-- dump date   	20140620_063548
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_002355968.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_002355969.1	KEGG: shw:Sputw3181_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain
YP_002355970.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_002355971.1	KEGG: shw:Sputw3181_0004 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II
YP_002355972.1	PFAM: Glutathione S-transferase domain; KEGG: son:SO_0012 glutathione S-transferase family protein
YP_002355973.1	KEGG: son:SO_0714 monoheme cytochrome c
YP_002355974.1	PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: son:SO_0715 oxidoreductase, molybdopterin-binding
YP_002355975.1	KEGG: son:SO_0716 monoheme cytochrome c, putative
YP_002355976.1	PFAM: cytochrome c class I; KEGG: son:SO_0717 monoheme cytochrome c
YP_002355977.1	TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: saz:Sama_0022 UreA carboxylase
YP_002355978.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: spc:Sputcn32_0005 putative signal transduction protein
YP_002355979.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_002355980.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_002355981.1	KEGG: spc:Sputcn32_0008 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase
YP_002355982.1	PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; amidohydrolase; WD40 domain protein beta Propeller; KEGG: shw:Sputw3181_0009 amidohydrolase
YP_002355983.1	KEGG: shw:Sputw3181_0010 hypothetical protein
YP_002355984.1	TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs
YP_002355985.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shn:Shewana3_0022 diguanylate cyclase
YP_002355986.1	FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids
YP_002355987.1	includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids
YP_002355988.1	catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters
YP_002355989.1	PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: shm:Shewmr7_0018 protein of unknown function UPF0029
YP_002355990.1	TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: shn:Shewana3_0027 TrkH family potassium uptake protein
YP_002355991.1	KEGG: shn:Shewana3_0028 protoporphyrinogen oxidase
YP_002355992.1	PFAM: regulatory protein ArsR; KEGG: shn:Shewana3_0029 ArsR family transcriptional regulator
YP_002355993.1	KEGG: shn:Shewana3_0030 protoporphyrinogen oxidase
YP_002355994.1	TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: shm:Shewmr7_0023 potassium uptake protein, TrkH family
YP_002355995.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_002355996.1	TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: shw:Sputw3181_0022 sun protein
YP_002355997.1	TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: shw:Sputw3181_0023 methionyl-tRNA formyltransferase
YP_002355998.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_002355999.1	PFAM: Peptidoglycan-binding LysM; KEGG: shm:Shewmr7_0028 peptidoglycan-binding LysM
YP_002356000.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: shw:Sputw3181_0026 DNA protecting protein DprA
YP_002356001.1	PFAM: protein of unknown function DUF494; KEGG: shw:Sputw3181_0027 protein of unknown function DUF494
YP_002356002.1	PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: shw:Sputw3181_0028 DNA topoisomerase, type IA, zn finger domain protein
YP_002356003.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: shw:Sputw3181_0029 SUA5/YciO/YrdC/YwlC family protein
YP_002356004.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_002356005.1	PFAM: globin; KEGG: shw:Sputw3181_0031 globin
YP_002356006.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_002356007.1	PFAM: protein of unknown function DUF1488; KEGG: shw:Sputw3181_0033 protein of unknown function DUF1488
YP_002356008.1	KEGG: shw:Sputw3181_0034 carbonic anhydrase, family 3
YP_002356009.1	PFAM: protein of unknown function UPF0153; KEGG: shn:Shewana3_0046 hypothetical protein
YP_002356010.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: shw:Sputw3181_4042 transcriptional regulator, BadM/Rrf2 family
YP_002356011.1	PFAM: protein of unknown function DUF610 YibQ; KEGG: shm:Shewmr7_0040 protein of unknown function DUF610, YibQ
YP_002356012.1	KEGG: shn:Shewana3_0049 C-terminal processing peptidase-3; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41
YP_002356013.1	PFAM: Peptidase M23; KEGG: shw:Sputw3181_4039 peptidase M23B
YP_002356014.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_002356015.1	PFAM: Rhodanese domain protein; KEGG: shw:Sputw3181_4037 rhodanese domain protein
YP_002356016.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_002356017.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_002356018.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; KEGG: shw:Sputw3181_4034 HI0933 family protein
YP_002356019.1	PFAM: AAA-4 family protein; KEGG: ypy:YPK_4173 putative transcriptional regulator
YP_002356020.1	KEGG: she:Shewmr4_0051 TrkH family potassium uptake protein; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter
YP_002356021.1	PFAM: TrkA-N domain protein; KEGG: shw:Sputw3181_4031 TrkA-N domain protein
YP_002356022.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shw:Sputw3181_4030 two component transcriptional regulator, winged helix family
YP_002356023.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: shw:Sputw3181_4029 integral membrane sensor signal transduction histidine kinase
YP_002356024.1	PFAM: Pirin domain protein; KEGG: shw:Sputw3181_4028 pirin domain protein domain protein
YP_002356025.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: shm:Shewmr7_0054 signal transduction histidine kinase, LytS
YP_002356026.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: shm:Shewmr7_0055 response regulator receiver protein
YP_002356027.1	PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_0056 major facilitator superfamily MFS_1
YP_002356028.1	PFAM: protein of unknown function DUF81; KEGG: shm:Shewmr7_0058 protein of unknown function DUF81
YP_002356029.1	PFAM: NLP/P60 protein; KEGG: shn:Shewana3_0063 NLP/P60 protein
YP_002356030.1	PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_0064 major facilitator transporter
YP_002356031.1	SMART: regulatory protein LacI; KEGG: she:Shewmr4_0063 LacI family transcription regulator
YP_002356032.1	KEGG: shn:Shewana3_0066 alpha amylase, catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain
YP_002356033.1	PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_0065 major facilitator transporter
YP_002356034.1	TIGRFAM: outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shn:Shewana3_0068 TonB-dependent receptor
YP_002356035.1	PFAM: PfkB domain protein; KEGG: she:Shewmr4_0067 ribokinase-like domain-containing protein
YP_002356036.1	forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis
YP_002356037.1	KEGG: shw:Sputw3181_4024 hypothetical protein
YP_002356038.1	KEGG: spc:Sputcn32_0055 transport protein, putative
YP_002356039.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_4022 ABC transporter related
YP_002356040.1	PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: shw:Sputw3181_4021 TAP domain protein
YP_002356041.1	PFAM: regulatory protein GntR HTH; KEGG: shw:Sputw3181_4020 regulatory protein GntR, HTH
YP_002356042.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_4019 ABC transporter related
YP_002356043.1	KEGG: shw:Sputw3181_4018 hypothetical protein
YP_002356044.1	PFAM: AMP-dependent synthetase and ligase; KEGG: spc:Sputcn32_0061 AMP-dependent synthetase and ligase
YP_002356045.1	PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_1779 transposase IS116/IS110/IS902 family protein
YP_002356046.1	PFAM: thioesterase superfamily protein; KEGG: shn:Shewana3_0082 thioesterase superfamily protein
YP_002356047.1	PFAM: HPP family protein; KEGG: spc:Sputcn32_0064 HPP family protein+B94
YP_002356048.1	KEGG: spc:Sputcn32_0065 hypothetical protein
YP_002356049.1	PFAM: thioesterase superfamily protein; KEGG: shw:Sputw3181_4011 thioesterase superfamily protein
YP_002356050.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: spc:Sputcn32_0067 glutathione-dependent formaldehyde-activating, GFA
YP_002356051.1	PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: son:SO_0082 MerR family transcriptional regulator
YP_002356052.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: son:SO_0083 carboxymuconolactone decarboxylase family protein
YP_002356053.1	KEGG: shw:Sputw3181_4009 hypothetical protein
YP_002356054.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shw:Sputw3181_4008 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
YP_002356055.1	KEGG: shw:Sputw3181_4007 hypothetical protein
YP_002356056.1	KEGG: shn:Shewana3_0091 hypothetical protein
YP_002356057.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: shw:Sputw3181_4006 glycerophosphoryl diester phosphodiesterase
YP_002356058.1	PFAM: Negative transcriptional regulator; KEGG: pat:Patl_2431 negative transcriptional regulator
YP_002356059.1	KEGG: son:SO_0305 hypothetical protein
YP_002356060.1	PFAM: protein of unknown function DUF347; KEGG: bvi:Bcep1808_7223 hypothetical protein
YP_002356061.1	PFAM: regulatory protein MarR; KEGG: shw:Sputw3181_4002 transcriptional regulator, MarR family
YP_002356062.1	PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: spc:Sputcn32_0076 siderophore-interacting protein
YP_002356063.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002356064.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_002356065.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002356066.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_002356067.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_002356068.1	Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO_0101 selenium-containing formate dehydrogenase, nitrate inducible, alpha subunit
YP_002356069.1	TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: shn:Shewana3_0103 formate dehydrogenase beta subunit
YP_002356070.1	TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: shn:Shewana3_0104 formate dehydrogenase gamma subunit
YP_002356071.1	TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: shn:Shewana3_0105 formate dehydrogenase accessory protein FdhE
YP_002356072.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_002356073.1	TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: shn:Shewana3_0107 selenocysteine-specific translation elongation factor SelB
YP_002356074.1	involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth
YP_002356075.1	PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: she:Shewmr4_0109 putative inner membrane protein
YP_002356076.1	PFAM: SirA family protein; KEGG: shn:Shewana3_0110 hypothetical protein
YP_002356077.1	PFAM: peptidase M48 Ste24p; KEGG: shw:Sputw3181_3963 peptidase M48, Ste24p
YP_002356078.1	KEGG: shm:Shewmr7_0107 hypothetical protein
YP_002356079.1	PFAM: protein of unknown function DUF1311; KEGG: shw:Sputw3181_3962 hypothetical protein
YP_002356080.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spc:Sputcn32_0109 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002356081.1	KEGG: shm:Shewmr7_0109 hypothetical protein
YP_002356082.1	KEGG: spc:Sputcn32_0110 hypothetical protein
YP_002356083.1	PFAM: protein of unknown function DUF1090; KEGG: son:SO_0119 hypothetical protein
YP_002356084.1	KEGG: son:SO_0120 hypothetical protein
YP_002356085.1	PFAM: MscS Mechanosensitive ion channel; KEGG: shw:Sputw3181_3954 MscS mechanosensitive ion channel
YP_002356086.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: spc:Sputcn32_0119 lysine exporter protein LysE/YggA
YP_002356087.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: shw:Sputw3181_3952 phospholipid/glycerol acyltransferase
YP_002356088.1	KEGG: shw:Sputw3181_3951 hypothetical protein
YP_002356089.1	PFAM: protein of unknown function DUF833; KEGG: shw:Sputw3181_3950 protein of unknown function DUF833
YP_002356090.1	KEGG: shm:Shewmr7_0117 hypothetical protein
YP_002356091.1	PFAM: multiple antibiotic resistance (MarC)-related protein; Integral membrane protein TerC; KEGG: shn:Shewana3_0123 multiple antibiotic resistance (MarC)-related proteins
YP_002356092.1	TIGRFAM: M6 family metalloprotease domain protein; PFAM: PKD domain containing protein; peptidase M6 immune inhibitor A; KEGG: shw:Sputw3181_3947 peptidase M6, immune inhibitor A
YP_002356093.1	PFAM: Chorismate lyase; KEGG: shw:Sputw3181_3946 chorismate lyase
YP_002356094.1	PFAM: flagellar basal body-associated protein FliL; KEGG: son:SO_0132 flagellar basal body-associated protein FliL-like protein
YP_002356095.1	PFAM: protein of unknown function DUF890; KEGG: shw:Sputw3181_3944 putative SAM-dependent methyltransferase
YP_002356096.1	PFAM: protein of unknown function DUF333; KEGG: shn:Shewana3_0128 hypothetical protein
YP_002356097.1	KEGG: shw:Sputw3181_3943 hypothetical protein
YP_002356098.1	ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase
YP_002356099.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: shw:Sputw3181_3941 molybdenum cofactor synthesis domain
YP_002356100.1	PFAM: Ferritin Dps family protein; KEGG: shw:Sputw3181_3940 ferritin, Dps family protein
YP_002356101.1	KEGG: shn:Shewana3_0133 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002356102.1	DHBP synthase; functions during riboflavin biosynthesis
YP_002356103.1	PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: spc:Sputcn32_0135 oligopeptidase B
YP_002356104.1	PFAM: Excinuclease ABC C subunit domain protein; KEGG: shn:Shewana3_0136 excinuclease ABC subunit C
YP_002356105.1	PFAM: protein of unknown function DUF541; KEGG: saz:Sama_3310 hypothetical protein
YP_002356106.1	KEGG: swd:Swoo_0681 phenylacetic acid degradation-related protein
YP_002356107.1	KEGG: shw:Sputw3181_3928 lipoprotein, putative
YP_002356108.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shw:Sputw3181_3927 methyltransferase type 12
YP_002356109.1	PFAM: peptidase M14 carboxypeptidase A; KEGG: she:Shewmr4_0145 peptidase M14, carboxypeptidase A
YP_002356110.1	KEGG: shw:Sputw3181_3925 hypothetical protein
YP_002356111.1	PFAM: sodium:dicarboxylate symporter; KEGG: shw:Sputw3181_3924 sodium:dicarboxylate symporter
YP_002356112.1	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
YP_002356113.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_002356114.1	PFAM: RNA-binding S4 domain protein; KEGG: shw:Sputw3181_3706 RNA-binding S4 domain protein
YP_002356116.1	TIGRFAM: general secretion pathway protein C; KEGG: she:Shewmr4_0155 general secretion pathway protein C
YP_002356117.1	TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: shw:Sputw3181_3704 general secretion pathway protein D
YP_002356118.1	KEGG: shw:Sputw3181_3703 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase
YP_002356119.1	TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: shw:Sputw3181_3702 general secretion pathway protein F
YP_002356120.1	TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: shn:Shewana3_0154 general secretion pathway protein G
YP_002356121.1	TIGRFAM: general secretion pathway protein H; KEGG: son:SO_0170 general secretion pathway protein H
YP_002356122.1	TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: shm:Shewmr7_0156 general secretion pathway protein I
YP_002356123.1	TIGRFAM: general secretion pathway protein J; KEGG: shm:Shewmr7_0157 general secretion pathway protein J
YP_002356124.1	PFAM: General secretion pathway protein K; KEGG: shn:Shewana3_0158 general secretion pathway protein K
YP_002356126.1	TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: shm:Shewmr7_0159 general secretion pathway protein L
YP_002356127.1	PFAM: General secretion pathway M protein; KEGG: spc:Sputcn32_3558 general secretion pathway M protein
YP_002356128.1	PFAM: type II secretion system protein N; KEGG: shn:Shewana3_0161 type II secretion system protein N
YP_002356129.1	PFAM: Pili assembly chaperone, N-terminal; KEGG: shw:Sputw3181_3908 pili assembly chaperone
YP_002356130.1	PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: shw:Sputw3181_3907 fimbrial biogenesis outer membrane usher protein
YP_002356131.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002356132.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002356133.1	KEGG: shw:Sputw3181_3904 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein family 3; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002356134.1	PFAM: regulatory protein LuxR; response regulator receiver; KEGG: shw:Sputw3181_3903 two component transcriptional regulator, LuxR family
YP_002356135.1	PFAM: EAL domain protein; response regulator receiver; KEGG: shw:Sputw3181_3902 response regulator receiver modulated diguanylate phosphodiesterase
YP_002356136.1	TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: shw:Sputw3181_3901 O-succinylbenzoate-CoA ligase
YP_002356137.1	catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate
YP_002356138.1	PFAM: alpha/beta hydrolase fold; KEGG: shw:Sputw3181_3899 alpha/beta hydrolase fold
YP_002356139.1	SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis
YP_002356140.1	PFAM: regulatory protein LysR; KEGG: shn:Shewana3_3964 LysR family transcriptional regulator
YP_002356141.1	KEGG: shw:Sputw3181_3896 hypothetical protein
YP_002356142.1	KEGG: she:Shewmr4_3764 formate-dependent nitrite reductase
YP_002356143.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: she:Shewmr4_3763 twin-arginine translocation pathway signal
YP_002356144.1	TIGRFAM: cytochrome c nitrite reductase, NrfD subunit; PFAM: Polysulphide reductase NrfD; KEGG: shw:Sputw3181_3893 polysulphide reductase, NrfD
YP_002356146.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: shn:Shewana3_3959 AsnC family transcriptional regulator
YP_002356147.1	uncharacterized member of the APC superfamily of amino acid transporters; unknown function
YP_002356148.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: shn:Shewana3_3956 putative signal transduction protein
YP_002356149.1	PFAM: protein of unknown function DUF1332; KEGG: shw:Sputw3181_3890 protein of unknown function DUF1332
YP_002356150.1	KEGG: she:Shewmr4_3756 hypothetical protein
YP_002356151.1	KEGG: shw:Sputw3181_3888 hypothetical protein
YP_002356152.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: shw:Sputw3181_3887 Sel1 domain protein repeat-containing protein
YP_002356153.1	KEGG: shw:Sputw3181_3886 hypothetical protein
YP_002356154.1	PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3825 methyl-accepting chemotaxis sensory transducer
YP_002356155.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_3884 transcriptional regulator, LysR family
YP_002356156.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: shw:Sputw3181_3883 drug resistance transporter, Bcr/CflA subfamily
YP_002356157.1	KEGG: sse:Ssed_0255 hypothetical protein
YP_002356158.1	PFAM: DTW domain containing protein; KEGG: shw:Sputw3181_3882 DTW domain containing protein
YP_002356159.1	KEGG: shw:Sputw3181_3881 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002356160.1	KEGG: she:Shewmr4_3747 hypothetical protein
YP_002356161.1	PFAM: Methyltransferase type 11; KEGG: shn:Shewana3_3944 methyltransferase type 11
YP_002356162.1	KEGG: sdn:Sden_1470 putative orphan protein
YP_002356163.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: hch:HCH_05533 uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides
YP_002356164.1	PFAM: NIPSNAP family containing protein; KEGG: sse:Ssed_1304 NIPSNAP family containing protein
YP_002356165.1	SMART: regulatory protein ArsR; KEGG: hch:HCH_05536 transcriptional regulator
YP_002356168.1	KEGG: she:Shewmr4_3743 carboxypeptidase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_002356169.1	PFAM: peptidase M16 domain protein; KEGG: son:SO_4537.2 Zn-dependent peptidase
YP_002356170.1	PFAM: peptidase M16 domain protein; KEGG: shw:Sputw3181_0448 peptidase M16 domain protein
YP_002356171.1	PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: shw:Sputw3181_0447 peptidase S9, prolyl oligopeptidase active site domain protein
YP_002356172.1	KEGG: shn:Shewana3_3937 hypothetical protein
YP_002356173.1	TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: shw:Sputw3181_0443 RNA methyltransferase, TrmH family, group 2
YP_002356174.1	KEGG: son:SO_4528 hypothetical protein
YP_002356175.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: spc:Sputcn32_3499 hypothetical protein
YP_002356176.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_0406 transcriptional regulator, LysR family
YP_002356177.1	PFAM: Patatin; KEGG: shw:Sputw3181_0405 patatin
YP_002356178.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_0404 transcriptional regulator, LysR family
YP_002356179.1	IrgA; binds ferric enterobactin; irgA gene expression is repressed by Fur and induced by the divergently transcribed upstream gene irgB; outer membrane protein; involved in iron metabolism
YP_002356180.1	KEGG: shw:Sputw3181_0401 hypothetical protein
YP_002356181.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_002356182.1	PFAM: Bile acid:sodium symporter; KEGG: spc:Sputcn32_3507 bile acid:sodium symporter
YP_002356183.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: hch:HCH_06539 TPR repeat-containing protein
YP_002356184.1	KEGG: abo:ABO_1732 hypothetical protein
YP_002356185.1	KEGG: abo:ABO_1733 hypothetical protein
YP_002356186.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_3728 methyl-accepting chemotaxis sensory transducer
YP_002356187.1	TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: shw:Sputw3181_3877 formate dehydrogenase, gamma subunit
YP_002356188.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3876 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_002356189.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: shm:Shewmr7_3795 formate dehydrogenase alpha subunit
YP_002356190.1	TIGRFAM: formate dehydrogenase region TAT target; KEGG: shn:Shewana3_3919 hypothetical protein
YP_002356191.1	TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: spc:Sputcn32_0335 formate dehydrogenase, gamma subunit
YP_002356192.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shn:Shewana3_3917 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_002356193.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: she:Shewmr4_3720 formate dehydrogenase alpha subunit
YP_002356194.1	TIGRFAM: formate dehydrogenase region TAT target; KEGG: shn:Shewana3_3915 hypothetical protein
YP_002356195.1	PFAM: cytoplasmic chaperone TorD family protein; KEGG: shw:Sputw3181_3869 cytoplasmic chaperone TorD family protein
YP_002356196.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3868 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_002356197.1	KEGG: shw:Sputw3181_3867 hypothetical protein
YP_002356198.1	KEGG: shm:Shewmr7_3786 hypothetical protein
YP_002356199.1	PFAM: formate dehydrogenase subunit FdhD; KEGG: shw:Sputw3181_3865 formate dehydrogenase, subunit FdhD
YP_002356200.1	TIGRFAM: DNA binding domain protein, excisionase family; KEGG: shw:Sputw3181_3864 DNA binding domain, excisionase family
YP_002356201.1	KEGG: shw:Sputw3181_0195 hypothetical protein
YP_002356202.1	KEGG: shw:Sputw3181_0196 hypothetical protein
YP_002356203.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_0205 GCN5-related N-acetyltransferase
YP_002356204.1	PFAM: ATP-binding region ATPase domain protein; KEGG: spc:Sputcn32_0356 integral membrane sensor signal transduction histidine kinase
YP_002356205.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: spc:Sputcn32_0357 two component transcriptional regulator
YP_002356206.1	PFAM: Propeptide PepSY amd peptidase M4; KEGG: shn:Shewana3_0242 peptidase
YP_002356207.1	KEGG: shw:Sputw3181_0209 diheme cytochrome c
YP_002356208.1	PFAM: Domain of unknown function DUF1924; KEGG: shw:Sputw3181_0210 cytochrome c-type protein Shp
YP_002356209.1	PFAM: cytochrome B561; KEGG: shw:Sputw3181_0211 cytochrome b561
YP_002356210.1	KEGG: spc:Sputcn32_0362 hypothetical protein
YP_002356211.1	KEGG: spc:Sputcn32_0363 hypothetical protein
YP_002356212.1	PFAM: Aldehyde Dehydrogenase; KEGG: shw:Sputw3181_0214 aldehyde dehydrogenase (NAD(+))
YP_002356213.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: shw:Sputw3181_0215 GAF modulated sigma54 specific transcriptional regulator, fis family
YP_002356214.1	TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: spc:Sputcn32_3530 alcohol dehydrogenase
YP_002356215.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: son:SO_4478 sensor protein CpxA
YP_002356216.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shn:Shewana3_0253 two component transcriptional regulator
YP_002356217.1	PFAM: protein of unknown function Spy-related; KEGG: she:Shewmr4_0253 protein of unknown function, Spy-related
YP_002356218.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: shw:Sputw3181_0219 cation diffusion facilitator family transporter
YP_002356219.1	KEGG: shw:Sputw3181_0220 hypothetical protein
YP_002356220.1	PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: shm:Shewmr7_3765 OmpA domain protein transmembrane region-containing protein
YP_002356221.1	KEGG: shw:Sputw3181_0221 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_002356222.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: shn:Shewana3_0259 signal transduction histidine kinase, nitrogen specific, NtrB
YP_002356223.1	KEGG: son:SO_4470 hypothetical protein
YP_002356225.1	PFAM: Glutathione S-transferase domain; KEGG: sdn:Sden_1385 glutathione S-transferase-like protein
YP_002356226.1	PFAM: ThiJ/PfpI domain protein; KEGG: shw:Sputw3181_0226 ThiJ/PfpI domain protein
YP_002356227.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: shw:Sputw3181_0227 iron-containing alcohol dehydrogenase
YP_002356228.1	PFAM: regulatory protein TetR; KEGG: shw:Sputw3181_0228 transcriptional regulator, TetR family
YP_002356229.1	PFAM: protein of unknown function DUF1255; KEGG: shw:Sputw3181_0229 protein of unknown function DUF1255
YP_002356230.1	PFAM: chemotaxis sensory transducer; KEGG: spc:Sputcn32_0380 methyl-accepting chemotaxis sensory transducer
YP_002356231.1	PFAM: protein of unknown function DUF323; Methyltransferase type 11; Methyltransferase type 12; KEGG: spc:Sputcn32_0381 hypothetical protein
YP_002356232.1	PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: shn:Shewana3_0266 2OG-Fe(II) oxygenase
YP_002356233.1	KEGG: shw:Sputw3181_0236 hypothetical protein
YP_002356234.1	KEGG: son:SO_4461 hypothetical protein
YP_002356235.1	PFAM: PfkB domain protein; KEGG: shw:Sputw3181_0237 PfkB domain protein
YP_002356236.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shw:Sputw3181_0238 diguanylate cyclase
YP_002356237.1	PFAM: 3-alpha domain protein; MOSC domain containing protein; KEGG: shw:Sputw3181_0239 MOSC domain containing protein
YP_002356238.1	KEGG: shw:Sputw3181_0240 hypothetical protein
YP_002356239.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shw:Sputw3181_0241 methyl-accepting chemotaxis sensory transducer
YP_002356240.1	PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: spc:Sputcn32_0388 electron-transferring-flavoprotein dehydrogenase
YP_002356241.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_002356242.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_002356243.1	TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: shw:Sputw3181_0245 molybdopterin converting factor, subunit 1
YP_002356244.1	PFAM: molybdopterin biosynthesis MoaE protein; KEGG: shw:Sputw3181_0246 molybdopterin biosynthesis MoaE
YP_002356245.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: she:Shewmr4_0277 molybdenum ABC transporter, periplasmic molybdate-binding protein
YP_002356246.1	TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shw:Sputw3181_0248 molybdate ABC transporter, inner membrane subunit
YP_002356247.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_0249 ABC transporter related
YP_002356248.1	PFAM: extracellular solute-binding protein family 3; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: son:SO_4445 response regulator/sensor histidine kinase
YP_002356249.1	PFAM: regulatory protein LuxR; response regulator receiver; KEGG: son:SO_4444 capsular synthesis regulator component B, putative
YP_002356250.1	KEGG: son:SO_4443 hypothetical protein
YP_002356251.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002356252.1	KEGG: asa:ASA_3281 hypothetical protein
YP_002356253.1	KEGG: son:SO_4434 hypothetical protein
YP_002356254.1	PFAM: EAL domain protein; KEGG: son:SO_4433 hypothetical protein
YP_002356255.1	KEGG: son:SO_4430 hypothetical protein
YP_002356256.1	KEGG: shn:Shewana3_0281 hypothetical protein
YP_002356257.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shw:Sputw3181_0251 two component transcriptional regulator, winged helix family
YP_002356258.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: son:SO_4427 sensor histidine kinase
YP_002356259.1	TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: spc:Sputcn32_0399 pseudouridine synthase Rlu family protein
YP_002356260.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO_4425 GGDEF family protein
YP_002356261.1	PFAM: protein of unknown function UPF0057; KEGG: shw:Sputw3181_0254 protein of unknown function UPF0057
YP_002356262.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spc:Sputcn32_0401 TonB-dependent receptor
YP_002356263.1	KEGG: shw:Sputw3181_0256 hypothetical protein
YP_002356264.1	PFAM: Peptidase M23; KEGG: spc:Sputcn32_0403 peptidase M23B
YP_002356265.1	KEGG: spc:Sputcn32_0404 hypothetical protein
YP_002356266.1	functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters
YP_002356267.1	PFAM: Domain of unknown function DUF1864; KEGG: son:SO_4414 hypothetical protein
YP_002356268.1	PFAM: aminotransferase class V; KEGG: shw:Sputw3181_0261 aminotransferase, class V
YP_002356269.1	PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_3722 sodium:dicarboxylate symporter
YP_002356270.1	forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme
YP_002356271.1	TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: shw:Sputw3181_0267 GTP-binding protein TypA
YP_002356273.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shw:Sputw3181_0268 diguanylate cyclase
YP_002356274.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_0270 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_002356275.1	PFAM: 2OG-Fe(II) oxygenase; KEGG: shw:Sputw3181_3445 2OG-Fe(II) oxygenase
YP_002356276.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: shw:Sputw3181_3444 methionine gamma-lyase
YP_002356277.1	KEGG: shn:Shewana3_0309 hypothetical protein
YP_002356278.1	KEGG: she:Shewmr4_0315 hypothetical protein
YP_002356279.1	RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease
YP_002356280.1	PFAM: alpha/beta hydrolase fold; KEGG: son:SO_4400 proline iminopeptidase, putative
YP_002356281.1	KEGG: son:SO_4399 hypothetical protein
YP_002356282.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_002356283.1	TIGRFAM: thioesterase domain protein; PFAM: Thioesterase putative; KEGG: she:Shewmr4_0320 thioesterase domain-containing protein
YP_002356284.1	FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds
YP_002356285.1	KEGG: son:SO_4395 hypothetical protein
YP_002356286.1	PFAM: Rhodanese domain protein; KEGG: shn:Shewana3_0318 rhodanese domain-containing protein
YP_002356287.1	PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: spc:Sputcn32_0424 XRE family transcriptional regulator
YP_002356288.1	TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: shw:Sputw3181_0279 benzoate transporter
YP_002356289.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_0280 GCN5-related N-acetyltransferase
YP_002356290.1	KEGG: mbu:Mbur_1752 hypothetical protein
YP_002356291.1	KEGG: son:SO_0894 hypothetical protein
YP_002356292.1	KEGG: shw:Sputw3181_0284 hypothetical protein
YP_002356293.1	FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_002356294.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002356295.1	PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: spc:Sputcn32_0433 thioester dehydrase family protein
YP_002356296.1	FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_002356297.1	KEGG: shw:Sputw3181_0289 hypothetical protein
YP_002356298.1	PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: shw:Sputw3181_0290 monooxygenase, FAD-binding
YP_002356299.1	KEGG: shw:Sputw3181_0291 hypothetical protein
YP_002356300.1	KEGG: shw:Sputw3181_0292 hypothetical protein
YP_002356301.1	PFAM: thioesterase superfamily protein; KEGG: spc:Sputcn32_0439 thioesterase superfamily protein
YP_002356302.1	PFAM: phenylalanine/histidine ammonia-lyase; KEGG: spc:Sputcn32_0440 histidine ammonia-lyase
YP_002356303.1	PFAM: glycosyl transferase family 2; lipid A biosynthesis acyltransferase; KEGG: spc:Sputcn32_0441 glycosyl transferase family protein
YP_002356304.1	KEGG: shw:Sputw3181_0296 thioester dehydrase family protein
YP_002356305.1	KEGG: spc:Sputcn32_0443 hypothetical protein
YP_002356306.1	KEGG: shw:Sputw3181_0298 hypothetical protein
YP_002356307.1	carries the fatty acid chain in fatty acid biosynthesis
YP_002356308.1	KEGG: shw:Sputw3181_0300 acyl carrier protein, putative
YP_002356309.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: spc:Sputcn32_0447 phospholipid/glycerol acyltransferase
YP_002356310.1	KEGG: shw:Sputw3181_0302 hypothetical protein
YP_002356311.1	KEGG: shw:Sputw3181_0303 hypothetical protein
YP_002356312.1	catalyzes branch migration in Holliday junction intermediates
YP_002356313.1	PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: son:SO_0351 LuxR family DNA-binding response regulator
YP_002356314.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: shn:Shewana3_3817 putative signal transduction histidine kinase
YP_002356315.1	KEGG: son:SO_0353 TPR domain-containing protein
YP_002356316.1	TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: shw:Sputw3181_3775 Na+/Ca+ antiporter, CaCA family
YP_002356317.1	PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO_0355 AMP-binding protein
YP_002356318.1	TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: shn:Shewana3_3813 putative endoribonuclease L-PSP
YP_002356319.1	KEGG: shw:Sputw3181_3772 bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region
YP_002356320.1	promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_002356321.1	Essential for recycling GMP and indirectly, cGMP
YP_002356322.1	KEGG: shn:Shewana3_3809 hypothetical protein
YP_002356323.1	KEGG: spc:Sputcn32_3628 hypothetical protein
YP_002356324.1	PFAM: aminoglycoside phosphotransferase; KEGG: shw:Sputw3181_3767 aminoglycoside phosphotransferase
YP_002356325.1	PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_3609 twin-arginine translocation pathway signal
YP_002356326.1	KEGG: sfr:Sfri_3844 hypothetical protein
YP_002356327.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: spc:Sputcn32_3625 filamentation induced by cAMP protein Fic
YP_002356328.1	PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: son:SO_0368 helicase
YP_002356329.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_3800 LysR family transcriptional regulator
YP_002356330.1	manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily
YP_002356331.1	KEGG: slo:Shew_1250 hypothetical protein
YP_002356332.1	KEGG: spc:Sputcn32_3512 hypothetical protein
YP_002356333.1	KEGG: spl:Spea_1254 transposase
YP_002356334.1	PFAM: integrase family protein; KEGG: spc:Sputcn32_3517 phage integrase family protein
YP_002356335.1	KEGG: spc:Sputcn32_3518 hypothetical protein
YP_002356336.1	KEGG: she:Shewmr4_1698 hypothetical protein
YP_002356337.1	PFAM: DNA repair protein RadC; KEGG: shm:Shewmr7_1776 DNA repair protein RadC
YP_002356338.1	PFAM: Prophage CP4-57 regulatory; KEGG: spl:Spea_1260 phage transcriptional regulator, AlpA
YP_002356341.1	PFAM: Prophage CP4-57 regulatory; KEGG: spc:Sputcn32_3522 phage transcriptional regulator, AlpA
YP_002356342.1	KEGG: shl:Shal_4050 hypothetical protein
YP_002356343.1	PFAM: helix-turn-helix domain protein; KEGG: slo:Shew_1266 XRE family transcriptional regulator
YP_002356344.1	KEGG: dde:Dde_2500 XRE family transcriptional regulator
YP_002356345.1	PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: neu:NE2499 DEAD/DEAH box helicase
YP_002356346.1	PFAM: N-6 DNA methylase; KEGG: mma:MM_3147 type I restriction-modification system specificity subunit
YP_002356347.1	PFAM: restriction modification system DNA specificity domain; KEGG: nth:Nther_1991 restriction modification system DNA specificity domain
YP_002356348.1	KEGG: pfl:PFL_2963 hypothetical protein
YP_002356349.1	KEGG: pfl:PFL_2962 hypothetical protein
YP_002356350.1	PFAM: integrase family protein; KEGG: sdn:Sden_0317 phage integrase
YP_002356351.1	PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: shw:Sputw3181_0331 hypothetical protein
YP_002356352.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_002356353.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_002356354.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_002356355.1	PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: son:SO_4252 prolyl oligopeptidase family protein
YP_002356356.1	FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly
YP_002356357.1	catalyzes the formation of dUMP from dUTP
YP_002356358.1	KEGG: spc:Sputcn32_0461 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein
YP_002356359.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_002356360.1	required for 70S ribosome assembly
YP_002356361.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_002356362.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_002356363.1	KEGG: shw:Sputw3181_0369 hypothetical protein
YP_002356364.1	TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: shw:Sputw3181_0370 RarD protein, DMT superfamily transporter
YP_002356365.1	PFAM: thioesterase superfamily protein; KEGG: shw:Sputw3181_0371 hypothetical protein
YP_002356366.1	KEGG: shw:Sputw3181_0372 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases
YP_002356367.1	SMART: Tetratricopeptide domain protein; KEGG: shw:Sputw3181_0373 tetratricopeptide domain protein
YP_002356368.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_002356369.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_002356370.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_002356371.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_002356372.1	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: shw:Sputw3181_0378 membrane protein involved in aromatic hydrocarbon degradation
YP_002356373.1	TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: shw:Sputw3181_0379 glycerol kinase
YP_002356374.1	KEGG: shw:Sputw3181_0380 hypothetical protein
YP_002356375.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_002356376.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: she:Shewmr4_3578 S-adenosyl-methyltransferase MraW
YP_002356377.1	PFAM: cell division protein FtsL; KEGG: she:Shewmr4_3577 cell division protein FtsL
YP_002356378.1	PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: shn:Shewana3_3749 peptidoglycan synthetase FtsI
YP_002356379.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_002356380.1	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: shw:Sputw3181_0386 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase
YP_002356381.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_002356382.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_002356383.1	TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: shn:Shewana3_3744 cell division protein FtsW
YP_002356384.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_002356385.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_002356386.1	PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: shn:Shewana3_3741 polypeptide-transport-associated domain-containing protein
YP_002356387.1	PFAM: cell division protein FtsA; KEGG: shw:Sputw3181_0393 cell division protein FtsA
YP_002356388.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_002356389.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_002356390.1	PFAM: protein of unknown function DUF721; KEGG: shw:Sputw3181_0396 hypothetical protein
YP_002356391.1	PFAM: Peptidase M23; KEGG: shw:Sputw3181_0397 peptidase M23B
YP_002356392.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_002356393.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_002356394.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: spc:Sputcn32_0498 diguanylate cyclase
YP_002356395.1	PFAM: TatD-related deoxyribonuclease; KEGG: shw:Sputw3181_3671 TatD-related deoxyribonuclease
YP_002356396.1	KEGG: shw:Sputw3181_3670 hypothetical protein
YP_002356397.1	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: shw:Sputw3181_3669 sec-independent protein translocase, TatC subunit
YP_002356398.1	TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: shw:Sputw3181_3668 twin-arginine translocation protein, TatB subunit
YP_002356399.1	TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: shw:Sputw3181_3667 twin-arginine translocation protein, TatA/E family subunit
YP_002356400.1	TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: shm:Shewmr7_0403 2-octaprenylphenol hydroxylase
YP_002356401.1	PFAM: Sterol-binding domain protein; KEGG: shn:Shewana3_3726 hypothetical protein
YP_002356402.1	TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: shw:Sputw3181_3664 ubiquinone/menaquinone biosynthesis methyltransferase
YP_002356403.1	PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: spc:Sputcn32_0507 arginase/agmatinase/formiminoglutamase
YP_002356404.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_002356405.1	KEGG: shw:Sputw3181_3661 hypothetical protein
YP_002356406.1	PFAM: phosphoesterase PA-phosphatase related; KEGG: son:SO_4195 PAP2 family protein
YP_002356407.1	KEGG: shm:Shewmr7_0410 hypothetical protein
YP_002356408.1	KEGG: shw:Sputw3181_3658 hypothetical protein
YP_002356409.1	KEGG: sfr:Sfri_3708 hypothetical protein
YP_002356410.1	PFAM: SNARE associated Golgi protein; KEGG: spc:Sputcn32_0514 DedA family protein
YP_002356411.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_002356412.1	PFAM: conserved hypothetical protein; KEGG: shn:Shewana3_3716 hypothetical protein
YP_002356413.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shm:Shewmr7_0415 TonB-dependent receptor
YP_002356414.1	KEGG: shn:Shewana3_3714 hypothetical protein
YP_002356415.1	PFAM: peptidase S16 lon domain protein; KEGG: shm:Shewmr7_0417 ATP-dependent protease La (LON) domain protein, putative
YP_002356416.1	PFAM: pseudouridine synthase; KEGG: shw:Sputw3181_3651 pseudouridine synthase
YP_002356417.1	KEGG: shn:Shewana3_3711 hypothetical protein
YP_002356418.1	KEGG: shm:Shewmr7_0423 hypothetical protein
YP_002356419.1	PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: son:SO_4174 NAD dependent epimerase/dehydratase family protein
YP_002356420.1	PFAM: ATP-binding region ATPase domain protein; KEGG: she:Shewmr4_3530 periplasmic sensor signal transduction histidine kinase
YP_002356421.1	PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: son:SO_4172 DNA-binding response regulator
YP_002356422.1	PFAM: PKD domain containing protein; peptidase M4 thermolysin; Propeptide PepSY amd peptidase M4; peptidase domain protein; Peptidase M4 thermolysin; KEGG: sdn:Sden_3015 peptidase M4, thermolysin
YP_002356423.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: spc:Sputcn32_0523 C factor cell-cell signaling protein
YP_002356424.1	PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: shw:Sputw3181_3646 deoxyribodipyrimidine photolyase-related protein
YP_002356426.1	KEGG: vpa:VPA1256 hypothetical protein
YP_002356428.1	PFAM: protein of unknown function DUF971; KEGG: shn:Shewana3_3701 hypothetical protein
YP_002356429.1	heat shock protein involved in degradation of misfolded proteins
YP_002356430.1	heat shock protein involved in degradation of misfolded proteins
YP_002356431.1	PFAM: bifunctional deaminase-reductase domain protein; KEGG: spc:Sputcn32_0531 deaminase-reductase domain-containing protein
YP_002356432.1	KEGG: shw:Sputw3181_3639 hypothetical protein
YP_002356434.1	KEGG: spc:Sputcn32_0533 flagellar biosynthesis protein, putative
YP_002356435.1	PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: shm:Shewmr7_0436 two component transcriptional regulator, LuxR family
YP_002356436.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: spc:Sputcn32_0535 histidine kinase
YP_002356437.1	KEGG: son:SO_4154 LysR family transcriptional regulator
YP_002356438.1	PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: shm:Shewmr7_0438 sulphate transporter
YP_002356439.1	KEGG: shn:Shewana3_3690 cytochrome c, putative
YP_002356440.1	KEGG: son:SO_4143 hypothetical protein
YP_002356441.1	KEGG: she:Shewmr4_3511 cytochrome c family protein
YP_002356442.1	KEGG: shw:Sputw3181_3635 hypothetical protein
YP_002356443.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: shw:Sputw3181_3634 hypothetical protein
YP_002356444.1	PFAM: MscS Mechanosensitive ion channel; KEGG: shw:Sputw3181_3633 MscS mechanosensitive ion channel
YP_002356445.1	KEGG: shw:Sputw3181_3632 hypothetical protein
YP_002356446.1	PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: shw:Sputw3181_3631 diaminopimelate decarboxylase
YP_002356447.1	KEGG: shn:Shewana3_3681 hypothetical protein
YP_002356448.1	catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway
YP_002356449.1	PFAM: nucleoside-specific channel-forming protein Tsx; KEGG: shw:Sputw3181_3628 hypothetical protein
YP_002356450.1	PFAM: protein of unknown function DUF107; KEGG: shw:Sputw3181_3627 protein of unknown function DUF107
YP_002356451.1	PFAM: band 7 protein; KEGG: shw:Sputw3181_3626 band 7 protein
YP_002356452.1	PFAM: band 7 protein; KEGG: son:SO_4128 SPFH domain-containing protein/band 7 family protein
YP_002356453.1	KEGG: shw:Sputw3181_3624 hypothetical protein
YP_002356454.1	PFAM: Sporulation domain protein; KEGG: shw:Sputw3181_3623 sporulation domain protein
YP_002356455.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_002356456.1	KEGG: shw:Sputw3181_3621 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases
YP_002356457.1	KEGG: shm:Shewmr7_0458 hypothetical protein
YP_002356458.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_002356459.1	PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: shw:Sputw3181_3618 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))
YP_002356460.1	regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules
YP_002356461.1	KEGG: son:SO_4114.2 biogenesis protein MshI
YP_002356462.1	KEGG: she:Shewmr4_3489 hypothetical protein
YP_002356463.1	KEGG: spc:Sputcn32_0558 MSHA biogenesis protein MshJ
YP_002356464.1	KEGG: shw:Sputw3181_3613 MSHA biogenesis protein MshK
YP_002356465.1	TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB short domain; KEGG: son:SO_4112 MSHA biogenesis protein MshL
YP_002356466.1	KEGG: she:Shewmr4_3485 MSHA biogenesis protein MshM
YP_002356467.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_0468 tetratricopeptide TPR_2 repeat protein
YP_002356468.1	PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: shw:Sputw3181_3609 type II secretion system protein E
YP_002356469.1	PFAM: type II secretion system protein; KEGG: shw:Sputw3181_3608 type II secretion system protein
YP_002356470.1	KEGG: spc:Sputcn32_0565 hypothetical protein
