-- dump date 20140620_063802 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_748702.1 114561189 4277684 23..1408 1 NC_008345.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1408 dnaA 4277684 dnaA Shewanella frigidimarina NCIMB 400 chromosomal replication initiation protein YP_748702.1 23 D 318167 CDS YP_748703.1 114561190 4277685 1428..2528 1 NC_008345.1 KEGG: son:SO0009 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 2528 4277685 Sfri_0002 Shewanella frigidimarina NCIMB 400 DNA polymerase III subunit beta YP_748703.1 1428 D 318167 CDS YP_748704.1 114561191 4277686 2617..3699 1 NC_008345.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3699 recF 4277686 recF Shewanella frigidimarina NCIMB 400 recombination protein F YP_748704.1 2617 D 318167 CDS YP_748705.1 114561192 4277687 3715..6132 1 NC_008345.1 KEGG: son:SO0011 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 6132 4277687 Sfri_0004 Shewanella frigidimarina NCIMB 400 DNA gyrase subunit B YP_748705.1 3715 D 318167 CDS YP_748706.1 114561193 4277688 6233..7285 1 NC_008345.1 SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO0013 hypothetical protein; metal dependent phosphohydrolase 7285 4277688 Sfri_0005 Shewanella frigidimarina NCIMB 400 metal dependent phosphohydrolase YP_748706.1 6233 D 318167 CDS YP_748707.1 114561194 4277689 complement(7422..9506) 1 NC_008345.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 9506 glyS 4277689 glyS Shewanella frigidimarina NCIMB 400 glycyl-tRNA synthetase subunit beta YP_748707.1 7422 R 318167 CDS YP_748708.1 114561195 4277690 complement(9516..10421) 1 NC_008345.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 10421 glyQ 4277690 glyQ Shewanella frigidimarina NCIMB 400 glycyl-tRNA synthetase subunit alpha YP_748708.1 9516 R 318167 CDS YP_748709.1 114561196 4277691 10534..11097 1 NC_008345.1 KEGG: son:SO0016 DNA-3-methyladenine glycosidase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 11097 4277691 Sfri_0008 Shewanella frigidimarina NCIMB 400 DNA-3-methyladenine glycosylase I YP_748709.1 10534 D 318167 CDS YP_748710.1 114561197 4277692 complement(11162..14344) 1 NC_008345.1 PFAM: amidohydrolase; WD40 domain protein beta Propeller; KEGG: son:SO0017 hypothetical amidohydrolase; amidohydrolase 14344 4277692 Sfri_0009 Shewanella frigidimarina NCIMB 400 amidohydrolase YP_748710.1 11162 R 318167 CDS YP_748711.1 114561198 4277693 complement(14637..15080) 1 NC_008345.1 KEGG: son:SO0018 hypothetical protein; hypothetical protein 15080 4277693 Sfri_0010 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748711.1 14637 R 318167 CDS YP_748712.1 114561199 4277694 complement(15084..15329) 1 NC_008345.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 15329 4277694 Sfri_0011 Shewanella frigidimarina NCIMB 400 sulfur transfer protein SirA YP_748712.1 15084 R 318167 CDS YP_748713.1 114561200 4277695 complement(15577..16740) 1 NC_008345.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 16740 fadA 4277695 fadA Shewanella frigidimarina NCIMB 400 3-ketoacyl-CoA thiolase YP_748713.1 15577 R 318167 CDS YP_748714.1 114561201 4277696 complement(16763..18913) 1 NC_008345.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 18913 fadB 4277696 fadB Shewanella frigidimarina NCIMB 400 multifunctional fatty acid oxidation complex subunit alpha YP_748714.1 16763 R 318167 CDS YP_748715.1 114561202 4277697 19149..20468 1 NC_008345.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 20468 4277697 Sfri_0014 Shewanella frigidimarina NCIMB 400 proline dipeptidase YP_748715.1 19149 D 318167 CDS YP_748716.1 114561203 4277698 20461..21075 1 NC_008345.1 PFAM: protein of unknown function UPF0029; KEGG: son:SO0023 conserved hypothetical protein TIGR00257; hypothetical protein 21075 4277698 Sfri_0015 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748716.1 20461 D 318167 CDS YP_748717.1 114561204 4277699 21149..22606 1 NC_008345.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: son:SO0024 potassium uptake protein TrkH; potassium uptake protein, TrkH family protein 22606 4277699 Sfri_0016 Shewanella frigidimarina NCIMB 400 potassium uptake protein, TrkH family protein YP_748717.1 21149 D 318167 CDS YP_748718.1 114561205 4277700 22606..23136 1 NC_008345.1 KEGG: son:SO0025 protoporphyrinogen oxidase; protoporphyrinogen oxidase 23136 4277700 Sfri_0017 Shewanella frigidimarina NCIMB 400 protoporphyrinogen oxidase YP_748718.1 22606 D 318167 CDS YP_748719.1 114561206 4278295 complement(23262..23567) 1 NC_008345.1 PFAM: regulatory protein, ArsR; KEGG: son:SO0026 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 23567 4278295 Sfri_0018 Shewanella frigidimarina NCIMB 400 ArsR family transcriptional regulator YP_748719.1 23262 R 318167 CDS YP_748720.1 114561207 4278296 23766..24311 1 NC_008345.1 KEGG: son:SO0027 protoporphyrinogen oxidase; protoporphyrinogen oxidase 24311 4278296 Sfri_0019 Shewanella frigidimarina NCIMB 400 protoporphyrinogen oxidase YP_748720.1 23766 D 318167 CDS YP_748721.1 114561208 4278297 complement(24403..25845) 1 NC_008345.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: son:SO0028 potassium uptake protein TrkH; potassium uptake protein, TrkH family protein 25845 4278297 Sfri_0020 Shewanella frigidimarina NCIMB 400 potassium uptake protein, TrkH family protein YP_748721.1 24403 R 318167 CDS YP_748722.1 114561209 4278298 complement(25852..27261) 1 NC_008345.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 27261 trkA 4278298 trkA Shewanella frigidimarina NCIMB 400 potassium transporter peripheral membrane protein YP_748722.1 25852 R 318167 CDS YP_748723.1 114561210 4278299 complement(27278..28561) 1 NC_008345.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: son:SO0030 Sun protein; sun protein 28561 4278299 Sfri_0022 Shewanella frigidimarina NCIMB 400 sun protein YP_748723.1 27278 R 318167 CDS YP_748724.1 114561211 4278300 complement(28563..29519) 1 NC_008345.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: son:SO0031 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 29519 4278300 Sfri_0023 Shewanella frigidimarina NCIMB 400 methionyl-tRNA formyltransferase YP_748724.1 28563 R 318167 CDS YP_748725.1 114561212 4278301 complement(29528..30094) 1 NC_008345.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 30094 def 4278301 def Shewanella frigidimarina NCIMB 400 peptide deformylase YP_748725.1 29528 R 318167 CDS YP_748726.1 114561213 4278302 30167..31273 1 NC_008345.1 PFAM: Peptidoglycan-binding LysM; KEGG: son:SO0033 LysM domain protein; peptidoglycan-binding LysM 31273 4278302 Sfri_0025 Shewanella frigidimarina NCIMB 400 peptidoglycan-binding LysM YP_748726.1 30167 D 318167 CDS YP_748727.1 114561214 4278303 31357..32373 1 NC_008345.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: son:SO0034 DNA processing protein DprA, putative; DNA protecting protein DprA 32373 4278303 Sfri_0026 Shewanella frigidimarina NCIMB 400 DNA protecting protein DprA YP_748727.1 31357 D 318167 CDS YP_748728.1 114561215 4278304 32376..32849 1 NC_008345.1 PFAM: protein of unknown function DUF494; KEGG: son:SO0035 Smg protein; hypothetical protein 32849 4278304 Sfri_0027 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748728.1 32376 D 318167 CDS YP_748729.1 114561216 4278305 32909..33472 1 NC_008345.1 PFAM: DNA topoisomerase, type IA, zn finger domain protein; KEGG: son:SO0036 topoisomerase DNA-binding C4 zinc finger domain protein; DNA topoisomerase type IA Zn finger domain-containing protein 33472 4278305 Sfri_0028 Shewanella frigidimarina NCIMB 400 DNA topoisomerase type IA Zn finger domain-containing protein YP_748729.1 32909 D 318167 CDS YP_748730.1 114561217 4278306 33508..34074 1 NC_008345.1 PFAM: SUA5/yciO/yrdC, N-terminal domain protein; KEGG: son:SO0037 Sua5/YciO/YrdC/YwlC family protein; SUA5/yciO/yrdC domain-containing protein 34074 4278306 Sfri_0029 Shewanella frigidimarina NCIMB 400 SUA5/yciO/yrdC domain-containing protein YP_748730.1 33508 D 318167 CDS YP_748731.1 114561218 4278307 34079..35011 1 NC_008345.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 35011 4278307 Sfri_0030 Shewanella frigidimarina NCIMB 400 coproporphyrinogen III oxidase YP_748731.1 34079 D 318167 CDS YP_748732.1 114561219 4278308 complement(35008..35442) 1 NC_008345.1 PFAM: globin; KEGG: son:SO0039 hypothetical globin; globin 35442 4278308 Sfri_0031 Shewanella frigidimarina NCIMB 400 globin YP_748732.1 35008 R 318167 CDS YP_748733.1 114561220 4278309 35614..36996 1 NC_008345.1 PFAM: amidohydrolase; KEGG: pha:PSHAa1729 enzyme; amidohydrolase 36996 4278309 Sfri_0032 Shewanella frigidimarina NCIMB 400 amidohydrolase YP_748733.1 35614 D 318167 CDS YP_748734.1 114561221 4278310 37008..38264 1 NC_008345.1 PFAM: amidohydrolase; KEGG: cps:CPS_3629 amidohydrolase family protein; amidohydrolase 38264 4278310 Sfri_0033 Shewanella frigidimarina NCIMB 400 amidohydrolase YP_748734.1 37008 D 318167 CDS YP_748735.1 114561222 4278311 38321..39154 1 NC_008345.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 39154 aroE 4278311 aroE Shewanella frigidimarina NCIMB 400 shikimate 5-dehydrogenase YP_748735.1 38321 D 318167 CDS YP_748736.1 114561223 4278312 39154..39411 1 NC_008345.1 KEGG: vfi:VF2534 hypothetical protein; hypothetical protein 39411 4278312 Sfri_0035 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748736.1 39154 D 318167 CDS YP_748737.1 114561224 4278243 complement(39408..40631) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO3556 cyclic nucleotide phosphodiesterase, putative; diguanylate cyclase 40631 4278243 Sfri_0036 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_748737.1 39408 R 318167 CDS YP_748738.1 114561225 4278244 complement(40917..41462) 1 NC_008345.1 KEGG: son:SO0042 carbonic anhydrase, family 3; carbonic anhydrase 41462 4278244 Sfri_0037 Shewanella frigidimarina NCIMB 400 carbonic anhydrase YP_748738.1 40917 R 318167 CDS YP_748739.1 114561226 4278245 47851..50334 1 NC_008345.1 KEGG: son:SO4734 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 50334 4278245 Sfri_0038 Shewanella frigidimarina NCIMB 400 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_748739.1 47851 D 318167 CDS YP_748740.1 114561227 4278246 complement(50300..51274) 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO4733 lysophospholipase L2; alpha/beta hydrolase 51274 4278246 Sfri_0039 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase YP_748740.1 50300 R 318167 CDS YP_748741.1 114561228 4278247 complement(51337..53145) 1 NC_008345.1 PFAM: protein of unknown function DUF885; KEGG: son:SO4732 hypothetical protein; hypothetical protein 53145 4278247 Sfri_0040 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748741.1 51337 R 318167 CDS YP_748742.1 114561229 4278248 53362..54360 1 NC_008345.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 54360 4278248 Sfri_0041 Shewanella frigidimarina NCIMB 400 adenosine deaminase YP_748742.1 53362 D 318167 CDS YP_748743.1 114561230 4278249 complement(54434..55774) 1 NC_008345.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 55774 4278249 Sfri_0042 Shewanella frigidimarina NCIMB 400 coproporphyrinogen III oxidase YP_748743.1 54434 R 318167 CDS YP_748744.1 114561231 4278250 complement(56007..56756) 1 NC_008345.1 PFAM: protein of unknown function DUF833; KEGG: son:SO0126 hypothetical protein; hypothetical protein 56756 4278250 Sfri_0043 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748744.1 56007 R 318167 CDS YP_748745.1 114561232 4278251 complement(56812..58440) 1 NC_008345.1 KEGG: son:SO0127 hypothetical protein; hypothetical protein 58440 4278251 Sfri_0044 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748745.1 56812 R 318167 CDS YP_748746.1 114561233 4278252 58656..59312 1 NC_008345.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO0129 conserved hypothetical protein TIGR00427; multiple antibiotic resistance (MarC)-like proteins 59312 4278252 Sfri_0045 Shewanella frigidimarina NCIMB 400 multiple antibiotic resistance (MarC)-like proteins YP_748746.1 58656 D 318167 CDS YP_748747.1 114561234 4278253 59520..59837 1 NC_008345.1 hypothetical protein 59837 4278253 Sfri_0046 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748747.1 59520 D 318167 CDS YP_748748.1 114561235 4278254 59837..62674 1 NC_008345.1 PFAM: PKD domain containing protein; peptidase M6, immune inhibitor A; KEGG: son:SO0130 protease, putative; peptidase M6, immune inhibitor A 62674 4278254 Sfri_0047 Shewanella frigidimarina NCIMB 400 peptidase M6, immune inhibitor A YP_748748.1 59837 D 318167 CDS YP_748749.1 114561236 4278255 complement(62765..63379) 1 NC_008345.1 PFAM: Chorismate lyase; KEGG: son:SO0131 putative chorismate--pyruvate lyase; chorismate lyase 63379 4278255 Sfri_0048 Shewanella frigidimarina NCIMB 400 chorismate lyase YP_748749.1 62765 R 318167 CDS YP_748750.1 114561237 4278256 63506..63907 1 NC_008345.1 PFAM: flagellar basal body-associated protein FliL; KEGG: son:SO0132 flagellar protein FliL, putative; flagellar basal body-associated protein FliL-like protein 63907 4278256 Sfri_0049 Shewanella frigidimarina NCIMB 400 flagellar basal body-associated protein FliL-like protein YP_748750.1 63506 D 318167 CDS YP_748751.1 114561238 4278257 63907..64989 1 NC_008345.1 PFAM: protein of unknown function DUF890; KEGG: ppr:PBPRB0892 hypothetical SAM-dependent methyltransferase; putative SAM-dependent methyltransferase 64989 4278257 Sfri_0050 Shewanella frigidimarina NCIMB 400 putative SAM-dependent methyltransferase YP_748751.1 63907 D 318167 CDS YP_748752.1 114561239 4278258 complement(64986..65840) 1 NC_008345.1 PFAM: formate dehydrogenase, subunit FdhD; KEGG: son:SO4503 formate dehydrogenase accessory protein FdhD, putative; formate dehydrogenase subunit FdhD 65840 4278258 Sfri_0051 Shewanella frigidimarina NCIMB 400 formate dehydrogenase subunit FdhD YP_748752.1 64986 R 318167 CDS YP_748753.1 114561240 4278259 66187..66654 1 NC_008345.1 KEGG: son:SO4504 hypothetical protein; hypothetical protein 66654 4278259 Sfri_0052 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748753.1 66187 D 318167 CDS YP_748754.1 114561241 4277648 66651..67307 1 NC_008345.1 KEGG: son:SO4505 hypothetical protein; hypothetical protein 67307 4277648 Sfri_0053 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748754.1 66651 D 318167 CDS YP_748755.1 114561242 4277649 67463..69142 1 NC_008345.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4506 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 69142 4277649 Sfri_0054 Shewanella frigidimarina NCIMB 400 4Fe-4S ferredoxin YP_748755.1 67463 D 318167 CDS YP_748756.1 114561243 4277650 69153..69818 1 NC_008345.