTSINtr with GAF domain, PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP complement(3444505..3446739) Shewanella sp. W3-18-1 4660325 YP_964393.1 CDS Sputw3181_3022 NC_008750.1 3446762 3447286 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(3446762..3447286) Shewanella sp. W3-18-1 4660315 YP_964394.1 CDS Sputw3181_3023 NC_008750.1 3447974 3448645 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3447974..3448645 Shewanella sp. W3-18-1 4660227 YP_964395.1 CDS Sputw3181_3024 NC_008750.1 3448768 3449835 D KEGG: shm:Shewmr7_2949 putative adenylate/guanylate cyclase; putative adenylate/guanylate cyclase 3448768..3449835 Shewanella sp. W3-18-1 4660246 YP_964396.1 CDS Sputw3181_3025 NC_008750.1 3449890 3450801 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2950 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3449890..3450801) Shewanella sp. W3-18-1 4660255 YP_964397.1 CDS Sputw3181_3026 NC_008750.1 3451167 3451532 R PFAM: Hpt domain protein; KEGG: shm:Shewmr7_2951 Hpt protein; Hpt protein complement(3451167..3451532) Shewanella sp. W3-18-1 4660451 YP_964398.1 CDS Sputw3181_3027 NC_008750.1 3451723 3452652 R KEGG: shm:Shewmr7_2952 conserved hypothetical radical SAM protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; putative radical SAM protein complement(3451723..3452652) Shewanella sp. W3-18-1 4660296 YP_964399.1 CDS gltB NC_008750.1 3453237 3457685 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3453237..3457685 Shewanella sp. W3-18-1 4660066 YP_964400.1 CDS gltD NC_008750.1 3457692 3459098 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3457692..3459098 Shewanella sp. W3-18-1 4660055 YP_964401.1 CDS Sputw3181_3030 NC_008750.1 3459430 3460125 D PFAM: purine and other phosphorylases, family 1; KEGG: she:Shewmr4_2874 methylthioadenosine nucleosidase; adenosylhomocysteine nucleosidase 3459430..3460125 Shewanella sp. W3-18-1 4660039 YP_964402.1 CDS Sputw3181_3031 NC_008750.1 3460163 3461152 D PFAM: cobalamin biosynthesis protein CbiB; KEGG: son:SO1321 CobD-related protein; cobalamin biosynthesis protein CbiB 3460163..3461152 Shewanella sp. W3-18-1 4660016 YP_964403.1 CDS Sputw3181_3032 NC_008750.1 3461208 3461585 D KEGG: shm:Shewmr7_2958 hypothetical protein; hypothetical protein 3461208..3461585 Shewanella sp. W3-18-1 4659822 YP_964404.1 CDS Sputw3181_3033 NC_008750.1 3461582 3462208 D PFAM: protein of unknown function UPF0126; KEGG: shm:Shewmr7_2959 protein of unknown function UPF0126; hypothetical protein 3461582..3462208 Shewanella sp. W3-18-1 4659794 YP_964405.1 CDS Sputw3181_3034 NC_008750.1 3462240 3462701 D KEGG: she:Shewmr4_2878 hypothetical protein; hypothetical protein 3462240..3462701 Shewanella sp. W3-18-1 4659939 YP_964406.1 CDS Sputw3181_3035 NC_008750.1 3462822 3463250 D KEGG: son:SO1317 hypothetical protein; hypothetical protein 3462822..3463250 Shewanella sp. W3-18-1 4659589 YP_964407.1 CDS Sputw3181_3036 NC_008750.1 3463373 3464566 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(3463373..3464566) Shewanella sp. W3-18-1 4659631 YP_964408.1 CDS Sputw3181_3037 NC_008750.1 3464693 3466099 D PFAM: peptidase M23B; Opacity-associated protein A, N-terminal domain protein; KEGG: she:Shewmr4_2881 peptidase M23B; peptidase M23B 3464693..3466099 Shewanella sp. W3-18-1 4659633 YP_964409.1 CDS anmK NC_008750.1 3466121 3467230 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 3466121..3467230 Shewanella sp. W3-18-1 4659643 YP_964410.1 CDS Sputw3181_3039 NC_008750.1 3467484 3467864 D KEGG: shm:Shewmr7_2969 hypothetical protein; hypothetical protein 3467484..3467864 Shewanella sp. W3-18-1 4659759 YP_964411.1 CDS Sputw3181_3040 NC_008750.1 3467893 3468336 D KEGG: she:Shewmr4_2888 hypothetical protein; hypothetical protein 3467893..3468336 Shewanella sp. W3-18-1 4659770 YP_964412.1 CDS Sputw3181_3041 NC_008750.1 3468435 3468785 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(3468435..3468785) Shewanella sp. W3-18-1 4659862 YP_964413.1 CDS Sputw3181_3042 NC_008750.1 3468778 3469584 R KEGG: she:Shewmr4_2890 hypothetical protein; hypothetical protein complement(3468778..3469584) Shewanella sp. W3-18-1 4659806 YP_964414.1 CDS Sputw3181_3043 NC_008750.1 3469657 3471381 D PFAM: Cl- channel, voltage-gated family protein; KEGG: shm:Shewmr7_2973 Cl-channel, voltage-gated family protein; Cl- channel voltage-gated family protein 3469657..3471381 Shewanella sp. W3-18-1 4661132 YP_964415.1 CDS Sputw3181_3044 NC_008750.1 3471605 3472624 D Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase 3471605..3472624 Shewanella sp. W3-18-1 4659399 YP_964416.1 CDS Sputw3181_3045 NC_008750.1 3472651 3473943 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3472651..3473943 Shewanella sp. W3-18-1 4659361 YP_964417.1 CDS Sputw3181_3046 NC_008750.1 3474357 3475604 D PFAM: Citrate transporter; KEGG: she:Shewmr4_2894 citrate transporter; citrate transporter 3474357..3475604 Shewanella sp. W3-18-1 4659116 YP_964418.1 CDS Sputw3181_3047 NC_008750.1 3475665 3476732 R KEGG: she:Shewmr4_2895 general secretion pathway protein B; general secretion pathway protein B complement(3475665..3476732) Shewanella sp. W3-18-1 4659300 YP_964419.1 CDS Sputw3181_3048 NC_008750.1 3476732 3478411 R PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: she:Shewmr4_2896 peptidoglycan-binding domain 1 protein; peptidoglycan binding domain-containing protein complement(3476732..3478411) Shewanella sp. W3-18-1 4659097 YP_964420.1 CDS Sputw3181_3049 NC_008750.1 3478566 3479828 D PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: shm:Shewmr7_2979 metal dependent phosphohydrolase; metal dependent phosphohydrolase 3478566..3479828 Shewanella sp. W3-18-1 4659259 YP_964421.1 CDS Sputw3181_3050 NC_008750.1 3480075 3480341 D KEGG: shm:Shewmr7_2980 major outer membrane lipoprotein, putative; major outer membrane lipoprotein 3480075..3480341 Shewanella sp. W3-18-1 4659060 YP_964422.1 CDS Sputw3181_3051 NC_008750.1 3480547 3481404 R KEGG: son:SO1294 ribosomal RNA large subunit methyltransferase A, putative; ribosomal RNA large subunit methyltransferase A complement(3480547..3481404) Shewanella sp. W3-18-1 4658600 YP_964423.1 CDS Sputw3181_3052 NC_008750.1 3481489 3482289 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(3481489..3482289) Shewanella sp. W3-18-1 4659001 YP_964424.1 CDS Sputw3181_3053 NC_008750.1 3482308 3482811 R TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: she:Shewmr4_2901 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(3482308..3482811) Shewanella sp. W3-18-1 4659177 YP_964425.1 CDS Sputw3181_3054 NC_008750.1 3482896 3483246 R TIGRFAM: dihydroneopterin aldolase; KEGG: shm:Shewmr7_2984 dihydroneopterin aldolase; dihydroneopterin aldolase complement(3482896..3483246) Shewanella sp. W3-18-1 4659176 YP_964426.1 CDS Sputw3181_3055 NC_008750.1 3483515 3484126 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 3483515..3484126 Shewanella sp. W3-18-1 4659173 YP_964427.1 CDS Sputw3181_3056 NC_008750.1 3484205 3485221 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(3484205..3485221) Shewanella sp. W3-18-1 4659053 YP_964428.1 CDS rpsU NC_008750.1 3485440 3485655 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3485440..3485655 Shewanella sp. W3-18-1 4659161 YP_964429.1 CDS Sputw3181_3058 NC_008750.1 3485662 3486105 D PFAM: GatB/Yqey domain protein; KEGG: she:Shewmr4_2906 GatB/YqeY domain protein; GatB/Yqey domain-containing protein 3485662..3486105 Shewanella sp. W3-18-1 4661264 YP_964430.1 CDS Sputw3181_3059 NC_008750.1 3486189 3487913 D KEGG: shm:Shewmr7_2989 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase DnaG, DnaB-binding; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase 3486189..3487913 Shewanella sp. W3-18-1 4658855 YP_964431.1 CDS Sputw3181_3060 NC_008750.1 3488044 3489894 D TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: she:Shewmr4_2908 RNA polymerase, sigma 70 subunit, RpoD; RpoD family RNA polymerase sigma factor 3488044..3489894 Shewanella sp. W3-18-1 4658817 YP_964432.1 CDS Sputw3181_3061 NC_008750.1 3490395 3492515 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_2991 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3490395..3492515) Shewanella sp. W3-18-1 4661812 YP_964433.1 CDS Sputw3181_3062 NC_008750.1 3492775 3494415 D TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_2992 amino acid/peptide transporter; amino acid/peptide transporter 3492775..3494415 Shewanella sp. W3-18-1 4658764 YP_964434.1 CDS Sputw3181_3063 NC_008750.1 3494938 3495945 D PFAM: luciferase family protein; KEGG: she:Shewmr4_2911 luciferase family protein; luciferase family protein 3494938..3495945 Shewanella sp. W3-18-1 4658552 YP_964435.1 CDS Sputw3181_3064 NC_008750.1 3496092 3497369 R catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase complement(3496092..3497369) Shewanella sp. W3-18-1 4660896 YP_964436.1 CDS Sputw3181_3065 NC_008750.1 3497402 3498850 R KEGG: son:SO1275 succinate-semialdehyde dehydrogenase (NADP+); TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate-semialdehyde dehydrogenase complement(3497402..3498850) Shewanella sp. W3-18-1 4658709 YP_964437.1 CDS Sputw3181_3066 NC_008750.1 3498901 3500187 R PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_2996 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(3498901..3500187) Shewanella sp. W3-18-1 4658369 YP_964438.1 CDS Sputw3181_3067 NC_008750.1 3500445 3501260 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2997 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3500445..3501260) Shewanella sp. W3-18-1 4658451 YP_964439.1 CDS Sputw3181_3068 NC_008750.1 3501257 3502162 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2998 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3501257..3502162) Shewanella sp. W3-18-1 4658474 YP_964440.1 CDS Sputw3181_3069 NC_008750.1 3502159 3503295 R KEGG: shm:Shewmr7_2999 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(3502159..3503295) Shewanella sp. W3-18-1 4661335 YP_964441.1 CDS Sputw3181_3070 NC_008750.1 3503471 3504571 R PFAM: extracellular solute-binding protein, family 1; KEGG: she:Shewmr4_2918 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(3503471..3504571) Shewanella sp. W3-18-1 4658659 YP_964442.1 CDS Sputw3181_3071 NC_008750.1 3505192 3506547 R PFAM: glutamine synthetase, catalytic region; KEGG: she:Shewmr4_2919 glutamate--ammonia ligase; glutamate--ammonia ligase complement(3505192..3506547) Shewanella sp. W3-18-1 4658586 YP_964443.1 CDS Sputw3181_3072 NC_008750.1 3506550 3507311 R PFAM: peptidase C26; KEGG: she:Shewmr4_2920 peptidase C26; peptidase C26 complement(3506550..3507311) Shewanella sp. W3-18-1 4658200 YP_964444.1 CDS Sputw3181_3073 NC_008750.1 3507719 3508267 R PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: son:SO1265 transcriptional regulator, putative; XRE family transcriptional regulator complement(3507719..3508267) Shewanella sp. W3-18-1 4658164 YP_964445.1 CDS Sputw3181_3074 NC_008750.1 3508504 3509811 D PFAM: FAD dependent oxidoreductase; KEGG: son:SO1264 hypothetical oxidoreductase; FAD dependent oxidoreductase 3508504..3509811 Shewanella sp. W3-18-1 4657730 YP_964446.1 CDS Sputw3181_3075 NC_008750.1 3509938 3510447 R KEGG: son:SO1262 hypothetical protein; hypothetical protein complement(3509938..3510447) Shewanella sp. W3-18-1 4658101 YP_964447.1 CDS Sputw3181_3076 NC_008750.1 3510507 3511364 R PFAM: Rhodanese domain protein; KEGG: son:SO1261 mercaptopyruvate sulfurtransferase; 3-mercaptopyruvate sulfurtransferase complement(3510507..3511364) Shewanella sp. W3-18-1 4658094 YP_964448.1 CDS Sputw3181_3077 NC_008750.1 3511558 3511971 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: shm:Shewmr7_3007 rare lipoprotein A; rare lipoprotein A complement(3511558..3511971) Shewanella sp. W3-18-1 4657714 YP_964449.1 CDS Sputw3181_3078 NC_008750.1 3512715 3513107 R KEGG: xcv:XCV0132 putative secreted protein; hypothetical protein complement(3512715..3513107) Shewanella sp. W3-18-1 4658013 YP_964450.1 CDS Sputw3181_3079 NC_008750.1 3514297 3515793 R PFAM: aldehyde dehydrogenase; KEGG: she:Shewmr4_2926 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase complement(3514297..3515793) Shewanella sp. W3-18-1 4657695 YP_964451.1 CDS Sputw3181_3080 NC_008750.1 3516074 3517426 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 3516074..3517426 Shewanella sp. W3-18-1 4657683 YP_964452.1 CDS Sputw3181_3081 NC_008750.1 3517496 3518986 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: she:Shewmr4_2928 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 3517496..3518986 Shewanella sp. W3-18-1 4657682 YP_964453.1 CDS Sputw3181_3082 NC_008750.1 3519017 3519382 D PFAM: protein of unknown function DUF861, cupin_3; KEGG: shm:Shewmr7_3011 protein of unknown function DUF861, cupin_3; hypothetical protein 3519017..3519382 Shewanella sp. W3-18-1 4657884 YP_964454.1 CDS Sputw3181_3083 NC_008750.1 3519566 3520288 D KEGG: shm:Shewmr7_3012 hypothetical protein; hypothetical protein 3519566..3520288 Shewanella sp. W3-18-1 4657833 YP_964455.1 CDS Sputw3181_3084 NC_008750.1 3520412 3521710 R TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3503 glucose/galactose transporter; glucose/galactose transporter complement(3520412..3521710) Shewanella sp. W3-18-1 4657815 YP_964456.1 CDS Sputw3181_3087 NC_008750.1 3523339 3524508 R KEGG: she:Shewmr4_2933 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase complement(3523339..3524508) Shewanella sp. W3-18-1 4657788 YP_964457.1 CDS Sputw3181_3088 NC_008750.1 3524642 3525640 R PFAM: sugar isomerase (SIS); KEGG: shm:Shewmr7_3016 glutamine--fructose-6-phosphate transaminase (isomerizing); glutamine--fructose-6-phosphate transaminase (isomerizing) complement(3524642..3525640) Shewanella sp. W3-18-1 4657811 YP_964458.1 CDS Sputw3181_3089 NC_008750.1 3525658 3526614 R PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: shm:Shewmr7_3017 ATPase, BadF/BadG/BcrA/BcrD type; BadF/BadG/BcrA/BcrD type ATPase complement(3525658..3526614) Shewanella sp. W3-18-1 4657790 YP_964459.1 CDS Sputw3181_3090 NC_008750.1 3526815 3529517 R PFAM: glycoside hydrolase, family 20; Carbohydrate-binding, chitobiase/hexosaminidase-type domain protein; glycoside hydrolase, family 20 domain protein; KEGG: she:Shewmr4_2936 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase complement(3526815..3529517) Shewanella sp. W3-18-1 4657920 YP_964460.1 CDS Sputw3181_3091 NC_008750.1 3529772 3532390 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_3024 TonB-dependent receptor; TonB-dependent receptor complement(3529772..3532390) Shewanella sp. W3-18-1 4658334 YP_964461.1 CDS Sputw3181_3092 NC_008750.1 3532815 3533831 D PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: shm:Shewmr7_3025 transcriptional regulator, LacI family; regulatory protein, LacI 3532815..3533831 Shewanella sp. W3-18-1 4657825 YP_964462.1 CDS Sputw3181_3093 NC_008750.1 3533895 3535184 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: shm:Shewmr7_3026 NADH dehydrogenase; NADH dehydrogenase complement(3533895..3535184) Shewanella sp. W3-18-1 4657842 YP_964463.1 CDS Sputw3181_3094 NC_008750.1 3535372 3535710 R PFAM: nitrogen regulatory protein P-II; KEGG: shm:Shewmr7_3027 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(3535372..3535710) Shewanella sp. W3-18-1 4657848 YP_964464.1 CDS Sputw3181_3095 NC_008750.1 3535961 3536473 D KEGG: shm:Shewmr7_3028 methylation site containing protein; methylation site containing protein 3535961..3536473 Shewanella sp. W3-18-1 4657859 YP_964465.1 CDS Sputw3181_3096 NC_008750.1 3536624 3537109 D KEGG: shm:Shewmr7_3029 methylation site containing protein; methylation site containing protein 3536624..3537109 Shewanella sp. W3-18-1 4657877 YP_964466.1 CDS Sputw3181_3097 NC_008750.1 3537213 3537509 R KEGG: she:Shewmr4_2948 hypothetical protein; hypothetical protein complement(3537213..3537509) Shewanella sp. W3-18-1 4657892 YP_964467.1 CDS Sputw3181_3098 NC_008750.1 3537506 3537898 R KEGG: shm:Shewmr7_3031 methylation site containing protein; methylation site containing protein complement(3537506..3537898) Shewanella sp. W3-18-1 4657902 YP_964468.1 CDS Sputw3181_3099 NC_008750.1 3537905 3541402 R KEGG: she:Shewmr4_2950 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein complement(3537905..3541402) Shewanella sp. W3-18-1 4657928 YP_964469.1 CDS Sputw3181_3100 NC_008750.1 3541407 3541841 R KEGG: she:Shewmr4_2951 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX complement(3541407..3541841) Shewanella sp. W3-18-1 4657955 YP_964470.1 CDS Sputw3181_3101 NC_008750.1 3541854 3542837 R KEGG: shm:Shewmr7_3034 prepilin-type cleavage/methylation-like protein; prepilin-type cleavage/methylation-like protein complement(3541854..3542837) Shewanella sp. W3-18-1 4657963 YP_964471.1 CDS Sputw3181_3102 NC_008750.1 3542838 3543389 R TIGRFAM: type IV pilus modification protein PilV; KEGG: shm:Shewmr7_3035 type IV pilus modification protein PilV; type IV pilus modification protein PilV complement(3542838..3543389) Shewanella sp. W3-18-1 4657967 YP_964472.1 CDS ispH NC_008750.1 3543606 3544562 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(3543606..3544562) Shewanella sp. W3-18-1 4657978 YP_964473.1 CDS Sputw3181_3104 NC_008750.1 3544564 3544986 R KEGG: shm:Shewmr7_3037 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type complement(3544564..3544986) Shewanella sp. W3-18-1 4657985 YP_964474.1 CDS lspA NC_008750.1 3544983 3545498 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(3544983..3545498) Shewanella sp. W3-18-1 4658010 YP_964475.1 CDS ileS NC_008750.1 3545508 3548330 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(3545508..3548330) Shewanella sp. W3-18-1 4658046 YP_964476.1 CDS Sputw3181_3107 NC_008750.1 3548363 3549298 R KEGG: she:Shewmr4_2958 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; riboflavin biosynthesis protein RibF complement(3548363..3549298) Shewanella sp. W3-18-1 4658060 YP_964477.1 CDS Sputw3181_3108 NC_008750.1 3549364 3550923 R TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: she:Shewmr4_2959 integral membrane protein MviN; integral membrane protein MviN complement(3549364..3550923) Shewanella sp. W3-18-1 4658073 YP_964478.1 CDS rpsT NC_008750.1 3551176 3551442 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3551176..3551442 Shewanella sp. W3-18-1 4658098 YP_964479.1 CDS Sputw3181_3110 NC_008750.1 3551498 3551794 R PFAM: regulatory protein, ArsR; KEGG: shm:Shewmr7_3043 transcriptional regulator, ArsR family; regulatory protein ArsR complement(3551498..3551794) Shewanella sp. W3-18-1 4658140 YP_964480.1 CDS Sputw3181_3111 NC_008750.1 3551930 3553339 D PFAM: peptidase M20; peptidase M28; KEGG: she:Shewmr4_2962 peptidase M28; peptidase M28 3551930..3553339 Shewanella sp. W3-18-1 4658144 YP_964481.1 CDS Sputw3181_3112 NC_008750.1 3553399 3554172 R PFAM: protein of unknown function DUF328; KEGG: shm:Shewmr7_3045 protein of unknown function DUF328; hypothetical protein complement(3553399..3554172) Shewanella sp. W3-18-1 4658145 YP_964482.1 CDS Sputw3181_3113 NC_008750.1 3554301 3555746 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: she:Shewmr4_2964 amino acid carrier protein; amino acid carrier protein complement(3554301..3555746) Shewanella sp. W3-18-1 4658148 YP_964483.1 CDS Sputw3181_3114 NC_008750.1 3556174 3558540 D PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: son:SO3542 putative phosphoketolase; putative phosphoketolase 3556174..3558540 Shewanella sp. W3-18-1 4658157 YP_964484.1 CDS Sputw3181_3115 NC_008750.1 3558794 3559894 D PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: son:SO3545 OmpA family protein; OmpA/MotB domain-containing protein 3558794..3559894 Shewanella sp. W3-18-1 4658172 YP_964485.1 CDS Sputw3181_3116 NC_008750.1 3560144 3561100 D KEGG: shm:Shewmr7_3049 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 3560144..3561100 Shewanella sp. W3-18-1 4658193 YP_964486.1 CDS pgi NC_008750.1 3561121 3562758 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 3561121..3562758 Shewanella sp. W3-18-1 4658194 YP_964487.1 CDS Sputw3181_3118 NC_008750.1 3562975 3563160 D KEGG: shm:Shewmr7_3051 hypothetical protein; hypothetical protein 3562975..3563160 Shewanella sp. W3-18-1 4658205 YP_964488.1 CDS Sputw3181_3119 NC_008750.1 3563254 3563790 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: shm:Shewmr7_3052 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein complement(3563254..3563790) Shewanella sp. W3-18-1 4658230 YP_964489.1 CDS Sputw3181_3120 NC_008750.1 3564012 3564767 R KEGG: she:Shewmr4_2971 hypothetical protein; hypothetical protein complement(3564012..3564767) Shewanella sp. W3-18-1 4658229 YP_964490.1 CDS Sputw3181_3121 NC_008750.1 3564760 3565365 R PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: shm:Shewmr7_3054 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(3564760..3565365) Shewanella sp. W3-18-1 4658241 YP_964491.1 CDS Sputw3181_3122 NC_008750.1 3565452 3567368 R PFAM: von Willebrand factor, type A; KEGG: son:SO3552 von Willebrand factor type A domain protein; von Willebrand factor type A domain-containing protein complement(3565452..3567368) Shewanella sp. W3-18-1 4658244 YP_964492.1 CDS Sputw3181_3123 NC_008750.1 3567571 3569328 D putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM 3567571..3569328 Shewanella sp. W3-18-1 4658259 YP_964493.1 CDS Sputw3181_3124 NC_008750.1 3569608 3570099 D KEGG: she:Shewmr4_2975 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 3569608..3570099 Shewanella sp. W3-18-1 4658280 YP_964494.1 CDS Sputw3181_3125 NC_008750.1 3570099 3571196 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 3570099..3571196 Shewanella sp. W3-18-1 4658284 YP_964495.1 CDS Sputw3181_3126 NC_008750.1 3571349 3572617 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: shm:Shewmr7_3059 diguanylate cyclase with GAF sensor; diguanylate cyclase 3571349..3572617 Shewanella sp. W3-18-1 4658296 YP_964496.1 CDS Sputw3181_3127 NC_008750.1 3572710 3573327 R KEGG: she:Shewmr4_2978 hypothetical protein; hypothetical protein complement(3572710..3573327) Shewanella sp. W3-18-1 4658302 YP_964497.1 CDS Sputw3181_3128 NC_008750.1 3573335 3573778 R KEGG: shm:Shewmr7_3061 hypothetical protein; hypothetical protein complement(3573335..3573778) Shewanella sp. W3-18-1 4658320 YP_964498.1 CDS Sputw3181_3129 NC_008750.1 3573796 3575457 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(3573796..3575457) Shewanella sp. W3-18-1 4658399 YP_964499.1 CDS Sputw3181_3130 NC_008750.1 3575631 3578465 R PFAM: peptidase M16 domain protein; KEGG: she:Shewmr4_2981 peptidase M16 domain protein; peptidase M16 domain-containing protein complement(3575631..3578465) Shewanella sp. W3-18-1 4658408 YP_964500.1 CDS Sputw3181_3131 NC_008750.1 3578615 3579040 R KEGG: she:Shewmr4_2982 hypothetical protein; hypothetical protein complement(3578615..3579040) Shewanella sp. W3-18-1 4658433 YP_964501.1 CDS Sputw3181_3132 NC_008750.1 3579415 3580674 D PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_3065 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 3579415..3580674 Shewanella sp. W3-18-1 4658349 YP_964502.1 CDS Sputw3181_3133 NC_008750.1 3580848 3581015 D KEGG: shm:Shewmr7_3066 hypothetical protein; hypothetical protein 3580848..3581015 Shewanella sp. W3-18-1 4659005 YP_964503.1 CDS Sputw3181_3134 NC_008750.1 3581056 3582186 R KEGG: she:Shewmr4_2985 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; sodium ion-translocating decarboxylase subunit beta complement(3581056..3582186) Shewanella sp. W3-18-1 4658625 YP_964504.1 CDS Sputw3181_3135 NC_008750.1 3582195 3584021 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(3582195..3584021) Shewanella sp. W3-18-1 4658626 YP_964505.1 CDS Sputw3181_3136 NC_008750.1 3584033 3584299 R TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: she:Shewmr4_2987 sodium pump decarboxylases, gamma subunit; sodium pump decarboxylase subunit gamma complement(3584033..3584299) Shewanella sp. W3-18-1 4658642 YP_964506.1 CDS Sputw3181_3137 NC_008750.1 3584748 3585074 R KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB complement(3584748..3585074) Shewanella sp. W3-18-1 4658524 YP_964507.1 CDS Sputw3181_3138 NC_008750.1 3585361 3585609 R KEGG: son:SO0211 ISSod10, transposase OrfA; ISSod10, transposase OrfA complement(3585361..3585609) Shewanella sp. W3-18-1 4658656 YP_964508.1 CDS Sputw3181_3139 NC_008750.1 3591738 3592589 R KEGG: son:SO3575 CDP-diacylglycerol--serine O-phosphatidyltransferase, putative; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(3591738..3592589) Shewanella sp. W3-18-1 4659248 YP_964509.1 CDS Sputw3181_3140 NC_008750.1 3592685 3593152 D KEGG: shm:Shewmr7_3071 hypothetical protein; hypothetical protein 3592685..3593152 Shewanella sp. W3-18-1 4658690 YP_964510.1 CDS Sputw3181_3141 NC_008750.1 3593256 3595829 R PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3072 ATPase AAA-2 domain protein; ATPase complement(3593256..3595829) Shewanella sp. W3-18-1 4658705 YP_964511.1 CDS Sputw3181_3142 NC_008750.1 3596028 3596762 R PFAM: protein of unknown function DUF152; KEGG: son:SO3578 conserved hypothetical protein TIGR00726; hypothetical protein complement(3596028..3596762) Shewanella sp. W3-18-1 4658351 YP_964512.1 CDS Sputw3181_3143 NC_008750.1 3596763 3597737 R KEGG: shm:Shewmr7_3074 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(3596763..3597737) Shewanella sp. W3-18-1 4658754 YP_964513.1 CDS Sputw3181_3144 NC_008750.1 3597860 3598621 D KEGG: shm:Shewmr7_3075 putative lipoprotein; putative lipoprotein 3597860..3598621 Shewanella sp. W3-18-1 4658761 YP_964514.1 CDS Sputw3181_3145 NC_008750.1 3599373 3600998 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3076 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3599373..3600998 Shewanella sp. W3-18-1 4659197 YP_964515.1 CDS Sputw3181_3146 NC_008750.1 3601020 3601730 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: she:Shewmr4_2997 pseudouridine synthase, Rsu; pseudouridine synthase complement(3601020..3601730) Shewanella sp. W3-18-1 4658874 YP_964516.1 CDS Sputw3181_3147 NC_008750.1 3601792 3602424 R PFAM: Helix-turn-helix, type 11 domain protein; KEGG: she:Shewmr4_2998 putative transcriptional regulator; putative transcriptional regulator complement(3601792..3602424) Shewanella sp. W3-18-1 4658877 YP_964517.1 CDS Sputw3181_3148 NC_008750.1 3602571 3603185 D PFAM: NADPH-dependent FMN reductase; KEGG: shm:Shewmr7_3080 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 3602571..3603185 Shewanella sp. W3-18-1 4658880 YP_964518.1 CDS Sputw3181_3149 NC_008750.1 3603242 3603658 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: shm:Shewmr7_3081 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3603242..3603658 Shewanella sp. W3-18-1 4658891 YP_964519.1 CDS Sputw3181_3150 NC_008750.1 3603853 3604323 D KEGG: son:SO3587 hypothetical protein; hypothetical protein 3603853..3604323 Shewanella sp. W3-18-1 4658901 YP_964520.1 CDS Sputw3181_3151 NC_008750.1 3604377 3604940 R PFAM: GPR1/FUN34/yaaH family protein; KEGG: son:SO3588 gpr1/fun34/YaaH family protein; GPR1/FUN34/yaaH family protein complement(3604377..3604940) Shewanella sp. W3-18-1 4658905 YP_964521.1 CDS Sputw3181_3152 NC_008750.1 3605703 3605939 D KEGG: shm:Shewmr7_3084 hypothetical protein; hypothetical protein 3605703..3605939 Shewanella sp. W3-18-1 4658913 YP_964522.1 CDS Sputw3181_3153 NC_008750.1 3606318 3607184 D PFAM: MltA-interacting MipA family protein; KEGG: son:SO3592 putative outer membrane protein; MltA-interacting MipA family protein 3606318..3607184 Shewanella sp. W3-18-1 4658915 YP_964523.1 CDS Sputw3181_3154 NC_008750.1 3607190 3607603 D KEGG: shm:Shewmr7_3086 hypothetical protein; hypothetical protein 3607190..3607603 Shewanella sp. W3-18-1 4658922 YP_964524.1 CDS Sputw3181_3155 NC_008750.1 3607603 3608316 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3087 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3607603..3608316 Shewanella sp. W3-18-1 4658929 YP_964525.1 CDS Sputw3181_3156 NC_008750.1 3608326 3609594 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_3007 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3608326..3609594 Shewanella sp. W3-18-1 4659024 YP_964526.1 CDS Sputw3181_3157 NC_008750.1 3609681 3609989 R PFAM: protein of unknown function DUF1289; KEGG: shm:Shewmr7_3089 protein of unknown function DUF1289; hypothetical protein complement(3609681..3609989) Shewanella sp. W3-18-1 4659023 YP_964527.1 CDS Sputw3181_3158 NC_008750.1 3610161 3610697 D KEGG: she:Shewmr4_3009 hypothetical protein; hypothetical protein 3610161..3610697 Shewanella sp. W3-18-1 4659548 YP_964528.1 CDS cysM NC_008750.1 3610773 3611651 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(3610773..3611651) Shewanella sp. W3-18-1 4659587 YP_964529.1 CDS Sputw3181_3160 NC_008750.1 3611863 3612870 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: she:Shewmr4_3012 sulfate ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter substrate-binding protein 3611863..3612870 Shewanella sp. W3-18-1 4659183 YP_964530.1 CDS Sputw3181_3161 NC_008750.1 3613057 3613902 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO3600 sulfate ABC transporter, permease protein; sulfate ABC transporter permease 3613057..3613902 Shewanella sp. W3-18-1 4659191 YP_964531.1 CDS Sputw3181_3162 NC_008750.1 3613912 3614778 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO3601 sulfate ABC transporter, permease protein; sulfate ABC transporter permease 3613912..3614778 Shewanella sp. W3-18-1 4658975 YP_964532.1 CDS Sputw3181_3163 NC_008750.1 3614775 3615905 D KEGG: son:SO3602 sulfate ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 3614775..3615905 Shewanella sp. W3-18-1 4659061 YP_964533.1 CDS purT NC_008750.1 3616228 3617403 