YP_002356471.1	KEGG: son:SO_4106 MSHA pilin protein MshB
YP_002356472.1	KEGG: slo:Shew_0396 methylation site containing protein
YP_002356473.1	KEGG: sfr:Sfri_3744 methylation site containing protein
YP_002356474.1	KEGG: son:SO_4104 MSHA pilin protein MshC
YP_002356475.1	KEGG: shm:Shewmr7_0475 methylation site containing protein
YP_002356476.1	KEGG: shw:Sputw3181_3601 MSHA biogenesis protein MshO
YP_002356477.1	KEGG: spc:Sputcn32_0572 MSHA biogenesis protein MshP
YP_002356478.1	KEGG: sfr:Sfri_3739 hypothetical protein
YP_002356479.1	functions in MreBCD complex in some organisms
YP_002356480.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_002356481.1	TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: shw:Sputw3181_3596 rod shape-determining protein MreD
YP_002356482.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: shw:Sputw3181_3595 maf protein
YP_002356483.1	involved in the processing of the 5'end of 16S rRNA
YP_002356484.1	KEGG: shw:Sputw3181_3593 hypothetical protein
YP_002356485.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: spc:Sputcn32_0580 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_002356486.1	PFAM: peptidase U62 modulator of DNA gyrase; KEGG: shw:Sputw3181_3591 peptidase U62, modulator of DNA gyrase
YP_002356487.1	PFAM: outer membrane efflux protein; KEGG: shm:Shewmr7_0487 outer membrane efflux protein
YP_002356488.1	PFAM: secretion protein HlyD family protein; KEGG: shw:Sputw3181_3589 secretion protein HlyD family protein
YP_002356489.1	PFAM: ABC-2 type transporter; KEGG: shw:Sputw3181_3588 ABC-2 type transporter
YP_002356490.1	PFAM: ABC-2 type transporter; KEGG: spc:Sputcn32_0585 ABC-2 type transporter
YP_002356492.1	PFAM: amino acid permease-associated region; KEGG: spc:Sputcn32_0587 amino acid permease-associated region
YP_002356493.1	PFAM: Ig domain protein group 1 domain protein; KEGG: shn:Shewana3_3633 Ig domain-containing protein
YP_002356494.1	PFAM: protein of unknown function DUF615; KEGG: shw:Sputw3181_3579 hypothetical protein
YP_002356495.1	PFAM: peptidase U62 modulator of DNA gyrase; KEGG: shw:Sputw3181_3578 peptidase U62, modulator of DNA gyrase
YP_002356496.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shw:Sputw3181_3577 TonB-dependent receptor
YP_002356497.1	KEGG: shm:Shewmr7_0497 hypothetical protein
YP_002356498.1	PFAM: protein of unknown function DUF331; KEGG: shw:Sputw3181_3575 protein of unknown function DUF331
YP_002356499.1	TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; fumarate hydratase class II; KEGG: spc:Sputcn32_0598 fumarate hydratase, class II
YP_002356500.1	catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit
YP_002356501.1	PFAM: protein of unknown function DUF541; KEGG: shw:Sputw3181_3572 hypothetical protein
YP_002356502.1	PFAM: EAL domain protein; KEGG: spc:Sputcn32_0601 diguanylate phosphodiesterase
YP_002356503.1	KEGG: sdn:Sden_1944 hypothetical protein
YP_002356504.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shw:Sputw3181_3570 methyltransferase type 11
YP_002356505.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002356506.1	TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: ppr:PBPRA1430 putative nicotinamide mononucleotide transporter
YP_002356507.1	PFAM: purine or other phosphorylase family 1; KEGG: vvy:VVA0211 uridine phosphorylase
YP_002356508.1	PFAM: cyclic nucleotide-binding; KEGG: vpa:VPA0656 putative cyclic nucleotide binding protein
YP_002356509.1	KEGG: saz:Sama_1558 hypothetical protein
YP_002356510.1	PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: shw:Sputw3181_3568 OmpA domain protein transmembrane region-containing protein
YP_002356511.1	KEGG: psb:Psyr_3719 hypothetical protein
YP_002356512.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_002356513.1	KEGG: spc:Sputcn32_0609 hypothetical protein
YP_002356514.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: smd:Smed_0005 activator of HSP90 ATPase 1 family protein
YP_002356515.1	PFAM: pentapeptide repeat protein; KEGG: shw:Sputw3181_3561 pentapeptide repeat protein
YP_002356516.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO_4062 polysulfide reductase, subunit A
YP_002356517.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3558 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_002356518.1	PFAM: Polysulphide reductase NrfD; KEGG: shw:Sputw3181_3557 polysulphide reductase, NrfD
YP_002356519.1	PFAM: protein of unknown function DUF81; KEGG: shw:Sputw3181_3556 protein of unknown function DUF81
YP_002356520.1	when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis
YP_002356521.1	KEGG: spc:Sputcn32_0616 O-succinylhomoserine (thiol)-lyase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein
YP_002356522.1	multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways
YP_002356523.1	MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor
YP_002356524.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shw:Sputw3181_3551 methyl-accepting chemotaxis sensory transducer
YP_002356526.1	PFAM: regulatory protein MarR; KEGG: shw:Sputw3181_3550 transcriptional regulator, MarR family
YP_002356527.1	PFAM: secretion protein HlyD family protein; KEGG: shw:Sputw3181_3549 secretion protein HlyD family protein
YP_002356528.1	KEGG: spc:Sputcn32_0622 hypothetical protein
YP_002356529.1	KEGG: shw:Sputw3181_3547 cytochrome c family protein
YP_002356530.1	PFAM: cytochrome c class I; KEGG: shw:Sputw3181_3546 cytochrome c, class I
YP_002356531.1	KEGG: slo:Shew_1469 hypothetical protein
YP_002356532.1	KEGG: shw:Sputw3181_3543 hypothetical protein
YP_002356533.1	TIGRFAM: TonB family protein; KEGG: shw:Sputw3181_3542 TonB family protein
YP_002356534.1	KEGG: spc:Sputcn32_0633 hydratase/decarboxylase family protein
YP_002356536.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: shw:Sputw3181_3540 protein of unknown function DUF6, transmembrane
YP_002356537.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shw:Sputw3181_3539 HAD-superfamily hydrolase, subfamily IA, variant 1
YP_002356538.1	KEGG: shw:Sputw3181_3538 hypothetical protein
YP_002356539.1	KEGG: swd:Swoo_3821 hypothetical protein
YP_002356540.1	PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shw:Sputw3181_3537 DEAD/DEAH box helicase domain protein
YP_002356541.1	PFAM: peptidase M20; peptidase M28; KEGG: shn:Shewana3_3594 peptidase M28
YP_002356542.1	TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: shw:Sputw3181_3536 excinuclease ABC, A subunit
YP_002356543.1	PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_3591 major facilitator transporter
YP_002356544.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: shw:Sputw3181_3534 single-strand binding protein
YP_002356545.1	PFAM: integrase family protein; KEGG: xac:XAC2904 integrase/recombinase
YP_002356546.1	PFAM: integrase family protein; KEGG: xac:XAC2903 hypothetical protein
YP_002356547.1	KEGG: xac:XAC2902 hypothetical protein
YP_002356548.1	KEGG: xac:XAC2901 hypothetical protein
YP_002356549.1	KEGG: shn:Shewana3_2918 hypothetical protein
YP_002356550.1	SMART: AAA ATPase; KEGG: shn:Shewana3_2919 DNA helicase/exodeoxyribonuclease V, alpha subunit
YP_002356551.1	PFAM: transposase IS4 family protein; KEGG: plu:plu3796 hypothetical protein
YP_002356552.1	TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; KEGG: spl:Spea_1418 UDP-glucose 6-dehydrogenase
YP_002356554.1	PFAM: Domain of unknown function DUF1835; KEGG: btl:BALH_2360 hypothetical protein
YP_002356555.1	PFAM: transposase IS4 family protein; KEGG: plu:plu3796 hypothetical protein
YP_002356557.1	KEGG: eta:ETA_30400 hypothetical protein
YP_002356558.1	KEGG: ecf:ECH74115_B0001 hypothetical protein
YP_002356559.1	KEGG: plu:plu0971 insecticidal toxin complex protein TcdA5
YP_002356560.1	PFAM: virulence plasmid 65kDa B protein; FG-GAP repeat protein; KEGG: ses:SARI_00654 hypothetical protein
YP_002356561.1	TIGRFAM: YD repeat protein; KEGG: ypi:YpsIP31758_1823 putative toxin protein
YP_002356562.1	TIGRFAM: YD repeat protein; KEGG: ypi:YpsIP31758_1823 putative toxin protein
YP_002356563.1	PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: sed:SeD_B0011 RlgA
YP_002356565.1	KEGG: ppr:PBPRA2822 hypothetical protein
YP_002356566.1	PFAM: Ig domain protein group 1 domain protein; KEGG: vha:VIBHAR_01641 hypothetical protein
YP_002356567.1	PFAM: Ig domain protein group 1 domain protein; KEGG: vha:VIBHAR_01641 hypothetical protein
YP_002356570.1	KEGG: spl:Spea_2708 hypothetical protein
YP_002356571.1	KEGG: shl:Shal_2793 hypothetical protein
YP_002356572.1	KEGG: shl:Shal_2792 hypothetical protein
YP_002356573.1	KEGG: gbm:Gbem_0309 hypothetical protein
YP_002356574.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002356575.1	PFAM: Ig domain protein group 1 domain protein; KEGG: vha:VIBHAR_01641 hypothetical protein
YP_002356576.1	PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: swd:Swoo_1909 OmpA domain-containing protein
YP_002356577.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002356578.1	KEGG: son:SO_A0033 hypothetical protein
YP_002356579.1	KEGG: mmw:Mmwyl1_2458 SMC domain-containing protein
YP_002356580.1	TIGRFAM: outer membrane insertion C-terminal signal; PFAM: porin Gram-negative type; KEGG: sfr:Sfri_0677 porin, gram-negative type
YP_002356581.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_002356582.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_002356583.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit
YP_002356584.1	TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter; KEGG: sfr:Sfri_0681 anaerobic C4-dicarboxylate antiporter, Dcu family protein
YP_002356585.1	catalyzes the formation of fumarate from aspartate
YP_002356586.1	KEGG: asa:ASA_0472 L-asparaginase II; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase
YP_002356587.1	PFAM: transposase IS4 family protein; KEGG: plu:plu3796 hypothetical protein
YP_002356588.1	PFAM: peptidase M16 domain protein; KEGG: shw:Sputw3181_0679 peptidase M16 domain protein
YP_002356589.1	KEGG: shw:Sputw3181_0683 hypothetical protein
YP_002356590.1	PFAM: fatty acid hydroxylase; KEGG: aav:Aave_2098 sterol desaturase
YP_002356591.1	PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: son:SO_4017 Slt family transglycosylase
YP_002356592.1	PFAM: tyrosine protein kinase; leucine-rich repeat protein; SMART: serine/threonine protein kinase; leucine-rich repeat-containing protein typical subtype; Protein kinase ATP binding, conserved site; KEGG: son:SO_4016 hypothetical protein
YP_002356593.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO_4015 hypothetical protein
YP_002356594.1	PFAM: acriflavin resistance protein; KEGG: son:SO_4014 AcrB/AcrD/AcrF family protein
YP_002356595.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: she:Shewmr4_3412 Sel1 domain-containing protein
YP_002356596.1	PFAM: peptidase domain protein; Peptidase M9A collagenase domain protein; Peptidase M9 domain; KEGG: son:SO_0639 collagenase family protein
YP_002356597.1	TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: shw:Sputw3181_0689 alcohol dehydrogenase, zinc-binding domain protein
YP_002356598.1	KEGG: shw:Sputw3181_0690 hypothetical protein
YP_002356599.1	PFAM: Aldose 1-epimerase; KEGG: shw:Sputw3181_0691 aldose 1-epimerase
YP_002356600.1	TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: spc:Sputcn32_3249 galactokinase
YP_002356601.1	PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: shw:Sputw3181_0693 sodium/hydrogen exchanger
YP_002356602.1	two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm
YP_002356603.1	PFAM: CutA1 divalent ion tolerance protein; KEGG: shw:Sputw3181_0695 CutA1 divalent ion tolerance protein
YP_002356604.1	PFAM: FxsA cytoplasmic membrane protein; KEGG: shm:Shewmr7_0548 FxsA cytoplasmic membrane protein
YP_002356605.1	KEGG: saz:Sama_3127 hypothetical protein
YP_002356606.1	PFAM: acriflavin resistance protein; KEGG: shw:Sputw3181_3474 acriflavin resistance protein
YP_002356607.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: spc:Sputcn32_0697 RND family efflux transporter MFP subunit
YP_002356608.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spc:Sputcn32_0698 LysR family transcriptional regulator
YP_002356609.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: shn:Shewana3_3569 MATE efflux family protein
YP_002356610.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_002356611.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_002356612.1	PFAM: helix-turn-helix domain protein; KEGG: son:SO_0705 Cro/CI family transcriptional regulator
YP_002356613.1	TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: son:SO_0706 hypothetical protein
YP_002356614.1	KEGG: son:SO_0718 hypothetical protein
YP_002356615.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: sfr:Sfri_3646 carboxymuconolactone decarboxylase
YP_002356616.1	KEGG: son:SO_0721 hypothetical protein
YP_002356617.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shn:Shewana3_3547 ABC transporter related
YP_002356619.1	KEGG: xcv:XCV3148 putative aminopeptidase precursor
YP_002356620.1	KEGG: spc:Sputcn32_0689 thioredoxin domain-containing protein
YP_002356622.1	PFAM: Cold-shock protein DNA-binding; Excalibur domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein; KEGG: she:Shewmr4_3373 cold-shock DNA-binding protein family protein
YP_002356623.1	PFAM: transcriptional regulator PadR family protein; KEGG: spc:Sputcn32_0690 PadR-like family transcriptional regulator
YP_002356624.1	KEGG: son:SO_0735 hypothetical protein
YP_002356625.1	KEGG: shn:Shewana3_3543 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002356626.1	KEGG: son:SO_0736 hypothetical protein
YP_002356627.1	PFAM: Alkaline phosphatase; KEGG: shn:Shewana3_3540 peptidoglycan glycosyltransferase
YP_002356628.1	PFAM: Alkaline phosphatase; KEGG: shm:Shewmr7_0584 alkaline phosphatase
YP_002356629.1	KEGG: shn:Shewana3_3538 hypothetical protein
YP_002356630.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: shw:Sputw3181_3477 transcriptional regulator, AraC family
YP_002356631.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: spc:Sputcn32_0694 lysine exporter protein LysE/YggA
YP_002356632.1	KEGG: shw:Sputw3181_3475 hypothetical protein
YP_002356633.1	KEGG: GE19159 gene product from transcript GE19159-RA
YP_002356635.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: shn:Shewana3_0659 diguanylate cyclase/phosphodiesterase with GAF sensor
YP_002356636.1	KEGG: shm:Shewmr7_3361 hypothetical protein
YP_002356637.1	KEGG: shn:Shewana3_0661 hypothetical protein
YP_002356638.1	KEGG: shn:Shewana3_0662 hypothetical protein
YP_002356639.1	PFAM: protein of unknown function RIO1; KEGG: shw:Sputw3181_3467 protein of unknown function RIO1
YP_002356640.1	KEGG: shw:Sputw3181_3466 transposase IS3/IS911 family protein
YP_002356642.1	PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: son:SO_3969 OmpA family protein
YP_002356643.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: shw:Sputw3181_3464 hypothetical protein
YP_002356644.1	TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO_3966 magnesium transporter
YP_002356645.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: shw:Sputw3181_3462 phosphotransferase system, phosphocarrier protein HPr
YP_002356646.1	PFAM: conserved hypothetical protein; KEGG: spc:Sputcn32_0712 hypothetical protein
YP_002356647.1	TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: shw:Sputw3181_3460 PTS IIA-like nitrogen-regulatory protein PtsN
YP_002356648.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shn:Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P
YP_002356649.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_002356650.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shn:Shewana3_0673 ABC transporter related
YP_002356651.1	TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: shn:Shewana3_0674 OstA family protein
YP_002356652.1	PFAM: protein of unknown function DUF1239; KEGG: spc:Sputcn32_0718 hypothetical protein
YP_002356653.1	forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis
YP_002356654.1	KEGG: she:Shewmr4_0678 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS)
YP_002356655.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_3452 ABC transporter related
YP_002356656.1	PFAM: protein of unknown function DUF140; KEGG: shn:Shewana3_0679 hypothetical protein
YP_002356657.1	PFAM: Mammalian cell entry related domain protein; KEGG: shw:Sputw3181_3450 mammalian cell entry related domain protein
YP_002356658.1	PFAM: toluene tolerance family protein; KEGG: shw:Sputw3181_3449 toluene tolerance family protein
YP_002356659.1	KEGG: shm:Shewmr7_3339 SpoIIAA family protein
YP_002356660.1	PFAM: BolA family protein; KEGG: shw:Sputw3181_3447 BolA family protein
YP_002356661.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_002356662.1	KEGG: shw:Sputw3181_3434 periplasmic serine protease DegS; TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein
YP_002356663.1	KEGG: shn:Shewana3_0690 peptidase Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein
YP_002356664.1	PFAM: AFG1-family ATPase; KEGG: she:Shewmr4_3270 AFG1 family ATPase
YP_002356665.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_002356666.1	forms a direct contact with the tRNA during translation
YP_002356667.1	KEGG: shw:Sputw3181_3429 hypothetical protein
YP_002356668.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_002356669.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: spc:Sputcn32_0748 Sel1 domain-containing protein
YP_002356670.1	KEGG: shw:Sputw3181_3426 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein
YP_002356671.1	Specifically methylates the ribose of guanosine 2251 in 23S rRNA
YP_002356672.1	PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_3262 major facilitator transporter
YP_002356673.1	PFAM: protein of unknown function DUF481; KEGG: shn:Shewana3_0700 hypothetical protein
YP_002356674.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_002356675.1	binds single-stranded DNA at the primosome assembly site
YP_002356676.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_002356677.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_002356678.1	KEGG: shm:Shewmr7_0691 Dipeptidyl-peptidase 7. Serine peptidase. MEROPS family S46
YP_002356679.1	KEGG: son:SO_3917 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase
YP_002356680.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_002356681.1	PFAM: CheC domain protein; KEGG: shn:Shewana3_0715 putative chemotaxis protein CheX
YP_002356682.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shn:Shewana3_0716 TonB-dependent siderophore receptor
YP_002356683.1	PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: shn:Shewana3_0717 putative hydroxylase
YP_002356684.1	KEGG: son:SO_0147 hypothetical protein
YP_002356685.1	KEGG: mmr:Mmar10_0873 TonB family protein
YP_002356688.1	PFAM: Protein of unknown function DUF1778; KEGG: shw:Sputw3181_3933 hypothetical protein
YP_002356689.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_3932 hypothetical protein
YP_002356693.1	KEGG: sdn:Sden_3275 GP46
YP_002356694.1	KEGG: sfr:Sfri_1641 hypothetical protein
YP_002356695.1	KEGG: sdn:Sden_3277 hypothetical protein
YP_002356696.1	KEGG: sdn:Sden_3276 hypothetical protein
YP_002356697.1	KEGG: shw:Sputw3181_2519 hypothetical protein
YP_002356698.1	KEGG: son:SO_3000 hypothetical protein
YP_002356699.1	KEGG: shw:Sputw3181_2517 hypothetical protein
YP_002356700.1	KEGG: sdn:Sden_3274 hypothetical protein
YP_002356701.1	KEGG: sdn:Sden_3273 hypothetical protein
YP_002356702.1	KEGG: sdn:Sden_3272 hypothetical protein
YP_002356703.1	KEGG: pfo:Pfl01_3820 hypothetical protein
YP_002356705.1	SMART: HNH nuclease; KEGG: son:SO_2194 OmpA family protein
YP_002356707.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002356708.1	PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: sdn:Sden_3268 transciptional regulator
YP_002356709.1	KEGG: sdn:Sden_3267 hypothetical protein
YP_002356710.1	KEGG: sdn:Sden_3266 hypothetical protein
YP_002356711.1	KEGG: ppg:PputGB1_3439 putative transcriptional regulator
YP_002356712.1	PFAM: replication P family protein; KEGG: sdn:Sden_3262 replication P
YP_002356713.1	PFAM: integrase family protein; KEGG: sdn:Sden_3261 phage integrase
YP_002356714.1	PFAM: helix-turn-helix domain protein; KEGG: sdn:Sden_3260 transciptional regulator
YP_002356715.1	KEGG: sdn:Sden_3259 hypothetical protein
YP_002356716.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_002356717.1	PFAM: glycoside hydrolase family 24; KEGG: son:SO_0659 lysozyme, putative
YP_002356718.1	KEGG: son:SO_0660 hypothetical protein
YP_002356719.1	KEGG: son:SO_2971 hypothetical protein
YP_002356720.1	PFAM: DNA packaging Nu1; KEGG: sfr:Sfri_1674 phage DNA packaging Nu1
YP_002356721.1	PFAM: terminase GpA; KEGG: sdn:Sden_3252 phage terminase GpA
YP_002356722.1	KEGG: sdn:Sden_3251 hypothetical protein
YP_002356723.1	TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: sdn:Sden_3250 phage portal protein, lambda
YP_002356724.1	PFAM: peptidase S14 ClpP; KEGG: sdn:Sden_3249 peptidase S14, ClpP
YP_002356725.1	KEGG: sdn:Sden_3248 gifsy-2 prophage; putative RecA/RADA recombinase
YP_002356726.1	KEGG: sdn:Sden_3247 hypothetical protein
YP_002356727.1	KEGG: sdn:Sden_3246 hypothetical protein
YP_002356728.1	KEGG: sdn:Sden_3245 hypothetical protein
YP_002356729.1	KEGG: sfr:Sfri_1683 hypothetical protein
YP_002356730.1	TIGRFAM: phage tape measure protein; KEGG: sfr:Sfri_1684 phage tape measure protein
YP_002356731.1	KEGG: sfr:Sfri_1685 hypothetical protein
YP_002356732.1	KEGG: son:SO_0682 hypothetical protein
YP_002356733.1	KEGG: son:SO_0683 hypothetical protein
YP_002356734.1	KEGG: son:SO_0687 hypothetical protein
YP_002356735.1	KEGG: sdn:Sden_3238 hypothetical protein
YP_002356736.1	KEGG: sdn:Sden_3237 hypothetical protein
YP_002356737.1	KEGG: apa:APP7_0548 hypothetical protein
YP_002356738.1	KEGG: afe:Lferr_0132 hypothetical protein
YP_002356739.1	PFAM: integrase family protein; KEGG: sdn:Sden_3233 phage integrase
YP_002356740.1	TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: shw:Sputw3181_3414 tRNA-dihydrouridine synthase A
YP_002356741.1	KEGG: shn:Shewana3_0719 hypothetical protein
YP_002356742.1	PFAM: PspC domain protein; KEGG: shn:Shewana3_0720 phage shock protein C, PspC
YP_002356743.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shn:Shewana3_0721 enoyl-CoA hydratase
YP_002356744.1	PFAM: protein of unknown function DUF461; KEGG: shw:Sputw3181_3410 protein of unknown function DUF461
YP_002356745.1	KEGG: shn:Shewana3_0723 hypothetical protein
YP_002356746.1	KEGG: shw:Sputw3181_3408 hypothetical protein
YP_002356747.1	trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell
YP_002356748.1	PFAM: NUDIX hydrolase; KEGG: son:SO_3903 MutT/NUDIX family protein
YP_002356749.1	PFAM: protein of unknown function DUF1249; KEGG: shw:Sputw3181_3405 protein of unknown function DUF1249
YP_002356750.1	PFAM: metallophosphoesterase; Calcineurin phosphoesterase domain protein; KEGG: shw:Sputw3181_3404 calcineurin phosphoesterase C-terminal domain protein
YP_002356751.1	PFAM: protein of unknown function UPF0227; KEGG: she:Shewmr4_3232 hypothetical protein
YP_002356752.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_002356753.1	KEGG: shm:Shewmr7_0759 L-sorbosone dehydrogenase, putative
YP_002356754.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_002356755.1	PFAM: porin Gram-negative type; KEGG: shm:Shewmr7_0761 porin, gram-negative type
YP_002356756.1	PFAM: porin Gram-negative type; KEGG: shn:Shewana3_0734 porin
YP_002356757.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: she:Shewmr4_3226 UBA/ThiF-type NAD/FAD binding protein
YP_002356758.1	PFAM: ATP-binding region ATPase domain protein; KEGG: shm:Shewmr7_0764 periplasmic sensor signal transduction histidine kinase
YP_002356759.1	KEGG: shw:Sputw3181_3397 hypothetical protein
YP_002356760.1	KEGG: shw:Sputw3181_3398 hypothetical protein
YP_002356761.1	KEGG: son:SO_3890 methyl-accepting chemotaxis protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; SMART: histidine kinase HAMP region domain protein
YP_002356762.1	Part of the ABC transporter complex modABC involved in molybdenum import
YP_002356763.1	part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE
YP_002356764.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: shm:Shewmr7_0769 molybdenum ABC transporter, periplasmic molybdate-binding protein
YP_002356765.1	TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: shn:Shewana3_0744 ModE family transcriptional regulator
YP_002356766.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO_0820 HlyD family secretion protein
YP_002356767.1	PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: shn:Shewana3_3455 ABC transporter related
YP_002356768.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: shw:Sputw3181_0774 RND efflux system, outer membrane lipoprotein, NodT family
YP_002356769.1	PFAM: peptidase M50; KEGG: spc:Sputcn32_3167 peptidase M50
YP_002356770.1	KEGG: shw:Sputw3181_0777 hypothetical protein
YP_002356771.1	PFAM: protein of unknown function DUF342; KEGG: shw:Sputw3181_0778 protein of unknown function DUF342
YP_002356772.1	PFAM: methyltransferase small; Methyltransferase small domain protein; KEGG: shw:Sputw3181_0779 rRNA (guanine-N(2)-)-methyltransferase
YP_002356773.1	PFAM: Alkaline phosphatase; KEGG: shw:Sputw3181_0780 alkaline phosphatase
YP_002356774.1	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_002356775.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_002356776.1	PFAM: Endonuclease I; KEGG: shw:Sputw3181_0783 deoxyribonuclease I
YP_002356777.1	PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: shw:Sputw3181_0784 protein of unknown function DUF335, SprT
YP_002356778.1	KEGG: shw:Sputw3181_0785 hypothetical protein
YP_002356779.1	PFAM: penicillin-binding protein transpeptidase; KEGG: shw:Sputw3181_0786 beta-lactamase
YP_002356780.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_0787 transcriptional regulator, LysR family
YP_002356781.1	PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: shw:Sputw3181_0788 carbamoyl-phosphate synthase L chain, ATP-binding
YP_002356782.1	PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_1779 transposase IS116/IS110/IS902 family protein
YP_002356783.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; KEGG: son:SO_0841 GGDEF domain-containing protein
YP_002356784.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_002356785.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_0790 transcriptional regulator, LysR family
YP_002356786.1	KEGG: she:Shewmr4_0700 hypothetical protein
YP_002356787.1	PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: shm:Shewmr7_3321 periplasmic nitrate reductase subunit NapB
YP_002356788.1	periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC
YP_002356789.1	PFAM: NapD family protein; KEGG: shw:Sputw3181_0796 NapD family protein
YP_002356790.1	KEGG: shn:Shewana3_3428 hypothetical protein
YP_002356791.1	KEGG: she:Shewmr4_0707 prepilin-type cleavage/methylation-like protein
YP_002356792.1	KEGG: shn:Shewana3_3426 prepilin-type cleavage/methylation-like protein
YP_002356793.1	KEGG: shm:Shewmr7_3313 methylation site containing protein
YP_002356794.1	KEGG: she:Shewmr4_0710 methylation site containing protein
YP_002356795.1	KEGG: shw:Sputw3181_0797 hypothetical protein
YP_002356796.1	PFAM: protein of unknown function DUF214; KEGG: shw:Sputw3181_0798 protein of unknown function DUF214
YP_002356797.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_0799 ABC transporter related
YP_002356798.1	TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: shw:Sputw3181_0800 amino acid carrier protein
YP_002356799.1	KEGG: shw:Sputw3181_0801 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002356800.1	PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: shw:Sputw3181_0802 response regulator receiver modulated metal dependent phosphohydrolase
YP_002356801.1	TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: spc:Sputcn32_3140 glycine cleavage T protein (aminomethyl transferase)
YP_002356802.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_002356803.1	KEGG: she:Shewmr4_0719 hypothetical protein
YP_002356804.1	PFAM: regulatory protein LuxR; KEGG: shw:Sputw3181_0806 response regulator receiver protein
YP_002356805.1	PFAM: Curlin associated repeat protein; KEGG: shw:Sputw3181_0807 curlin associated repeat protein
YP_002356806.1	PFAM: Curlin associated repeat protein; KEGG: shw:Sputw3181_0808 curlin associated repeat protein
YP_002356807.1	KEGG: shw:Sputw3181_0809 hypothetical protein
YP_002356808.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_002356809.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_002356810.1	KEGG: shw:Sputw3181_0812 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK
YP_002356811.1	KEGG: shw:Sputw3181_0813 poly(A) polymerase; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region
YP_002356812.1	PFAM: glutamyl-tRNA synthetase class Ic; KEGG: spc:Sputcn32_3129 glutamate--tRNA ligase
YP_002356813.1	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: son:SO_0874 DnaK suppressor protein
YP_002356814.1	Regulatory factor involved in maltose metabolism
YP_002356815.1	catalyzes the removal of an N-terminal amino acid from a peptide or arylamide
YP_002356816.1	PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO_0877 acetyltransferase
YP_002356817.1	PFAM: phosphoribulokinase/uridine kinase; KEGG: shn:Shewana3_3400 phosphoribulokinase/uridine kinase
YP_002356818.1	KEGG: shw:Sputw3181_0820 protein of unknown function UPF0270
YP_002356819.1	KEGG: spc:Sputcn32_3122 alpha/beta hydrolase fold
YP_002356820.1	KEGG: shn:Shewana3_3397 hypothetical protein
YP_002356821.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: shn:Shewana3_3396 glucose-methanol-choline oxidoreductase
YP_002356822.1	KEGG: amc:MADE_02219 predicted transcription negative regulator
YP_002356823.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sfr:Sfri_3600 short-chain dehydrogenase/reductase SDR
YP_002356824.1	PFAM: helix-turn-helix HxlR type; KEGG: sfr:Sfri_3601 transcriptional regulator, HxlR family protein
YP_002356825.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: shw:Sputw3181_0824 glutathione-dependent formaldehyde-activating, GFA
YP_002356826.1	PFAM: conserved hypothetical protein; KEGG: shn:Shewana3_3394 hypothetical protein
YP_002356827.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spc:Sputcn32_3117 ABC transporter related
YP_002356829.1	PFAM: conserved hypothetical protein; KEGG: shw:Sputw3181_0827 hypothetical protein
YP_002356830.1	KEGG: ote:Oter_1132 hypothetical protein
YP_002356831.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mmw:Mmwyl1_1518 short chain dehydrogenase
YP_002356832.1	TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: mmw:Mmwyl1_1519 methylated-DNA--protein-cysteine methyltransferase
YP_002356833.1	PFAM: Pirin domain protein; KEGG: shw:Sputw3181_0833 pirin domain protein domain protein
YP_002356834.1	exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA
YP_002356835.1	KEGG: shn:Shewana3_3302 ISPsy11, transposase OrfA
YP_002356836.1	KEGG: lpn:lpg0198 hypothetical protein
YP_002356837.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shw:Sputw3181_0836 DEAD/DEAH box helicase domain protein
YP_002356838.1	KEGG: shm:Shewmr7_0839 hypothetical protein
YP_002356839.1	KEGG: son:SO_3781 hypothetical protein
YP_002356840.1	in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c
YP_002356841.1	in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c
YP_002356842.1	TIGRFAM: adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: shw:Sputw3181_0840 putative adenylyl cyclase CyaB
YP_002356843.1	KEGG: shn:Shewana3_0816 DNA binding domain-containing protein
YP_002356844.1	PFAM: protein of unknown function DUF599; KEGG: son:SO_3776 hypothetical protein
YP_002356845.1	proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain
YP_002356846.1	PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: spc:Sputcn32_3098 SH3 type 3 domain-containing protein
YP_002356847.1	PFAM: phosphate transporter; KEGG: shw:Sputw3181_0847 phosphate transporter
YP_002356848.1	PFAM: protein of unknown function DUF47; KEGG: shw:Sputw3181_0848 protein of unknown function DUF47
YP_002356849.1	PFAM: adenylate cyclase; KEGG: shw:Sputw3181_0849 adenylate cyclase
YP_002356850.1	PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: shn:Shewana3_0824 ion transport 2 domain-containing protein
YP_002356851.1	KEGG: shw:Sputw3181_0851 hypothetical protein
YP_002356852.1	KEGG: shn:Shewana3_0826 hypothetical protein
YP_002356853.1	PFAM: PspA/IM30 family protein; KEGG: shw:Sputw3181_0853 phage shock protein A, PspA
YP_002356854.1	KEGG: son:SO_3764 hypothetical protein
YP_002356855.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_002356856.1	PFAM: protein of unknown function DUF350; KEGG: spc:Sputcn32_3088 hypothetical protein
YP_002356857.1	KEGG: spc:Sputcn32_3087 hypothetical protein
YP_002356858.1	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme
YP_002356859.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: shw:Sputw3181_0859 diguanylate cyclase
YP_002356860.1	PFAM: protein of unknown function DUF897; KEGG: shw:Sputw3181_0860 protein of unknown function DUF897
YP_002356861.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_0861 transcriptional regulator, LysR family
YP_002356862.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shw:Sputw3181_1958 methyl-accepting chemotaxis sensory transducer
YP_002356863.1	PFAM: AFG1-family ATPase; KEGG: shw:Sputw3181_0869 AFG1-family ATPase
YP_002356864.1	PFAM: protein of unknown function DUF583; KEGG: she:Shewmr4_3101 hypothetical protein
YP_002356865.1	PFAM: phosphate-selective porin O and P; KEGG: shm:Shewmr7_0872 phosphate-selective porin O and P
YP_002356866.1	PFAM: conserved hypothetical protein; KEGG: shm:Shewmr7_0873 uncharacterized protein UPF0065
YP_002356867.1	KEGG: she:Shewmr4_3098 putative tricarboxylic transport membrane protein
YP_002356868.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: she:Shewmr4_3097 hypothetical protein
YP_002356869.1	PFAM: ATP-binding region ATPase domain protein; KEGG: she:Shewmr4_3096 signal transduction histidine kinase regulating citrate/malate metabolism
YP_002356871.1	contains unknown domain; PFAM: response regulator receiver; KEGG: she:Shewmr4_3095 response regulator receiver/unknown domain-containing protein
YP_002356872.1	PFAM: peptidase M16 domain protein; KEGG: shm:Shewmr7_0878 peptidase M16 domain protein
YP_002356873.1	PFAM: peptidase M16 domain protein; KEGG: shn:Shewana3_0842 peptidase M16 domain-containing protein
YP_002356874.1	KEGG: shn:Shewana3_0843 hypothetical protein
YP_002356875.1	PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: shw:Sputw3181_0871 ErfK/YbiS/YcfS/YnhG family protein
YP_002356876.1	the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli
YP_002356877.1	TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: shm:Shewmr7_0885 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase
YP_002356878.1	catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose
YP_002356879.1	KEGG: spc:Sputcn32_3068 hypothetical protein
YP_002356880.1	PFAM: regulatory protein TetR; KEGG: shw:Sputw3181_0878 transcriptional regulator, TetR family
YP_002356881.1	KEGG: swd:Swoo_0773 hypothetical protein
YP_002356882.1	PFAM: Rhomboid family protein; KEGG: swd:Swoo_0774 rhomboid family protein
YP_002356883.1	catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme
YP_002356884.1	forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm
YP_002356885.1	TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: spc:Sputcn32_3064 sulfite reductase (NADPH) flavoprotein, alpha chain
YP_002356886.1	hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide
YP_002356887.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_002356889.1	glycosyltransferase; polymerizes glycan strands in the peptidoglycan
YP_002356890.1	SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: son:SO_3733.1 proline hydroxylase
YP_002356891.1	KEGG: shw:Sputw3181_0885 hypothetical protein
YP_002356892.1	KEGG: she:Shewmr4_3075 hypothetical protein
YP_002356893.1	PFAM: phospholipase A1; KEGG: shm:Shewmr7_0898 phospholipase A(1)
YP_002356894.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: spc:Sputcn32_3044 uroporphyrin-III C-methyltransferase
YP_002356895.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_002356896.1	may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ
YP_002356897.1	PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: shw:Sputw3181_0904 TrkA-C domain protein
YP_002356898.1	converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis
YP_002356899.1	PFAM: ATP-binding region ATPase domain protein; KEGG: shn:Shewana3_0867 ATPase domain-containing protein
YP_002356900.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: shn:Shewana3_0868 diguanylate cyclase/phosphodiesterase
YP_002356901.1	KEGG: spc:Sputcn32_3039 hypothetical protein
YP_002356902.1	PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_3067 major facilitator transporter
YP_002356903.1	KEGG: shn:Shewana3_0871 protoporphyrinogen oxidase
YP_002356904.1	KEGG: son:SO_3719 hypothetical protein
YP_002356905.1	PFAM: DSBA oxidoreductase; KEGG: shn:Shewana3_0874 DsbA oxidoreductase
YP_002356906.1	PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO_3716 DnaJ domain-containing protein
YP_002356907.1	catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive
YP_002356908.1	KEGG: shn:Shewana3_3935 hypothetical protein
YP_002356909.1	KEGG: amr:AM1_4523 hypothetical protein
YP_002356910.1	KEGG: pol:Bpro_5210 hypothetical protein
YP_002356911.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_0916 ABC transporter related
YP_002356912.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shw:Sputw3181_0917 polar amino acid ABC transporter, inner membrane subunit
YP_002356913.1	PFAM: extracellular solute-binding protein family 3; KEGG: shw:Sputw3181_0918 extracellular solute-binding protein, family 3
YP_002356914.1	KEGG: son:SO_1045 hypothetical protein
YP_002356915.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shm:Shewmr7_0921 transcriptional regulator, LysR family
YP_002356916.1	PFAM: LrgA family protein; KEGG: shn:Shewana3_0885 LrgA family protein
YP_002356917.1	PFAM: LrgB family protein; KEGG: shw:Sputw3181_0921 LrgB family protein
YP_002356918.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shn:Shewana3_0887 GCN5-related N-acetyltransferase
YP_002356919.1	specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7
YP_002356920.1	PFAM: sodium/calcium exchanger membrane region; KEGG: shw:Sputw3181_3262 sodium/calcium exchanger membrane region
YP_002356921.1	PFAM: MORN variant repeat protein; KEGG: shm:Shewmr7_3193 hypothetical protein
YP_002356922.1	PFAM: MORN variant repeat protein; KEGG: shn:Shewana3_3288 MORN repeat-containing protein
YP_002356923.1	KEGG: son:SO_1004 hypothetical protein
YP_002356924.1	PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: swd:Swoo_2675 Na+ dependent nucleoside transporter
YP_002356925.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: swd:Swoo_2676 LysR family transcriptional regulator
YP_002356926.1	PFAM: dienelactone hydrolase; KEGG: she:Shewmr4_0833 twin-arginine translocation pathway signal
YP_002356927.1	PFAM: cytochrome c class I; KEGG: sfr:Sfri_0858 cytochrome c, class I
YP_002356928.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: sfr:Sfri_0859 (2Fe-2S)-binding domain protein
YP_002356929.1	PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: sfr:Sfri_0860 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
YP_002356931.1	KEGG: shm:Shewmr7_3187 hypothetical protein
YP_002356932.1	PFAM: transposase IS3/IS911 family protein; KEGG: son:SO_4581 ISSod1, transposase OrfA
YP_002356933.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002356934.1	one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity
YP_002356935.1	PFAM: Phosphoglycerate mutase; KEGG: shw:Sputw3181_0983 phosphoglycerate mutase
YP_002356936.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spc:Sputcn32_2963 ABC transporter related
YP_002356937.1	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole
YP_002356938.1	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole
YP_002356939.1	PFAM: cobalbumin biosynthesis protein; KEGG: shw:Sputw3181_0988 cobalbumin biosynthesis enzyme
YP_002356940.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_002356941.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_002356942.1	KEGG: shw:Sputw3181_0994 hypothetical protein
YP_002356943.1	PFAM: periplasmic binding protein; KEGG: spc:Sputcn32_2947 periplasmic binding protein
YP_002356944.1	PFAM: Aldehyde Dehydrogenase; KEGG: shw:Sputw3181_0996 aldehyde dehydrogenase
YP_002356945.1	forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone
YP_002356946.1	KEGG: shn:Shewana3_3271 cell division protein ZipA
YP_002356947.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shn:Shewana3_3270 GCN5-related N-acetyltransferase
YP_002356948.1	KEGG: shw:Sputw3181_0945 hypothetical protein
YP_002356949.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: shw:Sputw3181_0946 putative transcriptional regulator, GntR family
YP_002356950.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_0947 GCN5-related N-acetyltransferase
YP_002356951.1	KEGG: cak:Caul_5230 hypothetical protein
YP_002356952.1	KEGG: she:Shewmr4_0858 hypothetical protein
YP_002356953.1	KEGG: shw:Sputw3181_0952 hypothetical protein
YP_002356954.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_002356955.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: shw:Sputw3181_0954 efflux transporter, RND family, MFP subunit
YP_002356956.1	KEGG: shw:Sputw3181_0955 hypothetical protein
YP_002356957.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spc:Sputcn32_2991 ABC transporter related
YP_002356958.1	PFAM: protein of unknown function DUF214; KEGG: spc:Sputcn32_2990 hypothetical protein
YP_002356959.1	PFAM: protein of unknown function DUF214; KEGG: shw:Sputw3181_0958 protein of unknown function DUF214
YP_002356960.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: shw:Sputw3181_0959 two component, sigma54 specific, transcriptional regulator, fis family
YP_002356961.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: spc:Sputcn32_2987 integral membrane sensor signal transduction histidine kinase
YP_002356962.1	KEGG: shw:Sputw3181_0961 curli production assembly/transport component CsgE, putative
YP_002356963.1	KEGG: shw:Sputw3181_0962 curli production assembly/transport component CsgF, putative
YP_002356964.1	PFAM: Curli production assembly/transport component CsgG; KEGG: shw:Sputw3181_0963 curli production assembly/transport component CsgG
YP_002356965.1	PFAM: regulatory protein TetR; KEGG: shw:Sputw3181_0964 transcriptional regulator, TetR family
YP_002356966.1	PFAM: Aldehyde Dehydrogenase; KEGG: spc:Sputcn32_2982 aldehyde dehydrogenase
YP_002356967.1	KEGG: shw:Sputw3181_0966 hypothetical protein
YP_002356968.1	PFAM: UspA domain protein; KEGG: shm:Shewmr7_3148 UspA domain protein
YP_002356969.1	PFAM: UspA domain protein; KEGG: son:SO_3680 universal stress protein
YP_002356970.1	PFAM: extracellular solute-binding protein family 3; KEGG: shw:Sputw3181_0968 extracellular solute-binding protein, family 3
YP_002356971.1	PFAM: protein of unknown function DUF924; KEGG: shn:Shewana3_3246 hypothetical protein
YP_002356972.1	KEGG: shw:Sputw3181_0969 hypothetical protein
YP_002356973.1	KEGG: wsu:WS1548 carbon starvation protein-membrane protein
YP_002356974.1	PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: shn:Shewana3_0953 xanthine/uracil/vitamin C permease
YP_002356975.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_002356976.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_002356977.1	KEGG: she:Shewmr4_0954 hypothetical protein
YP_002356978.1	TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: shw:Sputw3181_0974 YbaK/EbsC protein
YP_002356979.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: shw:Sputw3181_0975 protein of unknown function DUF6, transmembrane
YP_002356980.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_002356981.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_002356982.1	KEGG: hypothetical protein
YP_002356983.1	KEGG: sfr:Sfri_3652 hypothetical protein
YP_002356984.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: spc:Sputcn32_2944 DEAD/DEAH box helicase domain-containing protein
YP_002356985.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shn:Shewana3_0963 GCN5-related N-acetyltransferase
YP_002356986.1	PFAM: peptidase M48 Ste24p; KEGG: shw:Sputw3181_0999 peptidase M48, Ste24p
YP_002356987.1	PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: shw:Sputw3181_1000 peptidylprolyl isomerase, FKBP-type
YP_002356988.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_002356989.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_002356990.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_002356991.1	PFAM: pseudouridine synthase; KEGG: shw:Sputw3181_1004 pseudouridine synthase
YP_002356992.1	PFAM: extracellular solute-binding protein family 3; KEGG: spc:Sputcn32_2937 hypothetical protein
YP_002356993.1	PFAM: chemotaxis sensory transducer; KEGG: son:SO_1144 methyl-accepting chemotaxis protein
YP_002356994.1	TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: shw:Sputw3181_1007 magnesium transporter
YP_002356995.1	KEGG: shw:Sputw3181_1008 hypothetical protein
YP_002356997.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: spc:Sputcn32_2933 endonuclease/exonuclease/phosphatase
YP_002356998.1	PFAM: hydroxymethylglutaryl-coenzyme A reductase; KEGG: shn:Shewana3_0974 hypothetical protein
YP_002356999.1	PFAM: protein of unknown function DUF692; KEGG: shn:Shewana3_0975 hypothetical protein
YP_002357000.1	KEGG: shm:Shewmr7_1010 putative lipoprotein
YP_002357001.1	SMART: PUA domain containing protein; KEGG: shw:Sputw3181_1012 PUA domain containing protein
YP_002357002.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_002357003.1	PFAM: protein of unknown function DUF808; KEGG: spc:Sputcn32_2930 hypothetical protein
YP_002357004.1	PFAM: 3'-5' exonuclease; KEGG: shw:Sputw3181_1015 3'-5' exonuclease
YP_002357006.1	KEGG: shw:Sputw3181_1016 hypothetical protein
YP_002357007.1	PFAM: SEC-C motif domain protein; KEGG: spc:Sputcn32_2927 SecC motif-containing protein
YP_002357008.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: amc:MADE_00241 TonB-dependent receptor
YP_002357009.1	PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: amc:MADE_00239 beta-galactosidase
YP_002357010.1	catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P
YP_002357011.1	catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism
YP_002357012.1	TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pha:PSHAa1768 sodium/hexose cotransport protein
YP_002357013.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: spe:Spro_1161 UDP-glucose 4-epimerase
YP_002357014.1	KEGG: amc:MADE_00237 membrane of secreted protein
YP_002357015.1	KEGG: pat:Patl_2680 major facilitator transporter
YP_002357016.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sde:Sde_0686 transcriptional regulator, LacI family