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO4507 TorA specific chaperone, putative; cytoplasmic chaperone TorD family protein 69818 4277650 Sfri_0055 Shewanella frigidimarina NCIMB 400 cytoplasmic chaperone TorD family protein YP_748756.1 69153 D 318167 CDS YP_748757.1 114561244 4277651 69869..70066 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: son:SO4508 hypothetical protein; twin-arginine translocation pathway signal 70066 4277651 Sfri_0056 Shewanella frigidimarina NCIMB 400 twin-arginine translocation pathway signal YP_748757.1 69869 D 318167 CDS YP_748758.1 114561245 4277652 70083..72932 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4509 formate dehydrogenase, alpha subunit; twin-arginine translocation pathway signal 72932 4277652 Sfri_0057 Shewanella frigidimarina NCIMB 400 twin-arginine translocation pathway signal YP_748758.1 70083 D 318167 CDS YP_748759.1 114561246 4277653 72958..73554 1 NC_008345.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4510 formate dehydrogenase, iron-sulfur subunit; 4Fe-4S ferredoxin 73554 4277653 Sfri_0058 Shewanella frigidimarina NCIMB 400 4Fe-4S ferredoxin YP_748759.1 72958 D 318167 CDS YP_748760.1 114561247 4277654 73603..74619 1 NC_008345.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO4511 formate dehydrogenase, C subunit, putative; formate dehydrogenase, gamma subunit 74619 4277654 Sfri_0059 Shewanella frigidimarina NCIMB 400 formate dehydrogenase, gamma subunit YP_748760.1 73603 D 318167 CDS YP_748761.1 114561248 4277655 74879..75268 1 NC_008345.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: ilo:IL1764 lipoprotein A family protein; rare lipoprotein A 75268 4277655 Sfri_0060 Shewanella frigidimarina NCIMB 400 rare lipoprotein A YP_748761.1 74879 D 318167 CDS YP_748762.1 114561249 4277656 75399..76208 1 NC_008345.1 hypothetical protein 76208 4277656 Sfri_0061 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748762.1 75399 D 318167 CDS YP_748763.1 114561250 4277657 76457..77254 1 NC_008345.1 KEGG: cps:CPS_2860 hypothetical protein; hypothetical protein 77254 4277657 Sfri_0062 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748763.1 76457 D 318167 CDS YP_748764.1 114561251 4277658 77363..78286 1 NC_008345.1 KEGG: jan:Jann_3567 hypothetical protein; hypothetical protein 78286 4277658 Sfri_0063 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748764.1 77363 D 318167 CDS YP_748765.1 114561252 4277659 78381..79373 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: ilo:IL1807 alpha/beta superfamily hydrolase; alpha/beta hydrolase fold 79373 4277659 Sfri_0064 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase fold YP_748765.1 78381 D 318167 CDS YP_748766.1 114561253 4277660 79500..80216 1 NC_008345.1 KEGG: cps:CPS_2539 ZIP zinc transporter family protein; ZIP zinc transporter family protein 80216 4277660 Sfri_0065 Shewanella frigidimarina NCIMB 400 ZIP zinc transporter family protein YP_748766.1 79500 D 318167 CDS YP_748767.1 114561254 4277661 80276..80662 1 NC_008345.1 KEGG: atc:AGR_C_3952 hypothetical protein; hypothetical protein 80662 4277661 Sfri_0066 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748767.1 80276 D 318167 CDS YP_748768.1 114561255 4277662 80778..81221 1 NC_008345.1 KEGG: vfi:VF1386 acetyltransferase, GNAT family; GNAT family acetyltransferase 81221 4277662 Sfri_0067 Shewanella frigidimarina NCIMB 400 GNAT family acetyltransferase YP_748768.1 80778 D 318167 CDS YP_748769.1 114561256 4277663 81492..82361 1 NC_008345.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pha:PSHAb0256 transporter involved in threonine and homoserine efflux; hypothetical protein 82361 4277663 Sfri_0068 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748769.1 81492 D 318167 CDS YP_748770.1 114561257 4277664 complement(82458..83498) 1 NC_008345.1 hypothetical protein 83498 4277664 Sfri_0069 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748770.1 82458 R 318167 CDS YP_748771.1 114561258 4277665 83717..84376 1 NC_008345.1 hypothetical protein 84376 4277665 Sfri_0070 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748771.1 83717 D 318167 CDS YP_748772.1 114561259 4278155 complement(84393..86246) 1 NC_008345.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: vfi:VF2138 two-component sensor histidine kinase; TPR repeat-containing protein 86246 4278155 Sfri_0071 Shewanella frigidimarina NCIMB 400 TPR repeat-containing protein YP_748772.1 84393 R 318167 CDS YP_748773.1 114561260 4278156 86474..86806 1 NC_008345.1 PFAM: small multidrug resistance protein; KEGG: sec:SC050 quaternary ammonium compound resistance protein; small multidrug resistance protein 86806 4278156 Sfri_0072 Shewanella frigidimarina NCIMB 400 small multidrug resistance protein YP_748773.1 86474 D 318167 CDS YP_748774.1 114561261 4278157 complement(87004..88191) 1 NC_008345.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cac:CAC3392 NADH-dependent butanol dehydrogenase; iron-containing alcohol dehydrogenase 88191 4278157 Sfri_0073 Shewanella frigidimarina NCIMB 400 iron-containing alcohol dehydrogenase YP_748774.1 87004 R 318167 CDS YP_748775.1 114561262 4278158 88420..89289 1 NC_008345.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: dps:DP1867 similar to transcription regulator (AraC-type); AraC family transcriptional regulator 89289 4278158 Sfri_0074 Shewanella frigidimarina NCIMB 400 AraC family transcriptional regulator YP_748775.1 88420 D 318167 CDS YP_748776.1 114561263 4278159 89357..89686 1 NC_008345.1 KEGG: vpa:VPA1414 hypothetical protein; hypothetical protein 89686 4278159 Sfri_0075 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748776.1 89357 D 318167 CDS YP_748777.1 114561264 4278160 90025..91362 1 NC_008345.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 91362 4278160 Sfri_0076 Shewanella frigidimarina NCIMB 400 coproporphyrinogen III oxidase YP_748777.1 90025 D 318167 CDS YP_748778.1 114561265 4278161 91451..92296 1 NC_008345.1 PFAM: PfkB domain protein; KEGG: son:SO4458 carbohydrate kinase, PfkB family; ribokinase-like domain-containing protein 92296 4278161 Sfri_0077 Shewanella frigidimarina NCIMB 400 ribokinase-like domain-containing protein YP_748778.1 91451 D 318167 CDS YP_748779.1 114561266 4278162 92590..93282 1 NC_008345.1 PFAM: 3-alpha; MOSC domain containing protein; KEGG: son:SO4456 hypothetical protein; MOSC domain-containing protein 93282 4278162 Sfri_0078 Shewanella frigidimarina NCIMB 400 MOSC domain-containing protein YP_748779.1 92590 D 318167 CDS YP_748780.1 114561267 4278163 93339..93698 1 NC_008345.1 KEGG: son:SO4455 hypothetical protein; hypothetical protein 93698 4278163 Sfri_0079 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748780.1 93339 D 318167 CDS YP_748781.1 114561268 4278164 complement(93795..95705) 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4454 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 95705 4278164 Sfri_0080 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_748781.1 93795 R 318167 CDS YP_748782.1 114561269 4278165 complement(95924..97573) 1 NC_008345.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: son:SO4453 electron transfer flavoprotein-ubiquinone oxidoreductase, putative; electron-transferring-flavoprotein dehydrogenase 97573 4278165 Sfri_0081 Shewanella frigidimarina NCIMB 400 electron-transferring-flavoprotein dehydrogenase YP_748782.1 95924 R 318167 CDS YP_748783.1 114561270 4278166 97897..98910 1 NC_008345.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 98910 moaA 4278166 moaA Shewanella frigidimarina NCIMB 400 molybdenum cofactor biosynthesis protein A YP_748783.1 97897 D 318167 CDS YP_748784.1 114561271 4278167 98997..99473 1 NC_008345.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 99473 moaC 4278167 moaC Shewanella frigidimarina NCIMB 400 molybdenum cofactor biosynthesis protein MoaC YP_748784.1 98997 D 318167 CDS YP_748785.1 114561272 4278168 99538..99786 1 NC_008345.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: son:SO4450 molybdenum cofactor biosynthesis protein D; molybdopterin converting factor subunit 1 99786 4278168 Sfri_0084 Shewanella frigidimarina NCIMB 400 molybdopterin converting factor subunit 1 YP_748785.1 99538 D 318167 CDS YP_748786.1 114561273 4278169 99788..100258 1 NC_008345.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: son:SO4449 molybdenum cofactor biosynthesis protein E; molybdopterin biosynthesis MoaE 100258 4278169 Sfri_0085 Shewanella frigidimarina NCIMB 400 molybdopterin biosynthesis MoaE YP_748786.1 99788 D 318167 CDS YP_748787.1 114561274 4278170 100290..101141 1 NC_008345.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO4448 molybdenum ABC transporter, periplasmic molybdenum-binding protein; molybdenum ABC transporter, periplasmic molybdate-binding protein 101141 4278170 Sfri_0086 Shewanella frigidimarina NCIMB 400 molybdenum ABC transporter, periplasmic molybdate-binding protein YP_748787.1 100290 D 318167 CDS YP_748788.1 114561275 4278171 101141..101821 1 NC_008345.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4447 molybdenum ABC transporter, permease protein; molybdate ABC transporter inner membrane subunit 101821 4278171 Sfri_0087 Shewanella frigidimarina NCIMB 400 molybdate ABC transporter inner membrane subunit YP_748788.1 101141 D 318167 CDS YP_748789.1 114561276 4278260 101802..102923 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4446 molybdenum ABC transporter, ATP-binding protein; ABC transporter 102923 4278260 Sfri_0088 Shewanella frigidimarina NCIMB 400 ABC transporter YP_748789.1 101802 D 318167 CDS YP_748790.1 114561277 4278261 103294..103815 1 NC_008345.1 KEGG: son:SO4429 hypothetical protein; hypothetical protein 103815 4278261 Sfri_0089 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748790.1 103294 D 318167 CDS YP_748791.1 114561278 4278262 103823..104506 1 NC_008345.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4428 DNA-binding response regulator; two component transcriptional regulator, winged helix family protein 104506 4278262 Sfri_0090 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, winged helix family protein YP_748791.1 103823 D 318167 CDS YP_748792.1 114561279 4278263 104574..105815 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4427 sensor histidine kinase; sensor signal transduction histidine kinase 105815 4278263 Sfri_0091 Shewanella frigidimarina NCIMB 400 sensor signal transduction histidine kinase YP_748792.1 104574 D 318167 CDS YP_748793.1 114561280 4278264 105856..106533 1 NC_008345.1 TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: pha:PSHAa1657 23S rRNA pseudouridylate synthase; pseudouridine synthase Rlu family protein 106533 4278264 Sfri_0092 Shewanella frigidimarina NCIMB 400 pseudouridine synthase Rlu family protein YP_748793.1 105856 D 318167 CDS YP_748794.1 114561281 4278265 complement(106610..107890) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4425 GGDEF family protein; diguanylate cyclase 107890 4278265 Sfri_0093 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_748794.1 106610 R 318167 CDS YP_748795.1 114561282 4278266 107995..108162 1 NC_008345.1 PFAM: protein of unknown function UPF0057; KEGG: vpa:VPA0409 plasma membrane protein involved in salt tolerance; hypothetical protein 108162 4278266 Sfri_0094 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748795.1 107995 D 318167 CDS YP_748796.1 114561283 4278267 108277..108483 1 NC_008345.1 KEGG: son:SO4421 hypothetical protein; hypothetical protein 108483 4278267 Sfri_0095 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748796.1 108277 D 318167 CDS YP_748797.1 114561284 4278268 complement(108516..109286) 1 NC_008345.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 109286 4278268 Sfri_0096 Shewanella frigidimarina NCIMB 400 molybdopterin biosynthesis protein MoeB YP_748797.1 108516 R 318167 CDS YP_748798.1 114561285 4278269 complement(109294..110547) 1 NC_008345.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: son:SO0138 molybdopterin biosynthesis MoeA protein; molybdenum cofactor synthesis domain-containing protein 110547 4278269 Sfri_0097 Shewanella frigidimarina NCIMB 400 molybdenum cofactor synthesis domain-containing protein YP_748798.1 109294 R 318167 CDS YP_748799.1 114561286 4278270 110654..110977 1 NC_008345.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: son:SO0145 hypothetical URI domain endonuclease; excinuclease ABC subunit C 110977 4278270 Sfri_0098 Shewanella frigidimarina NCIMB 400 excinuclease ABC subunit C YP_748799.1 110654 D 318167 CDS YP_748800.1 114561287 4278271 111080..111973 1 NC_008345.1 KEGG: hch:HCH_00813 hypothetical protein; hypothetical protein 111973 4278271 Sfri_0099 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748800.1 111080 D 318167 CDS YP_748801.1 114561288 4278272 complement(112015..113874) 1 NC_008345.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: son:SO0152 hypothetical carboxypeptidase; peptidase M14, carboxypeptidase A 113874 4278272 Sfri_0100 Shewanella frigidimarina NCIMB 400 peptidase M14, carboxypeptidase A YP_748801.1 112015 R 318167 CDS YP_748802.1 114561289 4278273 complement(114063..115604) 1 NC_008345.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 115604 4278273 Sfri_0101 Shewanella frigidimarina NCIMB 400 phosphoenolpyruvate carboxykinase YP_748802.1 114063 R 318167 CDS YP_748803.1 114561290 4278274 complement(115874..116734) 1 NC_008345.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 116734 hslO 4278274 hslO Shewanella frigidimarina NCIMB 400 Hsp33-like chaperonin YP_748803.1 115874 R 318167 CDS YP_748804.1 114561291 4278275 complement(116760..117158) 1 NC_008345.1 PFAM: RNA-binding S4 domain protein; KEGG: son:SO0164 heat shock protein 15; RNA-binding S4 domain-containing protein 117158 4278275 Sfri_0103 Shewanella frigidimarina NCIMB 400 RNA-binding S4 domain-containing protein YP_748804.1 116760 R 318167 CDS YP_748805.1 114561292 4278276 117423..118337 1 NC_008345.1 TIGRFAM: general secretion pathway protein C; KEGG: son:SO0165 general secretion pathway protein C; general secretion pathway protein C 118337 4278276 Sfri_0104 Shewanella frigidimarina NCIMB 400 general secretion pathway protein C YP_748805.1 117423 D 318167 CDS YP_748806.1 114561293 4278277 118362..120494 1 NC_008345.