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 3616228..3617403 Shewanella sp. W3-18-1 4659212 YP_964534.1 CDS Sputw3181_3165 NC_008750.1 3617654 3619378 D PFAM: pseudouridine synthase; KEGG: sdn:Sden_0688 pseudouridine synthase; pseudouridine synthase 3617654..3619378 Shewanella sp. W3-18-1 4659215 YP_964535.1 CDS Sputw3181_3166 NC_008750.1 3619533 3621002 D KEGG: she:Shewmr4_3021 hypothetical protein; hypothetical protein 3619533..3621002 Shewanella sp. W3-18-1 4659231 YP_964536.1 CDS Sputw3181_3167 NC_008750.1 3620992 3623265 D PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_3103 tetratricopeptide TPR_2 repeat protein; hypothetical protein 3620992..3623265 Shewanella sp. W3-18-1 4659270 YP_964537.1 CDS Sputw3181_3168 NC_008750.1 3623967 3624782 D hypothetical protein 3623967..3624782 Shewanella sp. W3-18-1 4659272 YP_964538.1 CDS Sputw3181_3169 NC_008750.1 3624910 3625242 D hypothetical protein 3624910..3625242 Shewanella sp. W3-18-1 4659276 YP_964539.1 CDS Sputw3181_3170 NC_008750.1 3625622 3626575 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: she:Shewmr4_0913 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(3625622..3626575) Shewanella sp. W3-18-1 4659281 YP_964540.1 CDS Sputw3181_3171 NC_008750.1 3626600 3627238 R KEGG: shm:Shewmr7_3108 hypothetical protein; hypothetical protein complement(3626600..3627238) Shewanella sp. W3-18-1 4659296 YP_964541.1 CDS djlA NC_008750.1 3627280 3628068 R functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein complement(3627280..3628068) Shewanella sp. W3-18-1 4659308 YP_964542.1 CDS Sputw3181_3173 NC_008750.1 3628135 3628812 R PFAM: Nucleotidyl transferase; KEGG: son:SO3634 nucleotidyltransferase family protein; nucleotidyl transferase complement(3628135..3628812) Shewanella sp. W3-18-1 4659311 YP_964543.1 CDS Sputw3181_3174 NC_008750.1 3628813 3629892 R PFAM: aminoglycoside phosphotransferase; KEGG: she:Shewmr4_0909 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(3628813..3629892) Shewanella sp. W3-18-1 4659319 YP_964544.1 CDS Sputw3181_3175 NC_008750.1 3630009 3632306 D PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: shm:Shewmr7_3112 organic solvent tolerance protein; organic solvent tolerance protein 3630009..3632306 Shewanella sp. W3-18-1 4659340 YP_964545.1 CDS Sputw3181_3176 NC_008750.1 3632550 3633854 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: she:Shewmr4_0907 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3632550..3633854 Shewanella sp. W3-18-1 4659344 YP_964546.1 CDS pdxA NC_008750.1 3633861 3634847 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3633861..3634847 Shewanella sp. W3-18-1 4659348 YP_964547.1 CDS ksgA NC_008750.1 3634863 3635669 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3634863..3635669 Shewanella sp. W3-18-1 4659372 YP_964548.1 CDS apaG NC_008750.1 3635721 3636101 D protein associated with Co2+ and Mg2+ efflux; ApaG protein 3635721..3636101 Shewanella sp. W3-18-1 4659398 YP_964549.1 CDS apaH NC_008750.1 3636123 3636947 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 3636123..3636947 Shewanella sp. W3-18-1 4659418 YP_964550.1 CDS Sputw3181_3181 NC_008750.1 3637043 3639064 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_0902 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3637043..3639064 Shewanella sp. W3-18-1 4659433 YP_964551.1 CDS Sputw3181_3182 NC_008750.1 3639248 3639664 R KEGG: son:SO3645 hypothetical protein; hypothetical protein complement(3639248..3639664) Shewanella sp. W3-18-1 4659461 YP_964552.1 CDS Sputw3181_3183 NC_008750.1 3639880 3640362 R PFAM: dihydrofolate reductase region; KEGG: shm:Shewmr7_3120 dihydrofolate reductase; dihydrofolate reductase complement(3639880..3640362) Shewanella sp. W3-18-1 4659498 YP_964553.1 CDS Sputw3181_3184 NC_008750.1 3640392 3640865 R KEGG: son:SO3647 hypothetical protein; hypothetical protein complement(3640392..3640865) Shewanella sp. W3-18-1 4659511 YP_964554.1 CDS Sputw3181_3185 NC_008750.1 3640862 3641623 R PFAM: protein of unknown function DUF1212; KEGG: she:Shewmr4_0898 protein of unknown function DUF1212; hypothetical protein complement(3640862..3641623) Shewanella sp. W3-18-1 4659533 YP_964555.1 CDS obgE NC_008750.1 3641651 3642817 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3641651..3642817) Shewanella sp. W3-18-1 4659537 YP_964556.1 CDS rpmA NC_008750.1 3643033 3643287 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3643033..3643287) Shewanella sp. W3-18-1 4659549 YP_964557.1 CDS rplU NC_008750.1 3643302 3643613 R PFAM: ribosomal protein L21; KEGG: sdn:Sden_2927 ribosomal protein L21; 50S ribosomal protein L21 complement(3643302..3643613) Shewanella sp. W3-18-1 4659595 YP_964558.1 CDS Sputw3181_3189 NC_008750.1 3643865 3644860 D PFAM: Polyprenyl synthetase; KEGG: shm:Shewmr7_3126 trans-hexaprenyltranstransferase; trans-hexaprenyltranstransferase 3643865..3644860 Shewanella sp. W3-18-1 4659636 YP_964559.1 CDS Sputw3181_3190 NC_008750.1 3644923 3645588 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(3644923..3645588) Shewanella sp. W3-18-1 4659848 YP_964560.1 CDS Sputw3181_3191 NC_008750.1 3645772 3646314 D KEGG: son:SO3655 pilin, putative; pilin 3645772..3646314 Shewanella sp. W3-18-1 4659868 YP_964561.1 CDS Sputw3181_3192 NC_008750.1 3646388 3646711 D KEGG: son:SO3656 hypothetical protein; hypothetical protein 3646388..3646711 Shewanella sp. W3-18-1 4659744 YP_964562.1 CDS Sputw3181_3193 NC_008750.1 3646777 3647391 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_3132 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(3646777..3647391) Shewanella sp. W3-18-1 4659736 YP_964563.1 CDS Sputw3181_3194 NC_008750.1 3647574 3648173 D KEGG: she:Shewmr4_0888 thiol:disulfide interchange protein, putative; thiol:disulfide interchange protein 3647574..3648173 Shewanella sp. W3-18-1 4659733 YP_964564.1 CDS Sputw3181_3195 NC_008750.1 3648388 3649854 D KEGG: she:Shewmr4_0887 transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AAA ATPase; Fis family transcriptional regulator 3648388..3649854 Shewanella sp. W3-18-1 4659714 YP_964565.1 CDS Sputw3181_3196 NC_008750.1 3650025 3651488 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_3136 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3650025..3651488 Shewanella sp. W3-18-1 4659925 YP_964566.1 CDS Sputw3181_3197 NC_008750.1 3651978 3653579 D PFAM: AMP-dependent synthetase and ligase; KEGG: shm:Shewmr7_3139 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3651978..3653579 Shewanella sp. W3-18-1 4659928 YP_964567.1 CDS Sputw3181_3198 NC_008750.1 3653681 3655522 R KEGG: she:Shewmr4_0882 lipid A ABC exporter family, fused ATPase and inner membrane subunits; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein complement(3653681..3655522) Shewanella sp. W3-18-1 4659950 YP_964568.1 CDS Sputw3181_3199 NC_008750.1 3655714 3656271 R PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: son:SO3667 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(3655714..3656271) Shewanella sp. W3-18-1 4659965 YP_964569.1 CDS Sputw3181_3200 NC_008750.1 3656307 3656879 R PFAM: protein of unknown function DUF1008; KEGG: son:SO3668 hypothetical protein; hypothetical protein complement(3656307..3656879) Shewanella sp. W3-18-1 4659984 YP_964570.1 CDS Sputw3181_3201 NC_008750.1 3656906 3658996 R TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO3669 heme transport protein; TonB-dependent heme/hemoglobin receptor family protein complement(3656906..3658996) Shewanella sp. W3-18-1 4660001 YP_964571.1 CDS Sputw3181_3202 NC_008750.1 3659229 3660080 D TIGRFAM: TonB family protein; KEGG: son:SO3670 TonB1 protein; TonB family protein 3659229..3660080 Shewanella sp. W3-18-1 4660030 YP_964572.1 CDS Sputw3181_3203 NC_008750.1 3660143 3660877 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO3671 TonB system transport protein ExbB1; MotA/TolQ/ExbB proton channel 3660143..3660877 Shewanella sp. W3-18-1 4660042 YP_964573.1 CDS Sputw3181_3204 NC_008750.1 3660874 3661095 D KEGG: son:SO3672 TonB system transport protein ExbD1; hypothetical protein 3660874..3661095 Shewanella sp. W3-18-1 4660058 YP_964574.1 CDS Sputw3181_3205 NC_008750.1 3661392 3661796 D TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: sfr:Sfri_3492 transcriptional regulator, MerR family protein; MerR family transcriptional regulator 3661392..3661796 Shewanella sp. W3-18-1 4660068 YP_964575.1 CDS Sputw3181_3206 NC_008750.1 3661876 3662223 D PFAM: Mercuric transport protein MerT; KEGG: sfr:Sfri_3491 mercuric transport protein MerT; mercuric transporter MerT 3661876..3662223 Shewanella sp. W3-18-1 4660096 YP_964576.1 CDS Sputw3181_3207 NC_008750.1 3662276 3662551 D TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: sfr:Sfri_3490 mercuric transport protein periplasmic component; mercuric transport periplasmic protein 3662276..3662551 Shewanella sp. W3-18-1 4660097 YP_964577.1 CDS Sputw3181_3208 NC_008750.1 3662664 3664316 D TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: sfr:Sfri_3488 mercuric reductase; putative mercuric reductase 3662664..3664316 Shewanella sp. W3-18-1 4660111 YP_964578.1 CDS Sputw3181_3209 NC_008750.1 3664554 3665144 D PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: xac:XACb0071 Tn5045 resolvase; resolvase domain-containing protein 3664554..3665144 Shewanella sp. W3-18-1 4660119 YP_964579.1 CDS Sputw3181_3210 NC_008750.1 3665149 3666810 D KEGG: stm:PSLT044 putative integrase protein; putative integrase protein 3665149..3666810 Shewanella sp. W3-18-1 4660152 YP_964580.1 CDS Sputw3181_3211 NC_008750.1 3666800 3667771 D SMART: AAA ATPase; KEGG: psp:PSPPH_B0059 ExeA-like protein; ATPase AAA 3666800..3667771 Shewanella sp. W3-18-1 4660282 YP_964581.1 CDS Sputw3181_3212 NC_008750.1 3667781 3668122 D hypothetical protein 3667781..3668122 Shewanella sp. W3-18-1 4660266 YP_964582.1 CDS Sputw3181_3213 NC_008750.1 3668249 3668563 D KEGG: son:SO3672 TonB system transport protein ExbD1; TonB system transport protein ExbD1 3668249..3668563 Shewanella sp. W3-18-1 4660230 YP_964583.1 CDS Sputw3181_3214 NC_008750.1 3668649 3669695 D PFAM: periplasmic binding protein; KEGG: son:SO3673 hemin ABC transporter, periplasmic hemin-binding protein; periplasmic binding protein 3668649..3669695 Shewanella sp. W3-18-1 4660958 YP_964584.1 CDS Sputw3181_3215 NC_008750.1 3669707 3670738 D PFAM: transport system permease protein; KEGG: son:SO3674 hemin ABC transporter, permease protein; transport system permease 3669707..3670738 Shewanella sp. W3-18-1 4660901 YP_964585.1 CDS hmuV NC_008750.1 3670751 3671575 D with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 3670751..3671575 Shewanella sp. W3-18-1 4660433 YP_964586.1 CDS Sputw3181_3217 NC_008750.1 3671689 3672033 D KEGG: son:SO3676 hypothetical protein; hypothetical protein 3671689..3672033 Shewanella sp. W3-18-1 4660249 YP_964587.1 CDS Sputw3181_3218 NC_008750.1 3672295 3672588 D hypothetical protein 3672295..3672588 Shewanella sp. W3-18-1 4660464 YP_964588.1 CDS Sputw3181_3219 NC_008750.1 3673211 3674188 R PFAM: protein of unknown function DUF1568; KEGG: son:SO1890 hypothetical protein; hypothetical protein complement(3673211..3674188) Shewanella sp. W3-18-1 4660476 YP_964589.1 CDS Sputw3181_3220 NC_008750.1 3674595 3674771 R KEGG: sfr:Sfri_0964 hypothetical protein; hypothetical protein complement(3674595..3674771) Shewanella sp. W3-18-1 4660575 YP_964590.1 CDS Sputw3181_3221 NC_008750.1 3675055 3676593 R PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: shm:Shewmr7_0987 peptidase M17, leucyl aminopeptidase domain protein; peptidase M17, leucyl aminopeptidase domain-containing protein complement(3675055..3676593) Shewanella sp. W3-18-1 4660591 YP_964591.1 CDS Sputw3181_3222 NC_008750.1 3676798 3678273 D KEGG: she:Shewmr4_0948 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase 3676798..3678273 Shewanella sp. W3-18-1 4660618 YP_964592.1 CDS Sputw3181_3223 NC_008750.1 3678429 3679361 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: ilo:IL2191 predicted permease, DMT superfamily; hypothetical protein complement(3678429..3679361) Shewanella sp. W3-18-1 4660642 YP_964593.1 CDS Sputw3181_3224 NC_008750.1 3679454 3680353 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ilo:IL2190 transcriptional regulator, LysR family; LysR family transcriptional regulator 3679454..3680353 Shewanella sp. W3-18-1 4660652 YP_964594.1 CDS Sputw3181_3225 NC_008750.1 3680396 3681472 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(3680396..3681472) Shewanella sp. W3-18-1 4660675 YP_964595.1 CDS Sputw3181_3226 NC_008750.1 3681606 3683609 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_0946 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3681606..3683609) Shewanella sp. W3-18-1 4660676 YP_964596.1 CDS Sputw3181_3227 NC_008750.1 3683905 3684372 R TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: son:SO1112 bacterioferritin subunit 1; bacterioferritin complement(3683905..3684372) Shewanella sp. W3-18-1 4660719 YP_964597.1 CDS Sputw3181_3228 NC_008750.1 3684382 3684855 R TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: shm:Shewmr7_0982 bacterioferritin; bacterioferritin complement(3684382..3684855) Shewanella sp. W3-18-1 4660729 YP_964598.1 CDS Sputw3181_3229 NC_008750.1 3685101 3685325 R PFAM: protein of unknown function DUF539; KEGG: shm:Shewmr7_0981 protein of unknown function DUF539; hypothetical protein complement(3685101..3685325) Shewanella sp. W3-18-1 4660755 YP_964599.1 CDS Sputw3181_3230 NC_008750.1 3685337 3686380 R PFAM: ApbE family lipoprotein; KEGG: she:Shewmr4_0942 ApbE family lipoprotein; ApbE family lipoprotein complement(3685337..3686380) Shewanella sp. W3-18-1 4660767 YP_964600.1 CDS Sputw3181_3231 NC_008750.1 3686480 3687736 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(3686480..3687736) Shewanella sp. W3-18-1 4660414 YP_964601.1 CDS Sputw3181_3232 NC_008750.1 3687783 3688391 R Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E complement(3687783..3688391) Shewanella sp. W3-18-1 4660800 YP_964602.1 CDS Sputw3181_3233 NC_008750.1 3688397 3689029 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(3688397..3689029) Shewanella sp. W3-18-1 4660830 YP_964603.1 CDS Sputw3181_3234 NC_008750.1 3689029 3689817 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(3689029..3689817) Shewanella sp. W3-18-1 4660832 YP_964604.1 CDS Sputw3181_3235 NC_008750.1 3689810 3691009 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(3689810..3691009) Shewanella sp. W3-18-1 4660843 YP_964605.1 CDS Sputw3181_3236 NC_008750.1 3691009 3692343 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(3691009..3692343) Shewanella sp. W3-18-1 4660846 YP_964606.1 CDS Sputw3181_3237 NC_008750.1 3692745 3694796 R PFAM: TonB-dependent receptor; KEGG: she:Shewmr4_0935 TonB-dependent receptor; TonB-dependent receptor complement(3692745..3694796) Shewanella sp. W3-18-1 4660853 YP_964607.1 CDS Sputw3181_3238 NC_008750.1 3694962 3695471 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(3694962..3695471) Shewanella sp. W3-18-1 4660863 YP_964608.1 CDS Sputw3181_3239 NC_008750.1 3695598 3696707 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: shm:Shewmr7_0971 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter- DctP subunit complement(3695598..3696707) Shewanella sp. W3-18-1 4660963 YP_964609.1 CDS Sputw3181_3240 NC_008750.1 3696906 3697226 R PFAM: BolA family protein; KEGG: shm:Shewmr7_0970 BolA family protein; BolA family protein complement(3696906..3697226) Shewanella sp. W3-18-1 4660968 YP_964610.1 CDS Sputw3181_3241 NC_008750.1 3697352 3697966 R PFAM: 2OG-Fe(II) oxygenase; KEGG: shm:Shewmr7_0969 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase complement(3697352..3697966) Shewanella sp. W3-18-1 4661009 YP_964611.1 CDS Sputw3181_3242 NC_008750.1 3697969 3699186 D PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_0930 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 3697969..3699186 Shewanella sp. W3-18-1 4661013 YP_964612.1 CDS Sputw3181_3243 NC_008750.1 3699399 3702602 D KEGG: son:SO1096 hypothetical protein; hypothetical protein 3699399..3702602 Shewanella sp. W3-18-1 4661080 YP_964613.1 CDS Sputw3181_3244 NC_008750.1 3702723 3704021 R KEGG: shm:Shewmr7_0966 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(3702723..3704021) Shewanella sp. W3-18-1 4661033 YP_964614.1 CDS Sputw3181_3245 NC_008750.1 3704145 3705584 R PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: shm:Shewmr7_0965 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(3704145..3705584) Shewanella sp. W3-18-1 4661850 YP_964615.1 CDS Sputw3181_3246 NC_008750.1 3705741 3707075 D PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: shm:Shewmr7_0964 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 3705741..3707075 Shewanella sp. W3-18-1 4661759 YP_964616.1 CDS Sputw3181_3247 NC_008750.1 3707136 3708143 D TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: shm:Shewmr7_0963 cytochrome d ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II 3707136..3708143 Shewanella sp. W3-18-1 4661729 YP_964617.1 CDS Sputw3181_3248 NC_008750.1 3708844 3709251 D KEGG: son:SO1094 hypothetical transcription elongation factor; GreA/GreB family elongation factor 3708844..3709251 Shewanella sp. W3-18-1 4661731 YP_964618.1 CDS Sputw3181_3249 NC_008750.1 3709870 3710649 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: shm:Shewmr7_0961 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein complement(3709870..3710649) Shewanella sp. W3-18-1 4661675 YP_964619.1 CDS Sputw3181_3250 NC_008750.1 3710832 3711719 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1091 hypothetical protein; hypothetical protein 3710832..3711719 Shewanella sp. W3-18-1 4657765 YP_964620.1 CDS Sputw3181_3251 NC_008750.1 3711877 3713508 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_0924 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3711877..3713508 Shewanella sp. W3-18-1 4661531 YP_964621.1 CDS Sputw3181_3252 NC_008750.1 3713802 3715190 D PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_0954 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 3713802..3715190 Shewanella sp. W3-18-1 4660778 YP_964622.1 CDS Sputw3181_3253 NC_008750.1 3715368 3716066 D KEGG: she:Shewmr4_0918 hypothetical protein; hypothetical protein 3715368..3716066 Shewanella sp. W3-18-1 4660727 YP_964623.1 CDS Sputw3181_3254 NC_008750.1 3716075 3716803 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shm:Shewmr7_0952 pseudouridine synthase, Rsu; pseudouridine synthase 3716075..3716803 Shewanella sp. W3-18-1 4660710 YP_964624.1 CDS Sputw3181_3255 NC_008750.1 3717688 3718005 D KEGG: sal:Sala_1423 hypothetical protein; hypothetical protein 3717688..3718005 Shewanella sp. W3-18-1 4660703 YP_964625.1 CDS Sputw3181_3257 NC_008750.1 3718810 3720966 R KEGG: shm:Shewmr7_0949 hypothetical protein; hypothetical protein complement(3718810..3720966) Shewanella sp. W3-18-1 4659167 YP_964626.1 CDS Sputw3181_3258 NC_008750.1 3721229 3722416 R PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: shm:Shewmr7_0948 aromatic amino acid permease; aromatic amino acid permease complement(3721229..3722416) Shewanella sp. W3-18-1 4660665 YP_964627.1 CDS Sputw3181_3259 NC_008750.1 3723120 3723674 D PFAM: protein of unknown function UPF0016; KEGG: she:Shewmr4_3028 protein of unknown function UPF0016; hypothetical protein 3723120..3723674 Shewanella sp. W3-18-1 4660392 YP_964628.1 CDS Sputw3181_3260 NC_008750.1 3723876 3726149 D KEGG: son:SO1004 hypothetical protein; hypothetical protein 3723876..3726149 Shewanella sp. W3-18-1 4660646 YP_964629.1 CDS Sputw3181_3261 NC_008750.1 3726159 3727901 D KEGG: son:SO1003 hypothetical protein; hypothetical protein 3726159..3727901 Shewanella sp. W3-18-1 4660634 YP_964630.1 CDS Sputw3181_3262 NC_008750.1 3728558 3729655 D PFAM: sodium/calcium exchanger membrane region; KEGG: son:SO1001 calcium/proton antiporter; sodium/calcium exchanger membrane region 3728558..3729655 Shewanella sp. W3-18-1 4660371 YP_964631.1 CDS Sputw3181_3263 NC_008750.1 3729693 3731264 R PFAM: Rhomboid family protein; KEGG: son:SO1000 rhomboid family protein; rhomboid family protein complement(3729693..3731264) Shewanella sp. W3-18-1 4660910 YP_964632.1 CDS Sputw3181_3264 NC_008750.1 3731321 3731611 R KEGG: son:SO0973 hypothetical protein; hypothetical protein complement(3731321..3731611) Shewanella sp. W3-18-1 4660563 YP_964633.1 CDS Sputw3181_3265 NC_008750.1 3731672 3732202 R PFAM: Methyltransferase type 12; KEGG: son:SO0972 hypothetical protein; type 12 methyltransferase complement(3731672..3732202) Shewanella sp. W3-18-1 4660542 YP_964634.1 CDS Sputw3181_3266 NC_008750.1 3732202 3732612 R KEGG: she:Shewmr4_0809 hypothetical protein; hypothetical protein complement(3732202..3732612) Shewanella sp. W3-18-1 4660350 YP_964635.1 CDS Sputw3181_3267 NC_008750.1 3733119 3734912 D TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0970 fumarate reductase flavoprotein subunit precursor; flavocytochrome c 3733119..3734912 Shewanella sp. W3-18-1 4660334 YP_964636.1 CDS Sputw3181_3268 NC_008750.1 3735168 3736157 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: shm:Shewmr7_3216 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein; D-isomer specific 2-hydroxyacid dehydrogenase 3735168..3736157 Shewanella sp. W3-18-1 4660324 YP_964637.1 CDS Sputw3181_3269 NC_008750.1 3736226 3736963 D PFAM: dienelactone hydrolase; KEGG: she:Shewmr4_0806 dienelactone hydrolase; dienelactone hydrolase 3736226..3736963 Shewanella sp. W3-18-1 4660455 YP_964638.1 CDS Sputw3181_3270 NC_008750.1 3737015 3737302 D hypothetical protein 3737015..3737302 Shewanella sp. W3-18-1 4660292 YP_964639.1 CDS Sputw3181_3271 NC_008750.1 3737441 3737902 R hypothetical protein complement(3737441..3737902) Shewanella sp. W3-18-1 4660293 YP_964640.1 CDS Sputw3181_3272 NC_008750.1 3737998 3738441 R KEGG: psb:Psyr_4989 hypothetical protein; hypothetical protein complement(3737998..3738441) Shewanella sp. W3-18-1 4660294 YP_964641.1 CDS Sputw3181_3273 NC_008750.1 3738458 3739003 R KEGG: shm:Shewmr7_3219 hypothetical protein; hypothetical protein complement(3738458..3739003) Shewanella sp. W3-18-1 4660295 YP_964642.1 CDS Sputw3181_3274 NC_008750.1 3739107 3739850 D PFAM: Spermine synthase; KEGG: shm:Shewmr7_3220 spermine synthase; spermine synthase 3739107..3739850 Shewanella sp. W3-18-1 4660299 YP_964643.1 CDS Sputw3181_3275 NC_008750.1 3739940 3741496 D PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: shm:Shewmr7_3221 leucyl aminopeptidase; leucyl aminopeptidase 3739940..3741496 Shewanella sp. W3-18-1 4660300 YP_964644.1 CDS Sputw3181_3276 NC_008750.1 3741851 3742420 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO0958 alkyl hydroperoxide reductase, C subunit; alkyl hydroperoxide reductase 3741851..3742420 Shewanella sp. W3-18-1 4660301 YP_964645.1 CDS Sputw3181_3277 NC_008750.1 3742531 3744102 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutaredoxin; KEGG: son:SO0956 alkyl hydroperoxide reductase, F subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3742531..3744102 Shewanella sp. W3-18-1 4660303 YP_964646.1 CDS Sputw3181_3278 NC_008750.1 3744174 3744353 R KEGG: son:SO0955 hypothetical protein; hypothetical protein complement(3744174..3744353) Shewanella sp. W3-18-1 4660307 YP_964647.1 CDS Sputw3181_3279 NC_008750.1 3744413 3744832 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0954 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3744413..3744832) Shewanella sp. W3-18-1 4660308 YP_964648.1 CDS Sputw3181_3280 NC_008750.1 3744868 3745197 R KEGG: son:SO0953 hypothetical protein; hypothetical protein complement(3744868..3745197) Shewanella sp. W3-18-1 4660309 YP_964649.1 CDS Sputw3181_3281 NC_008750.1 3745221 3746975 R TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: shm:Shewmr7_3226 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ complement(3745221..3746975) Shewanella sp. W3-18-1 4660082 YP_964650.1 CDS Sputw3181_3282 NC_008750.1 3747039 3747764 R KEGG: shm:Shewmr7_3227 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC complement(3747039..3747764) Shewanella sp. W3-18-1 4660059 YP_964651.1 CDS Sputw3181_3283 NC_008750.1 3747898 3748800 R TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: shm:Shewmr7_3228 tyrosine recombinase XerD; tyrosine recombinase XerD complement(3747898..3748800) Shewanella sp. W3-18-1 4660031 YP_964652.1 CDS Sputw3181_3284 NC_008750.1 3748890 3750293 R PFAM: branched-chain amino acid transport system II carrier protein; KEGG: she:Shewmr4_0794 branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein complement(3748890..3750293) Shewanella sp. W3-18-1 4660006 YP_964653.1 CDS Sputw3181_3285 NC_008750.1 3750825 3751541 D PFAM: O-methyltransferase, family 3; Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_0793 methyltransferase small; type 12 methyltransferase 3750825..3751541 Shewanella sp. W3-18-1 4660003 YP_964654.1 CDS Sputw3181_3286 NC_008750.1 3751655 3752914 D facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 3751655..3752914 Shewanella sp. W3-18-1 4659974 YP_964655.1 CDS Sputw3181_3287 NC_008750.1 3753280 3754491 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_3234 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3753280..3754491 Shewanella sp. W3-18-1 4661638 YP_964656.1 CDS Sputw3181_3288 NC_008750.1 3754491 3757682 D PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3235 acriflavin resistance protein; acriflavin resistance protein 3754491..3757682 Shewanella sp. W3-18-1 4659803 YP_964657.1 CDS Sputw3181_3289 NC_008750.1 3757858 3758565 D PFAM: Radical SAM domain protein; KEGG: son:SO0944 hypothetical protein; radical SAM domain-containing protein 3757858..3758565 Shewanella sp. W3-18-1 4659958 YP_964658.1 CDS Sputw3181_3290 NC_008750.1 3758734 3760971 D KEGG: she:Shewmr4_0786 putative PAS/PAC sensor protein; putative PAS/PAC sensor protein 3758734..3760971 Shewanella sp. W3-18-1 4659786 YP_964659.1 CDS Sputw3181_3291 NC_008750.1 3760952 3762355 R KEGG: shm:Shewmr7_3238 hypothetical protein; hypothetical protein complement(3760952..3762355) Shewanella sp. W3-18-1 4659743 YP_964660.1 CDS Sputw3181_3292 NC_008750.1 3762451 3762981 R KEGG: she:Shewmr4_0784 hypothetical protein; hypothetical protein complement(3762451..3762981) Shewanella sp. W3-18-1 4659694 YP_964661.1 CDS Sputw3181_3293 NC_008750.1 3762974 3763717 R PFAM: transcriptional regulator domain protein; KEGG: son:SO0940 transcriptional regulator-related protein; transcriptional regulator CadC complement(3762974..3763717) Shewanella sp. W3-18-1 4659695 YP_964662.1 CDS Sputw3181_3294 NC_008750.1 3764164 3764985 D KEGG: shm:Shewmr7_3241 cytochrome c, putative; cytochrome c 3764164..3764985 Shewanella sp. W3-18-1 4659696 YP_964663.1 CDS Sputw3181_3295 NC_008750.1 3764996 3765526 D KEGG: she:Shewmr4_0781 hypothetical protein; hypothetical protein 3764996..3765526 Shewanella sp. W3-18-1 4659697 YP_964664.1 CDS Sputw3181_3296 NC_008750.1 3765614 3767050 R KEGG: she:Shewmr4_0778 Na+/H+ antiporter; Na+/H+ antiporter complement(3765614..3767050) Shewanella sp. W3-18-1 4659698 YP_964665.1 CDS Sputw3181_3297 NC_008750.1 3767264 3768001 R PFAM: protein of unknown function DUF481; KEGG: shm:Shewmr7_3246 protein of unknown function DUF481; hypothetical protein complement(3767264..3768001) Shewanella sp. W3-18-1 4659699 YP_964666.1 CDS Sputw3181_3298 NC_008750.1 3768198 3769265 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(3768198..3769265) Shewanella sp. W3-18-1 4659700 YP_964667.1 CDS pgk NC_008750.1 3769479 3770654 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(3769479..3770654) Shewanella sp. W3-18-1 4661007 YP_964668.1 CDS Sputw3181_3300 NC_008750.1 3770782 3771798 R NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase complement(3770782..3771798) Shewanella sp. W3-18-1 4659701 YP_964669.1 CDS Sputw3181_3301 NC_008750.1 3771915 3773909 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(3771915..3773909) Shewanella sp. W3-18-1 4659702 YP_964670.1 CDS Sputw3181_3302 NC_008750.1 3774388 3775539 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3774388..3775539 Shewanella sp. W3-18-1 4659704 YP_964671.1 CDS Sputw3181_3303 NC_008750.1 3775673 3776158 D KEGG: shm:Shewmr7_3252 hypothetical protein; hypothetical protein 3775673..3776158 Shewanella sp. W3-18-1 4659703 YP_964672.1 CDS Sputw3181_3304 NC_008750.1 3776769 3778271 R PFAM: transposase IS66; KEGG: pha:PSHAa0410 transposase; transposase IS66 complement(3776769..3778271) Shewanella sp. W3-18-1 4659705 YP_964673.1 CDS Sputw3181_3305 NC_008750.1 3778352 3778702 R PFAM: IS66 Orf2 family protein; KEGG: pha:PSHAa0409 hypothetical protein; IS66 Orf2 family protein complement(3778352..3778702) Shewanella sp. W3-18-1 4659706 YP_964674.1 CDS Sputw3181_3306 NC_008750.1 3778699 3779055 R hypothetical protein complement(3778699..3779055) Shewanella sp. W3-18-1 4659707 YP_964675.1 CDS Sputw3181_3307 NC_008750.1 3780671 3781705 D PFAM: protein of unknown function DUF1568; KEGG: shm:Shewmr7_1178 protein of unknown function DUF1568; hypothetical protein 3780671..3781705 Shewanella sp. W3-18-1 4659708 YP_964676.1 CDS Sputw3181_3308 NC_008750.1 3781860 3782210 R KEGG: shm:Shewmr7_3253 hypothetical protein; hypothetical protein complement(3781860..3782210) Shewanella sp. W3-18-1 4659709 YP_964677.1 CDS Sputw3181_3309 NC_008750.1 3782277 3782849 R KEGG: shm:Shewmr7_3255 acetyltransferase, GNAT family; acetyltransferase complement(3782277..3782849) Shewanella sp. W3-18-1 4659710 YP_964678.1 CDS Sputw3181_3310 NC_008750.1 3782934 3783158 R KEGG: she:Shewmr4_0766 hypothetical protein; hypothetical protein complement(3782934..3783158) Shewanella sp. W3-18-1 4659711 YP_964679.1 CDS Sputw3181_3311 NC_008750.1 3783230 3783646 D PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: shm:Shewmr7_3258 protein of unknown function DUF306, MetA and HslJ; hypothetical protein 3783230..3783646 Shewanella sp. W3-18-1 4659712 YP_964680.1 CDS Sputw3181_3312 NC_008750.1 3783746 3785077 R PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_3259 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(3783746..3785077) Shewanella sp. W3-18-1 4659713 YP_964681.1 CDS Sputw3181_3313 NC_008750.1 3785417 3785860 D PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_3261 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3785417..3785860 Shewanella sp. W3-18-1 4659716 YP_964682.1 CDS Sputw3181_3314 NC_008750.1 3785954 3787249 R PFAM: aromatic amino acid permease; KEGG: son:SO0919 serine transporter, putative; aromatic amino acid permease complement(3785954..3787249) Shewanella sp. W3-18-1 4659718 YP_964683.1 CDS Sputw3181_3315 NC_008750.1 3787716 3790280 R PFAM: peptidase S45, penicillin amidase; KEGG: shm:Shewmr7_3263 peptidase S45, penicillin amidase; peptidase S45, penicillin amidase complement(3787716..3790280) Shewanella sp. W3-18-1 4659719 YP_964684.1 CDS Sputw3181_3316 NC_008750.1 3790539 3791093 D pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 3790539..3791093 Shewanella sp. W3-18-1 4659720 YP_964685.1 CDS Sputw3181_3317 NC_008750.1 3791216 3792175 D PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; KEGG: shm:Shewmr7_3265 transcriptional regulator, MarR family with acetyltransferase activity; MarR family transcriptional regulator 3791216..3792175 Shewanella sp. W3-18-1 4659721 YP_964686.1 CDS Sputw3181_3318 NC_008750.1 3792510 3793790 D SMART: AAA ATPase; KEGG: rfr:Rfer_3382 hypothetical protein; ATPase AAA 3792510..3793790 Shewanella sp. W3-18-1 4659722 YP_964687.1 CDS Sputw3181_3319 NC_008750.1 3794003 3795214 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(3794003..3795214) Shewanella sp. W3-18-1 4659723 YP_964688.1 CDS Sputw3181_3320 NC_008750.1 3795298 3795906 R Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E complement(3795298..3795906) Shewanella sp. W3-18-1 4659726 YP_964689.1 CDS Sputw3181_3321 NC_008750.1 3795916 3796536 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(3795916..3796536) Shewanella sp. W3-18-1 4659725 YP_964690.1 CDS Sputw3181_3322 NC_008750.1 3796533 3797327 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(3796533..3797327) Shewanella sp. W3-18-1 4659724 YP_964691.1 CDS Sputw3181_3323 NC_008750.1 3797317 3798549 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(3797317..3798549) Shewanella sp. W3-18-1 4659727 YP_964692.1 CDS Sputw3181_3324 NC_008750.1 3798549 3799919 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(3798549..3799919) Shewanella sp. W3-18-1 4659728 YP_964693.1 CDS Sputw3181_3325 NC_008750.1 3800374 3801414 D PFAM: aldo/keto reductase; KEGG: shm:Shewmr7_3273 aldo/keto reductase; aldo/keto reductase 3800374..3801414 Shewanella sp. W3-18-1 4659729 YP_964694.1 CDS Sputw3181_3326 NC_008750.1 3801648 3802421 D PFAM: MltA-interacting MipA family protein; KEGG: sfr:Sfri_3058 MltA-interacting MipA family protein; MltA-interacting MipA family protein 3801648..3802421 Shewanella sp. W3-18-1 4659730 YP_964695.1 CDS Sputw3181_3327 NC_008750.1 3802443 3802901 D KEGG: sfr:Sfri_3059 hypothetical protein; hypothetical protein 3802443..3802901 Shewanella sp. W3-18-1 4659731 YP_964696.1 CDS Sputw3181_3328 NC_008750.1 3803017 3804312 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sdn:Sden_0558 ATP-binding region, ATPase-like protein; integral membrane sensor signal transduction histidine kinase complement(3803017..3804312) Shewanella sp. W3-18-1 4659732 YP_964697.1 CDS Sputw3181_3329 NC_008750.1 3804318 3804590 R PFAM: transcriptional regulator domain protein; KEGG: sdn:Sden_0557 response regulator receiver; response regulator receiver protein complement(3804318..3804590) Shewanella sp. W3-18-1 4659734 YP_964698.1 CDS Sputw3181_3330 NC_008750.1 3804596 3805291 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sdn:Sden_0557 response regulator receiver; two component transcriptional regulator complement(3804596..3805291) Shewanella sp. W3-18-1 4659735 YP_964699.1 CDS Sputw3181_3331 NC_008750.1 3805293 3805682 R KEGG: sfr:Sfri_3063 hypothetical protein; hypothetical protein complement(3805293..3805682) Shewanella sp. W3-18-1 4659737 YP_964700.1 CDS Sputw3181_3332 NC_008750.1 3805692 3806537 R PFAM: MltA-interacting MipA family protein; KEGG: sfr:Sfri_3064 MltA-interacting MipA family protein; MltA-interacting MipA family protein complement(3805692..3806537) Shewanella sp. W3-18-1 4659738 YP_964701.1 CDS Sputw3181_3333 NC_008750.1 3807004 3808317 D TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aminotransferase, class I and II; KEGG: son:SO3789 aminotransferase, class V; SufS subfamily cysteine desulfurase 3807004..3808317 Shewanella sp. W3-18-1 4659739 YP_964702.1 CDS Sputw3181_3334 NC_008750.1 3808392 3808838 D PFAM: Fe-S metabolism associated SufE; KEGG: shm:Shewmr7_0835 Fe-S metabolism associated SufE; Fe-S metabolism associated SufE 3808392..3808838 Shewanella sp. W3-18-1 4659740 YP_964703.1 CDS Sputw3181_3335 NC_008750.1 3808957 3810123 D PFAM: peptidase M19, renal dipeptidase; KEGG: shm:Shewmr7_0834 twin-arginine translocation pathway signal; peptidase M19 3808957..3810123 Shewanella sp. W3-18-1 4659741 YP_964704.1 CDS Sputw3181_3336 NC_008750.1 3810133 3810450 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: shm:Shewmr7_0832 cupin 2, conserved barrel domain protein; cupin complement(3810133..3810450) Shewanella sp. W3-18-1 4659742 YP_964705.1 CDS Sputw3181_3337 NC_008750.1 3810602 3812842 D KEGG: shm:Shewmr7_0831 hypothetical protein; hypothetical protein 3810602..3812842 Shewanella sp. W3-18-1 4659745 YP_964706.1 CDS Sputw3181_3338 NC_008750.1 3812911 3814827 R PFAM: peptidase U32; KEGG: shm:Shewmr7_0828 peptidase U32; peptidase U32 complement(3812911..3814827) Shewanella sp. W3-18-1 4659746 YP_964707.1 CDS Sputw3181_3339 NC_008750.1 3815031 3815711 D PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_0827 pseudouridylate synthase; pseudouridylate synthase 3815031..3815711 Shewanella sp. W3-18-1 4659747 YP_964708.1 CDS Sputw3181_3340 NC_008750.1 3815774 3816268 D transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 3815774..3816268 Shewanella sp. W3-18-1 4659748 YP_964709.1 CDS Sputw3181_3341 NC_008750.1 3816468 3820346 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO1915 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 3816468..3820346 Shewanella sp. W3-18-1 4659749 YP_964710.1 CDS Sputw3181_3342 NC_008750.1 3820415 3821185 R PFAM: ABC-2 type transporter; KEGG: she:Shewmr4_3143 ABC-2 type transporter; ABC transporter complement(3820415..3821185) Shewanella sp. W3-18-1 4659750 YP_964711.1 CDS Sputw3181_3343 NC_008750.1 3821182 3822120 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3802 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(3821182..3822120) Shewanella sp. W3-18-1 4659751 YP_964712.1 CDS Sputw3181_3344 NC_008750.1 3822258 3822788 R KEGG: shm:Shewmr7_0822 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase complement(3822258..3822788) Shewanella sp. W3-18-1 4659752 YP_964713.1 CDS Sputw3181_3345 NC_008750.1 3822796 3823455 R TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: shm:Shewmr7_0821 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; aromatic acid decarboxylase complement(3822796..3823455) Shewanella sp. W3-18-1 4659753 YP_964714.1 CDS Sputw3181_3346 NC_008750.1 3823457 3824851 R TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: shm:Shewmr7_0820 UDP-N-acetylmuramate; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase complement(3823457..3824851) Shewanella sp. W3-18-1 4659754 YP_964715.1 CDS Sputw3181_3347 NC_008750.1 3825020 3825655 R KEGG: she:Shewmr4_3148 hypothetical protein; hypothetical protein complement(3825020..3825655) Shewanella sp. W3-18-1 4659874 YP_964716.1 CDS Sputw3181_3348 NC_008750.1 3825804 3826667 R KEGG: she:Shewmr4_3149 sterol desaturase family protein; sterol desaturase family protein complement(3825804..3826667) Shewanella sp. W3-18-1 4659757 YP_964717.1 CDS Sputw3181_3349 NC_008750.1 3826802 3827833 R KEGG: she:Shewmr4_3150 hypothetical protein; hypothetical protein complement(3826802..3827833) Shewanella sp. W3-18-1 4659758 YP_964718.1 CDS Sputw3181_3350 NC_008750.1 3828055 3828423 R KEGG: shm:Shewmr7_0816 OmpA domain protein transmembrane region-containing protein; OmpA domain-containing protein complement(3828055..3828423) Shewanella sp. W3-18-1 4659760 YP_964719.1 CDS Sputw3181_3351 NC_008750.1 3829047 3829613 D PFAM: uncharacterized lipoprotein; KEGG: shm:Shewmr7_0815 uncharacterized lipoprotein; lipoprotein 3829047..3829613 Shewanella sp. W3-18-1 4659761 YP_964720.1 CDS Sputw3181_3352 NC_008750.1 3829644 3830228 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: shm:Shewmr7_0814 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3829644..3830228 Shewanella sp. W3-18-1 4659762 YP_964721.1 CDS Sputw3181_3353 NC_008750.1 3830296 3830616 D KEGG: shm:Shewmr7_0813 hypothetical protein; hypothetical protein 3830296..3830616 Shewanella sp. W3-18-1 4659765 YP_964722.1 CDS Sputw3181_3354 NC_008750.1 3830809 3832224 D PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3814 AmpG protein, putative; major facilitator superfamily transporter 3830809..3832224 Shewanella sp. W3-18-1 4659766 YP_964723.1 CDS Sputw3181_3355 NC_008750.1 3832332 3832817 R putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein complement(3832332..3832817) Shewanella sp. W3-18-1 4659767 YP_964724.1 CDS Sputw3181_3356 NC_008750.1 3832981 3833340 D PFAM: VanZ family protein; KEGG: she:Shewmr4_3157 VanZ family protein; VanZ family protein 3832981..3833340 Shewanella sp. W3-18-1 4659768 YP_964725.1 CDS Sputw3181_3357 NC_008750.1 3833385 3834347 D KEGG: she:Shewmr4_3158 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 3833385..3834347 Shewanella sp. W3-18-1 4659769 YP_964726.1 CDS Sputw3181_3358 NC_008750.1 3834459 3834869 D PFAM: nitrogen regulatory protein P-II; KEGG: shm:Shewmr7_0808 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3834459..3834869 Shewanella sp. W3-18-1 4659773 YP_964727.1 CDS Sputw3181_3359 NC_008750.1 3834904 3836448 R PFAM: EAL domain protein; KEGG: son:SO3821 rtn protein; diguanylate phosphodiesterase complement(3834904..3836448) Shewanella sp. W3-18-1 4659775 YP_964728.1 CDS Sputw3181_3360 NC_008750.1 3836564 3837790 R PFAM: protein of unknown function DUF819; KEGG: sfr:Sfri_2589 protein of unknown function DUF819; hypothetical protein complement(3836564..3837790) Shewanella sp. W3-18-1 4659776 YP_964729.1 CDS Sputw3181_3361 NC_008750.1 3837813 3838709 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_2588 transcriptional regulator, LysR family protein; LysR family transcriptional regulator complement(3837813..3838709) Shewanella sp. W3-18-1 4659854 YP_964730.1 CDS Sputw3181_3362 NC_008750.1 3838833 3839861 R KEGG: she:Shewmr4_3227 outer membrane porin, putative; outer membrane porin complement(3838833..3839861) Shewanella sp. W3-18-1 4659440 YP_964731.1 CDS Sputw3181_3364 NC_008750.1 3841073 3842446 R PFAM: transposase Tn5, dimerisation domain protein; KEGG: ppr:PBPRB0910 hypothetical transposase; transposase Tn5 dimerisation subunit complement(3841073..3842446) Shewanella sp. W3-18-1 4661204 YP_964732.1 CDS Sputw3181_3365 NC_008750.1 3843572 3844420 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(3843572..3844420) Shewanella sp. W3-18-1 4659430 YP_964733.1 CDS Sputw3181_3366 NC_008750.1 3844476 3845723 R PFAM: protein of unknown function DUF819; KEGG: shm:Shewmr7_0802 protein of unknown function DUF819; hypothetical protein complement(3844476..3845723) Shewanella sp. W3-18-1 4659410 YP_964734.1 CDS Sputw3181_3367 NC_008750.1 3845886 3846674 R KEGG: shm:Shewmr7_0801 hypothetical protein; hypothetical protein complement(3845886..3846674) Shewanella sp. W3-18-1 4659127 YP_964735.1 CDS Sputw3181_3368 NC_008750.1 3846674 3847069 R PFAM: Invasion gene expression up-regulator, SirB; KEGG: shm:Shewmr7_0800 invasion gene expression up-regulator, SirB; invasion gene expression up-regulator, SirB complement(3846674..3847069) Shewanella sp. W3-18-1 4659126 YP_964736.1 CDS Sputw3181_3369 NC_008750.1 3847183 3847389 D KEGG: shm:Shewmr7_0799 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3847183..3847389 Shewanella sp. W3-18-1 4660964 YP_964737.1 CDS Sputw3181_3371 NC_008750.1 3847875 3848204 R hypothetical protein complement(3847875..3848204) Shewanella sp. W3-18-1 4658869 YP_964738.1 CDS Sputw3181_3372 NC_008750.1 3848262 3848654 R KEGG: cgb:cg1190 hypothetical protein; hypothetical protein complement(3848262..3848654) Shewanella sp. W3-18-1 4659318 YP_964739.1 CDS Sputw3181_3373 NC_008750.1 3849097 3849945 R TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: she:Shewmr4_3168 modification methylase, HemK family; HemK family modification methylase complement(3849097..3849945) Shewanella sp. W3-18-1 4659258 YP_964740.1 CDS prfA NC_008750.1 3849948 3851039 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(3849948..3851039) Shewanella sp. W3-18-1 4659235 YP_964741.1 CDS hemA NC_008750.1 3851054 3852304 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(3851054..3852304) Shewanella sp. W3-18-1 4659229 YP_964742.1 CDS Sputw3181_3376 NC_008750.1 3852557 3853201 D PFAM: outer membrane lipoprotein LolB; KEGG: son:SO3835 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 3852557..3853201 Shewanella sp. W3-18-1 4659193 YP_964743.1 CDS ipk NC_008750.1 3853203 3854057 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3853203..3854057 Shewanella sp. W3-18-1 4659048 YP_964744.1 CDS Sputw3181_3378 NC_008750.1 3854168 3855115 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3854168..3855115 Shewanella sp. W3-18-1 4659049 YP_964745.1 CDS Sputw3181_3379 NC_008750.1 3855178 3857040 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_0792 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3855178..3857040) Shewanella sp. W3-18-1 4659051 YP_964746.1 CDS Sputw3181_3380 NC_008750.1 3857455 3857988 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO3840 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3857455..3857988 Shewanella sp. W3-18-1 4659052 YP_964747.1 CDS Sputw3181_3381 NC_008750.1 3857988 3858563 D KEGG: she:Shewmr4_3176 hypothetical protein; hypothetical protein 3857988..3858563 Shewanella sp. W3-18-1 4659054 YP_964748.1 CDS Sputw3181_3382 NC_008750.1 3858560 3859516 D KEGG: she:Shewmr4_3177 hypothetical protein; hypothetical protein 3858560..3859516 Shewanella sp. W3-18-1 4659055 YP_964749.1 CDS Sputw3181_3383 NC_008750.1 3859591 3860280 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shm:Shewmr7_0788 pseudouridine synthase, Rsu; pseudouridine synthase complement(3859591..3860280) Shewanella sp. W3-18-1 4658871 YP_964750.1 CDS Sputw3181_3384 NC_008750.1 3860673 3862757 D PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: she:Shewmr4_3179 endothelin-converting enzyme 1; endothelin-converting protein 1 3860673..3862757 Shewanella sp. W3-18-1 4658859 YP_964751.1 CDS Sputw3181_3385 NC_008750.1 3862977 3863762 D KEGG: she:Shewmr4_3180 hypothetical protein; hypothetical protein 3862977..3863762 Shewanella sp. W3-18-1 4658610 YP_964752.1 CDS Sputw3181_3386 NC_008750.1 3863922 3864329 D KEGG: she:Shewmr4_3181 hypothetical protein; hypothetical protein 3863922..3864329 Shewanella sp. W3-18-1 4658549 YP_964753.1 CDS Sputw3181_3387 NC_008750.1 3864360 3864860 D KEGG: shm:Shewmr7_0784 hypothetical protein; hypothetical protein 3864360..3864860 Shewanella sp. W3-18-1 4658772 YP_964754.1 CDS Sputw3181_3388 NC_008750.1 3865367 3865897 D PFAM: membrane-flanked domain; KEGG: son:SO3849 hypothetical protein; membrane-flanked domain-containing protein 3865367..3865897 Shewanella sp. W3-18-1 4658582 YP_964755.1 CDS Sputw3181_3389 NC_008750.1 3865956 3867230 D KEGG: she:Shewmr4_3186 putative manganese transporter; putative manganese transporter 3865956..3867230 Shewanella sp. W3-18-1 4658575 YP_964756.1 CDS Sputw3181_3390 NC_008750.1 3867374 3867844 D PFAM: protein of unknown function DUF1456; KEGG: shm:Shewmr7_0779 protein of unknown function DUF1456; hypothetical protein 3867374..3867844 Shewanella sp. W3-18-1 4658759 YP_964757.1 CDS Sputw3181_3391 NC_008750.1 3868112 3869800 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 3868112..3869800 Shewanella sp. W3-18-1 4658562 YP_964758.1 CDS Sputw3181_3392 NC_008750.1 3870000 3870434 R KEGG: son:SO3856 hypothetical protein; hypothetical protein complement(3870000..3870434) Shewanella sp. W3-18-1 4660936 YP_964759.1 CDS Sputw3181_3393 NC_008750.1 3870664 3871866 D TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: shm:Shewmr7_0771 putative iron-sulfur cluster binding protein; putative iron-sulfur cluster binding protein 3870664..3871866 Shewanella sp. W3-18-1 4658554 YP_964760.1 CDS Sputw3181_3394 NC_008750.1 3871975 3873063 R PFAM: porin, Gram-negative type; KEGG: son:SO3896 outer membrane porin, putative; porin complement(3871975..3873063) Shewanella sp. W3-18-1 4658689 YP_964761.1 CDS Sputw3181_3395 NC_008750.1 3874001 3874813 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: she:Shewmr4_3226 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 3874001..3874813 Shewanella sp. W3-18-1 4658684 YP_964762.1 CDS Sputw3181_3396 NC_008750.1 3874831 3876477 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3894 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3874831..3876477) Shewanella sp. W3-18-1 4658468 YP_964763.1 CDS Sputw3181_3397 NC_008750.1 3876647 3877258 D KEGG: she:Shewmr4_3224 hypothetical protein; hypothetical protein 3876647..3877258 Shewanella sp. W3-18-1 4658469 YP_964764.1 CDS Sputw3181_3398 NC_008750.1 3877375 3877506 R KEGG: sfr:Sfri_0507 hypothetical protein; hypothetical protein complement(3877375..3877506) Shewanella sp. W3-18-1 4658470 YP_964765.1 CDS Sputw3181_3399 NC_008750.1 3877810 3879390 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: son:SO3890 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3877810..3879390 Shewanella sp. W3-18-1 4658471 YP_964766.1 CDS Sputw3181_3400 NC_008750.1 3879827 3882103 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(3879827..3882103) Shewanella sp. W3-18-1 4658867 YP_964767.1 CDS Sputw3181_3401 NC_008750.1 3882096 3883271 R KEGG: shm:Shewmr7_0759 L-sorbosone dehydrogenase, putative; L-sorbosone dehydrogenase complement(3882096..3883271) Shewanella sp. W3-18-1 4658473 YP_964768.1 CDS Sputw3181_3402 NC_008750.1 3883324 3885210 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(3883324..3885210) Shewanella sp. W3-18-1 4658475 YP_964769.1 CDS Sputw3181_3403 NC_008750.1 3885267 3885842 R PFAM: protein of unknown function UPF0227; KEGG: she:Shewmr4_3232 protein of unknown function UPF0227; hypothetical protein complement(3885267..3885842) Shewanella sp. W3-18-1 4658476 YP_964770.1 CDS Sputw3181_3404 NC_008750.1 3885869 3886708 R PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; KEGG: she:Shewmr4_3233 calcineurin phosphoesterase C-terminal domain protein; calcineurin phosphoesterase C-terminal domain-containing protein complement(3885869..3886708) Shewanella sp. W3-18-1 4658477 YP_964771.1 CDS Sputw3181_3405 NC_008750.1 3886725 3887165 R PFAM: protein of unknown function DUF1249; KEGG: son:SO3902 hypothetical protein; hypothetical protein complement(3886725..3887165) Shewanella sp. W3-18-1 4658478 YP_964772.1 CDS Sputw3181_3406 NC_008750.1 3887178 3887780 R PFAM: NUDIX hydrolase; KEGG: son:SO3903 ADP-ribose pyrophosphatase; ADP-ribose diphosphatase complement(3887178..3887780) Shewanella sp. W3-18-1 4658479 YP_964773.1 CDS tolC NC_008750.1 3888024 3889331 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3888024..3889331 Shewanella sp. W3-18-1 4658481 YP_964774.1 CDS Sputw3181_3408 NC_008750.1 3889399 3890094 R KEGG: she:Shewmr4_3237 hypothetical protein; hypothetical protein complement(3889399..3890094) Shewanella sp. W3-18-1 4658480 YP_964775.1 CDS Sputw3181_3409 NC_008750.1 3890139 3891107 R KEGG: shm:Shewmr7_0751 hypothetical protein; hypothetical protein complement(3890139..3891107) Shewanella sp. W3-18-1 4658482 YP_964776.1 CDS Sputw3181_3410 NC_008750.1 3891119 3891604 R PFAM: protein of unknown function DUF461; KEGG: son:SO3907 hypothetical protein; hypothetical protein complement(3891119..3891604) Shewanella sp. W3-18-1 4658483 YP_964777.1 CDS Sputw3181_3411 NC_008750.1 3891639 3892376 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shm:Shewmr7_0749 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3891639..3892376 Shewanella sp. W3-18-1 4658484 YP_964778.1 CDS Sputw3181_3412 NC_008750.1 3892489 3892689 R KEGG: she:Shewmr4_3241 phage shock protein C, PspC; phage shock protein C, PspC complement(3892489..3892689) Shewanella sp. W3-18-1 4658485 YP_964779.1 CDS Sputw3181_3413 NC_008750.1 3892843 3893133 R KEGG: shm:Shewmr7_0747 hypothetical protein; hypothetical protein complement(3892843..3893133) Shewanella sp. W3-18-1 4658486 YP_964780.1 CDS Sputw3181_3414 NC_008750.1 3893331 3894362 R TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: she:Shewmr4_3243 TIM-barrel protein, YjbN family; tRNA-dihydrouridine synthase A complement(3893331..3894362) Shewanella sp. W3-18-1 4658487 YP_964781.1 CDS Sputw3181_3415 NC_008750.1 3894876 3895340 D KEGG: shm:Shewmr7_0696 putative chemotaxis protein CheX; putative chemotaxis protein CheX 3894876..3895340 Shewanella sp. W3-18-1 4658488 YP_964782.1 CDS alr NC_008750.1 3895412 3896488 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(3895412..3896488) Shewanella sp. W3-18-1 4658490 YP_964783.1 CDS Sputw3181_3417 NC_008750.1 3896631 3898037 R KEGG: son:SO3917 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; replicative DNA helicase complement(3896631..3898037) Shewanella sp. W3-18-1 4658491 YP_964784.1 CDS Sputw3181_3418 NC_008750.1 3898156 3900354 D KEGG: shm:Shewmr7_0691 hypothetical protein; hypothetical protein 3898156..3900354 Shewanella sp. W3-18-1 4658492 YP_964785.1 CDS rplI NC_008750.1 3900595 3901047 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(3900595..3901047) Shewanella sp. W3-18-1 4658493 YP_964786.1 CDS rpsR NC_008750.1 3901084 3901311 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(3901084..3901311) Shewanella sp. W3-18-1 4658494 YP_964787.1 CDS Sputw3181_3421 NC_008750.1 3901323 3901628 R binds single-stranded DNA at the primosome assembly site; primosomal replication protein N complement(3901323..3901628) Shewanella sp. W3-18-1 4658495 YP_964788.1 CDS rpsF NC_008750.1 3901637 3902032 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(3901637..3902032) Shewanella sp. W3-18-1 4658496 YP_964789.1 CDS Sputw3181_3423 NC_008750.1 3902246 3902989 D PFAM: protein of unknown function DUF481; KEGG: she:Shewmr4_3261 protein of unknown function DUF481; hypothetical protein 3902246..3902989 Shewanella sp. W3-18-1 4658497 YP_964790.1 CDS Sputw3181_3424 NC_008750.1 3903310 3904755 D PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_3262 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3903310..3904755 Shewanella sp. W3-18-1 4658498 YP_964791.1 CDS Sputw3181_3425 NC_008750.1 3904820 3905560 R Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase complement(3904820..3905560) Shewanella sp. W3-18-1 4658499 YP_964792.1 CDS Sputw3181_3426 NC_008750.1 3905561 3907984 R KEGG: shm:Shewmr7_0683 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R complement(3905561..3907984) Shewanella sp. W3-18-1 4658500 YP_964793.1 CDS Sputw3181_3427 NC_008750.1 3908024 3908680 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: shm:Shewmr7_0682 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(3908024..3908680) Shewanella sp. W3-18-1 4658501 YP_964794.1 CDS Sputw3181_3428 NC_008750.1 3908790 3910085 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3908790..3910085) Shewanella sp. W3-18-1 4658502 YP_964795.1 CDS Sputw3181_3429 NC_008750.1 3910152 3910352 R KEGG: shm:Shewmr7_0680 hypothetical protein; hypothetical protein complement(3910152..3910352) Shewanella sp. W3-18-1 4658503 YP_964796.1 CDS rpsI NC_008750.1 3910446 3910838 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(3910446..3910838) Shewanella sp. W3-18-1 4658660 YP_964797.1 CDS rplM NC_008750.1 3910853 3911281 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(3910853..3911281) Shewanella sp. W3-18-1 4658505 YP_964798.1 CDS Sputw3181_3432 NC_008750.1 3911570 3912682 R PFAM: AFG1-family ATPase; KEGG: she:Shewmr4_3270 AFG1-family ATPase; AFG1 family ATPase complement(3911570..3912682) Shewanella sp. W3-18-1 4658506 YP_964799.1 CDS Sputw3181_3433 NC_008750.1 3913101 3914456 D TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: she:Shewmr4_3271 protease Do; protease Do 3913101..3914456 Shewanella sp. W3-18-1 4658508 YP_964800.1 CDS Sputw3181_3434 NC_008750.1 3914584 3915666 D TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3943 protease DegS; periplasmic serine protease DegS 3914584..3915666 Shewanella sp. W3-18-1 4658509 YP_964801.1 CDS Sputw3181_3435 NC_008750.1 3916472 3917674 R PFAM: Radical SAM domain protein; KEGG: vpa:VPA0443 hypothetical protein; radical SAM domain-containing protein complement(3916472..3917674) Shewanella sp. W3-18-1 4658510 YP_964802.1 CDS Sputw3181_3436 NC_008750.1 3917667 3919148 R PFAM: Radical SAM domain protein; KEGG: vpa:VPA0442 hypothetical protein; radical SAM domain-containing protein complement(3917667..3919148) Shewanella sp. W3-18-1 4658512 YP_964803.1 CDS Sputw3181_3437 NC_008750.1 3919148 3919453 R hypothetical protein complement(3919148..3919453) Shewanella sp. W3-18-1 4658513 YP_964804.1 CDS Sputw3181_3438 NC_008750.1 3919964 3920614 D PFAM: protein of unknown function DUF1234; KEGG: son:SO4650 hypothetical protein; hypothetical protein 3919964..3920614 Shewanella sp. W3-18-1 4658514 YP_964805.1 CDS Sputw3181_3439 NC_008750.1 3920684 3920857 D KEGG: son:SO4651 hypothetical protein; hypothetical protein 3920684..3920857 Shewanella sp. W3-18-1 4658515 YP_964806.1 CDS Sputw3181_3440 NC_008750.1 3920946 3921959 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO4652 sulfate ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter substrate-binding protein 3920946..3921959 Shewanella sp. W3-18-1 4658516 YP_964807.1 CDS Sputw3181_3441 NC_008750.1 3922028 3922852 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4653 sulfate ABC transporter, permease protein; sulfate ABC transporter permease 3922028..3922852 Shewanella sp. W3-18-1 4658517 YP_964808.1 CDS Sputw3181_3442 NC_008750.1 3922857 3923708 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4654 sulfate ABC transporter, permease protein; sulfate ABC transporter permease 3922857..3923708 Shewanella sp. W3-18-1 4658518 YP_964809.1 CDS Sputw3181_3443 NC_008750.1 3923736 3924800 D KEGG: son:SO4655 sulfate ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 3923736..3924800 Shewanella sp. W3-18-1 4658519 YP_964810.1 CDS Sputw3181_3444 NC_008750.1 3924899 3926059 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: dge:Dgeo_0011 methionine gamma-lyase; methionine gamma-lyase complement(3924899..3926059) Shewanella sp. W3-18-1 4658520 YP_964811.1 CDS Sputw3181_3445 NC_008750.1 3926078 3927082 R PFAM: 2OG-Fe(II) oxygenase; KEGG: ilo:IL0163 2OG-Fe(II) oxygenase superfamily protein; 2OG-Fe(II) oxygenase complement(3926078..3927082) Shewanella sp. W3-18-1 4658521 YP_964812.1 CDS Sputw3181_3446 NC_008750.1 3927512 3928771 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3927512..3928771) Shewanella sp. W3-18-1 4658522 YP_964813.1 CDS Sputw3181_3447 NC_008750.1 3928781 3929038 R PFAM: BolA family protein; KEGG: shm:Shewmr7_3338 BolA family protein; BolA family protein complement(3928781..3929038) Shewanella sp. W3-18-1 4658523 YP_964814.1 CDS Sputw3181_3448 NC_008750.1 3929058 3929342 R KEGG: son:SO3950 SpoIIAA family protein; SpoIIAA family protein complement(3929058..3929342) Shewanella sp. W3-18-1 4658526 YP_964815.1 CDS Sputw3181_3449 NC_008750.1 3929339 3930004 R PFAM: toluene tolerance family protein; KEGG: shm:Shewmr7_3340 toluene tolerance family protein; toluene tolerance family protein complement(3929339..3930004) Shewanella sp. W3-18-1 4658527 YP_964816.1 CDS Sputw3181_3450 NC_008750.1 3930016 3930489 R PFAM: Mammalian cell entry related domain protein; KEGG: son:SO3952 mce-related protein; hypothetical protein complement(3930016..3930489) Shewanella sp. W3-18-1 4658528 YP_964817.1 CDS Sputw3181_3451 NC_008750.1 3930546 3931331 R PFAM: protein of unknown function DUF140; KEGG: son:SO3953 putative membrane protein; hypothetical protein complement(3930546..3931331) Shewanella sp. W3-18-1 4658530 YP_964818.1 CDS Sputw3181_3452 NC_008750.1 3931328 3932146 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3343 ABC transporter related; ABC transporter-like protein complement(3931328..3932146) Shewanella sp. W3-18-1 4658633 YP_964819.1 CDS Sputw3181_3453 NC_008750.1 3932800 3933777 D KEGG: shm:Shewmr7_3344 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 3932800..3933777 Shewanella sp. W3-18-1 4658533 YP_964820.1 CDS Sputw3181_3454 NC_008750.1 3933777 3934328 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3933777..3934328 Shewanella sp. W3-18-1 4658534 YP_964821.1 CDS Sputw3181_3455 NC_008750.1 3934325 3934885 D PFAM: protein of unknown function DUF1239; KEGG: son:SO3958 hypothetical protein; hypothetical protein 3934325..3934885 Shewanella sp. W3-18-1 4658568 YP_964822.1 CDS Sputw3181_3456 NC_008750.1 3934872 3935426 D PFAM: OstA family protein; KEGG: son:SO3959 hypothetical protein; OstA family protein 3934872..3935426 Shewanella sp. W3-18-1 4658199 YP_964823.1 CDS Sputw3181_3457 NC_008750.1 3935423 3936154 