YP_002357017.1	KEGG: shw:Sputw3181_1021 hypothetical protein
YP_002357018.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spc:Sputcn32_2881 TonB-dependent siderophore receptor
YP_002357019.1	KEGG: shw:Sputw3181_1023 protein of unknown function DUF1624
YP_002357020.1	PFAM: Ferritin Dps family protein; KEGG: shw:Sputw3181_1024 ferritin, Dps family protein
YP_002357021.1	KEGG: shw:Sputw3181_1025 hypothetical protein
YP_002357022.1	TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1048 SSU ribosomal protein S18P alanine acetyltransferase
YP_002357023.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_002357024.1	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein
YP_002357025.1	PFAM: protein of unknown function DUF493; KEGG: shw:Sputw3181_1029 hypothetical protein
YP_002357026.1	PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: shm:Shewmr7_1052 Penicillin-binding protein 6. Serine peptidase. MEROPS family S11
YP_002357027.1	TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: shw:Sputw3181_1031 rare lipoprotein A
YP_002357028.1	TIGRFAM: lytic murein transglycosylase B; KEGG: spc:Sputcn32_2871 lytic murein transglycosylase B
YP_002357029.1	TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: shm:Shewmr7_1055 rod shape-determining protein RodA
YP_002357030.1	KEGG: shn:Shewana3_0995 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain
YP_002357031.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_002357032.1	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: shw:Sputw3181_1036 iojap-like protein
YP_002357033.1	KEGG: spc:Sputcn32_2866 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase
YP_002357034.1	KEGG: spc:Sputcn32_2865 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta
YP_002357035.1	PFAM: Rare lipoprotein B; KEGG: shn:Shewana3_1000 rare lipoprotein B
YP_002357036.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_002357037.1	PFAM: protein of unknown function DUF1451; KEGG: shn:Shewana3_1002 hypothetical protein
YP_002357038.1	KEGG: shw:Sputw3181_1042 histidine kinase
YP_002357039.1	KEGG: spc:Sputcn32_2860 methylation site containing protein
YP_002357040.1	Transfers the fatty acyl group on membrane lipoproteins
YP_002357041.1	PFAM: CBS domain containing protein; transporter-associated region; KEGG: shw:Sputw3181_1046 CBS domain containing protein
YP_002357042.1	PFAM: protein of unknown function UPF0054; KEGG: she:Shewmr4_1002 putative metalloprotease
YP_002357043.1	PFAM: PhoH family protein; KEGG: shw:Sputw3181_1048 PhoH family protein
YP_002357044.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_002357045.1	KEGG: shm:Shewmr7_1070 hypothetical protein
YP_002357046.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: spc:Sputcn32_2854 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
YP_002357047.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_002357048.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_002357049.1	KEGG: son:SO_1187 hypothetical protein
YP_002357050.1	PFAM: PepSY-associated TM helix domain protein; KEGG: spc:Sputcn32_2850 PepSY-associated TM helix domain-containing protein
YP_002357051.1	KEGG: son:SO_1189 hypothetical protein
YP_002357052.1	KEGG: shn:Shewana3_1016 hypothetical protein
YP_002357053.1	TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: shw:Sputw3181_1057 transcription elongation factor GreA
YP_002357054.1	KEGG: spc:Sputcn32_2846 hypothetical protein
YP_002357055.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_002357056.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_002357057.1	PFAM: protein of unknown function UPF0044; KEGG: shw:Sputw3181_1061 protein of unknown function UPF0044
YP_002357058.1	Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit
YP_002357059.1	KEGG: spc:Sputcn32_2841 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_002357060.1	KEGG: shw:Sputw3181_1064 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS
YP_002357061.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_002357062.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_002357063.1	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: son:SO_1201 preprotein translocase subunit SecG
YP_002357064.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_002357065.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_002357066.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_002357067.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_002357068.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_002357069.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_002357070.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: shm:Shewmr7_1095 diguanylate cyclase/phosphodiesterase
YP_002357071.1	KEGG: shw:Sputw3181_1075 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein
YP_002357072.1	lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing
YP_002357073.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_002357074.1	KEGG: shw:Sputw3181_1185 hypothetical protein
YP_002357075.1	PFAM: TatD-related deoxyribonuclease; KEGG: shw:Sputw3181_1186 TatD-related deoxyribonuclease
YP_002357076.1	TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: she:Shewmr4_1035 nucleoside transporter
YP_002357077.1	PFAM: nucleoside-specific channel-forming protein Tsx; KEGG: spc:Sputcn32_2823 nucleoside-specific channel-forming protein, Tsx
YP_002357078.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_002357079.1	Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate
YP_002357080.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_002357081.1	catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate
YP_002357082.1	KEGG: shw:Sputw3181_1193 membrane protein
YP_002357083.1	KEGG: spc:Sputcn32_2817 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase
YP_002357084.1	KEGG: spc:Sputcn32_2816 alpha/beta hydrolase fold
YP_002357085.1	PFAM: type IV pilus assembly PilZ; KEGG: shw:Sputw3181_1196 type IV pilus assembly PilZ
YP_002357086.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_002357087.1	PFAM: type IV pilus assembly PilZ; KEGG: shw:Sputw3181_1198 type IV pilus assembly PilZ
YP_002357088.1	response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes
YP_002357089.1	periplasmic sensory protein associated with the TorRS two-component regulatory system
YP_002357090.1	TIGRFAM: TMAO reductase sytem sensor TorS; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: she:Shewmr4_1049 multi-sensor hybrid histidine kinase
YP_002357091.1	TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor
YP_002357092.1	TIGRFAM: trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: shm:Shewmr7_1116 trimethylamine-N-oxide reductase TorA
YP_002357093.1	TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: shm:Shewmr7_1117 trimethylamine-N-oxide reductase C-type cytochrome TorC
YP_002357094.1	TIGRFAM: trimethylamine N-oxide reductase system, TorE protein; PFAM: periplasmic nitrate reductase NapE; KEGG: shn:Shewana3_1057 periplasmic nitrate reductase NapE
YP_002357095.1	PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: shw:Sputw3181_1199 xanthine/uracil/vitamin C permease
YP_002357096.1	PFAM: CBS domain containing protein; KEGG: shw:Sputw3181_1200 CBS domain containing protein
YP_002357097.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: spc:Sputcn32_2810 phospholipid/glycerol acyltransferase
YP_002357098.1	PFAM: metallophosphoesterase; KEGG: spc:Sputcn32_2809 metallophosphoesterase
YP_002357099.1	KEGG: slo:Shew_2597 hypothetical protein
YP_002357100.1	PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: son:SO_2036 phage integrase family site specific recombinase
YP_002357101.1	PFAM: putative transposase; KEGG: shw:Sputw3181_1845 putative transposase
YP_002357102.1	KEGG: asa:ASA_4165 CgeB family protein
YP_002357104.1	PFAM: nucleoside recognition domain protein; KEGG: shn:Shewana3_1062 nucleoside recognition domain-containing protein
YP_002357105.1	KEGG: shw:Sputw3181_1205 hypothetical protein
YP_002357106.1	PFAM: peptidase U32; KEGG: shw:Sputw3181_1206 peptidase U32
YP_002357107.1	PFAM: peptidase U32; KEGG: shw:Sputw3181_1207 peptidase U32
YP_002357108.1	PFAM: Sterol-binding domain protein; KEGG: shw:Sputw3181_1208 sterol-binding domain protein
YP_002357109.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; peptidase domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: swd:Swoo_2373 peptidase S8 and S53 subtilisin kexin sedolisin
YP_002357110.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shm:Shewmr7_1135 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_002357111.1	PFAM: peptidase U32; KEGG: shw:Sputw3181_1210 peptidase U32
YP_002357112.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: shm:Shewmr7_1137 putative signal transduction protein
YP_002357113.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: spc:Sputcn32_2800 diguanylate cyclase/phosphodiesterase
YP_002357114.1	PFAM: thioesterase superfamily protein; KEGG: spc:Sputcn32_2799 thioesterase superfamily protein
YP_002357115.1	PFAM: response regulator receiver; CheW domain protein; KEGG: spc:Sputcn32_2798 putative CheW protein
YP_002357116.1	PFAM: adenylosuccinate synthetase; KEGG: shw:Sputw3181_1215 adenylosuccinate synthase
YP_002357117.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_1216 transcriptional regulator, LysR family
YP_002357118.1	PFAM: extracellular solute-binding protein family 3; KEGG: shw:Sputw3181_1217 extracellular solute-binding protein, family 3
YP_002357119.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002357120.1	PFAM: transmembrane pair domain protein; KEGG: vha:VIBHAR_01850 hypothetical protein
YP_002357121.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_0421 LysR family transcriptional regulator
YP_002357122.1	PFAM: regulatory protein TetR; KEGG: spc:Sputcn32_2793 TetR family transcriptional regulator
YP_002357123.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shw:Sputw3181_1220 efflux transporter, RND family, MFP subunit
YP_002357124.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: shw:Sputw3181_1221 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
YP_002357125.1	KEGG: she:Shewmr4_1075 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_002357127.1	KEGG: she:Shewmr4_1076 hypothetical protein
YP_002357128.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: she:Shewmr4_1077 diguanylate cyclase/phosphodiesterase
YP_002357129.1	KEGG: she:Shewmr4_1078 hypothetical protein
YP_002357130.1	PFAM: globin; KEGG: she:Shewmr4_1079 globin
YP_002357131.1	PFAM: protein of unknown function DUF88; KEGG: spc:Sputcn32_2790 hypothetical protein
YP_002357132.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: swd:Swoo_2093 AraC family transcriptional regulator
YP_002357133.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: swd:Swoo_2094 hypothetical protein
YP_002357134.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: spc:Sputcn32_2789 AraC family transcriptional regulator
YP_002357135.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: shw:Sputw3181_1224 drug resistance transporter, Bcr/CflA subfamily
YP_002357136.1	PFAM: acriflavin resistance protein; KEGG: shw:Sputw3181_1225 acriflavin resistance protein
YP_002357137.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shw:Sputw3181_1226 efflux transporter, RND family, MFP subunit
YP_002357138.1	PFAM: extracellular solute-binding protein family 3; KEGG: son:SO_3481 hypothetical protein
YP_002357139.1	PFAM: metallophosphoesterase; SMART: serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; KEGG: she:Shewmr4_1086 metallophosphoesterase
YP_002357140.1	KEGG: shw:Sputw3181_1227 ketosteroid isomerase-related protein
YP_002357141.1	KEGG: spc:Sputcn32_2784 putative protein-disulfide isomerase
YP_002357142.1	PFAM: beta-lactamase domain protein; KEGG: shw:Sputw3181_1229 beta-lactamase domain protein
YP_002357143.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_1230 transcriptional regulator, LysR family
YP_002357144.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_002357145.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_002357146.1	PFAM: ATP-cone domain protein; KEGG: shw:Sputw3181_1233 hypothetical protein
YP_002357147.1	KEGG: spc:Sputcn32_2778 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein
YP_002357148.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_002357149.1	TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: shm:Shewmr7_1164 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_002357150.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_002357151.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_002357152.1	KEGG: shw:Sputw3181_1239 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein
YP_002357153.1	PFAM: phosphatidylglycerophosphatase A; KEGG: spc:Sputcn32_2772 phosphatidylglycerophosphatase
YP_002357154.1	TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: spc:Sputcn32_2771 recombination and repair protein
YP_002357155.1	PFAM: Auxin Efflux Carrier; KEGG: shw:Sputw3181_1242 auxin efflux carrier
YP_002357156.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_1243 transcriptional regulator, LysR family
YP_002357157.1	KEGG: son:SO_3459 hypothetical protein
YP_002357158.1	PFAM: protein of unknown function DUF416; KEGG: shw:Sputw3181_1244 protein of unknown function DUF416
YP_002357159.1	part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system
YP_002357160.1	in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]
YP_002357161.1	KEGG: shw:Sputw3181_1247 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein
YP_002357162.1	PFAM: protein of unknown function DUF1568; KEGG: shm:Shewmr7_1178 protein of unknown function DUF1568
YP_002357163.1	KEGG: shw:Sputw3181_1248 hypothetical protein
YP_002357164.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002357165.1	catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate
YP_002357166.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_002357167.1	catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis
YP_002357168.1	functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era
YP_002357169.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_002357170.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_002357171.1	PFAM: Septum formation initiator; KEGG: spc:Sputcn32_2756 septum formation initiator
YP_002357172.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_002357173.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_002357174.1	PFAM: tRNA pseudouridine synthase D TruD; KEGG: shw:Sputw3181_1259 pseudouridylate synthase
YP_002357175.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_002357176.1	KEGG: shw:Sputw3181_1261 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_002357177.1	PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: shm:Shewmr7_1193 peptidase M23B
YP_002357178.1	TIGRFAM: RNA polymerase sigma factor RpoS; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: son:SO_3432 RNA polymerase sigma-38 factor
YP_002357179.1	This protein performs the mismatch recognition step during the DNA repair process
YP_002357181.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_002357182.1	PFAM: regulatory protein RecX; KEGG: shw:Sputw3181_1266 regulatory protein RecX
YP_002357183.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002357184.1	KEGG: son:SO_3427 aspartokinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase
YP_002357185.1	affects carbohydrate metabolism; has regulatory role in many processes
YP_002357188.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_002357189.1	PFAM: DNA polymerase III chi subunit HolC; KEGG: shw:Sputw3181_1271 DNA polymerase III chi subunit, HolC
YP_002357190.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_002357191.1	PFAM: permease YjgP/YjgQ family protein; KEGG: shn:Shewana3_3005 permease YjgP/YjgQ family protein
YP_002357192.1	PFAM: permease YjgP/YjgQ family protein; KEGG: shw:Sputw3181_2984 permease YjgP/YjgQ family protein
YP_002357193.1	PFAM: RDD domain containing protein; KEGG: shn:Shewana3_3003 RDD domain-containing protein
YP_002357194.1	KEGG: spc:Sputcn32_1182 hypothetical protein
YP_002357195.1	PFAM: protein of unknown function DUF486; KEGG: shw:Sputw3181_2981 protein of unknown function DUF486
YP_002357196.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_2980 GCN5-related N-acetyltransferase
YP_002357197.1	PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: shm:Shewmr7_2902 carboxypeptidase Taq
YP_002357198.1	PFAM: Domain of unknown function DUF1791; KEGG: she:Shewmr4_2818 hypothetical protein
YP_002357199.1	PFAM: protein of unknown function DUF1449; KEGG: shw:Sputw3181_2979 protein of unknown function DUF1449
YP_002357200.1	PFAM: band 7 protein; KEGG: shw:Sputw3181_2978 band 7 protein
YP_002357201.1	KEGG: shw:Sputw3181_2977 hypothetical protein
YP_002357202.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_2976 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_002357203.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002357204.1	KEGG: shw:Sputw3181_2974 hypothetical protein
YP_002357205.1	PFAM: extracellular solute-binding protein family 3; KEGG: shm:Shewmr7_2896 hypothetical protein
YP_002357206.1	KEGG: shw:Sputw3181_2971 hypothetical protein
YP_002357207.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shn:Shewana3_2991 redoxin domain-containing protein
YP_002357208.1	PFAM: conserved hypothetical protein; KEGG: sdn:Sden_3555 hypothetical protein
YP_002357209.1	PFAM: homocysteine S-methyltransferase; KEGG: asa:ASA_1525 homocysteine S-methyltransferase
YP_002357210.1	PFAM: amino acid permease-associated region; Amino acid transporter transmembrane; KEGG: spc:Sputcn32_3864 amino acid permease-associated region
YP_002357211.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: spc:Sputcn32_1195 DEAD/DEAH box helicase domain-containing protein
YP_002357212.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: shn:Shewana3_2987 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor
YP_002357213.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: son:SO_1387 HD domain-containing protein
YP_002357214.1	PFAM: creatinase; peptidase M24; KEGG: shn:Shewana3_2986 peptidase M24
YP_002357215.1	PFAM: ROK family protein; KEGG: son:SO_1389 ROK family protein
YP_002357216.1	PFAM: PKD domain containing protein; glycoside hydrolase family 18; Carbohydrate-binding family V/XII; Chitinase A domain protein; SMART: chitinase II; KEGG: sdn:Sden_2136 chitinase
YP_002357217.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: shw:Sputw3181_2964 peptidylprolyl isomerase, FKBP-type
YP_002357218.1	PFAM: short chain fatty acid transporter; KEGG: shw:Sputw3181_2963 short chain fatty acid transporter
YP_002357219.1	KEGG: dps:DP0534 hypothetical protein
YP_002357220.1	PFAM: protein of unknown function DUF1294; KEGG: son:SO_1395 membrane protein,putative
YP_002357221.1	PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: shw:Sputw3181_2961 protein of unknown function DUF405
YP_002357222.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: son:SO_1397 cytosine deaminase
YP_002357223.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aha:AHA_0957 HTH-type transcriptional regulator XapR
YP_002357224.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_002357225.1	KEGG: shn:Shewana3_2976 hypothetical protein
YP_002357226.1	PFAM: protein of unknown function DUF368; KEGG: shw:Sputw3181_2958 protein of unknown function DUF368
YP_002357227.1	PFAM: YheO domain protein; KEGG: shn:Shewana3_2973 YheO domain-containing protein
YP_002357228.1	PFAM: protein of unknown function DUF1063; KEGG: son:SO_1403 hypothetical protein
YP_002357229.1	TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: shn:Shewana3_2971 putative endoribonuclease L-PSP
YP_002357230.1	KEGG: she:Shewmr4_2791 HAAAP family transport protein
YP_002357231.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002357232.1	KEGG: saz:Sama_0621 hypothetical protein
YP_002357233.1	KEGG: sdn:Sden_0607 hypothetical protein
YP_002357234.1	PFAM: transglutaminase domain protein; KEGG: shm:Shewmr7_2873 twin-arginine translocation pathway signal
YP_002357235.1	KEGG: shm:Shewmr7_2872 mercuric transport protein MerT, putative
YP_002357236.1	PFAM: Heavy metal transport/detoxification protein; KEGG: son:SO_1407 mercuric transport periplasmic protein MerP, putative
YP_002357237.1	KEGG: she:Shewmr4_1162 hypothetical protein
YP_002357238.1	PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: shw:Sputw3181_1296 protein of unknown function DUF1722
YP_002357239.1	PFAM: regulatory protein MerR; KEGG: shw:Sputw3181_1297 putative transcriptional regulator, MerR family
YP_002357240.1	PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: spc:Sputcn32_2714 deoxyribodipyrimidine photo-lyase
YP_002357241.1	KEGG: shw:Sputw3181_1299 transcriptional regulator-related protein
YP_002357242.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: spc:Sputcn32_2712 short-chain dehydrogenase/reductase SDR
YP_002357243.1	PFAM: amine oxidase; KEGG: shw:Sputw3181_1301 amine oxidase
YP_002357244.1	PFAM: protein of unknown function DUF1365; KEGG: shw:Sputw3181_1302 protein of unknown function DUF1365
YP_002357245.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: spc:Sputcn32_2709 cyclopropane-fatty-acyl-phospholipid synthase
YP_002357246.1	KEGG: shw:Sputw3181_1304 hypothetical protein
YP_002357247.1	KEGG: shw:Sputw3181_1305 hypothetical protein
YP_002357248.1	KEGG: shw:Sputw3181_1306 hypothetical protein
YP_002357249.1	KEGG: shn:Shewana3_1175 hypothetical protein
YP_002357250.1	KEGG: spc:Sputcn32_2705 hypothetical protein
YP_002357251.1	KEGG: shn:Shewana3_1177 hypothetical protein
YP_002357253.1	PFAM: cytochrome B561; KEGG: shw:Sputw3181_1308 cytochrome b561
YP_002357254.1	PFAM: YceI family protein; KEGG: spc:Sputcn32_2702 hypothetical protein
YP_002357255.1	PFAM: Fe(II) trafficking protein YggX; KEGG: spc:Sputcn32_2701 hypothetical protein
YP_002357256.1	TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; A/G-specific adenine glycosylase MutY; KEGG: shw:Sputw3181_1311 A/G-specific adenine glycosylase
YP_002357257.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_002357258.1	PFAM: protein of unknown function DUF469; KEGG: shw:Sputw3181_1313 hypothetical protein
YP_002357259.1	catalyzes the formation of glutamate from glutamine
YP_002357260.1	KEGG: shn:Shewana3_1185 hypothetical protein
YP_002357261.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_1316 transcriptional regulator, LysR family
YP_002357262.1	PFAM: protein of unknown function DUF885; KEGG: she:Shewmr4_1186 hypothetical protein
YP_002357263.1	KEGG: shm:Shewmr7_1258 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_002357264.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_002357265.1	KEGG: shm:Shewmr7_1260 hypothetical protein
YP_002357266.1	PFAM: protein of unknown function DUF167; KEGG: shw:Sputw3181_1321 hypothetical protein
YP_002357267.1	PFAM: protein of unknown function YGGT; KEGG: shw:Sputw3181_1322 protein of unknown function YGGT
YP_002357268.1	KEGG: shw:Sputw3181_1323 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein
YP_002357269.1	PFAM: alanine racemase domain protein; KEGG: shw:Sputw3181_1324 alanine racemase domain protein
YP_002357270.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: son:SO_3351 twitching motility protein PilT
YP_002357271.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: shw:Sputw3181_1326 twitching motility protein
YP_002357272.1	PFAM: glutathione peroxidase; KEGG: shw:Sputw3181_1327 glutathione peroxidase
YP_002357273.1	PFAM: ferrochelatase; KEGG: spc:Sputcn32_2683 ferrochelatase
YP_002357274.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_002357275.1	PFAM: protein of unknown function DUF179; KEGG: shw:Sputw3181_1330 protein of unknown function DUF179
YP_002357276.1	involved in start site selection during the initiation of translation
YP_002357277.1	KEGG: shw:Sputw3181_1332 hypothetical protein
YP_002357278.1	KEGG: son:SO_3343 hypothetical protein
YP_002357279.1	PFAM: protein of unknown function UPF0126; KEGG: shw:Sputw3181_1334 protein of unknown function UPF0126
YP_002357280.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_1275 thiol peroxidase (atypical 2-Cys peroxiredoxin)
YP_002357281.1	PFAM: MscS Mechanosensitive ion channel; KEGG: shn:Shewana3_1206 MscS mechanosensitive ion channel
YP_002357282.1	PFAM: OmpA/MotB domain protein; KEGG: shw:Sputw3181_1337 OmpA/MotB domain protein
YP_002357283.1	PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: spc:Sputcn32_2673 threonine aldolase
YP_002357284.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: she:Shewmr4_1208 putative signal transduction protein
YP_002357285.1	KEGG: son:SO_3336 hypothetical protein
YP_002357286.1	PFAM: protein of unknown function DUF980; KEGG: spc:Sputcn32_2672 hypothetical protein
YP_002357287.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shw:Sputw3181_1340 diguanylate cyclase
YP_002357288.1	PFAM: extracellular solute-binding protein family 1; KEGG: she:Shewmr4_1212 extracellular solute-binding protein
YP_002357289.1	KEGG: she:Shewmr4_1213 CopG family transcriptional regulator
YP_002357290.1	KEGG: shm:Shewmr7_1285 hypothetical protein
YP_002357291.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_1342 GCN5-related N-acetyltransferase
YP_002357292.1	KEGG: shw:Sputw3181_1343 hypothetical protein
YP_002357293.1	KEGG: shw:Sputw3181_1344 NrfJ-related protein
YP_002357294.1	PFAM: GCN5-related N-acetyltransferase; KEGG: spc:Sputcn32_2666 GCN5-related N-acetyltransferase
YP_002357295.1	PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO_3323 acetyltransferase
YP_002357296.1	PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: spc:Sputcn32_2664 pirin domain-containing protein
YP_002357297.1	PFAM: DoxX family protein; KEGG: shw:Sputw3181_1348 DoxX family protein
YP_002357298.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_1223 LysR family transcriptional regulator
YP_002357299.1	PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: shw:Sputw3181_1350 5'-nucleotidase domain protein
YP_002357300.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: shn:Shewana3_1225 hypothetical protein
YP_002357301.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_002357302.1	KEGG: shw:Sputw3181_1353 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein
YP_002357303.1	KEGG: spc:Sputcn32_2653 hypothetical protein
YP_002357304.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_002357305.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_002357306.1	KEGG: spc:Sputcn32_2650 hypothetical protein
YP_002357307.1	with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis
YP_002357308.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_002357309.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_002357310.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_002357311.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_002357312.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: shw:Sputw3181_1363 CMP/dCMP deaminase, zinc-binding
YP_002357313.1	YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function
YP_002357314.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_002357315.1	PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: shw:Sputw3181_1366 cytochrome bd ubiquinol oxidase, subunit I
YP_002357316.1	KEGG: shw:Sputw3181_1367 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II
YP_002357317.1	TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: shw:Sputw3181_1368 cyd operon protein YbgT
YP_002357318.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shn:Shewana3_1293 methyl-accepting chemotaxis sensory transducer
YP_002357319.1	PFAM: protein of unknown function DUF465; KEGG: son:SO_3280 hypothetical protein
YP_002357320.1	PFAM: acriflavin resistance protein; KEGG: shn:Shewana3_1295 acriflavin resistance protein
YP_002357321.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: spc:Sputcn32_2635 RND family efflux transporter MFP subunit
YP_002357322.1	PFAM: regulatory protein TetR; KEGG: shw:Sputw3181_1373 transcriptional regulator, TetR family
YP_002357323.1	KEGG: spc:Sputcn32_2633 hypothetical protein
YP_002357324.1	KEGG: shn:Shewana3_1299 hypothetical protein
YP_002357325.1	KEGG: shm:Shewmr7_1320 hypothetical protein
YP_002357326.1	PFAM: protein of unknown function DUF115; KEGG: son:SO_3273 hypothetical protein
YP_002357327.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: son:SO_3271 polysaccharide biosynthesis protein
YP_002357328.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002357329.1	PFAM: acylneuraminate cytidylyltransferase; KEGG: son:SO_3269 cytidyltransferase-like protein
YP_002357330.1	PFAM: glycoside hydrolase family 57; KEGG: son:SO_3268 alpha amylase domain-containing protein
YP_002357331.1	PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; KEGG: son:SO_3265 hypothetical protein
YP_002357332.1	PFAM: Methyltransferase type 11; KEGG: son:SO_3264 hypothetical protein
YP_002357333.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: son:SO_3263 3-oxoacyl-(acyl-carrier-protein) reductase, putative
YP_002357334.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: son:SO_3262 acetolactate synthase isozyme I, large subunit
YP_002357335.1	PFAM: N-acetylneuraminic acid synthase domain; KEGG: son:SO_3261 polysaccharide biosynthesis related-protein
YP_002357336.1	KEGG: son:SO_3260 hypothetical protein
YP_002357337.1	PFAM: protein of unknown function DUF115; KEGG: son:SO_3259 hypothetical protein
YP_002357338.1	KEGG: shw:Sputw3181_1398 hypothetical protein
YP_002357339.1	KEGG: spc:Sputcn32_2604 hypothetical protein
YP_002357340.1	PFAM: protein of unknown function DUF400; KEGG: son:SO_3256 hypothetical protein
YP_002357341.1	PFAM: FlgN family protein; KEGG: shw:Sputw3181_1401 FlgN family protein
YP_002357342.1	PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: shw:Sputw3181_1402 anti-sigma-28 factor, FlgM
YP_002357343.1	required for the assembly of the flagellar basal body P-ring
YP_002357344.1	PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO_3252 chemotaxis protein CheV
YP_002357345.1	PFAM: MCP methyltransferase CheR-type; KEGG: spc:Sputcn32_2598 protein-glutamate O-methyltransferase
YP_002357346.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod
YP_002357347.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_002357348.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production
YP_002357349.1	the hook connects flagellar basal body to the flagellar filament
YP_002357350.1	FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod
YP_002357351.1	makes up the distal portion of the flagellar basal body rod
YP_002357352.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_002357353.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_002357354.1	Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space
YP_002357355.1	TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: shn:Shewana3_1330 flagellar hook-associated protein FlgK
YP_002357356.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.
YP_002357357.1	PFAM: flagellin domain protein; KEGG: shl:Shal_1438 flagellin domain-containing protein
YP_002357358.1	PFAM: flagellin domain protein; KEGG: slo:Shew_1357 flagellin domain-containing protein
YP_002357359.1	PFAM: flagellar protein FlaG protein; KEGG: shn:Shewana3_1334 flagellar protein FlaG protein
YP_002357360.1	PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: shw:Sputw3181_1420 flagellar hook-associated 2 domain protein
YP_002357361.1	KEGG: shw:Sputw3181_1421 hypothetical protein
YP_002357362.1	flagellin specific chaperone
YP_002357363.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; flagellar regulatory FleQ domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: shn:Shewana3_1338 sigma-54 dependent trancsriptional regulator
YP_002357364.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: shw:Sputw3181_1424 PAS/PAC sensor signal transduction histidine kinase
YP_002357365.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: shm:Shewmr7_1347 two component, sigma54 specific, transcriptional regulator, fis family
YP_002357366.1	TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: shw:Sputw3181_1426 flagellar hook-basal body complex subunit FliE
YP_002357367.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_002357368.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_002357369.1	binds to and inhibits the function of flagella specific ATPase FliI
YP_002357370.1	involved in type III protein export during flagellum assembly
YP_002357371.1	TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: spc:Sputcn32_2572 flagellar export protein FliJ
YP_002357372.1	PFAM: flagellar hook-length control protein; KEGG: shm:Shewmr7_1354 flagellar hook-length control protein
YP_002357373.1	interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring
YP_002357374.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_002357375.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_002357376.1	PFAM: flagellar biosynthesis protein FliO; KEGG: shw:Sputw3181_1436 flagellar biosynthesis protein, FliO
YP_002357377.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_002357378.1	TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: shw:Sputw3181_1438 flagellar biosynthetic protein FliQ
YP_002357379.1	FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus
YP_002357380.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_002357381.1	membrane protein involved in the flagellar export apparatus
YP_002357382.1	positive regulator of class III flagellar genes
YP_002357383.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: spc:Sputcn32_2560 cobyrinic acid a,c-diamide synthase
YP_002357384.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes
YP_002357385.1	PFAM: response regulator receiver; KEGG: son:SO_3209 chemotaxis protein CheY
YP_002357386.1	PFAM: Chemotaxis phosphatase CheZ; KEGG: shw:Sputw3181_1446 chemotaxis phosphatase, CheZ
YP_002357387.1	PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: she:Shewmr4_1302 CheA signal transduction histidine kinases
YP_002357388.1	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins
YP_002357389.1	KEGG: shn:Shewana3_1364 hypothetical protein
YP_002357390.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: shw:Sputw3181_1450 cobyrinic acid a,c-diamide synthase
YP_002357391.1	PFAM: CheW domain protein; KEGG: shm:Shewmr7_1373 CheW protein
YP_002357392.1	PFAM: CheW domain protein; KEGG: shw:Sputw3181_1452 putative CheW protein
YP_002357393.1	KEGG: shn:Shewana3_1368 hypothetical protein
YP_002357394.1	KEGG: shn:Shewana3_1369 FlhB domain-containing protein
YP_002357395.1	KEGG: shn:Shewana3_1370 hypothetical protein
YP_002357396.1	PFAM: VacJ family lipoprotein; KEGG: shn:Shewana3_1371 VacJ family lipoprotein
YP_002357397.1	PFAM: response regulator receiver; KEGG: shm:Shewmr7_1379 response regulator receiver protein
YP_002357398.1	KEGG: spc:Sputcn32_2545 amino acid/peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1
YP_002357399.1	TIGRFAM: transcriptional activator RfaH; PFAM: NGN domain protein; KEGG: spc:Sputcn32_2544 NusG antitermination factor
YP_002357400.1	PFAM: polysaccharide export protein; protein of unknown function DUF1017; KEGG: shw:Sputw3181_1461 polysaccharide export protein
YP_002357401.1	PFAM: lipopolysaccharide biosynthesis protein; KEGG: she:Shewmr4_1317 lipopolysaccharide biosynthesis
YP_002357402.1	NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose
YP_002357403.1	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: son:SO_3186 glucose-1-phosphate-thymidylyltransferase
YP_002357404.1	KEGG: sun:SUN_1549 TDP-4-oxo-6-deoxy-D-glucose transaminase
YP_002357405.1	catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis
YP_002357406.1	PFAM: polysaccharide biosynthesis protein; KEGG: mmw:Mmwyl1_0834 polysaccharide biosynthesis protein
YP_002357407.1	KEGG: spl:Spea_1409 glycosyl transferase group 1
YP_002357408.1	KEGG: bfs:BF3456 putative LPS biosynthesis related polysaccharide polymerase
YP_002357409.1	PFAM: glycosyl transferase group 1; KEGG: pdi:BDI_0571 glycosyl transferase family protein
YP_002357410.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: vfi:VF0191 UDP-2-acetamido-2,6-dideoxy-alpha-D-xylo-4-hexulose 3,5-epimerase
YP_002357411.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: vfi:VF0192 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase
YP_002357412.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: vfi:VF0193 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 2-epimerase
YP_002357413.1	KEGG: mgm:Mmc1_2402 glycosyl transferase, group 1
YP_002357414.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mmw:Mmwyl1_0811 NAD-dependent epimerase/dehydratase
YP_002357415.1	PFAM: sugar transferase; KEGG: son:SO_3172 galactosyl transferase
YP_002357416.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sdn:Sden_2645 polysaccharide biosynthesis protein CapD
YP_002357417.1	TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: shm:Shewmr7_1398 phosphoglucosamine mutase
YP_002357418.1	PFAM: protein of unknown function DUF886; KEGG: son:SO_3164 hypothetical protein
YP_002357419.1	KEGG: shw:Sputw3181_1481 copper resistance lipoprotein NlpE
YP_002357420.1	PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: sdn:Sden_2546 metal-dependent phosphohydrolase
YP_002357421.1	PFAM: GAF domain protein; ATP-binding region ATPase domain protein; KEGG: son:SO_3162 sensor histidine kinase
YP_002357422.1	KEGG: shw:Sputw3181_1476 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related
YP_002357423.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: sdn:Sden_1709 NADH:flavin oxidoreductase/NADH oxidase
YP_002357424.1	PFAM: protein of unknown function DUF940 membrane lipoprotein putative; KEGG: shw:Sputw3181_1485 protein of unknown function DUF940, membrane lipoprotein putative
YP_002357425.1	PFAM: protein of unknown function DUF1017; KEGG: spc:Sputcn32_2522 hypothetical protein
YP_002357426.1	KEGG: shw:Sputw3181_1487 lipoprotein, putative
YP_002357427.1	KEGG: spc:Sputcn32_2520 hypothetical protein
YP_002357428.1	PFAM: Patatin; KEGG: she:Shewmr4_1344 patatin
YP_002357429.1	KEGG: hch:HCH_00810 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase
YP_002357430.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: swd:Swoo_3997 AraC family transcriptional regulator
YP_002357431.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_002357432.1	KEGG: shw:Sputw3181_1491 transferase hexapeptide repeat containing protein
YP_002357433.1	PFAM: protein of unknown function UPF0066; KEGG: spc:Sputcn32_2516 hypothetical protein
YP_002357434.1	KEGG: shw:Sputw3181_1493 lipoprotein, putative
YP_002357435.1	KEGG: shw:Sputw3181_1494 hypothetical protein
YP_002357436.1	PFAM: amidohydrolase; KEGG: spc:Sputcn32_2513 amidohydrolase
YP_002357437.1	KEGG: shn:Shewana3_1403 amidohydrolase
YP_002357438.1	PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: shm:Shewmr7_1416 histone family protein nucleoid-structuring protein H-NS
YP_002357439.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: shn:Shewana3_1405 electron transfer flavoprotein beta-subunit
YP_002357440.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: shw:Sputw3181_1498 electron transfer flavoprotein, alpha subunit
YP_002357441.1	PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_1419 Na+/H+ antiporter NhaC
YP_002357442.1	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: spc:Sputcn32_2508 peptidyl-dipeptidase DCP
YP_002357443.1	KEGG: shn:Shewana3_1409 hypothetical protein
YP_002357444.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_002357445.1	KEGG: shw:Sputw3181_1503 hypothetical protein
YP_002357447.1	PFAM: GCN5-related N-acetyltransferase; KEGG: vvu:VV1_2448 acetyltransferase
YP_002357448.1	PFAM: glucose sorbosone dehydrogenase; KEGG: spc:Sputcn32_1707 glucose sorbosone dehydrogenase
YP_002357449.1	PFAM: protein of unknown function DUF81; KEGG: spc:Sputcn32_1708 hypothetical protein
YP_002357450.1	KEGG: shw:Sputw3181_2316 hypothetical protein
YP_002357451.1	PFAM: ThiJ/PfpI domain protein; KEGG: shw:Sputw3181_2315 ThiJ/PfpI domain protein
YP_002357452.1	KEGG: shw:Sputw3181_2312 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase
YP_002357453.1	KEGG: spc:Sputcn32_1714 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase
YP_002357454.1	PFAM: pyruvate carboxyltransferase; KEGG: she:Shewmr4_2326 hydroxymethylglutaryl-CoA lyase
YP_002357455.1	PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO_1894 acetyl-CoA carboxylase, biotin carboxylase, putative
YP_002357456.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shm:Shewmr7_2396 methylglutaconyl-CoA hydratase
YP_002357457.1	PFAM: carboxyl transferase; KEGG: shw:Sputw3181_2307 propionyl-CoA carboxylase
YP_002357458.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: son:SO_1897 isovaleryl-CoA dehydrogenase
YP_002357459.1	PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: shn:Shewana3_1673 MerR family transcriptional regulator
YP_002357460.1	PFAM: AMP-dependent synthetase and ligase; KEGG: spc:Sputcn32_1721 AMP-dependent synthetase and ligase
YP_002357461.1	PFAM: small multidrug resistance protein; KEGG: shw:Sputw3181_2303 small multidrug resistance protein
YP_002357462.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_002357463.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_2301 transcriptional regulator, LysR family
YP_002357464.1	PFAM: DoxX family protein; KEGG: shn:Shewana3_1684 hypothetical protein
YP_002357465.1	PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: shw:Sputw3181_2300 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B
YP_002357466.1	TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: son:SO_1910 1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative
YP_002357467.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: shw:Sputw3181_2298 short-chain dehydrogenase/reductase SDR
YP_002357468.1	KEGG: shw:Sputw3181_2297 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase
YP_002357469.1	KEGG: shw:Sputw3181_2296 hypothetical protein
YP_002357470.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: son:SO_1915 serine protease
YP_002357471.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_1691 LysR family transcriptional regulator
YP_002357472.1	PFAM: major facilitator superfamily MFS_1; KEGG: spc:Sputcn32_1731 major facilitator transporter
YP_002357473.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: kpe:KPK_2581 transcriptional regulator, LysR family
YP_002357474.1	PFAM: protein of unknown function DUF606; KEGG: ent:Ent638_1093 hypothetical protein
YP_002357475.1	PFAM: protein of unknown function DUF606; KEGG: abc:ACICU_01898 hypothetical protein
YP_002357476.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: shw:Sputw3181_1504 two component, sigma54 specific, transcriptional regulator, fis family
YP_002357477.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: shw:Sputw3181_1505 integral membrane sensor signal transduction histidine kinase
YP_002357478.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: she:Shewmr4_1361 TRAP dicarboxylate transporter, DctM subunit
YP_002357479.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: shn:Shewana3_1415 tripartite ATP-independent periplasmic transporter DctQ
YP_002357480.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: she:Shewmr4_1363 TRAP dicarboxylate transporter, DctP subunit
YP_002357481.1	KEGG: son:SO_3132 hypothetical protein
YP_002357482.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_002357484.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_1510 ABC transporter related
YP_002357485.1	PFAM: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; Ada metal-binding domain protein; AlkA domain protein; KEGG: shw:Sputw3181_1511 AlkA domain protein
YP_002357486.1	KEGG: spc:Sputcn32_2496 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding
YP_002357487.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shw:Sputw3181_1513 DEAD/DEAH box helicase domain protein
YP_002357488.1	PFAM: Dual specificity protein phosphatase; KEGG: shw:Sputw3181_1514 dual specificity protein phosphatase
YP_002357489.1	PFAM: response regulator receiver; CheW domain protein; KEGG: shw:Sputw3181_1515 putative CheW protein
YP_002357490.1	involved in the import of serine and threonine coupled with the import of sodium
YP_002357491.1	PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: spc:Sputcn32_2491 NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30
YP_002357492.1	PFAM: oxidoreductase domain protein; KEGG: shw:Sputw3181_1518 oxidoreductase domain protein
YP_002357493.1	KEGG: shw:Sputw3181_1519 hypothetical protein
YP_002357494.1	PFAM: pseudouridine synthase; KEGG: spc:Sputcn32_2488 pseudouridylate synthase
YP_002357495.1	PFAM: protein of unknown function DUF479; KEGG: shw:Sputw3181_1521 protein of unknown function DUF479
YP_002357496.1	KEGG: shw:Sputw3181_1522 hypothetical protein
YP_002357497.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_002357498.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_002357499.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_002357500.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_002357501.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_002357502.1	KEGG: shw:Sputw3181_1528 hypothetical protein
YP_002357503.1	PFAM: Rhodanese domain protein; KEGG: she:Shewmr4_1387 rhodanese domain-containing protein
YP_002357504.1	TIGRFAM: siroheme synthase; PFAM: Siroheme synthase domain protein; KEGG: shw:Sputw3181_1529 siroheme synthase
YP_002357505.1	PFAM: YaeQ family protein; KEGG: spc:Sputcn32_2478 YaeQ family protein
YP_002357506.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: shn:Shewana3_1443 peptidase S8 and S53, subtilisin, kexin, sedolisin
YP_002357508.1	PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_2619 GCN5-related N-acetyltransferase
YP_002357509.1	PFAM: Rhodanese domain protein; KEGG: shn:Shewana3_1444 rhodanese domain-containing protein
YP_002357510.1	KEGG: shw:Sputw3181_1533 hypothetical protein
YP_002357511.1	PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_1458 acriflavin resistance protein
YP_002357512.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_1394 RND family efflux transporter MFP subunit
YP_002357513.1	PFAM: protein of unknown function DUF541; KEGG: shw:Sputw3181_1536 protein of unknown function DUF541
YP_002357514.1	KEGG: she:Shewmr4_1396 hypothetical protein
YP_002357515.1	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO_3099 long-chain fatty acid transport protein, putative
YP_002357516.1	TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: shn:Shewana3_1451 sodium/proline symporter
YP_002357517.1	KEGG: she:Shewmr4_1399 hypothetical protein
YP_002357518.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_002357519.1	KEGG: shm:Shewmr7_1466 hypothetical protein
YP_002357520.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: von Willebrand factor type A; Tetratricopeptide domain protein; KEGG: spc:Sputcn32_2465 TPR repeat-containing protein
YP_002357521.1	PFAM: von Willebrand factor type A; KEGG: shw:Sputw3181_1544 von Willebrand factor, type A
YP_002357522.1	KEGG: shw:Sputw3181_1545 hypothetical protein