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: son:SO0166 general secretion pathway protein D; general secretion pathway protein D 120494 4278277 Sfri_0105 Shewanella frigidimarina NCIMB 400 general secretion pathway protein D YP_748806.1 118362 D 318167 CDS YP_748807.1 114561294 4277176 120502..122046 1 NC_008345.1 KEGG: son:SO0167 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E 122046 4277176 Sfri_0106 Shewanella frigidimarina NCIMB 400 general secretory pathway protein E YP_748807.1 120502 D 318167 CDS YP_748808.1 114561295 4277177 122050..123282 1 NC_008345.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: son:SO0168 general secretion pathway protein F; general secretion pathway protein F 123282 4277177 Sfri_0107 Shewanella frigidimarina NCIMB 400 general secretion pathway protein F YP_748808.1 122050 D 318167 CDS YP_748809.1 114561296 4277178 123379..123813 1 NC_008345.1 TIGRFAM: general secretion pathway protein G; PFAM: methylation site containing protein; Bacterial type II secretion system protein G; KEGG: son:SO0169 general secretion pathway protein G; general secretion pathway protein G 123813 4277178 Sfri_0108 Shewanella frigidimarina NCIMB 400 general secretion pathway protein G YP_748809.1 123379 D 318167 CDS YP_748810.1 114561297 4277179 123815..124387 1 NC_008345.1 TIGRFAM: general secretion pathway protein H; Prepilin-type cleavage/methylation-like; KEGG: son:SO0170 general secretion pathway protein H; general secretion pathway protein H 124387 4277179 Sfri_0109 Shewanella frigidimarina NCIMB 400 general secretion pathway protein H YP_748810.1 123815 D 318167 CDS YP_748811.1 114561298 4277180 124380..124817 1 NC_008345.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; methylation site containing protein; KEGG: son:SO0171 general secretion pathway protein I; general secretion pathway protein I 124817 4277180 Sfri_0110 Shewanella frigidimarina NCIMB 400 general secretion pathway protein I YP_748811.1 124380 D 318167 CDS YP_748812.1 114561299 4277181 124798..125508 1 NC_008345.1 TIGRFAM: general secretion pathway protein J; PFAM: methylation site containing protein; KEGG: son:SO0172 general secretion pathway protein J; general secretion pathway protein J 125508 4277181 Sfri_0111 Shewanella frigidimarina NCIMB 400 general secretion pathway protein J YP_748812.1 124798 D 318167 CDS YP_748813.1 114561300 4277182 125508..126494 1 NC_008345.1 PFAM: General secretion pathway protein K; KEGG: son:SO0173 general secretion pathway protein K; general secretion pathway protein K 126494 4277182 Sfri_0112 Shewanella frigidimarina NCIMB 400 general secretion pathway protein K YP_748813.1 125508 D 318167 CDS YP_748814.1 114561301 4277183 126546..127751 1 NC_008345.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: son:SO0174 general secretion pathway protein L; general secretion pathway protein L 127751 4277183 Sfri_0113 Shewanella frigidimarina NCIMB 400 general secretion pathway protein L YP_748814.1 126546 D 318167 CDS YP_748815.1 114561302 4277184 127753..128229 1 NC_008345.1 PFAM: General secretion pathway M protein; KEGG: son:SO0175 general secretion pathway protein M; general secretion pathway M protein 128229 4277184 Sfri_0114 Shewanella frigidimarina NCIMB 400 general secretion pathway M protein YP_748815.1 127753 D 318167 CDS YP_748816.1 114561303 4277185 128239..129000 1 NC_008345.1 PFAM: type II secretion system protein N; KEGG: son:SO0176 general secretion pathway protein N; type II secretion system protein N 129000 4277185 Sfri_0115 Shewanella frigidimarina NCIMB 400 type II secretion system protein N YP_748816.1 128239 D 318167 CDS YP_748817.1 114561304 4277186 complement(129169..129834) 1 NC_008345.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0177 HAD-superfamily hydrolase, subfamily IA, variant 3 protein family; HAD family hydrolase 129834 4277186 Sfri_0116 Shewanella frigidimarina NCIMB 400 HAD family hydrolase YP_748817.1 129169 R 318167 CDS YP_748818.1 114561305 4277187 129912..130499 1 NC_008345.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 130499 nudE 4277187 nudE Shewanella frigidimarina NCIMB 400 ADP-ribose diphosphatase NudE YP_748818.1 129912 D 318167 CDS YP_748819.1 114561306 4277188 130616..131425 1 NC_008345.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: son:SO0191 cysQ protein; 3'(2'),5'-bisphosphate nucleotidase 131425 4277188 Sfri_0118 Shewanella frigidimarina NCIMB 400 3'(2'),5'-bisphosphate nucleotidase YP_748819.1 130616 D 318167 CDS YP_748820.1 114561307 4277189 complement(131666..132766) 1 NC_008345.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 132766 4277189 Sfri_0119 Shewanella frigidimarina NCIMB 400 tRNA 2-selenouridine synthase YP_748820.1 131666 R 318167 CDS YP_748821.1 114561308 4277190 complement(132766..133821) 1 NC_008345.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 133821 4277190 Sfri_0120 Shewanella frigidimarina NCIMB 400 selenophosphate synthetase YP_748821.1 132766 R 318167 CDS YP_748822.1 114561309 4277191 134018..134632 1 NC_008345.1 KEGG: son:SO0193 transcriptional regulator, TetR family; putative transcriptional regulator, TetR family protein 134632 4277191 Sfri_0121 Shewanella frigidimarina NCIMB 400 putative transcriptional regulator, TetR family protein YP_748822.1 134018 D 318167 CDS YP_748823.1 114561310 4277192 134619..136475 1 NC_008345.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: son:SO0194 acyltransferase family protein; phospholipid/glycerol acyltransferase 136475 4277192 Sfri_0122 Shewanella frigidimarina NCIMB 400 phospholipid/glycerol acyltransferase YP_748823.1 134619 D 318167 CDS YP_748824.1 114561311 4277105 complement(136557..137666) 1 NC_008345.1 PFAM: fatty acid desaturase; KEGG: son:SO0197 fatty acid desaturase, family 1; stearoyl-CoA 9-desaturase 137666 4277105 Sfri_0123 Shewanella frigidimarina NCIMB 400 stearoyl-CoA 9-desaturase YP_748824.1 136557 R 318167 CDS YP_748825.1 114561312 4277106 137823..138440 1 NC_008345.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 138440 4277106 Sfri_0124 Shewanella frigidimarina NCIMB 400 DNA-binding transcriptional repressor FabR YP_748825.1 137823 D 318167 CDS YP_748826.1 114561313 4277107 complement(138520..139617) 1 NC_008345.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 139617 4277107 Sfri_0125 Shewanella frigidimarina NCIMB 400 tRNA (uracil-5-)-methyltransferase YP_748826.1 138520 R 318167 CDS YP_748827.1 114561314 4277108 139747..140526 1 NC_008345.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 140526 4277108 Sfri_0126 Shewanella frigidimarina NCIMB 400 glutamate racemase YP_748827.1 139747 D 318167 CDS YP_748828.1 114561315 4277109 complement(140574..141017) 1 NC_008345.1 PFAM: RNP-1 like RNA-binding protein; KEGG: son:SO0208 RNA-binding protein; RNP-1 like RNA-binding protein 141017 4277109 Sfri_0127 Shewanella frigidimarina NCIMB 400 RNP-1 like RNA-binding protein YP_748828.1 140574 R 318167 CDS YP_748829.1 114561316 4277110 147215..147340 1 NC_008345.1 KEGG: son:SOA0117 hypothetical protein; hypothetical protein 147340 4277110 Sfri_0128 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748829.1 147215 D 318167 CDS YP_748830.1 114561317 4277111 complement(147337..147870) 1 NC_008345.1 KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB 147870 4277111 Sfri_0129 Shewanella frigidimarina NCIMB 400 ISSod10, transposase OrfB YP_748830.1 147337 R 318167 CDS YP_748831.1 114561318 4277112 complement(147884..148363) 1 NC_008345.1 KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA 148363 4277112 Sfri_0130 Shewanella frigidimarina NCIMB 400 ISSod10, transposase OrfA YP_748831.1 147884 R 318167 CDS YP_748832.1 114561319 4277113 148584..149600 1 NC_008345.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 149600 murB 4277113 murB Shewanella frigidimarina NCIMB 400 UDP-N-acetylenolpyruvoylglucosamine reductase YP_748832.1 148584 D 318167 CDS YP_748833.1 114561320 4277114 149597..150559 1 NC_008345.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 150559 4277114 Sfri_0132 Shewanella frigidimarina NCIMB 400 biotin--protein ligase YP_748833.1 149597 D 318167 CDS YP_748834.1 114561321 4277115 complement(150596..151546) 1 NC_008345.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 151546 4277115 Sfri_0133 Shewanella frigidimarina NCIMB 400 pantothenate kinase YP_748834.1 150596 R 318167 CDS YP_748835.1 114561322 4277116 152246..153430 1 NC_008345.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 153430 4277116 Sfri_0134 Shewanella frigidimarina NCIMB 400 elongation factor Tu YP_748835.1 152246 D 318167 CDS YP_748836.1 114561323 4277117 153699..154070 1 NC_008345.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 154070 secE 4277117 secE Shewanella frigidimarina NCIMB 400 preprotein translocase subunit SecE YP_748836.1 153699 D 318167 CDS YP_748837.1 114561324 4277118 154081..154632 1 NC_008345.1 KEGG: son:SO0219 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; NusG antitermination factor 154632 4277118 Sfri_0136 Shewanella frigidimarina NCIMB 400 NusG antitermination factor YP_748837.1 154081 D 318167 CDS YP_748838.1 114561325 4277119 154762..155190 1 NC_008345.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 155190 rplK 4277119 rplK Shewanella frigidimarina NCIMB 400 50S ribosomal protein L11 YP_748838.1 154762 D 318167 CDS YP_748839.1 114561326 4277120 155195..155896 1 NC_008345.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 155896 rplA 4277120 rplA Shewanella frigidimarina NCIMB 400 50S ribosomal protein L1 YP_748839.1 155195 D 318167 CDS YP_748840.1 114561327 4277121 156173..156673 1 NC_008345.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 156673 rplJ 4277121 rplJ Shewanella frigidimarina NCIMB 400 50S ribosomal protein L10 YP_748840.1 156173 D 318167 CDS YP_748841.1 114561328 4277122 156728..157093 1 NC_008345.1 PFAM: ribosomal protein L7/L12; KEGG: son:SO0223 50S ribosomal protein L7/L12; 50S ribosomal protein L7/L12 157093 4277122 Sfri_0140 Shewanella frigidimarina NCIMB 400 50S ribosomal protein L7/L12 YP_748841.1 156728 D 318167 CDS YP_748842.1 114561329 4277806 157329..161360 1 NC_008345.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 161360 rpoB 4277806 rpoB Shewanella frigidimarina NCIMB 400 DNA-directed RNA polymerase subunit beta YP_748842.1 157329 D 318167 CDS YP_748843.1 114561330 4277807 161443..165669 1 NC_008345.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 165669 4277807 Sfri_0142 Shewanella frigidimarina NCIMB 400 DNA-directed RNA polymerase subunit beta' YP_748843.1 161443 D 318167 CDS YP_748844.1 114561331 4277808 165847..166221 1 NC_008345.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 166221 rpsL 4277808 rpsL Shewanella frigidimarina NCIMB 400 30S ribosomal protein S12 YP_748844.1 165847 D 318167 CDS YP_748845.1 114561332 4277809 166304..166774 1 NC_008345.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 166774 4277809 Sfri_0144 Shewanella frigidimarina NCIMB 400 30S ribosomal protein S7 YP_748845.1 166304 D 318167 CDS YP_748846.1 114561333 4277810 166853..168949 1 NC_008345.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 168949 4277810 Sfri_0145 Shewanella frigidimarina NCIMB 400 elongation factor G YP_748846.1 166853 D 318167 CDS YP_748847.1 114561334 4277811 169019..170203 1 NC_008345.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 170203 4277811 Sfri_0146 Shewanella frigidimarina NCIMB 400 elongation factor Tu YP_748847.1 169019 D 318167 CDS YP_748848.1 114561335 4277812 170557..170868 1 NC_008345.1 PFAM: ribosomal protein S10; KEGG: son:SO0230 30S ribosomal protein S10; 30S ribosomal protein S10 170868 4277812 Sfri_0147 Shewanella frigidimarina NCIMB 400 30S ribosomal protein S10 YP_748848.1 170557 D 318167 CDS YP_748849.1 114561336 4277813 170896..171534 1 NC_008345.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 171534 rplC 4277813 rplC Shewanella frigidimarina NCIMB 400 50S ribosomal protein L3 YP_748849.1 170896 D 318167 CDS YP_748850.1 114561337 4277814 171552..172157 1 NC_008345.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 172157 rplD 4277814 rplD Shewanella frigidimarina NCIMB 400 50S ribosomal protein L4 YP_748850.1 171552 D 318167 CDS YP_748851.1 114561338 4277815 172154..172456 1 NC_008345.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 172456 rplW 4277815 rplW Shewanella frigidimarina NCIMB 400 50S ribosomal protein L23 YP_748851.1 172154 D 318167 CDS YP_748852.1 114561339 4277816 172473..173297 1 NC_008345.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 173297 rplB 4277816 rplB Shewanella frigidimarina NCIMB 400 50S ribosomal protein L2 YP_748852.1 172473 D 318167 CDS YP_748853.1 114561340 4277817 173312..173590 1 NC_008345.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 173590 rpsS 4277817 rpsS Shewanella frigidimarina NCIMB 400 30S ribosomal protein S19 YP_748853.1 173312 D 318167 CDS YP_748854.1 114561341 4277818 173606..173938 1 NC_008345.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 173938 rplV 4277818 rplV Shewanella frigidimarina NCIMB 400 50S ribosomal protein L22 YP_748854.1 173606 D 318167 CDS YP_748855.1 114561342 4277819 173951..174640 1 NC_008345.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 174640 rpsC 4277819 rpsC Shewanella frigidimarina NCIMB 400 30S ribosomal protein S3 YP_748855.1 173951 D 318167 CDS YP_748856.1 114561343 4277820 174652..175062 1 NC_008345.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 175062 rplP 4277820 rplP Shewanella frigidimarina NCIMB 400 50S ribosomal protein L16 YP_748856.1 174652 D 318167 CDS YP_748857.1 114561344 4277821 175062..175253 1 NC_008345.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 175253 4277821 Sfri_0156 Shewanella frigidimarina NCIMB 400 50S ribosomal protein L29 YP_748857.1 175062 D 318167 CDS YP_748858.1 114561345 4277822 175253..175501 1 NC_008345.1 PFAM: ribosomal protein S17; KEGG: son:SO0240 30S ribosomal subunit protein S17; 30S ribosomal protein S17 175501 4277822 Sfri_0157 Shewanella frigidimarina NCIMB 400 30S ribosomal protein S17 YP_748858.1 175253 D 318167 CDS YP_748859.1 114561346 4277228 175678..176046 1 NC_008345.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 176046 rplN 4277228 rplN Shewanella frigidimarina NCIMB 400 50S ribosomal protein L14 YP_748859.1 175678 D 318167 CDS YP_748860.1 114561347 4277229 176057..176371 1 NC_008345.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 176371 rplX 4277229 rplX Shewanella frigidimarina NCIMB 400 50S ribosomal protein L24 YP_748860.1 176057 D 318167 CDS YP_748861.1 114561348 4277230 176385..176924 1 NC_008345.