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3348 ABC transporter related; ABC transporter-like protein 3935423..3936154 Shewanella sp. W3-18-1 4658170 YP_964824.1 CDS Sputw3181_3458 NC_008750.1 3936258 3937733 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3936258..3937733 Shewanella sp. W3-18-1 4658149 YP_964825.1 CDS Sputw3181_3459 NC_008750.1 3937762 3938049 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shm:Shewmr7_3350 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA 3937762..3938049 Shewanella sp. W3-18-1 4657723 YP_964826.1 CDS Sputw3181_3460 NC_008750.1 3938052 3938495 D TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: shm:Shewmr7_3351 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 3938052..3938495 Shewanella sp. W3-18-1 4658108 YP_964827.1 CDS Sputw3181_3461 NC_008750.1 3938492 3939346 D PFAM: uncharacterized P-loop ATPase protein UPF0042; KEGG: shm:Shewmr7_3352 uncharacterized P-loop ATPase protein UPF0042; hypothetical protein 3938492..3939346 Shewanella sp. W3-18-1 4658106 YP_964828.1 CDS Sputw3181_3462 NC_008750.1 3939333 3939608 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: she:Shewmr4_0669 phosphocarrier, HPr family; phosphotransferase system, phosphocarrier protein HPr 3939333..3939608 Shewanella sp. W3-18-1 4658096 YP_964829.1 CDS Sputw3181_3463 NC_008750.1 3939821 3941185 D TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO3966 magnesium transporter; magnesium transporter 3939821..3941185 Shewanella sp. W3-18-1 4658053 YP_964830.1 CDS Sputw3181_3464 NC_008750.1 3941298 3942122 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: she:Shewmr4_0667 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdate ABC transporter substrate-binding protein complement(3941298..3942122) Shewanella sp. W3-18-1 4658043 YP_964831.1 CDS Sputw3181_3465 NC_008750.1 3942357 3943043 R PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: she:Shewmr4_0666 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(3942357..3943043) Shewanella sp. W3-18-1 4658037 YP_964832.1 CDS Sputw3181_3466 NC_008750.1 3943682 3943915 D PFAM: transposase IS3/IS911 family protein; KEGG: shm:Shewmr7_3357 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 3943682..3943915 Shewanella sp. W3-18-1 4657700 YP_964833.1 CDS Sputw3181_3467 NC_008750.1 3944761 3945618 R PFAM: protein of unknown function RIO1; KEGG: shm:Shewmr7_3358 protein of unknown function RIO1; hypothetical protein complement(3944761..3945618) Shewanella sp. W3-18-1 4658017 YP_964834.1 CDS Sputw3181_3468 NC_008750.1 3945976 3946524 D KEGG: shm:Shewmr7_3360 hypothetical protein; hypothetical protein 3945976..3946524 Shewanella sp. W3-18-1 4658007 YP_964835.1 CDS groEL NC_008750.1 3948601 3950238 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(3948601..3950238) Shewanella sp. W3-18-1 4657994 YP_964836.1 CDS groES NC_008750.1 3950296 3950586 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(3950296..3950586) Shewanella sp. W3-18-1 4657953 YP_964837.1 CDS Sputw3181_3471 NC_008750.1 3950812 3952182 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO0702 MATE efflux family protein; MATE efflux family protein 3950812..3952182 Shewanella sp. W3-18-1 4657939 YP_964838.1 CDS Sputw3181_3472 NC_008750.1 3952185 3953174 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0701 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3952185..3953174) Shewanella sp. W3-18-1 4657932 YP_964839.1 CDS Sputw3181_3473 NC_008750.1 3953301 3954380 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_0551 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3953301..3954380 Shewanella sp. W3-18-1 4657894 YP_964840.1 CDS Sputw3181_3474 NC_008750.1 3954384 3957467 D PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_0550 acriflavin resistance protein; acriflavin resistance protein 3954384..3957467 Shewanella sp. W3-18-1 4657865 YP_964841.1 CDS Sputw3181_3475 NC_008750.1 3957576 3958421 R KEGG: son:SO0764 hypothetical protein; hypothetical protein complement(3957576..3958421) Shewanella sp. W3-18-1 4657821 YP_964842.1 CDS Sputw3181_3476 NC_008750.1 3958490 3959173 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: she:Shewmr4_3366 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(3958490..3959173) Shewanella sp. W3-18-1 4661885 YP_964843.1 CDS Sputw3181_3477 NC_008750.1 3959283 3960113 R PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: shm:Shewmr7_0586 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3959283..3960113) Shewanella sp. W3-18-1 4657777 YP_964844.1 CDS Sputw3181_3478 NC_008750.1 3960285 3962321 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0737 TonB-dependent receptor, putative; TonB-dependent receptor complement(3960285..3962321) Shewanella sp. W3-18-1 4657912 YP_964845.1 CDS Sputw3181_3479 NC_008750.1 3962545 3963483 R KEGG: son:SO0735 hypothetical protein; hypothetical protein complement(3962545..3963483) Shewanella sp. W3-18-1 4657917 YP_964846.1 CDS Sputw3181_3480 NC_008750.1 3963485 3963883 R PFAM: transcriptional regulator PadR family protein; KEGG: son:SO0734 hypothetical protein; PadR-like family transcriptional regulator complement(3963485..3963883) Shewanella sp. W3-18-1 4657941 YP_964847.1 CDS Sputw3181_3481 NC_008750.1 3964234 3964599 D PFAM: Thioredoxin domain; KEGG: she:Shewmr4_3375 thioredoxin domain; thioredoxin domain-containing protein 3964234..3964599 Shewanella sp. W3-18-1 4657973 YP_964848.1 CDS Sputw3181_3482 NC_008750.1 3964618 3965130 R KEGG: son:SO0728 hypothetical protein; hypothetical protein complement(3964618..3965130) Shewanella sp. W3-18-1 4657993 YP_964849.1 CDS Sputw3181_3483 NC_008750.1 3965127 3965423 R PFAM: protein of unknown function DUF134; Sigma-70, region 4 type 2; KEGG: son:SO0727 hypothetical protein; hypothetical protein complement(3965127..3965423) Shewanella sp. W3-18-1 4660905 YP_964850.1 CDS Sputw3181_3484 NC_008750.1 3965667 3966167 R KEGG: she:Shewmr4_3376 hypothetical protein; hypothetical protein complement(3965667..3966167) Shewanella sp. W3-18-1 4658039 YP_964851.1 CDS Sputw3181_3485 NC_008750.1 3966514 3967992 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_3377 ABC transporter related; ABC transporter-like protein complement(3966514..3967992) Shewanella sp. W3-18-1 4658068 YP_964852.1 CDS nrfA NC_008750.1 3968178 3969581 R catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 complement(3968178..3969581) Shewanella sp. W3-18-1 4658123 YP_964853.1 CDS Sputw3181_3487 NC_008750.1 3969823 3971622 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: shm:Shewmr7_3364 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; nitrate/nitrite sensor protein NarQ 3969823..3971622 Shewanella sp. W3-18-1 4658153 YP_964854.1 CDS Sputw3181_3488 NC_008750.1 3971615 3972244 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: shm:Shewmr7_3365 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 3971615..3972244 Shewanella sp. W3-18-1 4658176 YP_964855.1 CDS Sputw3181_3489 NC_008750.1 3972333 3972764 R PFAM: uncharacterized conserved protein UCP006287; KEGG: she:Shewmr4_0656 uncharacterized conserved protein UCP006287; hypothetical protein complement(3972333..3972764) Shewanella sp. W3-18-1 4658652 YP_964856.1 CDS Sputw3181_3490 NC_008750.1 3972872 3973864 D PFAM: Mg2+ transporter protein, CorA family protein; KEGG: shm:Shewmr7_3367 Mg2 transporter protein, CorA family protein; Mg2+ transporter protein, CorA family protein 3972872..3973864 Shewanella sp. W3-18-1 4658675 YP_964857.1 CDS Sputw3181_3491 NC_008750.1 3973944 3975299 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III complement(3973944..3975299) Shewanella sp. W3-18-1 4658686 YP_964858.1 CDS Sputw3181_3492 NC_008750.1 3975720 3976154 R KEGG: son:SO3987 hypothetical protein; hypothetical protein complement(3975720..3976154) Shewanella sp. W3-18-1 4658543 YP_964859.1 CDS Sputw3181_3493 NC_008750.1 3976738 3977454 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3371 two component transcriptional regulator, winged helix family; two-component response regulator 3976738..3977454 Shewanella sp. W3-18-1 4658563 YP_964860.1 CDS Sputw3181_3494 NC_008750.1 3977518 3979800 R PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: shm:Shewmr7_3372 peptidase S9B, dipeptidylpeptidase IV domain protein; peptidase S9B dipeptidylpeptidase IV subunit complement(3977518..3979800) Shewanella sp. W3-18-1 4658756 YP_964861.1 CDS Sputw3181_3495 NC_008750.1 3980105 3981097 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 3980105..3981097 Shewanella sp. W3-18-1 4658779 YP_964862.1 CDS Sputw3181_3496 NC_008750.1 3981565 3981921 D hypothetical protein 3981565..3981921 Shewanella sp. W3-18-1 4658802 YP_964863.1 CDS Sputw3181_3497 NC_008750.1 3981918 3982268 D PFAM: IS66 Orf2 family protein; KEGG: pha:PSHAa0409 hypothetical protein; IS66 Orf2 family protein 3981918..3982268 Shewanella sp. W3-18-1 4658605 YP_964864.1 CDS Sputw3181_3498 NC_008750.1 3982349 3983851 D PFAM: transposase IS66; KEGG: pha:PSHAa0410 transposase; transposase IS66 3982349..3983851 Shewanella sp. W3-18-1 4658845 YP_964865.1 CDS Sputw3181_3499 NC_008750.1 3984171 3985664 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: nmu:Nmul_A0119 cytidine/deoxycytidylate deaminase, zinc-binding region; zinc-binding CMP/dCMP deaminase complement(3984171..3985664) Shewanella sp. W3-18-1 4659050 YP_964866.1 CDS Sputw3181_3500 NC_008750.1 3986746 3987093 R PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: nmu:Nmul_A1193 transport-associated; transport-associated complement(3986746..3987093) Shewanella sp. W3-18-1 4659204 YP_964867.1 CDS Sputw3181_3501 NC_008750.1 3987373 3987861 D PFAM: uncharacterized protein UPF0114; KEGG: son:SO3997 hypothetical protein; hypothetical protein 3987373..3987861 Shewanella sp. W3-18-1 4661771 YP_964868.1 CDS Sputw3181_3502 NC_008750.1 3988198 3989904 R PFAM: chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: pha:PSHAa2387 chemotaxis sensory protein; methyl-accepting chemotaxis sensory transducer complement(3988198..3989904) Shewanella sp. W3-18-1 4659274 YP_964869.1 CDS Sputw3181_3503 NC_008750.1 3990229 3991473 R PFAM: sodium:dicarboxylate symporter; KEGG: she:Shewmr4_0642 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(3990229..3991473) Shewanella sp. W3-18-1 4659291 YP_964870.1 CDS Sputw3181_3504 NC_008750.1 3991865 3992737 R KEGG: son:SO4005 hypothetical protein; hypothetical protein complement(3991865..3992737) Shewanella sp. W3-18-1 4659118 YP_964871.1 CDS Sputw3181_3505 NC_008750.1 3992725 3993945 R KEGG: shm:Shewmr7_3380 hypothetical protein; hypothetical protein complement(3992725..3993945) Shewanella sp. W3-18-1 4661027 YP_964872.1 CDS Sputw3181_3506 NC_008750.1 3993994 3994647 R KEGG: shm:Shewmr7_3381 hypothetical protein; hypothetical protein complement(3993994..3994647) Shewanella sp. W3-18-1 4659379 YP_964873.1 CDS Sputw3181_3507 NC_008750.1 3994760 3998431 R KEGG: she:Shewmr4_0638 hypothetical protein; hypothetical protein complement(3994760..3998431) Shewanella sp. W3-18-1 4659382 YP_964874.1 CDS Sputw3181_3508 NC_008750.1 3998748 3999359 R PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: she:Shewmr4_0637 two component transcriptional regulator, LuxR family; response regulator receiver protein complement(3998748..3999359) Shewanella sp. W3-18-1 4659419 YP_964875.1 CDS Sputw3181_3509 NC_008750.1 3999359 4001341 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_0636 periplasmic sensor signal transduction histidine kinase; histidine kinase complement(3999359..4001341) Shewanella sp. W3-18-1 4659881 YP_964876.1 CDS Sputw3181_3510 NC_008750.1 4001647 4002429 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: she:Shewmr4_0635 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4001647..4002429 Shewanella sp. W3-18-1 4659894 YP_964877.1 CDS Sputw3181_3511 NC_008750.1 4002419 4003501 D PFAM: Polysulphide reductase, NrfD; KEGG: she:Shewmr4_0634 polysulphide reductase, NrfD; polysulfide reductase, NrfD 4002419..4003501 Shewanella sp. W3-18-1 4659910 YP_964878.1 CDS Sputw3181_3512 NC_008750.1 4003537 4006644 D PFAM: molydopterin dinucleotide-binding region; KEGG: she:Shewmr4_0633 molydopterin dinucleotide-binding region; molydopterin dinucleotide-binding region 4003537..4006644 Shewanella sp. W3-18-1 4659931 YP_964879.1 CDS Sputw3181_3513 NC_008750.1 4006962 4008269 D KEGG: she:Shewmr4_0632 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 4006962..4008269 Shewanella sp. W3-18-1 4659970 YP_964880.1 CDS Sputw3181_3514 NC_008750.1 4008358 4009059 R KEGG: son:SO4011 hypothetical protein; hypothetical protein complement(4008358..4009059) Shewanella sp. W3-18-1 4659986 YP_964881.1 CDS Sputw3181_3515 NC_008750.1 4009259 4009489 R KEGG: son:SO4012 hypothetical protein; hypothetical protein complement(4009259..4009489) Shewanella sp. W3-18-1 4660023 YP_964882.1 CDS Sputw3181_3516 NC_008750.1 4009634 4010029 R KEGG: shm:Shewmr7_3401 hypothetical protein; hypothetical protein complement(4009634..4010029) Shewanella sp. W3-18-1 4660025 YP_964883.1 CDS Sputw3181_3517 NC_008750.1 4010109 4010387 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO0635 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase complement(4010109..4010387) Shewanella sp. W3-18-1 4660056 YP_964884.1 CDS Sputw3181_3518 NC_008750.1 4010538 4012877 R KEGG: she:Shewmr4_0624 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; penicillin-binding protein 1B complement(4010538..4012877) Shewanella sp. W3-18-1 4660431 YP_964885.1 CDS Sputw3181_3519 NC_008750.1 4012920 4015460 R KEGG: shm:Shewmr7_3407 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like; ATP-dependent helicase HrpB complement(4012920..4015460) Shewanella sp. W3-18-1 4660471 YP_964886.1 CDS Sputw3181_3520 NC_008750.1 4015518 4017725 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: she:Shewmr4_0621 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(4015518..4017725) Shewanella sp. W3-18-1 4660477 YP_964887.1 CDS Sputw3181_3521 NC_008750.1 4018012 4018791 R KEGG: son:SO0625 hypothetical protein; hypothetical protein complement(4018012..4018791) Shewanella sp. W3-18-1 4660918 YP_964888.1 CDS Sputw3181_3522 NC_008750.1 4019214 4019849 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 4019214..4019849 Shewanella sp. W3-18-1 4660559 YP_964889.1 CDS Sputw3181_3523 NC_008750.1 4019932 4020279 D KEGG: shm:Shewmr7_3413 hypothetical protein; hypothetical protein 4019932..4020279 Shewanella sp. W3-18-1 4660602 YP_964890.1 CDS Sputw3181_3524 NC_008750.1 4020260 4020934 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3414 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4020260..4020934 Shewanella sp. W3-18-1 4660679 YP_964891.1 CDS Sputw3181_3525 NC_008750.1 4020931 4022259 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_3415 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4020931..4022259 Shewanella sp. W3-18-1 4660400 YP_964892.1 CDS Sputw3181_3526 NC_008750.1 4022345 4023148 R KEGG: she:Shewmr4_0614 hypothetical protein; hypothetical protein complement(4022345..4023148) Shewanella sp. W3-18-1 4660721 YP_964893.1 CDS astD NC_008750.1 4023344 4024804 R a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase complement(4023344..4024804) Shewanella sp. W3-18-1 4660733 YP_964894.1 CDS Sputw3181_3528 NC_008750.1 4024815 4025834 R PFAM: arginine N-succinyltransferase beta subunit; KEGG: shm:Shewmr7_3418 arginine N-succinyltransferase; arginine N-succinyltransferase complement(4024815..4025834) Shewanella sp. W3-18-1 4660757 YP_964895.1 CDS argD NC_008750.1 4025961 4027178 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(4025961..4027178) Shewanella sp. W3-18-1 4660412 YP_964896.1 CDS Sputw3181_3530 NC_008750.1 4027487 4028398 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: shm:Shewmr7_3420 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein complement(4027487..4028398) Shewanella sp. W3-18-1 4661182 YP_964897.1 CDS Sputw3181_3531 NC_008750.1 4028446 4029591 R PFAM: HDOD; KEGG: she:Shewmr4_0609 putative signal transduction protein; putative signal transduction protein complement(4028446..4029591) Shewanella sp. W3-18-1 4661245 YP_964898.1 CDS Sputw3181_3532 NC_008750.1 4029779 4032259 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: shm:Shewmr7_3422 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(4029779..4032259) Shewanella sp. W3-18-1 4661023 YP_964899.1 CDS Sputw3181_3533 NC_008750.1 4032426 4033004 R TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: she:Shewmr4_0607 glutamine amidotransferase of anthranilate synthase; glutamine amidotransferase of anthranilate synthase complement(4032426..4033004) Shewanella sp. W3-18-1 4661289 YP_964900.1 CDS Sputw3181_3534 NC_008750.1 4033123 4033833 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: son:SO4028 single-strand binding protein; single-strand binding protein complement(4033123..4033833) Shewanella sp. W3-18-1 4661309 YP_964901.1 CDS Sputw3181_3535 NC_008750.1 4033941 4035308 R PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4029 transporter, putative; major facilitator superfamily transporter complement(4033941..4035308) Shewanella sp. W3-18-1 4661315 YP_964902.1 CDS Sputw3181_3536 NC_008750.1 4035707 4038583 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: son:SO4030 excinuclease ABC, A subunit; excinuclease ABC subunit A 4035707..4038583 Shewanella sp. W3-18-1 4661340 YP_964903.1 CDS Sputw3181_3537 NC_008750.1 4038888 4040810 D PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO4034 ATP-dependent RNA helicase DeaD; DEAD/DEAH box helicase 4038888..4040810 Shewanella sp. W3-18-1 4661358 YP_964904.1 CDS Sputw3181_3538 NC_008750.1 4040949 4041320 D KEGG: she:Shewmr4_3425 hypothetical protein; hypothetical protein 4040949..4041320 Shewanella sp. W3-18-1 4661386 YP_964905.1 CDS Sputw3181_3539 NC_008750.1 4041317 4041931 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO4039 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase complement(4041317..4041931) Shewanella sp. W3-18-1 4661388 YP_964906.1 CDS Sputw3181_3540 NC_008750.1 4041961 4042980 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4040 integral membrane domain protein; hypothetical protein complement(4041961..4042980) Shewanella sp. W3-18-1 4661512 YP_964907.1 CDS Sputw3181_3541 NC_008750.1 4043254 4044060 D KEGG: son:SO4042 hydratase/decarboxylase family protein; hydratase/decarboxylase family protein 4043254..4044060 Shewanella sp. W3-18-1 4661505 YP_964908.1 CDS Sputw3181_3542 NC_008750.1 4044240 4045352 D TIGRFAM: TonB family protein; KEGG: son:SO4043 TonB domain protein; TonB family protein 4044240..4045352 Shewanella sp. W3-18-1 4661548 YP_964909.1 CDS Sputw3181_3543 NC_008750.1 4045392 4045721 R KEGG: son:SO4044 hypothetical protein; hypothetical protein complement(4045392..4045721) Shewanella sp. W3-18-1 4661558 YP_964910.1 CDS Sputw3181_3544 NC_008750.1 4046520 4047440 R KEGG: psp:PSPPH_1876 hypothetical protein; hypothetical protein complement(4046520..4047440) Shewanella sp. W3-18-1 4661629 YP_964911.1 CDS Sputw3181_3545 NC_008750.1 4047545 4048408 R hypothetical protein complement(4047545..4048408) Shewanella sp. W3-18-1 4661640 YP_964912.1 CDS Sputw3181_3546 NC_008750.1 4049276 4050343 R PFAM: cytochrome c, class I; KEGG: son:SO4047 cytochrome c family protein; cytochrome c, class I complement(4049276..4050343) Shewanella sp. W3-18-1 4661667 YP_964913.1 CDS Sputw3181_3547 NC_008750.1 4050354 4050980 R KEGG: shm:Shewmr7_0519 cytochrome c family protein; cytochrome c family protein complement(4050354..4050980) Shewanella sp. W3-18-1 4661680 YP_964914.1 CDS Sputw3181_3548 NC_008750.1 4051123 4052151 R KEGG: she:Shewmr4_3433 hypothetical protein; hypothetical protein complement(4051123..4052151) Shewanella sp. W3-18-1 4661632 YP_964915.1 CDS Sputw3181_3549 NC_008750.1 4052319 4053377 R PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_0517 secretion protein HlyD family protein; secretion protein HlyD family protein complement(4052319..4053377) Shewanella sp. W3-18-1 4661492 YP_964916.1 CDS Sputw3181_3550 NC_008750.1 4053386 4053892 R PFAM: regulatory protein, MarR; KEGG: she:Shewmr4_3435 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(4053386..4053892) Shewanella sp. W3-18-1 4661055 YP_964917.1 CDS Sputw3181_3551 NC_008750.1 4054080 4055984 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4053 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4054080..4055984 Shewanella sp. W3-18-1 4661016 YP_964918.1 CDS metF NC_008750.1 4056047 4056934 R MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase complement(4056047..4056934) Shewanella sp. W3-18-1 4661395 YP_964919.1 CDS metL NC_008750.1 4057171 4059564 R multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II complement(4057171..4059564) Shewanella sp. W3-18-1 4661826 YP_964920.1 CDS Sputw3181_3554 NC_008750.1 4059576 4060739 R KEGG: son:SO4056 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-succinylhomoserine (thiol)-lyase complement(4059576..4060739) Shewanella sp. W3-18-1 4661037 YP_964921.1 CDS Sputw3181_3555 NC_008750.1 4060952 4061266 D when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4060952..4061266 Shewanella sp. W3-18-1 4661012 YP_964922.1 CDS Sputw3181_3556 NC_008750.1 4061409 4062152 D PFAM: protein of unknown function DUF81; KEGG: son:SO4058 hypothetical protein; hypothetical protein 4061409..4062152 Shewanella sp. W3-18-1 4661083 YP_964923.1 CDS Sputw3181_3557 NC_008750.1 4062258 4063205 R PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4060 polysulfide reductase, subunit C; polysulfide reductase, NrfD complement(4062258..4063205) Shewanella sp. W3-18-1 4661086 YP_964924.1 CDS Sputw3181_3558 NC_008750.1 4063208 4063774 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4061 polysulfide reductase, subunit B; 4Fe-4S ferredoxin complement(4063208..4063774) Shewanella sp. W3-18-1 4661075 YP_964925.1 CDS Sputw3181_3561 NC_008750.1 4066448 4067065 R KEGG: she:Shewmr4_3445 pentapeptide repeat protein; pentapeptide repeat-containing protein complement(4066448..4067065) Shewanella sp. W3-18-1 4660422 YP_964926.1 CDS Sputw3181_3562 NC_008750.1 4067183 4067599 D KEGG: shm:Shewmr7_0505 hypothetical protein; hypothetical protein 4067183..4067599 Shewanella sp. W3-18-1 4661070 YP_964927.1 CDS Sputw3181_3563 NC_008750.1 4067586 4068689 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 4067586..4068689 Shewanella sp. W3-18-1 4661124 YP_964928.1 CDS Sputw3181_3564 NC_008750.1 4068773 4070158 R PFAM: transposase Tn5, dimerisation domain protein; KEGG: plu:plu4494 transposase, IS4 family; transposase Tn5 dimerisation subunit complement(4068773..4070158) Shewanella sp. W3-18-1 4657998 YP_964929.1 CDS Sputw3181_3566 NC_008750.1 4071176 4071724 R KEGG: she:Shewmr4_2242 diguanylate phosphodiesterase; putative diguanylate phosphodiesterase complement(4071176..4071724) Shewanella sp. W3-18-1 4658841 YP_964930.1 CDS Sputw3181_3567 NC_008750.1 4072361 4073236 R PFAM: MORN variant repeat protein; KEGG: fnu:FN2119 hypothetical exported 24-amino acid repeat protein; MORN repeat-containing protein complement(4072361..4073236) Shewanella sp. W3-18-1 4660344 YP_964931.1 CDS Sputw3181_3568 NC_008750.1 4073824 4074402 R PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: sfr:Sfri_0734 OmpA domain protein transmembrane region-containing protein; OmpA domain-containing protein complement(4073824..4074402) Shewanella sp. W3-18-1 4661612 YP_964932.1 CDS Sputw3181_3569 NC_008750.1 4074965 4077115 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_3717 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 4074965..4077115 Shewanella sp. W3-18-1 4661787 YP_964933.1 CDS Sputw3181_3570 NC_008750.1 4077159 4077950 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_0501 methyltransferase type 11; type 11 methyltransferase complement(4077159..4077950) Shewanella sp. W3-18-1 4660891 YP_964934.1 CDS Sputw3181_3571 NC_008750.1 4078091 4078867 R PFAM: EAL domain protein; KEGG: tcx:Tcr_0028 diguanylate phosphodiesterase (EAL domain); diguanylate phosphodiesterase complement(4078091..4078867) Shewanella sp. W3-18-1 4660926 YP_964935.1 CDS Sputw3181_3572 NC_008750.1 4079071 4079784 R PFAM: protein of unknown function DUF541; KEGG: shm:Shewmr7_0500 protein of unknown function DUF541; hypothetical protein complement(4079071..4079784) Shewanella sp. W3-18-1 4660881 YP_964936.1 CDS rimO NC_008750.1 4080166 4081584 D catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 4080166..4081584 Shewanella sp. W3-18-1 4660812 YP_964937.1 CDS Sputw3181_3574 NC_008750.1 4081697 4083100 R TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: chu:CHU_3664 fumarate hydratase/aspartate ammonia-lyase; class II fumarate hydratase complement(4081697..4083100) Shewanella sp. W3-18-1 4660758 YP_964938.1 CDS Sputw3181_3575 NC_008750.1 4083309 4083533 R PFAM: protein of unknown function DUF331; KEGG: shm:Shewmr7_0498 protein of unknown function DUF331; hypothetical protein complement(4083309..4083533) Shewanella sp. W3-18-1 4660724 YP_964939.1 CDS Sputw3181_3576 NC_008750.1 4083784 4084632 D KEGG: shm:Shewmr7_0497 hypothetical protein; hypothetical protein 4083784..4084632 Shewanella sp. W3-18-1 4660554 YP_964940.1 CDS Sputw3181_3577 NC_008750.1 4084798 4086939 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4077 TonB-dependent receptor, putative; TonB-dependent receptor 4084798..4086939 Shewanella sp. W3-18-1 4660469 YP_964941.1 CDS Sputw3181_3578 NC_008750.1 4087116 4088459 R PFAM: peptidase U62, modulator of DNA gyrase; KEGG: she:Shewmr4_3455 peptidase U62, modulator of DNA gyrase; C69 family peptidase complement(4087116..4088459) Shewanella sp. W3-18-1 4661034 YP_964942.1 CDS Sputw3181_3579 NC_008750.1 4088646 4089182 D PFAM: protein of unknown function DUF615; KEGG: shm:Shewmr7_0494 protein of unknown function DUF615; hypothetical protein 4088646..4089182 Shewanella sp. W3-18-1 4660184 YP_964943.1 CDS Sputw3181_3580 NC_008750.1 4089212 4091734 D PFAM: Ig domain protein, group 1 domain protein; KEGG: shm:Shewmr7_0493 Ig domain protein, group 1 domain protein; Ig domain-containing protein 4089212..4091734 Shewanella sp. W3-18-1 4660167 YP_964944.1 CDS Sputw3181_3581 NC_008750.1 4091883 4092350 R PFAM: MgtC/SapB transporter; KEGG: pcr:Pcryo_2508 MgtC/SapB transporter; MgtC/SapB transporter complement(4091883..4092350) Shewanella sp. W3-18-1 4659992 YP_964945.1 CDS Sputw3181_3582 NC_008750.1 4092643 4095027 D PFAM: Catalase domain protein; KEGG: nmu:Nmul_A1515 catalase; catalase 4092643..4095027 Shewanella sp. W3-18-1 4659945 YP_964946.1 CDS Sputw3181_3583 NC_008750.1 4095108 4095728 D KEGG: bam:Bamb_5633 hypothetical protein; hypothetical protein 4095108..4095728 Shewanella sp. W3-18-1 4659672 YP_964947.1 CDS Sputw3181_3584 NC_008750.1 4095879 4096949 D KEGG: pfo:Pfl_3517 hypothetical protein; hypothetical protein 4095879..4096949 Shewanella sp. W3-18-1 4659577 YP_964948.1 CDS Sputw3181_3585 NC_008750.1 4097150 4098481 R PFAM: amino acid permease-associated region; KEGG: she:Shewmr4_3458 amino acid permease-associated region; amino acid permease-associated protein complement(4097150..4098481) Shewanella sp. W3-18-1 4659546 YP_964949.1 CDS Sputw3181_3586 NC_008750.1 4098905 4099792 R PFAM: Ion transport protein; KEGG: sde:Sde_1761 cold shock protein; Ion transport protein complement(4098905..4099792) Shewanella sp. W3-18-1 4659140 YP_964950.1 CDS Sputw3181_3587 NC_008750.1 4100024 4101172 R PFAM: ABC-2 type transporter; KEGG: she:Shewmr4_3461 ABC-2 type transporter; ABC transporter complement(4100024..4101172) Shewanella sp. W3-18-1 4659425 YP_964951.1 CDS Sputw3181_3588 NC_008750.1 4101174 4102400 R PFAM: ABC-2 type transporter; KEGG: son:SO4088 conserved hypothetical protein; ABC transporter complement(4101174..4102400) Shewanella sp. W3-18-1 4659113 YP_964952.1 CDS Sputw3181_3589 NC_008750.1 4102469 4103443 R PFAM: secretion protein HlyD family protein; KEGG: son:SO4089 HlyD family secretion protein; secretion protein HlyD family protein complement(4102469..4103443) Shewanella sp. W3-18-1 4659261 YP_964953.1 CDS Sputw3181_3590 NC_008750.1 4103433 4104827 R PFAM: outer membrane efflux protein; KEGG: shm:Shewmr7_0487 outer membrane efflux protein; outer membrane efflux protein complement(4103433..4104827) Shewanella sp. W3-18-1 4659181 YP_964954.1 CDS Sputw3181_3591 NC_008750.1 4104953 4106401 R PFAM: peptidase U62, modulator of DNA gyrase; KEGG: son:SO4091 TldD protein; C69 family peptidase complement(4104953..4106401) Shewanella sp. W3-18-1 4658946 YP_964955.1 CDS Sputw3181_3592 NC_008750.1 4106535 4107365 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: son:SO4092 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(4106535..4107365) Shewanella sp. W3-18-1 4658848 YP_964956.1 CDS Sputw3181_3593 NC_008750.1 4107289 4111440 R KEGG: she:Shewmr4_3467 hypothetical protein; hypothetical protein complement(4107289..4111440) Shewanella sp. W3-18-1 4658789 YP_964957.1 CDS Sputw3181_3594 NC_008750.1 4111440 4112948 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(4111440..4112948) Shewanella sp. W3-18-1 4658551 YP_964958.1 CDS Sputw3181_3595 NC_008750.1 4113129 4113725 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: shm:Shewmr7_0482 maf protein; maf protein complement(4113129..4113725) Shewanella sp. W3-18-1 4658441 YP_964959.1 CDS Sputw3181_3596 NC_008750.1 4113728 4114216 R PFAM: Rod shape-determining protein MreD; KEGG: son:SO4096 rod shape-determining protein MreD; rod shape-determining protein MreD complement(4113728..4114216) Shewanella sp. W3-18-1 4657746 YP_964960.1 CDS Sputw3181_3597 NC_008750.1 4114216 4115220 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(4114216..4115220) Shewanella sp. W3-18-1 4658180 YP_964961.1 CDS Sputw3181_3598 NC_008750.1 