YP_002357523.1	PFAM: protein of unknown function DUF58; KEGG: shw:Sputw3181_1546 protein of unknown function DUF58
YP_002357524.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: shw:Sputw3181_1547 ATPase associated with various cellular activities, AAA_3
YP_002357525.1	FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth
YP_002357526.1	multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate
YP_002357527.1	KEGG: shw:Sputw3181_1550 hypothetical protein
YP_002357528.1	KEGG: slo:Shew_2423 hypothetical protein
YP_002357529.1	KEGG: shw:Sputw3181_1551 hypothetical protein
YP_002357530.1	KEGG: shw:Sputw3181_1552 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002357531.1	PFAM: peptidase M16 domain protein; KEGG: shw:Sputw3181_1553 peptidase M16 domain protein
YP_002357532.1	TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: shw:Sputw3181_1554 phosphohistidine phosphatase, SixA
YP_002357533.1	PFAM: Smr protein/MutS2; KEGG: son:SO_3081 hypothetical protein
YP_002357534.1	involved in methylation of ribosomal protein L3
YP_002357535.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_002357536.1	PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: spc:Sputcn32_2450 major facilitator transporter
YP_002357537.1	PFAM: ATP-NAD/AcoX kinase; KEGG: shw:Sputw3181_1559 ATP-NAD/AcoX kinase
YP_002357538.1	PFAM: YfcL protein; KEGG: shw:Sputw3181_1560 hypothetical protein
YP_002357539.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: shw:Sputw3181_1561 tRNA/rRNA methyltransferase (SpoU)
YP_002357540.1	TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: FAD dependent oxidoreductase; KEGG: spc:Sputcn32_2446 FAD dependent oxidoreductase
YP_002357541.1	PFAM: Beta-ketoacyl synthase; KEGG: shw:Sputw3181_1563 beta-ketoacyl synthase
YP_002357542.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: spc:Sputcn32_2444 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_002357543.1	KEGG: shw:Sputw3181_1565 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region
YP_002357544.1	KEGG: shm:Shewmr7_1490 hypothetical protein
YP_002357545.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_002357546.1	TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: shw:Sputw3181_1568 FolC bifunctional protein
YP_002357547.1	PFAM: Sporulation domain protein; KEGG: shw:Sputw3181_1569 sporulation domain protein
YP_002357548.1	PFAM: Colicin V production protein; KEGG: shw:Sputw3181_1570 colicin V production protein
YP_002357549.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_002357550.1	KEGG: spc:Sputcn32_2436 hypothetical protein
YP_002357551.1	decatenates replicating daughter chromosomes
YP_002357552.1	PFAM: alpha/beta hydrolase fold; KEGG: shw:Sputw3181_1579 alpha/beta hydrolase fold
YP_002357553.1	PFAM: beta-lactamase domain protein; KEGG: shw:Sputw3181_1580 beta-lactamase domain protein
YP_002357554.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO_3052 methyl-accepting chemotaxis protein
YP_002357555.1	PFAM: protein of unknown function DUF182; KEGG: shw:Sputw3181_1581 protein of unknown function DUF182
YP_002357556.1	KEGG: shw:Sputw3181_1582 hypothetical protein
YP_002357557.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: shw:Sputw3181_1583 (2Fe-2S)-binding domain protein
YP_002357558.1	PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: shw:Sputw3181_1584 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
YP_002357559.1	PFAM: protein of unknown function DUF1097; KEGG: son:SO_3047 hypothetical protein
YP_002357560.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_1442 methyl-accepting chemotaxis sensory transducer
YP_002357561.1	PFAM: DSBA oxidoreductase; KEGG: cps:CPS_1239 DsbA-like thioredoxin domain-containing protein
YP_002357562.1	KEGG: pin:Ping_2355 uncharacterized conserved coiled coil protein
YP_002357564.1	KEGG: pin:Ping_3099 hypothetical protein
YP_002357565.1	PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: mmw:Mmwyl1_1963 CRP/FNR family transcriptional regulator
YP_002357566.1	KEGG: rfr:Rfer_4032 hypothetical protein
YP_002357567.1	KEGG: mmw:Mmwyl1_1966 hypothetical protein
YP_002357568.1	PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_1779 transposase IS116/IS110/IS902 family protein
YP_002357569.1	KEGG: sde:Sde_1827 heat shock protein DnaJ-like
YP_002357572.1	KEGG: xcv:XCVd0138 hypothetical protein
YP_002357574.1	KEGG: shm:Shewmr7_1128 antibiotic biosynthesis monooxygenase
YP_002357577.1	removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction
YP_002357578.1	unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity
YP_002357579.1	Involved in cell division; probably involved in intracellular septation
YP_002357580.1	PFAM: ferric iron reductase; KEGG: shw:Sputw3181_1593 ferric iron reductase
YP_002357581.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spc:Sputcn32_2414 TonB-dependent siderophore receptor
YP_002357582.1	PFAM: IucA/IucC family protein; KEGG: spc:Sputcn32_2413 IucA/IucC family protein
YP_002357583.1	KEGG: shw:Sputw3181_1596 siderophore biosynthesis protein, putative
YP_002357584.1	KEGG: shw:Sputw3181_1597 L-lysine 6-monooxygenase (NADPH)
YP_002357585.1	KEGG: shw:Sputw3181_1598 hypothetical protein
YP_002357586.1	KEGG: shw:Sputw3181_1599 hypothetical protein
YP_002357587.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_002357588.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_002357589.1	monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate
YP_002357590.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_002357591.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_002357592.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_002357593.1	PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: shw:Sputw3181_1606 PHP C-terminal domain protein
YP_002357594.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: shw:Sputw3181_1607 SUA5/YciO/YrdC/YwlC family protein
YP_002357595.1	PFAM: chromosome segregation and condensation protein ScpA; KEGG: shw:Sputw3181_1608 chromosome segregation and condensation protein ScpA
YP_002357596.1	TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: shw:Sputw3181_1609 putative transcriptional regulator
YP_002357597.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shw:Sputw3181_1610 pseudouridine synthase
YP_002357598.1	KEGG: shw:Sputw3181_1611 hypothetical protein
YP_002357599.1	PFAM: transposase IS4 family protein; KEGG: son:SO_3544 ISSod7, transposase
YP_002357600.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: shm:Shewmr7_1534 short chain dehydrogenase
YP_002357601.1	KEGG: she:Shewmr4_1469 hypothetical protein
YP_002357602.1	SohB; periplasmic protein; member of the peptidase S49 family
YP_002357603.1	PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: shn:Shewana3_1534 hypothetical protein
YP_002357604.1	PFAM: virulence factor family protein; KEGG: shn:Shewana3_1535 type IV secretory pathway VirJ component-like protein
YP_002357605.1	KEGG: shw:Sputw3181_1615 hypothetical protein
YP_002357606.1	PFAM: lipolytic protein G-D-S-L family; KEGG: shn:Shewana3_1537 GDSL family lipase
YP_002357607.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_1617 ABC transporter related
YP_002357608.1	PFAM: protein of unknown function DUF214; KEGG: shw:Sputw3181_1618 protein of unknown function DUF214
YP_002357609.1	KEGG: son:SO_2924 signal peptidase I family protein; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein
YP_002357610.1	PFAM: sodium/glutamate symporter; KEGG: shw:Sputw3181_1619 sodium/glutamate symporter
YP_002357611.1	PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: shw:Sputw3181_1620 domain of unknown function DUF1731
YP_002357612.1	catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate
YP_002357613.1	PFAM: protein of unknown function UPF0118; KEGG: shm:Shewmr7_1550 protein of unknown function UPF0118
YP_002357614.1	KEGG: spc:Sputcn32_2385 hypothetical protein
YP_002357615.1	KEGG: shn:Shewana3_1546 hypothetical protein
YP_002357616.1	KEGG: shw:Sputw3181_1624 hypothetical protein
YP_002357617.1	KEGG: shn:Shewana3_1548 hypothetical protein
YP_002357618.1	catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate
YP_002357619.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_002357620.1	PFAM: protein of unknown function DUF412; KEGG: shw:Sputw3181_1629 protein of unknown function DUF412
YP_002357621.1	activates pyruvate formate-lyase 1 under anaerobic conditions
YP_002357622.1	KEGG: shw:Sputw3181_1631 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL
YP_002357623.1	PFAM: formate/nitrite transporter; KEGG: shn:Shewana3_1556 methionine gamma-lyase
YP_002357624.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shn:Shewana3_1558 TonB-dependent receptor
YP_002357625.1	PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: shw:Sputw3181_1637 C4-dicarboxylate transporter/malic acid transport protein
YP_002357626.1	PFAM: O-methyltransferase family 2; KEGG: spc:Sputcn32_2371 O-methyltransferase family protein
YP_002357627.1	TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: shw:Sputw3181_1639 cysteine synthase A
YP_002357628.1	PFAM: RDD domain containing protein; KEGG: shw:Sputw3181_1640 RDD domain containing protein
YP_002357629.1	catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_002357630.1	putative role in sulfur assimilation
YP_002357631.1	TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: shw:Sputw3181_1643 chromosome segregation protein SMC
YP_002357632.1	TIGRFAM: cell division protein ZipA; PFAM: ZipA FtsZ-binding region; KEGG: shn:Shewana3_1568 cell division protein ZipA
YP_002357633.1	KEGG: shw:Sputw3181_1645 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase
YP_002357634.1	KEGG: shn:Shewana3_1570 hypothetical protein
YP_002357635.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: son:SO_2862 HDIG domain-containing protein
YP_002357636.1	KEGG: spc:Sputcn32_2361 NAD-dependent epimerase/dehydratase
YP_002357637.1	PFAM: DSBA oxidoreductase; KEGG: shn:Shewana3_1573 DsbA oxidoreductase
YP_002357638.1	KEGG: son:SO_2858 hypothetical protein
YP_002357639.1	PFAM: Na+/solute symporter; KEGG: shm:Shewmr7_1581 Na+/solute symporter
YP_002357640.1	PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: shw:Sputw3181_1652 cyclic nucleotide-binding protein
YP_002357641.1	PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: spc:Sputcn32_2356 exonuclease, RNase T and DNA polymerase III
YP_002357642.1	KEGG: she:Shewmr4_1519 hypothetical protein
YP_002357643.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis
YP_002357644.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: shw:Sputw3181_1655 transcriptional regulator, GntR family
YP_002357645.1	Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate
YP_002357646.1	KEGG: spc:Sputcn32_1610 hypothetical protein
YP_002357647.1	periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate
YP_002357648.1	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: shw:Sputw3181_2410 peptidyl-dipeptidase DCP
YP_002357649.1	KEGG: shw:Sputw3181_3078 hypothetical protein
YP_002357650.1	PFAM: GCN5-related N-acetyltransferase; KEGG: mmw:Mmwyl1_2948 GCN5-related N-acetyltransferase
YP_002357652.1	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: she:Shewmr4_2302 peptidyl-dipeptidase DCP
YP_002357653.1	KEGG: she:Shewmr4_2301 hypothetical protein; TIGRFAM: dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_002357654.1	KEGG: dps:DP2995 hypothetical protein
YP_002357655.1	KEGG: shn:Shewana3_2487 gamma-glutamyltransferase 1; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase
YP_002357656.1	PFAM: protein of unknown function DUF482; KEGG: shw:Sputw3181_2357 protein of unknown function DUF482
YP_002357657.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_2367 lysine exporter protein (LysE/YggA)
YP_002357658.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO_1961 maltose O-acetyltransferase
YP_002357659.1	KEGG: spc:Sputcn32_1670 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_002357660.1	PFAM: homogentisate 12-dioxygenase; KEGG: spc:Sputcn32_1671 homogentisate 1,2-dioxygenase
YP_002357661.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_2353 transcriptional regulator, LysR family
YP_002357662.1	PFAM: protein of unknown function DUF124; KEGG: shw:Sputw3181_2352 protein of unknown function DUF124
YP_002357663.1	KEGG: son:SO_1967 hypothetical protein
YP_002357664.1	KEGG: shn:Shewana3_2478 hypothetical protein
YP_002357665.1	PFAM: protein of unknown function DUF55; KEGG: shm:Shewmr7_2359 protein of unknown function DUF55
YP_002357666.1	KEGG: shw:Sputw3181_2347 hypothetical protein
YP_002357667.1	PFAM: AMP-dependent synthetase and ligase; KEGG: shw:Sputw3181_2346 acyl-CoA synthetase
YP_002357668.1	KEGG: shn:Shewana3_2474 hypothetical protein
YP_002357669.1	KEGG: shm:Shewmr7_2355 conserved hypothetical ABC transporter protein
YP_002357670.1	KEGG: shm:Shewmr7_2354 zinc carboxypeptidase-related protein
YP_002357671.1	PFAM: alpha/beta hydrolase fold; KEGG: shm:Shewmr7_2353 alpha/beta hydrolase fold
YP_002357672.1	PFAM: protein of unknown function DUF307; KEGG: shw:Sputw3181_1678 hypothetical protein
YP_002357673.1	KEGG: spc:Sputcn32_2329 hypothetical protein
YP_002357674.1	KEGG: shw:Sputw3181_1683 hypothetical protein
YP_002357675.1	KEGG: shw:Sputw3181_1684 hypothetical protein
YP_002357676.1	TIGRFAM: anti-sigma factor, , ChrR family; KEGG: shw:Sputw3181_1685 anti-ECFsigma factor, ChrR
YP_002357677.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: shw:Sputw3181_1686 RNA polymerase, sigma-24 subunit, ECF subfamily
YP_002357678.1	PFAM: peptidase S16 lon domain protein; KEGG: she:Shewmr4_2274 peptidase S16, lon domain-containing protein
YP_002357679.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_2345 methyltransferase type 11
YP_002357680.1	PFAM: response regulator receiver; CheW domain protein; KEGG: shw:Sputw3181_1689 putative CheW protein
YP_002357681.1	KEGG: shw:Sputw3181_1690 hypothetical protein
YP_002357682.1	KEGG: shw:Sputw3181_1691 hypothetical protein
YP_002357683.1	TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: shw:Sputw3181_1692 lytic murein transglycosylase
YP_002357684.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: shn:Shewana3_2458 peptidylprolyl isomerase, FKBP-type
YP_002357685.1	PFAM: Peptidase M1 membrane alanine aminopeptidase ; Leukotriene A4 hydrolase; KEGG: shw:Sputw3181_1694 peptidase M1, membrane alanine aminopeptidase
YP_002357686.1	KEGG: shw:Sputw3181_1695 hypothetical protein
YP_002357687.1	PFAM: phospholipase/Carboxylesterase; KEGG: shw:Sputw3181_1696 carboxylesterase
YP_002357688.1	catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides
YP_002357689.1	KEGG: shw:Sputw3181_1698 transcriptional regulator, TraR/DksA family
YP_002357690.1	PFAM: dihydrouridine synthase DuS; KEGG: shw:Sputw3181_1699 dihydrouridine synthase, DuS
YP_002357691.1	KEGG: she:Shewmr4_2260 hypothetical protein
YP_002357692.1	PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: spc:Sputcn32_2307 hypothetical protein
YP_002357693.1	KEGG: shw:Sputw3181_1702 hypothetical protein
YP_002357694.1	KEGG: shm:Shewmr7_2329 hypothetical protein
YP_002357695.1	PFAM: protein of unknown function DUF454; KEGG: shw:Sputw3181_1704 protein of unknown function DUF454
YP_002357696.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_002357697.1	KEGG: shn:Shewana3_2446 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase
YP_002357698.1	PFAM: conserved hypothetical protein; KEGG: shw:Sputw3181_1707 conserved hypothetical protein 103
YP_002357699.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_002357700.1	PFAM: GCN5-related N-acetyltransferase; KEGG: spc:Sputcn32_1266 GCN5-related N-acetyltransferase
YP_002357701.1	KEGG: pat:Patl_1925 hypothetical protein
YP_002357702.1	catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA
YP_002357703.1	PFAM: glutaredoxin 2; KEGG: son:SO_1852 hypothetical protein
YP_002357704.1	Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth
YP_002357705.1	KEGG: shn:Shewana3_1604 hypothetical protein
YP_002357706.1	PFAM: ribosome modulation factor; KEGG: shw:Sputw3181_2389 ribosome modulation factor
YP_002357707.1	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP
YP_002357708.1	KEGG: shw:Sputw3181_2387 conserved hypothetical ATP-dependent protease
YP_002357709.1	PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pfl:PFL_2312 methyl-accepting chemotaxis transducer
YP_002357710.1	in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system
YP_002357711.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_002357712.1	KEGG: shw:Sputw3181_2384 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_002357713.1	involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans
YP_002357714.1	alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family
YP_002357715.1	putative metalloprotease
YP_002357716.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_002357717.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_2415 lysine exporter protein (LysE/YggA)
YP_002357718.1	bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine
YP_002357719.1	PFAM: amino acid-binding ACT domain protein; KEGG: son:SO_1878 glycine cleavage system transcriptional repressor, putative
YP_002357720.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_002357721.1	PFAM: NlpBDapX family lipoprotein; KEGG: she:Shewmr4_2339 NlpB/DapX family lipoprotein
YP_002357722.1	KEGG: shn:Shewana3_3302 ISPsy11, transposase OrfA
YP_002357724.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_2410 efflux transporter, RND family, MFP subunit
YP_002357725.1	PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_2409 acriflavin resistance protein
YP_002357726.1	molecular chaperone
YP_002357727.1	PFAM: Thioredoxin domain; KEGG: shw:Sputw3181_1710 thioredoxin domain
YP_002357728.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_002357729.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_002357730.1	PFAM: PfkB domain protein; KEGG: shw:Sputw3181_1713 inosine kinase
YP_002357731.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_002357732.1	KEGG: shw:Sputw3181_1715 hypothetical protein
YP_002357733.1	KEGG: shm:Shewmr7_2316 hypothetical protein
YP_002357734.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_2315 diguanylate cyclase
YP_002357735.1	PFAM: integrase family protein; KEGG: mag:amb3648 integrase
YP_002357737.1	KEGG: abu:Abu_1680 hypothetical protein
YP_002357739.1	PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: shl:Shal_3773 resolvase domain-containing protein
YP_002357740.1	PFAM: protein of unknown function DUF358; KEGG: ppr:PBPRA1526 hypothetical protein
YP_002357741.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_1716 transcriptional regulator, LysR family
YP_002357742.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: shw:Sputw3181_1717 NADH:flavin oxidoreductase/NADH oxidase
YP_002357743.1	PFAM: sulfatase; KEGG: shn:Shewana3_2428 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
YP_002357744.1	PFAM: protein of unknown function DUF1414; KEGG: son:SO_2176 hypothetical protein
YP_002357745.1	PFAM: 37kDa nucleoid-associated protein; KEGG: shw:Sputw3181_1720 nucleoid-associated protein NdpA
YP_002357746.1	PFAM: Di-haem cytochrome c peroxidase; KEGG: shw:Sputw3181_1721 cytochrome-c peroxidase
YP_002357747.1	KEGG: shn:Shewana3_2424 isocitrate dehydrogenase (NADP(+))
YP_002357748.1	PFAM: Peptidase M23; KEGG: shw:Sputw3181_1723 peptidase M23B
YP_002357749.1	KEGG: shw:Sputw3181_1724 hypothetical protein
YP_002357750.1	PFAM: protein of unknown function DUF991; KEGG: spc:Sputcn32_2283 hypothetical protein
YP_002357751.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: son:SO_2183 hypothetical protein
YP_002357752.1	PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: spc:Sputcn32_2281 ion transport protein
YP_002357753.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: shw:Sputw3181_1728 MATE efflux family protein
YP_002357754.1	KEGG: son:SO_1921 hypothetical protein
YP_002357755.1	PFAM: protein of unknown function DUF437; KEGG: shw:Sputw3181_1730 hypothetical protein
YP_002357756.1	PFAM: acriflavin resistance protein; KEGG: shw:Sputw3181_1731 acriflavin resistance protein
YP_002357757.1	PFAM: acriflavin resistance protein; KEGG: shw:Sputw3181_1732 acriflavin resistance protein
YP_002357758.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shn:Shewana3_1704 RND family efflux transporter MFP subunit
YP_002357759.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_002357760.1	TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: shn:Shewana3_1706 succinate dehydrogenase subunit C
YP_002357761.1	TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: shw:Sputw3181_1736 conserved hypothetical succinate dehydrogenase, hydrophobic subunit
YP_002357762.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_002357763.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_002357764.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_002357765.1	TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: shw:Sputw3181_1740 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase
YP_002357766.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_002357767.1	TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: son:SO_1933 succinyl-CoA synthase, alpha subunit
YP_002357768.1	PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: shn:Shewana3_1714 GreA/GreB family elongation factor
YP_002357769.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_1744 GCN5-related N-acetyltransferase
YP_002357770.1	negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer
YP_002357771.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_002357772.1	KEGG: she:Shewmr4_1643 hypothetical protein
YP_002357773.1	KEGG: shw:Sputw3181_1748 hypothetical protein
YP_002357774.1	TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: shw:Sputw3181_1749 magnesium and cobalt transport protein CorA
YP_002357775.1	KEGG: shn:Shewana3_1721 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_002357776.1	SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: shn:Shewana3_1722 prolyl 4-hydroxylase, alpha subunit
YP_002357777.1	PFAM: ATP-binding region ATPase domain protein; KEGG: son:SO_1945 sensor protein PhoQ
YP_002357778.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shw:Sputw3181_1753 two component transcriptional regulator, winged helix family
YP_002357779.1	KEGG: shw:Sputw3181_1754 hypothetical protein
YP_002357780.1	PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_1657 sodium:dicarboxylate symporter
YP_002357781.1	PFAM: Ig domain protein group 1 domain protein; KEGG: slo:Shew_2226 Ig domain-containing protein
YP_002357782.1	catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation
YP_002357783.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_002357784.1	KEGG: shw:Sputw3181_1759 hypothetical protein
YP_002357785.1	LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation
YP_002357786.1	PFAM: regulatory protein LuxR; response regulator receiver; KEGG: son:SO_2648 LuxR family DNA-binding response regulator
YP_002357787.1	PFAM: thioesterase superfamily protein; KEGG: shn:Shewana3_1733 thioesterase superfamily protein
YP_002357788.1	PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; chitinase domain protein; SMART: chitinase II; KEGG: swd:Swoo_2719 glycoside hydrolase family protein
YP_002357789.1	tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate
YP_002357790.1	PFAM: protein of unknown function DUF299; KEGG: shw:Sputw3181_1764 hypothetical protein
YP_002357791.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_002357792.1	PFAM: FAD linked oxidase domain protein; KEGG: shw:Sputw3181_1766 FAD linked oxidase domain protein
YP_002357793.1	PFAM: protein of unknown function DUF1285; KEGG: shw:Sputw3181_1768 protein of unknown function DUF1285
YP_002357794.1	PFAM: regulatory protein MarR; KEGG: shw:Sputw3181_1769 transcriptional regulator, MarR family
YP_002357795.1	KEGG: shw:Sputw3181_1770 hypothetical protein
YP_002357796.1	PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: shw:Sputw3181_1771 Glu/Leu/Phe/Val dehydrogenase, dimerisation region
YP_002357797.1	KEGG: shw:Sputw3181_1772 hypothetical protein
YP_002357798.1	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: spc:Sputcn32_2236 cupin 4 family protein
YP_002357799.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_002357800.1	HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis
YP_002357801.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_002357802.1	PFAM: NUDIX hydrolase; KEGG: shw:Sputw3181_1777 NUDIX hydrolase
YP_002357803.1	PFAM: pseudouridine synthase; KEGG: shw:Sputw3181_1778 pseudouridylate synthase
YP_002357804.1	KEGG: shw:Sputw3181_1779 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type
YP_002357805.1	KEGG: son:SO_2628 stress response protein CspD; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein
YP_002357806.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_002357807.1	KEGG: spc:Sputcn32_2227 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; ATP-dependent Clp protease ATP-binding subunit clpA; SMART: AAA ATPase
YP_002357808.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_002357809.1	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate
YP_002357810.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_002357811.1	PFAM: 17 kDa surface antigen; KEGG: shw:Sputw3181_1786 17 kDa surface antigen
YP_002357812.1	PFAM: protein of unknown function DUF34; KEGG: shw:Sputw3181_1787 protein of unknown function DUF34
YP_002357813.1	PFAM: Auxin Efflux Carrier; KEGG: shw:Sputw3181_1788 auxin efflux carrier
YP_002357814.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_002357815.1	PFAM: Mrp protein; KEGG: spc:Sputcn32_2219 ATP-binding Mrp/Nbp35 family protein
YP_002357816.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_002357817.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_002357818.1	TIGRFAM: aminodeoxychorismate lyase; PFAM: aminotransferase class IV; KEGG: shw:Sputw3181_1793 aminotransferase, class IV
YP_002357819.1	PFAM: aminodeoxychorismate lyase; KEGG: shw:Sputw3181_1794 aminodeoxychorismate lyase
YP_002357820.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_002357821.1	TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: shw:Sputw3181_1796 DNA polymerase III, delta prime subunit
YP_002357822.1	KEGG: shw:Sputw3181_1797 type IV pilus biogenesis protein PilZ
YP_002357823.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: shw:Sputw3181_1798 hydrolase, TatD family
YP_002357824.1	in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA
YP_002357825.1	PFAM: nucleoside recognition domain protein; KEGG: shw:Sputw3181_1800 nucleoside recognition domain protein
YP_002357826.1	PFAM: Mammalian cell entry related domain protein; KEGG: shw:Sputw3181_1801 mammalian cell entry related domain protein
YP_002357827.1	PFAM: Paraquat-inducible protein A; KEGG: shn:Shewana3_1773 paraquat-inducible protein A
YP_002357828.1	PFAM: Paraquat-inducible protein A; KEGG: shw:Sputw3181_1803 paraquat-inducible protein A
YP_002357829.1	PFAM: YebG family protein; KEGG: shw:Sputw3181_1804 YebG family protein
YP_002357830.1	PFAM: GAF domain protein; KEGG: shw:Sputw3181_1805 putative GAF sensor protein
YP_002357831.1	affects solute and DNA transport through an unknown mechanism
YP_002357832.1	Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3
YP_002357833.1	TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: spc:Sputcn32_2201 aminopeptidase N
YP_002357834.1	KEGG: shw:Sputw3181_1809 hypothetical protein
YP_002357835.1	PFAM: protein of unknown function DUF1302; KEGG: spc:Sputcn32_2199 hypothetical protein
YP_002357836.1	PFAM: protein of unknown function DUF1329; KEGG: she:Shewmr4_1677 hypothetical protein
YP_002357837.1	KEGG: shw:Sputw3181_1812 BNR repeat protein
YP_002357838.1	KEGG: shw:Sputw3181_1813 hypothetical protein
YP_002357839.1	PFAM: NAD-glutamate dehydrogenase; KEGG: shw:Sputw3181_1814 NAD-glutamate dehydrogenase
YP_002357840.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_002357841.1	PFAM: protein of unknown function DUF1379; KEGG: shw:Sputw3181_1816 protein of unknown function DUF1379
YP_002357844.1	PFAM: transposase IS4 family protein; KEGG: she:Shewmr4_2240 IS4 family transposase
YP_002357845.1	KEGG: seg:SG1047 hypothetical protein
YP_002357847.1	PFAM: transposase IS4 family protein; KEGG: she:Shewmr4_2240 IS4 family transposase
YP_002357849.1	KEGG: son:SO_0305 hypothetical protein
YP_002357850.1	PFAM: conserved hypothetical protein; KEGG: shw:Sputw3181_1820 uncharacterized conserved protein UCP025560
YP_002357851.1	KEGG: spc:Sputcn32_2188 hypothetical protein
YP_002357852.1	KEGG: spc:Sputcn32_2187 hypothetical protein
YP_002357853.1	TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: shw:Sputw3181_1823 aromatic amino acid transporter
YP_002357854.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis
YP_002357855.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_002357856.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_002357857.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_002357858.1	catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate
YP_002357859.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_002357860.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_002357861.1	long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors
YP_002357862.1	SMART: helicase c2; KEGG: shw:Sputw3181_2185 helicase C2
YP_002357863.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shn:Shewana3_1861 TonB-dependent receptor
YP_002357864.1	KEGG: sdn:Sden_2845 hypothetical protein
YP_002357865.1	PFAM: protein of unknown function DUF938; KEGG: shw:Sputw3181_1832 protein of unknown function DUF938
YP_002357866.1	PFAM: FAD dependent oxidoreductase; KEGG: shw:Sputw3181_1833 FAD dependent oxidoreductase
YP_002357867.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_1834 transcriptional regulator, LysR family
YP_002357868.1	TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: spc:Sputcn32_2174 alcohol dehydrogenase
YP_002357869.1	KEGG: shw:Sputw3181_1836 carboxylesterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase
YP_002357870.1	KEGG: shw:Sputw3181_1837 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain
YP_002357871.1	hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides
YP_002357872.1	PFAM: protein of unknown function UPF0227; KEGG: shw:Sputw3181_1840 hypothetical protein
YP_002357873.1	PFAM: protein of unknown function DUF1568; KEGG: shm:Shewmr7_1178 protein of unknown function DUF1568
YP_002357874.1	KEGG: LPF7; similar to a group of Candida orfs that show   weak similarity to Leucine-rich repeat viral proteins
YP_002357875.1	KEGG: spc:Sputcn32_2162 hypothetical protein
YP_002357876.1	KEGG: shw:Sputw3181_1849 hypothetical protein
YP_002357877.1	catalyzes the hydrolysis of acylphosphate
YP_002357878.1	KEGG: shw:Sputw3181_1852 hypothetical protein
YP_002357879.1	KEGG: spc:Sputcn32_2158 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases
YP_002357880.1	KEGG: she:Shewmr4_1731 hypothetical protein
YP_002357881.1	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: shw:Sputw3181_1855 lipoprotein releasing system, transmembrane protein, LolC/E family
YP_002357882.1	KEGG: spc:Sputcn32_2155 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002357883.1	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: shw:Sputw3181_1857 lipoprotein releasing system, transmembrane protein, LolC/E family
YP_002357884.1	PFAM: inositol monophosphatase; KEGG: shw:Sputw3181_1858 inositol-phosphate phosphatase
YP_002357885.1	TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: shw:Sputw3181_1859 RNA methyltransferase, TrmH family, group 1
YP_002357886.1	TIGRFAM: serine O-acetyltransferase; KEGG: shw:Sputw3181_1860 serine O-acetyltransferase
YP_002357887.1	TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: shn:Shewana3_2281 BadM/Rrf2 family transcriptional regulator
YP_002357888.1	catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis
YP_002357889.1	TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: son:SO_2265 scaffold protein
YP_002357890.1	TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: shw:Sputw3181_1864 iron-sulfur cluster assembly protein IscA
YP_002357891.1	J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins
YP_002357892.1	involved in the maturation of iron-sulfur cluster-containing proteins
YP_002357893.1	TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: shw:Sputw3181_1867 ferredoxin, 2Fe-2S type, ISC system
YP_002357894.1	TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: shw:Sputw3181_1868 alpha-L-glutamate ligases, RimK family
YP_002357895.1	TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: shn:Shewana3_2273 hypothetical protein
YP_002357896.1	KEGG: slo:Shew_1754 hypothetical protein
YP_002357897.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_002357898.1	PFAM: heat shock protein Hsp20; KEGG: son:SO_2277 16 kDa heat shock protein A
YP_002357899.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_002357900.1	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: spc:Sputcn32_2138 acetolactate synthase 3 catalytic subunit
YP_002357901.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: shw:Sputw3181_1875 drug resistance transporter, Bcr/CflA subfamily
YP_002357902.1	KEGG: shw:Sputw3181_1876 alkaline phosphatase
YP_002357903.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: shn:Shewana3_2266 GntR family transcriptional regulator
YP_002357904.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shn:Shewana3_2265 lysine exporter protein LysE/YggA
YP_002357905.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: shw:Sputw3181_1879 sulphate transporter
YP_002357906.1	KEGG: shw:Sputw3181_1880 hypothetical protein
YP_002357907.1	PFAM: Glutathione S-transferase domain; KEGG: shn:Shewana3_2262 glutathione S-transferase domain-containing protein
YP_002357908.1	PFAM: Rhodanese domain protein; KEGG: shw:Sputw3181_1881 hypothetical protein
YP_002357909.1	KEGG: shw:Sputw3181_1882 hypothetical protein
YP_002357910.1	KEGG: shw:Sputw3181_1883 hypothetical protein
YP_002357911.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_002357912.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: she:Shewmr4_1852 iron-containing alcohol dehydrogenase
YP_002357913.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: shn:Shewana3_1908 DegT/DnrJ/EryC1/StrS aminotransferase
YP_002357914.1	PFAM: carbonic anhydrase; KEGG: shw:Sputw3181_1885 carbonate dehydratase
YP_002357915.1	KEGG: saz:Sama_1643 hypothetical protein
YP_002357916.1	KEGG: saz:Sama_1644 topoisomerase IV, subunit B
YP_002357917.1	PFAM: alpha/beta hydrolase fold; KEGG: shm:Shewmr7_2123 alpha/beta hydrolase fold
YP_002357918.1	PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: shw:Sputw3181_1887 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin
YP_002357919.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_002357920.1	PFAM: arsenate reductase and related; KEGG: son:SO_2470 hypothetical protein
YP_002357922.1	PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_0854 major facilitator superfamily MFS_1
YP_002357923.1	functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose
YP_002357924.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: she:Shewmr4_1764 phosphoenolpyruvate--protein phosphotransferase
YP_002357925.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: shm:Shewmr7_1843 phosphocarrier, HPr family
YP_002357926.1	KEGG: shn:Shewana3_2255 hypothetical protein
YP_002357927.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: shn:Shewana3_2254 methyl-accepting chemotaxis sensory transducer
YP_002357928.1	KEGG: shw:Sputw3181_1897 hypothetical protein
YP_002357929.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: shm:Shewmr7_1847 transcriptional regulator, LacI family
YP_002357930.1	KEGG: spc:Sputcn32_2114 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease
YP_002357931.1	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: shw:Sputw3181_2100 cupin 4 family protein
YP_002357932.1	PFAM: UMUC domain protein DNA-repair protein; KEGG: shw:Sputw3181_1082 DNA-directed DNA polymerase
YP_002357933.1	PFAM: peptidase S24 and S26 domain protein; KEGG: pmr:PMI2484 DNA repair protein
YP_002357934.1	PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: shw:Sputw3181_2099 sodium/sulphate symporter
YP_002357935.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: spc:Sputcn32_1910 helix-turn-helix domain-containing protein
YP_002357936.1	KEGG: son:SO_2460 hypothetical protein
YP_002357937.1	PFAM: glycoside hydrolase 15-related; Glucodextranase N; KEGG: shn:Shewana3_1924 glucan 1,4-alpha-glucosidase
YP_002357938.1	PFAM: major facilitator superfamily MFS_1; KEGG: son:SO_2458 transporter, putative
YP_002357939.1	PFAM: YCII-related; KEGG: shw:Sputw3181_2097 YCII-related protein
YP_002357940.1	KEGG: shm:Shewmr7_2106 alpha/beta hydrolase fold
YP_002357941.1	KEGG: shw:Sputw3181_2096 hypothetical protein
YP_002357942.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: spc:Sputcn32_1913 alkylhydroperoxidase
YP_002357943.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: shw:Sputw3181_2094 helix-turn-helix-domain containing protein, AraC type
YP_002357944.1	KEGG: son:SO_2450 alpha-glucosidase
YP_002357945.1	KEGG: spc:Sputcn32_1916 hypothetical protein
YP_002357946.1	PFAM: NUDIX hydrolase; KEGG: shw:Sputw3181_2090 NUDIX hydrolase
YP_002357947.1	PFAM: DTW domain containing protein; KEGG: shw:Sputw3181_2089 DTW domain containing protein
YP_002357948.1	TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: spc:Sputcn32_1920 hemolysin III family channel protein
YP_002357949.1	KEGG: shn:Shewana3_3302 ISPsy11, transposase OrfA
YP_002357950.1	KEGG: shw:Sputw3181_2087 hypothetical protein
YP_002357951.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_002357952.1	KEGG: spc:Sputcn32_1923 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1
YP_002357953.1	PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: shw:Sputw3181_2084 UBA/ThiF-type NAD/FAD binding protein
YP_002357954.1	TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: spc:Sputcn32_1925 thiamine biosynthesis protein ThiS
YP_002357955.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_002357956.1	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center
YP_002357957.1	KEGG: shm:Shewmr7_2091 conserved hypothetical methyl-accepting chemotaxis protein
YP_002357958.1	KEGG: shm:Shewmr7_2090 SrpA-related protein
YP_002357959.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_2078 transcriptional regulator, LysR family
YP_002357960.1	KEGG: shm:Shewmr7_2087 hypothetical protein
YP_002357961.1	TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: she:Shewmr4_1892 alpha-L-glutamate ligase-like protein
YP_002357962.1	KEGG: shm:Shewmr7_2085 gonadoliberin III-related protein
YP_002357963.1	PFAM: protein of unknown function DUF785; KEGG: shn:Shewana3_1949 hypothetical protein
YP_002357964.1	TIGRFAM: methyltransferase; PFAM: methyltransferase putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: spc:Sputcn32_1932 putative methyltransferase
YP_002357965.1	TIGRFAM: methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: spc:Sputcn32_1933 putative methyltransferase
YP_002357966.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; KEGG: spc:Sputcn32_1934 diguanylate cyclase
YP_002357967.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_002357968.1	PFAM: protein of unknown function DUF28; KEGG: spc:Sputcn32_1936 hypothetical protein
YP_002357969.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_002357970.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_002357971.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_002357972.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shn:Shewana3_1958 TonB-dependent receptor
YP_002357973.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shw:Sputw3181_2064 two component transcriptional regulator, winged helix family
YP_002357974.1	PFAM: peptidase M14 carboxypeptidase A; KEGG: shn:Shewana3_1960 peptidase M14, carboxypeptidase A
YP_002357975.1	KEGG: shw:Sputw3181_2062 hypothetical protein
YP_002357976.1	PFAM: protein of unknown function DUF1315; KEGG: shw:Sputw3181_2061 protein of unknown function DUF1315
YP_002357977.1	converts asparagine to aspartate and ammonia
YP_002357978.1	KEGG: shw:Sputw3181_1934 signal peptide peptidase SppA, 67K type; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49
YP_002357979.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_1910 2,4-dienoyl-CoA reductase
YP_002357980.1	PFAM: ferredoxin; KEGG: shn:Shewana3_1967 ferredoxin
YP_002357981.1	B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA
YP_002357982.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_002357983.1	KEGG: shn:Shewana3_1970 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase
YP_002357984.1	Involved in ubiquinone biosynthesis
YP_002357985.1	KEGG: shw:Sputw3181_1942 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller
YP_002357986.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_002357987.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: son:SO_2409 LysR family transcriptional regulator
YP_002357988.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: son:SO_2408 radical activating enzyme
YP_002357989.1	KEGG: son:SO_2407 hypothetical protein
YP_002357990.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_002357991.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_002357992.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_002357993.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_002357994.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_002357995.1	PFAM: protein of unknown function DUF1049; KEGG: shw:Sputw3181_1973 protein of unknown function DUF1049
YP_002357996.1	KEGG: son:SO_2399 hypothetical protein
YP_002357997.1	type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_002357998.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: shw:Sputw3181_1976 short chain dehydrogenase
YP_002357999.1	KEGG: shw:Sputw3181_1977 hypothetical protein
YP_002358000.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: spc:Sputcn32_2035 acyl-CoA dehydrogenase domain-containing protein
YP_002358001.1	KEGG: spc:Sputcn32_2034 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C
YP_002358002.1	KEGG: shw:Sputw3181_1980 hypothetical protein
YP_002358003.1	PFAM: Domain of unknown function DUF1904; KEGG: shw:Sputw3181_1981 hypothetical protein
YP_002358004.1	catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome
YP_002358005.1	multidrug efflux protein involved in adaptation to low energy shock
YP_002358006.1	PFAM: beta-lactamase; KEGG: shw:Sputw3181_1984 beta-lactamase
YP_002358007.1	PFAM: DTW domain containing protein; KEGG: shw:Sputw3181_1985 DTW domain containing protein
YP_002358008.1	PFAM: protein of unknown function DUF839; KEGG: shn:Shewana3_1995 hypothetical protein
YP_002358009.1	PFAM: integrase family protein; KEGG: shn:Shewana3_1996 phage integrase family protein
YP_002358010.1	KEGG: shn:Shewana3_1997 hypothetical protein
YP_002358011.1	KEGG: shw:Sputw3181_1987 hypothetical protein
YP_002358012.1	KEGG: spc:Sputcn32_2025 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases
YP_002358013.1	KEGG: shw:Sputw3181_1989 hypothetical protein
YP_002358014.1	serine protease inhibitor, inhibits trypsin and other proteases
YP_002358015.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: spc:Sputcn32_2100 cation diffusion facilitator family transporter
YP_002358016.1	PFAM: regulatory protein MarR; KEGG: shw:Sputw3181_1913 transcriptional regulator, MarR family
YP_002358017.1	PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: shw:Sputw3181_1914 prolyl oligopeptidase
YP_002358018.1	PFAM: sulfatase; protein of unknown function DUF1705; KEGG: she:Shewmr4_2103 sulfatase
YP_002358019.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_1872 diguanylate cyclase
YP_002358020.1	PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: shw:Sputw3181_2172 CoA-binding domain protein
YP_002358021.1	PFAM: chemotaxis sensory transducer; KEGG: son:SO_2117 methyl-accepting chemotaxis protein
YP_002358022.1	KEGG: son:SO_2118 SpoIIAA family protein
YP_002358023.1	PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: son:SO_2119 response regulator
YP_002358024.1	PFAM: response regulator receiver; KEGG: shm:Shewmr7_1880 response regulator receiver protein
YP_002358025.1	PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: shm:Shewmr7_1881 CheA signal transduction histidine kinases
YP_002358026.1	PFAM: CheW domain protein; KEGG: shn:Shewana3_2217 CheW protein
YP_002358027.1	PFAM: chemotaxis sensory transducer; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: shm:Shewmr7_1883 methyl-accepting chemotaxis sensory transducer
YP_002358028.1	PFAM: MCP methyltransferase CheR-type; KEGG: she:Shewmr4_2090 MCP methyltransferase, CheR-type
YP_002358029.1	stimulates methylation of MCP proteins; catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_002358030.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: shn:Shewana3_2213 response regulator receiver modulated CheB methylesterase
YP_002358031.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; Hpt domain protein; KEGG: shn:Shewana3_2212 response regulator receiver modulated diguanylate cyclase
YP_002358032.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_2265 methyltransferase type 12
YP_002358033.1	SMART: HNH nuclease; KEGG: sse:Ssed_2264 HNH nuclease
YP_002358034.1	PFAM: NERD domain protein; KEGG: sfr:Sfri_3140 hypothetical protein
YP_002358035.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_2170 ABC transporter related
YP_002358036.1	KEGG: sdn:Sden_1749 hypothetical protein
YP_002358037.1	PFAM: phytase; KEGG: she:Shewmr4_2083 3-phytase
YP_002358038.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shn:Shewana3_2207 TonB-dependent receptor
YP_002358039.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shn:Shewana3_2206 diguanylate cyclase
YP_002358040.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: shn:Shewana3_2205 AraC family transcriptional regulator
YP_002358041.1	KEGG: shn:Shewana3_2202 XRE family transcriptional regulator
YP_002358042.1	PFAM: EAL domain protein; response regulator receiver; KEGG: shn:Shewana3_2201 response regulator receiver modulated diguanylate phosphodiesterase
YP_002358044.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: shn:Shewana3_2200 response regulator receiver protein
YP_002358045.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sfr:Sfri_0198 diguanylate cyclase
YP_002358046.1	KEGG: shm:Shewmr7_1896 hypothetical protein
YP_002358047.1	KEGG: shn:Shewana3_2198 hypothetical protein
YP_002358048.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shw:Sputw3181_2168 TonB-dependent siderophore receptor
YP_002358049.1	PFAM: PepSY-associated TM helix domain protein; KEGG: she:Shewmr4_2076 PepSY-associated TM helix domain-containing protein
YP_002358050.1	KEGG: shw:Sputw3181_2166 hypothetical protein
YP_002358051.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shw:Sputw3181_0090 TonB-dependent siderophore receptor
YP_002358052.1	KEGG: ilo:IL1219 hypothetical protein
YP_002358053.1	PFAM: CsbD family protein; KEGG: eugene3.30440002.