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 176924 rplE 4277230 rplE Shewanella frigidimarina NCIMB 400 50S ribosomal protein L5 YP_748861.1 176385 D 318167 CDS YP_748862.1 114561349 4277231 176935..177240 1 NC_008345.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 177240 rpsN 4277231 rpsN Shewanella frigidimarina NCIMB 400 30S ribosomal protein S14 YP_748862.1 176935 D 318167 CDS YP_748863.1 114561350 4277232 177265..177657 1 NC_008345.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 177657 rpsH 4277232 rpsH Shewanella frigidimarina NCIMB 400 30S ribosomal protein S8 YP_748863.1 177265 D 318167 CDS YP_748864.1 114561351 4277233 177668..178201 1 NC_008345.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 178201 rplF 4277233 rplF Shewanella frigidimarina NCIMB 400 50S ribosomal protein L6 YP_748864.1 177668 D 318167 CDS YP_748865.1 114561352 4277234 178212..178562 1 NC_008345.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 178562 rplR 4277234 rplR Shewanella frigidimarina NCIMB 400 50S ribosomal protein L18 YP_748865.1 178212 D 318167 CDS YP_748866.1 114561353 4277235 178575..179078 1 NC_008345.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 179078 rpsE 4277235 rpsE Shewanella frigidimarina NCIMB 400 30S ribosomal protein S5 YP_748866.1 178575 D 318167 CDS YP_748867.1 114561354 4277236 179085..179273 1 NC_008345.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 179273 rpmD 4277236 rpmD Shewanella frigidimarina NCIMB 400 50S ribosomal protein L30 YP_748867.1 179085 D 318167 CDS YP_748868.1 114561355 4277237 179273..179707 1 NC_008345.1 late assembly protein; 50S ribosomal protein L15 179707 rplO 4277237 rplO Shewanella frigidimarina NCIMB 400 50S ribosomal protein L15 YP_748868.1 179273 D 318167 CDS YP_748869.1 114561356 4277238 179715..181055 1 NC_008345.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 181055 secY 4277238 secY Shewanella frigidimarina NCIMB 400 preprotein translocase subunit SecY YP_748869.1 179715 D 318167 CDS YP_748870.1 114561357 4277239 181079..181192 1 NC_008345.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 181192 rpmJ 4277239 rpmJ Shewanella frigidimarina NCIMB 400 50S ribosomal protein L36 YP_748870.1 181079 D 318167 CDS YP_748871.1 114561358 4277240 181309..181665 1 NC_008345.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 181665 rpsM 4277240 rpsM Shewanella frigidimarina NCIMB 400 30S ribosomal protein S13 YP_748871.1 181309 D 318167 CDS YP_748872.1 114561359 4277241 181683..182075 1 NC_008345.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 182075 4277241 Sfri_0171 Shewanella frigidimarina NCIMB 400 30S ribosomal protein S11 YP_748872.1 181683 D 318167 CDS YP_748873.1 114561360 4277242 182108..182728 1 NC_008345.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 182728 rpsD 4277242 rpsD Shewanella frigidimarina NCIMB 400 30S ribosomal protein S4 YP_748873.1 182108 D 318167 CDS YP_748874.1 114561361 4277243 182753..183742 1 NC_008345.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 183742 4277243 Sfri_0173 Shewanella frigidimarina NCIMB 400 DNA-directed RNA polymerase subunit alpha YP_748874.1 182753 D 318167 CDS YP_748875.1 114561362 4277244 183783..184178 1 NC_008345.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 184178 rplQ 4277244 rplQ Shewanella frigidimarina NCIMB 400 50S ribosomal protein L17 YP_748875.1 183783 D 318167 CDS YP_748876.1 114561363 4277245 complement(185244..185729) 1 NC_008345.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 185729 4277245 Sfri_0175 Shewanella frigidimarina NCIMB 400 cytochrome c-type biogenesis protein CcmE YP_748876.1 185244 R 318167 CDS YP_748877.1 114561364 4277578 complement(185713..185925) 1 NC_008345.1 PFAM: Heme exporter protein D (CcmD); KEGG: son:SO0260 heme exporter protein CcmD; Heme exporter protein CcmD 185925 4277578 Sfri_0176 Shewanella frigidimarina NCIMB 400 Heme exporter protein CcmD YP_748877.1 185713 R 318167 CDS YP_748878.1 114561365 4277579 complement(185925..186671) 1 NC_008345.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: son:SO0261 heme exporter protein CcmC; heme exporter protein CcmC 186671 4277579 Sfri_0177 Shewanella frigidimarina NCIMB 400 heme exporter protein CcmC YP_748878.1 185925 R 318167 CDS YP_748879.1 114561366 4277580 complement(186671..187357) 1 NC_008345.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: son:SO0262 heme exporter protein CcmB; heme exporter protein CcmB 187357 4277580 Sfri_0178 Shewanella frigidimarina NCIMB 400 heme exporter protein CcmB YP_748879.1 186671 R 318167 CDS YP_748880.1 114561367 4277581 complement(187367..188017) 1 NC_008345.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 188017 4277581 Sfri_0179 Shewanella frigidimarina NCIMB 400 cytochrome c biogenesis protein CcmA YP_748880.1 187367 R 318167 CDS YP_748881.1 114561368 4277582 188342..188635 1 NC_008345.1 PFAM: cytochrome c, class I; KEGG: son:SO0264 cytochrome c; cytochrome c, class I 188635 4277582 Sfri_0180 Shewanella frigidimarina NCIMB 400 cytochrome c, class I YP_748881.1 188342 D 318167 CDS YP_748882.1 114561369 4277583 complement(188731..189984) 1 NC_008345.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0265 cytochrome c-type biogenesis protein CcmH; hypothetical protein 189984 4277583 Sfri_0181 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748882.1 188731 R 318167 CDS YP_748883.1 114561370 4277584 190402..192372 1 NC_008345.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO0266 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 192372 4277584 Sfri_0182 Shewanella frigidimarina NCIMB 400 cytochrome c-type biogenesis protein CcmF YP_748883.1 190402 D 318167 CDS YP_748884.1 114561371 4277585 192389..192943 1 NC_008345.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: son:SO0267 thiol:disulfide interchange protein DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE 192943 4277585 Sfri_0183 Shewanella frigidimarina NCIMB 400 periplasmic protein thiol--disulfide oxidoreductase DsbE YP_748884.1 192389 D 318167 CDS YP_748885.1 114561372 4277586 192943..193425 1 NC_008345.1 PFAM: cytochrome C biogenesis protein; KEGG: son:SO0268 cytochrome c-type biogenesis protein CcmH; cytochrome C biogenesis protein 193425 4277586 Sfri_0184 Shewanella frigidimarina NCIMB 400 cytochrome C biogenesis protein YP_748885.1 192943 D 318167 CDS YP_748886.1 114561373 4277587 193486..194025 1 NC_008345.1 PFAM: Redoxin domain protein; KEGG: son:SO0269 thioredoxin, putative; redoxin domain-containing protein 194025 4277587 Sfri_0185 Shewanella frigidimarina NCIMB 400 redoxin domain-containing protein YP_748886.1 193486 D 318167 CDS YP_748887.1 114561374 4277588 201080..202354 1 NC_008345.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: son:SO0272 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA 202354 4277588 Sfri_0186 Shewanella frigidimarina NCIMB 400 competence/damage-inducible protein CinA YP_748887.1 201080 D 318167 CDS YP_748888.1 114561375 4277589 complement(202404..205463) 1 NC_008345.1 KEGG: son:SO1096 hypothetical protein; hypothetical protein 205463 4277589 Sfri_0187 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748888.1 202404 R 318167 CDS YP_748889.1 114561376 4277590 complement(205651..206190) 1 NC_008345.1 PFAM: protein of unknown function DUF1439; KEGG: son:SO0273 hypothetical protein; hypothetical protein 206190 4277590 Sfri_0188 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748889.1 205651 R 318167 CDS YP_748890.1 114561377 4277591 complement(206187..208835) 1 NC_008345.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 208835 4277591 Sfri_0189 Shewanella frigidimarina NCIMB 400 phosphoenolpyruvate carboxylase YP_748890.1 206187 R 318167 CDS YP_748891.1 114561378 4277592 complement(208988..210139) 1 NC_008345.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 210139 4277592 Sfri_0190 Shewanella frigidimarina NCIMB 400 acetylornithine deacetylase YP_748891.1 208988 R 318167 CDS YP_748892.1 114561379 4277593 210403..211383 1 NC_008345.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 211383 argC 4277593 argC Shewanella frigidimarina NCIMB 400 N-acetyl-gamma-glutamyl-phosphate reductase YP_748892.1 210403 D 318167 CDS YP_748893.1 114561380 4277594 211414..212193 1 NC_008345.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 212193 4277594 Sfri_0192 Shewanella frigidimarina NCIMB 400 acetylglutamate kinase YP_748893.1 211414 D 318167 CDS YP_748894.1 114561381 4278119 212208..213113 1 NC_008345.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 213113 4278119 Sfri_0193 Shewanella frigidimarina NCIMB 400 ornithine carbamoyltransferase YP_748894.1 212208 D 318167 CDS YP_748895.1 114561382 4278120 213206..214429 1 NC_008345.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 214429 4278120 Sfri_0194 Shewanella frigidimarina NCIMB 400 argininosuccinate synthase YP_748895.1 213206 D 318167 CDS YP_748896.1 114561383 4278121 214516..215946 1 NC_008345.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 215946 4278121 Sfri_0195 Shewanella frigidimarina NCIMB 400 argininosuccinate lyase YP_748896.1 214516 D 318167 CDS YP_748897.1 114561384 4278122 216592..217641 1 NC_008345.1 KEGG: vfi:VF2053 hypothetical protein; hypothetical protein 217641 4278122 Sfri_0196 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748897.1 216592 D 318167 CDS YP_748898.1 114561385 4278123 217648..218703 1 NC_008345.1 KEGG: cps:CPS_0837 hypothetical protein; hypothetical protein 218703 4278123 Sfri_0197 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748898.1 217648 D 318167 CDS YP_748899.1 114561386 4278124 complement(219013..219951) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: hch:HCH_06939 FOG: GGDEF domain; diguanylate cyclase 219951 4278124 Sfri_0198 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_748899.1 219013 R 318167 CDS YP_748900.1 114561387 4278125 complement(220210..222513) 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: gox:GOX0587 membrane-bound aldehyde dehydrogenase, large subunit; twin-arginine translocation pathway signal 222513 4278125 Sfri_0199 Shewanella frigidimarina NCIMB 400 twin-arginine translocation pathway signal YP_748900.1 220210 R 318167 CDS YP_748901.1 114561388 4278126 complement(222497..222976) 1 NC_008345.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: gox:GOX0586 membrane-bound aldehyde dehydrogenase, small subunit; 2Fe-2S iron-sulfur cluster binding domain-containing protein 222976 4278126 Sfri_0200 Shewanella frigidimarina NCIMB 400 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_748901.1 222497 R 318167 CDS YP_748902.1 114561389 4278127 complement(222995..224293) 1 NC_008345.1 PFAM: cytochrome c, class I; KEGG: gox:GOX0585 cytochrome c subunit of aldehyde dehydrogenase; cytochrome c, class I 224293 4278127 Sfri_0201 Shewanella frigidimarina NCIMB 400 cytochrome c, class I YP_748902.1 222995 R 318167 CDS YP_748903.1 114561390 4278128 224961..225278 1 NC_008345.1 hypothetical protein 225278 4278128 Sfri_0202 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748903.1 224961 D 318167 CDS YP_748904.1 114561391 4278129 225281..225538 1 NC_008345.1 hypothetical protein 225538 4278129 Sfri_0203 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748904.1 225281 D 318167 CDS YP_748905.1 114561392 4278130 225563..227164 1 NC_008345.1 PFAM: PepSY-associated TM helix domain protein; KEGG: pfo:Pfl_0927 aspartate kinase; PepSY-associated TM helix domain-containing protein 227164 4278130 Sfri_0204 Shewanella frigidimarina NCIMB 400 PepSY-associated TM helix domain-containing protein YP_748905.1 225563 D 318167 CDS YP_748906.1 114561393 4278131 complement(227239..227934) 1 NC_008345.1 PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: vpa:VPA0042 hypothetical protein; pirin domain-containing protein 227934 4278131 Sfri_0205 Shewanella frigidimarina NCIMB 400 pirin domain-containing protein YP_748906.1 227239 R 318167 CDS YP_748907.1 114561394 4278132 complement(228017..228463) 1 NC_008345.1 PFAM: DoxX family protein; KEGG: vpa:VPA0043 hypothetical protein; DoxX family protein 228463 4278132 Sfri_0206 Shewanella frigidimarina NCIMB 400 DoxX family protein YP_748907.1 228017 R 318167 CDS YP_748908.1 114561395 4278133 228610..229503 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3318 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 229503 4278133 Sfri_0207 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_748908.1 228610 D 318167 CDS YP_748909.1 114561396 4278134 complement(229640..230842) 1 NC_008345.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_5034 major facilitator superfamily MFS_1; major facilitator transporter 230842 4278134 Sfri_0208 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_748909.1 229640 R 318167 CDS YP_748910.1 114561397 4278135 231035..231916 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppr:PBPRB1652 putative transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 231916 4278135 Sfri_0209 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_748910.1 231035 D 318167 CDS YP_748911.1 114561398 4278136 232046..232852 1 NC_008345.1 PFAM: aldo/keto reductase; KEGG: xcb:XC_0279 oxidoreductase; aldo/keto reductase 232852 4278136 Sfri_0210 Shewanella frigidimarina NCIMB 400 aldo/keto reductase YP_748911.1 232046 D 318167 CDS YP_748912.1 114561399 4277945 233105..233551 1 NC_008345.1 PFAM: regulatory protein, MerR; KEGG: sde:Sde_1934 putative transcriptional regulator, MerR family; transcriptional regulator, MerR family protein 233551 4277945 Sfri_0211 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MerR family protein YP_748912.1 233105 D 318167 CDS YP_748913.1 114561400 4277946 233551..235791 1 NC_008345.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: ilo:IL1218 cation transport ATPase; copper-translocating P-type ATPase 235791 4277946 Sfri_0212 Shewanella frigidimarina NCIMB 400 copper-translocating P-type ATPase YP_748913.1 233551 D 318167 CDS YP_748914.1 114561401 4277947 235801..236151 1 NC_008345.1 KEGG: ilo:IL1217 likely secreted protein containing plastocyanin domain; plastocyanin domain-containing protein 236151 4277947 Sfri_0213 Shewanella frigidimarina NCIMB 400 plastocyanin domain-containing protein YP_748914.1 235801 D 318167 CDS YP_748915.1 114561402 4277948 236331..236843 1 NC_008345.1 KEGG: ilo:IL1543 hypothetical protein; hypothetical protein 236843 4277948 Sfri_0214 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748915.1 236331 D 318167 CDS YP_748916.1 114561403 4277949 236893..237366 1 NC_008345.