4115264 4116313 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(4115264..4116313) Shewanella sp. W3-18-1 4658079 YP_964962.1 CDS Sputw3181_3599 NC_008750.1 4116657 4120433 R KEGG: shm:Shewmr7_0478 MSHA biogenesis protein MshQ; MSHA biogenesis protein MshQ complement(4116657..4120433) Shewanella sp. W3-18-1 4658014 YP_964963.1 CDS Sputw3181_3600 NC_008750.1 4120426 4120869 R KEGG: shm:Shewmr7_0477 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP complement(4120426..4120869) Shewanella sp. W3-18-1 4657852 YP_964964.1 CDS Sputw3181_3601 NC_008750.1 4120904 4121749 R KEGG: son:SO4102 MSHA biogenesis protein MshO; MSHA biogenesis protein MshO complement(4120904..4121749) Shewanella sp. W3-18-1 4657832 YP_964965.1 CDS Sputw3181_3602 NC_008750.1 4121749 4122297 R KEGG: shm:Shewmr7_0475 methylation site containing protein; methylation site containing protein complement(4121749..4122297) Shewanella sp. W3-18-1 4658411 YP_964966.1 CDS Sputw3181_3603 NC_008750.1 4122287 4122775 R KEGG: son:SO4104 MSHA pilin protein MshC; MSHA pilin protein MshC complement(4122287..4122775) Shewanella sp. W3-18-1 4657890 YP_964967.1 CDS Sputw3181_3604 NC_008750.1 4122983 4123492 R KEGG: she:Shewmr4_3478 methylation site containing protein; methylation site containing protein complement(4122983..4123492) Shewanella sp. W3-18-1 4657915 YP_964968.1 CDS Sputw3181_3605 NC_008750.1 4123506 4124015 R KEGG: she:Shewmr4_3479 methylation site containing protein; methylation site containing protein complement(4123506..4124015) Shewanella sp. W3-18-1 4657961 YP_964969.1 CDS Sputw3181_3606 NC_008750.1 4124067 4124684 R KEGG: son:SO4106 MSHA pilin protein MshB; MSHA pilin protein MshB complement(4124067..4124684) Shewanella sp. W3-18-1 4658018 YP_964970.1 CDS Sputw3181_3607 NC_008750.1 4124761 4125255 R KEGG: son:SO4107 hypothetical protein; hypothetical protein complement(4124761..4125255) Shewanella sp. W3-18-1 4658117 YP_964971.1 CDS Sputw3181_3608 NC_008750.1 4125299 4126519 R PFAM: type II secretion system protein; KEGG: son:SO4108 MSHA biogenesis protein MshG; type II secretion system protein complement(4125299..4126519) Shewanella sp. W3-18-1 4657752 YP_964972.1 CDS Sputw3181_3609 NC_008750.1 4126522 4128282 R PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: shm:Shewmr7_0469 type II secretion system protein E; type II secretion system protein E complement(4126522..4128282) Shewanella sp. W3-18-1 4658452 YP_964973.1 CDS Sputw3181_3610 NC_008750.1 4128279 4129469 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO4110 MSHA biogenesis protein MshN, putative; hypothetical protein complement(4128279..4129469) Shewanella sp. W3-18-1 4658396 YP_964974.1 CDS Sputw3181_3611 NC_008750.1 4129466 4130392 R KEGG: she:Shewmr4_3485 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM complement(4129466..4130392) Shewanella sp. W3-18-1 4658635 YP_964975.1 CDS Sputw3181_3612 NC_008750.1 4130399 4132075 R TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB, short N-terminal domain; KEGG: she:Shewmr4_3486 pilus (MSHA type) biogenesis protein MshL; pilus (MSHA type) biogenesis protein MshL complement(4130399..4132075) Shewanella sp. W3-18-1 4658387 YP_964976.1 CDS Sputw3181_3613 NC_008750.1 4132090 4132407 R KEGG: shm:Shewmr7_0465 MSHA biogenesis protein MshK; MSHA biogenesis protein MshK complement(4132090..4132407) Shewanella sp. W3-18-1 4658743 YP_964977.1 CDS Sputw3181_3614 NC_008750.1 4132394 4133044 R KEGG: shm:Shewmr7_0464 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ complement(4132394..4133044) Shewanella sp. W3-18-1 4658782 YP_964978.1 CDS Sputw3181_3615 NC_008750.1 4133041 4133643 R KEGG: shm:Shewmr7_0463 hypothetical protein; hypothetical protein complement(4133041..4133643) Shewanella sp. W3-18-1 4658842 YP_964979.1 CDS Sputw3181_3616 NC_008750.1 4133640 4134518 R KEGG: son:SO4114.2 hypothetical biogenesis protein MshI; biogenesis protein MshI complement(4133640..4134518) Shewanella sp. W3-18-1 4658910 YP_964980.1 CDS Sputw3181_3617 NC_008750.1 4134744 4136648 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD complement(4134744..4136648) Shewanella sp. W3-18-1 4659668 YP_964981.1 CDS Sputw3181_3618 NC_008750.1 4136835 4138079 R PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: shm:Shewmr7_0460 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); malate dehydrogenase complement(4136835..4138079) Shewanella sp. W3-18-1 4659158 YP_964982.2 CDS rpmE NC_008750.1 4138593 4138805 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(4138593..4138805) Shewanella sp. W3-18-1 4659003 YP_964983.1 CDS Sputw3181_3620 NC_008750.1 4138984 4139886 R KEGG: son:SO4121 hypothetical protein; hypothetical protein complement(4138984..4139886) Shewanella sp. W3-18-1 4659267 YP_964984.1 CDS Sputw3181_3621 NC_008750.1 4139955 4142150 D KEGG: she:Shewmr4_3495 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; primosomal protein N' 4139955..4142150 Shewanella sp. W3-18-1 4659345 YP_964985.1 CDS argS NC_008750.1 4142261 4144006 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 4142261..4144006 Shewanella sp. W3-18-1 4659402 YP_964986.1 CDS Sputw3181_3623 NC_008750.1 4144010 4144702 D PFAM: Sporulation domain protein; KEGG: son:SO4124 cell division protein FtsN, putative; sporulation domain-containing protein 4144010..4144702 Shewanella sp. W3-18-1 4659454 YP_964987.1 CDS Sputw3181_3624 NC_008750.1 4144997 4145221 D KEGG: son:SO4126 hypothetical protein; hypothetical protein 4144997..4145221 Shewanella sp. W3-18-1 4659469 YP_964988.1 CDS Sputw3181_3625 NC_008750.1 4145412 4146356 R PFAM: band 7 protein; KEGG: son:SO4128 SPFH domain/Band 7 family protein; hypothetical protein complement(4145412..4146356) Shewanella sp. W3-18-1 4659681 YP_964989.1 CDS Sputw3181_3626 NC_008750.1 4146356 4147291 R PFAM: band 7 protein; KEGG: son:SO4129 SPFH domain/Band 7 family protein; hypothetical protein complement(4146356..4147291) Shewanella sp. W3-18-1 4659686 YP_964990.1 CDS Sputw3181_3627 NC_008750.1 4147303 4147773 R PFAM: protein of unknown function DUF107; KEGG: shm:Shewmr7_0449 protein of unknown function DUF107; hypothetical protein complement(4147303..4147773) Shewanella sp. W3-18-1 4659590 YP_964991.1 CDS Sputw3181_3628 NC_008750.1 4148253 4149005 D KEGG: shm:Shewmr7_0448 hypothetical protein; hypothetical protein 4148253..4149005 Shewanella sp. W3-18-1 4659977 YP_964992.1 CDS Sputw3181_3629 NC_008750.1 4149108 4149866 R catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase complement(4149108..4149866) Shewanella sp. W3-18-1 4660077 YP_964993.1 CDS Sputw3181_3630 NC_008750.1 4150402 4150614 D PFAM: protein of unknown function DUF465; KEGG: son:SO4134 hypothetical protein; hypothetical protein 4150402..4150614 Shewanella sp. W3-18-1 4660242 YP_964994.1 CDS Sputw3181_3631 NC_008750.1 4150677 4151852 R PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: son:SO4136 decarboxylase, pyridoxal-dependent; diaminopimelate decarboxylase complement(4150677..4151852) Shewanella sp. W3-18-1 4661041 YP_964995.1 CDS Sputw3181_3632 NC_008750.1 4152196 4152675 R KEGG: shm:Shewmr7_0444 hypothetical protein; hypothetical protein complement(4152196..4152675) Shewanella sp. W3-18-1 4660447 YP_964996.1 CDS Sputw3181_3633 NC_008750.1 4152845 4153681 D PFAM: MscS Mechanosensitive ion channel; KEGG: she:Shewmr4_3509 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4152845..4153681 Shewanella sp. W3-18-1 4660529 YP_964997.1 CDS Sputw3181_3634 NC_008750.1 4153798 4155336 D KEGG: son:SO4139 hypothetical protein; hypothetical protein 4153798..4155336 Shewanella sp. W3-18-1 4660553 YP_964998.1 CDS Sputw3181_3635 NC_008750.1 4155536 4156330 D KEGG: pat:Patl_1924 hypothetical protein; hypothetical protein 4155536..4156330 Shewanella sp. W3-18-1 4660581 YP_964999.1 CDS Sputw3181_3636 NC_008750.1 4156522 4157679 D PFAM: Xanthine/uracil/vitamin C permease; KEGG: son:SO4150 transporter, putative; xanthine/uracil/vitamin C permease 4156522..4157679 Shewanella sp. W3-18-1 4660651 YP_965000.1 CDS Sputw3181_3637 NC_008750.1 4157709 4159517 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_3516 histidine kinase; histidine kinase complement(4157709..4159517) Shewanella sp. W3-18-1 4660718 YP_965001.1 CDS Sputw3181_3638 NC_008750.1 4159781 4160383 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: shm:Shewmr7_0436 two component transcriptional regulator, LuxR family; response regulator receiver protein 4159781..4160383 Shewanella sp. W3-18-1 4660740 YP_965002.1 CDS Sputw3181_3639 NC_008750.1 4160746 4161027 D KEGG: she:Shewmr4_3518 hypothetical protein; hypothetical protein 4160746..4161027 Shewanella sp. W3-18-1 4660760 YP_965003.1 CDS Sputw3181_3640 NC_008750.1 4161038 4161589 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: lpn:lpg1988 dihydrofolate reductase; deaminase-reductase domain-containing protein 4161038..4161589 Shewanella sp. W3-18-1 4660865 YP_965004.1 CDS Sputw3181_3641 NC_008750.1 4161755 4162333 D KEGG: son:SO4159 hypothetical protein; hypothetical protein 4161755..4162333 Shewanella sp. W3-18-1 4660930 YP_965005.1 CDS Sputw3181_3642 NC_008750.1 4162358 4163008 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4162358..4163008 Shewanella sp. W3-18-1 4661593 YP_965006.1 CDS hslU NC_008750.1 4163028 4164356 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4163028..4164356 Shewanella sp. W3-18-1 4661118 YP_965007.1 CDS Sputw3181_3644 NC_008750.1 4164563 4164949 D PFAM: protein of unknown function DUF971; KEGG: she:Shewmr4_3523 protein of unknown function DUF971; hypothetical protein 4164563..4164949 Shewanella sp. W3-18-1 4661082 YP_965008.1 CDS Sputw3181_3645 NC_008750.1 4165048 4165635 D KEGG: shm:Shewmr7_0431 hypothetical protein; hypothetical protein 4165048..4165635 Shewanella sp. W3-18-1 4661047 YP_965009.1 CDS Sputw3181_3646 NC_008750.1 4165903 4167516 D PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: shm:Shewmr7_0429 deoxyribodipyrimidine photolyase-related protein; deoxyribodipyrimidine photolyase-like protein 4165903..4167516 Shewanella sp. W3-18-1 4661822 YP_965010.1 CDS Sputw3181_3647 NC_008750.1 4167560 4168267 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: she:Shewmr4_3527 short-chain dehydrogenase/reductase SDR; C factor cell-cell signaling protein 4167560..4168267 Shewanella sp. W3-18-1 4661791 YP_965011.1 CDS Sputw3181_3648 NC_008750.1 4168316 4168792 R KEGG: she:Shewmr4_3528 hypothetical protein; hypothetical protein complement(4168316..4168792) Shewanella sp. W3-18-1 4661689 YP_965012.1 CDS Sputw3181_3649 NC_008750.1 4168824 4169375 R PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: she:Shewmr4_3529 response regulator receiver protein; two component Fis family transcriptional regulator complement(4168824..4169375) Shewanella sp. W3-18-1 4661637 YP_965013.1 CDS Sputw3181_3650 NC_008750.1 4169372 4170676 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_3530 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(4169372..4170676) Shewanella sp. W3-18-1 4661662 YP_965014.1 CDS Sputw3181_3651 NC_008750.1 4170791 4171708 R PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_0418 pseudouridine synthase; pseudouridine synthase complement(4170791..4171708) Shewanella sp. W3-18-1 4661643 YP_965015.1 CDS Sputw3181_3652 NC_008750.1 4171762 4172337 R KEGG: son:SO4182 ATP-dependent protease La (LON) domain protein, putative; ATP-dependent protease La complement(4171762..4172337) Shewanella sp. W3-18-1 4661584 YP_965016.1 CDS Sputw3181_3653 NC_008750.1 4172590 4175043 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_3540 TonB-dependent receptor; TonB-dependent receptor 4172590..4175043 Shewanella sp. W3-18-1 4661574 YP_965017.1 CDS Sputw3181_3654 NC_008750.1 4175179 4175640 D PFAM: conserved hypothetical protein 22; KEGG: shm:Shewmr7_0414 conserved hypothetical protein 22; hypothetical protein 4175179..4175640 Shewanella sp. W3-18-1 4661470 YP_965018.1 CDS Sputw3181_3655 NC_008750.1 4175777 4176697 D catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 4175777..4176697 Shewanella sp. W3-18-1 4661387 YP_965019.1 CDS Sputw3181_3656 NC_008750.1 4176889 4177503 D KEGG: shm:Shewmr7_0412 DedA family protein; DedA family protein 4176889..4177503 Shewanella sp. W3-18-1 4661162 YP_965020.1 CDS Sputw3181_3657 NC_008750.1 4177709 4179337 D PFAM: chemotaxis sensory transducer; KEGG: ilo:IL1068 methyl-accepting chemotaxis protein with ligand-binding sensor domain and HAMP domain; methyl-accepting chemotaxis sensory transducer 4177709..4179337 Shewanella sp. W3-18-1 4661250 YP_965021.1 CDS Sputw3181_3658 NC_008750.1 4179445 4180863 R KEGG: she:Shewmr4_3545 hypothetical protein; hypothetical protein complement(4179445..4180863) Shewanella sp. W3-18-1 4661222 YP_965022.1 CDS Sputw3181_3659 NC_008750.1 4181005 4182045 R KEGG: shm:Shewmr7_0410 hypothetical protein; hypothetical protein complement(4181005..4182045) Shewanella sp. W3-18-1 4660776 YP_965023.1 CDS Sputw3181_3660 NC_008750.1 4182119 4182631 R PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO4195 PAP2 family protein; PA-phosphatase-like phosphoesterase complement(4182119..4182631) Shewanella sp. W3-18-1 4660747 YP_965024.1 CDS Sputw3181_3661 NC_008750.1 4182992 4183246 R KEGG: shm:Shewmr7_0408 hypothetical protein; hypothetical protein complement(4182992..4183246) Shewanella sp. W3-18-1 4660702 YP_965025.1 CDS Sputw3181_3662 NC_008750.1 4183565 4184050 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4183565..4184050 Shewanella sp. W3-18-1 4660397 YP_965026.1 CDS Sputw3181_3663 NC_008750.1 4184178 4185242 D PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: she:Shewmr4_3550 arginase/agmatinase/formiminoglutamase; arginase/agmatinase/formiminoglutamase 4184178..4185242 Shewanella sp. W3-18-1 4660662 YP_965027.1 CDS Sputw3181_3664 NC_008750.1 4185487 4186242 D TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4199 ubiquinone/menaquinone biosynthesis methlytransferase UbiE; ubiquinone/menaquinone biosynthesis methyltransferase 4185487..4186242 Shewanella sp. W3-18-1 4660596 YP_965028.1 CDS Sputw3181_3665 NC_008750.1 4186242 4186862 D PFAM: protein of unknown function DUF1243; KEGG: son:SO4200 conserved hypothetical protein; hypothetical protein 4186242..4186862 Shewanella sp. W3-18-1 4660372 YP_965029.1 CDS Sputw3181_3666 NC_008750.1 4186859 4188508 D TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: shm:Shewmr7_0403 2-polyprenylphenol 6-hydroxylase; 2-polyprenylphenol 6-hydroxylase 4186859..4188508 Shewanella sp. W3-18-1 4660551 YP_965030.1 CDS Sputw3181_3667 NC_008750.1 4188568 4188807 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: shm:Shewmr7_0402 twin-arginine translocation protein, TatA/E family subunit; twin arginine-targeting protein translocase 4188568..4188807 Shewanella sp. W3-18-1 4660534 YP_965031.1 CDS Sputw3181_3668 NC_008750.1 4188815 4189291 D TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: shm:Shewmr7_0401 twin-arginine translocation protein, TatB subunit; twin-arginine translocation protein subunit TatB 4188815..4189291 Shewanella sp. W3-18-1 4660510 YP_965032.1 CDS Sputw3181_3669 NC_008750.1 4189295 4190044 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: she:Shewmr4_3556 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 4189295..4190044 Shewanella sp. W3-18-1 4660314 YP_965033.1 CDS Sputw3181_3670 NC_008750.1 4190091 4190618 D KEGG: son:SO4205 hypothetical protein; hypothetical protein 4190091..4190618 Shewanella sp. W3-18-1 4659839 YP_965034.1 CDS Sputw3181_3671 NC_008750.1 4190618 4191421 D PFAM: TatD-related deoxyribonuclease; KEGG: shm:Shewmr7_0398 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease 4190618..4191421 Shewanella sp. W3-18-1 4660050 YP_965035.1 CDS Sputw3181_3672 NC_008750.1 4191414 4193288 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: son:SO4207 GGDEF domain protein; diguanylate cyclase 4191414..4193288 Shewanella sp. W3-18-1 4660005 YP_965036.1 CDS Sputw3181_3673 NC_008750.1 4193298 4194305 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 4193298..4194305 Shewanella sp. W3-18-1 4659987 YP_965037.1 CDS Sputw3181_3674 NC_008750.1 4194340 4194678 D KEGG: sfr:Sfri_1559 ISSod10, transposase OrfB; hypothetical protein 4194340..4194678 Shewanella sp. W3-18-1 4659802 YP_965038.1 CDS Sputw3181_3675 NC_008750.1 4201602 4202063 D PFAM: RNP-1 like RNA-binding protein; KEGG: shm:Shewmr7_0175 RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein 4201602..4202063 Shewanella sp. W3-18-1 4658539 YP_965039.1 CDS Sputw3181_3676 NC_008750.1 4202085 4202891 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(4202085..4202891) Shewanella sp. W3-18-1 4659789 YP_965040.1 CDS Sputw3181_3677 NC_008750.1 4203127 4204224 D catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 4203127..4204224 Shewanella sp. W3-18-1 4659778 YP_965041.1 CDS Sputw3181_3678 NC_008750.1 4204292 4204906 R negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR complement(4204292..4204906) Shewanella sp. W3-18-1 4659632 YP_965042.1 CDS Sputw3181_3679 NC_008750.1 4205051 4206157 D PFAM: fatty acid desaturase; KEGG: son:SO0197 fatty acid desaturase, family 1; stearoyl-CoA 9-desaturase 4205051..4206157 Shewanella sp. W3-18-1 4659685 YP_965043.1 CDS Sputw3181_3680 NC_008750.1 4206253 4207311 D catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 4206253..4207311 Shewanella sp. W3-18-1 4659855 YP_965044.1 CDS Sputw3181_3681 NC_008750.1 4207311 4208420 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 4207311..4208420 Shewanella sp. W3-18-1 4661454 YP_965045.1 CDS Sputw3181_3682 NC_008750.1 4208475 4210337 R PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0194 acyltransferase family protein; phospholipid/glycerol acyltransferase complement(4208475..4210337) Shewanella sp. W3-18-1 4659392 YP_965046.1 CDS Sputw3181_3683 NC_008750.1 4210328 4210939 R PFAM: regulatory protein, TetR; KEGG: she:Shewmr4_0172 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4210328..4210939) Shewanella sp. W3-18-1 4659381 YP_965047.1 CDS Sputw3181_3684 NC_008750.1 4211257 4211700 R PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_0166 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(4211257..4211700) Shewanella sp. W3-18-1 4659363 YP_965048.1 CDS Sputw3181_3685 NC_008750.1 4211708 4212520 R TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: shm:Shewmr7_0165 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase complement(4211708..4212520) Shewanella sp. W3-18-1 4659336 YP_965049.1 CDS nudE NC_008750.1 4212592 4213143 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(4212592..4213143) Shewanella sp. W3-18-1 4659106 YP_965050.1 CDS Sputw3181_3687 NC_008750.1 4213381 4220814 R PFAM: Fibronectin, type III domain protein; Ig family protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: son:SO0189 fibronectin type III domain protein; fibronectin type III domain-containing protein complement(4213381..4220814) Shewanella sp. W3-18-1 4659104 YP_965051.1 CDS Sputw3181_3688 NC_008750.1 4220877 4221476 R PFAM: phage Tail Collar domain protein; KEGG: sdn:Sden_3729 phage tail collar; phage tail collar domain-containing protein complement(4220877..4221476) Shewanella sp. W3-18-1 4659098 YP_965052.1 CDS Sputw3181_3689 NC_008750.1 4221702 4222199 R PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_06057 acetyltransferase; N-acetyltransferase GCN5 complement(4221702..4222199) Shewanella sp. W3-18-1 4659251 YP_965053.1 CDS Sputw3181_3690 NC_008750.1 4222186 4223361 R KEGG: son:SO0181 hypothetical protein; hypothetical protein complement(4222186..4223361) Shewanella sp. W3-18-1 4659221 YP_965054.1 CDS Sputw3181_3691 NC_008750.1 4223361 4224443 R PFAM: Phytanoyl-CoA dioxygenase; KEGG: son:SO0180 hypothetical protein; phytanoyl-CoA dioxygenase complement(4223361..4224443) Shewanella sp. W3-18-1 4659044 YP_965055.1 CDS Sputw3181_3692 NC_008750.1 4224421 4225008 R PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: son:SO0179 hypothetical protein; aspartyl/asparaginyl beta-hydroxylase complement(4224421..4225008) Shewanella sp. W3-18-1 4658873 YP_965056.1 CDS Sputw3181_3693 NC_008750.1 4225103 4225804 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shm:Shewmr7_0162 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase 4225103..4225804 Shewanella sp. W3-18-1 4658854 YP_965057.1 CDS Sputw3181_3694 NC_008750.1 4225838 4226599 R PFAM: type II secretion system protein N; KEGG: shm:Shewmr7_0161 type II secretion system protein N; type II secretion system protein N complement(4225838..4226599) Shewanella sp. W3-18-1 4658612 YP_965058.1 CDS Sputw3181_3695 NC_008750.1 4226610 4227086 R PFAM: General secretion pathway M protein; KEGG: son:SO0175 general secretion pathway protein M; general secretion pathway M protein complement(4226610..4227086) Shewanella sp. W3-18-1 4658808 YP_965059.1 CDS Sputw3181_3696 NC_008750.1 4227088 4228275 R TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: she:Shewmr4_0164 general secretion pathway protein L; general secretion pathway protein L complement(4227088..4228275) Shewanella sp. W3-18-1 4658595 YP_965060.1 CDS Sputw3181_3697 NC_008750.1 4228326 4229330 R PFAM: General secretion pathway protein K; KEGG: she:Shewmr4_0163 general secretion pathway protein K; general secretion pathway protein K complement(4228326..4229330) Shewanella sp. W3-18-1 4658770 YP_965061.1 CDS Sputw3181_3698 NC_008750.1 4229327 4230085 R TIGRFAM: general secretion pathway protein J; KEGG: son:SO0172 general secretion pathway protein J; general secretion pathway protein J complement(4229327..4230085) Shewanella sp. W3-18-1 4658583 YP_965062.1 CDS Sputw3181_3699 NC_008750.1 4230066 4230434 R TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: shm:Shewmr7_0156 general secretion pathway protein I; general secretion pathway protein I complement(4230066..4230434) Shewanella sp. W3-18-1 4658757 YP_965063.1 CDS Sputw3181_3700 NC_008750.1 4230421 4230993 R TIGRFAM: general secretion pathway protein H; KEGG: son:SO0170 general secretion pathway protein H; general secretion pathway protein H complement(4230421..4230993) Shewanella sp. W3-18-1 4658561 YP_965064.1 CDS Sputw3181_3701 NC_008750.1 4230995 4231429 R TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: shm:Shewmr7_0154 general secretion pathway protein G; general secretion pathway protein G complement(4230995..4231429) Shewanella sp. W3-18-1 4658555 YP_965065.1 CDS Sputw3181_3702 NC_008750.1 4231493 4232716 R TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: son:SO0168 general secretion pathway protein F; general secretion pathway protein F complement(4231493..4232716) Shewanella sp. W3-18-1 4658542 YP_965066.1 CDS Sputw3181_3703 NC_008750.1 4232720 4234285 R KEGG: shm:Shewmr7_0152 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E complement(4232720..4234285) Shewanella sp. W3-18-1 4658688 YP_965067.1 CDS Sputw3181_3704 NC_008750.1 4234278 4236395 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: shm:Shewmr7_0151 general secretion pathway protein D; general secretion pathway protein D complement(4234278..4236395) Shewanella sp. W3-18-1 4658457 YP_965068.1 CDS Sputw3181_3705 NC_008750.1 4236420 4237346 R TIGRFAM: general secretion pathway protein C; KEGG: she:Shewmr4_0155 general secretion pathway protein C; general secretion pathway protein C complement(4236420..4237346) Shewanella sp. W3-18-1 4658670 YP_965069.1 CDS Sputw3181_3706 NC_008750.1 4237599 4237997 D PFAM: RNA-binding S4 domain protein; KEGG: shm:Shewmr7_0149 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 4237599..4237997 Shewanella sp. W3-18-1 4658638 YP_965070.1 CDS hslO NC_008750.1 4238013 4238873 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 4238013..4238873 Shewanella sp. W3-18-1 4658159 YP_965071.1 CDS Sputw3181_3708 NC_008750.1 4239076 4240617 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 4239076..4240617 Shewanella sp. W3-18-1 4661101 YP_965072.1 CDS Sputw3181_3709 NC_008750.1 4240818 4241369 D KEGG: tde:TDE0520 hypothetical protein; hypothetical protein 4240818..4241369 Shewanella sp. W3-18-1 4658107 YP_965073.1 CDS Sputw3181_3710 NC_008750.1 4241381 4241833 D hypothetical protein 4241381..4241833 Shewanella sp. W3-18-1 4657716 YP_965074.1 CDS Sputw3181_3711 NC_008750.1 4241998 4242885 D KEGG: son:SOA0067 hypothetical protein; hypothetical protein 4241998..4242885 Shewanella sp. W3-18-1 4658074 YP_965075.1 CDS Sputw3181_3715 NC_008750.1 4244214 4244993 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: she:Shewmr4_0398 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein 4244214..4244993 Shewanella sp. W3-18-1 4658699 YP_965076.1 CDS Sputw3181_3716 NC_008750.1 4245115 4245618 D PFAM: AAA-4 family protein; KEGG: shm:Shewmr7_3628 putative transcriptional regulator; putative transcriptional regulator 4245115..4245618 Shewanella sp. W3-18-1 4658004 YP_965077.1 CDS Sputw3181_3717 NC_008750.1 4245626 4246204 R PFAM: HupE/UreJ protein; KEGG: she:Shewmr4_0396 HupE/UreJ protein; HupE/UreJ protein complement(4245626..4246204) Shewanella sp. W3-18-1 4657962 YP_965078.1 CDS Sputw3181_3718 NC_008750.1 4246350 4247072 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: she:Shewmr4_0395 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase complement(4246350..4247072) Shewanella sp. W3-18-1 4657687 YP_965079.1 CDS Sputw3181_3719 NC_008750.1 4247072 4247980 R TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO4306 integrase/recombinase XerC; tyrosine recombinase XerC complement(4247072..4247980) Shewanella sp. W3-18-1 4657679 YP_965080.1 CDS Sputw3181_3720 NC_008750.1 4248063 4248698 R PFAM: protein of unknown function DUF484; KEGG: shm:Shewmr7_3632 protein of unknown function DUF484; hypothetical protein complement(4248063..4248698) Shewanella sp. W3-18-1 4657677 YP_965081.1 CDS dapF NC_008750.1 4248695 4249522 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(4248695..4249522) Shewanella sp. W3-18-1 4657837 YP_965082.1 CDS Sputw3181_3722 NC_008750.1 4249599 4250843 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: shm:Shewmr7_3634 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(4249599..4250843) Shewanella sp. W3-18-1 4657805 YP_965083.1 CDS Sputw3181_3723 NC_008750.1 4250895 4251101 R KEGG: shm:Shewmr7_3635 hypothetical protein; hypothetical protein complement(4250895..4251101) Shewanella sp. W3-18-1 4661716 YP_965084.1 CDS Sputw3181_3724 NC_008750.1 4251169 4251498 D PFAM: Frataxin family protein; KEGG: shm:Shewmr7_3636 frataxin family protein; frataxin family protein 4251169..4251498 Shewanella sp. W3-18-1 4657764 YP_965085.1 CDS cyaA NC_008750.1 4251553 4253967 R catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase complement(4251553..4253967) Shewanella sp. W3-18-1 4661169 YP_965086.1 CDS hemC NC_008750.1 4254170 4255102 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4254170..4255102 Shewanella sp. W3-18-1 4661744 YP_965087.1 CDS Sputw3181_3727 NC_008750.1 4255107 4255847 D PFAM: Uroporphyrinogen III synthase HEM4; KEGG: son:SO4314 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 4255107..4255847 Shewanella sp. W3-18-1 4657797 YP_965088.1 CDS Sputw3181_3728 NC_008750.1 4255908 4257107 D PFAM: protein of unknown function DUF513, hemX; KEGG: shm:Shewmr7_3640 protein of unknown function DUF513, HemX; hypothetical protein 4255908..4257107 Shewanella sp. W3-18-1 4657886 YP_965089.1 CDS Sputw3181_3729 NC_008750.1 4257104 4258270 D PFAM: HemY domain protein; KEGG: she:Shewmr4_0385 HemY domain protein; HemY domain-containing protein 4257104..4258270 Shewanella sp. W3-18-1 4657888 YP_965090.1 CDS Sputw3181_3730 NC_008750.1 4258679 4266373 D TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; KEGG: shm:Shewmr7_3642 putative outer membrane adhesin like protein; outer membrane adhesin like protein 4258679..4266373 Shewanella sp. W3-18-1 4658006 YP_965091.1 CDS Sputw3181_3732 NC_008750.1 4266689 4267939 R PFAM: transposase, IS4 family protein; KEGG: sak:SAK_2050 IS10R, transposase; transposase, IS4 family protein complement(4266689..4267939) Shewanella sp. W3-18-1 4658696 YP_965092.1 CDS Sputw3181_3733 NC_008750.1 4269974 4271356 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_3644 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein 4269974..4271356 Shewanella sp. W3-18-1 4658052 YP_965093.1 CDS Sputw3181_3734 NC_008750.1 4271383 4272798 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: shm:Shewmr7_3645 type I secretion outer membrane protein, TolC family; TolC family type I secretion outer membrane protein 4271383..4272798 Shewanella sp. W3-18-1 4658232 YP_965094.1 CDS Sputw3181_3735 NC_008750.1 4272795 4273403 D PFAM: OmpA/MotB domain protein; KEGG: she:Shewmr4_0380 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 4272795..4273403 Shewanella sp. W3-18-1 4658240 YP_965095.1 CDS Sputw3181_3736 NC_008750.1 4273419 4274129 D KEGG: shm:Shewmr7_3647 hypothetical protein; hypothetical protein 4273419..4274129 Shewanella sp. W3-18-1 4658246 YP_965096.1 CDS Sputw3181_3737 NC_008750.1 4274139 4276058 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: shm:Shewmr7_3648 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 4274139..4276058 Shewanella sp. W3-18-1 4658258 YP_965097.1 CDS Sputw3181_3738 NC_008750.1 4277162 4279795 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: she:Shewmr4_0377 diguanylate cyclase/phosphodiesterase with GAF sensor; GAF sensor-containing diguanylate cyclase/phosphodiesterase 4277162..4279795 Shewanella sp. W3-18-1 4658643 YP_965098.1 CDS Sputw3181_3739 NC_008750.1 4279832 4281844 R TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: she:Shewmr4_0376 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep complement(4279832..4281844) Shewanella sp. W3-18-1 4658341 YP_965099.1 CDS Sputw3181_3740 