YP_002358054.1	KEGG: rfr:Rfer_1879 hypothetical protein
YP_002358055.1	KEGG: cyt:cce_0034 hypothetical protein
YP_002358056.1	KEGG: shn:Shewana3_2018 hypothetical protein
YP_002358057.1	KEGG: shn:Shewana3_2019 hypothetical protein; Contains selenocysteine
YP_002358058.1	KEGG: shn:Shewana3_2020 phage integrase family protein
YP_002358059.1	KEGG: shn:Shewana3_2021 metal dependent phosphohydrolase
YP_002358060.1	KEGG: shn:Shewana3_2021 metal dependent phosphohydrolase
YP_002358061.1	PFAM: integrase family protein; KEGG: shn:Shewana3_2022 phage integrase family protein
YP_002358062.1	KEGG: shn:Shewana3_2023 hypothetical protein
YP_002358063.1	KEGG: shn:Shewana3_2024 hypothetical protein
YP_002358064.1	catalyzes the phosphorylation of ribulose to ribulose 5-phosphate
YP_002358065.1	catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
YP_002358066.1	catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism
YP_002358067.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: spc:Sputcn32_2065 beta-phosphoglucomutase family hydrolase
YP_002358068.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: shw:Sputw3181_1948 GntR domain protein
YP_002358069.1	PFAM: glycoside hydrolase family 43; KEGG: spc:Sputcn32_2063 glycoside hydrolase family protein
YP_002358070.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_002358071.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: shw:Sputw3181_1951 short-chain dehydrogenase/reductase SDR
YP_002358072.1	PFAM: Aldose 1-epimerase; KEGG: spc:Sputcn32_2060 aldose 1-epimerase
YP_002358073.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: shm:Shewmr7_1988 periplasmic binding protein/LacI transcriptional regulator
YP_002358074.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_1954 ABC transporter related
YP_002358075.1	PFAM: inner-membrane translocator; KEGG: shw:Sputw3181_1955 inner-membrane translocator
YP_002358076.1	membrane component of a putative sugar ABC transporter system
YP_002358077.1	PFAM: glycoside hydrolase family 43; KEGG: shw:Sputw3181_1957 alpha-N-arabinofuranosidase
YP_002358078.1	PFAM: protein of unknown function DUF1680; KEGG: she:Shewmr4_1993 hypothetical protein
YP_002358079.1	PFAM: glycoside hydrolase family 43; KEGG: shw:Sputw3181_1959 alpha-N-arabinofuranosidase
YP_002358080.1	TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: shw:Sputw3181_1960 sugar (glycoside-pentoside-hexuronide) transporter
YP_002358081.1	PFAM: glycoside hydrolase family 43; KEGG: spc:Sputcn32_2051 arabinan endo-1,5-alpha-L-arabinosidase
YP_002358082.1	PFAM: glycoside hydrolase family 43; KEGG: shw:Sputw3181_1962 alpha-N-arabinofuranosidase
YP_002358083.1	PFAM: protein of unknown function DUF81; KEGG: shw:Sputw3181_1963 protein of unknown function DUF81
YP_002358084.1	KEGG: cja:CJA_0817 alpha-glucosidase, putative, adg97A
YP_002358085.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_2288 peptidase M24A, methionine aminopeptidase, subfamily 1
YP_002358086.1	KEGG: she:Shewmr4_1999 glycoside hydrolase family protein
YP_002358087.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: shw:Sputw3181_1966 SMP-30/gluconolaconase/LRE domain protein
YP_002358088.1	related to aryl-alcohol dehydrogenase; KEGG: bpt:Bpet2192 oxidoreductase
YP_002358090.1	PFAM: Radical SAM domain protein; KEGG: vvu:VV2_0908 molybdenum cofactor biosynthesis protein
YP_002358091.1	KEGG: pin:Ping_3075 hypothetical protein
YP_002358092.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shw:Sputw3181_3878 TonB-dependent receptor
YP_002358093.1	KEGG: shm:Shewmr7_3579 hypothetical protein
YP_002358094.1	PFAM: PepSY-associated TM helix domain protein; KEGG: sdn:Sden_0618 PepSY-associated TM helix
YP_002358095.1	PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: sdn:Sden_2173 regulatory protein, MerR
YP_002358096.1	PFAM: regulatory protein TetR; KEGG: ajs:Ajs_2168 TetR family transcriptional regulator
YP_002358097.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ent:Ent638_2277 NADH:flavin oxidoreductase/NADH oxidase
YP_002358098.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ent:Ent638_2278 short-chain dehydrogenase/reductase SDR
YP_002358099.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ent:Ent638_2279 short chain dehydrogenase
YP_002358100.1	KEGG: pol:Bpro_0104 hypothetical protein
YP_002358101.1	PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: lch:Lcho_3647 alcohol dehydrogenase
YP_002358102.1	KEGG: ecv:APECO1_3506 hypothetical protein
YP_002358103.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: shw:Sputw3181_1991 MATE efflux family protein
YP_002358104.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_002358105.1	KEGG: shw:Sputw3181_1993 hypothetical protein
YP_002358106.1	KEGG: son:SO_2298 hypothetical protein
YP_002358107.1	catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002358108.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_002358109.1	PFAM: ribosomal protein L35; KEGG: shw:Sputw3181_1996 50S ribosomal protein L35
YP_002358110.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_002358111.1	TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: shw:Sputw3181_1998 thioredoxin reductase
YP_002358112.1	TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: shw:Sputw3181_1999 alanine dehydrogenase
YP_002358113.1	mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system
YP_002358114.1	PFAM: cell divisionFtsK/SpoIIIE; KEGG: spc:Sputcn32_2011 cell divisionFtsK/SpoIIIE
YP_002358115.1	PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: shw:Sputw3181_2002 outer membrane lipoprotein carrier protein LolA
YP_002358116.1	PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: shn:Shewana3_2052 recombination factor protein RarA
YP_002358117.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_002358118.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002358119.1	KEGG: shn:Shewana3_2055 hypothetical protein
YP_002358120.1	TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: shw:Sputw3181_2007 DsrC family protein
YP_002358121.1	TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: shw:Sputw3181_2008 DsrH family protein
YP_002358122.1	TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: shw:Sputw3181_2009 DsrE family protein
YP_002358123.1	TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: shw:Sputw3181_2010 DsrE family protein
YP_002358124.1	PFAM: protein of unknown function UPF0005; KEGG: shw:Sputw3181_2011 protein of unknown function UPF0005
YP_002358125.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: she:Shewmr4_1974 putative DNA-binding transcriptional regulator
YP_002358126.1	uncharacterized member of the major facilitator superfamily (MFS)
YP_002358127.1	KEGG: sat:SYN_02590 anthranilate phosphoribosyltransferase; TIGRFAM: PAS sensor protein; diguanylate cyclase; anthranilate phosphoribosyltransferase; PFAM: GGDEF domain containing protein; glycosyl transferase family 3; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; Glycosyl transferase, family 3-like; SMART: PAS domain containing protein
YP_002358128.1	KEGG: shn:Shewana3_2063 hypothetical protein
YP_002358129.1	PFAM: multi antimicrobial extrusion protein MatE; KEGG: bha:BH2163 hypothetical protein
YP_002358130.1	PFAM: protein of unknown function DUF81; KEGG: shw:Sputw3181_1963 protein of unknown function DUF81
YP_002358132.1	PFAM: integrase family protein; KEGG: shn:Shewana3_2104 phage integrase family protein
YP_002358133.1	KEGG: shm:Shewmr7_1972 hypothetical protein
YP_002358134.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: shm:Shewmr7_1971 response regulator receiver modulated metal dependent phosphohydrolase
YP_002358135.1	KEGG: shw:Sputw3181_2045 hypothetical protein
YP_002358136.1	CcoN; FixN
YP_002358137.1	CcoO; FixO
YP_002358138.1	PFAM: Cbb3-type cytochrome oxidase component; KEGG: shn:Shewana3_2109 Cbb3-type cytochrome oxidase component
YP_002358139.1	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: son:SO_2361 cytochrome c oxidase, cbb3-type, subunit III
YP_002358140.1	PFAM: FixH family protein; KEGG: shw:Sputw3181_2050 hypothetical protein
YP_002358141.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: shw:Sputw3181_2051 heavy metal translocating P-type ATPase
YP_002358142.1	TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: son:SO_2358 cytochrome oxidase maturation protein, cbb3-type
YP_002358143.1	KEGG: shw:Sputw3181_2053 hypothetical protein
YP_002358144.1	Global transcription factor that controls the expression of over 100 target genes in response to anoxia
YP_002358145.1	with UspC and UspD is involved in resistance to UV irradiation
YP_002358146.1	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs
YP_002358147.1	KEGG: shw:Sputw3181_2057 hypothetical protein
YP_002358148.1	KEGG: shm:Shewmr7_1957 bax protein, putative
YP_002358149.1	PFAM: protein of unknown function UPF0052 and CofD; KEGG: shw:Sputw3181_2059 protein of unknown function UPF0052 and CofD
YP_002358150.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_002358151.1	catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent
YP_002358152.1	KEGG: she:Shewmr4_2022 hypothetical protein
YP_002358153.1	KEGG: spc:Sputcn32_1889 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase
YP_002358154.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_002358155.1	PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: spc:Sputcn32_1887 dihydrolipoamide acetyltransferase
YP_002358156.1	PFAM: Transketolase central region; Transketolase domain protein; KEGG: spc:Sputcn32_1886 transketolase, central region
YP_002358157.1	PFAM: dehydrogenase E1 component; KEGG: shw:Sputw3181_2123 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)
YP_002358158.1	catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism
YP_002358159.1	TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: spc:Sputcn32_1883 peptide methionine sulfoxide reductase
YP_002358160.1	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate
YP_002358161.1	negative modulator of the initiation of chromosome replication
YP_002358162.1	PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: shw:Sputw3181_2128 alpha/beta hydrolase fold
YP_002358163.1	KEGG: shw:Sputw3181_2129 hypothetical protein
YP_002358164.1	PFAM: CopG domain protein DNA-binding domain protein; KEGG: shw:Sputw3181_2130 LexA regulated protein
YP_002358165.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_002358166.1	KEGG: shw:Sputw3181_2132 hypothetical protein
YP_002358167.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_002358168.1	PFAM: glutamine synthetase catalytic region; KEGG: cvi:CV_4298 glutamine synthetase
YP_002358169.1	PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_1936 Na+/H+ antiporter NhaC
YP_002358170.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_002358171.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: shw:Sputw3181_2137 hypothetical protein
YP_002358172.1	dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_002358173.1	catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate
YP_002358174.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_002358175.1	TIGRFAM: 6-phosphogluconolactonase; KEGG: spc:Sputcn32_1867 6-phosphogluconolactonase
YP_002358176.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_002358177.1	Represses the expression of the zwf, eda, glp and gap
YP_002358178.1	KEGG: shw:Sputw3181_2144 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta
YP_002358179.1	functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA
YP_002358180.1	PFAM: regulatory protein TetR; KEGG: son:SO_2493 TetR family transcriptional regulator
YP_002358181.1	PFAM: peptidase M2 peptidyl-dipeptidase A; KEGG: she:Shewmr4_2051 peptidyl-dipeptidase A
YP_002358182.1	PFAM: Smr protein/MutS2; KEGG: she:Shewmr4_2052 Smr protein/MutS2
YP_002358183.1	KEGG: shn:Shewana3_2158 hypothetical protein
YP_002358184.1	PFAM: SEC-C motif domain protein; KEGG: she:Shewmr4_2054 SecC motif-containing protein
YP_002358185.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: shm:Shewmr7_1920 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
YP_002358186.1	KEGG: shw:Sputw3181_2152 hypothetical protein
YP_002358187.1	KEGG: shm:Shewmr7_1918 hypothetical protein
YP_002358189.1	PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: saz:Sama_1824 pyridoxal-5'-phosphate-dependent enzyme, beta subunit
YP_002358190.1	KEGG: spc:Sputcn32_1855 radical activating enzyme
YP_002358191.1	YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His
YP_002358192.1	PFAM: Rhomboid family protein; KEGG: shw:Sputw3181_2156 rhomboid family protein
YP_002358193.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_002358194.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: shm:Shewmr7_1912 diguanylate cyclase/phosphodiesterase
YP_002358195.1	TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: shw:Sputw3181_2159 Na(+)-translocating NADH-quinone reductase subunit E
YP_002358196.1	part of membrane-bound complex thought to be involved in electron transport to nitrogen
YP_002358197.1	part of membrane-bound complex thought to be involved in electron transport to nitrogen
YP_002358198.1	RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents
YP_002358199.1	part of membrane-bound complex hought to be involved in electron transport to nitrogen
YP_002358200.1	in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase
YP_002358201.1	KEGG: shm:Shewmr7_1905 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; Endonuclease III/Nth; SMART: iron-sulfur cluster loop
YP_002358202.1	KEGG: shn:Shewana3_2194 hypothetical protein
YP_002358203.1	KEGG: shw:Sputw3181_1911 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_002358204.1	in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme
YP_002358205.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_002358206.1	PFAM: protein of unknown function DUF195; KEGG: shw:Sputw3181_1908 protein of unknown function DUF195
YP_002358207.1	PFAM: Lytic transglycosylase catalytic; KEGG: shw:Sputw3181_1907 lytic transglycosylase, catalytic
YP_002358208.1	PFAM: EAL domain protein; KEGG: spc:Sputcn32_2106 diguanylate phosphodiesterase
YP_002358209.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: shn:Shewana3_2242 ATPase
YP_002358210.1	PFAM: protein of unknown function DUF58; KEGG: shm:Shewmr7_1855 protein of unknown function DUF58
YP_002358211.1	PFAM: transglutaminase domain protein; KEGG: son:SO_2150 transglutaminase family protein
YP_002358212.1	TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: shw:Sputw3181_1902 exodeoxyribonuclease V, gamma subunit
YP_002358213.1	TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: shw:Sputw3181_1901 exodeoxyribonuclease V, beta subunit
YP_002358214.1	TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: shw:Sputw3181_1900 exodeoxyribonuclease V, alpha subunit
YP_002358215.1	PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO_1883 acetyltransferase
YP_002358216.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_002358217.1	PFAM: transposase IS4 family protein; KEGG: son:SO_3544 ISSod7, transposase
YP_002358218.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; KEGG: spc:Sputcn32_1800 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
YP_002358219.1	PFAM: Fmu (Sun) domain protein; KEGG: spc:Sputcn32_1799 Fmu (Sun) domain-containing protein
YP_002358220.1	TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_2310 glucose/galactose transporter
YP_002358221.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: shm:Shewmr7_2209 alpha amylase, catalytic region
YP_002358222.1	TIGRFAM: outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfr:Sfri_1787 TonB-dependent receptor
YP_002358223.1	PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sfr:Sfri_1786 tryptophan halogenase
YP_002358224.1	PFAM: alpha amylase catalytic region; Cyclomaltodextrinase; SMART: alpha amylase catalytic sub domain; KEGG: shm:Shewmr7_2211 alpha amylase, catalytic region
YP_002358225.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: she:Shewmr4_2136 alpha amylase, catalytic region
YP_002358226.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: shm:Shewmr7_2213 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002358227.1	KEGG: shm:Shewmr7_2214 hypothetical protein
YP_002358228.1	PFAM: ferredoxin-dependent glutamate synthase; KEGG: amc:MADE_02050 glutamate synthase
YP_002358229.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: chu:CHU_2249 pyruvate dehydrogenase (cytochrome)
YP_002358230.1	PFAM: FAD dependent oxidoreductase; KEGG: nfa:nfa3040 putative oxidoreductase
YP_002358231.1	KEGG: mmw:Mmwyl1_1966 hypothetical protein
YP_002358232.1	KEGG: sfr:Sfri_1817 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase
YP_002358233.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfr:Sfri_1818 binding-protein-dependent transport systems inner membrane component
YP_002358234.1	with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine
YP_002358235.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vch:VCA0355 hypothetical protein
YP_002358236.1	KEGG: shw:Sputw3181_2229 hypothetical protein
YP_002358237.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_002358238.1	PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: shm:Shewmr7_2220 methylated-DNA-(protein)-cysteine S-methyltransferase
YP_002358239.1	KEGG: shw:Sputw3181_2232 hypothetical protein
YP_002358240.1	PFAM: glutamine amidotransferase class-II; KEGG: son:SO_2535 amidotransferase
YP_002358241.1	functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA
YP_002358242.1	PFAM: Acetamidase/Formamidase; KEGG: sus:Acid_5428 acetamidase/formamidase
YP_002358243.1	PFAM: sodium/hydrogen exchanger; KEGG: shn:Shewana3_2324 sodium/hydrogen exchanger
YP_002358244.1	KEGG: shw:Sputw3181_2244 hypothetical protein
YP_002358245.1	KEGG: shm:Shewmr7_2234 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease
YP_002358246.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_002358247.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shm:Shewmr7_2236 transcriptional regulator, LysR family
YP_002358248.1	PFAM: Methyltransferase type 11; KEGG: shw:Sputw3181_2248 methyltransferase type 11
YP_002358249.1	KEGG: shw:Sputw3181_2249 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein
YP_002358250.1	PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: shn:Shewana3_2370 MltD domain-containing protein
YP_002358251.1	PFAM: transposase IS4 family protein; KEGG: plu:plu3796 hypothetical protein
YP_002358252.1	KEGG: shw:Sputw3181_2251 intracellular proteinase inhibitor domain protein
YP_002358253.1	PFAM: AsmA family protein; KEGG: shn:Shewana3_2372 AsmA protein
YP_002358254.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_002358255.1	KEGG: shn:Shewana3_2374 hypothetical protein
YP_002358256.1	PFAM: protein of unknown function DUF885; KEGG: shw:Sputw3181_2255 protein of unknown function DUF885
YP_002358257.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shw:Sputw3181_2256 DEAD/DEAH box helicase domain protein
YP_002358258.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: shw:Sputw3181_2257 peptidyl-prolyl cis-trans isomerase, cyclophilin type
YP_002358259.1	KEGG: saz:Sama_2394 cyanophycinase-related exopeptidase-like protein
YP_002358260.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_2393 TonB-dependent receptor
YP_002358261.1	PFAM: C4-dicarboxylate anaerobic carrier; KEGG: saz:Sama_2392 hypothetical protein
YP_002358262.1	TIGRFAM: isoaspartyl dipeptidase; KEGG: saz:Sama_2391 isoaspartyl dipeptidase
YP_002358263.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: sfr:Sfri_2502 protein of unknown function DUF6, transmembrane
YP_002358264.1	KEGG: fph:Fphi_1734 conserved hypothetical lipoprotein
YP_002358265.1	PFAM: FAD dependent oxidoreductase; KEGG: cja:CJA_3096 hypothetical protein
YP_002358266.1	KEGG: cja:CJA_3095 hypothetical protein
YP_002358267.1	KEGG: cja:CJA_3094 hypothetical protein
YP_002358269.1	KEGG: esa:ESA_03456 hypothetical protein
YP_002358270.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: ppr:PBPRB1640 hypothetical protein
YP_002358271.1	PFAM: transposase IS3/IS911 family protein; KEGG: sfr:Sfri_3616 transposase IS3/IS911 family protein
YP_002358273.1	KEGG: shw:Sputw3181_2198 hypothetical protein
YP_002358274.1	KEGG: shw:Sputw3181_2199 hypothetical protein
YP_002358275.1	PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: shw:Sputw3181_2200 resolvase, N-terminal domain
YP_002358276.1	KEGG: shw:Sputw3181_2201 hypothetical protein
YP_002358277.1	PFAM: DNA repair protein RadC; KEGG: shw:Sputw3181_2202 DNA repair protein RadC
YP_002358278.1	KEGG: shw:Sputw3181_2203 hypothetical protein
YP_002358280.1	KEGG: shw:Sputw3181_2206 hypothetical protein
YP_002358281.1	TIGRFAM: phage/plasmid primase, P4 family; PFAM: D5 protein; primase P4; KEGG: shw:Sputw3181_2207 phage / plasmid primase, P4 family
YP_002358283.1	KEGG: shn:Shewana3_2029 hypothetical protein
YP_002358284.1	PFAM: protein of unknown function DUF87; KEGG: shn:Shewana3_2030 hypothetical protein
YP_002358285.1	PFAM: integrase family protein; KEGG: shw:Sputw3181_2211 phage integrase family protein
YP_002358287.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: spc:Sputcn32_1813 methyl-accepting chemotaxis sensory transducer
YP_002358288.1	PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: son:SO_2137 hypothetical protein
YP_002358289.1	PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: shw:Sputw3181_2214 iron-containing alcohol dehydrogenase
YP_002358290.1	KEGG: shw:Sputw3181_2215 hypothetical protein
YP_002358291.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_2216 GCN5-related N-acetyltransferase
YP_002358292.1	PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: shw:Sputw3181_2217 peptidase S9, prolyl oligopeptidase active site domain protein
YP_002358293.1	TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: spc:Sputcn32_1807 tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit
YP_002358294.1	KEGG: shw:Sputw3181_2219 para-aminobenzoate synthase, subunit I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like
YP_002358295.1	PFAM: NUDIX hydrolase; KEGG: shw:Sputw3181_2220 NUDIX hydrolase
YP_002358296.1	KEGG: shm:Shewmr7_2203 hypothetical protein
YP_002358297.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002358298.1	PFAM: Domain of unknown function DUF1801; KEGG: shw:Sputw3181_2102 hypothetical protein
YP_002358299.1	TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: shn:Shewana3_1902 periplasmic nitrate reductase subunit NapC
YP_002358300.1	PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: shw:Sputw3181_2104 nitrate reductase cytochrome c-type subunit (NapB)
YP_002358301.1	periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC
YP_002358302.1	PFAM: NapD family protein; KEGG: shw:Sputw3181_2106 NapD family protein
YP_002358303.1	PFAM: periplasmic nitrate reductase NapE; KEGG: shw:Sputw3181_2107 periplasmic nitrate reductase NapE
YP_002358304.1	KEGG: spc:Sputcn32_1900 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases
YP_002358305.1	PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_2139 putative signal transduction protein with CBS domains
YP_002358306.1	KEGG: hch:HCH_03663 hypothetical protein
YP_002358307.1	PFAM: peptidase T2 asparaginase 2; KEGG: shm:Shewmr7_2140 peptidase T2, asparaginase 2
YP_002358308.1	PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: shw:Sputw3181_2111 surface antigen (D15)
YP_002358309.1	PFAM: protein of unknown function DUF490; KEGG: shw:Sputw3181_2112 protein of unknown function DUF490
YP_002358310.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_002358311.1	KEGG: shw:Sputw3181_2114 hypothetical protein
YP_002358312.1	PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: shw:Sputw3181_2115 protein of unknown function DUF882
YP_002358313.1	PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: spc:Sputcn32_1892 peptidoglycan binding domain-containing protein
YP_002358314.1	necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space
YP_002358315.1	involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan
YP_002358316.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: shm:Shewmr7_2149 periplasmic sensor signal transduction histidine kinase
YP_002358317.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shw:Sputw3181_1929 two component transcriptional regulator, winged helix family
YP_002358318.1	PFAM: ApbE family lipoprotein; KEGG: she:Shewmr4_1826 ApbE family lipoprotein
YP_002358319.1	KEGG: she:Shewmr4_1825 hypothetical protein
YP_002358320.1	KEGG: shw:Sputw3181_1926 lipoprotein, putative
YP_002358321.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: shm:Shewmr7_2154 redoxin domain protein
YP_002358322.1	KEGG: son:SO_2099 quinone-reactive Ni/Fe hydrogenase, small subunit precursor; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit
YP_002358323.1	PFAM: nickel-dependent hydrogenase large subunit; KEGG: son:SO_2098 quinone-reactive Ni/Fe hydrogenase, large subunit
YP_002358324.1	TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: shn:Shewana3_1878 Ni/Fe-hydrogenase, b-type cytochrome subunit
YP_002358325.1	TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: shn:Shewana3_1877 hydrogenase expression/formation protein
YP_002358326.1	KEGG: shw:Sputw3181_1920 hypothetical protein
YP_002358327.1	TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: shw:Sputw3181_1919 (NiFe) hydrogenase maturation protein HypF
YP_002358328.1	KEGG: lsp:Bsph_3258 hypothetical protein
YP_002358329.1	TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: shw:Sputw3181_2173 hydrogenase accessory protein HypB
YP_002358330.1	TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: shw:Sputw3181_2174 hydrogenase assembly chaperone HypC/HupF
YP_002358331.1	TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: shw:Sputw3181_2175 hydrogenase expression/formation protein HypD
YP_002358332.1	TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: shw:Sputw3181_2176 hydrogenase expression/formation protein HypE
YP_002358333.1	TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: shw:Sputw3181_2177 hydrogenase nickel insertion protein HypA
YP_002358334.1	Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA
YP_002358335.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_002358336.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_002358337.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_002358338.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shw:Sputw3181_2182 methyl-accepting chemotaxis sensory transducer
YP_002358339.1	PFAM: protein of unknown function UPF0153; KEGG: shw:Sputw3181_2258 hypothetical protein
YP_002358340.1	TIGRFAM: lytic murein transglycosylase; KEGG: shm:Shewmr7_2248 putative transglycosylase
YP_002358341.1	PFAM: protein of unknown function DUF709; KEGG: shm:Shewmr7_2249 protein of unknown function DUF709
YP_002358342.1	blocks the formation of polar Z-ring septums
YP_002358343.1	TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: shw:Sputw3181_2261 septum site-determining protein MinD
YP_002358344.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_002358345.1	TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: spc:Sputcn32_1762 ribonuclease D
YP_002358346.1	Activates fatty acids by binding to coenzyme A
YP_002358347.1	PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: shm:Shewmr7_2255 alpha/beta hydrolase fold
YP_002358348.1	KEGG: spc:Sputcn32_1759 hypothetical protein
YP_002358349.1	KEGG: she:Shewmr4_2180 hypothetical protein
YP_002358350.1	KEGG: shw:Sputw3181_2268 hypothetical protein
YP_002358351.1	PFAM: peptidase M22 glycoprotease; KEGG: shw:Sputw3181_2269 peptidase M22, glycoprotease
YP_002358352.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_002358353.1	this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae
YP_002358354.1	PFAM: 2OG-Fe(II) oxygenase; KEGG: spc:Sputcn32_1753 2OG-Fe(II) oxygenase
YP_002358355.1	essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc)
YP_002358356.1	PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: spc:Sputcn32_1749 protein tyrosine phosphatase
YP_002358357.1	catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA
YP_002358358.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_2279 transcriptional regulator, LysR family
YP_002358359.1	PFAM: protein of unknown function DUF413; KEGG: shw:Sputw3181_2280 hypothetical protein
YP_002358360.1	TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: shw:Sputw3181_2281 alpha-L-glutamate ligases, RimK family
YP_002358361.1	KEGG: shm:Shewmr7_2273 hypothetical protein
YP_002358362.1	PFAM: peptidase M28; KEGG: she:Shewmr4_2197 peptidase M28
YP_002358363.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shw:Sputw3181_2284 diguanylate cyclase
YP_002358364.1	TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: spc:Sputcn32_1740 sortase family protein
YP_002358365.1	KEGG: shw:Sputw3181_2286 LPXTG-motif cell wall anchor domain; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: von Willebrand factor type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa
YP_002358366.1	PFAM: OmpA/MotB domain protein; KEGG: shn:Shewana3_2411 OmpA/MotB domain-containing protein
YP_002358367.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shw:Sputw3181_2287 two component transcriptional regulator, winged helix family
YP_002358368.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: shn:Shewana3_2413 ATPase domain-containing protein
YP_002358369.1	catalyzes the formation of L-homocysteine from cystathionine
YP_002358370.1	PFAM: CreA family protein; KEGG: shw:Sputw3181_2290 CreA family protein
YP_002358371.1	KEGG: shw:Sputw3181_2291 putative chaperone
YP_002358372.1	PFAM: Polyphosphate kinase; KEGG: shw:Sputw3181_2292 polyphosphate kinase
YP_002358373.1	PFAM: Ppx/GppA phosphatase; KEGG: shn:Shewana3_2418 Ppx/GppA phosphatase
YP_002358374.1	PFAM: heat shock protein DnaJ domain protein; KEGG: shw:Sputw3181_2394 heat shock protein DnaJ domain protein
YP_002358375.1	KEGG: shw:Sputw3181_2395 hypothetical protein
YP_002358376.1	KEGG: shw:Sputw3181_2396 hypothetical protein
YP_002358377.1	KEGG: shw:Sputw3181_2397 hypothetical protein
YP_002358378.1	KEGG: son:SO_0894 hypothetical protein
YP_002358379.1	KEGG: lil:LA1000 hypothetical protein
YP_002358380.1	KEGG: hch:HCH_02017 hypothetical protein
YP_002358384.1	PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: shw:Sputw3181_2400 endonuclease/exonuclease/phosphatase
YP_002358385.1	KEGG: spc:Sputcn32_1621 hypothetical protein
YP_002358386.1	KEGG: spc:Sputcn32_1620 hypothetical protein
YP_002358387.1	KEGG: spc:Sputcn32_1619 hypothetical protein
YP_002358388.1	KEGG: shw:Sputw3181_2404 hypothetical protein
YP_002358389.1	KEGG: shw:Sputw3181_2405 hypothetical protein
YP_002358390.1	KEGG: she:Shewmr4_1529 hypothetical protein
YP_002358391.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_2407 GCN5-related N-acetyltransferase
YP_002358392.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1594 GCN5-related N-acetyltransferase
YP_002358393.1	SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: shm:Shewmr7_1593 prolyl 4-hydroxylase, alpha subunit
YP_002358394.1	PFAM: GCN5-related N-acetyltransferase; KEGG: spc:Sputcn32_1666 GCN5-related N-acetyltransferase
YP_002358395.1	PFAM: nitroreductase; KEGG: spc:Sputcn32_1665 nitroreductase
YP_002358396.1	PFAM: DoxX family protein; KEGG: shn:Shewana3_2495 DoxX family protein
YP_002358397.1	KEGG: spc:Sputcn32_1664 hypothetical protein
YP_002358398.1	PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: spc:Sputcn32_1663 aminoglycoside phosphotransferase
YP_002358399.1	TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: shn:Shewana3_2498 nicotinamide mononucleotide transporter PnuC
YP_002358400.1	KEGG: spc:Sputcn32_1661 hypothetical protein
YP_002358401.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: she:Shewmr4_2310 TonB-dependent receptor
YP_002358402.1	PFAM: protein of unknown function DUF1425; KEGG: shw:Sputw3181_2370 protein of unknown function DUF1425
YP_002358403.1	PFAM: thioesterase superfamily protein; KEGG: shw:Sputw3181_2371 uncharacterized domain 1
YP_002358404.1	PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2383 uncharacterized domain 1
YP_002358405.1	PFAM: histidine triad (HIT) protein; KEGG: shn:Shewana3_2507 histidine triad (HIT) protein
YP_002358406.1	PFAM: peptidase M61 domain protein; KEGG: shw:Sputw3181_2373 peptidase M61 domain protein
YP_002358407.1	PFAM: regulatory protein LuxR; KEGG: shn:Shewana3_2509 LuxR family transcriptional regulator
YP_002358408.1	PFAM: cytochrome B561; KEGG: shn:Shewana3_2510 cytochrome b561
YP_002358409.1	KEGG: shn:Shewana3_2511 cytochrome c3
YP_002358410.1	PFAM: protein of unknown function UPF0118; KEGG: shw:Sputw3181_2328 protein of unknown function UPF0118
YP_002358411.1	PFAM: SirA family protein; KEGG: shw:Sputw3181_2329 SirA family protein
YP_002358412.1	PFAM: peptidase M48 Ste24p; KEGG: she:Shewmr4_2347 peptidase M48, Ste24p
YP_002358413.1	TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: shn:Shewana3_1648 arsenate reductase
YP_002358414.1	KEGG: son:SO_2872 hypothetical protein
YP_002358415.1	KEGG: spc:Sputcn32_1692 hypothetical protein
YP_002358416.1	controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP
YP_002358417.1	KEGG: spc:Sputcn32_1690 hypothetical protein
YP_002358418.1	TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: shw:Sputw3181_2336 uracil-xanthine permease
YP_002358419.1	TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: shw:Sputw3181_2337 glutaredoxin-like protein
YP_002358420.1	PFAM: manganese and iron superoxide dismutase; KEGG: shn:Shewana3_1639 manganese and iron superoxide dismutase
YP_002358421.1	PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: shm:Shewmr7_1646 putative serine protein kinase, PrkA
YP_002358422.1	PFAM: protein of unknown function DUF444; KEGG: shm:Shewmr7_1645 hypothetical protein
YP_002358423.1	PFAM: SpoVR family protein; KEGG: shm:Shewmr7_1644 hypothetical protein
YP_002358424.1	Multifunctional regulator of fatty acid metabolism
YP_002358425.1	involved in regulation of intracellular pH under alkaline conditions
YP_002358426.1	disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein
YP_002358427.1	KEGG: spc:Sputcn32_1680 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein
YP_002358428.1	KEGG: spc:Sputcn32_2331 hypothetical protein
YP_002358429.1	KEGG: shm:Shewmr7_1637 hypothetical protein
YP_002358430.1	PFAM: YceI family protein; KEGG: shn:Shewana3_1628 YceI family protein
YP_002358431.1	PFAM: protein of unknown function DUF188; KEGG: shw:Sputw3181_2376 protein of unknown function DUF188
YP_002358432.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate
YP_002358433.1	PFAM: S-adenosylmethionine decarboxylase; KEGG: shw:Sputw3181_2378 adenosylmethionine decarboxylase
YP_002358434.1	catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis
YP_002358435.1	KEGG: shm:Shewmr7_1631 hypothetical protein
YP_002358436.1	KEGG: shw:Sputw3181_2380 hypothetical protein
YP_002358437.1	PFAM: protein of unknown function DUF480; KEGG: shw:Sputw3181_2381 protein of unknown function DUF480
YP_002358438.1	KEGG: shw:Sputw3181_2382 hypothetical protein
YP_002358439.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_2383 ABC transporter related
YP_002358440.1	PFAM: histone family protein DNA-binding protein; KEGG: she:Shewmr4_1550 histone family protein DNA-binding protein
YP_002358441.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_002358442.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shw:Sputw3181_1665 biotin biosynthesis protein BioC
YP_002358443.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aminotransferase class I and II; aminotransferase class-III; KEGG: shw:Sputw3181_1664 8-amino-7-oxononanoate synthase
YP_002358444.1	KEGG: shw:Sputw3181_1663 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB
YP_002358445.1	TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: shw:Sputw3181_1662 adenosylmethionine-8-amino-7-oxononanoate aminotransferase
YP_002358447.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: shn:Shewana3_2521 methyl-accepting chemotaxis sensory transducer
YP_002358448.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: shm:Shewmr7_2433 multi-sensor hybrid histidine kinase
YP_002358449.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_002358450.1	PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shw:Sputw3181_1658 type III restriction enzyme, res subunit
YP_002358451.1	functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase
YP_002358452.1	PFAM: porin; KEGG: shm:Shewmr7_2437 hypothetical protein
YP_002358453.1	TIGRFAM: tol-pal system protein YbgF; KEGG: shw:Sputw3181_2413 tetratricopeptide domain protein
YP_002358454.1	TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: shw:Sputw3181_2414 OmpA domain protein
YP_002358455.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_002358456.1	TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: shn:Shewana3_2532 TolA family protein
YP_002358457.1	TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: shw:Sputw3181_2417 biopolymer transport protein ExbD/TolR
YP_002358458.1	TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: shw:Sputw3181_2418 MotA/TolQ/ExbB proton channel
YP_002358459.1	TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: shw:Sputw3181_2419 4-hydroxybenzoyl-CoA thioesterase
YP_002358460.1	PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: shm:Shewmr7_2445 Prolyl oligopeptidase. Serine peptidase. MEROPS family S09A
YP_002358461.1	PFAM: OmpA/MotB domain protein; KEGG: shm:Shewmr7_2446 OmpA/MotB domain protein
YP_002358462.1	Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A)
YP_002358463.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shw:Sputw3181_2423 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_002358464.1	PFAM: Gluconate transporter; Citrate transporter; Na+/H+ antiporter NhaC; KEGG: shn:Shewana3_2542 Na+/H+ antiporter NhaC
YP_002358465.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_002358466.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_002358467.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_002358468.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO_2762 UMP phosphatase
YP_002358469.1	KEGG: son:SO_4497 ISSod5, transposase
YP_002358470.1	KEGG: son:SO_2763 hypothetical protein
YP_002358472.1	PFAM: peptidase M28; KEGG: shw:Sputw3181_2429 peptidase M28
YP_002358474.1	functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP
YP_002358475.1	PFAM: Patatin; KEGG: spc:Sputcn32_1591 patatin
YP_002358478.1	PFAM: transposase IS4 family protein; KEGG: plu:plu3796 hypothetical protein
YP_002358479.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shw:Sputw3181_2432 TonB-dependent siderophore receptor
YP_002358480.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: shw:Sputw3181_2433 acyl-CoA dehydrogenase domain protein
YP_002358481.1	PFAM: Aldose 1-epimerase; KEGG: spc:Sputcn32_1588 aldose 1-epimerase
YP_002358482.1	PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: shw:Sputw3181_2435 6-phosphogluconate dehydrogenase, NAD-binding
YP_002358483.1	PFAM: thioesterase superfamily protein; KEGG: shw:Sputw3181_2436 thioesterase superfamily protein
YP_002358484.1	KEGG: shn:Shewana3_2556 hypothetical protein
YP_002358485.1	TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: shw:Sputw3181_2438 beta-ketoacyl synthase
YP_002358486.1	carries the fatty acid chain in fatty acid biosynthesis
YP_002358487.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: shw:Sputw3181_2440 3-oxoacyl-(acyl-carrier-protein) reductase
YP_002358488.1	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: shw:Sputw3181_2441 malonyl CoA-acyl carrier protein transacylase
YP_002358489.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_002358490.1	PFAM: Carbohydrate-binding family V/XII; Protein of unknown function DUF1983; KEGG: shw:Sputw3181_2456 carbohydrate-binding family V/XII
YP_002358491.1	PFAM: lambda tail assembly I; KEGG: son:SO_2941 prophage LambdaSo, tail assembly protein I
YP_002358492.1	PFAM: NLP/P60 protein; SMART: Mov34/MPN/PAD-1 family protein; KEGG: shw:Sputw3181_2462 NLP/P60 protein
YP_002358493.1	TIGRFAM: phage minor tail protein L; PFAM: minor tail protein L; KEGG: shw:Sputw3181_2463 phage minor tail protein L
YP_002358494.1	KEGG: son:SO_2950 hypothetical protein
YP_002358495.1	KEGG: son:SO_2951 hypothetical protein
YP_002358496.1	PFAM: minor tail family protein; KEGG: shw:Sputw3181_2468 phage minor tail family protein
YP_002358497.1	TIGRFAM: phage tail tape measure protein, lambda family; PFAM: Prophage tail length tape measure; KEGG: shw:Sputw3181_2470 phage tail tape measure protein, lambda family
YP_002358498.1	KEGG: shw:Sputw3181_2471 hypothetical protein
YP_002358499.1	KEGG: shw:Sputw3181_2472 hypothetical protein
YP_002358500.1	KEGG: shw:Sputw3181_2473 prophage LambdaSo, major tail protein V, putative
YP_002358501.1	KEGG: shw:Sputw3181_2474 hypothetical protein
YP_002358502.1	TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: shw:Sputw3181_2475 phage protein, HK97 GP10 family
YP_002358503.1	TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: shw:Sputw3181_2476 phage head-tail adaptor, putative
YP_002358504.1	KEGG: shw:Sputw3181_2477 hypothetical protein
YP_002358505.1	KEGG: shw:Sputw3181_2478 hypothetical protein
YP_002358506.1	TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: shw:Sputw3181_2479 phage major capsid protein, HK97 family
YP_002358507.1	PFAM: peptidase S14 ClpP; KEGG: shw:Sputw3181_2480 peptidase S14, ClpP
YP_002358508.1	TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: son:SO_2965 prophage LambdaSo, HK97 family portal protein
YP_002358509.1	KEGG: son:SO_2966 hypothetical protein
YP_002358510.1	PFAM: Terminase; KEGG: son:SO_2967 phage terminase large subunit
YP_002358511.1	TIGRFAM: phage terminase, small subunit, , P27 family; PFAM: terminase small subunit putative P27; KEGG: son:SO_2968 phage terminase small subunit
YP_002358512.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: shw:Sputw3181_2485 HNH endonuclease
YP_002358513.1	KEGG: shw:Sputw3181_2486 hypothetical protein
YP_002358514.1	KEGG: shw:Sputw3181_2487 hypothetical protein
YP_002358515.1	KEGG: shw:Sputw3181_2488 hypothetical protein
YP_002358517.1	KEGG: shw:Sputw3181_2489 prophage LambdaSo, lysozyme, putative
YP_002358519.1	PFAM: UMUC domain protein DNA-repair protein; KEGG: she:Shewmr4_3210 DNA-directed DNA polymerase
YP_002358520.1	PFAM: peptidase S24 and S26 domain protein; KEGG: sdn:Sden_3236 peptidase S24, S26A and S26B
YP_002358521.1	KEGG: csa:Csal_2908 hypothetical protein
YP_002358522.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002358523.1	PFAM: integrase family protein; KEGG: shw:Sputw3181_2495 phage integrase family protein
YP_002358524.1	KEGG: son:SO_2979 hypothetical protein
YP_002358525.1	TIGRFAM: uncharacterized phage protein; KEGG: shw:Sputw3181_2497 uncharacterized phage protein
YP_002358526.1	KEGG: shw:Sputw3181_2498 hypothetical protein
YP_002358527.1	KEGG: son:SO_2982 hypothetical protein
YP_002358528.1	KEGG: shw:Sputw3181_2500 hypothetical protein
YP_002358529.1	KEGG: shw:Sputw3181_2501 hypothetical protein
YP_002358530.1	TIGRFAM: phage replication protein O; PFAM: replication protein O domain protein; KEGG: shw:Sputw3181_2502 phage replication protein O
YP_002358531.1	KEGG: shw:Sputw3181_2503 hypothetical protein
YP_002358532.1	KEGG: shw:Sputw3181_2504 hypothetical protein
YP_002358533.1	KEGG: shw:Sputw3181_2505 hypothetical protein
YP_002358534.1	KEGG: sdn:Sden_3267 hypothetical protein
YP_002358535.1	PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: son:SO_2990 prophage LambdaSo, Cro/CI family transcriptional regulator
YP_002358536.1	KEGG: shw:Sputw3181_2508 hypothetical protein
YP_002358537.1	KEGG: ppf:Pput_3368 hypothetical protein
YP_002358538.1	KEGG: shw:Sputw3181_2509 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease
YP_002358539.1	KEGG: abc:ACICU_01010 hypothetical protein
YP_002358541.1	PFAM: lambda tail assembly I; KEGG: shw:Sputw3181_2510 bacteriophage lambda tail assembly I
YP_002358544.1	KEGG: son:SO_2995 hypothetical protein
YP_002358545.1	KEGG: shw:Sputw3181_2512 hypothetical protein
YP_002358546.1	KEGG: shw:Sputw3181_2513 hypothetical protein
YP_002358547.1	KEGG: sdn:Sden_3274 hypothetical protein
YP_002358548.1	KEGG: shw:Sputw3181_2515 hypothetical protein
YP_002358549.1	KEGG: son:SO_3000 hypothetical protein
YP_002358551.1	KEGG: ppu:PP_3911 hypothetical protein
YP_002358552.1	KEGG: son:SO_3003 hypothetical protein
YP_002358553.1	PFAM: DNA N-6-adenine-methyltransferase; KEGG: shw:Sputw3181_2522 DNA N-6-adenine-methyltransferase
YP_002358554.1	KEGG: ypi:YpsIP31758_B0042 hypothetical protein
YP_002358555.1	PFAM: C-5 cytosine-specific DNA methylase; KEGG: shw:Sputw3181_2523 C-5 cytosine-specific DNA methylase
YP_002358556.1	KEGG: vfm:VFMJ11_B0157 hypothetical protein
YP_002358557.1	KEGG: shw:Sputw3181_2526 hypothetical protein
YP_002358563.1	PFAM: integrase family protein; KEGG: stm:STM2636 integrase-like protein
YP_002358564.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_002358565.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_002358566.1	PFAM: protein of unknown function DUF177; KEGG: shw:Sputw3181_2445 hypothetical protein
YP_002358567.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: shw:Sputw3181_2446 maf protein
YP_002358568.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shw:Sputw3181_2447 HAD-superfamily hydrolase, subfamily IA, variant 3
YP_002358569.1	KEGG: shw:Sputw3181_2448 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase
YP_002358570.1	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease E and G; KEGG: shw:Sputw3181_2449 ribonuclease, Rne/Rng family
YP_002358571.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: shn:Shewana3_2568 sulphate transporter
YP_002358572.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: shw:Sputw3181_2450 putative cold-shock DNA-binding domain protein
YP_002358573.1	methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth
YP_002358574.1	KEGG: she:Shewmr4_2409 hypothetical protein
YP_002358575.1	Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates
YP_002358576.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_002358577.1	PFAM: protein of unknown function DUF1289; KEGG: shw:Sputw3181_2532 protein of unknown function DUF1289
YP_002358578.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: shw:Sputw3181_2533 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002358579.1	KEGG: she:Shewmr4_2414 hypothetical protein
YP_002358580.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO_2795 glyoxalase family protein
YP_002358581.1	PFAM: protein of unknown function DUF748; KEGG: shw:Sputw3181_2536 protein of unknown function DUF748
YP_002358582.1	PFAM: glutaredoxin; Glutathione S-transferase domain; KEGG: shn:Shewana3_2579 glutaredoxin
YP_002358583.1	KEGG: she:Shewmr4_2418 hypothetical protein
YP_002358584.1	KEGG: she:Shewmr4_2419 putative lipoprotein
YP_002358585.1	PFAM: protein of unknown function DUF343; KEGG: shn:Shewana3_2582 hypothetical protein
YP_002358586.1	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_002358587.1	KEGG: shw:Sputw3181_2542 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase
YP_002358588.1	TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: shw:Sputw3181_2543 DNA internalization-related competence protein ComEC/Rec2
YP_002358589.1	KEGG: son:SO_2804 hypothetical protein
YP_002358590.1	PFAM: NnrS family protein; KEGG: shn:Shewana3_2587 NnrS family protein
YP_002358591.1	PFAM: phosphate-starvation-inducible E; KEGG: shn:Shewana3_2588 phosphate-starvation-inducible E
YP_002358592.1	PFAM: type IV pilus assembly PilZ; KEGG: son:SO_2807 hypothetical protein
YP_002358593.1	KEGG: shn:Shewana3_2590 hypothetical protein
YP_002358594.1	KEGG: shm:Shewmr7_2499 RepA domain protein
YP_002358595.1	KEGG: shm:Shewmr7_2500 hypothetical protein
YP_002358597.1	PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: shn:Shewana3_2593 signal transduction histidine kinase, LytS
YP_002358598.1	unknown function; when overproduced it confers drug-resistance
YP_002358599.1	PFAM: carbon starvation protein CstA; KEGG: shw:Sputw3181_2552 carbon starvation protein CstA
YP_002358600.1	KEGG: shw:Sputw3181_2553 hypothetical protein
YP_002358601.1	KEGG: shw:Sputw3181_2554 hypothetical protein
YP_002358602.1	KEGG: shm:Shewmr7_2507 hypothetical protein
YP_002358603.1	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate
YP_002358604.1	KEGG: shw:Sputw3181_2557 hypothetical protein
YP_002358605.1	activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions
YP_002358606.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_002358607.1	KEGG: shw:Sputw3181_2560 hypothetical protein
YP_002358608.1	PFAM: regulatory protein MarR; KEGG: spl:Spea_2621 transcriptional regulator, MarR family
YP_002358609.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: spl:Spea_2622 alcohol dehydrogenase zinc-binding domain protein
YP_002358610.1	PFAM: Patatin; KEGG: shw:Sputw3181_2561 patatin
YP_002358611.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shw:Sputw3181_2562 DEAD/DEAH box helicase domain protein
YP_002358612.1	KEGG: shw:Sputw3181_2563 hypothetical protein
YP_002358613.1	PFAM: protein of unknown function DUF45; KEGG: shw:Sputw3181_2564 protein of unknown function DUF45
YP_002358614.1	KEGG: shn:Shewana3_2609 hypothetical protein
YP_002358615.1	PFAM: Peptidase M23; KEGG: shw:Sputw3181_2566 peptidase M23B
YP_002358616.1	PFAM: SMC domain protein; KEGG: spc:Sputcn32_1532 SMC domain-containing protein
YP_002358617.1	TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: shw:Sputw3181_2568 nuclease SbcCD, D subunit
YP_002358618.1	PFAM: protein of unknown function DUF81; KEGG: shw:Sputw3181_2569 protein of unknown function DUF81
YP_002358619.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_2614 LysR family transcriptional regulator
YP_002358620.1	PFAM: protein of unknown function DUF1260; KEGG: spc:Sputcn32_1528 hypothetical protein
YP_002358621.1	KEGG: shw:Sputw3181_2573 RNA-binding S4 domain protein
YP_002358622.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_2574 GCN5-related N-acetyltransferase
YP_002358623.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: shw:Sputw3181_2575 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_002358624.1	PFAM: protein of unknown function DUF885; KEGG: shn:Shewana3_2619 hypothetical protein
YP_002358625.1	PFAM: GGDEF domain containing protein; KEGG: son:SO_1830 GGDEF domain-containing protein
YP_002358626.1	SMART: Tetratricopeptide domain protein; KEGG: shn:Shewana3_2621 TPR repeat-containing protein
YP_002358627.1	TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: shw:Sputw3181_2579 TonB family protein
YP_002358628.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: shn:Shewana3_2623 biopolymer transport protein ExbD/TolR
YP_002358629.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: shw:Sputw3181_2581 MotA/TolQ/ExbB proton channel
YP_002358630.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: shn:Shewana3_2625 MotA/TolQ/ExbB proton channel
YP_002358631.1	KEGG: shw:Sputw3181_2583 hypothetical protein
YP_002358632.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: son:SO_1822 TonB-dependent receptor, putative
YP_002358633.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: son:SO_1822 TonB-dependent receptor, putative
YP_002358634.1	PFAM: porin Gram-negative type; KEGG: shw:Sputw3181_2585 porin, gram-negative type
YP_002358635.1	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C
YP_002358636.1	helicase involved in DNA repair and perhaps also replication
YP_002358637.1	PFAM: protein of unknown function DUF81; KEGG: shw:Sputw3181_2588 protein of unknown function DUF81
YP_002358638.1	KEGG: shw:Sputw3181_2589 primosomal replication protein N'', putative
YP_002358639.1	KEGG: shn:Shewana3_2633 hypothetical protein
YP_002358640.1	PFAM: histone deacetylase superfamily; KEGG: she:Shewmr4_2474 histone deacetylase superfamily protein
YP_002358641.1	KEGG: shw:Sputw3181_2592 hypothetical protein
YP_002358642.1	TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: son:SO_1813 DNA-binding protein, putative
YP_002358643.1	KEGG: shw:Sputw3181_2594 methionine gamma-lyase; TIGRFAM: methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_002358644.1	PFAM: conserved hypothetical protein; KEGG: shw:Sputw3181_2595 hypothetical protein
YP_002358645.1	PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: spc:Sputcn32_1505 protein of unknown function DUF463, YcjX family protein
YP_002358646.1	TIGRFAM: phage shock protein C; PFAM: PspC domain protein; KEGG: shw:Sputw3181_2597 phage shock protein C, PspC
YP_002358647.1	acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding
YP_002358648.1	TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: shw:Sputw3181_2599 phage shock protein A, PspA
YP_002358649.1	KEGG: shw:Sputw3181_2600 transcriptional regulator, fis family; TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_002358650.1	PFAM: extracellular solute-binding protein family 5; KEGG: spc:Sputcn32_1500 extracellular solute-binding protein
YP_002358651.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shn:Shewana3_2651 binding-protein-dependent transport systems inner membrane component
YP_002358652.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shn:Shewana3_2652 binding-protein-dependent transport systems inner membrane component
YP_002358653.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: son:SO_1802 peptide ABC transporter, ATP-binding protein
YP_002358654.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_2605 ABC transporter related
YP_002358655.1	enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity
YP_002358656.1	PFAM: TOBE domain protein; KEGG: shn:Shewana3_2656 molybdenum-pterin binding
YP_002358657.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: she:Shewmr4_2491 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_002358658.1	PFAM: histone family protein DNA-binding protein; KEGG: son:SO_1797 HU family DNA-binding protein
YP_002358659.1	KEGG: shw:Sputw3181_2609 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_002358660.1	binds and unfolds substrates as part of the ClpXP protease
YP_002358661.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_002358662.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_002358663.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_002358664.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_002358665.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: shw:Sputw3181_2615 peptidyl-prolyl cis-trans isomerase, cyclophilin type
YP_002358666.1	catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine
YP_002358667.1	PFAM: tRNA-hydroxylase; KEGG: shn:Shewana3_2667 tRNA hydroxylase
YP_002358668.1	PFAM: protein of unknown function DUF1282; KEGG: she:Shewmr4_2502 hypothetical protein
YP_002358669.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002358670.1	TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; Miro domain protein; KEGG: shm:Shewmr7_2572 ferrous iron transport protein B
YP_002358671.1	PFAM: FeoA family protein; KEGG: shw:Sputw3181_2621 FeoA family protein
YP_002358672.1	TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: shn:Shewana3_2672 cytochrome c family protein
YP_002358673.1	KEGG: she:Shewmr4_2507 outer membrane protein, putative
YP_002358674.1	KEGG: shn:Shewana3_2674 decaheme cytochrome c MtrF