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO4640 antioxidant, AhpC/Tsa family; redoxin domain-containing protein 237366 4277949 Sfri_0215 Shewanella frigidimarina NCIMB 400 redoxin domain-containing protein YP_748916.1 236893 D 318167 CDS YP_748917.1 114561404 4277950 complement(237477..239423) 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4635 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 239423 4277950 Sfri_0216 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_748917.1 237477 R 318167 CDS YP_748918.1 114561405 4277951 complement(239540..240880) 1 NC_008345.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 240880 envZ 4277951 envZ Shewanella frigidimarina NCIMB 400 osmolarity sensor protein YP_748918.1 239540 R 318167 CDS YP_748919.1 114561406 4277952 complement(240884..241609) 1 NC_008345.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 241609 ompR 4277952 ompR Shewanella frigidimarina NCIMB 400 osmolarity response regulator YP_748919.1 240884 R 318167 CDS YP_748920.1 114561407 4277953 complement(241727..242524) 1 NC_008345.1 hypothetical protein 242524 4277953 Sfri_0219 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748920.1 241727 R 318167 CDS YP_748921.1 114561408 4277954 complement(242736..243647) 1 NC_008345.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 243647 4277954 Sfri_0220 Shewanella frigidimarina NCIMB 400 protoheme IX farnesyltransferase YP_748921.1 242736 R 318167 CDS YP_748922.1 114561409 4277955 complement(243681..244010) 1 NC_008345.1 PFAM: cytochrome C oxidase subunit IV; KEGG: cvi:CV3993 cytochrome o ubiquinol oxidase subunit IV; cytochrome C oxidase subunit IV 244010 4277955 Sfri_0221 Shewanella frigidimarina NCIMB 400 cytochrome C oxidase subunit IV YP_748922.1 243681 R 318167 CDS YP_748923.1 114561410 4277956 complement(244010..244645) 1 NC_008345.1 PFAM: cytochrome c oxidase, subunit III; KEGG: pha:PSHAa2229 cytochrome o ubiquinol oxidase subunit III (ubiquinol oxidase chain C); cytochrome c oxidase subunit III 244645 4277956 Sfri_0222 Shewanella frigidimarina NCIMB 400 cytochrome c oxidase subunit III YP_748923.1 244010 R 318167 CDS YP_748924.1 114561411 4277957 complement(244645..246627) 1 NC_008345.1 PFAM: cytochrome c oxidase, subunit I; KEGG: pha:PSHAa2230 ubiquinol oxidase polypeptide I (cytochrome o subunit 1) (oxidase BO(3) subunit 1) (cytochrome o ubiquinol oxidase subunit 1) (ubiquinol oxidase chain A); cytochrome-c oxidase 246627 4277957 Sfri_0223 Shewanella frigidimarina NCIMB 400 cytochrome-c oxidase YP_748924.1 244645 R 318167 CDS YP_748925.1 114561412 4277958 complement(246630..247670) 1 NC_008345.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; KEGG: pha:PSHAa2231 ubiquinol oxidase polypeptide II (cytochrome o subunit 2) (oxidase BO(3) subunit 2) (cytochrome o ubiquinol oxidase subunit 2) (ubiquinol oxidase chain B); ubiquinol oxidase, subunit II 247670 4277958 Sfri_0224 Shewanella frigidimarina NCIMB 400 ubiquinol oxidase, subunit II YP_748925.1 246630 R 318167 CDS YP_748926.1 114561413 4277959 complement(247848..248303) 1 NC_008345.1 hypothetical protein 248303 4277959 Sfri_0225 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748926.1 247848 R 318167 CDS YP_748927.1 114561414 4277960 248689..249216 1 NC_008345.1 PFAM: regulatory protein, TetR; KEGG: ppr:PBPRB1080 hypothetical protein; transcriptional regulator, TetR family protein 249216 4277960 Sfri_0226 Shewanella frigidimarina NCIMB 400 transcriptional regulator, TetR family protein YP_748927.1 248689 D 318167 CDS YP_748928.1 114561415 4277961 249219..250268 1 NC_008345.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ppr:PBPRB1079 hypothetical oxidoreductase protein; alcohol dehydrogenase 250268 4277961 Sfri_0227 Shewanella frigidimarina NCIMB 400 alcohol dehydrogenase YP_748928.1 249219 D 318167 CDS YP_748929.1 114561416 4278661 250509..251321 1 NC_008345.1 PFAM: regulatory protein RecX; KEGG: vfi:VFA0909 putative regulatory protein RecX; regulatory protein RecX 251321 4278661 Sfri_0228 Shewanella frigidimarina NCIMB 400 regulatory protein RecX YP_748929.1 250509 D 318167 CDS YP_748930.1 114561417 4278662 complement(251511..252884) 1 NC_008345.1 PFAM: fumarate lyase; KEGG: vch:VC1573 fumarate hydratase, class II; fumarate lyase 252884 4278662 Sfri_0229 Shewanella frigidimarina NCIMB 400 fumarate lyase YP_748930.1 251511 R 318167 CDS YP_748931.1 114561418 4278663 252977..255703 1 NC_008345.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: hch:HCH_06874 aconitate hydratase 1; aconitate hydratase 1 255703 4278663 Sfri_0230 Shewanella frigidimarina NCIMB 400 aconitate hydratase 1 YP_748931.1 252977 D 318167 CDS YP_748932.1 114561419 4278664 256270..256950 1 NC_008345.1 KEGG: tbd:Tbd_2287 putative integral membrane protein; putative integral membrane protein 256950 4278664 Sfri_0231 Shewanella frigidimarina NCIMB 400 putative integral membrane protein YP_748932.1 256270 D 318167 CDS YP_748933.1 114561420 4278665 complement(257187..257966) 1 NC_008345.1 TIGRFAM: acetoin reductases; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL0792 acetoin(diacetyl) reductase; acetoin reductase 257966 4278665 Sfri_0232 Shewanella frigidimarina NCIMB 400 acetoin reductase YP_748933.1 257187 R 318167 CDS YP_748934.1 114561421 4278666 complement(258460..259071) 1 NC_008345.1 KEGG: bce:BC2320 hypothetical protein; hypothetical protein 259071 4278666 Sfri_0233 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748934.1 258460 R 318167 CDS YP_748935.1 114561422 4278667 complement(259285..259770) 1 NC_008345.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: vpa:VP0152 transcription elongation factor GreB; transcription elongation factor GreB 259770 4278667 Sfri_0234 Shewanella frigidimarina NCIMB 400 transcription elongation factor GreB YP_748935.1 259285 R 318167 CDS YP_748936.1 114561423 4278668 259984..262356 1 NC_008345.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: son:SO4629 hypothetical protein; RNA-binding S1 domain-containing protein 262356 4278668 Sfri_0235 Shewanella frigidimarina NCIMB 400 RNA-binding S1 domain-containing protein YP_748936.1 259984 D 318167 CDS YP_748937.1 114561424 4278669 262621..264228 1 NC_008345.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: vfi:VFA0210 integral membrane protein; sulfatase 264228 4278669 Sfri_0236 Shewanella frigidimarina NCIMB 400 sulfatase YP_748937.1 262621 D 318167 CDS YP_748938.1 114561425 4278670 264239..264682 1 NC_008345.1 PFAM: diacylglycerol kinase; KEGG: pha:PSHAa2773 diacylglycerol kinase (DAGK); diacylglycerol kinase 264682 4278670 Sfri_0237 Shewanella frigidimarina NCIMB 400 diacylglycerol kinase YP_748938.1 264239 D 318167 CDS YP_748939.1 114561426 4278671 264859..265533 1 NC_008345.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: vfi:VFA0211 transcriptional regulator; two component transcriptional regulator, winged helix family protein 265533 4278671 Sfri_0238 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, winged helix family protein YP_748939.1 264859 D 318167 CDS YP_748940.1 114561427 4278672 265533..266969 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pha:PSHAa2776 sensor transduction kinase (copper resistance); sensor signal transduction histidine kinase 266969 4278672 Sfri_0239 Shewanella frigidimarina NCIMB 400 sensor signal transduction histidine kinase YP_748940.1 265533 D 318167 CDS YP_748941.1 114561428 4278673 267322..269358 1 NC_008345.1 PFAM: sulfatase; KEGG: son:SO4628 sulfatase; sulfatase 269358 4278673 Sfri_0240 Shewanella frigidimarina NCIMB 400 sulfatase YP_748941.1 267322 D 318167 CDS YP_748942.1 114561429 4278674 complement(269350..269856) 1 NC_008345.1 KEGG: son:SO4627 hypothetical protein; hypothetical protein 269856 4278674 Sfri_0241 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748942.1 269350 R 318167 CDS YP_748943.1 114561430 4278675 complement(269934..270740) 1 NC_008345.1 TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: son:SO4626 bioH protein; bioH protein 270740 4278675 Sfri_0242 Shewanella frigidimarina NCIMB 400 bioH protein YP_748943.1 269934 R 318167 CDS YP_748944.1 114561431 4278676 270784..271590 1 NC_008345.1 KEGG: son:SO4625 competence protein ComF; competence protein ComF 271590 4278676 Sfri_0243 Shewanella frigidimarina NCIMB 400 competence protein ComF YP_748944.1 270784 D 318167 CDS YP_748945.1 114561432 4278677 271862..272440 1 NC_008345.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 272440 4278677 Sfri_0244 Shewanella frigidimarina NCIMB 400 putative DNA uptake protein YP_748945.1 271862 D 318167 CDS YP_748946.1 114561433 4278678 complement(272549..272878) 1 NC_008345.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: cvi:CV0705 probable FkbP-type peptidyl-prolyl cis-trans isomerase; peptidylprolyl isomerase, FKBP-type 272878 4278678 Sfri_0245 Shewanella frigidimarina NCIMB 400 peptidylprolyl isomerase, FKBP-type YP_748946.1 272549 R 318167 CDS YP_748947.1 114561434 4277017 complement(272915..274849) 1 NC_008345.1 PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; phospholipase/Carboxylesterase; KEGG: son:SO4618 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase 274849 4277017 Sfri_0246 Shewanella frigidimarina NCIMB 400 peptidase S9 prolyl oligopeptidase YP_748947.1 272915 R 318167 CDS YP_748948.1 114561435 4277018 complement(274921..276264) 1 NC_008345.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO4617 DNA-damage-inducible protein F; MATE efflux family protein 276264 4277018 Sfri_0247 Shewanella frigidimarina NCIMB 400 MATE efflux family protein YP_748948.1 274921 R 318167 CDS YP_748949.1 114561436 4277019 276279..277337 1 NC_008345.1 PFAM: polysaccharide deacetylase; KEGG: son:SO4616 polysaccharide deacetylase family protein; polysaccharide deacetylase 277337 4277019 Sfri_0248 Shewanella frigidimarina NCIMB 400 polysaccharide deacetylase YP_748949.1 276279 D 318167 CDS YP_748950.1 114561437 4277020 complement(277356..277970) 1 NC_008345.1 PFAM: electron transport protein SCO1/SenC; KEGG: son:SO4615 SCO1/SenC family protein; electron transport protein SCO1/SenC 277970 4277020 Sfri_0249 Shewanella frigidimarina NCIMB 400 electron transport protein SCO1/SenC YP_748950.1 277356 R 318167 CDS YP_748951.1 114561438 4277021 complement(277998..278909) 1 NC_008345.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 278909 4277021 Sfri_0250 Shewanella frigidimarina NCIMB 400 protoheme IX farnesyltransferase YP_748951.1 277998 R 318167 CDS YP_748952.1 114561439 4277022 complement(278923..279903) 1 NC_008345.1 PFAM: cytochrome oxidase assembly; KEGG: son:SO4613 cytochrome oxidase assembly protein, putative; cytochrome oxidase assembly 279903 4277022 Sfri_0251 Shewanella frigidimarina NCIMB 400 cytochrome oxidase assembly YP_748952.1 278923 R 318167 CDS YP_748953.1 114561440 4277023 complement(279903..280454) 1 NC_008345.1 KEGG: son:SO4612 hypothetical protein; hypothetical protein 280454 4277023 Sfri_0252 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748953.1 279903 R 318167 CDS YP_748954.1 114561441 4277024 complement(280512..281339) 1 NC_008345.1 KEGG: son:SO4611 hypothetical protein; hypothetical protein 281339 4277024 Sfri_0253 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748954.1 280512 R 318167 CDS YP_748955.1 114561442 4277025 281326..281505 1 NC_008345.1 KEGG: son:SO4610 hypothetical protein; hypothetical protein 281505 4277025 Sfri_0254 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748955.1 281326 D 318167 CDS YP_748956.1 114561443 4277026 complement(281522..282397) 1 NC_008345.1 PFAM: cytochrome c oxidase, subunit III; KEGG: son:SO4609 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 282397 4277026 Sfri_0255 Shewanella frigidimarina NCIMB 400 cytochrome c oxidase subunit III YP_748956.1 281522 R 318167 CDS YP_748957.1 114561444 4277027 complement(282394..282957) 1 NC_008345.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 282957 4277027 Sfri_0256 Shewanella frigidimarina NCIMB 400 cytochrome C oxidase assembly protein YP_748957.1 282394 R 318167 CDS YP_748958.1 114561445 4277028 complement(282959..284554) 1 NC_008345.1 PFAM: cytochrome c oxidase, subunit I; KEGG: son:SO4607 cytochrome c oxidase, subunit I; cytochrome-c oxidase 284554 4277028 Sfri_0257 Shewanella frigidimarina NCIMB 400 cytochrome-c oxidase YP_748958.1 282959 R 318167 CDS YP_748959.1 114561446 4277029 complement(284564..286150) 1 NC_008345.1 PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: son:SO4606 cytochrome c oxidase, subunit II; cytochrome c oxidase, subunit II 286150 4277029 Sfri_0258 Shewanella frigidimarina NCIMB 400 cytochrome c oxidase, subunit II YP_748959.1 284564 R 318167 CDS YP_748960.1 114561447 4277030 complement(286546..287052) 1 NC_008345.1 KEGG: son:SO4604 hypothetical protein; hypothetical protein 287052 4277030 Sfri_0259 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748960.1 286546 R 318167 CDS YP_748961.1 114561448 4277031 complement(287049..287663) 1 NC_008345.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 287663 4277031 Sfri_0260 Shewanella frigidimarina NCIMB 400 LexA repressor YP_748961.1 287049 R 318167 CDS YP_748962.1 114561449 4277032 287928..290351 1 NC_008345.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 290351 4277032 Sfri_0261 Shewanella frigidimarina NCIMB 400 glycerol-3-phosphate acyltransferase YP_748962.1 287928 D 318167 CDS YP_748963.1 114561450 4277033 290351..291607 1 NC_008345.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: son:SO4601 tryptophan-specific transport protein; aromatic amino acid transporter 291607 4277033 Sfri_0262 Shewanella frigidimarina NCIMB 400 aromatic amino acid transporter YP_748963.1 290351 D 318167 CDS YP_748964.1 114561451 4278066 291753..292529 1 NC_008345.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO4600 antigen, putative; glyoxalase/bleomycin resistance protein/dioxygenase 292529 4278066 Sfri_0263 Shewanella frigidimarina NCIMB 400 glyoxalase/bleomycin resistance protein/dioxygenase YP_748964.1 291753 D 318167 CDS YP_748965.1 114561452 4278067 292779..293042 1 NC_008345.1 hypothetical protein 293042 4278067 Sfri_0264 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748965.1 292779 D 318167 CDS YP_748966.1 114561453 4278068 293039..293305 1 NC_008345.1 hypothetical protein 293305 4278068 Sfri_0265 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748966.1 293039 D 318167 CDS YP_748967.1 114561454 4278069 complement(293402..296545) 1 NC_008345.