NC_008750.1 4282054 4282311 D PFAM: protein of unknown function DUF526; KEGG: son:SO4329 hypothetical protein; hypothetical protein 4282054..4282311 Shewanella sp. W3-18-1 4658454 YP_965100.1 CDS Sputw3181_3741 NC_008750.1 4282516 4282872 D KEGG: shm:Shewmr7_3653 hypothetical protein; hypothetical protein 4282516..4282872 Shewanella sp. W3-18-1 4658404 YP_965101.1 CDS Sputw3181_3742 NC_008750.1 4283035 4284246 D PFAM: NnrS family protein; KEGG: sfr:Sfri_3037 NnrS family protein; NnrS family protein 4283035..4284246 Shewanella sp. W3-18-1 4658816 YP_965102.1 CDS Sputw3181_3743 NC_008750.1 4284230 4285639 D PFAM: cytochrome c552; KEGG: sfr:Sfri_3036 nitrite reductase (cytochrome; ammonia-forming); nitrite reductase 4284230..4285639 Shewanella sp. W3-18-1 4658916 YP_965103.1 CDS Sputw3181_3744 NC_008750.1 4286091 4287569 D PFAM: Inner membrane CreD family protein; KEGG: shm:Shewmr7_3656 inner membrane CreD family protein; hypothetical protein 4286091..4287569 Shewanella sp. W3-18-1 4658935 YP_965104.1 CDS Sputw3181_3745 NC_008750.1 4287663 4288472 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: shm:Shewmr7_3657 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 4287663..4288472 Shewanella sp. W3-18-1 4658622 YP_965105.1 CDS Sputw3181_3746 NC_008750.1 4288666 4289541 R PFAM: import inner membrane translocase, subunit Tim44; KEGG: son:SO4340 hypothetical protein; import inner membrane translocase subunit Tim44 complement(4288666..4289541) Shewanella sp. W3-18-1 4658594 YP_965106.1 CDS Sputw3181_3747 NC_008750.1 4290256 4291068 D hypothetical protein 4290256..4291068 Shewanella sp. W3-18-1 4658965 YP_965107.1 CDS Sputw3181_3748 NC_008750.1 4291693 4292211 R KEGG: bur:Bcep18194_B1335 hypothetical protein; hypothetical protein complement(4291693..4292211) Shewanella sp. W3-18-1 4659045 YP_965108.1 CDS Sputw3181_3749 NC_008750.1 4292259 4292879 R hypothetical protein complement(4292259..4292879) Shewanella sp. W3-18-1 4659031 YP_965109.1 CDS Sputw3181_3750 NC_008750.1 4293065 4294198 R PFAM: aminotransferase, class V; KEGG: son:SO4343 aminotransferase, class V; serine--pyruvate transaminase complement(4293065..4294198) Shewanella sp. W3-18-1 4659210 YP_965110.1 CDS Sputw3181_3751 NC_008750.1 4294439 4296049 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(4294439..4296049) Shewanella sp. W3-18-1 4659268 YP_965111.1 CDS Sputw3181_3752 NC_008750.1 4296052 4297911 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(4296052..4297911) Shewanella sp. W3-18-1 4659387 YP_965112.1 CDS ilvM NC_008750.1 4297969 4298226 R PFAM: amino acid-binding ACT domain protein; KEGG: shm:Shewmr7_3663 acetolactate synthase small subunit; acetolactate synthase 2 regulatory subunit complement(4297969..4298226) Shewanella sp. W3-18-1 4659136 YP_965113.1 CDS Sputw3181_3754 NC_008750.1 4298223 4299896 R catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit complement(4298223..4299896) Shewanella sp. W3-18-1 4659451 YP_965114.1 CDS Sputw3181_3755 NC_008750.1 4300508 4301986 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(4300508..4301986) Shewanella sp. W3-18-1 4659450 YP_965115.1 CDS Sputw3181_3756 NC_008750.1 4302183 4303091 D participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4302183..4303091 Shewanella sp. W3-18-1 4659462 YP_965116.1 CDS Sputw3181_3757 NC_008750.1 4303088 4304404 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: shm:Shewmr7_3667 protein of unknown function DUF21; hypothetical protein complement(4303088..4304404) Shewanella sp. W3-18-1 4659467 YP_965117.1 CDS Sputw3181_3758 NC_008750.1 4304942 4305352 R PFAM: protein of unknown function UPF0153; KEGG: she:Shewmr4_0357 protein of unknown function UPF0153; hypothetical protein complement(4304942..4305352) Shewanella sp. W3-18-1 4659496 YP_965118.1 CDS Sputw3181_3759 NC_008750.1 4305644 4306171 D PFAM: helix-hairpin-helix motif; KEGG: sdn:Sden_0291 ERCC4; helix-hairpin-helix DNA-binding motif-containing protein 4305644..4306171 Shewanella sp. W3-18-1 4659499 YP_965119.1 CDS Sputw3181_3760 NC_008750.1 4306200 4306955 R manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase complement(4306200..4306955) Shewanella sp. W3-18-1 4659503 YP_965120.1 CDS Sputw3181_3761 NC_008750.1 4307181 4308077 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0340 transcriptional regulator, LysR family; LysR family transcriptional regulator 4307181..4308077 Shewanella sp. W3-18-1 4659504 YP_965121.1 CDS Sputw3181_3762 NC_008750.1 4308181 4308657 D KEGG: shm:Shewmr7_0339 hypothetical protein; hypothetical protein 4308181..4308657 Shewanella sp. W3-18-1 4659513 YP_965122.1 CDS Sputw3181_3763 NC_008750.1 4308693 4310648 R KEGG: shm:Shewmr7_0338 hypothetical protein; hypothetical protein complement(4308693..4310648) Shewanella sp. W3-18-1 4659543 YP_965123.1 CDS Sputw3181_3764 NC_008750.1 4310648 4310875 R PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_0337 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(4310648..4310875) Shewanella sp. W3-18-1 4659856 YP_965124.1 CDS Sputw3181_3765 NC_008750.1 4311035 4312150 R PFAM: filamentation induced by cAMP protein Fic; KEGG: shm:Shewmr7_0336 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(4311035..4312150) Shewanella sp. W3-18-1 4660126 YP_965125.1 CDS Sputw3181_3766 NC_008750.1 4312463 4313266 D KEGG: son:SO0366 hypothetical protein; hypothetical protein 4312463..4313266 Shewanella sp. W3-18-1 4660138 YP_965126.1 CDS Sputw3181_3767 NC_008750.1 4313284 4314381 R PFAM: aminoglycoside phosphotransferase; KEGG: shm:Shewmr7_0333 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(4313284..4314381) Shewanella sp. W3-18-1 4660261 YP_965127.1 CDS Sputw3181_3768 NC_008750.1 4314374 4315246 R KEGG: she:Shewmr4_3611 hypothetical protein; hypothetical protein complement(4314374..4315246) Shewanella sp. W3-18-1 4660192 YP_965128.1 CDS Sputw3181_3769 NC_008750.1 4315448 4316977 R KEGG: shm:Shewmr7_0331 hypothetical protein; hypothetical protein complement(4315448..4316977) Shewanella sp. W3-18-1 4660199 YP_965129.1 CDS gmk NC_008750.1 4317231 4317854 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 4317231..4317854 Shewanella sp. W3-18-1 4660601 YP_965130.1 CDS rpoZ NC_008750.1 4317913 4318191 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 4317913..4318191 Shewanella sp. W3-18-1 4660386 YP_965131.1 CDS Sputw3181_3772 NC_008750.1 4318237 4320342 D KEGG: son:SO0359 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 4318237..4320342 Shewanella sp. W3-18-1 4660732 YP_965132.1 CDS Sputw3181_3773 NC_008750.1 4320368 4320751 D TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: son:SO0358 endoribonuclease L-PSP, putative; putative endoribonuclease L-PSP 4320368..4320751 Shewanella sp. W3-18-1 4660792 YP_965133.1 CDS Sputw3181_3774 NC_008750.1 4320991 4322655 D PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0355 AMP-binding protein; AMP-dependent synthetase and ligase 4320991..4322655 Shewanella sp. W3-18-1 4660818 YP_965134.1 CDS Sputw3181_3775 NC_008750.1 4322836 4323786 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: shm:Shewmr7_0325 Na+/Ca+ antiporter, CaCA family; CaCA family Na(+)/Ca(+) antiporter 4322836..4323786 Shewanella sp. W3-18-1 4660845 YP_965135.1 CDS Sputw3181_3776 NC_008750.1 4324128 4326542 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: hne:HNE_1653 TonB-dependent receptor; TonB-dependent receptor 4324128..4326542 Shewanella sp. W3-18-1 4660855 YP_965136.1 CDS Sputw3181_3777 NC_008750.1 4326904 4328025 R KEGG: shm:Shewmr7_0321 hypothetical protein; hypothetical protein complement(4326904..4328025) Shewanella sp. W3-18-1 4660975 YP_965137.1 CDS Sputw3181_3778 NC_008750.1 4328289 4328810 D PFAM: superoxide dismutase, copper/zinc binding; KEGG: vch:VC1583 superoxide dismutase, Cu-Zn; superoxide dismutase, copper/zinc binding 4328289..4328810 Shewanella sp. W3-18-1 4661546 YP_965138.1 CDS Sputw3181_3779 NC_008750.1 4328970 4330499 D KEGG: son:SO0349 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 4328970..4330499 Shewanella sp. W3-18-1 4661028 YP_965139.1 CDS Sputw3181_3780 NC_008750.1 4330601 4331497 D PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0348 acyltransferase family protein; putative acyltransferase 4330601..4331497 Shewanella sp. W3-18-1 4661513 YP_965140.1 CDS Sputw3181_3781 NC_008750.1 4331511 4332455 D PFAM: phospholipid/glycerol acyltransferase; KEGG: she:Shewmr4_3626 phospholipid/glycerol acyltransferase; putative acyltransferase 4331511..4332455 Shewanella sp. W3-18-1 4661402 YP_965141.1 CDS Sputw3181_3782 NC_008750.1 4332452 4332958 R PFAM: protein of unknown function DUF523; KEGG: she:Shewmr4_3627 protein of unknown function DUF523; hypothetical protein complement(4332452..4332958) Shewanella sp. W3-18-1 4661628 YP_965142.1 CDS Sputw3181_3783 NC_008750.1 4333259 4334026 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: shm:Shewmr7_0316 transcriptional regulator, GntR family; GntR family transcriptional regulator 4333259..4334026 Shewanella sp. W3-18-1 4661156 YP_965143.1 CDS prpB NC_008750.1 4334079 4334957 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 4334079..4334957 Shewanella sp. W3-18-1 4661149 YP_965144.1 CDS Sputw3181_3785 NC_008750.1 4335122 4336249 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 4335122..4336249 Shewanella sp. W3-18-1 4661154 YP_965145.2 CDS Sputw3181_3786 NC_008750.1 4336342 4338933 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 4336342..4338933 Shewanella sp. W3-18-1 4661152 YP_965146.1 CDS Sputw3181_3787 NC_008750.1 4339027 4340226 D TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: shm:Shewmr7_0312 putative AcnD-accessory protein PrpF; putative AcnD-accessory protein PrpF 4339027..4340226 Shewanella sp. W3-18-1 4661140 YP_965147.1 CDS Sputw3181_3788 NC_008750.1 4340281 4341144 D KEGG: sil:SPO1470 isocitrate lyase family protein; isocitrate lyase family protein 4340281..4341144 Shewanella sp. W3-18-1 4661121 YP_965148.1 CDS Sputw3181_3789 NC_008750.1 4341417 4345952 D KEGG: shm:Shewmr7_0311 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4341417..4345952 Shewanella sp. W3-18-1 4661085 YP_965149.1 CDS Sputw3181_3790 NC_008750.1 4346011 4347102 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(4346011..4347102) Shewanella sp. W3-18-1 4661019 YP_965150.1 CDS Sputw3181_3791 NC_008750.1 4347229 4347501 D PFAM: Modulator of Rho-dependent transcription termination; KEGG: shm:Shewmr7_0308 transcriptional antiterminator, Rof; transcriptional antiterminator Rof 4347229..4347501 Shewanella sp. W3-18-1 4661040 YP_965151.1 CDS Sputw3181_3792 NC_008750.1 4347515 4347856 D KEGG: son:SO0338 hypothetical protein; hypothetical protein 4347515..4347856 Shewanella sp. W3-18-1 4661871 YP_965152.1 CDS Sputw3181_3793 NC_008750.1 4347982 4348335 R PFAM: Endoribonuclease L-PSP; KEGG: son:SO0337 hypothetical translation initiation inhibitor, YjgF family; endoribonuclease L-PSP complement(4347982..4348335) Shewanella sp. W3-18-1 4661870 YP_965153.1 CDS Sputw3181_3794 NC_008750.1 4348400 4349929 R PFAM: Na+/H+ antiporter NhaC; KEGG: she:Shewmr4_3639 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(4348400..4349929) Shewanella sp. W3-18-1 4661863 YP_965154.1 CDS Sputw3181_3795 NC_008750.1 4350109 4350330 D PFAM: protein of unknown function DUF904; KEGG: shm:Shewmr7_0304 protein of unknown function DUF904; hypothetical protein 4350109..4350330 Shewanella sp. W3-18-1 4661852 YP_965155.1 CDS Sputw3181_3796 NC_008750.1 4350327 4350539 R PFAM: protein of unknown function DUF1107; KEGG: son:SO0334 hypothetical protein; hypothetical protein complement(4350327..4350539) Shewanella sp. W3-18-1 4661840 YP_965156.1 CDS Sputw3181_3797 NC_008750.1 4351009 4351617 R PFAM: DSBA oxidoreductase; KEGG: son:SO0333 thiol:disulfide interchange protein DsbA; DSBA oxidoreductase complement(4351009..4351617) Shewanella sp. W3-18-1 4661839 YP_965157.1 CDS Sputw3181_3798 NC_008750.1 4351742 4352779 R catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase complement(4351742..4352779) Shewanella sp. W3-18-1 4661794 YP_965158.1 CDS Sputw3181_3799 NC_008750.1 4352790 4353113 R KEGG: she:Shewmr4_3644 hypothetical protein; hypothetical protein complement(4352790..4353113) Shewanella sp. W3-18-1 4661824 YP_965159.1 CDS Sputw3181_3800 NC_008750.1 4353127 4354581 R PFAM: protein of unknown function UPF0061; KEGG: she:Shewmr4_3645 protein of unknown function UPF0061; hypothetical protein complement(4353127..4354581) Shewanella sp. W3-18-1 4661829 YP_965160.1 CDS Sputw3181_3801 NC_008750.1 4354592 4354885 R KEGG: shm:Shewmr7_0298 hypothetical protein; hypothetical protein complement(4354592..4354885) Shewanella sp. W3-18-1 4661780 YP_965161.1 CDS Sputw3181_3802 NC_008750.1 4355012 4355893 R KEGG: shm:Shewmr7_0297 hypothetical protein; hypothetical protein complement(4355012..4355893) Shewanella sp. W3-18-1 4661799 YP_965162.1 CDS Sputw3181_3803 NC_008750.1 4356165 4356524 D PFAM: DsrE family protein; KEGG: shm:Shewmr7_0296 DsrE family protein; DsrE family protein 4356165..4356524 Shewanella sp. W3-18-1 4661800 YP_965163.1 CDS Sputw3181_3804 NC_008750.1 4356663 4357064 D KEGG: shm:Shewmr7_0295 hypothetical protein; hypothetical protein 4356663..4357064 Shewanella sp. W3-18-1 4661788 YP_965164.1 CDS Sputw3181_3805 NC_008750.1 4357119 4358054 D KEGG: she:Shewmr4_3650 hypothetical protein; hypothetical protein 4357119..4358054 Shewanella sp. W3-18-1 4661732 YP_965165.1 CDS Sputw3181_3806 NC_008750.1 4358199 4358783 D KEGG: shm:Shewmr7_0293 hypothetical protein; hypothetical protein 4358199..4358783 Shewanella sp. W3-18-1 4661776 YP_965166.1 CDS Sputw3181_3807 NC_008750.1 4358890 4359891 R PFAM: periplasmic binding protein; KEGG: ppu:PP_2591 ferric siderophore ABC transporter, periplasmic siderophore-binding protein; periplasmic binding protein complement(4358890..4359891) Shewanella sp. W3-18-1 4661774 YP_965167.1 CDS Sputw3181_3808 NC_008750.1 4359888 4360670 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN2494 ferric siderophore ABC transporter, ATP-binding protein BauE; ABC transporter-like protein complement(4359888..4360670) Shewanella sp. W3-18-1 4661772 YP_965168.1 CDS Sputw3181_3809 NC_008750.1 4360667 4361572 R PFAM: transport system permease protein; KEGG: pen:PSEEN2495 ferric siderophore ABC transporter, permease protein BauC; transport system permease complement(4360667..4361572) Shewanella sp. W3-18-1 4661764 YP_965169.1 CDS Sputw3181_3810 NC_008750.1 4361614 4362555 R PFAM: transport system permease protein; ABC-3 protein; KEGG: ppu:PP_2594 ferric siderophore ABC transporter, permease protein; transport system permease complement(4361614..4362555) Shewanella sp. W3-18-1 4661130 YP_965170.1 CDS Sputw3181_3811 NC_008750.1 4362628 4363338 R KEGG: rha:RHA1_ro03859 probable tetracycline repressor; hypothetical protein complement(4362628..4363338) Shewanella sp. W3-18-1 4661751 YP_965171.1 CDS Sputw3181_3812 NC_008750.1 4363431 4365548 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rru:Rru_A2312 TonB-dependent receptor; TonB-dependent receptor complement(4363431..4365548) Shewanella sp. W3-18-1 4661737 YP_965172.1 CDS Sputw3181_3813 NC_008750.1 4365867 4367468 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bur:Bcep18194_B0675 ABC efflux pump, fused inner membrane and ATPase subunits; ABC transporter-like protein 4365867..4367468 Shewanella sp. W3-18-1 4661730 YP_965173.1 CDS Sputw3181_3814 NC_008750.1 4367465 4369024 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa28020 putative ABC transporter; ABC transporter-like protein 4367465..4369024 Shewanella sp. W3-18-1 4661738 YP_965174.1 CDS Sputw3181_3815 NC_008750.1 4369202 4369792 R KEGG: son:SO0321 hypothetical protein; hypothetical protein complement(4369202..4369792) Shewanella sp. W3-18-1 4661724 YP_965175.1 CDS Sputw3181_3816 NC_008750.1 4369875 4370912 R PFAM: acyltransferase 3; KEGG: she:Shewmr4_3653 acyltransferase 3; acyltransferase 3 complement(4369875..4370912) Shewanella sp. W3-18-1 4661725 YP_965176.1 CDS Sputw3181_3817 NC_008750.1 4370915 4372330 R KEGG: she:Shewmr4_3654 hypothetical protein; hypothetical protein complement(4370915..4372330) Shewanella sp. W3-18-1 4661695 YP_965177.1 CDS Sputw3181_3818 NC_008750.1 4372501 4372851 R PFAM: protein of unknown function DUF1232; KEGG: she:Shewmr4_3655 protein of unknown function DUF1232; hypothetical protein complement(4372501..4372851) Shewanella sp. W3-18-1 4661711 YP_965178.1 CDS Sputw3181_3819 NC_008750.1 4373453 4373557 D KEGG: shm:Shewmr7_0279 hypothetical protein; hypothetical protein 4373453..4373557 Shewanella sp. W3-18-1 4661709 YP_965179.1 CDS Sputw3181_3820 NC_008750.1 4373980 4375590 D KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 4373980..4375590 Shewanella sp. W3-18-1 4661703 YP_965180.1 CDS Sputw3181_3821 NC_008750.1 4375649 4377811 D PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: she:Shewmr4_3667 ornithine decarboxylase; ornithine decarboxylase 4375649..4377811 Shewanella sp. W3-18-1 4661052 YP_965181.1 CDS potE NC_008750.1 4377896 4379215 D catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 4377896..4379215 Shewanella sp. W3-18-1 4661537 YP_965182.1 CDS Sputw3181_3823 NC_008750.1 4379340 4380494 D PFAM: porin, Gram-negative type; KEGG: she:Shewmr4_3669 porin, gram-negative type; porin 4379340..4380494 Shewanella sp. W3-18-1 4661683 YP_965183.1 CDS Sputw3181_3824 NC_008750.1 4380739 4383111 R PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: son:SO0311 hypothetical Fe-S oxidoreductase; hypothetical protein complement(4380739..4383111) Shewanella sp. W3-18-1 4661674 YP_965184.1 CDS Sputw3181_3825 NC_008750.1 4383313 4383723 R KEGG: shm:Shewmr7_0274 hypothetical protein; hypothetical protein complement(4383313..4383723) Shewanella sp. W3-18-1 4661677 YP_965185.1 CDS Sputw3181_3826 NC_008750.1 4383882 4385102 D PFAM: protein of unknown function DUF1212; KEGG: son:SO0308 hypothetical protein; hypothetical protein 4383882..4385102 Shewanella sp. W3-18-1 4661617 YP_965186.1 CDS Sputw3181_3827 NC_008750.1 4385306 4386955 D KEGG: she:Shewmr4_3673 hypothetical protein; hypothetical protein 4385306..4386955 Shewanella sp. W3-18-1 4661647 YP_965187.1 CDS Sputw3181_3828 NC_008750.1 4386987 4387706 R PFAM: ThiJ/PfpI domain protein; KEGG: lbl:LBL_2610 transcriptional regulator, ThiJ/PfpI family protein; ThiJ/PfpI domain-containing protein complement(4386987..4387706) Shewanella sp. W3-18-1 4661650 YP_965188.1 CDS Sputw3181_3829 NC_008750.1 4387950 4388561 D PFAM: regulatory protein, TetR; KEGG: btk:BT9727_2867 transcriptional regulator, TetR family; TetR family transcriptional regulator 4387950..4388561 Shewanella sp. W3-18-1 4661610 YP_965189.1 CDS Sputw3181_3830 NC_008750.1 4388600 4388854 R KEGG: sdn:Sden_0547 hypothetical protein; hypothetical protein complement(4388600..4388854) Shewanella sp. W3-18-1 4661613 YP_965190.1 CDS Sputw3181_3831 NC_008750.1 4388866 4389369 R KEGG: sdn:Sden_0546 putative orphan protein; hypothetical protein complement(4388866..4389369) Shewanella sp. W3-18-1 4661616 YP_965191.1 CDS Sputw3181_3832 NC_008750.1 4389379 4389702 R KEGG: sdn:Sden_0545 hypothetical protein; hypothetical protein complement(4389379..4389702) Shewanella sp. W3-18-1 4661550 YP_965192.1 CDS Sputw3181_3833 NC_008750.1 4390492 4391334 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: shm:Shewmr7_0262 protein of unknown function UPF0011; uroporphyrin-III C/tetrapyrrole methyltransferase complement(4390492..4391334) Shewanella sp. W3-18-1 4658197 YP_965193.1 CDS Sputw3181_3834 NC_008750.1 4391423 4393273 D PFAM: LppC family lipoprotein; KEGG: she:Shewmr4_3684 LppC family lipoprotein; LppC family lipoprotein 4391423..4393273 Shewanella sp. W3-18-1 4661539 YP_965194.1 CDS Sputw3181_3835 NC_008750.1 4393270 4393596 D PFAM: protein of unknown function UPF0102; KEGG: shm:Shewmr7_0260 protein of unknown function UPF0102; hypothetical protein 4393270..4393596 Shewanella sp. W3-18-1 4661598 YP_965195.1 CDS Sputw3181_3836 NC_008750.1 4393689 4394282 D TIGRFAM: phosphoheptose isomerase; KEGG: shm:Shewmr7_0259 phosphoheptose isomerase; phosphoheptose isomerase 4393689..4394282 Shewanella sp. W3-18-1 4661576 YP_965196.1 CDS Sputw3181_3837 NC_008750.1 4394279 4394845 D PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: shm:Shewmr7_0258 transport-associated; transport-associated 4394279..4394845 Shewanella sp. W3-18-1 4661605 YP_965197.1 CDS Sputw3181_3838 NC_008750.1 4394866 4395789 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: shm:Shewmr7_0257 protein of unknown function DUF6, transmembrane; hypothetical protein complement(4394866..4395789) Shewanella sp. W3-18-1 4661601 YP_965198.1 CDS Sputw3181_3839 NC_008750.1 4395909 4396781 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0256 transcriptional regulator, LysR family; LysR family transcriptional regulator 4395909..4396781 Shewanella sp. W3-18-1 4661578 YP_965199.1 CDS Sputw3181_3840 NC_008750.1 4396851 4397849 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(4396851..4397849) Shewanella sp. W3-18-1 4661581 YP_965200.1 CDS Sputw3181_3841 NC_008750.1 4397894 4398574 R TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shm:Shewmr7_0254 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(4397894..4398574) Shewanella sp. W3-18-1 4661561 YP_965201.1 CDS Sputw3181_3842 NC_008750.1 4398579 4399289 R PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; KEGG: shm:Shewmr7_0253 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(4398579..4399289) Shewanella sp. W3-18-1 4661569 YP_965202.1 CDS Sputw3181_3843 NC_008750.1 4399519 4399884 D KEGG: shm:Shewmr7_0252 hypothetical protein; hypothetical protein 4399519..4399884 Shewanella sp. W3-18-1 4661556 YP_965203.1 CDS Sputw3181_3844 NC_008750.1 4400087 4400926 R KEGG: she:Shewmr4_3695 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase complement(4400087..4400926) Shewanella sp. W3-18-1 4661540 YP_965204.1 CDS Sputw3181_3845 NC_008750.1 4400975 4402366 R PFAM: Sporulation domain protein; KEGG: son:SO0288 DamX domain protein; sporulation domain-containing protein complement(4400975..4402366) Shewanella sp. W3-18-1 4660345 YP_965205.1 CDS aroB NC_008750.1 4402385 4403464 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(4402385..4403464) Shewanella sp. W3-18-1 4661533 YP_965206.1 CDS aroK NC_008750.1 4403470 4403985 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(4403470..4403985) Shewanella sp. W3-18-1 4661506 YP_965207.1 CDS Sputw3181_3848 NC_008750.1 4404202 4406253 R TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: she:Shewmr4_3699 type IV pilus secretin PilQ; type IV pilus secretin PilQ complement(4404202..4406253) Shewanella sp. W3-18-1 4661511 YP_965208.1 CDS Sputw3181_3849 NC_008750.1 4406275 4406793 R PFAM: Pilus assembly protein, PilQ; KEGG: shm:Shewmr7_0245 pilus assembly protein, PilQ; pilus assembly protein, PilQ complement(4406275..4406793) Shewanella sp. W3-18-1 4661503 YP_965209.1 CDS Sputw3181_3850 NC_008750.1 4406790 4407416 R PFAM: Pilus assembly protein, PilO; KEGG: shm:Shewmr7_0244 pilus assembly protein, PilO; pilus assembly protein, PilO complement(4406790..4407416) Shewanella sp. W3-18-1 4661490 YP_965210.1 CDS Sputw3181_3852 NC_008750.1 4407657 4408907 D PFAM: transposase, IS4 family protein; KEGG: sak:SAK_2050 IS10R, transposase; transposase, IS4 family protein 4407657..4408907 Shewanella sp. W3-18-1 4658156 YP_965211.1 CDS Sputw3181_3853 NC_008750.1 4408891 4409334 R PFAM: Fimbrial assembly family protein; KEGG: shm:Shewmr7_0243 fimbrial assembly family protein; fimbrial assembly family protein complement(4408891..4409334) Shewanella sp. W3-18-1 4661499 YP_965212.1 CDS Sputw3181_3854 NC_008750.1 4409322 4410401 R TIGRFAM: type IV pilus assembly protein PilM; KEGG: son:SO0281 type IV pilus biogenesis protein PilM; type IV pilus assembly protein PilM complement(4409322..4410401) Shewanella sp. W3-18-1 4661491 YP_965213.1 CDS Sputw3181_3855 NC_008750.1 4410590 4413109 D TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: shm:Shewmr7_0241 penicillin-binding protein, 1A family; 1A family penicillin-binding protein 4410590..4413109 Shewanella sp. W3-18-1 4661479 YP_965214.1 CDS Sputw3181_3856 NC_008750.1 4413192 4414559 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(4413192..4414559) Shewanella sp. W3-18-1 4661476 YP_965215.1 CDS Sputw3181_3857 NC_008750.1 4414652 4415875 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(4414652..4415875) Shewanella sp. W3-18-1 4661468 YP_965216.1 CDS Sputw3181_3858 NC_008750.1 4415935 4416840 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(4415935..4416840) Shewanella sp. W3-18-1 4661453 YP_965217.1 CDS Sputw3181_3859 NC_008750.1 4416853 4417635 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(4416853..4417635) Shewanella sp. W3-18-1 4661438 YP_965218.1 CDS argC NC_008750.1 4417667 4418719 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(4417667..4418719) Shewanella sp. W3-18-1 4661436 YP_965219.1 CDS Sputw3181_3861 NC_008750.1 4419271 4421940 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4419271..4421940 Shewanella sp. W3-18-1 4661430 YP_965220.1 CDS Sputw3181_3862 NC_008750.1 4421940 4422485 D PFAM: protein of unknown function DUF1439; KEGG: shm:Shewmr7_0234 protein of unknown function DUF1439; hypothetical protein 4421940..4422485 Shewanella sp. W3-18-1 4661429 YP_965221.1 CDS Sputw3181_3863 NC_008750.1 4422576 4423850 R TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: son:SO0272 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA complement(4422576..4423850) Shewanella sp. W3-18-1 4661415 YP_965222.1 CDS Sputw3181_3864 NC_008750.1 4429905 4430810 R TIGRFAM: DNA binding domain, excisionase family; KEGG: she:Shewmr4_3713 DNA binding domain, excisionase family; DNA binding domain-containing protein complement(4429905..4430810) Shewanella sp. W3-18-1 4658118 YP_965223.1 CDS Sputw3181_3865 NC_008750.1 4430873 4431826 R PFAM: formate dehydrogenase, subunit FdhD; KEGG: she:Shewmr4_3714 formate dehydrogenase, subunit FdhD; formate dehydrogenase subunit FdhD complement(4430873..4431826) Shewanella sp. W3-18-1 4661419 YP_965224.1 CDS Sputw3181_3866 NC_008750.1 4432076 4432540 D KEGG: son:SO4504 hypothetical protein; hypothetical protein 4432076..4432540 Shewanella sp. W3-18-1 4661410 YP_965225.1 CDS Sputw3181_3867 NC_008750.1 4432540 4433196 D KEGG: shm:Shewmr7_3787 hypothetical protein; hypothetical protein 4432540..4433196 Shewanella sp. W3-18-1 4661412 YP_965226.1 CDS Sputw3181_3868 NC_008750.1 4433384 4435045 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4506 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 4433384..4435045 Shewanella sp. W3-18-1 4661409 YP_965227.1 CDS Sputw3181_3869 NC_008750.1 4435056 4435733 D PFAM: cytoplasmic chaperone TorD family protein; KEGG: shm:Shewmr7_3789 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 4435056..4435733 Shewanella sp. W3-18-1 4661401 YP_965228.1 CDS Sputw3181_3870 NC_008750.1 4435860 4436090 D KEGG: son:SO4508 hypothetical protein; hypothetical protein 4435860..4436090 Shewanella sp. W3-18-1 4661416 YP_965229.1 CDS Sputw3181_3871 NC_008750.1 4436109 4438958 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4509 formate dehydrogenase, alpha subunit; molybdopterin oxidoreductase 4436109..4438958 Shewanella sp. W3-18-1 4661381 YP_965230.1 CDS Sputw3181_3872 NC_008750.1 4438985 4439581 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4510 formate dehydrogenase, iron-sulfur subunit; 4Fe-4S ferredoxin 4438985..4439581 Shewanella sp. W3-18-1 4661087 YP_965231.1 CDS Sputw3181_3873 NC_008750.1 4439631 4440659 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: shm:Shewmr7_3793 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 4439631..4440659 Shewanella sp. W3-18-1 4661394 YP_965232.1 CDS Sputw3181_3874 NC_008750.1 4441047 4441247 D KEGG: son:SO4512 hypothetical protein; hypothetical protein 4441047..4441247 Shewanella sp. W3-18-1 4661046 YP_965233.1 CDS Sputw3181_3875 NC_008750.1 4441265 4444117 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: shm:Shewmr7_3795 twin-arginine translocation pathway signal; molybdopterin oxidoreductase 4441265..4444117 Shewanella sp. W3-18-1 4661134 YP_965234.1 CDS Sputw3181_3876 NC_008750.1 4444147 4444716 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_3796 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4444147..4444716 Shewanella sp. W3-18-1 4661393 YP_965235.1 CDS Sputw3181_3877 NC_008750.1 4444796 4445779 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: she:Shewmr4_3726 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 4444796..4445779 Shewanella sp. W3-18-1 4661106 YP_965236.1 CDS Sputw3181_3878 NC_008750.1 4445873 4447930 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_3798 TonB-dependent receptor; TonB-dependent receptor complement(4445873..4447930) Shewanella sp. W3-18-1 4661026 YP_965237.1 CDS Sputw3181_3879 NC_008750.1 4448261 4448899 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_3819 methyltransferase type 11; type 11 methyltransferase complement(4448261..4448899) Shewanella sp. W3-18-1 4661356 YP_965238.1 CDS Sputw3181_3880 NC_008750.1 4448970 4449323 R KEGG: she:Shewmr4_3747 hypothetical protein; hypothetical protein complement(4448970..4449323) Shewanella sp. W3-18-1 4660426 YP_965239.1 CDS Sputw3181_3881 NC_008750.1 4449630 4451750 D KEGG: son:SO4552 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 4449630..4451750 Shewanella sp. W3-18-1 4661058 YP_965240.1 CDS Sputw3181_3882 NC_008750.1 4452111 4452824 R PFAM: DTW domain containing protein; KEGG: son:SO4554 hypothetical protein; DTW domain-containing protein complement(4452111..4452824) Shewanella sp. W3-18-1 4661051 YP_965241.1 CDS Sputw3181_3883 NC_008750.1 4452840 4454048 