YP_002358675.1	KEGG: shw:Sputw3181_2622 hypothetical protein
YP_002358676.1	KEGG: shn:Shewana3_2676 decaheme cytochrome c
YP_002358677.1	TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: son:SO_1777 decaheme cytochrome c MtrA
YP_002358678.1	KEGG: shw:Sputw3181_2625 outer membrane protein precursor MtrB
YP_002358679.1	KEGG: shw:Sputw3181_2626 hypothetical protein
YP_002358680.1	KEGG: spc:Sputcn32_1474 phage SPO1 DNA polymerase domain-containing protein
YP_002358681.1	PFAM: sugar diacid recognition domain protein; KEGG: she:Shewmr4_2516 CdaR family transcriptional regulator
YP_002358682.1	PFAM: Catalase domain protein; KEGG: shw:Sputw3181_2629 catalase domain protein
YP_002358683.1	PFAM: Gluconate transporter; Citrate transporter; KEGG: shm:Shewmr7_2586 gluconate transporter
YP_002358684.1	PFAM: glycerate kinase; KEGG: spc:Sputcn32_1470 glycerate kinase
YP_002358685.1	PFAM: Pyridoxal-dependent decarboxylase; KEGG: shw:Sputw3181_2632 pyridoxal-dependent decarboxylase
YP_002358686.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: spl:Spea_3228 HAD-superfamily hydrolase, subfamily IB (PSPase-like)
YP_002358687.1	KEGG: shw:Sputw3181_2635 hypothetical protein
YP_002358688.1	KEGG: shw:Sputw3181_2636 hypothetical protein
YP_002358689.1	KEGG: cbb:CLD_3246 hypothetical protein
YP_002358690.1	KEGG: spc:Sputcn32_1463 hypothetical protein
YP_002358691.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: spc:Sputcn32_1461 hexapaptide repeat-containing transferase
YP_002358692.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: spc:Sputcn32_1460 AraC family transcriptional regulator
YP_002358693.1	PFAM: AzlC family protein; KEGG: shw:Sputw3181_2643 AzlC family protein
YP_002358694.1	PFAM: branched-chain amino acid transport; KEGG: shw:Sputw3181_2644 branched-chain amino acid transport
YP_002358695.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002358696.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: shw:Sputw3181_2645 helix-turn-helix, type 11 domain protein
YP_002358697.1	PFAM: transcription activator effector binding; KEGG: shw:Sputw3181_2646 transcription activator, effector binding
YP_002358698.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spc:Sputcn32_1455 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002358699.1	PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: shw:Sputw3181_2648 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
YP_002358700.1	KEGG: spc:Sputcn32_1453 hypothetical protein
YP_002358701.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spc:Sputcn32_1452 ABC transporter related
YP_002358702.1	KEGG: shn:Shewana3_2709 hypothetical protein
YP_002358703.1	PFAM: Integral membrane protein TerC; KEGG: son:SO_1747 hypothetical protein
YP_002358704.1	KEGG: swd:Swoo_3155 hypothetical protein
YP_002358705.1	KEGG: sdn:Sden_0945 amino acid/peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1
YP_002358706.1	KEGG: son:SO_1746 hypothetical protein
YP_002358707.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: spc:Sputcn32_1448 3-beta hydroxysteroid dehydrogenase/isomerase
YP_002358708.1	Catalyzes the specific recognition and activation of amino acids during peptide synthesis
YP_002358709.1	PFAM: alpha/beta hydrolase fold; KEGG: shw:Sputw3181_2653 alpha/beta hydrolase fold
YP_002358710.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_002358711.1	KEGG: shw:Sputw3181_2655 hypothetical protein
YP_002358712.1	PFAM: protein of unknown function DUF1289; KEGG: shm:Shewmr7_2617 protein of unknown function DUF1289
YP_002358713.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: shw:Sputw3181_2657 hypothetical protein
YP_002358714.1	TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: shw:Sputw3181_2658 choline/carnitine/betaine transporter
YP_002358715.1	PFAM: protein of unknown function DUF502; KEGG: shm:Shewmr7_2620 hypothetical protein
YP_002358716.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: shw:Sputw3181_2660 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002358717.1	KEGG: swd:Swoo_3203 hypothetical protein
YP_002358718.1	KEGG: cps:CPS_2750 hypothetical protein
YP_002358722.1	KEGG: spc:Sputcn32_0958 hypothetical protein
YP_002358723.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRA1972 acetyltransferase
YP_002358724.1	KEGG: she:Shewmr4_2556 hypothetical protein
YP_002358725.1	regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon
YP_002358726.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_002358727.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: she:Shewmr4_2559 phosphate ABC transporter, inner membrane subunit PstA
YP_002358728.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shw:Sputw3181_2665 binding-protein-dependent transport systems inner membrane component
YP_002358729.1	PFAM: amino acid-binding ACT domain protein; KEGG: spc:Sputcn32_1433 amino acid-binding ACT domain-containing protein
YP_002358730.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: she:Shewmr4_2562 hypothetical protein
YP_002358731.1	PFAM: putative esterase; KEGG: shn:Shewana3_2737 putative esterase
YP_002358732.1	KEGG: shw:Sputw3181_2667 hypothetical protein
YP_002358733.1	KEGG: she:Shewmr4_2566 hypothetical protein
YP_002358734.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shw:Sputw3181_2671 lysine exporter protein (LysE/YggA)
YP_002358735.1	PFAM: protein of unknown function DUF1415; KEGG: spc:Sputcn32_1428 hypothetical protein
YP_002358736.1	KEGG: ppr:PBPRA1313 hypothetical protein
YP_002358737.1	PFAM: beta-lactamase; KEGG: sus:Acid_1314 beta-lactamase
YP_002358739.1	KEGG: shn:Shewana3_2746 hypothetical protein
YP_002358740.1	PFAM: acetyl-CoA hydrolase/transferase; KEGG: shw:Sputw3181_2677 acetyl-CoA hydrolase/transferase
YP_002358741.1	PFAM: ABC-2 type transporter; KEGG: spc:Sputcn32_1422 ABC-2 type transporter
YP_002358742.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spc:Sputcn32_1421 ABC transporter related
YP_002358743.1	PFAM: secretion protein HlyD family protein; KEGG: shw:Sputw3181_2680 secretion protein HlyD family protein
YP_002358744.1	PFAM: regulatory protein TetR; KEGG: shn:Shewana3_2751 TetR family transcriptional regulator
YP_002358745.1	KEGG: shw:Sputw3181_2682 hypothetical protein
YP_002358746.1	KEGG: shn:Shewana3_2753 hypothetical protein
YP_002358747.1	KEGG: spc:Sputcn32_1416 hypothetical protein
YP_002358748.1	PFAM: transcriptional regulator domain protein; KEGG: shm:Shewmr7_2647 lysine decarboxylase transcriptional regulator, CadC
YP_002358749.1	PFAM: Domain of unknown function DUF1888; KEGG: shm:Shewmr7_2648 hypothetical protein
YP_002358750.1	PFAM: protein of unknown function DUF1568; KEGG: son:SO_1697 hypothetical protein
YP_002358751.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shw:Sputw3181_2689 diguanylate cyclase with PAS/PAC sensor
YP_002358752.1	PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: shw:Sputw3181_2690 FAD linked oxidase domain protein
YP_002358753.1	PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: son:SO_1691 lipoprotein Blc
YP_002358754.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_2692 ABC transporter related
YP_002358755.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: spc:Sputcn32_1408 copper-translocating P-type ATPase
YP_002358756.1	PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: shm:Shewmr7_2655 transcriptional regulator, MerR family
YP_002358757.1	PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: spc:Sputcn32_1406 peptidase S9 prolyl oligopeptidase
YP_002358758.1	KEGG: shw:Sputw3181_2696 hypothetical protein
YP_002358759.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002358760.1	KEGG: shw:Sputw3181_2699 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding
YP_002358761.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: spc:Sputcn32_1401 enoyl-CoA hydratase/isomerase
YP_002358762.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002358763.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: shw:Sputw3181_2702 acyl-CoA dehydrogenase domain protein
YP_002358764.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: spc:Sputcn32_1398 methylmalonate-semialdehyde dehydrogenase
YP_002358765.1	KEGG: spc:Sputcn32_1397 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase
YP_002358766.1	KEGG: lil:LA1767 hypothetical protein
YP_002358767.1	catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis
YP_002358768.1	KEGG: spc:Sputcn32_1394 hypothetical protein
YP_002358769.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: shw:Sputw3181_2708 short-chain dehydrogenase/reductase SDR
YP_002358770.1	receptor for colicin S4
YP_002358771.1	PFAM: protein of unknown function DUF925; KEGG: spc:Sputcn32_1391 hypothetical protein
YP_002358773.1	TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: shn:Shewana3_2777 maleylacetoacetate isomerase
YP_002358774.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: spc:Sputcn32_1389 fumarylacetoacetate (FAA) hydrolase
YP_002358775.1	PFAM: sigma-54 factor interaction domain-containing protein; amino acid-binding ACT domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: spc:Sputcn32_1388 transcriptional regulator, TyrR
YP_002358776.1	4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction
YP_002358777.1	phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin
YP_002358778.1	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: shw:Sputw3181_2716 UTP-glucose-1-phosphate uridylyltransferase GalU
YP_002358779.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: spc:Sputcn32_1384 UDP-glucose 4-epimerase
YP_002358780.1	TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_2718 ferredoxin-type protein NapF
YP_002358781.1	PFAM: protein of unknown function DUF583; KEGG: shw:Sputw3181_2719 protein of unknown function DUF583
YP_002358782.1	PFAM: regulatory protein LysR; KEGG: spc:Sputcn32_1381 LysR family transcriptional regulator
YP_002358783.1	KEGG: shn:Shewana3_2787 decaheme cytochrome c
YP_002358784.1	KEGG: shw:Sputw3181_2730 hypothetical protein
YP_002358785.1	PFAM: protein of unknown function DUF218; KEGG: spc:Sputcn32_1372 hypothetical protein
YP_002358786.1	catalyzes phosphorylation of fructose; cytosolic enzyme
YP_002358787.1	TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: shm:Shewmr7_2684 3'(2'),5'-bisphosphate nucleotidase
YP_002358788.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: she:Shewmr4_2618 dTDP-4-dehydrorhamnose reductase
YP_002358789.1	PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: shw:Sputw3181_2734 putative hydrolase
YP_002358790.1	KEGG: spc:Sputcn32_1368 SNF2-related protein; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SMART: DEAD-like helicases
YP_002358791.1	PFAM: protein of unknown function DUF885; KEGG: shn:Shewana3_2796 hypothetical protein
YP_002358792.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: shw:Sputw3181_2737 putative cold-shock DNA-binding domain protein
YP_002358793.1	TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: shn:Shewana3_2797 potassium efflux system protein
YP_002358794.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO_1646 GGDEF family protein
YP_002358795.1	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: spc:Sputcn32_1364 tRNA(Ile)-lysidine synthetase
YP_002358796.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_002358797.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_002358798.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_002358799.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_002358800.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_002358801.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_002358802.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: shw:Sputw3181_2746 outer membrane chaperone Skp (OmpH)
YP_002358803.1	TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: shm:Shewmr7_2700 surface antigen (D15)
YP_002358804.1	KEGG: son:SO_1636 membrane-associated zinc metalloprotease, putative; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein
YP_002358805.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_002358806.1	PFAM: phosphatidate cytidylyltransferase; KEGG: shw:Sputw3181_2750 phosphatidate cytidylyltransferase
YP_002358807.1	KEGG: shw:Sputw3181_2751 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase
YP_002358808.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_002358809.1	Catalyzes the phosphorylation of UMP to UDP
YP_002358810.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_002358811.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_002358812.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_002358813.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_002358814.1	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway
YP_002358815.1	PFAM: CBS domain containing protein; GAF domain protein; metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: shw:Sputw3181_2759 metal dependent phosphohydrolase
YP_002358816.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_002358817.1	TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: she:Shewmr4_2648 PTS system, glucose-like IIB subunint
YP_002358818.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_002358819.1	KEGG: shw:Sputw3181_2763 hypothetical protein
YP_002358820.1	PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_2717 tRNA pseudouridine synthase C
YP_002358821.1	PFAM: protein of unknown function DUF446; KEGG: shw:Sputw3181_2765 protein of unknown function DUF446
YP_002358822.1	KEGG: shw:Sputw3181_2766 hypothetical protein
YP_002358823.1	KEGG: son:SO_1617 hypothetical protein
YP_002358825.1	KEGG: son:SO_1615 hypothetical protein
YP_002358826.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shn:Shewana3_2829 GCN5-related N-acetyltransferase
YP_002358827.1	KEGG: shw:Sputw3181_2769 hypothetical protein
YP_002358828.1	KEGG: son:SO_1612 hypothetical protein
YP_002358829.1	KEGG: shw:Sputw3181_2771 hypothetical protein
YP_002358830.1	KEGG: spc:Sputcn32_1331 hypothetical protein
YP_002358831.1	putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function
YP_002358832.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_002358833.1	PFAM: regulatory protein LysR; KEGG: son:SO_1607 LysR family transcriptional regulator
YP_002358834.1	PFAM: beta-lactamase domain protein; KEGG: son:SO_1606 metallo-beta-lactamase superfamily protein
YP_002358835.1	KEGG: shn:Shewana3_2837 putative lipoprotein
YP_002358836.1	PFAM: 4'-phosphopantetheinyl transferase; KEGG: spc:Sputcn32_1328 4'-phosphopantetheinyl transferase
YP_002358837.1	KEGG: spc:Sputcn32_1327 transcriptional regulator, putative
YP_002358838.1	KEGG: shw:Sputw3181_2777 erythronolide synthase; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase
YP_002358839.1	TIGRFAM: PfaB family protein; KEGG: shw:Sputw3181_2778 omega-3 polyunsaturated fatty acid synthase PfaB
YP_002358840.1	PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; Beta-ketoacyl synthase; KEGG: shw:Sputw3181_2779 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ
YP_002358841.1	TIGRFAM: PfaD family protein; KEGG: shw:Sputw3181_2780 2-nitropropane dioxygenase, NPD
YP_002358842.1	PFAM: protein of unknown function DUF1328; KEGG: shm:Shewmr7_2739 protein of unknown function DUF1328
YP_002358843.1	KEGG: shw:Sputw3181_2782 hypothetical protein
YP_002358844.1	PFAM: Dual specificity protein phosphatase; diacylglycerol kinase catalytic region; KEGG: shw:Sputw3181_2783 hypothetical protein
YP_002358845.1	PFAM: major royal jelly protein; KEGG: pat:Patl_1754 hypothetical protein
YP_002358846.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: shw:Sputw3181_2784 sigma54 specific transcriptional regulator, fis family
YP_002358847.1	KEGG: shw:Sputw3181_2785 hypothetical protein
YP_002358848.1	PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: shw:Sputw3181_2786 transport-associated
YP_002358849.1	PFAM: transposase IS4 family protein; KEGG: son:SO_3544 ISSod7, transposase
YP_002358850.1	KEGG: son:SO_1590 hypothetical protein
YP_002358851.1	KEGG: shw:Sputw3181_2787 hypothetical protein
YP_002358852.1	PFAM: polysaccharide deacetylase; KEGG: swd:Swoo_0564 polysaccharide deacetylase
YP_002358853.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_1021 TonB-dependent receptor
YP_002358854.1	PFAM: tryptophan halogenase; KEGG: pat:Patl_0803 tryptophan halogenase
YP_002358855.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: swd:Swoo_0565 AraC family transcriptional regulator
YP_002358856.1	PFAM: major facilitator superfamily MFS_1; KEGG: swd:Swoo_0563 major facilitator transporter
YP_002358857.1	PFAM: ROK family protein; KEGG: swd:Swoo_0562 ROK family protein
YP_002358858.1	PFAM: Carbohydrate-binding chitobiase/hexosaminidase-type domain protein; Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, catalytic core; KEGG: swd:Swoo_0561 beta-N-acetylhexosaminidase
YP_002358859.1	KEGG: shw:Sputw3181_2788 hypothetical protein
YP_002358860.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: shw:Sputw3181_2789 fumarylacetoacetate (FAA) hydrolase
YP_002358861.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shw:Sputw3181_2790 methyl-accepting chemotaxis sensory transducer
YP_002358862.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: shw:Sputw3181_2791 succinylglutamate desuccinylase/aspartoacylase
YP_002358863.1	PFAM: regulatory protein MarR; KEGG: shw:Sputw3181_2792 transcriptional regulator, MarR family
YP_002358864.1	PFAM: major facilitator superfamily MFS_1; KEGG: shw:Sputw3181_2793 major facilitator superfamily MFS_1
YP_002358865.1	PFAM: PhnA protein; KEGG: shw:Sputw3181_2794 putative PhnA protein
YP_002358866.1	TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spc:Sputcn32_1308 TonB-dependent heme/hemoglobin receptor family protein
YP_002358867.1	PFAM: conserved hypothetical protein; KEGG: shw:Sputw3181_2796 hypothetical protein
YP_002358868.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1822 TonB-dependent receptor, plug
YP_002358869.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: swd:Swoo_1435 LacI family transcription regulator
YP_002358870.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tte:TTE0802 phosphatase/phosphohexomutase
YP_002358871.1	PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: cps:CPS_0980 glycosy hydrolase family protein
YP_002358872.1	PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0981 hypothetical protein
YP_002358873.1	PFAM: regulatory protein TetR; KEGG: shn:Shewana3_2864 TetR family transcriptional regulator
YP_002358874.1	PFAM: Glutathione S-transferase domain; KEGG: shn:Shewana3_2865 glutathione S-transferase domain-containing protein
YP_002358875.1	PFAM: Glutathione S-transferase domain; KEGG: shw:Sputw3181_2797 glutathione S-transferase, N-terminal domain
YP_002358876.1	PFAM: Fmu (Sun) domain protein; KEGG: spc:Sputcn32_1305 Fmu (Sun) domain-containing protein
YP_002358877.1	KEGG: shw:Sputw3181_2799 hypothetical protein
YP_002358878.1	KEGG: shn:Shewana3_2869 hypothetical protein
YP_002358879.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: shn:Shewana3_2870 diguanylate cyclase
YP_002358880.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: shn:Shewana3_2871 hypothetical protein
YP_002358881.1	PFAM: YfaZ family protein; KEGG: she:Shewmr4_2702 YfaZ family protein
YP_002358882.1	PFAM: GCN5-related N-acetyltransferase; KEGG: spc:Sputcn32_1302 GCN5-related N-acetyltransferase
YP_002358883.1	TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: she:Shewmr4_2704 MgtE intracellular region
YP_002358884.1	PFAM: glutathione peroxidase; KEGG: shw:Sputw3181_2803 glutathione peroxidase
YP_002358885.1	KEGG: shn:Shewana3_3302 ISPsy11, transposase OrfA
YP_002358886.1	PFAM: Peptidase M1 membrane alanine aminopeptidase ; Leukotriene A4 hydrolase; KEGG: shw:Sputw3181_2804 peptidase M1, membrane alanine aminopeptidase
YP_002358888.1	TIGRFAM: phosphate binding protein; KEGG: shm:Shewmr7_2775 phosphate binding protein
YP_002358889.1	KEGG: shw:Sputw3181_2806 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002358890.1	TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shw:Sputw3181_2807 two component transcriptional regulator, winged helix family
YP_002358891.1	PFAM: porin Gram-negative type; KEGG: she:Shewmr4_2710 porin
YP_002358892.1	Required for efficient pilin antigenic variation
YP_002358893.1	PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: shn:Shewana3_2882 peptidase M61 domain-containing protein
YP_002358894.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: shw:Sputw3181_2811 TPR repeat-containing protein
YP_002358895.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shw:Sputw3181_2812 diguanylate cyclase
YP_002358896.1	PFAM: conserved hypothetical protein; KEGG: shw:Sputw3181_2813 conserved hypothetical protein 730
YP_002358897.1	has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups
YP_002358898.1	KEGG: she:Shewmr4_2717 hypothetical protein
YP_002358899.1	PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: spc:Sputcn32_1287 peptidase S9 prolyl oligopeptidase
YP_002358901.1	catalyzes the formation of 2-oxoglutarate from isocitrate
YP_002358902.1	KEGG: shw:Sputw3181_2821 hypothetical protein
YP_002358903.1	PFAM: protein of unknown function DUF423; KEGG: shw:Sputw3181_2822 protein of unknown function DUF423
YP_002358904.1	KEGG: shw:Sputw3181_2823 hypothetical protein
YP_002358905.1	Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence
YP_002358906.1	KEGG: shm:Shewmr7_2796 hypothetical protein
YP_002358907.1	Required for the synthesis of the thiazole moiety
YP_002358908.1	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella
YP_002358909.1	Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.
YP_002358910.1	TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: shn:Shewana3_2899 exodeoxyribonuclease VII small subunit
YP_002358911.1	PFAM: Polyprenyl synthetase; KEGG: son:SO_1526 geranyltranstransferase
YP_002358912.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_002358913.1	KEGG: shn:Shewana3_3302 ISPsy11, transposase OrfA
YP_002358914.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_002358915.1	catalyzes the phosphorylation of NAD to NADP
YP_002358916.1	PFAM: L-lactate permease; KEGG: shm:Shewmr7_2807 L-lactate permease
YP_002358917.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: shn:Shewana3_2905 FAD linked oxidase domain-containing protein
YP_002358918.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: she:Shewmr4_2736 hypothetical protein
YP_002358919.1	PFAM: protein of unknown function DUF162; KEGG: shw:Sputw3181_2837 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_002358920.1	PFAM: protein of unknown function DUF162; KEGG: shw:Sputw3181_2838 protein of unknown function DUF162
YP_002358921.1	PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: spc:Sputcn32_1267 ATPase central domain-containing protein
YP_002358922.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002358923.1	KEGG: shw:Sputw3181_2844 hypothetical protein
YP_002358924.1	PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO_1506 MATE efflux family protein
YP_002358925.1	PFAM: major facilitator superfamily MFS_1; KEGG: shw:Sputw3181_2846 major facilitator superfamily MFS_1
YP_002358926.1	KEGG: shw:Sputw3181_2847 hypothetical protein
YP_002358927.1	PFAM: extracellular solute-binding protein family 3; KEGG: shw:Sputw3181_2848 extracellular solute-binding protein, family 3
YP_002358928.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: shw:Sputw3181_2849 cobalamin synthesis protein, P47K
YP_002358929.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shw:Sputw3181_2850 DEAD/DEAH box helicase domain protein
YP_002358930.1	KEGG: shw:Sputw3181_2851 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type transmembrane region; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002358931.1	PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: shw:Sputw3181_2852 starch synthase
YP_002358932.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_002358934.1	KEGG: shw:Sputw3181_2854 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35
YP_002358935.1	KEGG: shw:Sputw3181_2855 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain
YP_002358936.1	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_002358937.1	KEGG: shn:Shewana3_2935 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77
YP_002358938.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: shn:Shewana3_2936 peptidyl-prolyl cis-trans isomerase, cyclophilin type
YP_002358939.1	PFAM: transposase IS4 family protein; KEGG: son:SO_3544 ISSod7, transposase
YP_002358940.1	PFAM: regulatory protein MarR; KEGG: shw:Sputw3181_2859 transcriptional regulator, MarR family
YP_002358941.1	PFAM: conserved hypothetical protein; KEGG: sse:Ssed_1117 hypothetical protein
YP_002358942.1	KEGG: swd:Swoo_1195 putative transporter, BCCT family protein
YP_002358943.1	catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine
YP_002358944.1	catalyzes the formation of betaine from betaine aldehyde
YP_002358945.1	HTH-type; bet1; Repressor involved in choline regulation of the bet genes
YP_002358946.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: shw:Sputw3181_2860 iron-containing alcohol dehydrogenase
YP_002358947.1	KEGG: shw:Sputw3181_2861 hypothetical protein
YP_002358948.1	KEGG: shw:Sputw3181_2863 hypothetical protein
YP_002358949.1	PFAM: thioesterase superfamily protein; KEGG: shw:Sputw3181_2864 thioesterase superfamily protein
YP_002358950.1	TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: shw:Sputw3181_2865 isocitrate lyase
YP_002358951.1	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle
YP_002358952.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spc:Sputcn32_1237 TonB-dependent receptor, plug
YP_002358953.1	TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: shw:Sputw3181_2868 potassium efflux system protein
YP_002358954.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO_1480 GGDEF family protein
YP_002358955.1	KEGG: shm:Shewmr7_2849 hypothetical protein
YP_002358956.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: shn:Shewana3_2948 uroporphyrin-III C/tetrapyrrole methyltransferase
YP_002358957.1	PFAM: SmpA/OmlA domain protein; KEGG: shm:Shewmr7_2851 SmpA/OmlA domain protein
YP_002358958.1	PFAM: protein of unknown function UPF0125; KEGG: shn:Shewana3_2950 hypothetical protein
YP_002358959.1	PFAM: cyclase/dehydrase; KEGG: shw:Sputw3181_2875 cyclase/dehydrase
YP_002358960.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_002358961.1	PFAM: BRCT domain protein; KEGG: shn:Shewana3_2687 NAD-dependent DNA ligase
YP_002358963.1	KEGG: shw:Sputw3181_2915 hypothetical protein
YP_002358964.1	PFAM: integrase family protein; KEGG: shw:Sputw3181_2916 phage integrase family protein
YP_002358965.1	KEGG: swd:Swoo_0412 hypothetical protein
YP_002358966.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shw:Sputw3181_1294 DEAD/DEAH box helicase domain protein
YP_002358967.1	KEGG: son:SO_3389 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002358968.1	KEGG: shw:Sputw3181_1293 peptidase S16, lon domain protein
YP_002358969.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: spc:Sputcn32_2720 NADH:flavin oxidoreductase/NADH oxidase
YP_002358970.1	PFAM: regulatory protein TetR; KEGG: shw:Sputw3181_1291 transcriptional regulator, TetR family
YP_002358971.1	PFAM: conserved hypothetical protein; KEGG: shn:Shewana3_1157 hypothetical protein
YP_002358972.1	PFAM: chemotaxis sensory transducer; KEGG: spc:Sputcn32_2723 methyl-accepting chemotaxis sensory transducer
YP_002358973.1	PFAM: protein of unknown function DUF28; KEGG: shw:Sputw3181_1288 hypothetical protein
YP_002358974.1	PFAM: Carotenoid oxygenase; KEGG: sdn:Sden_3052 carotenoid oxygenase
YP_002358975.1	KEGG: sdn:Sden_3053 hypothetical protein
YP_002358977.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: shn:Shewana3_1153 putative signal transduction histidine kinase
YP_002358978.1	PFAM: regulatory protein LuxR; response regulator receiver; KEGG: shn:Shewana3_1152 two component LuxR family transcriptional regulator
YP_002358979.1	KEGG: mmw:Mmwyl1_4380 hypothetical protein
YP_002358980.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shw:Sputw3181_1287 sigma 54 modulation protein/ribosomal protein S30EA
YP_002358981.1	KEGG: shn:Shewana3_1150 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein
YP_002358982.1	TIGRFAM: alpha-1,6-glucosidase, pullulanase-type; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; KEGG: saz:Sama_0287 alpha-1,6-glucosidases, pullulanase-type
YP_002358983.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_0286 TonB-dependent receptor
YP_002358984.1	KEGG: shw:Sputw3181_1285 hypothetical protein
YP_002358985.1	PFAM: PepSY-associated TM helix domain protein; KEGG: shm:Shewmr7_1218 PepSY-associated TM helix domain protein
YP_002358986.1	KEGG: shw:Sputw3181_1283 hypothetical protein
YP_002358987.1	PFAM: OsmC family protein; KEGG: shn:Shewana3_1146 OsmC family protein
YP_002358988.1	KEGG: shn:Shewana3_1145 hypothetical protein
YP_002358989.1	PFAM: peptidase S41; WD40 domain protein beta Propeller; SMART: PDZ/DHR/GLGF domain protein; KEGG: spc:Sputcn32_2731 peptidase S41
YP_002358990.1	PFAM: extracellular solute-binding protein family 3; KEGG: spc:Sputcn32_2732 extracellular solute-binding protein
YP_002358991.1	KEGG: shm:Shewmr7_1212 hypothetical protein
YP_002358992.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_002358993.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_002358994.1	multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways
YP_002358995.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: shw:Sputw3181_1276 peptidylprolyl isomerase, FKBP-type
YP_002358996.1	KEGG: shn:Shewana3_1137 hypothetical protein
YP_002358997.1	TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: shn:Shewana3_1136 Trp operon repressor
YP_002358998.1	PFAM: cytochrome c prime; KEGG: shn:Shewana3_1135 cytochrome c, class II
YP_002358999.1	PFAM: cytochrome B561; KEGG: she:Shewmr4_1133 cytochrome b561
YP_002359000.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shn:Shewana3_1133 SSU ribosomal protein S30P / sigma 54 modulation protein
YP_002359001.1	TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: spc:Sputcn32_1177 chorismate mutase
YP_002359002.1	PFAM: sodium/hydrogen exchanger; KEGG: shm:Shewmr7_2911 sodium/hydrogen exchanger
YP_002359003.1	KEGG: shn:Shewana3_3009 hypothetical protein
YP_002359004.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: shm:Shewmr7_2913 oxidoreductase FAD-binding domain protein
YP_002359005.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_002359006.1	catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis
YP_002359007.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive
YP_002359008.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_002359009.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_002359010.1	Essential for efficient processing of 16S rRNA
YP_002359011.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_002359012.1	with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins
YP_002359013.1	PFAM: cytochrome c assembly protein; KEGG: shn:Shewana3_3019 cytochrome c assembly protein
YP_002359014.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: shw:Sputw3181_2999 protein of unknown function DUF21
YP_002359015.1	PFAM: protein of unknown function DUF962; KEGG: shw:Sputw3181_3000 protein of unknown function DUF962
YP_002359016.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_002359017.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_002359018.1	TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: shw:Sputw3181_3003 DNA repair protein RecO
YP_002359019.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_002359020.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_002359021.1	KEGG: shn:Shewana3_3027 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein
YP_002359022.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_002359023.1	PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: spc:Sputcn32_1156 positive regulator of sigma E, RseC/MucC
YP_002359024.1	PFAM: MucB/RseB family protein; KEGG: shw:Sputw3181_3009 sigma E regulatory protein, MucB/RseB
YP_002359025.1	PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: she:Shewmr4_2853 anti sigma-E protein, RseA
YP_002359026.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_002359027.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_002359028.1	KEGG: shn:Shewana3_3034 hypothetical protein
YP_002359029.1	PFAM: protein of unknown function DUF339; KEGG: son:SO_1339 hypothetical protein
YP_002359030.1	Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC
YP_002359031.1	KEGG: shn:Shewana3_3037 hypothetical protein
YP_002359032.1	exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH
YP_002359033.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_002359034.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_002359035.1	PFAM: protein of unknown function DUF81; KEGG: shm:Shewmr7_2945 protein of unknown function DUF81
YP_002359036.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: shw:Sputw3181_3021 PTSINtr with GAF domain, PtsP
YP_002359037.1	hydrolyzes diadenosine polyphosphate
YP_002359038.1	MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair
YP_002359039.1	KEGG: shw:Sputw3181_3024 putative adenylate/guanylate cyclase
YP_002359040.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_3025 transcriptional regulator, LysR family
YP_002359041.1	PFAM: Hpt domain protein; KEGG: shn:Shewana3_3047 Hpt protein
YP_002359042.1	KEGG: spc:Sputcn32_1137 putative radical SAM protein; TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_002359043.1	catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate
YP_002359044.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_002359045.1	PFAM: purine or other phosphorylase family 1; KEGG: spc:Sputcn32_1134 adenosylhomocysteine nucleosidase
YP_002359046.1	PFAM: cobalamin biosynthesis protein CbiB; KEGG: shn:Shewana3_3053 cobalamin biosynthesis protein CbiB
YP_002359047.1	KEGG: shn:Shewana3_3054 hypothetical protein
YP_002359048.1	PFAM: protein of unknown function UPF0126; KEGG: shw:Sputw3181_3033 protein of unknown function UPF0126
YP_002359049.1	KEGG: she:Shewmr4_2878 hypothetical protein
YP_002359050.1	KEGG: spc:Sputcn32_1129 hypothetical protein
YP_002359051.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_002359052.1	PFAM: Opacity-associated protein A domain protein; Peptidase M23; KEGG: shw:Sputw3181_3037 peptidase M23B
YP_002359053.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_002359054.1	TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: vfm:VFMJ11_A0901 TonB protein
YP_002359055.1	KEGG: shw:Sputw3181_3039 hypothetical protein
YP_002359056.1	KEGG: son:SO_1305 hypothetical protein
YP_002359057.1	essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors
YP_002359058.1	KEGG: she:Shewmr4_2890 hypothetical protein
YP_002359059.1	PFAM: Chloride channel core; KEGG: shw:Sputw3181_3043 Cl-channel, voltage-gated family protein
YP_002359060.1	Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate
YP_002359061.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_002359062.1	KEGG: shn:Shewana3_3072 hypothetical protein
YP_002359063.1	PFAM: Citrate transporter; KEGG: shn:Shewana3_3073 citrate transporter
YP_002359064.1	KEGG: spc:Sputcn32_1117 general secretion pathway protein B
YP_002359065.1	PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: shw:Sputw3181_3048 peptidoglycan-binding domain 1 protein
YP_002359066.1	PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: shn:Shewana3_3076 metal dependent phosphohydrolase
YP_002359067.1	KEGG: shw:Sputw3181_3050 major outer membrane lipoprotein, putative
YP_002359068.1	KEGG: shw:Sputw3181_3051 ribosomal RNA large subunit methyltransferase A, putative
YP_002359069.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_002359070.1	TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: shw:Sputw3181_3053 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
YP_002359071.1	TIGRFAM: dihydroneopterin aldolase; KEGG: shw:Sputw3181_3054 dihydroneopterin aldolase
YP_002359072.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_002359073.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_002359074.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_002359075.1	KEGG: shw:Sputw3181_3058 GatB/YqeY domain protein
YP_002359076.1	KEGG: shw:Sputw3181_3059 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase DnaG DnaB-binding; DNA primase catalytic core domain; SMART: Toprim sub domain protein
YP_002359077.1	TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 non-essential domain protein; sigma-70 region 1.2; KEGG: shw:Sputw3181_3060 RNA polymerase, sigma 70 subunit, RpoD family
YP_002359078.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shw:Sputw3181_3061 methyl-accepting chemotaxis sensory transducer
YP_002359079.1	catalyzes phosphorylation of fructose; cytosolic enzyme
YP_002359080.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: sfr:Sfri_1318 beta-glucosidase
YP_002359081.1	TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: swd:Swoo_1148 glucose/galactose transporter
YP_002359082.1	KEGG: sdn:Sden_2607 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1
YP_002359083.1	TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_1315 sugar (glycoside-pentoside-hexuronide) transporter
YP_002359084.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sdn:Sden_2609 periplasmic binding protein/LacI transcriptional regulator
YP_002359085.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swd:Swoo_1144 TonB-dependent receptor
YP_002359086.1	PFAM: tryptophan halogenase; KEGG: sfr:Sfri_1312 tryptophan halogenase
YP_002359087.1	PFAM: SapC family protein; KEGG: sfr:Sfri_1311 SapC family protein
YP_002359088.1	SMART: transcription factor jumonji jmjC domain protein; KEGG: sfr:Sfri_1310 transcription factor jumonji, JmjC domain protein
YP_002359089.1	PFAM: tryptophan halogenase; KEGG: sfr:Sfri_1309 tryptophan halogenase
YP_002359090.1	KEGG: swd:Swoo_1139 hypothetical protein
YP_002359091.1	KEGG: shw:Sputw3181_3062 amino acid/peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1
YP_002359092.1	PFAM: Luciferase-like monooxygenase; KEGG: spc:Sputcn32_1101 luciferase family protein
YP_002359093.1	PFAM: transposase IS4 family protein; KEGG: son:SO_3544 ISSod7, transposase
YP_002359094.1	catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate
YP_002359095.1	TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: shw:Sputw3181_3065 succinic semialdehyde dehydrogenase
YP_002359096.1	PFAM: FAD dependent oxidoreductase; KEGG: spc:Sputcn32_1098 FAD dependent oxidoreductase
YP_002359097.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shw:Sputw3181_3067 binding-protein-dependent transport systems inner membrane component
YP_002359098.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2998 binding-protein-dependent transport systems inner membrane component
YP_002359099.1	KEGG: shw:Sputw3181_3069 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase
YP_002359100.1	PFAM: extracellular solute-binding protein family 1; KEGG: shm:Shewmr7_3000 extracellular solute-binding protein, family 1
YP_002359101.1	PFAM: glutamine synthetase catalytic region; KEGG: shw:Sputw3181_3071 glutamate--ammonia ligase
YP_002359102.1	PFAM: peptidase C26; KEGG: shn:Shewana3_3099 peptidase C26
YP_002359103.1	PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: shn:Shewana3_3100 XRE family transcriptional regulator
YP_002359104.1	PFAM: FAD dependent oxidoreductase; KEGG: shw:Sputw3181_3074 FAD dependent oxidoreductase
YP_002359105.1	KEGG: spc:Sputcn32_1089 hypothetical protein
YP_002359106.1	PFAM: Rhodanese domain protein; KEGG: spc:Sputcn32_1088 3-mercaptopyruvate sulfurtransferase
YP_002359107.1	TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: spc:Sputcn32_1087 rare lipoprotein A
YP_002359108.1	KEGG: son:SO_0894 hypothetical protein
YP_002359110.1	PFAM: Aldehyde Dehydrogenase; KEGG: shw:Sputw3181_3079 aldehyde dehydrogenase (NAD(+))
YP_002359111.1	catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate
YP_002359112.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: shw:Sputw3181_3081 methylmalonate-semialdehyde dehydrogenase
YP_002359113.1	PFAM: protein of unknown function DUF861 cupin_3; KEGG: shw:Sputw3181_3082 protein of unknown function DUF861, cupin_3
YP_002359114.1	PFAM: conserved hypothetical protein; KEGG: shn:Shewana3_3109 hypothetical protein
YP_002359115.1	TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: shw:Sputw3181_3084 glucose/galactose transporter
YP_002359116.1	KEGG: spc:Sputcn32_1079 hypothetical protein
YP_002359117.1	KEGG: shw:Sputw3181_3087 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase
YP_002359118.1	PFAM: sugar isomerase (SIS); KEGG: spc:Sputcn32_1077 glutamine--fructose-6-phosphate transaminase (isomerizing)
YP_002359119.1	PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: shw:Sputw3181_3089 ATPase, BadF/BadG/BcrA/BcrD type
YP_002359120.1	PFAM: Carbohydrate-binding chitobiase/hexosaminidase-type domain protein; glycoside hydrolase family 20 domain protein; Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, catalytic core; KEGG: shn:Shewana3_3115 beta-N-acetylhexosaminidase
YP_002359121.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shn:Shewana3_3116 methyl-accepting chemotaxis sensory transducer
YP_002359122.1	KEGG: shn:Shewana3_3117 hypothetical protein
YP_002359123.1	PFAM: protein of unknown function DUF81; KEGG: shm:Shewmr7_3021 protein of unknown function DUF81
YP_002359124.1	PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: cak:Caul_0297 tryptophan halogenase
YP_002359125.1	PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: shl:Shal_1146 tryptophan halogenase
YP_002359126.1	PFAM: SapC family protein; KEGG: sfr:Sfri_2877 SapC family protein
YP_002359127.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002359128.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: shm:Shewmr7_3025 transcriptional regulator, LacI family
YP_002359129.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: shw:Sputw3181_3093 NADH dehydrogenase
YP_002359130.1	PFAM: nitrogen regulatory protein P-II; KEGG: son:SO_3519 nitrogen regulatory protein P-II 1
YP_002359131.1	KEGG: son:SO_3520 type IV pilus biogenesis protein, putative
YP_002359132.1	KEGG: son:SO_3521 type IV pilus biogenesis protein, putative
YP_002359133.1	KEGG: son:SO_3523 hypothetical protein
YP_002359134.1	KEGG: son:SO_3524 type IV pilus biogenesis protein PilE
YP_002359135.1	KEGG: shn:Shewana3_3129 type IV pilin biogenesis protein, putative
YP_002359136.1	KEGG: son:SO_3526 hypothetical protein
YP_002359137.1	KEGG: son:SO_3527 hypothetical protein
YP_002359138.1	TIGRFAM: type IV pilus modification protein PilV; KEGG: son:SO_3528 hypothetical protein
YP_002359139.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_002359140.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: shw:Sputw3181_3104 peptidylprolyl isomerase, FKBP-type
YP_002359141.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_002359142.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_002359143.1	TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: spc:Sputcn32_1058 riboflavin biosynthesis protein RibF
YP_002359144.1	TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: shw:Sputw3181_3108 integral membrane protein MviN
YP_002359145.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_002359146.1	PFAM: regulatory protein ArsR; KEGG: shw:Sputw3181_3110 regulatory protein, ArsR
YP_002359147.1	PFAM: peptidase M20; peptidase M28; KEGG: she:Shewmr4_2962 peptidase M28
YP_002359148.1	PFAM: protein of unknown function DUF328; KEGG: shm:Shewmr7_3045 hypothetical protein
YP_002359149.1	TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: shw:Sputw3181_3113 amino acid carrier protein
YP_002359150.1	PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: shw:Sputw3181_3114 putative phosphoketolase
YP_002359151.1	PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: son:SO_3545 OmpA family protein
YP_002359152.1	KEGG: she:Shewmr4_2967 transaldolase B; TIGRFAM: transaldolase; PFAM: Transaldolase
YP_002359153.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_002359154.1	KEGG: shn:Shewana3_3149 hypothetical protein
YP_002359155.1	KEGG: shn:Shewana3_3302 ISPsy11, transposase OrfA
YP_002359156.1	PFAM: Hemerythrin HHE cation binding domain protein; KEGG: shw:Sputw3181_3119 hemerythrin HHE cation binding domain protein
YP_002359157.1	KEGG: son:SO_3550 hypothetical protein
YP_002359158.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: shw:Sputw3181_3121 RNA polymerase, sigma-24 subunit, ECF subfamily
YP_002359159.1	PFAM: von Willebrand factor type A; KEGG: shw:Sputw3181_3122 von Willebrand factor, type A
YP_002359160.1	putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport
YP_002359161.1	KEGG: shn:Shewana3_3155 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_002359162.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_002359163.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002359164.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: shm:Shewmr7_3059 diguanylate cyclase with GAF sensor
YP_002359165.1	KEGG: shm:Shewmr7_3060 hypothetical protein
YP_002359166.1	KEGG: shn:Shewana3_3159 hypothetical protein
YP_002359167.1	involved in the first step of glutathione biosynthesis
YP_002359168.1	PFAM: peptidase M16 domain protein; KEGG: shn:Shewana3_3161 peptidase M16 domain-containing protein
YP_002359169.1	KEGG: she:Shewmr4_2982 hypothetical protein
YP_002359170.1	PFAM: sodium:dicarboxylate symporter; KEGG: shw:Sputw3181_3132 sodium:dicarboxylate symporter
YP_002359171.1	KEGG: shw:Sputw3181_3133 hypothetical protein
YP_002359172.1	KEGG: shw:Sputw3181_3134 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit
YP_002359173.1	catalyzes the formation of pyruvate from oxaloacetate
YP_002359174.1	TIGRFAM: sodium pump decarboxylase, gamma subunit; PFAM: sodium pump decarboxylase gamma subunit; KEGG: shw:Sputw3181_3136 sodium pump decarboxylases, gamma subunit
YP_002359175.1	KEGG: shw:Sputw3181_3139 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_002359176.1	KEGG: shw:Sputw3181_3140 hypothetical protein
YP_002359177.1	KEGG: shw:Sputw3181_3141 ATPase AAA-2 domain protein; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; Torsin; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase
YP_002359178.1	PFAM: protein of unknown function DUF152; KEGG: shw:Sputw3181_3142 protein of unknown function DUF152
YP_002359179.1	KEGG: shw:Sputw3181_3143 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase
YP_002359180.1	TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: shw:Sputw3181_3144 putative lipoprotein
YP_002359181.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shn:Shewana3_3173 methyl-accepting chemotaxis sensory transducer
YP_002359182.1	PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: shn:Shewana3_3174 globin
YP_002359183.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shw:Sputw3181_3146 pseudouridine synthase
YP_002359184.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: slo:Shew_0934 TPR repeat-containing protein
YP_002359185.1	PFAM: Helix-turn-helix type 11 domain protein; KEGG: shw:Sputw3181_3147 putative transcriptional regulator
YP_002359186.1	PFAM: NADPH-dependent FMN reductase; KEGG: shw:Sputw3181_3148 NADPH-dependent FMN reductase
YP_002359187.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: shw:Sputw3181_3149 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002359188.1	PFAM: Protein of unknown function DUF1971; KEGG: shl:Shal_0936 hypothetical protein
YP_002359189.1	KEGG: shw:Sputw3181_3150 hypothetical protein
YP_002359190.1	PFAM: GPR1/FUN34/yaaH family protein; KEGG: shw:Sputw3181_3151 GPR1/FUN34/YaaH family protein
YP_002359191.1	KEGG: shn:Shewana3_3181 hypothetical protein
YP_002359192.1	PFAM: MltA-interacting MipA family protein; KEGG: shn:Shewana3_3182 MltA-interacting MipA family protein
YP_002359193.1	KEGG: shw:Sputw3181_3154 hypothetical protein
YP_002359194.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shw:Sputw3181_3155 two component transcriptional regulator, winged helix family
YP_002359195.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: spc:Sputcn32_1009 integral membrane sensor signal transduction histidine kinase
YP_002359196.1	PFAM: protein of unknown function DUF1289; KEGG: spc:Sputcn32_1008 hypothetical protein
YP_002359197.1	KEGG: spc:Sputcn32_1007 hypothetical protein
YP_002359198.1	catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide
YP_002359199.1	TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: spc:Sputcn32_1005 sulfate ABC transporter, periplasmic sulfate-binding protein
YP_002359200.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shw:Sputw3181_3161 sulfate ABC transporter, inner membrane subunit CysT
YP_002359201.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shw:Sputw3181_3162 sulfate ABC transporter, inner membrane subunit CysW
YP_002359202.1	KEGG: shw:Sputw3181_3163 sulfate ABC transporter, ATPase subunit; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002359203.1	KEGG: shw:Sputw3181_3158 hypothetical protein
YP_002359204.1	PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: she:Shewmr4_3019 ATPase central domain-containing protein
YP_002359205.1	PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_3096 secretion protein HlyD family protein
YP_002359206.1	KEGG: shn:Shewana3_3194 hypothetical protein
YP_002359207.1	non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis
YP_002359208.1	PFAM: pseudouridine synthase; KEGG: spc:Sputcn32_1000 pseudouridine synthase
YP_002359209.1	KEGG: spc:Sputcn32_0999 hypothetical protein
YP_002359210.1	SMART: Tetratricopeptide domain protein; KEGG: spc:Sputcn32_0998 TPR repeat-containing protein
YP_002359211.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: spc:Sputcn32_0997 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_002359212.1	KEGG: shw:Sputw3181_3171 hypothetical protein
YP_002359213.1	functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system
YP_002359214.1	PFAM: Nucleotidyl transferase; KEGG: shw:Sputw3181_3173 nucleotidyl transferase
YP_002359215.1	PFAM: aminoglycoside phosphotransferase; KEGG: shw:Sputw3181_3174 aminoglycoside phosphotransferase
YP_002359216.1	PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: shn:Shewana3_3206 organic solvent tolerance protein
YP_002359218.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: shn:Shewana3_3207 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_002359219.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_002359220.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_002359221.1	protein associated with Co2+ and Mg2+ efflux
YP_002359222.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_002359223.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shn:Shewana3_3212 methyl-accepting chemotaxis sensory transducer
YP_002359224.1	KEGG: shm:Shewmr7_3119 hypothetical protein
YP_002359225.1	PFAM: dihydrofolate reductase region; KEGG: shw:Sputw3181_3183 dihydrofolate reductase
YP_002359226.1	KEGG: son:SO_3647 hypothetical protein
YP_002359227.1	PFAM: protein of unknown function DUF1212; KEGG: shw:Sputw3181_3185 protein of unknown function DUF1212
YP_002359228.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_002359229.1	involved in the peptidyltransferase reaction during translation
YP_002359230.1	PFAM: ribosomal protein L21; KEGG: shw:Sputw3181_3188 50S ribosomal protein L21
YP_002359231.1	PFAM: Polyprenyl synthetase; KEGG: shw:Sputw3181_3189 trans-hexaprenyltranstransferase
YP_002359232.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_002359233.1	KEGG: son:SO_3655 pilin, putative
YP_002359234.1	KEGG: son:SO_3656 hypothetical protein
YP_002359235.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shn:Shewana3_3224 lysine exporter protein LysE/YggA
YP_002359236.1	PFAM: peptidase S10 serine carboxypeptidase; KEGG: shn:Shewana3_3225 peptidase S10, serine carboxypeptidase
YP_002359237.1	KEGG: shw:Sputw3181_3194 thiol:disulfide interchange protein, putative
YP_002359238.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_3081 TonB-dependent receptor
YP_002359239.1	KEGG: shw:Sputw3181_3195 transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase
YP_002359240.1	TIGRFAM: cytochrome c oxidase accessory protein CcoG; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: spc:Sputcn32_0971 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_002359241.1	PFAM: AMP-dependent synthetase and ligase; KEGG: shw:Sputw3181_3197 AMP-dependent synthetase and ligase
YP_002359242.1	KEGG: shw:Sputw3181_3198 lipid A ABC exporter family, fused ATPase and inner membrane subunits; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase
YP_002359243.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: shw:Sputw3181_3199 pyridoxamine 5'-phosphate oxidase-related, FMN-binding
YP_002359244.1	PFAM: protein of unknown function DUF1008; KEGG: spc:Sputcn32_0967 hypothetical protein
YP_002359245.1	TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shw:Sputw3181_3201 TonB-dependent heme/hemoglobin receptor family protein
YP_002359246.1	TIGRFAM: TonB family protein; KEGG: shn:Shewana3_3236 TonB family protein
YP_002359247.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: shw:Sputw3181_3203 MotA/TolQ/ExbB proton channel
YP_002359248.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: spc:Sputcn32_0963 biopolymer transport protein ExbD/TolR
YP_002359249.1	PFAM: periplasmic binding protein; KEGG: spc:Sputcn32_0962 periplasmic binding protein
YP_002359250.1	PFAM: transport system permease protein; ABC-3 protein; KEGG: shw:Sputw3181_3215 transport system permease protein
YP_002359251.1	with HmuTU is involved in the transport of hemin
YP_002359252.1	KEGG: shw:Sputw3181_3217 hypothetical protein
YP_002359253.1	KEGG: shn:Shewana3_3243 hypothetical protein
YP_002359254.1	KEGG: cli:Clim_1221 hypothetical protein
YP_002359255.1	KEGG: shw:Sputw3181_3220 hypothetical protein
YP_002359256.1	PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: spc:Sputcn32_0955 peptidase M17, leucyl aminopeptidase domain-containing protein
YP_002359257.1	KEGG: spc:Sputcn32_0954 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_002359258.1	KEGG: dol:Dole_1687 hypothetical protein
YP_002359259.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ilo:IL2343 methyl-accepting chemotaxis protein
YP_002359260.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: shw:Sputw3181_3223 protein of unknown function DUF6, transmembrane
YP_002359261.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_3224 transcriptional regulator, LysR family
YP_002359262.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_002359263.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: spc:Sputcn32_0950 methyl-accepting chemotaxis sensory transducer
YP_002359264.1	TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: spc:Sputcn32_0949 bacterioferritin
YP_002359265.1	TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: shn:Shewana3_0946 bacterioferritin
YP_002359266.1	PFAM: protein of unknown function DUF539; KEGG: shw:Sputw3181_3229 protein of unknown function DUF539
YP_002359267.1	PFAM: ApbE family lipoprotein; KEGG: shw:Sputw3181_3230 ApbE family lipoprotein
YP_002359268.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_002359269.1	Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.