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SOA0153 heavy metal efflux pump, CzcA family; heavy metal efflux pump, CzcA family protein 296545 4278069 Sfri_0266 Shewanella frigidimarina NCIMB 400 heavy metal efflux pump, CzcA family protein YP_748967.1 293402 R 318167 CDS YP_748968.1 114561455 4278070 complement(296557..298065) 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SOA0154 heavy metal efflux protein, putative; RND family efflux transporter MFP subunit 298065 4278070 Sfri_0267 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_748968.1 296557 R 318167 CDS YP_748969.1 114561456 4278071 complement(298161..298478) 1 NC_008345.1 KEGG: son:SO4597 heavy metal efflux system protein, putative; hypothetical protein 298478 4278071 Sfri_0268 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748969.1 298161 R 318167 CDS YP_748970.1 114561457 4278072 complement(298584..299030) 1 NC_008345.1 KEGG: son:SOA0156 hypothetical protein; hypothetical protein 299030 4278072 Sfri_0269 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748970.1 298584 R 318167 CDS YP_748971.1 114561458 4278073 complement(299214..299939) 1 NC_008345.1 KEGG: cps:CPS_0735 hypothetical protein; hypothetical protein 299939 4278073 Sfri_0270 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748971.1 299214 R 318167 CDS YP_748972.1 114561459 4278074 complement(299939..300697) 1 NC_008345.1 KEGG: cps:CPS_0734 hypothetical protein; hypothetical protein 300697 4278074 Sfri_0271 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748972.1 299939 R 318167 CDS YP_748973.1 114561460 4278075 301407..301970 1 NC_008345.1 PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO4591 tetraheme cytochrome c; NapC/NirT cytochrome c domain-containing protein 301970 4278075 Sfri_0272 Shewanella frigidimarina NCIMB 400 NapC/NirT cytochrome c domain-containing protein YP_748973.1 301407 D 318167 CDS YP_748974.1 114561461 4278076 complement(302050..302352) 1 NC_008345.1 hypothetical protein 302352 4278076 Sfri_0273 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748974.1 302050 R 318167 CDS YP_748975.1 114561462 4278077 complement(302357..302956) 1 NC_008345.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: son:SO4587 putative methylase; putative methyltransferase 302956 4278077 Sfri_0274 Shewanella frigidimarina NCIMB 400 putative methyltransferase YP_748975.1 302357 R 318167 CDS YP_748976.1 114561463 4278078 303137..304900 1 NC_008345.1 KEGG: son:SO4586 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 304900 4278078 Sfri_0275 Shewanella frigidimarina NCIMB 400 signal recognition particle-docking protein FtsY YP_748976.1 303137 D 318167 CDS YP_748977.1 114561464 4278079 304904..305593 1 NC_008345.1 KEGG: son:SO4585 cell division ABC transporter, ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 305593 4278079 Sfri_0276 Shewanella frigidimarina NCIMB 400 cell division ATP-binding protein FtsE YP_748977.1 304904 D 318167 CDS YP_748978.1 114561465 4278080 305590..306555 1 NC_008345.1 PFAM: protein of unknown function DUF214; KEGG: son:SO4584 cell division ABC transporter, permease protein FtsX; hypothetical protein 306555 4278080 Sfri_0277 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748978.1 305590 D 318167 CDS YP_748979.1 114561466 4278081 306788..307645 1 NC_008345.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 307645 4278081 Sfri_0278 Shewanella frigidimarina NCIMB 400 RNA polymerase factor sigma-32 YP_748979.1 306788 D 318167 CDS YP_748980.1 114561467 4278082 complement(307891..309438) 1 NC_008345.1 TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO4576 O-succinylbenzoic acid--CoA ligase; o-succinylbenzoate--CoA ligase 309438 4278082 Sfri_0279 Shewanella frigidimarina NCIMB 400 o-succinylbenzoate--CoA ligase YP_748980.1 307891 R 318167 CDS YP_748981.1 114561468 4278083 complement(309438..310532) 1 NC_008345.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 310532 4278083 Sfri_0280 Shewanella frigidimarina NCIMB 400 O-succinylbenzoate synthase YP_748981.1 309438 R 318167 CDS YP_748982.1 114561469 4278556 complement(310535..311347) 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO4574 hydrolase, alpha/beta fold family; alpha/beta hydrolase 311347 4278556 Sfri_0281 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase YP_748982.1 310535 R 318167 CDS YP_748983.1 114561470 4278557 complement(311347..313086) 1 NC_008345.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 313086 4278557 Sfri_0282 Shewanella frigidimarina NCIMB 400 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_748983.1 311347 R 318167 CDS YP_748984.1 114561471 4278558 313307..314140 1 NC_008345.1 KEGG: son:SO4563 hypothetical protein; putative signal transduction protein 314140 4278558 Sfri_0283 Shewanella frigidimarina NCIMB 400 putative signal transduction protein YP_748984.1 313307 D 318167 CDS YP_748985.1 114561472 4278559 complement(314189..314662) 1 NC_008345.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: son:SO4567 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 314662 4278559 Sfri_0284 Shewanella frigidimarina NCIMB 400 AsnC family transcriptional regulator YP_748985.1 314189 R 318167 CDS YP_748986.1 114561473 4278560 314791..316074 1 NC_008345.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH 316074 4278560 Sfri_0285 Shewanella frigidimarina NCIMB 400 inner membrane protein YjeH YP_748986.1 314791 D 318167 CDS YP_748987.1 114561474 4278561 complement(316086..316535) 1 NC_008345.1 PFAM: protein of unknown function DUF1332; KEGG: son:SO4562 hypothetical protein; hypothetical protein 316535 4278561 Sfri_0286 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748987.1 316086 R 318167 CDS YP_748988.1 114561475 4278562 complement(316665..317228) 1 NC_008345.1 KEGG: son:SO4561 hypothetical protein; hypothetical protein 317228 4278562 Sfri_0287 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748988.1 316665 R 318167 CDS YP_748989.1 114561476 4278563 317399..318121 1 NC_008345.1 KEGG: son:SO4560 hypothetical protein; hypothetical protein 318121 4278563 Sfri_0288 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748989.1 317399 D 318167 CDS YP_748990.1 114561477 4278564 318154..319662 1 NC_008345.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4559 hypothetical protein; Sel1 domain-containing protein 319662 4278564 Sfri_0289 Shewanella frigidimarina NCIMB 400 Sel1 domain-containing protein YP_748990.1 318154 D 318167 CDS YP_748991.1 114561478 4278565 319895..321751 1 NC_008345.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cps:CPS_3372 putative transporter; TrkA domain-containing protein 321751 4278565 Sfri_0290 Shewanella frigidimarina NCIMB 400 TrkA domain-containing protein YP_748991.1 319895 D 318167 CDS YP_748992.1 114561479 4278566 322133..322510 1 NC_008345.1 hypothetical protein 322510 4278566 Sfri_0291 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748992.1 322133 D 318167 CDS YP_748993.1 114561480 4278567 322507..322740 1 NC_008345.1 hypothetical protein 322740 4278567 Sfri_0292 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748993.1 322507 D 318167 CDS YP_748994.1 114561481 4278568 complement(323577..324215) 1 NC_008345.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; Male sterility C-terminal; KEGG: pha:PSHAa2082 hypothetical protein; NAD-dependent epimerase/dehydratase 324215 4278568 Sfri_0293 Shewanella frigidimarina NCIMB 400 NAD-dependent epimerase/dehydratase YP_748994.1 323577 R 318167 CDS YP_748995.1 114561482 4278569 complement(324562..324900) 1 NC_008345.1 hypothetical protein 324900 4278569 Sfri_0294 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748995.1 324562 R 318167 CDS YP_748996.1 114561483 4278570 complement(325302..325619) 1 NC_008345.1 hypothetical protein 325619 4278570 Sfri_0295 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748996.1 325302 R 318167 CDS YP_748997.1 114561484 4278571 complement(325730..326713) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4556 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 326713 4278571 Sfri_0296 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_748997.1 325730 R 318167 CDS YP_748998.1 114561485 4278572 326840..328045 1 NC_008345.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4555 drug resistance transporter, Bcr/CflA family protein; Bcr/CflA subfamily drug resistance transporter 328045 4278572 Sfri_0297 Shewanella frigidimarina NCIMB 400 Bcr/CflA subfamily drug resistance transporter YP_748998.1 326840 D 318167 CDS YP_748999.1 114561486 4277193 complement(328127..329092) 1 NC_008345.1 hypothetical protein 329092 4277193 Sfri_0298 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_748999.1 328127 R 318167 CDS YP_749000.1 114561487 4277194 329194..329805 1 NC_008345.1 PFAM: DTW domain containing protein; KEGG: son:SO4554 hypothetical protein; DTW domain-containing protein 329805 4277194 Sfri_0299 Shewanella frigidimarina NCIMB 400 DTW domain-containing protein YP_749000.1 329194 D 318167 CDS YP_749001.1 114561488 4277195 329811..330194 1 NC_008345.1 KEGG: son:SO4551 hypothetical protein; hypothetical protein 330194 4277195 Sfri_0300 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749001.1 329811 D 318167 CDS YP_749002.1 114561489 4277196 330238..330882 1 NC_008345.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4550 methyltransferase domain protein; methyltransferase type 11 330882 4277196 Sfri_0301 Shewanella frigidimarina NCIMB 400 methyltransferase type 11 YP_749002.1 330238 D 318167 CDS YP_749003.1 114561490 4277197 331001..332314 1 NC_008345.1 KEGG: ilo:IL0586 metal-dependent hydrolase of the aminoacylase-2/carboxypeptidase-Z family; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 332314 4277197 Sfri_0302 Shewanella frigidimarina NCIMB 400 amidohydrolase YP_749003.1 331001 D 318167 CDS YP_749004.1 114561491 4277198 332400..333728 1 NC_008345.1 PFAM: peptidase M16 domain protein; KEGG: son:SO4537.2 hypothetical Zn-dependent peptidase; peptidase M16 domain-containing protein 333728 4277198 Sfri_0303 Shewanella frigidimarina NCIMB 400 peptidase M16 domain-containing protein YP_749004.1 332400 D 318167 CDS YP_749005.1 114561492 4277199 333725..335176 1 NC_008345.1 PFAM: peptidase M16 domain protein; KEGG: ppr:PBPRB1337 hypothetical protein; peptidase M16 domain-containing protein 335176 4277199 Sfri_0304 Shewanella frigidimarina NCIMB 400 peptidase M16 domain-containing protein YP_749005.1 333725 D 318167 CDS YP_749006.1 114561493 4277200 335401..335964 1 NC_008345.1 KEGG: son:SO4535 hypothetical protein; hypothetical protein 335964 4277200 Sfri_0305 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749006.1 335401 D 318167 CDS YP_749007.1 114561494 4277201 complement(335993..336331) 1 NC_008345.1 KEGG: son:SO3676 hypothetical protein; hypothetical protein 336331 4277201 Sfri_0306 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749007.1 335993 R 318167 CDS YP_749008.1 114561495 4277202 complement(336331..336795) 1 NC_008345.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO4529 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase 336795 4277202 Sfri_0307 Shewanella frigidimarina NCIMB 400 RNA methyltransferase YP_749008.1 336331 R 318167 CDS YP_749009.1 114561496 4277203 complement(337046..338425) 1 NC_008345.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa2520 mechanosensitive channel protein; MscS mechanosensitive ion channel 338425 4277203 Sfri_0308 Shewanella frigidimarina NCIMB 400 MscS mechanosensitive ion channel YP_749009.1 337046 R 318167 CDS YP_749010.1 114561497 4277204 338743..338901 1 NC_008345.1 PFAM: protein of unknown function UPF0057; KEGG: rru:Rru_A2519 hypothetical protein; hypothetical protein 338901 4277204 Sfri_0309 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749010.1 338743 D 318167 CDS YP_749011.1 114561498 4277205 complement(339162..340562) 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4478 sensor protein CpxA; periplasmic sensor signal transduction histidine kinase 340562 4277205 Sfri_0310 Shewanella frigidimarina NCIMB 400 periplasmic sensor signal transduction histidine kinase YP_749011.1 339162 R 318167 CDS YP_749012.1 114561499 4277206 complement(340562..341248) 1 NC_008345.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4477 transcriptional regulatory protein CpxR; two component transcriptional regulator, winged helix family protein 341248 4277206 Sfri_0311 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, winged helix family protein YP_749012.1 340562 R 318167 CDS YP_749013.1 114561500 4277207 complement(341365..342804) 1 NC_008345.1 KEGG: son:SO0975 hypothetical protein; hypothetical protein 342804 4277207 Sfri_0312 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749013.1 341365 R 318167 CDS YP_749014.1 114561501 4277208 343068..343559 1 NC_008345.1 KEGG: son:SO4476 spheroplast protein y precursor, putative; spheroplast protein y precursor, putative 343559 4277208 Sfri_0313 Shewanella frigidimarina NCIMB 400 spheroplast protein y precursor, putative YP_749014.1 343068 D 318167 CDS YP_749015.1 114561502 4277209 343760..344629 1 NC_008345.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: son:SO4475 cation efflux family protein; cation diffusion facilitator family transporter 344629 4277209 Sfri_0314 Shewanella frigidimarina NCIMB 400 cation diffusion facilitator family transporter YP_749015.1 343760 D 318167 CDS YP_749016.1 114561503 4277210 complement(344741..345499) 1 NC_008345.1 PFAM: catalytic domain of components of various dehydrogenase complexes; KEGG: xft:PD1809 dihydrolipoamide acetyltranferase; dihydrolipoyllysine-residue succinyltransferase 345499 4277210 Sfri_0315 Shewanella frigidimarina NCIMB 400 dihydrolipoyllysine-residue succinyltransferase YP_749016.1 344741 R 318167 CDS YP_749017.1 114561504 4277403 complement(345514..345816) 1 NC_008345.1 KEGG: pca:Pcar_0332 hypothetical protein; hypothetical protein 345816 4277403 Sfri_0316 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749017.1 345514 R 318167 CDS YP_749018.1 114561505 4277404 complement(345829..346128) 1 NC_008345.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: reu:Reut_B5552 alpha/beta hydrolase fold:biotin/lipoyl attachment; biotin/lipoyl attachment domain-containing protein 346128 4277404 Sfri_0317 Shewanella frigidimarina NCIMB 400 biotin/lipoyl attachment domain-containing protein YP_749018.1 345829 R 318167 CDS YP_749019.1 114561506 4277405 complement(346128..347138) 1 NC_008345.