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4555 drug resistance transporter, Bcr/CflA family protein; Bcr/CflA subfamily drug resistance transporter complement(4452840..4454048) Shewanella sp. W3-18-1 4661345 YP_965242.1 CDS Sputw3181_3884 NC_008750.1 4454162 4455133 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4556 transcriptional regulator, LysR family; LysR family transcriptional regulator 4454162..4455133 Shewanella sp. W3-18-1 4661367 YP_965243.1 CDS Sputw3181_3885 NC_008750.1 4455236 4457107 R PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: son:SO4557 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(4455236..4457107) Shewanella sp. W3-18-1 4661091 YP_965244.1 CDS Sputw3181_3886 NC_008750.1 4457470 4457799 D KEGG: shm:Shewmr7_3826 hypothetical protein; hypothetical protein 4457470..4457799 Shewanella sp. W3-18-1 4661376 YP_965245.1 CDS Sputw3181_3887 NC_008750.1 4457809 4459263 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: she:Shewmr4_3754 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(4457809..4459263) Shewanella sp. W3-18-1 4661192 YP_965246.1 CDS Sputw3181_3888 NC_008750.1 4459298 4460005 R KEGG: shm:Shewmr7_3828 hypothetical protein; hypothetical protein complement(4459298..4460005) Shewanella sp. W3-18-1 4661109 YP_965247.1 CDS Sputw3181_3889 NC_008750.1 4460195 4460725 D KEGG: she:Shewmr4_3756 hypothetical protein; hypothetical protein 4460195..4460725 Shewanella sp. W3-18-1 4661366 YP_965248.1 CDS Sputw3181_3890 NC_008750.1 4460823 4461281 D PFAM: protein of unknown function DUF1332; KEGG: shm:Shewmr7_3830 protein of unknown function DUF1332; hypothetical protein 4460823..4461281 Shewanella sp. W3-18-1 4661276 YP_965249.1 CDS Sputw3181_3891 NC_008750.1 4461264 4462526 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH complement(4461264..4462526) Shewanella sp. W3-18-1 4661336 YP_965250.1 CDS Sputw3181_3892 NC_008750.1 4462776 4463207 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: son:SO4567 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4462776..4463207 Shewanella sp. W3-18-1 4661207 YP_965251.1 CDS Sputw3181_3893 NC_008750.1 4463485 4464426 R PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4568 formate-dependent nitrite reductase, nrfD protein; polysulfide reductase, NrfD complement(4463485..4464426) Shewanella sp. W3-18-1 4661208 YP_965252.1 CDS Sputw3181_3894 NC_008750.1 4464423 4465109 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: she:Shewmr4_3763 twin-arginine translocation pathway signal; 4Fe-4S ferredoxin complement(4464423..4465109) Shewanella sp. W3-18-1 4661219 YP_965253.1 CDS Sputw3181_3895 NC_008750.1 4465114 4465578 R KEGG: she:Shewmr4_3764 formate-dependent nitrite reductase; formate-dependent nitrite reductase complement(4465114..4465578) Shewanella sp. W3-18-1 4661312 YP_965254.1 CDS Sputw3181_3896 NC_008750.1 4465656 4466132 R KEGG: she:Shewmr4_3765 hypothetical protein; hypothetical protein complement(4465656..4466132) Shewanella sp. W3-18-1 4661333 YP_965255.1 CDS Sputw3181_3897 NC_008750.1 4466544 4467512 D PFAM: regulatory protein, LysR; KEGG: shm:Shewmr7_3839 transcriptional regulator, LysR family; LysR family transcriptional regulator 4466544..4467512 Shewanella sp. W3-18-1 4661320 YP_965256.1 CDS Sputw3181_3898 NC_008750.1 4467695 4469416 D SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 4467695..4469416 Shewanella sp. W3-18-1 4661329 YP_965257.1 CDS Sputw3181_3899 NC_008750.1 4469416 4470204 D PFAM: alpha/beta hydrolase fold; KEGG: shm:Shewmr7_3841 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 4469416..4470204 Shewanella sp. W3-18-1 4661266 YP_965258.1 CDS Sputw3181_3900 NC_008750.1 4470232 4471326 D catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 4470232..4471326 Shewanella sp. W3-18-1 4661314 YP_965259.1 CDS Sputw3181_3901 NC_008750.1 4471328 4472740 D TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO4576 O-succinylbenzoic acid--CoA ligase; o-succinylbenzoate--CoA ligase 4471328..4472740 Shewanella sp. W3-18-1 4661303 YP_965260.1 CDS Sputw3181_3902 NC_008750.1 4472756 4473976 R PFAM: EAL domain protein; response regulator receiver; KEGG: pau:PA14_12810 probable two-component response regulator; response regulator receiver modulated diguanylate phosphodiesterase complement(4472756..4473976) Shewanella sp. W3-18-1 4661267 YP_965261.1 CDS Sputw3181_3903 NC_008750.1 4474306 4474932 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pfo:Pfl_4515 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 4474306..4474932 Shewanella sp. W3-18-1 4661291 YP_965262.1 CDS Sputw3181_3904 NC_008750.1 4474929 4478498 D KEGG: psb:Psyr_2113 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold domain protein; SMART: extracellular solute-binding protein, family 3; multi-sensor hybrid histidine kinase 4474929..4478498 Shewanella sp. W3-18-1 4661301 YP_965263.1 CDS Sputw3181_3905 NC_008750.1 4478555 4479235 R PFAM: pili assembly chaperone; KEGG: rme:Rmet_1663 pili assembly chaperone; pili assembly chaperone complement(4478555..4479235) Shewanella sp. W3-18-1 4661271 YP_965264.1 CDS Sputw3181_3906 NC_008750.1 4479255 4480580 R KEGG: yps:YPTB0157 hypothetical protein; hypothetical protein complement(4479255..4480580) Shewanella sp. W3-18-1 4661288 YP_965265.1 CDS Sputw3181_3907 NC_008750.1 4480591 4483110 R PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pae:PA2130 probable fimbrial biogenesis usher protein; fimbrial biogenesis outer membrane usher protein complement(4480591..4483110) Shewanella sp. W3-18-1 4661261 YP_965266.1 CDS Sputw3181_3908 NC_008750.1 4483191 4483937 R PFAM: pili assembly chaperone; KEGG: pau:PA14_37040 chaperone CupA2; pili assembly chaperone complement(4483191..4483937) Shewanella sp. W3-18-1 4661252 YP_965267.1 CDS Sputw3181_3909 NC_008750.1 4484006 4484536 R PFAM: Fimbrial protein; KEGG: bam:Bamb_2833 fimbrial protein; fimbrial protein complement(4484006..4484536) Shewanella sp. W3-18-1 4661263 YP_965268.1 CDS Sputw3181_3910 NC_008750.1 4486067 4486924 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(4486067..4486924) Shewanella sp. W3-18-1 4661239 YP_965269.1 CDS Sputw3181_3911 NC_008750.1 4487172 4488137 R PFAM: protein of unknown function DUF214; KEGG: she:Shewmr4_3772 protein of unknown function DUF214; hypothetical protein complement(4487172..4488137) Shewanella sp. W3-18-1 4661231 YP_965270.1 CDS Sputw3181_3912 NC_008750.1 4488134 4488850 R KEGG: shm:Shewmr7_3846 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE complement(4488134..4488850) Shewanella sp. W3-18-1 4661234 YP_965271.1 CDS Sputw3181_3913 NC_008750.1 4488854 4490296 R KEGG: son:SO4586 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(4488854..4490296) Shewanella sp. W3-18-1 4661191 YP_965272.1 CDS Sputw3181_3914 NC_008750.1 4490510 4491175 D TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: she:Shewmr4_3775 putative methyltransferase; putative methyltransferase 4490510..4491175 Shewanella sp. W3-18-1 4661226 YP_965273.1 CDS Sputw3181_3915 NC_008750.1 4491159 4491434 D PFAM: protein of unknown function DUF1145; KEGG: son:SO4588 hypothetical protein; hypothetical protein 4491159..4491434 Shewanella sp. W3-18-1 4661224 YP_965274.1 CDS Sputw3181_3916 NC_008750.1 4491509 4492072 R PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO4591 tetraheme cytochrome c; NapC/NirT cytochrome c domain-containing protein complement(4491509..4492072) Shewanella sp. W3-18-1 4661212 YP_965275.1 CDS Sputw3181_3917 NC_008750.1 4492560 4493000 D KEGG: son:SOA0156 hypothetical protein; hypothetical protein 4492560..4493000 Shewanella sp. W3-18-1 4659086 YP_965276.1 CDS Sputw3181_3918 NC_008750.1 4493252 4493512 D KEGG: son:SOA0155 hypothetical protein; hypothetical protein 4493252..4493512 Shewanella sp. W3-18-1 4661193 YP_965277.1 CDS Sputw3181_3919 NC_008750.1 4493534 4495072 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SOA0154 heavy metal efflux protein, putative; RND family efflux transporter MFP subunit 4493534..4495072 Shewanella sp. W3-18-1 4659088 YP_965278.1 CDS Sputw3181_3920 NC_008750.1 4495082 4498231 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SOA0153 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 4495082..4498231 Shewanella sp. W3-18-1 4660771 YP_965279.1 CDS Sputw3181_3921 NC_008750.1 4498327 4499898 R KEGG: gme:Gmet_1465 hypothetical protein; hypothetical protein complement(4498327..4499898) Shewanella sp. W3-18-1 4661473 YP_965280.1 CDS Sputw3181_3922 NC_008750.1 4500221 4501780 D PFAM: AbgT putative transporter; short chain fatty acid transporter; KEGG: son:SO0160 transporter, putative; transporter AbgT 4500221..4501780 Shewanella sp. W3-18-1 4660626 YP_965281.1 CDS Sputw3181_3923 NC_008750.1 4501794 4502279 D hypothetical protein 4501794..4502279 Shewanella sp. W3-18-1 4660620 YP_965282.1 CDS Sputw3181_3924 NC_008750.1 4502734 4503984 D PFAM: sodium:dicarboxylate symporter; KEGG: she:Shewmr4_0147 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 4502734..4503984 Shewanella sp. W3-18-1 4660383 YP_965283.1 CDS Sputw3181_3925 NC_008750.1 4504237 4505352 D KEGG: shm:Shewmr7_0141 hypothetical protein; hypothetical protein 4504237..4505352 Shewanella sp. W3-18-1 4660380 YP_965284.1 CDS Sputw3181_3926 NC_008750.1 4505512 4507503 D PFAM: peptidase M14, carboxypeptidase A; KEGG: she:Shewmr4_0145 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 4505512..4507503 Shewanella sp. W3-18-1 4660375 YP_965285.1 CDS Sputw3181_3927 NC_008750.1 4507529 4508296 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_0139 methyltransferase type 11; type 12 methyltransferase complement(4507529..4508296) Shewanella sp. W3-18-1 4660583 YP_965286.1 CDS Sputw3181_3928 NC_008750.1 4508571 4509344 D KEGG: shm:Shewmr7_0138 lipoprotein, putative; putative lipoprotein 4508571..4509344 Shewanella sp. W3-18-1 4660562 YP_965287.1 CDS Sputw3181_3929 NC_008750.1 4509619 4510089 D KEGG: shm:Shewmr7_0137 hypothetical protein; hypothetical protein 4509619..4510089 Shewanella sp. W3-18-1 4660355 YP_965288.1 CDS Sputw3181_3930 NC_008750.1 4510152 4510586 D hypothetical protein 4510152..4510586 Shewanella sp. W3-18-1 4660338 YP_965289.1 CDS Sputw3181_3931 NC_008750.1 4510683 4512293 D KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 4510683..4512293 Shewanella sp. W3-18-1 4659824 YP_965290.1 CDS Sputw3181_3932 NC_008750.1 4513020 4513550 R KEGG: vch:VCA0487 hypothetical protein; hypothetical protein complement(4513020..4513550) Shewanella sp. W3-18-1 4660012 YP_965291.1 CDS Sputw3181_3933 NC_008750.1 4513547 4513816 R KEGG: vch:VCA0486 hypothetical protein; hypothetical protein complement(4513547..4513816) Shewanella sp. W3-18-1 4661280 YP_965292.1 CDS Sputw3181_3934 NC_008750.1 4514193 4514747 R PFAM: glycosyl transferase, family 51; KEGG: gbe:GbCGDNIH1_0281 multimodular transpeptidase-transglycosylase PBP 1A; glycosyl transferase family protein complement(4514193..4514747) Shewanella sp. W3-18-1 4659797 YP_965293.1 CDS Sputw3181_3935 NC_008750.1 4515703 4516431 R KEGG: son:SO0148 hypothetical protein; hypothetical protein complement(4515703..4516431) Shewanella sp. W3-18-1 4659938 YP_965294.1 CDS Sputw3181_3936 NC_008750.1 4516903 4517286 R PFAM: Excinuclease ABC, C subunit domain protein; KEGG: son:SO0145 hypothetical URI domain endonuclease; excinuclease ABC subunit C complement(4516903..4517286) Shewanella sp. W3-18-1 4661196 YP_965295.1 CDS Sputw3181_3937 NC_008750.1 4517297 4519432 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: she:Shewmr4_0136 oligopeptidase B; oligopeptidase B complement(4517297..4519432) Shewanella sp. W3-18-1 4659914 YP_965296.1 CDS ribB NC_008750.1 4520017 4520670 D DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 4520017..4520670 Shewanella sp. W3-18-1 4659434 YP_965297.1 CDS Sputw3181_3939 NC_008750.1 4521162 4524395 D KEGG: shm:Shewmr7_0128 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 4521162..4524395 Shewanella sp. W3-18-1 4661752 YP_965298.1 CDS Sputw3181_3940 NC_008750.1 4524458 4524994 R PFAM: Ferritin, Dps family protein; KEGG: son:SO0139 ferritin; Ferritin, Dps family protein complement(4524458..4524994) Shewanella sp. W3-18-1 4659420 YP_965299.1 CDS Sputw3181_3941 NC_008750.1 4525336 4526589 D TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: shm:Shewmr7_0126 molybdenum cofactor synthesis domain; molybdenum cofactor synthesis domain-containing protein 4525336..4526589 Shewanella sp. W3-18-1 4661784 YP_965300.1 CDS Sputw3181_3942 NC_008750.1 4526602 4527360 D ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 4526602..4527360 Shewanella sp. W3-18-1 4659350 YP_965301.1 CDS Sputw3181_3943 NC_008750.1 4527428 4528090 D KEGG: she:Shewmr4_0130 hypothetical protein; hypothetical protein 4527428..4528090 Shewanella sp. W3-18-1 4661691 YP_965302.1 CDS Sputw3181_3944 NC_008750.1 4528211 4529284 R PFAM: protein of unknown function DUF890; KEGG: shm:Shewmr7_0122 protein of unknown function DUF890; putative SAM-dependent methyltransferase complement(4528211..4529284) Shewanella sp. W3-18-1 4661330 YP_965303.1 CDS Sputw3181_3945 NC_008750.1 4529341 4529763 R PFAM: flagellar basal body-associated protein FliL; KEGG: she:Shewmr4_0127 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein complement(4529341..4529763) Shewanella sp. W3-18-1 4659309 YP_965304.1 CDS Sputw3181_3946 NC_008750.1 4529878 4530438 D PFAM: Chorismate lyase; KEGG: son:SO0131 putative chorismate--pyruvate lyase; chorismate lyase 4529878..4530438 Shewanella sp. W3-18-1 4659271 YP_965305.1 CDS Sputw3181_3947 NC_008750.1 4530515 4533106 R PFAM: PKD domain containing protein; peptidase M6, immune inhibitor A; KEGG: shm:Shewmr7_0119 peptidase M6, immune inhibitor A; peptidase M6, immune inhibitor A complement(4530515..4533106) Shewanella sp. W3-18-1 4659057 YP_965306.1 CDS Sputw3181_3948 NC_008750.1 4533412 4534005 R PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO0129 conserved hypothetical protein TIGR00427; multiple antibiotic resistance (MarC)-like protein complement(4533412..4534005) Shewanella sp. W3-18-1 4659056 YP_965307.1 CDS Sputw3181_3949 NC_008750.1 4534412 4536025 D KEGG: shm:Shewmr7_0117 hypothetical protein; hypothetical protein 4534412..4536025 Shewanella sp. W3-18-1 4661821 YP_965308.1 CDS Sputw3181_3950 NC_008750.1 4536088 4536870 D PFAM: protein of unknown function DUF833; KEGG: shm:Shewmr7_0116 protein of unknown function DUF833; hypothetical protein 4536088..4536870 Shewanella sp. W3-18-1 4661603 YP_965309.1 CDS Sputw3181_3951 NC_008750.1 4536879 4537331 R KEGG: shm:Shewmr7_0115 hypothetical protein; hypothetical protein complement(4536879..4537331) Shewanella sp. W3-18-1 4659172 YP_965310.1 CDS Sputw3181_3952 NC_008750.1 4537452 4538015 D PFAM: phospholipid/glycerol acyltransferase; KEGG: shm:Shewmr7_0114 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 4537452..4538015 Shewanella sp. W3-18-1 4658603 YP_965311.1 CDS Sputw3181_3953 NC_008750.1 4538036 4538659 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_0113 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 4538036..4538659 Shewanella sp. W3-18-1 4658572 YP_965312.1 CDS Sputw3181_3954 NC_008750.1 4538656 4539924 R PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_0112 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(4538656..4539924) Shewanella sp. W3-18-1 4658727 YP_965313.1 CDS Sputw3181_3955 NC_008750.1 4540073 4540465 R PFAM: protein of unknown function DUF1090; KEGG: son:SO0119 hypothetical protein; hypothetical protein complement(4540073..4540465) Shewanella sp. W3-18-1 4661205 YP_965314.1 CDS Sputw3181_3956 NC_008750.1 4540510 4541034 R PFAM: Redoxin domain protein; KEGG: ppr:PBPRB1492 hypothetical thioredoxin; redoxin domain-containing protein complement(4540510..4541034) Shewanella sp. W3-18-1 4658683 YP_965315.1 CDS Sputw3181_3957 NC_008750.1 4541060 4541944 R PFAM: DSBA oxidoreductase; KEGG: vfi:VF2492 copper sensitivity protein ScsC; DSBA oxidoreductase complement(4541060..4541944) Shewanella sp. W3-18-1 4658679 YP_965316.1 CDS Sputw3181_3958 NC_008750.1 4542066 4544177 R KEGG: vpa:VP2006 putative suppressor for copper-sensitivity B precursor; putative suppressor for copper-sensitivity B complement(4542066..4544177) Shewanella sp. W3-18-1 4661147 YP_965317.1 CDS Sputw3181_3959 NC_008750.1 4544328 4544741 R hypothetical protein complement(4544328..4544741) Shewanella sp. W3-18-1 4657739 YP_965318.1 CDS Sputw3181_3960 NC_008750.1 4545013 4545687 D KEGG: shm:Shewmr7_0110 hypothetical protein; hypothetical protein 4545013..4545687 Shewanella sp. W3-18-1 4657729 YP_965319.1 CDS Sputw3181_3961 NC_008750.1 4545684 4546115 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppr:PBPRA1918 putative glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(4545684..4546115) Shewanella sp. W3-18-1 4657727 YP_965320.1 CDS Sputw3181_3962 NC_008750.1 4546134 4546772 R KEGG: shm:Shewmr7_0108 hypothetical protein; hypothetical protein complement(4546134..4546772) Shewanella sp. W3-18-1 4658131 YP_965321.1 CDS Sputw3181_3963 NC_008750.1 4547109 4548431 D PFAM: peptidase M48, Ste24p; KEGG: son:SO0110 hypothetical protease; peptidase M48, Ste24p 4547109..4548431 Shewanella sp. W3-18-1 4661351 YP_965322.1 CDS Sputw3181_3964 NC_008750.1 4548696 4548986 R hypothetical protein complement(4548696..4548986) Shewanella sp. W3-18-1 4657772 YP_965323.1 CDS Sputw3181_3965 NC_008750.1 4549115 4549540 R KEGG: pol:Bpro_1650 hypothetical protein; hypothetical protein complement(4549115..4549540) Shewanella sp. W3-18-1 4661244 YP_965324.1 CDS Sputw3181_3966 NC_008750.1 4550680 4551459 R PFAM: protein of unknown function DUF548; KEGG: shm:Shewmr7_3921 protein of unknown function DUF548; hypothetical protein complement(4550680..4551459) Shewanella sp. W3-18-1 4657711 YP_965325.1 CDS Sputw3181_3967 NC_008750.1 4551680 4553944 D PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pat:Patl_2246 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 4551680..4553944 Shewanella sp. W3-18-1 4661469 YP_965326.1 CDS Sputw3181_3968 NC_008750.1 4554081 4554926 D PFAM: protein of unknown function DUF519; KEGG: shm:Shewmr7_3922 protein of unknown function DUF519; hypothetical protein 4554081..4554926 Shewanella sp. W3-18-1 4658054 YP_965327.1 CDS Sputw3181_3969 NC_008750.1 4555251 4556000 R PFAM: Lytic transglycosylase, catalytic; KEGG: son:SO4660 transglycosylase SLT domain protein; lytic transglycosylase, catalytic complement(4555251..4556000) Shewanella sp. W3-18-1 4658041 YP_965328.1 CDS Sputw3181_3970 NC_008750.1 4556107 4556670 R PFAM: LemA family protein; KEGG: son:SO4662 lemA protein; LemA family protein complement(4556107..4556670) Shewanella sp. W3-18-1 4657701 YP_965329.1 CDS Sputw3181_3971 NC_008750.1 4557234 4558769 D PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; KEGG: she:Shewmr4_3833 AbgT putative transporter; transporter AbgT 4557234..4558769 Shewanella sp. W3-18-1 4657966 YP_965330.1 CDS Sputw3181_3972 NC_008750.1 4558850 4559170 R KEGG: shm:Shewmr7_3927 hypothetical protein; hypothetical protein complement(4558850..4559170) Shewanella sp. W3-18-1 4657960 YP_965331.1 CDS Sputw3181_3973 NC_008750.1 4559203 4559490 R KEGG: she:Shewmr4_3835 hypothetical protein; hypothetical protein complement(4559203..4559490) Shewanella sp. W3-18-1 4657952 YP_965332.1 CDS Sputw3181_3974 NC_008750.1 4559619 4562753 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3929 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(4559619..4562753) Shewanella sp. W3-18-1 4657935 YP_965333.1 CDS Sputw3181_3975 NC_008750.1 4562763 4563908 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_3837 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(4562763..4563908) Shewanella sp. W3-18-1 4657784 YP_965334.1 CDS Sputw3181_3976 NC_008750.1 4564679 4565326 D PFAM: Glutathione S-transferase, N-terminal domain; KEGG: she:Shewmr4_3840 glutathione S-transferase, N-terminal domain protein; glutathione S-transferase domain-containing protein 4564679..4565326 Shewanella sp. W3-18-1 4657783 YP_965335.1 CDS Sputw3181_3977 NC_008750.1 4565352 4565882 R KEGG: shm:Shewmr7_3934 hypothetical protein; hypothetical protein complement(4565352..4565882) Shewanella sp. W3-18-1 4658362 YP_965336.1 CDS Sputw3181_3978 NC_008750.1 4566058 4568097 R PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO4699 oligopeptidase A; oligopeptidase A complement(4566058..4568097) Shewanella sp. W3-18-1 4658584 YP_965337.1 CDS Sputw3181_3979 NC_008750.1 4568407 4569195 D KEGG: son:SO4700 hypothetical protein; hypothetical protein 4568407..4569195 Shewanella sp. W3-18-1 4658395 YP_965338.1 CDS Sputw3181_3980 NC_008750.1 4569322 4569876 D KEGG: son:SO4701 hypothetical protein; hypothetical protein 4569322..4569876 Shewanella sp. W3-18-1 4657792 YP_965339.1 CDS Sputw3181_3981 NC_008750.1 4570007 4571365 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 4570007..4571365 Shewanella sp. W3-18-1 4657806 YP_965340.1 CDS Sputw3181_3982 NC_008750.1 4571747 4574791 D KEGG: ret:RHE_CH02008 hypothetical protein; hypothetical protein 4571747..4574791 Shewanella sp. W3-18-1 4657839 YP_965341.1 CDS Sputw3181_3983 NC_008750.1 4575355 4576164 D hypothetical protein 4575355..4576164 Shewanella sp. W3-18-1 4657844 YP_965342.1 CDS Sputw3181_3984 NC_008750.1 4576378 4577301 D PFAM: transposase, IS4 family protein; KEGG: shm:Shewmr7_3098 transposase, IS4 family protein; transposase, IS4 family protein 4576378..4577301 Shewanella sp. W3-18-1 4657869 YP_965343.1 CDS Sputw3181_3985 NC_008750.1 4577571 4578908 D PFAM: phage integrase family protein; KEGG: sdn:Sden_3590 transposase, putative; phage integrase family protein 4577571..4578908 Shewanella sp. W3-18-1 4657873 YP_965344.1 CDS Sputw3181_3986 NC_008750.1 4578901 4580643 D KEGG: sdn:Sden_3587 hypothetical protein; hypothetical protein 4578901..4580643 Shewanella sp. W3-18-1 4657909 YP_965345.1 CDS Sputw3181_3987 NC_008750.1 4580651 4582774 D KEGG: sdn:Sden_3586 hypothetical protein; hypothetical protein 4580651..4582774 Shewanella sp. W3-18-1 4657931 YP_965346.1 CDS Sputw3181_3988 NC_008750.1 4582771 4583211 D KEGG: sdn:Sden_3584 hypothetical protein; hypothetical protein 4582771..4583211 Shewanella sp. W3-18-1 4657997 YP_965347.1 CDS Sputw3181_3989 NC_008750.1 4583326 4583586 D KEGG: sdn:Sden_3583 hypothetical protein; hypothetical protein 4583326..4583586 Shewanella sp. W3-18-1 4658024 YP_965348.1 CDS Sputw3181_3990 NC_008750.1 4583778 4584212 R KEGG: vpa:VP1086 hypothetical protein; hypothetical protein complement(4583778..4584212) Shewanella sp. W3-18-1 4658070 YP_965349.1 CDS Sputw3181_3991 NC_008750.1 4584212 4585408 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: fra:Francci3_0885 UBA/ThiF-type NAD/FAD binding fold; hypothetical protein complement(4584212..4585408) Shewanella sp. W3-18-1 4658082 YP_965350.1 CDS Sputw3181_3992 NC_008750.1 4586084 4586626 R KEGG: rme:Rmet_3357 hypothetical protein; hypothetical protein complement(4586084..4586626) Shewanella sp. W3-18-1 4658133 YP_965351.1 CDS Sputw3181_3993 NC_008750.1 4586669 4587754 R KEGG: shm:Shewmr7_1788 ATP-binding region, ATPase-like protein; ATP-binding region, ATPase-like protein complement(4586669..4587754) Shewanella sp. W3-18-1 4658147 YP_965352.1 CDS Sputw3181_3994 NC_008750.1 4588762 4590258 D TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: shm:Shewmr7_3940 sodium/proline symporter; sodium/proline symporter 4588762..4590258 Shewanella sp. W3-18-1 4658152 YP_965353.1 CDS Sputw3181_3995 NC_008750.1 4590267 4591367 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 4590267..4591367 Shewanella sp. W3-18-1 4658167 YP_965354.1 CDS Sputw3181_3996 NC_008750.1 4591400 4592647 D TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: shm:Shewmr7_3942 gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 4591400..4592647 Shewanella sp. W3-18-1 4658186 YP_965355.1 CDS Sputw3181_3997 NC_008750.1 4592773 4594314 R catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase complement(4592773..4594314) Shewanella sp. W3-18-1 4658233 YP_965356.1 CDS Sputw3181_3998 NC_008750.1 4594367 4596034 R catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase complement(4594367..4596034) Shewanella sp. W3-18-1 4657745 YP_965357.1 CDS Sputw3181_3999 NC_008750.1 4596179 4596886 R TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: she:Shewmr4_0098 transcriptional regulator, histidine utilization repressor, GntR family; histidine utilization repressor complement(4596179..4596886) Shewanella sp. W3-18-1 4658239 YP_965358.1 CDS Sputw3181_4000 NC_008750.1 4597121 4598347 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 4597121..4598347 Shewanella sp. W3-18-1 4658291 YP_965359.1 CDS Sputw3181_4001 NC_008750.1 4598445 4599200 R PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: shm:Shewmr7_0091 FAD-binding 9, siderophore-interacting domain protein; siderophore-interacting protein complement(4598445..4599200) Shewanella sp. W3-18-1 4657767 YP_965360.1 CDS Sputw3181_4002 NC_008750.1 4599279 4599710 R PFAM: regulatory protein, MarR; KEGG: shm:Shewmr7_0090 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(4599279..4599710) Shewanella sp. W3-18-1 4658993 YP_965361.1 CDS Sputw3181_4003 NC_008750.1 4599877 4600233 R KEGG: shm:Shewmr7_0143 hypothetical protein; hypothetical protein complement(4599877..4600233) Shewanella sp. W3-18-1 4659047 YP_965362.1 CDS Sputw3181_4004 NC_008750.1 4600348 4600884 R KEGG: son:SO0090 hypothetical protein; hypothetical protein complement(4600348..4600884) Shewanella sp. W3-18-1 4658624 YP_965363.1 CDS Sputw3181_4005 NC_008750.1 4601107 4601451 R hypothetical protein complement(4601107..4601451) Shewanella sp. W3-18-1 4658647 YP_965364.1 CDS Sputw3181_4006 NC_008750.1 4601611 4603434 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: csa:Csal_2061 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 4601611..4603434 Shewanella sp. W3-18-1 4658677 YP_965365.1 CDS Sputw3181_4007 NC_008750.1 4603436 4603864 R KEGG: son:SO0085 hypothetical protein; hypothetical protein complement(4603436..4603864) Shewanella sp. W3-18-1 4658678 YP_965366.1 CDS Sputw3181_4008 NC_008750.1 4604245 4604925 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0084 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4604245..4604925 Shewanella sp. W3-18-1 4658409 YP_965367.1 CDS Sputw3181_4009 NC_008750.1 4605010 4606134 R KEGG: sdn:Sden_0075 hypothetical protein; hypothetical protein complement(4605010..4606134) Shewanella sp. W3-18-1 4658525 YP_965368.1 CDS Sputw3181_4010 NC_008750.1 4606470 4606865 R PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: shm:Shewmr7_0084 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein complement(4606470..4606865) Shewanella sp. W3-18-1 4658559 YP_965369.1 CDS Sputw3181_4011 NC_008750.1 4606987 4607427 D PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_0081 thioesterase superfamily protein; thioesterase superfamily protein 4606987..4607427 Shewanella sp. W3-18-1 4658739 YP_965370.1 CDS Sputw3181_4012 NC_008750.1 4607497 4607760 D KEGG: she:Shewmr4_0083 hypothetical protein; hypothetical protein 4607497..4607760 Shewanella sp. W3-18-1 4658746 YP_965371.1 CDS Sputw3181_4015 NC_008750.1 4612821 4613237 R PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_0078 thioesterase superfamily protein; thioesterase superfamily protein complement(4612821..4613237) Shewanella sp. W3-18-1 4658850 YP_965372.1 CDS Sputw3181_4016 NC_008750.1 4613364 4615820 R KEGG: she:Shewmr4_0079 MORN variant repeat protein; MORN repeat-containing protein complement(4613364..4615820) Shewanella sp. W3-18-1 4658776 YP_965373.1 CDS Sputw3181_4017 NC_008750.1 4615964 4617760 R PFAM: AMP-dependent synthetase and ligase; KEGG: she:Shewmr4_0078 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(4615964..4617760) Shewanella sp. W3-18-1 4658787 YP_965374.1 CDS Sputw3181_4018 NC_008750.1 4617953 4619269 R KEGG: son:SO0074 hypothetical protein; hypothetical protein complement(4617953..4619269) Shewanella sp. W3-18-1 4657979 YP_965375.1 CDS Sputw3181_4019 NC_008750.1 4619266 4620129 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0073 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(4619266..4620129) Shewanella sp. W3-18-1 4658853 YP_965376.1 CDS Sputw3181_4020 NC_008750.1 4620172 4620543 R PFAM: regulatory protein GntR, HTH; KEGG: son:SO0072 transcriptional regulator, GntR family; regulatory protein GntR complement(4620172..4620543) Shewanella sp. W3-18-1 4659793 YP_965377.1 CDS Sputw3181_4021 NC_008750.1 4620637 4622277 D PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: she:Shewmr4_0074 TAP domain protein; TAP domain-containing protein 4620637..4622277 Shewanella sp. W3-18-1 4659166 YP_965378.1 CDS Sputw3181_4022 NC_008750.1 4622281 4623015 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0070 ATP-binding transport protein NatA; ABC transporter-like protein 4622281..4623015 Shewanella sp. W3-18-1 4659021 YP_965379.1 CDS Sputw3181_4023 NC_008750.1 4623098 4624237 D KEGG: son:SO0069 transport protein, putative; transporter 4623098..4624237 Shewanella sp. W3-18-1 4659064 YP_965380.1 CDS Sputw3181_4024 NC_008750.1 4624317 4624565 D KEGG: son:SO0068 hypothetical protein; hypothetical protein 4624317..4624565 Shewanella sp. W3-18-1 4659284 YP_965381.1 CDS mogA NC_008750.1 4624638 4625171 R forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA complement(4624638..4625171) Shewanella sp. W3-18-1 4659303 YP_965382.1 CDS Sputw3181_4026 NC_008750.1 4625462 4625926 R PFAM: NLP/P60 protein; KEGG: shm:Shewmr7_0059 NLP/P60 protein; NLP/P60 protein complement(4625462..4625926) Shewanella sp. W3-18-1 4659335 YP_965383.1 CDS Sputw3181_4027 NC_008750.1 4626113 4627195 R KEGG: eca:ECA0549 putative plasmid transfer protein; putative plasmid transfer protein