YP_002359270.1	Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm
YP_002359271.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_002359272.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_002359273.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_002359274.1	PFAM: TonB-dependent receptor; KEGG: spc:Sputcn32_0939 TonB-dependent receptor
YP_002359275.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_002359276.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: shm:Shewmr7_0971 TRAP dicarboxylate transporter-DctP subunit
YP_002359277.1	PFAM: BolA family protein; KEGG: shm:Shewmr7_0970 transcriptional regulator BolA
YP_002359278.1	KEGG: shw:Sputw3181_3241 2OG-Fe(II) oxygenase
YP_002359279.1	PFAM: methyltransferase small; Methyltransferase type 12; KEGG: shw:Sputw3181_3242 rRNA (guanine-N(2)-)-methyltransferase
YP_002359280.1	KEGG: spc:Sputcn32_0933 hypothetical protein
YP_002359281.1	KEGG: spc:Sputcn32_0932 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein
YP_002359282.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: spc:Sputcn32_0931 GntR family transcriptional regulator
YP_002359283.1	PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: shw:Sputw3181_3246 cytochrome bd ubiquinol oxidase, subunit I
YP_002359284.1	TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: shw:Sputw3181_3247 cytochrome d ubiquinol oxidase, subunit II
YP_002359285.1	KEGG: pfo:Pfl01_4891 hypothetical protein
YP_002359286.1	KEGG: shw:Sputw3181_3248 GreA/GreB family elongation factor
YP_002359287.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: shn:Shewana3_0925 AraC family transcriptional regulator
YP_002359288.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: spc:Sputcn32_0926 hypothetical protein
YP_002359289.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shn:Shewana3_0923 methyl-accepting chemotaxis sensory transducer
YP_002359290.1	PFAM: ApbE family lipoprotein; KEGG: shm:Shewmr7_0957 ApbE family protein, putative
YP_002359291.1	PFAM: Na+/H+ antiporter NhaC; KEGG: spc:Sputcn32_0924 Na+/H+ antiporter NhaC
YP_002359292.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shw:Sputw3181_3254 pseudouridine synthase
YP_002359293.1	KEGG: swd:Swoo_2928 hypothetical protein
YP_002359294.1	KEGG: nma:NMA0695 hypothetical protein
YP_002359295.1	KEGG: shw:Sputw3181_3257 hypothetical protein
YP_002359296.1	PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: shw:Sputw3181_3258 aromatic amino acid permease
YP_002359297.1	GbpA; plays a role mediating bacterial attachment and colonization of zooplankton and/or intestinal epithelium; in Vibrio cholerae this protein probably binds directly N-acetylglucosamine residues in chitin, glycoproteins and lipids on intestinal epithelial cells
YP_002359298.1	PFAM: protein of unknown function UPF0016; KEGG: shn:Shewana3_0909 hypothetical protein
YP_002359299.1	PFAM: Catalase domain protein; KEGG: son:SO_1070 catalase
YP_002359300.1	KEGG: shw:Sputw3181_0942 hypothetical protein
YP_002359301.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002359302.1	PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_0943 uncharacterized domain 1
YP_002359303.1	KEGG: she:Shewmr4_3032 hypothetical protein
YP_002359304.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: shn:Shewana3_0904 endonuclease/exonuclease/phosphatase
YP_002359305.1	PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: she:Shewmr4_3034 peptidylprolyl isomerase, FKBP-type
YP_002359306.1	PFAM: WD-40 repeat protein; KEGG: spc:Sputcn32_3011 WD-40 repeat-containing protein
YP_002359307.1	PFAM: SlyX family protein; KEGG: son:SO_1063 SlyX protein
YP_002359308.1	KEGG: shm:Shewmr7_0937 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_002359309.1	PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: spc:Sputcn32_3014 TPR repeat-containing protein
YP_002359310.1	TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: shn:Shewana3_0898 hypothetical protein
YP_002359311.1	TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: shm:Shewmr7_0932 Aminopeptidase N. Metallo peptidase. MEROPS family M01
YP_002359312.1	PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: spc:Sputcn32_3017 methyl-accepting chemotaxis sensory transducer
YP_002359313.1	KEGG: shw:Sputw3181_0929 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002359314.1	PFAM: protein of unknown function DUF72; KEGG: shw:Sputw3181_0928 protein of unknown function DUF72
YP_002359315.1	KEGG: son:SO_1053 hypothetical protein
YP_002359316.1	PFAM: phosphate transporter; KEGG: shn:Shewana3_0892 phosphate transporter
YP_002359317.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: shw:Sputw3181_0926 helix-turn-helix-domain containing protein, AraC type
YP_002359318.1	Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group
YP_002359319.1	involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans
YP_002359320.1	PFAM: thioesterase superfamily protein; KEGG: sfr:Sfri_1868 uncharacterized domain 1
YP_002359321.1	TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: hch:HCH_03207 catalase/peroxidase HPI
YP_002359322.1	PFAM: carbon starvation protein CstA; KEGG: shw:Sputw3181_0923 carbon starvation protein CstA
YP_002359323.1	KEGG: shn:Shewana3_3295 hypothetical protein
YP_002359324.1	KEGG: pha:PSHAb0259 putative orphan protein
YP_002359325.1	KEGG: pha:PSHAb0258 putative orphan protein
YP_002359326.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_002359327.1	KEGG: bpm:BURPS1710b_3602 hypothetical protein
YP_002359328.1	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: spc:Sputcn32_3051 formate dehydrogenase, alpha subunit
YP_002359329.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: shm:Shewmr7_3199 methyl-accepting chemotaxis sensory transducer
YP_002359330.1	TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: shw:Sputw3181_0892 chromate transporter, chromate ion transporter (CHR) family
YP_002359331.1	RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA
YP_002359332.1	PFAM: FAD dependent oxidoreductase; KEGG: shn:Shewana3_3310 FAD dependent oxidoreductase
YP_002359333.1	PFAM: regulatory protein MarR; KEGG: shw:Sputw3181_0889 transcriptional regulator, MarR family
YP_002359334.1	PFAM: OsmC family protein; KEGG: shm:Shewmr7_3209 OsmC family protein
YP_002359335.1	KEGG: shm:Shewmr7_3210 hypothetical protein
YP_002359336.1	KEGG: shn:Shewana3_3314 hypothetical protein
YP_002359337.1	KEGG: shw:Sputw3181_3264 hypothetical protein
YP_002359338.1	PFAM: Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: shm:Shewmr7_3213 methyltransferase type 12
YP_002359339.1	KEGG: she:Shewmr4_0809 hypothetical protein
YP_002359340.1	TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: shn:Shewana3_3318 flavocytochrome c
YP_002359341.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: shn:Shewana3_3319 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_002359342.1	PFAM: dienelactone hydrolase; KEGG: spc:Sputcn32_0903 dienelactone hydrolase
YP_002359343.1	KEGG: shw:Sputw3181_3270 hypothetical protein
YP_002359344.1	KEGG: sdn:Sden_3531 hypothetical protein
YP_002359345.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ilo:IL1228 outer membrane protein
YP_002359346.1	KEGG: sdn:Sden_0345 PepSY-associated TM helix
YP_002359347.1	PFAM: PepSY-associated TM helix domain protein; KEGG: sfr:Sfri_0270 hypothetical protein
YP_002359348.1	KEGG: shw:Sputw3181_3273 hypothetical protein
YP_002359349.1	PFAM: Spermine synthase; KEGG: spc:Sputcn32_0898 spermine synthase
YP_002359350.1	PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: shm:Shewmr7_3221 leucyl aminopeptidase
YP_002359351.1	TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shw:Sputw3181_3276 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_002359352.1	TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: shw:Sputw3181_3277 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_002359353.1	PFAM: GCN5-related N-acetyltransferase; KEGG: spc:Sputcn32_0894 GCN5-related N-acetyltransferase
YP_002359354.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: spc:Sputcn32_0892 single-stranded-DNA-specific exonuclease RecJ
YP_002359355.1	KEGG: shm:Shewmr7_3227 thiol:disulfide interchange protein DsbC
YP_002359356.1	TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: shw:Sputw3181_3283 tyrosine recombinase XerD
YP_002359357.1	PFAM: branched-chain amino acid transport system II carrier protein; KEGG: shn:Shewana3_3332 branched-chain amino acid transport system II carrier protein
YP_002359358.1	KEGG: spc:Sputcn32_0888 methyltransferase type 12
YP_002359359.1	facilitates an early step in the assembly of the 50S subunit of the ribosome
YP_002359360.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: shw:Sputw3181_3287 efflux transporter, RND family, MFP subunit
YP_002359361.1	PFAM: acriflavin resistance protein; KEGG: shw:Sputw3181_3288 acriflavin resistance protein
YP_002359362.1	PFAM: Radical SAM domain protein; KEGG: shm:Shewmr7_3236 radical SAM domain protein
YP_002359363.1	KEGG: shw:Sputw3181_3290 putative PAS/PAC sensor protein
YP_002359364.1	KEGG: shw:Sputw3181_3291 hypothetical protein
YP_002359365.1	KEGG: shw:Sputw3181_3292 hypothetical protein
YP_002359366.1	PFAM: transcriptional regulator domain protein; KEGG: shm:Shewmr7_3240 lysine decarboxylase transcriptional regulator, CadC
YP_002359367.1	PFAM: Citrate transporter; KEGG: shn:Shewana3_3348 Na+/H+ antiporter
YP_002359368.1	PFAM: protein of unknown function DUF481; KEGG: shn:Shewana3_3349 hypothetical protein
YP_002359369.1	class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis
YP_002359370.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_002359371.1	NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate
YP_002359372.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_002359373.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_002359374.1	PFAM: integrase family protein; KEGG: sfr:Sfri_1950 phage integrase family protein
YP_002359375.1	PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: sfr:Sfri_1951 helix-turn-helix domain protein
YP_002359376.1	TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: sfr:Sfri_1953 type I restriction-modification system, M subunit
YP_002359377.1	PFAM: restriction modification system DNA specificity domain; KEGG: sfr:Sfri_1954 restriction modification system DNA specificity domain
YP_002359378.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: sfr:Sfri_1955 filamentation induced by cAMP protein Fic
YP_002359379.1	KEGG: sfr:Sfri_1956 type I site-specific deoxyribonuclease, HsdR family protein; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases
YP_002359380.1	PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_1378 GCN5-related N-acetyltransferase
YP_002359381.1	KEGG: shw:Sputw3181_3308 hypothetical protein
YP_002359382.1	KEGG: shw:Sputw3181_3309 acetyltransferase, GNAT family
YP_002359383.1	KEGG: shm:Shewmr7_3256 GGDEF domain protein
YP_002359384.1	KEGG: shm:Shewmr7_3257 hypothetical protein
YP_002359385.1	PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: shm:Shewmr7_3258 protein of unknown function DUF306, MetA and HslJ
YP_002359386.1	PFAM: sodium:dicarboxylate symporter; KEGG: shw:Sputw3181_3312 sodium:dicarboxylate symporter
YP_002359387.1	KEGG: son:SO_0921 hypothetical protein
YP_002359388.1	PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO_0920 acetyltransferase
YP_002359389.1	PFAM: aromatic amino acid permease; KEGG: shw:Sputw3181_3314 aromatic amino acid permease
YP_002359390.1	PFAM: transposase IS4 family protein; KEGG: son:SO_3544 ISSod7, transposase
YP_002359391.1	PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: shw:Sputw3181_3317 transcriptional regulator, MarR family
YP_002359392.1	PFAM: transposase IS4 family protein; KEGG: spc:Sputcn32_2918 transposase, IS4 family protein
YP_002359394.1	KEGG: cts:Ctha_0426 hypothetical protein
YP_002359395.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_002359396.1	Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.
YP_002359397.1	Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm
YP_002359398.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_002359399.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_002359400.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_002359401.1	PFAM: aldo/keto reductase; KEGG: shw:Sputw3181_3325 aldo/keto reductase
YP_002359403.1	PFAM: MltA-interacting MipA family protein; KEGG: shw:Sputw3181_3326 MltA-interacting MipA family protein
YP_002359404.1	KEGG: spc:Sputcn32_0846 hypothetical protein
YP_002359405.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: shw:Sputw3181_3328 integral membrane sensor signal transduction histidine kinase
YP_002359406.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shw:Sputw3181_3330 two component transcriptional regulator, winged helix family
YP_002359407.1	KEGG: shw:Sputw3181_3331 hypothetical protein
YP_002359408.1	PFAM: MltA-interacting MipA family protein; KEGG: shw:Sputw3181_3332 MltA-interacting MipA family protein
YP_002359409.1	KEGG: shn:Shewana3_3382 hypothetical protein
YP_002359410.1	TIGRFAM: outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shn:Shewana3_3383 TonB-dependent receptor, plug
YP_002359411.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shn:Shewana3_0809 methyl-accepting chemotaxis sensory transducer
YP_002359412.1	TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aminotransferase class I and II; KEGG: shw:Sputw3181_3333 cysteine desulfurases, SufS subfamily
YP_002359413.1	PFAM: Fe-S metabolism associated SufE; KEGG: shw:Sputw3181_3334 Fe-S metabolism associated SufE
YP_002359414.1	PFAM: peptidase M19 renal dipeptidase; KEGG: shw:Sputw3181_3335 peptidase M19, renal dipeptidase
YP_002359415.1	KEGG: she:Shewmr4_3134 hypothetical protein
YP_002359416.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: shw:Sputw3181_3336 cupin 2, conserved barrel domain protein
YP_002359417.1	KEGG: spc:Sputcn32_0836 hypothetical protein
YP_002359418.1	PFAM: protein of unknown function DUF1696; KEGG: shm:Shewmr7_0829 protein of unknown function DUF1696
YP_002359419.1	PFAM: peptidase U32; KEGG: shw:Sputw3181_3338 peptidase U32
YP_002359420.1	PFAM: pseudouridine synthase; KEGG: spc:Sputcn32_0834 pseudouridylate synthase
YP_002359421.1	transcriptional repressor of asnA which codes for aspartate-ammonia ligase
YP_002359422.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: son:SO_3800 serine protease
YP_002359423.1	KEGG: shm:Shewmr7_3734 transposase
YP_002359424.1	PFAM: ABC-2 type transporter; KEGG: spc:Sputcn32_0831 ABC-2 type transporter
YP_002359425.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO_3802 ABC transporter, ATP-binding protein
YP_002359426.1	KEGG: shw:Sputw3181_3344 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_002359427.1	TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: spc:Sputcn32_0828 aromatic acid decarboxylase
YP_002359428.1	TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: shw:Sputw3181_3346 UDP-N-acetylmuramate
YP_002359429.1	KEGG: shw:Sputw3181_3347 hypothetical protein
YP_002359430.1	PFAM: fatty acid hydroxylase; KEGG: shw:Sputw3181_3348 sterol desaturase family protein
YP_002359431.1	KEGG: shw:Sputw3181_3349 hypothetical protein
YP_002359432.1	PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: son:SO_3810 OmpA-like transmembrane domain-containing protein
YP_002359433.1	PFAM: Uncharacterized lipoprotein; KEGG: shm:Shewmr7_0815 uncharacterized lipoprotein
YP_002359434.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: shw:Sputw3181_3352 peptidyl-prolyl cis-trans isomerase, cyclophilin type
YP_002359435.1	KEGG: shw:Sputw3181_3353 hypothetical protein
YP_002359436.1	PFAM: major facilitator superfamily MFS_1; KEGG: spc:Sputcn32_0819 major facilitator transporter
YP_002359437.1	putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_002359439.1	PFAM: VanZ family protein; KEGG: shw:Sputw3181_3356 VanZ family protein
YP_002359440.1	KEGG: shw:Sputw3181_3357 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein
YP_002359441.1	PFAM: nitrogen regulatory protein P-II; KEGG: son:SO_3819 nitrogen regulatory protein P-II
YP_002359442.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: shm:Shewmr7_0807 ammonium transporter
YP_002359443.1	PFAM: EAL domain protein; KEGG: spc:Sputcn32_0814 EAL domain-containing protein
YP_002359444.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: shm:Shewmr7_0804 hypothetical protein
YP_002359445.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_002359446.1	PFAM: protein of unknown function DUF819; KEGG: shw:Sputw3181_3366 protein of unknown function DUF819
YP_002359447.1	KEGG: shm:Shewmr7_0801 hypothetical protein
YP_002359448.1	PFAM: Invasion gene expression up-regulator SirB; KEGG: shw:Sputw3181_3368 invasion gene expression up-regulator, SirB
YP_002359449.1	PFAM: GCN5-related N-acetyltransferase; KEGG: spc:Sputcn32_0805 GCN5-related N-acetyltransferase
YP_002359450.1	TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: shw:Sputw3181_3373 modification methylase, HemK family
YP_002359451.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_002359452.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_002359453.1	PFAM: outer membrane lipoprotein LolB; KEGG: son:SO_3835 outer membrane lipoprotein LolB
YP_002359454.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_002359455.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_002359456.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shn:Shewana3_0764 methyl-accepting chemotaxis sensory transducer
YP_002359457.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: shw:Sputw3181_3380 RNA polymerase, sigma-24 subunit, ECF subfamily
YP_002359458.1	KEGG: shn:Shewana3_0762 hypothetical protein
YP_002359459.1	KEGG: shm:Shewmr7_0789 hypothetical protein
YP_002359460.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: she:Shewmr4_3178 ribosomal small subunit pseudouridine synthase A
YP_002359461.1	KEGG: sse:Ssed_3508 nodulation protein L
YP_002359462.1	PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: she:Shewmr4_3179 endothelin-converting protein 1
YP_002359463.1	KEGG: shw:Sputw3181_3385 hypothetical protein
YP_002359464.1	KEGG: shw:Sputw3181_3386 hypothetical protein
YP_002359465.1	KEGG: shm:Shewmr7_0784 hypothetical protein
YP_002359466.1	PFAM: Glutathione S-transferase domain; KEGG: shm:Shewmr7_0783 glutathione S-transferase, N-terminal domain protein
YP_002359467.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shn:Shewana3_0754 TonB-dependent receptor
YP_002359468.1	PFAM: membrane-flanked domain; KEGG: spc:Sputcn32_0787 membrane-flanked domain-containing protein
YP_002359469.1	KEGG: spc:Sputcn32_0786 putative manganese transporter
YP_002359470.1	PFAM: protein of unknown function DUF1456; KEGG: shw:Sputw3181_3390 protein of unknown function DUF1456
YP_002359471.1	malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate
YP_002359472.1	KEGG: son:SO_3856 hypothetical protein
YP_002359473.1	PFAM: phosphoesterase PA-phosphatase related; KEGG: she:Shewmr4_3190 phosphoesterase, PA-phosphatase related
YP_002359474.1	KEGG: shn:Shewana3_0747 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein
YP_002359475.1	PFAM: extracellular solute-binding protein family 3; KEGG: shn:Shewana3_0746 extracellular solute-binding protein
YP_002359476.1	TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; KEGG: shw:Sputw3181_3393 putative iron-sulfur cluster binding protein
YP_002359477.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_002359478.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_0770 transcriptional regulator, LysR family
YP_002359479.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: son:SO_0816 hypothetical protein
YP_002359480.1	KEGG: spc:Sputcn32_3175 hypothetical protein
YP_002359481.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shw:Sputw3181_0767 TonB-dependent siderophore receptor
YP_002359482.1	KEGG: shm:Shewmr7_0650 hypothetical protein
YP_002359483.1	KEGG: shw:Sputw3181_0766 hypothetical protein
YP_002359484.1	Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific
YP_002359485.1	catalyzes the formation of D-ribose 5-phosphate from ribose
YP_002359486.1	TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein; KEGG: shn:Shewana3_3478 blue (type1) copper domain-containing protein
YP_002359487.1	KEGG: shw:Sputw3181_0762 hypothetical protein
YP_002359489.1	KEGG: shw:Sputw3181_0761 hypothetical protein
YP_002359490.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: she:Shewmr4_3310 glycerophosphoryl diester phosphodiesterase
YP_002359491.1	KEGG: son:SO_0807 hypoxanthine-guanine phosphoribosyltransferase
YP_002359492.1	KEGG: shn:Shewana3_3482 alkaline phosphatase
YP_002359493.1	PFAM: CBS domain containing protein; KEGG: shw:Sputw3181_0758 CBS domain containing protein
YP_002359494.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: shw:Sputw3181_0756 MATE efflux family protein
YP_002359495.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: spc:Sputcn32_3188 alpha/beta hydrolase domain-containing protein
YP_002359496.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_002359497.1	PFAM: transposase IS4 family protein; KEGG: plu:plu3796 hypothetical protein
YP_002359498.1	KEGG: saz:Sama_2729 hypothetical protein
YP_002359499.1	TIGRFAM: outer membrane adhesin like proteiin; PFAM: von Willebrand factor type A; Domain of unknown function DUF1973; KEGG: she:Shewmr4_3393 putative outer membrane adhesin like protein
YP_002359500.1	KEGG: shm:Shewmr7_0559 hypothetical protein
YP_002359501.1	PFAM: protein of unknown function DUF985; KEGG: spc:Sputcn32_3190 hypothetical protein
YP_002359502.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shn:Shewana3_3488 diguanylate cyclase
YP_002359503.1	KEGG: swd:Swoo_0837 hypothetical protein
YP_002359504.1	PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: shw:Sputw3181_0744 uncharacterized domain
YP_002359505.1	KEGG: shl:Shal_3327 hypothetical protein
YP_002359506.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: she:Shewmr4_3323 methyl-accepting chemotaxis sensory transducer
YP_002359507.1	KEGG: shw:Sputw3181_0742 hypothetical protein
YP_002359508.1	KEGG: spc:Sputcn32_3202 hypothetical protein
YP_002359509.1	KEGG: spc:Sputcn32_3203 hypothetical protein
YP_002359510.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002359511.1	KEGG: rso:RSc0206 putative signal peptide protein
YP_002359512.1	KEGG: ank:AnaeK_3353 hypothetical protein
YP_002359513.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dac:Daci_5840 alcohol dehydrogenase
YP_002359514.1	PFAM: major facilitator superfamily MFS_1; KEGG: ent:Ent638_0048 major facilitator transporter
YP_002359515.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bpy:Bphyt_0040 transcriptional regulator, LysR family
YP_002359516.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002359518.1	PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: vha:VIBHAR_06960 threonyl-tRNA synthetase
YP_002359519.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_002359520.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_002359521.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_002359522.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO_0778 FAD-binding, UbiH/COQ6 family oxidoreductase
YP_002359523.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: spc:Sputcn32_3213 2-polyprenyl-6-methoxyphenol 4-hydroxylase
YP_002359524.1	TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: shw:Sputw3181_0727 YecA family protein
YP_002359525.1	PFAM: protein of unknown function DUF710; KEGG: shn:Shewana3_3505 cell division protein ZapA
YP_002359526.1	PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: spc:Sputcn32_3216 5-formyltetrahydrofolate cyclo-ligase
YP_002359527.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: spc:Sputcn32_3217 short chain dehydrogenase
YP_002359528.1	PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: shw:Sputw3181_0723 putative thiol-disulphide oxidoreductase DCC
YP_002359529.1	oxidizes malate to oxaloacetate
YP_002359530.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_002359531.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_0719 transcriptional regulator, LysR family
YP_002359532.1	TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: shw:Sputw3181_0718 Dyp-type peroxidase family
YP_002359533.1	KEGG: shn:Shewana3_3514 gamma-glutamyltransferase 2; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase
YP_002359534.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: shw:Sputw3181_0716 ABC transporter related
YP_002359535.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_0607 binding-protein-dependent transport systems inner membrane component
YP_002359536.1	PFAM: extracellular solute-binding protein family 1; KEGG: shn:Shewana3_3517 extracellular solute-binding protein
YP_002359537.1	KEGG: shm:Shewmr7_0605 hypothetical protein
YP_002359538.1	PFAM: Glutathione S-transferase domain; KEGG: shn:Shewana3_3519 glutathione S-transferase domain-containing protein
YP_002359539.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: she:Shewmr4_3350 oxidoreductase FAD/NAD(P)-binding subunit
YP_002359540.1	KEGG: son:SO_0748 hypothetical protein
YP_002359541.1	PFAM: Phosphoglycerate mutase; KEGG: spc:Sputcn32_3232 phosphoglycerate mutase
YP_002359542.1	PFAM: ferredoxin-dependent glutamate synthase; KEGG: shm:Shewmr7_0600 ferredoxin-dependent glutamate synthase
YP_002359543.1	KEGG: shw:Sputw3181_0707 hypothetical protein
YP_002359544.1	KEGG: shw:Sputw3181_0706 hypothetical protein
YP_002359545.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: spc:Sputcn32_3236 ABC transporter related
YP_002359546.1	KEGG: shw:Sputw3181_0704 hypothetical protein
YP_002359547.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_002359548.1	SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_0594 tetratricopeptide TPR_2 repeat protein
YP_002359549.1	KEGG: shm:Shewmr7_0593 hypothetical protein
YP_002359550.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: shw:Sputw3181_0701 Rh family protein/ammonium transporter
YP_002359551.1	PFAM: nitrogen regulatory protein P-II; KEGG: son:SO_0761 nitrogen regulatory protein P-II 1
YP_002359552.1	PFAM: isochorismatase hydrolase; KEGG: shw:Sputw3181_0699 isochorismatase hydrolase
YP_002359553.1	catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552
YP_002359554.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: shn:Shewana3_0657 nitrate/nitrite sensor protein NarQ
YP_002359555.1	PFAM: regulatory protein LuxR; response regulator receiver; KEGG: shn:Shewana3_0656 two component LuxR family transcriptional regulator
YP_002359556.1	PFAM: conserved hypothetical protein; KEGG: son:SO_3983 hypothetical protein
YP_002359557.1	PFAM: Mg2 transporter protein CorA family protein; KEGG: shw:Sputw3181_3490 Mg2+ transporter protein, CorA family protein
YP_002359558.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO_3985 hypothetical protein
YP_002359559.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive
YP_002359560.1	KEGG: spc:Sputcn32_0679 hypothetical protein
YP_002359561.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO_3988 two-component response regulator
YP_002359563.1	PFAM: peptidase S15; peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: spc:Sputcn32_0677 peptidase S9B dipeptidylpeptidase IV subunit
YP_002359564.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_002359565.1	KEGG: shw:Sputw3181_2637 transposase IS116/IS110/IS902 family protein
YP_002359566.1	KEGG: pat:Patl_1736 hypothetical protein
YP_002359567.1	PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_1779 transposase IS116/IS110/IS902 family protein
YP_002359568.1	KEGG: son:SO_3996 hypothetical protein
YP_002359569.1	PFAM: conserved hypothetical protein; KEGG: son:SO_3997 hypothetical protein
YP_002359570.1	KEGG: shn:Shewana3_0643 hypothetical protein
YP_002359571.1	PFAM: sodium:dicarboxylate symporter; KEGG: spc:Sputcn32_0671 sodium:dicarboxylate symporter
YP_002359572.1	KEGG: shw:Sputw3181_3504 hypothetical protein
YP_002359573.1	KEGG: shw:Sputw3181_3505 hypothetical protein
YP_002359574.1	KEGG: spc:Sputcn32_0668 hypothetical protein
YP_002359575.1	KEGG: spc:Sputcn32_0667 hypothetical protein
YP_002359576.1	PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: shw:Sputw3181_3508 response regulator receiver protein
YP_002359577.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: spc:Sputcn32_0665 histidine kinase
YP_002359578.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3510 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_002359579.1	PFAM: Polysulphide reductase NrfD; KEGG: shw:Sputw3181_3511 polysulphide reductase, NrfD
YP_002359580.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: shw:Sputw3181_3512 molydopterin dinucleotide-binding region
YP_002359581.1	KEGG: shn:Shewana3_0632 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002359582.1	KEGG: shw:Sputw3181_3514 hypothetical protein
YP_002359583.1	KEGG: spc:Sputcn32_0659 hypothetical protein
YP_002359584.1	KEGG: shw:Sputw3181_3516 hypothetical protein
YP_002359585.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: shw:Sputw3181_3517 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_002359586.1	KEGG: shw:Sputw3181_3518 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase
YP_002359587.1	KEGG: shw:Sputw3181_3519 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases
YP_002359588.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: spc:Sputcn32_0654 diguanylate cyclase/phosphodiesterase
YP_002359589.1	TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: she:Shewmr4_0620 2'-5' RNA ligase
YP_002359590.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO_0625 hypothetical protein
YP_002359591.1	complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons
YP_002359592.1	KEGG: shn:Shewana3_0616 hypothetical protein
YP_002359593.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shw:Sputw3181_3524 two component transcriptional regulator, winged helix family
YP_002359594.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: shw:Sputw3181_3525 integral membrane sensor signal transduction histidine kinase
YP_002359595.1	KEGG: spc:Sputcn32_0648 hypothetical protein
YP_002359596.1	a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH
YP_002359597.1	KEGG: shw:Sputw3181_3528 arginine N-succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine N-succinyltransferase; PFAM: arginine N-succinyltransferase beta subunit
YP_002359598.1	DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate
YP_002359599.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: spc:Sputcn32_0644 alpha/beta hydrolase domain-containing protein
YP_002359600.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: son:SO_0615 hypothetical protein
YP_002359601.1	PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: shn:Shewana3_0607 peptidase S9 prolyl oligopeptidase
YP_002359602.1	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: she:Shewmr4_0607 aminodeoxychorismate synthase, glutamine amidotransferase subunit
YP_002359603.1	PFAM: Stringent starvation protein B; KEGG: shm:Shewmr7_3424 ClpXP protease specificity-enhancing factor
YP_002359604.1	transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation
YP_002359605.1	PFAM: cytochrome c1; KEGG: shm:Shewmr7_3426 cytochrome c1
YP_002359606.1	PFAM: Cytochrome b/b6 domain; KEGG: shm:Shewmr7_3427 cytochrome b/b6, N-terminal domain protein
YP_002359607.1	KEGG: shn:Shewana3_0601 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; Ubiquinol-cytochrome c reductase iron-sulfur subunit
YP_002359608.1	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: shm:Shewmr7_3429 HflC protein
YP_002359609.1	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: shw:Sputw3181_0663 HflK protein
YP_002359610.1	TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: shw:Sputw3181_0662 GTP-binding protein, HSR1-related
YP_002359611.1	TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: shw:Sputw3181_0661 RNA chaperone Hfq
YP_002359612.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_002359613.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_002359614.1	PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: she:Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase
YP_002359615.1	PFAM: protein of unknown function UPF0079; KEGG: shw:Sputw3181_0657 protein of unknown function UPF0079
YP_002359616.1	TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: shw:Sputw3181_0656 carbohydrate kinase, YjeF related protein
YP_002359617.1	KEGG: shw:Sputw3181_0655 hypothetical protein
YP_002359618.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_002359619.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_002359620.1	catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine
YP_002359621.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: shn:Shewana3_0587 hypothetical protein
YP_002359622.1	PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_3443 MscS mechanosensitive ion channel
YP_002359623.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: shw:Sputw3181_0649 glycerophosphoryl diester phosphodiesterase
YP_002359624.1	KEGG: shn:Shewana3_0584 hypothetical protein
YP_002359625.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: she:Shewmr4_0584 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_002359626.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: spc:Sputcn32_3294 methyl-accepting chemotaxis sensory transducer
YP_002359627.1	PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: shn:Shewana3_0581 BFD/(2Fe-2S)-binding domain-containing protein
YP_002359628.1	catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide
YP_002359629.1	KEGG: shw:Sputw3181_0644 hypothetical protein
YP_002359630.1	SMART: serine/threonine protein kinase; KEGG: shn:Shewana3_0578 serine/threonine protein kinase
YP_002359631.1	KEGG: shw:Sputw3181_0642 hypothetical protein
YP_002359632.1	KEGG: shm:Shewmr7_3453 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Cache domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002359633.1	PFAM: PhoH family protein; SMART: AAA ATPase; Nucleotide binding protein PINc; KEGG: shn:Shewana3_0575 PhoH family protein
YP_002359634.1	transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA
YP_002359635.1	KEGG: shw:Sputw3181_0638 hypothetical protein
YP_002359636.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002359637.1	PFAM: response regulator receiver; KEGG: shm:Shewmr7_3458 response regulator receiver protein
YP_002359638.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: spc:Sputcn32_3306 diguanylate cyclase
YP_002359639.1	PFAM: protein of unknown function DUF1260; KEGG: shw:Sputw3181_0634 hypothetical protein
YP_002359640.1	KEGG: shw:Sputw3181_0633 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase
YP_002359641.1	PFAM: ABC-3 protein; KEGG: shw:Sputw3181_0632 ABC-3 protein
YP_002359642.1	PFAM: periplasmic solute binding protein; KEGG: shw:Sputw3181_0631 periplasmic solute binding protein
YP_002359643.1	KEGG: shn:Shewana3_0565 hypothetical protein
YP_002359644.1	KEGG: spc:Sputcn32_3312 hypothetical protein
YP_002359645.1	KEGG: son:SO_0563 hypothetical protein
YP_002359647.1	KEGG: son:SO_0562 hypothetical protein
YP_002359648.1	PFAM: MscS Mechanosensitive ion channel; KEGG: shn:Shewana3_0561 MscS mechanosensitive ion channel
YP_002359649.1	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_002359650.1	PFAM: aldo/keto reductase; KEGG: she:Shewmr4_0560 aldo/keto reductase
YP_002359651.1	PFAM: MaoC domain protein dehydratase; KEGG: shn:Shewana3_0558 dehydratase
YP_002359652.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_3472 methyltransferase type 11
YP_002359653.1	PFAM: GumN family protein; KEGG: shw:Sputw3181_0624 GumN family protein
YP_002359654.1	KEGG: shn:Shewana3_0555 hypothetical protein
YP_002359655.1	PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: shn:Shewana3_0554 diguanylate cyclase/phosphodiesterase
YP_002359656.1	KEGG: shw:Sputw3181_0621 hypothetical protein
YP_002359657.1	KEGG: shm:Shewmr7_3477 hypothetical protein
YP_002359658.1	KEGG: son:SO_0552 hypothetical protein
YP_002359659.1	KEGG: shw:Sputw3181_0619 hypothetical protein
YP_002359660.1	KEGG: shw:Sputw3181_0618 hypothetical protein
YP_002359661.1	PFAM: response regulator receiver; KEGG: shw:Sputw3181_0617 response regulator receiver protein
YP_002359662.1	PFAM: histone family protein DNA-binding protein; KEGG: shw:Sputw3181_0616 histone family protein DNA-binding protein
YP_002359663.1	PFAM: conserved hypothetical protein; KEGG: shw:Sputw3181_0615 hypothetical protein
YP_002359664.1	TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: shw:Sputw3181_0614 alpha-L-glutamate ligases, RimK family
YP_002359665.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: shw:Sputw3181_0613 response regulator receiver modulated diguanylate cyclase/phosphodiesterase
YP_002359666.1	PFAM: response regulator receiver; KEGG: shw:Sputw3181_0612 response regulator receiver protein
YP_002359667.1	KEGG: shw:Sputw3181_0611 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002359668.1	KEGG: shm:Shewmr7_3488 hypothetical protein
YP_002359669.1	KEGG: shn:Shewana3_0540 hypothetical protein
YP_002359670.1	PFAM: protein of unknown function DUF1704; KEGG: shw:Sputw3181_0609 protein of unknown function DUF1704
YP_002359671.1	TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: shw:Sputw3181_0608 amino acid carrier protein
YP_002359672.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: son:SO_0541 metallo-beta-lactamase family protein
YP_002359673.1	KEGG: son:SO_0540 hypothetical protein
YP_002359674.1	PFAM: major facilitator superfamily MFS_1; KEGG: son:SO_0539 transporter, putative
YP_002359675.1	catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate
YP_002359676.1	KEGG: son:SO_0536 redox-active disulfide protein 2
YP_002359677.1	PFAM: permease; KEGG: she:Shewmr4_0534 permease
YP_002359678.1	PFAM: regulatory protein ArsR; KEGG: son:SO_0532 arsenical resistence operon repressor
YP_002359679.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shn:Shewana3_0531 lysine exporter protein LysE/YggA
YP_002359680.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_0530 LysR family transcriptional regulator
YP_002359681.1	PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: spe:Spro_3109 AraC family transcriptional regulator
YP_002359682.1	PFAM: isochorismatase hydrolase; KEGG: spe:Spro_3108 isochorismatase hydrolase
YP_002359684.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: shw:Sputw3181_0604 antibiotic biosynthesis monooxygenase
YP_002359685.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_0603 GCN5-related N-acetyltransferase
YP_002359686.1	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_3508 drug resistance transporter, EmrB/QacA subfamily
YP_002359687.1	PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_3509 secretion protein HlyD family protein
YP_002359688.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_0521 LysR family transcriptional regulator
YP_002359689.1	forms homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_002359690.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: shw:Sputw3181_0601 antibiotic biosynthesis monooxygenase
YP_002359691.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: spc:Sputcn32_3341 CzcA family heavy metal efflux protein
YP_002359692.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: shw:Sputw3181_0599 efflux transporter, RND family, MFP subunit
YP_002359693.1	KEGG: shw:Sputw3181_0598 outer membrane efflux protein
YP_002359694.1	KEGG: shw:Sputw3181_0597 hypothetical protein
YP_002359695.1	KEGG: shn:Shewana3_0514 hypothetical protein
YP_002359696.1	KEGG: shw:Sputw3181_0595 hypothetical protein
YP_002359697.1	PFAM: Class I peptide chain release factor; KEGG: shw:Sputw3181_0594 hypothetical protein
YP_002359698.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_002359699.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: son:SO_0511 acetyl-CoA carboxylase, biotin carboxyl carrier protein
YP_002359700.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: shw:Sputw3181_0592 short-chain dehydrogenase/reductase SDR
YP_002359701.1	PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_0508 major facilitator transporter
YP_002359702.1	KEGG: she:Shewmr4_0507 hypothetical protein
YP_002359703.1	TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: shw:Sputw3181_0589 UbiD family decarboxylase
YP_002359704.1	NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin
YP_002359705.1	PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_1779 transposase IS116/IS110/IS902 family protein
YP_002359706.1	PFAM: KAP P-loop domain protein; KEGG: sdn:Sden_3526 KAP P-loop
YP_002359707.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: spc:Sputcn32_3355 flavoprotein oxygenase
YP_002359708.1	PFAM: fatty acid cistrans isomerase; KEGG: shm:Shewmr7_3530 fatty acid cistrans isomerase
YP_002359709.1	PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: shm:Shewmr7_3531 endothelin-converting enzyme 1
YP_002359710.1	KEGG: shw:Sputw3181_0573 hypothetical protein
YP_002359711.1	KEGG: shm:Shewmr7_3550 putative mitomycin resistance protein
YP_002359712.1	PFAM: protein of unknown function UPF0118; KEGG: shw:Sputw3181_0571 protein of unknown function UPF0118
YP_002359713.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_3552 redoxin domain protein
YP_002359714.1	PFAM: 2-nitropropane dioxygenase NPD; KEGG: shw:Sputw3181_0570 2-nitropropane dioxygenase, NPD
YP_002359715.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sus:Acid_4609 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002359716.1	periplasmic sensory protein associated with the TorRS two-component regulatory system
YP_002359717.1	catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway
YP_002359718.1	unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.