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: reu:Reut_B5551 transketolase, central region:transketolase, C-terminal; transketolase, central region 347138 4277405 Sfri_0318 Shewanella frigidimarina NCIMB 400 transketolase, central region YP_749019.1 346128 R 318167 CDS YP_749020.1 114561507 4277406 complement(347152..348126) 1 NC_008345.1 PFAM: dehydrogenase, E1 component; KEGG: bur:Bcep18194_A5140 pyruvate dehydrogenase (lipoamide); dehydrogenase, E1 component 348126 4277406 Sfri_0319 Shewanella frigidimarina NCIMB 400 dehydrogenase, E1 component YP_749020.1 347152 R 318167 CDS YP_749021.1 114561508 4277407 complement(349239..350651) 1 NC_008345.1 KEGG: son:SO4472 nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator, NtrC, Fis family 350651 4277407 Sfri_0320 Shewanella frigidimarina NCIMB 400 nitrogen metabolism transcriptional regulator, NtrC, Fis family YP_749021.1 349239 R 318167 CDS YP_749022.1 114561509 4277408 complement(350688..351725) 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4471 nitrogen regulation protein; signal transduction histidine kinase, nitrogen specific, NtrB 351725 4277408 Sfri_0321 Shewanella frigidimarina NCIMB 400 signal transduction histidine kinase, nitrogen specific, NtrB YP_749022.1 350688 R 318167 CDS YP_749023.1 114561510 4277409 complement(351865..352389) 1 NC_008345.1 KEGG: son:SO4470 hypothetical protein; hypothetical protein 352389 4277409 Sfri_0322 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749023.1 351865 R 318167 CDS YP_749024.1 114561511 4277410 complement(352521..352832) 1 NC_008345.1 PFAM: protein of unknown function DUF1255; KEGG: son:SO4467 hypothetical protein; hypothetical protein 352832 4277410 Sfri_0323 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749024.1 352521 R 318167 CDS YP_749025.1 114561512 4277411 complement(353180..354991) 1 NC_008345.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: son:SO4408 virulence regulator BipA; GTP-binding protein TypA 354991 4277411 Sfri_0324 Shewanella frigidimarina NCIMB 400 GTP-binding protein TypA YP_749025.1 353180 R 318167 CDS YP_749026.1 114561513 4277412 355472..356881 1 NC_008345.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 356881 glnA 4277412 glnA Shewanella frigidimarina NCIMB 400 glutamine synthetase YP_749026.1 355472 D 318167 CDS YP_749027.1 114561514 4277413 357125..357325 1 NC_008345.1 KEGG: rfr:Rfer_2487 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 357325 4277413 Sfri_0326 Shewanella frigidimarina NCIMB 400 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_749027.1 357125 D 318167 CDS YP_749028.1 114561515 4277414 357379..357918 1 NC_008345.1 PFAM: methylation site containing protein; KEGG: hch:HCH_06146 type II secretory pathway, pseudopilin PulG; methylation site containing protein 357918 4277414 Sfri_0327 Shewanella frigidimarina NCIMB 400 methylation site containing protein YP_749028.1 357379 D 318167 CDS YP_749029.1 114561516 4277415 358111..358581 1 NC_008345.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: pha:PSHAa0053 transcriptional regulator; AsnC family transcriptional regulator 358581 4277415 Sfri_0328 Shewanella frigidimarina NCIMB 400 AsnC family transcriptional regulator YP_749029.1 358111 D 318167 CDS YP_749030.1 114561517 4277416 complement(358697..359344) 1 NC_008345.1 KEGG: son:SO4403 hypothetical protein; hypothetical protein 359344 4277416 Sfri_0329 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749030.1 358697 R 318167 CDS YP_749031.1 114561518 4277417 complement(359407..359631) 1 NC_008345.1 KEGG: son:SO4402 hypothetical protein; hypothetical protein 359631 4277417 Sfri_0330 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749031.1 359407 R 318167 CDS YP_749032.1 114561519 4277418 359737..360699 1 NC_008345.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 360699 rbn 4277418 rbn Shewanella frigidimarina NCIMB 400 ribonuclease BN YP_749032.1 359737 D 318167 CDS YP_749033.1 114561520 4277419 360849..361286 1 NC_008345.1 PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: son:SO4398 D-Tyr-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase 361286 4277419 Sfri_0332 Shewanella frigidimarina NCIMB 400 D-tyrosyl-tRNA(Tyr) deacylase YP_749033.1 360849 D 318167 CDS YP_749034.1 114561521 4277141 361356..361850 1 NC_008345.1 TIGRFAM: thioesterase domain, putative; KEGG: son:SO4397 hypothetical acetyltransferase; thioesterase domain-containing protein 361850 4277141 Sfri_0333 Shewanella frigidimarina NCIMB 400 thioesterase domain-containing protein YP_749034.1 361356 D 318167 CDS YP_749035.1 114561522 4277142 362004..362597 1 NC_008345.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 362597 4277142 Sfri_0334 Shewanella frigidimarina NCIMB 400 azoreductase YP_749035.1 362004 D 318167 CDS YP_749036.1 114561523 4277143 362853..363464 1 NC_008345.1 PFAM: electron transport protein SCO1/SenC; KEGG: sde:Sde_0045 GGDEF; electron transport protein SCO1/SenC 363464 4277143 Sfri_0335 Shewanella frigidimarina NCIMB 400 electron transport protein SCO1/SenC YP_749036.1 362853 D 318167 CDS YP_749037.1 114561524 4277144 363475..364977 1 NC_008345.1 PFAM: chemotaxis sensory transducer; KEGG: pha:PSHAb0277 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 364977 4277144 Sfri_0336 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_749037.1 363475 D 318167 CDS YP_749038.1 114561525 4277145 complement(365049..366275) 1 NC_008345.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 366275 4277145 Sfri_0337 Shewanella frigidimarina NCIMB 400 3-oxoacyl-(acyl carrier protein) synthase II YP_749038.1 365049 R 318167 CDS YP_749039.1 114561526 4277146 complement(366272..366997) 1 NC_008345.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 366997 fabG 4277146 fabG Shewanella frigidimarina NCIMB 400 3-ketoacyl-ACP reductase YP_749039.1 366272 R 318167 CDS YP_749040.1 114561527 4277147 complement(367061..367552) 1 NC_008345.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: son:SO4381 thioester dehydrase family protein; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ 367552 4277147 Sfri_0339 Shewanella frigidimarina NCIMB 400 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_749040.1 367061 R 318167 CDS YP_749041.1 114561528 4277148 complement(367557..368759) 1 NC_008345.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 368759 4277148 Sfri_0340 Shewanella frigidimarina NCIMB 400 3-oxoacyl-ACP synthase YP_749041.1 367557 R 318167 CDS YP_749042.1 114561529 4277149 complement(368838..369458) 1 NC_008345.1 KEGG: son:SO4379 hypothetical protein; hypothetical protein 369458 4277149 Sfri_0341 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749042.1 368838 R 318167 CDS YP_749043.1 114561530 4277150 complement(369448..370716) 1 NC_008345.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: son:SO4378 FAD-binding protein; tryptophan halogenase 370716 4277150 Sfri_0342 Shewanella frigidimarina NCIMB 400 tryptophan halogenase YP_749043.1 369448 R 318167 CDS YP_749044.1 114561531 4277151 complement(370706..373114) 1 NC_008345.1 KEGG: son:SO4377 hypothetical protein; hypothetical protein 373114 4277151 Sfri_0343 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749044.1 370706 R 318167 CDS YP_749045.1 114561532 4277152 complement(373114..373929) 1 NC_008345.1 KEGG: son:SO4376 hypothetical protein; hypothetical protein 373929 4277152 Sfri_0344 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749045.1 373114 R 318167 CDS YP_749046.1 114561533 4277153 complement(373929..374360) 1 NC_008345.1 KEGG: son:SO4375 hypothetical 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 374360 4277153 Sfri_0345 Shewanella frigidimarina NCIMB 400 4-hydroxybenzoyl-CoA thioesterase YP_749046.1 373929 R 318167 CDS YP_749047.1 114561534 4277154 complement(374361..375923) 1 NC_008345.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO4374 histidine ammonia-lyase, putative; histidine ammonia-lyase 375923 4277154 Sfri_0346 Shewanella frigidimarina NCIMB 400 histidine ammonia-lyase YP_749047.1 374361 R 318167 CDS YP_749048.1 114561535 4277155 complement(375928..377748) 1 NC_008345.1 PFAM: glycosyl transferase, family 2; lipid A biosynthesis acyltransferase; KEGG: son:SO4373 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 377748 4277155 Sfri_0347 Shewanella frigidimarina NCIMB 400 glycosyl transferase family protein YP_749048.1 375928 R 318167 CDS YP_749049.1 114561536 4277156 complement(377745..378137) 1 NC_008345.1 KEGG: son:SO4372 thioester dehydrase family protein; thioester dehydrase family protein 378137 4277156 Sfri_0348 Shewanella frigidimarina NCIMB 400 thioester dehydrase family protein YP_749049.1 377745 R 318167 CDS YP_749050.1 114561537 4277157 complement(378130..379497) 1 NC_008345.1 KEGG: son:SO4371 hypothetical protein; hypothetical protein 379497 4277157 Sfri_0349 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749050.1 378130 R 318167 CDS YP_749051.1 114561538 4277158 complement(379490..380041) 1 NC_008345.1 KEGG: son:SO4370 hypothetical protein; hypothetical protein 380041 4277158 Sfri_0350 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749051.1 379490 R 318167 CDS YP_749052.1 114561539 4277595 complement(380041..380289) 1 NC_008345.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 380289 4277595 Sfri_0351 Shewanella frigidimarina NCIMB 400 acyl carrier protein YP_749052.1 380041 R 318167 CDS YP_749053.1 114561540 4277596 complement(380298..380552) 1 NC_008345.1 KEGG: son:SO4368 acyl carrier protein, putative; hypothetical protein 380552 4277596 Sfri_0352 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749053.1 380298 R 318167 CDS YP_749054.1 114561541 4277597 complement(380581..381435) 1 NC_008345.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO4367 acyltransferase family protein; phospholipid/glycerol acyltransferase 381435 4277597 Sfri_0353 Shewanella frigidimarina NCIMB 400 phospholipid/glycerol acyltransferase YP_749054.1 380581 R 318167 CDS YP_749055.1 114561542 4277598 complement(381428..382207) 1 NC_008345.1 KEGG: son:SO4366 hypothetical protein; hypothetical protein 382207 4277598 Sfri_0354 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749055.1 381428 R 318167 CDS YP_749056.1 114561543 4277599 complement(382456..383343) 1 NC_008345.1 KEGG: son:SO4365 hypothetical protein; hypothetical protein 383343 4277599 Sfri_0355 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749056.1 382456 R 318167 CDS YP_749057.1 114561544 4277600 complement(383480..385597) 1 NC_008345.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 385597 4277600 Sfri_0356 Shewanella frigidimarina NCIMB 400 ATP-dependent DNA helicase RecG YP_749057.1 383480 R 318167 CDS YP_749058.1 114561545 4277601 complement(385696..386304) 1 NC_008345.1 PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO0351 DNA-binding response regulator, LuxR family; two component transcriptional regulator, LuxR family protein 386304 4277601 Sfri_0357 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, LuxR family protein YP_749058.1 385696 R 318167 CDS YP_749059.1 114561546 4277602 complement(386301..387395) 1 NC_008345.1 PFAM: histidine kinase, dimerisation and phosphoacceptor region; KEGG: son:SO0352 sensor histidine kinase, putative; histidine kinase, dimerisation and phosphoacceptor region 387395 4277602 Sfri_0358 Shewanella frigidimarina NCIMB 400 histidine kinase, dimerisation and phosphoacceptor region YP_749059.1 386301 R 318167 CDS YP_749060.1 114561547 4277603 complement(387473..388165) 1 NC_008345.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0353 TPR domain protein; TPR repeat-containing protein 388165 4277603 Sfri_0359 Shewanella frigidimarina NCIMB 400 TPR repeat-containing protein YP_749060.1 387473 R 318167 CDS YP_749061.1 114561548 4277604 complement(388373..389302) 1 NC_008345.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: son:SO0354 sodium/calcium exchanger; Na+/Ca+ antiporter, CaCA family protein 389302 4277604 Sfri_0360 Shewanella frigidimarina NCIMB 400 Na+/Ca+ antiporter, CaCA family protein YP_749061.1 388373 R 318167 CDS YP_749062.1 114561549 4277605 complement(389443..391170) 1 NC_008345.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0355 AMP-binding protein; AMP-dependent synthetase and ligase 391170 4277605 Sfri_0361 Shewanella frigidimarina NCIMB 400 AMP-dependent synthetase and ligase YP_749062.1 389443 R 318167 CDS YP_749063.1 114561550 4277606 complement(391345..391728) 1 NC_008345.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: son:SO0358 endoribonuclease L-PSP, putative; putative endoribonuclease L-PSP 391728 4277606 Sfri_0362 Shewanella frigidimarina NCIMB 400 putative endoribonuclease L-PSP YP_749063.1 391345 R 318167 CDS YP_749064.1 114561551 4277607 complement(391759..393867) 1 NC_008345.1 KEGG: son:SO0359 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 393867 4277607 Sfri_0363 Shewanella frigidimarina NCIMB 400 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_749064.1 391759 R 318167 CDS YP_749065.1 114561552 4277608 complement(393881..394159) 1 NC_008345.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 394159 rpoZ 4277608 rpoZ Shewanella frigidimarina NCIMB 400 DNA-directed RNA polymerase subunit omega YP_749065.1 393881 R 318167 CDS YP_749066.1 114561553 4277609 complement(394220..394843) 1 NC_008345.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 394843 gmk 4277609 gmk Shewanella frigidimarina NCIMB 400 guanylate kinase YP_749066.1 394220 R 318167 CDS YP_749067.1 114561554 4277610 395217..396506 1 NC_008345.1 KEGG: son:SO0362 hypothetical protein; hypothetical protein 396506 4277610 Sfri_0366 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749067.1 395217 D 318167 CDS YP_749068.1 114561555 4277611 396582..397652 1 NC_008345.1 PFAM: aminoglycoside phosphotransferase; KEGG: son:SO0364 hypothetical protein; aminoglycoside phosphotransferase 397652 4277611 Sfri_0367 Shewanella frigidimarina NCIMB 400 aminoglycoside phosphotransferase YP_749068.1 396582 D 318167 CDS YP_749069.1 114561556 4278784 397787..398488 1 NC_008345.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 398488 4278784 Sfri_0368 Shewanella frigidimarina NCIMB 400 nucleotidase YP_749069.1 397787 D 318167 CDS YP_749070.1 114561557 4278785 complement(398568..401225) 1 NC_008345.