complement(4626113..4627195) Shewanella sp. W3-18-1 4659359 YP_965384.1 CDS Sputw3181_4028 NC_008750.1 4627592 4628515 D PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: shm:Shewmr7_0053 pirin domain protein domain protein; pirin domain-containing protein 4627592..4628515 Shewanella sp. W3-18-1 4659391 YP_965385.1 CDS Sputw3181_4029 NC_008750.1 4628753 4629799 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_0052 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4628753..4629799 Shewanella sp. W3-18-1 4659393 YP_965386.1 CDS Sputw3181_4030 NC_008750.1 4629800 4630489 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO0059 transcriptional regulatory protein KdpE; two component transcriptional regulator 4629800..4630489 Shewanella sp. W3-18-1 4659409 YP_965387.1 CDS Sputw3181_4031 NC_008750.1 4630532 4631230 D PFAM: TrkA-N domain protein; KEGG: shm:Shewmr7_0050 TrkA-N domain protein; TrkA domain-containing protein 4630532..4631230 Shewanella sp. W3-18-1 4659416 YP_965388.1 CDS Sputw3181_4032 NC_008750.1 4631232 4632596 D TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: shm:Shewmr7_0049 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 4631232..4632596 Shewanella sp. W3-18-1 4659571 YP_965389.1 CDS Sputw3181_4033 NC_008750.1 4632897 4633361 D KEGG: sde:Sde_2764 hypothetical protein; hypothetical protein 4632897..4633361 Shewanella sp. W3-18-1 4659889 YP_965390.1 CDS Sputw3181_4034 NC_008750.1 4633435 4634811 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_0049 HI0933 family protein; hypothetical protein complement(4633435..4634811) Shewanella sp. W3-18-1 4659089 YP_965391.1 CDS gpsA NC_008750.1 4634924 4635940 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(4634924..4635940) Shewanella sp. W3-18-1 4659626 YP_965392.1 CDS Sputw3181_4036 NC_008750.1 4635945 4636430 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(4635945..4636430) Shewanella sp. W3-18-1 4659924 YP_965393.1 CDS Sputw3181_4037 NC_008750.1 4636689 4637123 R PFAM: Rhodanese domain protein; KEGG: shm:Shewmr7_0044 rhodanese domain protein; rhodanese domain-containing protein complement(4636689..4637123) Shewanella sp. W3-18-1 4659951 YP_965394.1 CDS Sputw3181_4038 NC_008750.1 4637390 4638934 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 4637390..4638934 Shewanella sp. W3-18-1 4659952 YP_965395.1 CDS Sputw3181_4039 NC_008750.1 4638945 4640078 D PFAM: peptidase M23B; KEGG: shm:Shewmr7_0042 peptidase M23B; peptidase M23B 4638945..4640078 Shewanella sp. W3-18-1 4660047 YP_965396.1 CDS Sputw3181_4040 NC_008750.1 4640108 4641316 D KEGG: she:Shewmr4_0043 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 4640108..4641316 Shewanella sp. W3-18-1 4660054 YP_965397.1 CDS Sputw3181_4041 NC_008750.1 4641326 4642069 D PFAM: protein of unknown function DUF610, YibQ; KEGG: shm:Shewmr7_0040 protein of unknown function DUF610, YibQ; hypothetical protein 4641326..4642069 Shewanella sp. W3-18-1 4660057 YP_965398.1 CDS Sputw3181_4042 NC_008750.1 4642055 4642510 R TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: she:Shewmr4_0041 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(4642055..4642510) Shewanella sp. W3-18-1 4660079 YP_965399.1 CDS Sputw3181_4043 NC_008750.1 4642533 4642787 R PFAM: protein of unknown function UPF0153; KEGG: son:SO0044 hypothetical protein; hypothetical protein complement(4642533..4642787) Shewanella sp. W3-18-1 4660118 YP_965400.1 CDS Sputw3181_4044 NC_008750.1 4648831 4650258 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4737 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin complement(4648831..4650258) Shewanella sp. W3-18-1 4658022 YP_965401.1 CDS Sputw3181_4045 NC_008750.1 4650350 4650700 D KEGG: she:Shewmr4_3917 hypothetical protein; hypothetical protein 4650350..4650700 Shewanella sp. W3-18-1 4660436 YP_965402.1 CDS Sputw3181_4046 NC_008750.1 4650819 4651721 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 4650819..4651721 Shewanella sp. W3-18-1 4660459 YP_965403.1 CDS Sputw3181_4047 NC_008750.1 4651905 4652108 D KEGG: she:Shewmr4_3919 hypothetical protein; hypothetical protein 4651905..4652108 Shewanella sp. W3-18-1 4660472 YP_965404.1 CDS Sputw3181_4048 NC_008750.1 4652217 4654046 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(4652217..4654046) Shewanella sp. W3-18-1 4660316 YP_965405.1 CDS Sputw3181_4049 NC_008750.1 4654091 4654861 R PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: son:SO4742 transcriptional regulator, DeoR family; DeoR family transcriptional regulator complement(4654091..4654861) Shewanella sp. W3-18-1 4660487 YP_965406.1 CDS Sputw3181_4050 NC_008750.1 4655062 4657167 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4743 TonB-dependent receptor, putative; TonB-dependent siderophore receptor complement(4655062..4657167) Shewanella sp. W3-18-1 4660319 YP_965407.1 CDS Sputw3181_4051 NC_008750.1 4657444 4658808 R KEGG: she:Shewmr4_3923 UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; UDP-N-acetylglucosamine pyrophosphorylase complement(4657444..4658808) Shewanella sp. W3-18-1 4660528 YP_965408.1 CDS atpC NC_008750.1 4659006 4659434 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(4659006..4659434) Shewanella sp. W3-18-1 4660531 YP_965409.1 CDS Sputw3181_4053 NC_008750.1 4659469 4660860 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(4659469..4660860) Shewanella sp. W3-18-1 4660584 YP_965410.1 CDS Sputw3181_4054 NC_008750.1 4660896 4661756 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(4660896..4661756) Shewanella sp. W3-18-1 4660608 YP_965411.1 CDS Sputw3181_4055 NC_008750.1 4661807 4663348 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(4661807..4663348) Shewanella sp. W3-18-1 4660624 YP_965412.1 CDS Sputw3181_4056 NC_008750.1 4663363 4663896 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(4663363..4663896) Shewanella sp. W3-18-1 4660644 YP_965413.1 CDS Sputw3181_4057 NC_008750.1 4663912 4664382 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(4663912..4664382) Shewanella sp. W3-18-1 4660708 YP_965414.1 CDS Sputw3181_4058 NC_008750.1 4664410 4664664 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(4664410..4664664) Shewanella sp. W3-18-1 4660769 YP_965415.1 CDS Sputw3181_4059 NC_008750.1 4664700 4665521 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(4664700..4665521) Shewanella sp. W3-18-1 4660814 YP_965416.1 CDS Sputw3181_4060 NC_008750.1 4665534 4665989 R PFAM: ATP synthase I chain; KEGG: shm:Shewmr7_4024 ATP synthase I chain; ATP synthase I chain complement(4665534..4665989) Shewanella sp. W3-18-1 4660826 YP_965417.1 CDS Sputw3181_4061 NC_008750.1 4666143 4667021 R TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: shm:Shewmr7_4025 ParB-like partition proteins; parB-like partition protein complement(4666143..4667021) Shewanella sp. W3-18-1 4660849 YP_965418.1 CDS Sputw3181_4062 NC_008750.1 4667031 4667819 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: shm:Shewmr7_4026 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(4667031..4667819) Shewanella sp. W3-18-1 4660952 YP_965419.1 CDS gidB NC_008750.1 4667894 4668514 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(4667894..4668514) Shewanella sp. W3-18-1 4660890 YP_965420.1 CDS Sputw3181_4064 NC_008750.1 4668632 4670521 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(4668632..4670521) Shewanella sp. W3-18-1 4660948 YP_965421.1 CDS Sputw3181_4065 NC_008750.1 4670961 4671422 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(4670961..4671422) Shewanella sp. W3-18-1 4661625 YP_965422.1 CDS Sputw3181_4066 NC_008750.1 4671582 4673135 D PFAM: TGF-beta receptor, type I/II extracellular region; KEGG: she:Shewmr4_3938 TGF-beta receptor, type I/II extracellular region; TGF-beta receptor, type I/II extracellular region 4671582..4673135 Shewanella sp. W3-18-1 4661195 YP_965423.1 CDS Sputw3181_4067 NC_008750.1 4673290 4676421 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rso:RSp0312 probable multidrug efflux system transmembrane protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(4673290..4676421) Shewanella sp. W3-18-1 4661129 YP_965424.1 CDS Sputw3181_4068 NC_008750.1 4676438 4677595 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSp0313 probable multidrug efflux system protein; RND family efflux transporter MFP subunit complement(4676438..4677595) Shewanella sp. W3-18-1 4661116 YP_965425.1 CDS Sputw3181_4069 NC_008750.1 4677761 4678489 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RS05454 probable two component response regulator transcription regulator protein; two component transcriptional regulator 4677761..4678489 Shewanella sp. W3-18-1 4661111 YP_965426.1 CDS Sputw3181_4070 NC_008750.1 4678486 4679580 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rru:Rru_A2930 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4678486..4679580 Shewanella sp. W3-18-1 4661107 YP_965427.1 CDS Sputw3181_4071 NC_008750.1 4679924 4680145 D KEGG: sdn:Sden_3021 integrase, catalytic region; hypothetical protein 4679924..4680145 Shewanella sp. W3-18-1 4661074 YP_965428.1 CDS Sputw3181_4072 NC_008750.1 4680660 4681289 R hypothetical protein complement(4680660..4681289) Shewanella sp. W3-18-1 4661867 YP_965429.1 CDS Sputw3181_4073 NC_008750.1 4681496 4682083 D PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: rha:RHA1_ro03159 resolvase; resolvase domain-containing protein 4681496..4682083 Shewanella sp. W3-18-1 4661792 YP_965430.1 CDS Sputw3181_4074 NC_008750.1 4682080 4683909 D PFAM: Eco57I restriction endonuclease; KEGG: ssn:SSO_1583 putative methylase; Eco57I restriction endonuclease 4682080..4683909 Shewanella sp. W3-18-1 4661786 YP_965431.1 CDS Sputw3181_4075 NC_008750.1 4683899 4684945 D PFAM: BsuBIPstI restriction endonuclease domain protein; KEGG: ssn:SSO_1584 putative restriction endonuclease; BsuBIPstI restriction endonuclease domain-containing protein 4683899..4684945 Shewanella sp. W3-18-1 4661781 YP_965432.1 CDS Sputw3181_4076 NC_008750.1 4685009 4685653 R KEGG: plu:plu0130 hypothetical protein; hypothetical protein complement(4685009..4685653) Shewanella sp. W3-18-1 4661767 YP_965433.1 CDS Sputw3181_4077 NC_008750.1 4686063 4686524 R hypothetical protein complement(4686063..4686524) Shewanella sp. W3-18-1 4661741 YP_965434.1 CDS Sputw3181_4078 NC_008750.1 4686617 4687582 D PFAM: phage integrase family protein; KEGG: tcx:Tcr_0833 hypothetical protein; phage integrase family protein 4686617..4687582 Shewanella sp. W3-18-1 4661735 YP_965435.1 CDS Sputw3181_4079 NC_008750.1 4688826 4689095 D hypothetical protein 4688826..4689095 Shewanella sp. W3-18-1 4661713 YP_965436.1 CDS Sputw3181_4080 NC_008750.1 4689510 4689905 R KEGG: ana:alr8557 hypothetical protein; hypothetical protein complement(4689510..4689905) Shewanella sp. W3-18-1 4661688 YP_965437.1 CDS Sputw3181_4081 NC_008750.1 4689902 4690759 R hypothetical protein complement(4689902..4690759) Shewanella sp. W3-18-1 4661669 YP_965438.1 CDS Sputw3181_4082 NC_008750.1 4690987 4692411 D PFAM: TraH family protein; KEGG: eci:UTI89_P132 putative ATP-binding F pilus assembly protein; TraH family protein 4690987..4692411 Shewanella sp. W3-18-1 4661626 YP_965439.1 CDS Sputw3181_4083 NC_008750.1 4692415 4695819 D PFAM: TraG domain protein; KEGG: eba:p1B148 sex pilus assembly; TraG domain-containing protein 4692415..4695819 Shewanella sp. W3-18-1 4661604 YP_965440.1 CDS Sputw3181_4084 NC_008750.1 4696779 4697390 D hypothetical protein 4696779..4697390 Shewanella sp. W3-18-1 4661590 YP_965441.1 CDS Sputw3181_4085 NC_008750.1 4697393 4697926 D hypothetical protein 4697393..4697926 Shewanella sp. W3-18-1 4661565 YP_965442.1 CDS Sputw3181_4086 NC_008750.1 4698023 4700782 D TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN 4698023..4700782 Shewanella sp. W3-18-1 4661527 YP_965443.1 CDS Sputw3181_4087 NC_008750.1 4700932 4701168 D hypothetical protein 4700932..4701168 Shewanella sp. W3-18-1 4661108 YP_965444.1 CDS Sputw3181_4088 NC_008750.1 4701155 4702114 D PFAM: plasmid encoded RepA protein; KEGG: xac:XACb0056 replication protein A; plasmid encoded RepA protein 4701155..4702114 Shewanella sp. W3-18-1 4661444 YP_965445.1 CDS Sputw3181_4089 NC_008750.1 4702472 4702840 D TIGRFAM: DNA binding domain, excisionase family; putative transcriptional regulator 4702472..4702840 Shewanella sp. W3-18-1 4661397 YP_965446.1 CDS Sputw3181_4090 NC_008750.1 4702837 4704054 R PFAM: phage integrase family protein; KEGG: pgi:PG0874 mobilizable transposon, int protein; phage integrase family protein complement(4702837..4704054) Shewanella sp. W3-18-1 4661413 YP_965447.1 CDS trmE NC_008750.1 4704258 4705619 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(4704258..4705619) Shewanella sp. W3-18-1 4661408 YP_965448.1 CDS Sputw3181_4092 NC_008750.1 4705727 4707352 R PFAM: 60 kDa inner membrane insertion protein; KEGG: shm:Shewmr7_4032 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein complement(4705727..4707352) Shewanella sp. W3-18-1 4661360 YP_965449.1 CDS Sputw3181_4093 NC_008750.1 4707356 4707610 R PFAM: protein of unknown function DUF37; KEGG: son:SO0005 conserved hypothetical protein TIGR00278; hypothetical protein complement(4707356..4707610) Shewanella sp. W3-18-1 4661350 YP_965450.1 CDS rnpA NC_008750.1 4707577 4707933 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(4707577..4707933) Shewanella sp. W3-18-1 4661348 YP_965451.1 CDS rpmH NC_008750.1 4707949 4708086 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(4707949..4708086) Shewanella sp. W3-18-1 4661327 Sputw3181_R0004 tRNA Sputw3181_R0004 NC_008750.1 171582 171657 D tRNA-Thr 171582..171657 Shewanella sp. W3-18-1 4659042 Sputw3181_R0005 tRNA Sputw3181_R0005 NC_008750.1 171665 171749 D tRNA-Tyr 171665..171749 Shewanella sp. W3-18-1 4661081 Sputw3181_R0006 tRNA Sputw3181_R0006 NC_008750.1 171786 171859 D tRNA-Gly 171786..171859 Shewanella sp. W3-18-1 4661214 Sputw3181_R0007 tRNA Sputw3181_R0007 NC_008750.1 171869 171944 D tRNA-Thr 171869..171944 Shewanella sp. W3-18-1 4660736 Sputw3181_R0011 tRNA Sputw3181_R0011 NC_008750.1 219128 219204 D tRNA-Asp 219128..219204 Shewanella sp. W3-18-1 4660290 Sputw3181_R0013 tRNA Sputw3181_R0013 NC_008750.1 435717 435793 D tRNA-Ile 435717..435793 Shewanella sp. W3-18-1 4659800 Sputw3181_R0014 tRNA Sputw3181_R0014 NC_008750.1 435931 436006 D tRNA-Ala 435931..436006 Shewanella sp. W3-18-1 4659796 Sputw3181_R0017 tRNA Sputw3181_R0017 NC_008750.1 720617 720692 D tRNA-Gly 720617..720692 Shewanella sp. W3-18-1 4661099 Sputw3181_R0018 tRNA Sputw3181_R0018 NC_008750.1 720814 720889 D tRNA-Gly 720814..720889 Shewanella sp. W3-18-1 4661089 Sputw3181_R0019 tRNA Sputw3181_R0019 NC_008750.1 720932 721007 D tRNA-Gly 720932..721007 Shewanella sp. W3-18-1 4659080 Sputw3181_R0020 tRNA Sputw3181_R0020 NC_008750.1 721014 721089 D tRNA-Gly 721014..721089 Shewanella sp. W3-18-1 4659233 Sputw3181_R0021 tRNA Sputw3181_R0021 NC_008750.1 1164216 1164292 D tRNA-Trp 1164216..1164292 Shewanella sp. W3-18-1 4659841 Sputw3181_R0022 tRNA Sputw3181_R0022 NC_008750.1 1197325 1197401 D tRNA-Met 1197325..1197401 Shewanella sp. W3-18-1 4660775 Sputw3181_R0023 tRNA Sputw3181_R0023 NC_008750.1 1197472 1197556 D tRNA-Leu 1197472..1197556 Shewanella sp. W3-18-1 4658607 Sputw3181_R0024 tRNA Sputw3181_R0024 NC_008750.1 1197605 1197679 D tRNA-Gln 1197605..1197679 Shewanella sp. W3-18-1 4658547 Sputw3181_R0025 tRNA Sputw3181_R0025 NC_008750.1 1197702 1197776 D tRNA-Gln 1197702..1197776 Shewanella sp. W3-18-1 4658576 Sputw3181_R0026 tRNA Sputw3181_R0026 NC_008750.1 1197779 1197855 D tRNA-Met 1197779..1197855 Shewanella sp. W3-18-1 4658545 Sputw3181_R0027 tRNA Sputw3181_R0027 NC_008750.1 1197938 1198022 D tRNA-Leu 1197938..1198022 Shewanella sp. W3-18-1 4658540 Sputw3181_R0028 tRNA Sputw3181_R0028 NC_008750.1 1198066 1198140 D tRNA-Gln 1198066..1198140 Shewanella sp. W3-18-1 4658537 Sputw3181_R0029 tRNA Sputw3181_R0029 NC_008750.1 1212941 1213027 D tRNA-Leu 1212941..1213027 Shewanella sp. W3-18-1 4661832 Sputw3181_R0030 tRNA Sputw3181_R0030 NC_008750.1 1213110 1213186 D tRNA-Met 1213110..1213186 Shewanella sp. W3-18-1 4657733 Sputw3181_R0032 tRNA Sputw3181_R0032 NC_008750.1 1445268 1445359 D tRNA-Ser 1445268..1445359 Shewanella sp. W3-18-1 4660470 Sputw3181_R0033 tRNA Sputw3181_R0033 NC_008750.1 1445382 1445458 D tRNA-Arg 1445382..1445458 Shewanella sp. W3-18-1 4657843 Sputw3181_R0034 tRNA Sputw3181_R0034 NC_008750.1 1445483 1445559 D tRNA-Arg 1445483..1445559 Shewanella sp. W3-18-1 4657787 Sputw3181_R0035 tRNA Sputw3181_R0035 NC_008750.1 1445647 1445723 D tRNA-Arg 1445647..1445723 Shewanella sp. W3-18-1 4661596 Sputw3181_R0036 tRNA Sputw3181_R0036 NC_008750.1 1445766 1445842 D tRNA-Arg 1445766..1445842 Shewanella sp. W3-18-1 4661719 Sputw3181_R0037 tRNA Sputw3181_R0037 NC_008750.1 1445887 1445963 D tRNA-Arg 1445887..1445963 Shewanella sp. W3-18-1 4657780 Sputw3181_R0038 tRNA Sputw3181_R0038 NC_008750.1 1445999 1446090 D tRNA-Ser 1445999..1446090 Shewanella sp. W3-18-1 4657799 Sputw3181_R0039 tRNA Sputw3181_R0039 NC_008750.1 1446188 1446264 D tRNA-Arg 1446188..1446264 Shewanella sp. W3-18-1 4657807 Sputw3181_R0040 tRNA Sputw3181_R0040 NC_008750.1 1491320 1491395 R tRNA-Thr complement(1491320..1491395) Shewanella sp. W3-18-1 4659327 Sputw3181_R0041 tRNA Sputw3181_R0041 NC_008750.1 1491440 1491515 R tRNA-Phe complement(1491440..1491515) Shewanella sp. W3-18-1 4657861 Sputw3181_R0042 tRNA Sputw3181_R0042 NC_008750.1 1492002 1492077 R tRNA-Thr complement(1492002..1492077) Shewanella sp. W3-18-1 4657919 Sputw3181_R0043 tRNA Sputw3181_R0043 NC_008750.1 1492122 1492197 R tRNA-Phe complement(1492122..1492197) Shewanella sp. W3-18-1 4658034 Sputw3181_R0044 tRNA Sputw3181_R0044 NC_008750.1 1586838 1586913 R tRNA-Arg complement(1586838..1586913) Shewanella sp. W3-18-1 4658954 Sputw3181_R0045 tRNA Sputw3181_R0045 NC_008750.1 1710347 1710422 R tRNA-Val complement(1710347..1710422) Shewanella sp. W3-18-1 4661572 Sputw3181_R0046 tRNA Sputw3181_R0046 NC_008750.1 1710451 1710526 R tRNA-Val complement(1710451..1710526) Shewanella sp. W3-18-1 4659018 Sputw3181_R0047 tRNA Sputw3181_R0047 NC_008750.1 1710572 1710647 R tRNA-Val complement(1710572..1710647) Shewanella sp. W3-18-1 4658629 Sputw3181_R0048 tRNA Sputw3181_R0048 NC_008750.1 1710685 1710760 R tRNA-Val complement(1710685..1710760) Shewanella sp. W3-18-1 4658416 Sputw3181_R0049 tRNA Sputw3181_R0049 NC_008750.1 1710805 1710880 R tRNA-Val complement(1710805..1710880) Shewanella sp. W3-18-1 4658714 Sputw3181_R0050 tRNA Sputw3181_R0050 NC_008750.1 1712809 1712884 D tRNA-Ala 1712809..1712884 Shewanella sp. W3-18-1 4659162 Sputw3181_R0051 tRNA Sputw3181_R0051 NC_008750.1 1712960 1713035 D tRNA-Glu 1712960..1713035 Shewanella sp. W3-18-1 4658836 Sputw3181_R0052 tRNA Sputw3181_R0052 NC_008750.1 1713150 1713225 D tRNA-Ala 1713150..1713225 Shewanella sp. W3-18-1 4658856 Sputw3181_R0053 tRNA Sputw3181_R0053 NC_008750.1 1713391 1713466 D tRNA-Glu 1713391..1713466 Shewanella sp. W3-18-1 4658894 Sputw3181_R0054 tRNA Sputw3181_R0054 NC_008750.1 1713599 1713674 D tRNA-Glu 1713599..1713674 Shewanella sp. W3-18-1 4659658 Sputw3181_R0055 tRNA Sputw3181_R0055 NC_008750.1 1713898 1713973 D tRNA-Glu 1713898..1713973 Shewanella sp. W3-18-1 4658979 Sputw3181_R0056 tRNA Sputw3181_R0056 NC_008750.1 1714197 1714272 D tRNA-Glu 1714197..1714272 Shewanella sp. W3-18-1 4659253 Sputw3181_R0057 tRNA Sputw3181_R0057 NC_008750.1 1714509 1714584 D tRNA-Glu 1714509..1714584 Shewanella sp. W3-18-1 4659304 Sputw3181_R0058 tRNA Sputw3181_R0058 NC_008750.1 1714716 1714791 D tRNA-Glu 1714716..1714791 Shewanella sp. W3-18-1 4659413 Sputw3181_R0060 tRNA Sputw3181_R0060 NC_008750.1 1901327 1901403 D tRNA-Ile 1901327..1901403 Shewanella sp. W3-18-1 4659570 Sputw3181_R0061 tRNA Sputw3181_R0061 NC_008750.1 1901541 1901616 D tRNA-Ala 1901541..1901616 Shewanella sp. W3-18-1 4659847 Sputw3181_R0064 tRNA Sputw3181_R0064 NC_008750.1 1974623 1974699 D tRNA-Pro 1974623..1974699 Shewanella sp. W3-18-1 4661136 Sputw3181_R0065 tRNA Sputw3181_R0065 NC_008750.1 2307150 2307226 R tRNA-Val complement(2307150..2307226) Shewanella sp. W3-18-1 4661170 Sputw3181_R0066 tRNA Sputw3181_R0066 NC_008750.1 2307279 2307355 R tRNA-Val complement(2307279..2307355) Shewanella sp. W3-18-1 4660214 Sputw3181_R0067 tRNA Sputw3181_R0067 NC_008750.1 2328430 2328520 D tRNA-Ser 2328430..2328520 Shewanella sp. W3-18-1 4661820 Sputw3181_R0068 tRNA Sputw3181_R0068 NC_008750.1 2437783 2437869 R tRNA-Leu complement(2437783..2437869) Shewanella sp. W3-18-1 4659831 Sputw3181_R0069 tRNA Sputw3181_R0069 NC_008750.1 2437920 2437993 R tRNA-Cys complement(2437920..2437993) Shewanella sp. W3-18-1 4660650 Sputw3181_R0070 tRNA Sputw3181_R0070 NC_008750.1 2438047 2438122 R tRNA-Gly complement(2438047..2438122) Shewanella sp. W3-18-1 4660761 Sputw3181_R0071 tRNA Sputw3181_R0071 NC_008750.1 2480765 2480849 D tRNA-Tyr 2480765..2480849 Shewanella sp. W3-18-1 4661494 Sputw3181_R0072 tRNA Sputw3181_R0072 NC_008750.1 2480905 2480989 D tRNA-Tyr 2480905..2480989 Shewanella sp. W3-18-1 4660902 Sputw3181_R0073 tRNA Sputw3181_R0073 NC_008750.1 2481092 2481176 D tRNA-Tyr 2481092..2481176 Shewanella sp. W3-18-1 4661078 Sputw3181_R0074 tRNA Sputw3181_R0074 NC_008750.1 2486507 2486582 D tRNA-Asn 2486507..2486582 Shewanella sp. W3-18-1 4658741 Sputw3181_R0075 tRNA Sputw3181_R0075 NC_008750.1 2486644 2486719 D tRNA-Asn 2486644..2486719 Shewanella sp. W3-18-1 4661692 Sputw3181_R0076 tRNA Sputw3181_R0076 NC_008750.1 2486763 2486838 D tRNA-Asn 2486763..2486838 Shewanella sp. W3-18-1 4661661 Sputw3181_R0077 tRNA Sputw3181_R0077 NC_008750.1 2486882 2486957 D tRNA-Asn 2486882..2486957 Shewanella sp. W3-18-1 4661514 Sputw3181_R0078 tRNA Sputw3181_R0078 NC_008750.1 2487004 2487079 D tRNA-Asn 2487004..2487079 Shewanella sp. W3-18-1 4661447 Sputw3181_R0079 tRNA Sputw3181_R0079 NC_008750.1 2555195 2555282 R tRNA-Ser complement(2555195..2555282) Shewanella sp. W3-18-1 4659083 Sputw3181_R0080 tRNA Sputw3181_R0080 NC_008750.1 2591196 2591272 R tRNA-Asp complement(2591196..2591272) Shewanella sp. W3-18-1 4659189 Sputw3181_R0081 tRNA Sputw3181_R0081 NC_008750.1 2591423 2591499 R tRNA-Asp complement(2591423..2591499) Shewanella sp. W3-18-1 4660725 Sputw3181_R0082 tRNA Sputw3181_R0082 NC_008750.1 2746674 2746760 R tRNA-Leu complement(2746674..2746760) Shewanella sp. W3-18-1 4659968 Sputw3181_R0083 tRNA Sputw3181_R0083 NC_008750.1 2746876 2746962 R tRNA-Leu complement(2746876..2746962) Shewanella sp. W3-18-1 4660681 Sputw3181_R0084 tRNA Sputw3181_R0084 NC_008750.1 2747013 2747086 R tRNA-Cys complement(2747013..2747086) Shewanella sp. W3-18-1 4660658 Sputw3181_R0085 tRNA Sputw3181_R0085 NC_008750.1 2747140 2747215 R tRNA-Gly complement(2747140..2747215) Shewanella sp. W3-18-1 4660630 Sputw3181_R0086 tRNA Sputw3181_R0086 NC_008750.1 2750989 2751079 R tRNA-Ser complement(2750989..2751079) Shewanella sp. W3-18-1 4661103 Sputw3181_R0087 tRNA Sputw3181_R0087 NC_008750.1 2751424 2751514 R tRNA-Ser complement(2751424..2751514) Shewanella sp. W3-18-1 4660558 Sputw3181_R0088 tRNA Sputw3181_R0088 NC_008750.1 2760958 2761034 D tRNA-Met 2760958..2761034 Shewanella sp. W3-18-1 4659329 Sputw3181_R0089 tRNA Sputw3181_R0089 NC_008750.1 2761076 2761152 D tRNA-Met 2761076..2761152 Shewanella sp. W3-18-1 4660331 Sputw3181_R0090 tRNA Sputw3181_R0090 NC_008750.1 2761392 2761468 D tRNA-Met 2761392..2761468 Shewanella sp. W3-18-1 4660484 Sputw3181_R0091 tRNA Sputw3181_R0091 NC_008750.1 2761610 2761686 D tRNA-Met 2761610..2761686 Shewanella sp. W3-18-1 4660453 Sputw3181_R0092 tRNA Sputw3181_R0092 NC_008750.1 2784890 2784965 R tRNA-Lys complement(2784890..2784965) Shewanella sp. W3-18-1 4658731 Sputw3181_R0093 tRNA Sputw3181_R0093 NC_008750.1 2785024 2785099 R tRNA-Lys complement(2785024..2785099) Shewanella sp. W3-18-1 4660036 Sputw3181_R0094 tRNA Sputw3181_R0094 NC_008750.1 2785156 2785231 R tRNA-Lys complement(2785156..2785231) Shewanella sp. W3-18-1 4660013 Sputw3181_R0095 tRNA Sputw3181_R0095 NC_008750.1 2785290 2785365 R tRNA-Lys complement(2785290..2785365) Shewanella sp. W3-18-1 4659989 Sputw3181_R0096 tRNA Sputw3181_R0096 NC_008750.1 2785404 2785479 R tRNA-Lys complement(2785404..2785479) Shewanella sp. W3-18-1 4659947 Sputw3181_R0097 tRNA Sputw3181_R0097 NC_008750.1 2785539 2785614 R tRNA-Lys complement(2785539..2785614) Shewanella sp. W3-18-1 4659918 Sputw3181_R0099 tRNA Sputw3181_R0099 NC_008750.1 2978067 2978142 R tRNA-His complement(2978067..2978142) Shewanella sp. W3-18-1 4658904 Sputw3181_R0100 tRNA Sputw3181_R0100 NC_008750.1 2978152 2978228 R tRNA-Arg complement(2978152..2978228) Shewanella sp. W3-18-1 4659426 Sputw3181_R0101 tRNA Sputw3181_R0101 NC_008750.1 2978338 2978414 R tRNA-Pro complement(2978338..2978414) Shewanella sp. W3-18-1 4659404 Sputw3181_R0103 tRNA Sputw3181_R0103 NC_008750.1 3490170 3490246 D tRNA-Met 3490170..3490246 Shewanella sp. W3-18-1 4658577 Sputw3181_R0107 tRNA Sputw3181_R0107 NC_008750.1 3598840 3598915 D tRNA-Phe 3598840..3598915 Shewanella sp. W3-18-1 4658832 Sputw3181_R0108 tRNA Sputw3181_R0108 NC_008750.1 3598970 3599056 D tRNA-Leu 3598970..3599056 Shewanella sp. W3-18-1 4659220 Sputw3181_R0109 tRNA Sputw3181_R0109 NC_008750.1 3599125 3599211 D tRNA-Leu 3599125..3599211 Shewanella sp. W3-18-1 4659207 Sputw3181_R0111 tRNA Sputw3181_R0111 NC_008750.1 3879529 3879615 D tRNA-Leu 3879529..3879615 Shewanella sp. W3-18-1 4658472 Sputw3181_R0113 tRNA Sputw3181_R0113 NC_008750.1 4195044 4195119 R tRNA-Thr complement(4195044..4195119) Shewanella sp. W3-18-1 4658812 Sputw3181_R0116 tRNA Sputw3181_R0116 NC_008750.1 4198865 4198940 R tRNA-Ala complement(4198865..4198940) Shewanella sp. W3-18-1 4658737 Sputw3181_R0117 tRNA Sputw3181_R0117 NC_008750.1 4199078 4199154 R tRNA-Ile complement(4199078..4199154) Shewanella sp. W3-18-1 4658560 Sputw3181_R0119 tRNA Sputw3181_R0119 NC_008750.1 4276230 4276306 R tRNA-Pro complement(4276230..4276306) Shewanella sp. W3-18-1 4657757 Sputw3181_R0120 tRNA Sputw3181_R0120 NC_008750.1 4276459 4276535 R tRNA-Pro complement(4276459..4276535) Shewanella sp. W3-18-1 4658680 Sputw3181_R0121 tRNA Sputw3181_R0121 NC_008750.1 4276752 4276827 R tRNA-His complement(4276752..4276827) Shewanella sp. W3-18-1 4658669 Sputw3181_R0122 tRNA Sputw3181_R0122 NC_008750.1 4276880 4276956 R tRNA-Arg complement(4276880..4276956) Shewanella sp. W3-18-1 4658663 Sputw3181_R0127 tRNA Sputw3181_R0127 NC_008750.1 4643017 4643093 R tRNA-Asp complement(4643017..4643093) Shewanella sp. W3-18-1 4660125 Sputw3181_R0001 rRNA Sputw3181_R0001 NC_008750.1 38735 40269 D 16S ribosomal RNA 38735..40269 Shewanella sp. W3-18-1 4659249 Sputw3181_R0002 rRNA Sputw3181_R0002 NC_008750.1 40645 43537 D 23S ribosomal RNA 40645..43537 Shewanella sp. W3-18-1 4661313 Sputw3181_R0003 rRNA Sputw3181_R0003 NC_008750.1 43712 43827 D 5S ribosomal RNA 43712..43827 Shewanella sp. W3-18-1 4661292 Sputw3181_R0008 rRNA Sputw3181_R0008 NC_008750.1 213887 215421 D 16S ribosomal RNA 213887..215421 Shewanella sp. W3-18-1 4657992 Sputw3181_R0009 rRNA Sputw3181_R0009 NC_008750.1 215901 218793 D 23S ribosomal RNA 215901..218793 Shewanella sp. W3-18-1 4660519 Sputw3181_R0010 rRNA Sputw3181_R0010 NC_008750.1 218976 219091 D 5S ribosomal RNA 218976..219091 Shewanella sp. W3-18-1 4660322 Sputw3181_R0012 rRNA Sputw3181_R0012 NC_008750.1 433939 435473 D 16S ribosomal RNA 433939..435473 Shewanella sp. W3-18-1 4659956 Sputw3181_R0015 rRNA Sputw3181_R0015 NC_008750.1 436447 439339 D 23S ribosomal RNA 436447..439339 Shewanella sp. W3-18-1 4659717 Sputw3181_R0016 rRNA Sputw3181_R0016 NC_008750.1 439570 439685 D 5S ribosomal RNA 439570..439685 Shewanella sp. W3-18-1 4659357 Sputw3181_R0059 rRNA Sputw3181_R0059 NC_008750.1 1899549 1901083 D 16S ribosomal RNA 1899549..1901083 Shewanella sp. W3-18-1 4661766 Sputw3181_R0062 rRNA Sputw3181_R0062 NC_008750.1 1902060 1904952 D 23S ribosomal RNA 1902060..1904952 Shewanella sp. W3-18-1 4659623 Sputw3181_R0063 rRNA Sputw3181_R0063 NC_008750.1 1905197 1905312 D 5S ribosomal RNA 1905197..1905312 Shewanella sp. W3-18-1 4659921 Sputw3181_R0104 rRNA Sputw3181_R0104 NC_008750.1 3585958 3586073 R 5S ribosomal RNA complement(3585958..3586073) Shewanella sp. W3-18-1 4658681 Sputw3181_R0105 rRNA Sputw3181_R0105 NC_008750.1 3586254 3589146 R 23S ribosomal RNA complement(3586254..3589146) Shewanella sp. W3-18-1 4659305 Sputw3181_R0106 rRNA Sputw3181_R0106 NC_008750.1 3589475 3591009 R 16S ribosomal RNA complement(3589475..3591009) Shewanella sp. W3-18-1 4660983 Sputw3181_R0112 rRNA Sputw3181_R0112 NC_008750.1 4194891 4195006 R 5S ribosomal RNA complement(4194891..4195006) Shewanella sp. W3-18-1 4659791 Sputw3181_R0114 rRNA Sputw3181_R0114 NC_008750.1 4195193 4195308 R 5S ribosomal RNA complement(4195193..4195308) Shewanella sp. W3-18-1 4658786 Sputw3181_R0115 rRNA Sputw3181_R0115 NC_008750.1 4195532 4198424 R 23S ribosomal RNA complement(4195532..4198424) Shewanella sp. W3-18-1 4658763 Sputw3181_R0118 rRNA Sputw3181_R0118 NC_008750.1 4199398 4200932 R 16S ribosomal RNA complement(4199398..4200932) Shewanella sp. W3-18-1 4658735 Sputw3181_R0124 rRNA Sputw3181_R0124 NC_008750.1 4424069 4424184 R 5S ribosomal RNA complement(4424069..4424184) Shewanella sp. W3-18-1 4661426 Sputw3181_R0125 rRNA Sputw3181_R0125 NC_008750.1 4424365 4427257 R 23S ribosomal RNA complement(4424365..4427257) Shewanella sp. W3-18-1 4658142 Sputw3181_R0126 rRNA Sputw3181_R0126 NC_008750.1 4427586 4429120 R 16S ribosomal RNA complement(4427586..4429120) Shewanella sp. W3-18-1 4658125 Sputw3181_R0128 rRNA Sputw3181_R0128 NC_008750.1 4643130 4643245 R 5S ribosomal RNA complement(4643130..4643245) Shewanella sp. W3-18-1 4658092 Sputw3181_R0129 rRNA Sputw3181_R0129 NC_008750.1 4643420 4646312 R 23S ribosomal RNA complement(4643420..4646312) Shewanella sp. W3-18-1 4658063 Sputw3181_R0130 rRNA Sputw3181_R0130 NC_008750.1 4646688 4648222 R 16S ribosomal RNA complement(4646688..4648222) Shewanella sp. W3-18-1 4658051