YP_002359719.1	KEGG: maq:Maqu_1264 hypothetical protein
YP_002359720.1	KEGG: PDZ domain protein, putative
YP_002359721.1	KEGG: shw:Sputw3181_0566 hypothetical protein
YP_002359722.1	PFAM: NUDIX hydrolase; KEGG: shw:Sputw3181_0565 NUDIX hydrolase
YP_002359723.1	PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: shn:Shewana3_0462 protein of unknown function, zinc metallopeptidase putative
YP_002359724.1	KEGG: she:Shewmr4_0465 hypothetical protein
YP_002359725.1	KEGG: son:SO_0461 hypothetical protein
YP_002359726.1	PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: shw:Sputw3181_0564 protein of unknown function DUF853, NPT hydrolase putative
YP_002359727.1	KEGG: shw:Sputw3181_0563 hypothetical protein
YP_002359728.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: shn:Shewana3_0457 response regulator receiver protein
YP_002359729.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: spc:Sputcn32_3382 TRAP transporter, 4TM/12TM fusion protein
YP_002359730.1	PFAM: Domain of unknown function DUF1850; KEGG: spc:Sputcn32_3383 hypothetical protein
YP_002359731.1	KEGG: she:Shewmr4_0458 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein
YP_002359732.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: son:SO_0453 peptidyl-prolyl cis-trans isomerase FkbP
YP_002359733.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: shw:Sputw3181_0551 thioredoxin
YP_002359734.1	TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: shw:Sputw3181_0550 anion transporter
YP_002359735.1	PFAM: major facilitator superfamily MFS_1; KEGG: spc:Sputcn32_3394 major facilitator transporter
YP_002359736.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sse:Ssed_3265 conserved hypothetical ribosomal small subunit pseudouridine synthase A
YP_002359737.1	PFAM: band 7 protein; KEGG: shn:Shewana3_0444 band 7 protein
YP_002359738.1	PFAM: permease; KEGG: she:Shewmr4_0447 permease
YP_002359739.1	mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators
YP_002359740.1	involved in de novo purine biosynthesis
YP_002359741.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_002359742.1	KEGG: son:SO_0440 hypothetical protein
YP_002359743.1	KEGG: son:SO_0439 hypothetical protein
YP_002359744.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: shn:Shewana3_0437 short chain dehydrogenase
YP_002359745.1	KEGG: shw:Sputw3181_0538 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002359746.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_002359747.1	binds specifically to the major sigma factor sigma 70; active in stationary phase
YP_002359748.1	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate
YP_002359749.1	YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate
YP_002359750.1	KEGG: son:SO_0430 hypothetical protein
YP_002359751.1	PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: shw:Sputw3181_0531 endothelin-converting enzyme 1
YP_002359752.1	PFAM: Patatin; surface antigen variable number repeat protein; KEGG: shw:Sputw3181_0530 patatin
YP_002359753.1	KEGG: shw:Sputw3181_0529 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002359754.1	E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_002359755.1	KEGG: shw:Sputw3181_0527 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein
YP_002359756.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_002359757.1	activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex
YP_002359758.1	involved in regulation of beta-lactamase; putative signaling protein
YP_002359759.1	PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: shn:Shewana3_0423 N-acetyl-anhydromuranmyl-L-alanine amidase
YP_002359760.1	KEGG: shn:Shewana3_0422 nicotinate-nucleotide pyrophosphorylase [carboxylating]; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase
YP_002359761.1	KEGG: spl:Spea_0414 methylation site containing protein
YP_002359763.1	PFAM: Domain of unknown function DUF1835; KEGG: btl:BALH_2360 hypothetical protein
YP_002359764.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002359765.1	TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: spc:Sputcn32_3423 type IV-A pilus assembly ATPase PilB
YP_002359766.1	PFAM: type II secretion system protein; KEGG: shn:Shewana3_0418 type II secretion system protein
YP_002359767.1	PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: she:Shewmr4_0418 Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
YP_002359768.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_002359769.1	PFAM: protein of unknown function DUF1342; KEGG: shn:Shewana3_0415 hypothetical protein
YP_002359770.1	PFAM: protein of unknown function DUF329; KEGG: spc:Sputcn32_3428 hypothetical protein
YP_002359771.1	TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: shw:Sputw3181_0510 mutator MutT protein
YP_002359772.1	KEGG: shn:Shewana3_0412 hypothetical protein
YP_002359773.1	PFAM: Ppx/GppA phosphatase; KEGG: shw:Sputw3181_0508 Ppx/GppA phosphatase
YP_002359774.1	enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation
YP_002359775.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO_0406 thioredoxin 1
YP_002359776.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_002359777.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spc:Sputcn32_3435 LysR family transcriptional regulator
YP_002359778.1	TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: spc:Sputcn32_3436 alcohol dehydrogenase
YP_002359779.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: shw:Sputw3181_0502 antibiotic biosynthesis monooxygenase
YP_002359780.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_002359781.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_002359782.1	PFAM: fumarate reductase respiratory complex transmembrane subunit; KEGG: shn:Shewana3_0402 fumarate reductase respiratory complex, transmembrane subunit
YP_002359783.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit
YP_002359784.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_002359785.1	TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: shn:Shewana3_0399 nifR3 family TIM-barrel protein
YP_002359786.1	Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription
YP_002359787.1	PFAM: UvrD/REP helicase; DNA topoisomerase type IA zn finger domain protein; KEGG: sfr:Sfri_0452 UvrD/REP helicase
YP_002359788.1	PFAM: Hemerythrin HHE cation binding domain protein; KEGG: spc:Sputcn32_3576 hypothetical protein
YP_002359789.1	PFAM: AAA-4 family protein; KEGG: shw:Sputw3181_3716 putative transcriptional regulator
YP_002359790.1	PFAM: HupE/UreJ protein; KEGG: shw:Sputw3181_3717 HupE/UreJ protein
YP_002359791.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shw:Sputw3181_3718 HAD-superfamily hydrolase, subfamily IA, variant 1
YP_002359792.1	TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: shn:Shewana3_0393 tyrosine recombinase XerC
YP_002359793.1	PFAM: protein of unknown function DUF484; KEGG: spc:Sputcn32_3581 hypothetical protein
YP_002359794.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_002359795.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: shw:Sputw3181_3722 diaminopimelate decarboxylase
YP_002359796.1	KEGG: shw:Sputw3181_3723 hypothetical protein
YP_002359797.1	TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; KEGG: shw:Sputw3181_3724 frataxin family protein
YP_002359798.1	catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP
YP_002359799.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_002359800.1	PFAM: Uroporphyrinogen III synthase HEM4; KEGG: son:SO_4314 uroporphyrinogen-III synthase
YP_002359801.1	PFAM: protein of unknown function DUF513 hemX; KEGG: spc:Sputcn32_3589 protein of unknown function DUF513, HemX
YP_002359802.1	PFAM: HemY domain protein; KEGG: shn:Shewana3_0383 HemY domain-containing protein
YP_002359803.1	TIGRFAM: YD repeat protein; outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; WD40 domain protein beta Propeller; KEGG: swd:Swoo_0491 outer membrane adhesin like proteiin
YP_002359804.1	KEGG: she:Shewmr4_0383 ABC transporter related; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase
YP_002359805.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: spc:Sputcn32_3593 HlyD family type I secretion membrane fusion protein
YP_002359806.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: shm:Shewmr7_3645 type I secretion outer membrane protein, TolC family
YP_002359807.1	PFAM: OmpA/MotB domain protein; KEGG: shn:Shewana3_0378 OmpA/MotB domain-containing protein
YP_002359808.1	KEGG: shw:Sputw3181_3736 hypothetical protein
YP_002359809.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: shw:Sputw3181_3737 diguanylate cyclase/phosphodiesterase
YP_002359810.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: shw:Sputw3181_3738 diguanylate cyclase/phosphodiesterase with GAF sensor
YP_002359811.1	TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: spc:Sputcn32_3599 ATP-dependent DNA helicase Rep
YP_002359812.1	PFAM: protein of unknown function DUF526; KEGG: shw:Sputw3181_3740 protein of unknown function DUF526
YP_002359813.1	KEGG: spc:Sputcn32_3601 hypothetical protein
YP_002359814.1	KEGG: she:Shewmr4_0373 hypothetical protein
YP_002359815.1	PFAM: protein of unknown function DUF1006; KEGG: she:Shewmr4_0372 hypothetical protein
YP_002359816.1	KEGG: son:SO_4333 hypothetical protein
YP_002359817.1	PFAM: Inner membrane CreD family protein; KEGG: spc:Sputcn32_3605 hypothetical protein
YP_002359818.1	PFAM: phosphoesterase PA-phosphatase related; KEGG: shw:Sputw3181_3745 phosphoesterase, PA-phosphatase related
YP_002359819.1	PFAM: extracellular solute-binding protein family 3; KEGG: saz:Sama_3276 ABC-type amino acid transport/signal transduction system
YP_002359820.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: son:SO_4337 AsnC family transcriptional regulator
YP_002359822.1	PFAM: sodium:neurotransmitter symporter; KEGG: son:SO_4339 sodium-dependent transporter, putative
YP_002359823.1	PFAM: import inner membrane translocase subunit Tim44; KEGG: shw:Sputw3181_3746 import inner membrane translocase, subunit Tim44
YP_002359825.1	KEGG: dar:Daro_2503 hypothetical protein
YP_002359826.1	KEGG: son:SO_4342 hypothetical protein
YP_002359827.1	PFAM: aminotransferase class V; KEGG: spc:Sputcn32_3610 alanine--glyoxylate transaminase
YP_002359828.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_002359829.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_002359830.1	KEGG: shw:Sputw3181_3753 acetolactate synthase 2 regulatory subunit
YP_002359831.1	catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit
YP_002359832.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_002359833.1	participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate
YP_002359834.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: shw:Sputw3181_3757 protein of unknown function DUF21
YP_002359835.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: shn:Shewana3_0350 diguanylate cyclase
YP_002359836.1	KEGG: shn:Shewana3_0349 periplasmic sugar-binding protein, putative
YP_002359837.1	KEGG: spc:Sputcn32_3639 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_002359838.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: shw:Sputw3181_3780 phospholipid/glycerol acyltransferase
YP_002359839.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: shw:Sputw3181_3781 phospholipid/glycerol acyltransferase
YP_002359840.1	PFAM: protein of unknown function DUF523; KEGG: shw:Sputw3181_3782 protein of unknown function DUF523
YP_002359841.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: shw:Sputw3181_3783 transcriptional regulator, GntR family
YP_002359842.1	catalyzes the formation of pyruvate and succinate from 2-methylisocitrate
YP_002359843.1	catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity
YP_002359844.1	Catalyzes the conversion of citrate to isocitrate
YP_002359845.1	TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: shw:Sputw3181_3787 putative AcnD-accessory protein PrpF
YP_002359846.1	KEGG: shw:Sputw3181_3788 isocitrate lyase family protein
YP_002359847.1	KEGG: shw:Sputw3181_3789 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002359848.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_002359849.1	PFAM: Modulator of Rho-dependent transcription termination; KEGG: shw:Sputw3181_3791 transcriptional antiterminator, Rof
YP_002359850.1	PFAM: Endoribonuclease L-PSP; KEGG: shw:Sputw3181_3793 endoribonuclease L-PSP
YP_002359851.1	PFAM: Citrate transporter; Na+/H+ antiporter NhaC; KEGG: spc:Sputcn32_3653 Na+/H+ antiporter NhaC
YP_002359852.1	PFAM: protein of unknown function DUF904; KEGG: shw:Sputw3181_3795 protein of unknown function DUF904
YP_002359853.1	PFAM: protein of unknown function DUF1107; KEGG: son:SO_0334 hypothetical protein
YP_002359854.1	PFAM: DSBA oxidoreductase; KEGG: shm:Shewmr7_0302 DsbA oxidoreductase
YP_002359855.1	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages
YP_002359856.1	KEGG: shw:Sputw3181_3799 hypothetical protein
YP_002359857.1	PFAM: protein of unknown function UPF0061; KEGG: spc:Sputcn32_3659 hypothetical protein
YP_002359858.1	KEGG: shw:Sputw3181_3801 hypothetical protein
YP_002359859.1	KEGG: shw:Sputw3181_3802 hypothetical protein
YP_002359860.1	PFAM: DsrE family protein; KEGG: shn:Shewana3_3844 DsrE family protein
YP_002359861.1	KEGG: shw:Sputw3181_3804 hypothetical protein
YP_002359862.1	KEGG: spc:Sputcn32_3664 hypothetical protein
YP_002359863.1	KEGG: shw:Sputw3181_3806 hypothetical protein
YP_002359864.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ajs:Ajs_4122 diguanylate cyclase
YP_002359865.1	KEGG: shw:Sputw3181_3815 hypothetical protein
YP_002359866.1	PFAM: acyltransferase 3; KEGG: she:Shewmr4_3653 acyltransferase 3
YP_002359867.1	KEGG: shw:Sputw3181_3817 hypothetical protein
YP_002359868.1	PFAM: protein of unknown function DUF1232; KEGG: shn:Shewana3_3867 hypothetical protein
YP_002359869.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: shm:Shewmr7_0281 transcriptional regulator, AraC family
YP_002359870.1	PFAM: PEBP family protein; KEGG: she:Shewmr4_3665 PBP family phospholipid-binding protein
YP_002359871.1	PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: shw:Sputw3181_3821 ornithine decarboxylase
YP_002359872.1	catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system
YP_002359873.1	PFAM: porin Gram-negative type; KEGG: shn:Shewana3_3873 porin
YP_002359874.1	KEGG: msu:MS0957 GntK protein; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase
YP_002359875.1	TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: pha:PSHAb0479 gluconate transporter, low affinity GNT 1 system
YP_002359876.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pin:Ping_2929 transcriptional regulator, periplasmic binding protein of LacI family protein
YP_002359877.1	PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: shw:Sputw3181_3824 hypothetical protein
YP_002359878.1	KEGG: shw:Sputw3181_3825 hypothetical protein
YP_002359879.1	PFAM: protein of unknown function DUF1212; KEGG: shn:Shewana3_3876 hypothetical protein
YP_002359880.1	KEGG: shn:Shewana3_3877 hypothetical protein
YP_002359881.1	KEGG: spc:Sputcn32_3688 hypothetical protein
YP_002359882.1	KEGG: shw:Sputw3181_3831 putative orphan protein
YP_002359883.1	PFAM: protein of unknown function DUF883 ElaB; KEGG: spc:Sputcn32_3690 hypothetical protein
YP_002359884.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: shw:Sputw3181_3833 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase
YP_002359885.1	PFAM: LppC family lipoprotein; KEGG: shm:Shewmr7_0261 LppC family lipoprotein
YP_002359886.1	PFAM: protein of unknown function UPF0102; KEGG: shw:Sputw3181_3835 hypothetical protein
YP_002359887.1	TIGRFAM: phosphoheptose isomerase; KEGG: shw:Sputw3181_3836 phosphoheptose isomerase
YP_002359888.1	PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: shw:Sputw3181_3837 transport-associated
YP_002359889.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: shw:Sputw3181_3838 protein of unknown function DUF6, transmembrane
YP_002359890.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_3839 transcriptional regulator, LysR family
YP_002359891.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002359892.1	TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shw:Sputw3181_3841 phosphoglycolate phosphatase
YP_002359893.1	PFAM: ribulose-phosphate 3-epimerase; KEGG: shw:Sputw3181_3842 ribulose-phosphate 3-epimerase
YP_002359894.1	KEGG: shm:Shewmr7_0252 hypothetical protein
YP_002359895.1	KEGG: son:SO_0290 hypothetical protein
YP_002359896.1	KEGG: shw:Sputw3181_3844 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase
YP_002359897.1	PFAM: Sporulation domain protein; KEGG: spc:Sputcn32_3704 sporulation domain-containing protein
YP_002359898.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_002359899.1	type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_002359900.1	TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: shn:Shewana3_3895 type IV pilus secretin PilQ
YP_002359901.1	PFAM: Pilus assembly protein PilP; KEGG: shn:Shewana3_3896 methyl-accepting chemotaxis sensory transducer
YP_002359902.1	PFAM: Pilus assembly protein PilO; KEGG: shw:Sputw3181_3850 pilus assembly protein, PilO
YP_002359903.1	PFAM: Fimbrial assembly family protein; KEGG: shm:Shewmr7_0243 fimbrial assembly family protein
YP_002359904.1	TIGRFAM: type IV pilus assembly protein PilM; KEGG: shm:Shewmr7_0242 type IV pilus assembly protein PilM
YP_002359905.1	KEGG: shm:Shewmr7_0241 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase
YP_002359906.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_002359907.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_002359908.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_002359909.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_002359910.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_002359911.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_002359912.1	PFAM: protein of unknown function DUF1439; KEGG: spc:Sputcn32_3719 hypothetical protein
YP_002359913.1	TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: son:SO_0272 competence/damage-inducible protein CinA
YP_002359914.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shn:Shewana3_0237 redoxin domain-containing protein
YP_002359915.1	TIGRFAM: cytochrome c nitrite reductase, accessory protein NrfF; PFAM: cytochrome C biogenesis protein; KEGG: shn:Shewana3_0236 cytochrome c biogenesis protein
YP_002359916.1	TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO_0267 thiol:disulfide interchange protein DsbE
YP_002359917.1	TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: shm:Shewmr7_0229 cytochrome c-type biogenesis protein CcmF
YP_002359918.1	TIGRFAM: cytochrome c-type biogenesis protein CcmI; SMART: Tetratricopeptide domain protein; KEGG: shw:Sputw3181_0190 TPR repeat-containing protein
YP_002359919.1	PFAM: cytochrome c class I; KEGG: shn:Shewana3_0232 cytochrome c, class I
YP_002359920.1	ATP-binding protein; required for proper cytochrome c maturation
YP_002359921.1	TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: son:SO_0262 heme exporter protein CcmB
YP_002359922.1	TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: son:SO_0261 heme exporter protein CcmC
YP_002359923.1	TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); KEGG: shn:Shewana3_0228 heme exporter protein D (CcmD)
YP_002359924.1	CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane
YP_002359925.1	KEGG: shn:Shewana3_0226 hypothetical protein
YP_002359926.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_002359927.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_002359928.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_002359929.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_002359930.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_002359931.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_002359932.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_002359933.1	late assembly protein
YP_002359934.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_002359935.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_002359936.1	binds 5S rRNA along with protein L5 and L25
YP_002359937.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_002359938.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_002359939.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_002359940.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_002359941.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_002359942.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_002359943.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_002359944.1	one of the stabilizing components for the large ribosomal subunit
YP_002359945.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_002359946.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_002359947.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_002359948.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_002359949.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_002359950.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_002359951.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_002359952.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_002359953.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_002359954.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_002359955.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_002359956.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_002359957.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_002359958.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_002359959.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_002359960.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_002359961.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_002359962.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_002359963.1	binds directly to 23S ribosomal RNA
YP_002359964.1	TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: shw:Sputw3181_0144 NusG antitermination factor
YP_002359965.1	forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_002359966.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_002359967.1	catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis
YP_002359968.1	catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon
YP_002359969.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_002359970.1	PFAM: RNP-1 like RNA-binding protein; KEGG: shm:Shewmr7_0175 RNP-1 like RNA-binding protein
YP_002359971.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_002359972.1	catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs
YP_002359973.1	PFAM: transposase IS4 family protein; KEGG: son:SO_3544 ISSod7, transposase
YP_002359974.1	negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis
YP_002359975.1	PFAM: fatty acid desaturase; KEGG: shw:Sputw3181_3679 stearoyl-CoA 9-desaturase
YP_002359976.1	catalyzes the formation of selenophosphate from selenide and ATP
YP_002359977.1	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
YP_002359978.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: shw:Sputw3181_3682 phospholipid/glycerol acyltransferase
YP_002359979.1	PFAM: regulatory protein TetR; KEGG: shw:Sputw3181_3683 transcriptional regulator, TetR family
YP_002359981.1	PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_3684 GCN5-related N-acetyltransferase
YP_002359982.1	TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: spc:Sputcn32_3548 3'(2'),5'-bisphosphate nucleotidase
YP_002359983.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002359986.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters
YP_002359987.1	PFAM: protein of unknown function DUF214; KEGG: son:SO_4584 cell division ABC transporter, permease protein FtsX
YP_002359988.1	KEGG: shw:Sputw3181_3912 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002359989.1	KEGG: shm:Shewmr7_3847 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase
YP_002359990.1	TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: spc:Sputcn32_0288 putative methyltransferase
YP_002359991.1	PFAM: protein of unknown function DUF1145; KEGG: shw:Sputw3181_3915 protein of unknown function DUF1145
YP_002359992.1	PFAM: NapC/NirT cytochrome c domain protein; KEGG: saz:Sama_3471 tetraheme cytochrome c
YP_002359993.1	KEGG: son:SO_A0158 hypothetical protein
YP_002359994.1	KEGG: son:SO_A0157 hypothetical protein
YP_002359995.1	KEGG: son:SO_A0156 hypothetical protein
YP_002359996.1	KEGG: son:SO_A0155 hypothetical protein
YP_002359997.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO_A0154 heavy metal efflux protein, putative
YP_002359998.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SO_A0153 CzcA family heavy metal efflux protein
YP_002359999.1	PFAM: ribonuclease T2; KEGG: spc:Sputcn32_3777 ribonuclease T2
YP_002360000.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002360001.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: shm:Shewmr7_3859 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002360002.1	TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: she:Shewmr4_3787 aromatic amino acid transporter
YP_002360003.1	PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA
YP_002360004.1	Represses a number of genes involved in the response to DNA damage
YP_002360005.1	KEGG: shw:Sputw3181_0134 hypothetical protein
YP_002360006.1	KEGG: shm:Shewmr7_3864 cytochrome c oxidase, subunit II; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region
YP_002360007.1	TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: son:SO_4607 cytochrome c oxidase, subunit I
YP_002360008.1	involved in the insertion of copper into subunit I of cytochrome C oxidase
YP_002360009.1	PFAM: cytochrome c oxidase subunit III; KEGG: shm:Shewmr7_3867 cytochrome c oxidase, subunit III
YP_002360010.1	KEGG: swd:Swoo_0174 hypothetical protein
YP_002360011.1	KEGG: spc:Sputcn32_3786 hypothetical protein
YP_002360012.1	KEGG: son:SO_4612 hypothetical protein
YP_002360013.1	PFAM: cytochrome oxidase assembly; KEGG: son:SO_4613 cytochrome oxidase assembly protein, putative
YP_002360014.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_002360015.1	PFAM: electron transport protein SCO1/SenC; KEGG: shw:Sputw3181_0125 electron transport protein SCO1/SenC
YP_002360016.1	PFAM: polysaccharide deacetylase; KEGG: she:Shewmr4_3801 polysaccharide deacetylase
YP_002360017.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: spc:Sputcn32_3792 MATE efflux family protein
YP_002360018.1	PFAM: peptidase S15; peptidase S9 prolyl oligopeptidase active site domain protein; phospholipase/Carboxylesterase; KEGG: she:Shewmr4_3803 peptidase S9 prolyl oligopeptidase
YP_002360019.1	cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source
YP_002360020.1	KEGG: spc:Sputcn32_3800 competence protein ComF
YP_002360021.1	KEGG: shn:Shewana3_4010 BioH protein; TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold
YP_002360022.1	KEGG: she:Shewmr4_3807 hypothetical protein
YP_002360023.1	PFAM: sulfatase; KEGG: son:SO_4628 sulfatase
YP_002360024.1	PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: shw:Sputw3181_0109 RNA binding S1 domain protein
YP_002360025.1	TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: she:Shewmr4_3810 transcription elongation factor GreB
YP_002360026.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: shn:Shewana3_4015 response regulator receiver modulated diguanylate cyclase
YP_002360027.1	KEGG: shn:Shewana3_4016 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002360028.1	part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation
YP_002360029.1	membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR
YP_002360030.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shn:Shewana3_4019 methyl-accepting chemotaxis sensory transducer
YP_002360031.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shn:Shewana3_4020 redoxin domain-containing protein
YP_002360032.1	KEGG: shm:Shewmr7_3906 hypothetical protein
YP_002360033.1	PFAM: Propeptide PepSY amd peptidase M4; KEGG: shn:Shewana3_4024 peptidase
YP_002360034.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: spc:Sputcn32_3852 two component transcriptional regulator
YP_002360035.1	PFAM: ATP-binding region ATPase domain protein; KEGG: spc:Sputcn32_3853 integral membrane sensor signal transduction histidine kinase
YP_002360036.1	KEGG: shw:Sputw3181_0099 hypothetical protein
YP_002360037.1	KEGG: she:Shewmr4_3820 hypothetical protein
YP_002360038.1	KEGG: shw:Sputw3181_0097 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; MASE1 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002360039.1	KEGG: shw:Sputw3181_0096 hypothetical protein
YP_002360040.1	TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: shw:Sputw3181_0095 ubiquinol oxidase, subunit II
YP_002360041.1	KEGG: shn:Shewana3_4032 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I
YP_002360042.1	TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: shw:Sputw3181_0093 cytochrome c oxidase, subunit III
YP_002360043.1	TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: shw:Sputw3181_0092 cytochrome c oxidase subunit IV
YP_002360044.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_002360045.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shw:Sputw3181_3956 redoxin domain protein
YP_002360046.1	PFAM: DSBA oxidoreductase; KEGG: shw:Sputw3181_3957 DsbA oxidoreductase
YP_002360047.1	PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: shw:Sputw3181_3958 putative suppressor for copper-sensitivity B precursor
YP_002360048.1	KEGG: spc:Sputcn32_0113 hypothetical protein
YP_002360049.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002360050.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spc:Sputcn32_0111 LysR family transcriptional regulator
YP_002360051.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: vco:VC0395_0977 antibiotic acetyltransferase
YP_002360052.1	PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_02014 amino acid ABC transporter periplasmic protein
YP_002360053.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ppg:PputGB1_0695 ECF subfamily RNA polymerase sigma-24 factor
YP_002360054.1	PFAM: FecR protein; KEGG: bur:Bcep18194_A5452 putative FecR
YP_002360055.1	PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: oan:Oant_3795 TonB-dependent receptor
YP_002360056.1	KEGG: cja:CJA_2311 putative iron uptake protein
YP_002360057.1	PFAM: PepSY-associated TM helix domain protein; KEGG: nha:Nham_3721 PepSY-associated TM helix
YP_002360058.1	KEGG: dac:Daci_3076 hypothetical protein
YP_002360059.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: hha:Hhal_0454 MotA/TolQ/ExbB proton channel
YP_002360060.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aeh:Mlg_1847 biopolymer transport protein ExbD/TolR
YP_002360061.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hha:Hhal_0452 biopolymer transport protein ExbD/TolR
YP_002360062.1	TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pla:Plav_0373 TonB family protein
YP_002360064.1	KEGG: gfo:GFO_0922 HTH_3 family transcriptional regulator protein
YP_002360065.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002360068.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: pat:Patl_1889 filamentation induced by cAMP protein Fic
YP_002360069.1	PFAM: helix-turn-helix domain protein; KEGG: ppr:PBPRA1807 putative transcriptional regulator
YP_002360070.1	KEGG: pin:Ping_0146 hypothetical protein
YP_002360071.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002360072.1	KEGG: sdn:Sden_0133 hypothetical protein
YP_002360073.1	KEGG: swd:Swoo_4371 hypothetical protein
YP_002360074.1	PFAM: transposase IS4 family protein; KEGG: shm:Shewmr7_3098 transposase, IS4 family
YP_002360075.1	TIGRFAM: CRISPR-associated protein, Csy3 family; PFAM: CRISPR-associated protein Csy3; KEGG: shn:Shewana3_3853 CRISPR-associated Csy3 family protein
YP_002360076.1	KEGG: shn:Shewana3_3854 hypothetical protein
YP_002360077.1	KEGG: shn:Shewana3_3855 hypothetical protein
YP_002360078.1	PFAM: N-6 DNA methylase; KEGG: hch:HCH_05029 type I restriction-modification system methyltransferase subunit
YP_002360079.1	PFAM: restriction modification system DNA specificity domain; KEGG: pph:Ppha_1452 restriction modification system DNA specificity domain
YP_002360080.1	PFAM: type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: hch:HCH_05026 type I site-specific restriction-modification system, R (restriction) subunit and related helicase
YP_002360081.1	PFAM: transposase IS3/IS911 family protein; KEGG: son:SO_4581 ISSod1, transposase OrfA
YP_002360083.1	KEGG: pna:Pnap_1390 hypothetical protein
YP_002360084.1	PFAM: protein of unknown function DUF955; KEGG: pmr:PMI3496 hypothetical protein
YP_002360085.1	PFAM: helix-turn-helix domain protein; KEGG: shn:Shewana3_3859 XRE family transcriptional regulator
YP_002360086.1	KEGG: shn:Shewana3_3860 hypothetical protein
YP_002360087.1	Contains selenocysteine; PFAM: helicase domain protein; KEGG: spl:Spea_3459 type III restriction protein res subunit
YP_002360088.1	KEGG: shn:Shewana3_3861 hypothetical protein
YP_002360089.1	PFAM: Integrase catalytic region; KEGG: shn:Shewana3_3862 integrase catalytic subunit
YP_002360090.1	KEGG: shn:Shewana3_3863 hypothetical protein
YP_002360091.1	PFAM: protein of unknown function DUF548; KEGG: shw:Sputw3181_3966 protein of unknown function DUF548
YP_002360092.1	PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: shw:Sputw3181_3967 diguanylate cyclase/phosphodiesterase
YP_002360093.1	PFAM: protein of unknown function DUF519; KEGG: spc:Sputcn32_0098 hypothetical protein
YP_002360094.1	PFAM: Lytic transglycosylase catalytic; KEGG: shw:Sputw3181_3969 lytic transglycosylase, catalytic
YP_002360095.1	KEGG: son:SO_4661 hypothetical protein
YP_002360096.1	PFAM: LemA family protein; KEGG: son:SO_4662 hypothetical protein
YP_002360097.1	PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; KEGG: she:Shewmr4_3833 AbgT putative transporter
YP_002360098.1	KEGG: shm:Shewmr7_3927 hypothetical protein
YP_002360099.1	KEGG: shn:Shewana3_4044 hypothetical protein
YP_002360100.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: shw:Sputw3181_3974 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
YP_002360101.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shw:Sputw3181_3975 efflux transporter, RND family, MFP subunit
YP_002360102.1	PFAM: conserved hypothetical protein; KEGG: shn:Shewana3_4047 hypothetical protein
YP_002360103.1	PFAM: methyladenine glycosylase; KEGG: shm:Shewmr7_3932 conserved hypothetical 3-methyladenine DNA glycosylase
YP_002360104.1	PFAM: Glutathione S-transferase domain; KEGG: spc:Sputcn32_0089 glutathione S-transferase domain-containing protein
YP_002360105.1	KEGG: shw:Sputw3181_3977 hypothetical protein
YP_002360106.1	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: shw:Sputw3181_3978 oligopeptidase A
YP_002360107.1	KEGG: shw:Sputw3181_3979 hypothetical protein
YP_002360108.1	KEGG: spc:Sputcn32_0085 hypothetical protein
YP_002360109.1	catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense
YP_002360110.1	KEGG: sea:SeAg_B2099 hypothetical protein
YP_002360111.1	PFAM: integrase family protein; KEGG: shw:Sputw3181_3985 phage integrase family protein
YP_002360112.1	KEGG: shw:Sputw3181_3986 hypothetical protein
YP_002360113.1	KEGG: shw:Sputw3181_3987 hypothetical protein
YP_002360114.1	KEGG: sdn:Sden_3584 hypothetical protein
YP_002360115.1	KEGG: sdn:Sden_3583 hypothetical protein
YP_002360116.1	KEGG: sdn:Sden_3581 hypothetical protein
YP_002360117.1	KEGG: sdn:Sden_3579 hypothetical protein
YP_002360118.1	KEGG: sdn:Sden_3578 hypothetical protein
YP_002360119.1	PFAM: Domain of unknown function DUF1863; KEGG: sdn:Sden_3577 hypothetical protein
YP_002360120.1	KEGG: sdn:Sden_3576 hypothetical protein
YP_002360121.1	PFAM: protein of unknown function DUF1656; KEGG: mmw:Mmwyl1_1290 hypothetical protein
YP_002360122.1	PFAM: secretion protein HlyD family protein; KEGG: abo:ABO_1136 efflux transporter, membrane fusion protein, putative
YP_002360123.1	PFAM: Fusaric acid resistance protein conserved region; KEGG: mmw:Mmwyl1_1292 fusaric acid resistance protein region
YP_002360125.1	TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: shw:Sputw3181_3994 sodium/proline symporter
YP_002360126.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_002360127.1	TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: spc:Sputcn32_0081 gamma-glutamyl phosphate reductase
YP_002360128.1	PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_3944 transcriptional regulator, XRE family
YP_002360129.1	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle
YP_002360130.1	PFAM: conserved hypothetical protein; KEGG: shw:Sputw3181_0085 conserved hypothetical protein 698
YP_002360131.1	KEGG: spc:Sputcn32_3869 hypothetical protein
YP_002360132.1	PFAM: regulatory protein LuxR; KEGG: shn:Shewana3_4063 LuxR family transcriptional regulator
YP_002360133.1	KEGG: shm:Shewmr7_3949 hypothetical protein
YP_002360134.1	KEGG: shn:Shewana3_4065 hypothetical protein
YP_002360135.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: shn:Shewana3_4066 CzcA family heavy metal efflux protein
YP_002360136.1	KEGG: shn:Shewana3_4067 hypothetical protein
YP_002360137.1	PFAM: Paraquat-inducible protein A; KEGG: shw:Sputw3181_0083 paraquat-inducible protein A
YP_002360138.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: son:SO_4711 HD domain-containing protein
YP_002360139.1	KEGG: shm:Shewmr7_3955 hypothetical protein
YP_002360140.1	KEGG: she:Shewmr4_3863 hypothetical protein
YP_002360141.1	KEGG: shm:Shewmr7_3957 hypothetical protein
YP_002360142.1	PFAM: cobalt transport protein; KEGG: she:Shewmr4_3865 cobalt transport protein
YP_002360143.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3959 ABC transporter related
YP_002360144.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shm:Shewmr7_3960 TonB-dependent receptor, plug
YP_002360145.1	TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: shw:Sputw3181_0080 isochorismate synthase
YP_002360146.1	KEGG: spc:Sputcn32_3874 hypothetical protein
YP_002360147.1	TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: shw:Sputw3181_0078 hypothetical protein
YP_002360148.1	KEGG: she:Shewmr4_3871 acetyltransferase
YP_002360149.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: shn:Shewana3_4075 ATPase domain-containing protein
YP_002360150.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: shw:Sputw3181_0075 two component, sigma54 specific, transcriptional regulator, fis family
YP_002360151.1	KEGG: shn:Shewana3_4077 extracellular solute-binding protein
YP_002360152.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shw:Sputw3181_0073 binding-protein-dependent transport systems inner membrane component
YP_002360153.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_0072 ABC transporter related
YP_002360154.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: shw:Sputw3181_0071 molybdopterin-guanine dinucleotide biosynthesis protein A
YP_002360155.1	TIGRFAM: molybdenum cofactor synthesis domain protein; molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin binding domain; molybdopterin-guanine dinucleotide biosynthesis MobB region; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: shw:Sputw3181_0070 molybdopterin-guanine dinucleotide biosynthesis protein B
YP_002360156.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_002360157.1	KEGG: shw:Sputw3181_0068 hypothetical protein
YP_002360158.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_002360159.1	PFAM: glycosyl transferase family 39; KEGG: shw:Sputw3181_0066 glycosyl transferase, family 39
YP_002360160.1	PFAM: SNARE associated Golgi protein; KEGG: shw:Sputw3181_0065 hypothetical protein
YP_002360161.1	PFAM: glycosyl transferase family 2; KEGG: shw:Sputw3181_0064 glycosyl transferase, family 2
YP_002360162.1	TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: shw:Sputw3181_0063 UDP-glucose/GDP-mannose dehydrogenase
YP_002360163.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: shw:Sputw3181_0062 NAD-dependent epimerase/dehydratase
YP_002360164.1	KEGG: shw:Sputw3181_0061 hypothetical protein
YP_002360165.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_002360166.1	PFAM: glycosyl transferase group 1; KEGG: son:SO_4682 glycosyl transferase, group 1 family protein
YP_002360167.1	PFAM: glycosyl transferase group 1; KEGG: shm:Shewmr7_3985 glycosyl transferase, group 1
YP_002360168.1	PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: son:SO_4680 hypothetical protein
YP_002360169.1	PFAM: glycosyl transferase group 1; KEGG: shw:Sputw3181_0055 glycosyl transferase, group 1
YP_002360170.1	PFAM: glycosyl transferase family 9; KEGG: spc:Sputcn32_3897 glycosyl transferase family protein
YP_002360171.1	catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position
YP_002360172.1	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: shw:Sputw3181_0052 three-deoxy-D-manno-octulosonic-acid transferase domain protein
YP_002360173.1	PFAM: regulatory protein TetR; KEGG: spc:Sputcn32_3900 TetR family transcriptional regulator
YP_002360174.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_002360175.1	converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism
YP_002360176.1	PFAM: Rhodanese domain protein; KEGG: shw:Sputw3181_0048 rhodanese domain protein
YP_002360177.1	PFAM: Rhomboid family protein; KEGG: spc:Sputcn32_3904 rhomboid family protein
YP_002360178.1	PFAM: ThiJ/PfpI domain protein; KEGG: shw:Sputw3181_0046 isoprenoid biosynthesis protein with amidotransferase-like domain
YP_002360179.1	KEGG: spc:Sputcn32_3906 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2
YP_002360180.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_002360181.1	PFAM: cytochrome c class I; KEGG: shn:Shewana3_4111 cytochrome c, class I
YP_002360182.1	KEGG: shw:Sputw3181_0042 hypothetical protein
YP_002360183.1	PFAM: protein of unknown function DUF414; KEGG: spc:Sputcn32_3911 hypothetical protein
YP_002360184.1	KEGG: shw:Sputw3181_0040 hypothetical protein
YP_002360185.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_002360186.1	catalyzes the formation of inosine from adenosine
YP_002360187.1	PFAM: protein of unknown function DUF885; KEGG: shw:Sputw3181_0037 protein of unknown function DUF885
YP_002360188.1	PFAM: alpha/beta hydrolase fold; KEGG: shw:Sputw3181_0036 alpha/beta hydrolase fold
YP_002360189.1	KEGG: spc:Sputcn32_3917 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002360190.1	TIGRFAM: cytochrome c oxidase accessory protein CcoG; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: she:Shewmr4_3916 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_002360191.1	KEGG: shw:Sputw3181_4045 hypothetical protein
YP_002360192.1	catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA
YP_002360193.1	KEGG: shw:Sputw3181_4047 hypothetical protein
YP_002360194.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_002360195.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: shw:Sputw3181_4049 transcriptional regulator, DeoR family
YP_002360196.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: son:SO_4743 TonB-dependent receptor, putative
YP_002360197.1	TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: shw:Sputw3181_4051 UDP-N-acetylglucosamine pyrophosphorylase
YP_002360198.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_002360199.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_002360200.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_002360201.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_002360202.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_002360203.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_002360204.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_002360205.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_002360206.1	PFAM: ATP synthase I chain; KEGG: son:SO_4754 ATP synthase protein I
YP_002360207.1	TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: shw:Sputw3181_4061 ParB-like partition protein
YP_002360208.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: shw:Sputw3181_4062 cobyrinic acid a,c-diamide synthase
YP_002360209.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_002360210.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_002360212.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_002360213.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_002360214.1	TIGRFAM: YidC translocase/secretase; PFAM: 60 kDa inner membrane insertion protein; KEGG: shw:Sputw3181_4092 60 kDa inner membrane insertion protein
YP_002360215.1	PFAM: protein of unknown function DUF37; KEGG: son:SO_0005 hypothetical protein
YP_002360216.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_002360217.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_002360218.1	KEGG: ppr:PBPRC0031 hypothetical protein
YP_002360219.1	KEGG: ses:SARI_00053 hypothetical protein
YP_002360220.1	Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor
YP_002360221.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ypi:YpsIP31758_2227 addiction module antitoxin
YP_002360222.1	PFAM: transposase IS4 family protein; KEGG: shm:Shewmr7_3098 transposase, IS4 family
YP_002360223.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: ppr:PBPRB1640 hypothetical protein
YP_002360224.1	PFAM: Integrase catalytic region; KEGG: pin:Ping_1815 integrase, catalytic region
YP_002360226.1	KEGG: shw:Sputw3181_1020 ISSod8, transposase
YP_002360227.1	KEGG: swd:Swoo_4101 hypothetical protein
YP_002360228.1	PFAM: Resolvase domain; KEGG: vfi:VFB15 resolvease/recombinase
YP_002360230.1	KEGG: shw:Sputw3181_1020 ISSod8, transposase
YP_002360233.1	KEGG: son:SO_A0062 hypothetical protein
YP_002360234.1	KEGG: son:SO_A0061 ParA protein, putative
YP_002360235.1	KEGG: ecf:ECH74115_B0001 hypothetical protein
YP_002360236.1	PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: rme:Rmet_4599 resolvase-like protein
YP_002360237.1	PFAM: transposase Tn3 family protein; KEGG: pap:PSPA7_5340 transposase
YP_002360238.1	PFAM: Resolvase domain; KEGG: son:SO_A0026 resolvase family site-specific recombinase
YP_002360239.1	KEGG: pmr:PMI1582 hypothetical protein
YP_002360240.1	KEGG: pmr:PMI1583 hypothetical protein
YP_002360241.1	KEGG: shn:Shewana3_0879 hypothetical protein
YP_002360242.1	KEGG: rpd:RPD_2297 hypothetical protein
YP_002360244.1	KEGG: amt:Amet_2245 hypothetical protein
YP_002360245.1	KEGG: smt:Smal_1975 hypothetical protein
YP_002360246.1	KEGG: xcv:XCVd0138 hypothetical protein
YP_002360247.1	KEGG: ngo:NGO1002 putative phage associated protein
YP_002360248.1	PFAM: ParB family protein; KEGG: son:SO_A0096 plasmid partition protein ParB
YP_002360249.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: son:SO_A0095 plasmid partition protein ParA
YP_002360250.1	KEGG: son:SO_A0094 hypothetical protein
YP_002360251.1	KEGG: son:SO_A0058 hypothetical protein
YP_002360255.1	KEGG: vvy:VVP04 putative conjugative transfer protein TraA
YP_002360256.1	TIGRFAM: type IV conjugative transfer system protein TraL; PFAM: TraL family protein; KEGG: vvy:VVP05 putative conjugative transfer protein TraL
YP_002360257.1	TIGRFAM: type IV conjugative transfer system protein TraE; PFAM: TraE family protein; KEGG: vvy:VVP06 putative conjugative transfer protein TraE
YP_002360258.1	TIGRFAM: type-F conjugative transfer system secretin TraK; KEGG: ppr:PBPRC0005 hypothetical protein
YP_002360259.1	PFAM: TraB pilus assembly family protein; KEGG: ppr:PBPRC0006 putative sex pilus assembly and synthesis protein TraB
YP_002360260.1	TIGRFAM: type IV conjugative transfer system protein TraV; PFAM: Type IV conjugative transfer system protein TraV; KEGG: ppr:PBPRC0007 hypothetical protein
YP_002360261.1	TIGRFAM: type-IV secretion system protein TraC; KEGG: ppr:PBPRC0008 putative sex pilus assembly and synthesis protein TraC
YP_002360262.1	KEGG: stm:PSLT089 conjugal transfer protein TrbI
YP_002360263.1	TIGRFAM: type-F conjugative transfer system protein TraW; KEGG: ppr:PBPRC0010 sex pilus assembly and synthesis protein TraW
YP_002360264.1	PFAM: TraU family protein; KEGG: ppr:PBPRC0011 putative sex pilus assembly and synthesis protein TraU
YP_002360265.1	TIGRFAM: type-F conjugative transfer system pilin assembly protein TrbC; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; KEGG: ppr:PBPRC0012 conjugative transfer protein TrbC
YP_002360266.1	TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell
YP_002360267.1	TIGRFAM: type-F conjugative transfer system pilin assembly protein TraF; KEGG: ppr:PBPRC0014 sex pilus assembly and synthesis protein TraF
YP_002360268.1	TIGRFAM: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB; KEGG: ppr:PBPRC0015 putative thiol-disulfide isomerase
YP_002360270.1	PFAM: TraH family protein; KEGG: vvu:VV2_0648 hypothetical protein
YP_002360271.1	PFAM: TraG domain protein; KEGG: ppr:PBPRC0016 putative sex pilus assembly and mating pair TraG
YP_002360273.1	TIGRFAM: type IV conjugative transfer system coupling protein TraD; PFAM: Type IV conjugative transfer system coupling protein TraD; KEGG: ppr:PBPRC0019 conjugative transfer protein TraD
YP_002360275.1	TIGRFAM: conjugative relaxase domain protein; conjugative transfer relaxase protein TraI; PFAM: TrwC relaxase; KEGG: ppr:PBPRC0022 DNA helicase TraI
YP_002360276.1	KEGG: son:SO_A0051 hypothetical protein
YP_002360278.1	PFAM: transposase IS4 family protein; KEGG: asa:ASA_P4G164 transposase
YP_002360279.1	PFAM: protein of unknown function DUF1603; KEGG: sdn:Sden_3270 hypothetical protein
YP_002360280.1	PFAM: integrase family protein; KEGG: son:SO_A0045 phage integrase family site specific recombinase
YP_002360281.1	PFAM: integrase family protein; KEGG: son:SO_A0044 phage integrase family site specific recombinase
YP_002360282.1	KEGG: vha:VIBHAR_p08169 type I restriction-modification system methyltransferase subunit
YP_002360283.1	PFAM: domain of unknown function DUF1738; KEGG: sew:SeSA_B0128 antirestriction protein
YP_002360284.1	KEGG: son:SO_A0036 HicB-related protein
YP_002360285.1	PFAM: GCN5-related N-acetyltransferase; KEGG: plu:plu0958 hypothetical protein
YP_002360286.1	PFAM: Protein of unknown function DUF1778; KEGG: plu:plu0959 hypothetical protein
YP_002360288.1	KEGG: see:SNSL254_p_0132 hypothetical protein
YP_002360289.1	KEGG: son:SO_A0034 hypothetical protein
YP_002360290.1	KEGG: son:SO_A0033 hypothetical protein
YP_002360291.1	KEGG: son:SO_A0032 hypothetical protein
YP_002360292.1	PFAM: ParB domain protein nuclease; KEGG: son:SO_A0031 ParB family partitioning protein
YP_002360294.1	PFAM: transposase IS3/IS911 family protein; KEGG: son:SO_4581 ISSod1, transposase OrfA
YP_002360296.1	KEGG: dps:DP2995 hypothetical protein
YP_002360297.1	KEGG: ppr:PBPRC0031 hypothetical protein
YP_002360298.1	KEGG: bth:BT_p548232 hypothetical protein
YP_002360299.1	KEGG: pde:Pden_0461 integrase, catalytic region
YP_002360300.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gvi:gll4066 putative transposase
YP_002360301.1	KEGG: abo:ABO_2714 hypothetical protein
YP_002360302.1	KEGG: vfi:VFB13 hypothetical protein
YP_002360304.1	KEGG: ecf:ECH74115_B0001 hypothetical protein
YP_002360305.1	PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: rme:Rmet_4599 resolvase-like protein
YP_002360306.1	PFAM: transposase Tn3 family protein; KEGG: rpi:Rpic_1851 transposase Tn3 family protein
YP_002360307.1	KEGG: pol:Bpro_5523 hypothetical protein
YP_002360308.1	PFAM: Hok/gef cell toxic protein; KEGG: vvu:VV2_0662 hypothetical protein
YP_002360309.1	KEGG: son:SO_A0058 hypothetical protein
YP_002360310.1	PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: vfi:VFB18 DNA-binding protein RDGA
YP_002360311.1	KEGG: vha:VIBHAR_p08218 conjugative transfer protein TraY
YP_002360312.1	KEGG: ppr:PBPRC0003 hypothetical protein
YP_002360313.1	TIGRFAM: type IV conjugative transfer system protein TraL; PFAM: TraL family protein; KEGG: vvy:VVP05 putative conjugative transfer protein TraL
YP_002360314.1	TIGRFAM: type IV conjugative transfer system protein TraE; PFAM: TraE family protein; KEGG: vvy:VVP06 putative conjugative transfer protein TraE
YP_002360315.1	TIGRFAM: type-F conjugative transfer system secretin TraK; KEGG: ppr:PBPRC0005 hypothetical protein
YP_002360316.1	PFAM: TraB pilus assembly family protein; KEGG: ppr:PBPRC0006 putative sex pilus assembly and synthesis protein TraB
YP_002360317.1	TIGRFAM: type IV conjugative transfer system protein TraV; PFAM: Type IV conjugative transfer system protein TraV; KEGG: ppr:PBPRC0007 hypothetical protein
YP_002360318.1	TIGRFAM: type-IV secretion system protein TraC; KEGG: ppr:PBPRC0008 putative sex pilus assembly and synthesis protein TraC
YP_002360319.1	KEGG: stm:PSLT089 conjugal transfer protein TrbI
YP_002360320.1	TIGRFAM: type-F conjugative transfer system protein TraW; KEGG: ppr:PBPRC0010 sex pilus assembly and synthesis protein TraW
YP_002360321.1	PFAM: TraU family protein; KEGG: ppr:PBPRC0011 putative sex pilus assembly and synthesis protein TraU
YP_002360322.1	TIGRFAM: type-F conjugative transfer system pilin assembly protein TrbC; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; KEGG: ppr:PBPRC0012 conjugative transfer protein TrbC
YP_002360323.1	TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell
YP_002360324.1	TIGRFAM: type-F conjugative transfer system pilin assembly protein TraF; KEGG: ppr:PBPRC0014 sex pilus assembly and synthesis protein TraF
YP_002360326.1	TIGRFAM: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB; KEGG: ppr:PBPRC0015 putative thiol-disulfide isomerase
YP_002360328.1	PFAM: TraH family protein; KEGG: vvu:VV2_0648 hypothetical protein
YP_002360329.1	PFAM: TraG domain protein; KEGG: ppr:PBPRC0016 putative sex pilus assembly and mating pair TraG
YP_002360331.1	TIGRFAM: type IV conjugative transfer system coupling protein TraD; PFAM: Type IV conjugative transfer system coupling protein TraD; KEGG: ppr:PBPRC0019 conjugative transfer protein TraD
YP_002360333.1	TIGRFAM: conjugative relaxase domain protein; conjugative transfer relaxase protein TraI; PFAM: TrwC relaxase; KEGG: ppr:PBPRC0022 DNA helicase TraI
YP_002360334.1	KEGG: son:SO_A0051 hypothetical protein
YP_002360335.1	KEGG: son:SO_A0051 hypothetical protein
YP_002360336.1	KEGG: vha:VIBHAR_p08169 type I restriction-modification system methyltransferase subunit
YP_002360337.1	PFAM: domain of unknown function DUF1738; KEGG: sew:SeSA_B0128 antirestriction protein
YP_002360340.1	KEGG: son:SO_A0033 hypothetical protein
YP_002360341.1	PFAM: ParB domain protein nuclease; KEGG: son:SO_A0031 ParB family partitioning protein
YP_002360343.1	KEGG: see:SNSL254_p_0132 hypothetical protein
YP_002360344.1	KEGG: son:SO_A0039 hypothetical protein
YP_002360345.1	KEGG: ppf:Pput_5032 hypothetical protein
YP_002364241.1	PFAM: domain of unknown function DUF1738; KEGG: sew:SeSA_B0128 antirestriction protein
YP_002364242.1	PFAM: Integrase catalytic region; KEGG: asa:ASA_P4G054 transposase
YP_002364243.1	KEGG: son:SO_A0051 hypothetical protein
YP_002364244.1	TIGRFAM: conjugative relaxase domain protein; conjugative transfer relaxase protein TraI; PFAM: TrwC relaxase; KEGG: ppr:PBPRC0022 DNA helicase TraI
YP_002364248.1	TIGRFAM: type IV conjugative transfer system coupling protein TraD; PFAM: Type IV conjugative transfer system coupling protein TraD; KEGG: ppr:PBPRC0019 conjugative transfer protein TraD
YP_002364250.1	PFAM: TraG domain protein; KEGG: ppr:PBPRC0016 putative sex pilus assembly and mating pair TraG
YP_002364251.1	PFAM: TraH family protein; KEGG: vvu:VV2_0648 hypothetical protein
YP_002364253.1	TIGRFAM: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB; KEGG: ppr:PBPRC0015 putative thiol-disulfide isomerase
YP_002364255.1	TIGRFAM: type-F conjugative transfer system pilin assembly protein TraF; KEGG: ppr:PBPRC0014 sex pilus assembly and synthesis protein TraF
YP_002364256.1	TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell
YP_002364257.1	TIGRFAM: type-F conjugative transfer system pilin assembly protein TrbC; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; KEGG: ppr:PBPRC0012 conjugative transfer protein TrbC
YP_002364258.1	PFAM: TraU family protein; KEGG: ppr:PBPRC0011 putative sex pilus assembly and synthesis protein TraU
YP_002364259.1	TIGRFAM: type-F conjugative transfer system protein TraW; KEGG: ppr:PBPRC0010 sex pilus assembly and synthesis protein TraW
YP_002364260.1	KEGG: stm:PSLT089 conjugal transfer protein TrbI
YP_002364261.1	TIGRFAM: type-IV secretion system protein TraC; KEGG: ppr:PBPRC0008 putative sex pilus assembly and synthesis protein TraC
YP_002364262.1	TIGRFAM: type IV conjugative transfer system protein TraV; PFAM: Type IV conjugative transfer system protein TraV; KEGG: ppr:PBPRC0007 hypothetical protein
YP_002364263.1	PFAM: TraB pilus assembly family protein; KEGG: ppr:PBPRC0006 putative sex pilus assembly and synthesis protein TraB
YP_002364264.1	TIGRFAM: type-F conjugative transfer system secretin TraK; KEGG: ppr:PBPRC0005 hypothetical protein
YP_002364265.1	TIGRFAM: type IV conjugative transfer system protein TraE; PFAM: TraE family protein; KEGG: vvy:VVP06 putative conjugative transfer protein TraE
YP_002364266.1	TIGRFAM: type IV conjugative transfer system protein TraL; PFAM: TraL family protein; KEGG: vvy:VVP05 putative conjugative transfer protein TraL
YP_002364267.1	KEGG: ppr:PBPRC0003 hypothetical protein
YP_002364268.1	KEGG: vha:VIBHAR_p08218 conjugative transfer protein TraY
YP_002364269.1	PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: vfi:VFB18 DNA-binding protein RDGA
YP_002364270.1	KEGG: son:SO_A0058 hypothetical protein
YP_002364271.1	PFAM: Hok/gef cell toxic protein; KEGG: asa:ASA_P5G151 hypothetical protein
YP_002364272.1	PFAM: Methyltransferase type 12; KEGG: slo:Shew_0602 methyltransferase type 12
YP_002364273.1	KEGG: dps:DP1919 hypothetical protein
YP_002364274.1	KEGG: dps:DP1918 hypothetical protein
YP_002364275.1	PFAM: restriction modification system DNA specificity domain; KEGG: pph:Ppha_0745 restriction modification system DNA specificity domain
YP_002364276.1	PFAM: N-6 DNA methylase; KEGG: ftn:FTN_1152 type I restriction-modification system, subunit M (methyltransferase)
YP_002364277.1	KEGG: vvy:VV2203 hypothetical protein
YP_002364278.1	PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: ftn:FTN_1155 type I restriction-modification system, subunit R (restriction)
YP_002364279.1	KEGG: spc:Sputcn32_3980 transcriptional regulator
YP_002364280.1	PFAM: regulatory protein MerR; Prophage CP4-57 regulatory; KEGG: eli:ELI_00675 hypothetical protein
YP_002364281.1	PFAM: Resolvase domain; KEGG: son:SO_A0026 resolvase family site-specific recombinase
YP_002364282.1	KEGG: xac:XAC0341 hypothetical protein
YP_002364285.1	KEGG: cco:CCC13826_0610 hypothetical protein
YP_002364287.1	KEGG: ppr:PBPRC0031 hypothetical protein
YP_002364288.1	KEGG: ses:SARI_00053 hypothetical protein
YP_002364289.1	Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor
YP_002364290.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ypi:YpsIP31758_2227 addiction module antitoxin
YP_002364291.1	KEGG: shn:Shewana3_4244 HsdR family type I site-specific deoxyribonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases
YP_002364292.1	KEGG: shw:Sputw3181_1089 hypothetical protein
YP_002364293.1	PFAM: restriction modification system DNA specificity domain; KEGG: hin:HI1286 type I restriction/modification specificity protein
YP_002364294.1	PFAM: N-6 DNA methylase; KEGG: shn:Shewana3_4240 N-6 DNA methylase
YP_002364295.1	PFAM: integrase family protein; KEGG: pin:Ping_2569 phage integrase family protein
YP_002364296.1	PFAM: protein of unknown function DUF1526; KEGG: shn:Shewana3_4223 hypothetical protein
YP_002364297.1	PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: shw:Sputw3181_1496 histone family protein nucleoid-structuring protein H-NS
YP_002364298.1	PFAM: ParB domain protein nuclease; KEGG: son:SO_A0031 ParB family partitioning protein
YP_002364299.1	KEGG: maq:Maqu_2667 HicA protein
YP_002364300.1	PFAM: HicB family protein; KEGG: maq:Maqu_2668 HicB family protein
YP_002364301.1	KEGG: son:SO_A0033 hypothetical protein