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: son:SO0280 penicillin-binding protein 1A; penicillin-binding protein, 1A family protein 401225 4278785 Sfri_0369 Shewanella frigidimarina NCIMB 400 penicillin-binding protein, 1A family protein YP_749070.1 398568 R 318167 CDS YP_749071.1 114561558 4278786 401339..402418 1 NC_008345.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: son:SO0281 type IV pilus biogenesis protein PilM; type IV pilus assembly protein PilM 402418 4278786 Sfri_0370 Shewanella frigidimarina NCIMB 400 type IV pilus assembly protein PilM YP_749071.1 401339 D 318167 CDS YP_749072.1 114561559 4278787 402406..402990 1 NC_008345.1 PFAM: Fimbrial assembly family protein; KEGG: son:SO0282 type IV pilus biogenesis protein PilN; fimbrial assembly family protein 402990 4278787 Sfri_0371 Shewanella frigidimarina NCIMB 400 fimbrial assembly family protein YP_749072.1 402406 D 318167 CDS YP_749073.1 114561560 4278788 402987..403604 1 NC_008345.1 PFAM: Pilus assembly protein, PilO; KEGG: son:SO0283 type IV pilus biogenesis protein PilO; pilus assembly protein, PilO 403604 4278788 Sfri_0372 Shewanella frigidimarina NCIMB 400 pilus assembly protein, PilO YP_749073.1 402987 D 318167 CDS YP_749074.1 114561561 4278789 403604..404122 1 NC_008345.1 PFAM: Pilus assembly protein, PilQ; KEGG: son:SO0284 type IV pilus biogenesis protein PilP; pilus assembly protein, PilQ 404122 4278789 Sfri_0373 Shewanella frigidimarina NCIMB 400 pilus assembly protein, PilQ YP_749074.1 403604 D 318167 CDS YP_749075.1 114561562 4278790 404144..406192 1 NC_008345.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain protein; KEGG: son:SO0285 type IV pilus biogenesis protein PilQ; type IV pilus secretin PilQ 406192 4278790 Sfri_0374 Shewanella frigidimarina NCIMB 400 type IV pilus secretin PilQ YP_749075.1 404144 D 318167 CDS YP_749076.1 114561563 4278791 406639..407154 1 NC_008345.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 407154 aroK 4278791 aroK Shewanella frigidimarina NCIMB 400 shikimate kinase I YP_749076.1 406639 D 318167 CDS YP_749077.1 114561564 4278792 407163..408239 1 NC_008345.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 408239 aroB 4278792 aroB Shewanella frigidimarina NCIMB 400 3-dehydroquinate synthase YP_749077.1 407163 D 318167 CDS YP_749078.1 114561565 4278793 408290..409693 1 NC_008345.1 PFAM: Sporulation domain protein; KEGG: son:SO0288 DamX domain protein; sporulation domain-containing protein 409693 4278793 Sfri_0377 Shewanella frigidimarina NCIMB 400 sporulation domain-containing protein YP_749078.1 408290 D 318167 CDS YP_749079.1 114561566 4278794 409826..410662 1 NC_008345.1 KEGG: son:SO0289 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 410662 4278794 Sfri_0378 Shewanella frigidimarina NCIMB 400 DNA adenine methylase YP_749079.1 409826 D 318167 CDS YP_749080.1 114561567 4278795 complement(410695..410874) 1 NC_008345.1 KEGG: son:SO0290 hypothetical protein; hypothetical protein 410874 4278795 Sfri_0379 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749080.1 410695 R 318167 CDS YP_749081.1 114561568 4278796 complement(410874..411269) 1 NC_008345.1 KEGG: son:SO0291 hypothetical protein; hypothetical protein 411269 4278796 Sfri_0380 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749081.1 410874 R 318167 CDS YP_749082.1 114561569 4278797 411523..412194 1 NC_008345.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: son:SO0292 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 412194 4278797 Sfri_0381 Shewanella frigidimarina NCIMB 400 ribulose-phosphate 3-epimerase YP_749082.1 411523 D 318167 CDS YP_749083.1 114561570 4278798 412225..412914 1 NC_008345.1 TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0293 phosphoglycolate phosphatase; phosphoglycolate phosphatase 412914 4278798 Sfri_0382 Shewanella frigidimarina NCIMB 400 phosphoglycolate phosphatase YP_749083.1 412225 D 318167 CDS YP_749084.1 114561571 4278799 412955..413953 1 NC_008345.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 413953 4278799 Sfri_0383 Shewanella frigidimarina NCIMB 400 tryptophanyl-tRNA synthetase YP_749084.1 412955 D 318167 CDS YP_749085.1 114561572 4278800 complement(413999..414868) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0295 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 414868 4278800 Sfri_0384 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_749085.1 413999 R 318167 CDS YP_749086.1 114561573 4278801 415010..415885 1 NC_008345.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO0296 integral membrane domain protein; hypothetical protein 415885 4278801 Sfri_0385 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749086.1 415010 D 318167 CDS YP_749087.1 114561574 4278226 complement(415922..416491) 1 NC_008345.1 PFAM: transport-associated; KEGG: son:SO0297 lipoprotein, putative; transport-associated 416491 4278226 Sfri_0386 Shewanella frigidimarina NCIMB 400 transport-associated YP_749087.1 415922 R 318167 CDS YP_749088.1 114561575 4278227 complement(416488..417081) 1 NC_008345.1 TIGRFAM: phosphoheptose isomerase; KEGG: son:SO0298 phosphoheptose isomerase; phosphoheptose isomerase 417081 4278227 Sfri_0387 Shewanella frigidimarina NCIMB 400 phosphoheptose isomerase YP_749088.1 416488 R 318167 CDS YP_749089.1 114561576 4278228 complement(417211..417537) 1 NC_008345.1 PFAM: protein of unknown function UPF0102; KEGG: son:SO0299 predicted endonuclease; hypothetical protein 417537 4278228 Sfri_0388 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749089.1 417211 R 318167 CDS YP_749090.1 114561577 4278229 complement(417534..419357) 1 NC_008345.1 PFAM: LppC family lipoprotein; KEGG: son:SO0300 lipoprotein, putative; LppC family lipoprotein 419357 4278229 Sfri_0389 Shewanella frigidimarina NCIMB 400 LppC family lipoprotein YP_749090.1 417534 R 318167 CDS YP_749091.1 114561578 4278230 419447..420289 1 NC_008345.1 TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO0301 hypothetical methyltransferase; hypothetical protein 420289 4278230 Sfri_0390 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749091.1 419447 D 318167 CDS YP_749092.1 114561579 4278231 421132..423270 1 NC_008345.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcb:XC_2846 iron receptor; TonB-dependent siderophore receptor 423270 4278231 Sfri_0391 Shewanella frigidimarina NCIMB 400 TonB-dependent siderophore receptor YP_749092.1 421132 D 318167 CDS YP_749093.1 114561580 4278232 complement(423365..425518) 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sde:Sde_2885 histidine kinase; TonB-dependent receptor, plug 425518 4278232 Sfri_0392 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor, plug YP_749093.1 423365 R 318167 CDS YP_749094.1 114561581 4278233 complement(426017..427696) 1 NC_008345.1 KEGG: son:SO0306 hypothetical protein; hypothetical protein 427696 4278233 Sfri_0393 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749094.1 426017 R 318167 CDS YP_749095.1 114561582 4278234 complement(427952..429172) 1 NC_008345.1 PFAM: protein of unknown function DUF1212; KEGG: son:SO0308 hypothetical protein; hypothetical protein 429172 4278234 Sfri_0394 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749095.1 427952 R 318167 CDS YP_749096.1 114561583 4278235 429336..429731 1 NC_008345.1 KEGG: son:SO0309 hypothetical protein; hypothetical protein 429731 4278235 Sfri_0395 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749096.1 429336 D 318167 CDS YP_749097.1 114561584 4278236 429934..432255 1 NC_008345.1 PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: son:SO0311 hypothetical Fe-S oxidoreductase; hypothetical protein 432255 4278236 Sfri_0396 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749097.1 429934 D 318167 CDS YP_749098.1 114561585 4278237 432456..433058 1 NC_008345.1 KEGG: son:SO0321 hypothetical protein; hypothetical protein 433058 4278237 Sfri_0397 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749098.1 432456 D 318167 CDS YP_749099.1 114561586 4278238 complement(433762..434805) 1 NC_008345.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: son:SO4548 transposase, IS110 family; transposase IS116/IS110/IS902 family protein 434805 4278238 Sfri_0399 Shewanella frigidimarina NCIMB 400 transposase IS116/IS110/IS902 family protein YP_749099.1 433762 R 318167 CDS YP_749100.1 114561587 4278239 435379..436218 1 NC_008345.1 hypothetical protein 436218 4278239 Sfri_0400 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749100.1 435379 D 318167 CDS YP_749101.1 114561588 4278240 436304..437137 1 NC_008345.1 KEGG: lpn:lpg2572 hypothetical protein; hypothetical protein 437137 4278240 Sfri_0401 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749101.1 436304 D 318167 CDS YP_749102.1 114561589 4278241 complement(437982..438563) 1 NC_008345.1 KEGG: son:SO0322 hypothetical protein; hypothetical protein 438563 4278241 Sfri_0402 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749102.1 437982 R 318167 CDS YP_749103.1 114561590 4278242 complement(438728..439666) 1 NC_008345.1 KEGG: son:SO0323 hypothetical protein; hypothetical protein 439666 4278242 Sfri_0403 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749103.1 438728 R 318167 CDS YP_749104.1 114561591 4277736 complement(439731..440123) 1 NC_008345.1 KEGG: son:SO0324 hypothetical protein; hypothetical protein 440123 4277736 Sfri_0404 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749104.1 439731 R 318167 CDS YP_749105.1 114561592 4277737 440484..441431 1 NC_008345.1 KEGG: son:SO0326 hypothetical protein; hypothetical protein 441431 4277737 Sfri_0405 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749105.1 440484 D 318167 CDS YP_749106.1 114561593 4277738 441539..441871 1 NC_008345.1 hypothetical protein 441871 4277738 Sfri_0406 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749106.1 441539 D 318167 CDS YP_749107.1 114561594 4277739 441861..443342 1 NC_008345.1 PFAM: protein of unknown function UPF0061; KEGG: son:SO0330 hypothetical protein; hypothetical protein 443342 4277739 Sfri_0407 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749107.1 441861 D 318167 CDS YP_749108.1 114561595 4277740 443368..443670 1 NC_008345.1 KEGG: son:SO0331 hypothetical protein; hypothetical protein 443670 4277740 Sfri_0408 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749108.1 443368 D 318167 CDS YP_749109.1 114561596 4277741 443681..444682 1 NC_008345.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 444682 4277741 Sfri_0409 Shewanella frigidimarina NCIMB 400 serine/threonine protein kinase YP_749109.1 443681 D 318167 CDS YP_749110.1 114561597 4277742 444814..445431 1 NC_008345.1 PFAM: DSBA oxidoreductase; KEGG: son:SO0333 thiol:disulfide interchange protein DsbA; DSBA oxidoreductase 445431 4277742 Sfri_0410 Shewanella frigidimarina NCIMB 400 DSBA oxidoreductase YP_749110.1 444814 D 318167 CDS YP_749111.1 114561598 4277743 445936..446139 1 NC_008345.1 PFAM: protein of unknown function DUF1107; KEGG: son:SO0334 hypothetical protein; hypothetical protein 446139 4277743 Sfri_0411 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749111.1 445936 D 318167 CDS YP_749112.1 114561599 4277744 complement(446145..446366) 1 NC_008345.1 PFAM: protein of unknown function DUF904; KEGG: son:SO0335 hypothetical protein; hypothetical protein 446366 4277744 Sfri_0412 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749112.1 446145 R 318167 CDS YP_749113.1 114561600 4277745 446539..446892 1 NC_008345.1 PFAM: Endoribonuclease L-PSP; KEGG: son:SO0337 hypothetical translation initiation inhibitor, YjgF family; endoribonuclease L-PSP 446892 4277745 Sfri_0413 Shewanella frigidimarina NCIMB 400 endoribonuclease L-PSP YP_749113.1 446539 D 318167 CDS YP_749114.1 114561601 4277746 447128..448219 1 NC_008345.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 448219 4277746 Sfri_0414 Shewanella frigidimarina NCIMB 400 branched-chain amino acid aminotransferase YP_749114.1 447128 D 318167 CDS YP_749115.1 114561602 4277747 complement(448276..452736) 1 NC_008345.1 KEGG: son:SO0341 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 452736 4277747 Sfri_0415 Shewanella frigidimarina NCIMB 400 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_749115.1 448276 R 318167 CDS YP_749116.1 114561603 4277748 complement(453023..453928) 1 NC_008345.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0347 acyltransferase family protein; putative acyltransferase 453928 4277748 Sfri_0416 Shewanella frigidimarina NCIMB 400 putative acyltransferase YP_749116.1 453023 R 318167 CDS YP_749117.1 114561604 4277749 complement(453935..454831) 1 NC_008345.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0348 acyltransferase family protein; putative acyltransferase 454831 4277749 Sfri_0417 Shewanella frigidimarina NCIMB 400 putative acyltransferase YP_749117.1 453935 R 318167 CDS YP_749118.1 114561605 4277750 complement(454911..456434) 1 NC_008345.1 KEGG: son:SO0349 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 456434 4277750 Sfri_0418 Shewanella frigidimarina NCIMB 400 Mg chelatase subunit ChlI YP_749118.1 454911 R 318167 CDS YP_749119.1 114561606 4277751 456801..458108 1 NC_008345.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO4351 CBS domain protein; hypothetical protein 458108 4277751 Sfri_0419 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749119.1 456801 D 318167 CDS YP_749120.1 114561607 4277752 complement(458141..459013) 1 NC_008345.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 459013 4277752 Sfri_0420 Shewanella frigidimarina NCIMB 400 DNA-binding transcriptional regulator IlvY YP_749120.1 458141 R 318167 CDS YP_749121.1 114561608 4277753 459222..460703 1 NC_008345.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 460703 4277753 Sfri_0421 Shewanella frigidimarina NCIMB 400 ketol-acid reductoisomerase YP_749121.1 459222 D 318167 CDS YP_749122.1 114561609 4278399 461286..462953 1 NC_008345.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 462953 4278399 Sfri_0422 Shewanella frigidimarina NCIMB 400 acetolactate synthase 2 catalytic subunit YP_749122.1 461286 D 318167 CDS YP_749123.1 114561610 4278400 462950..463207 1 NC_008345.1 KEGG: son:SO4346 acetolactate synthase small subunit; acetolactate synthase 2 regulatory subunit 463207 ilvM 4278400 ilvM Shewanella frigidimarina NCIMB 400 acetolactate synthase 2 regulatory subunit YP_749123.1 462950 D 318167 CDS YP_749124.1 114561611 4278401 463340..465199 1 NC_008345.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 465199 4278401 Sfri_0424 Shewanella frigidimarina NCIMB 400 dihydroxy-acid dehydratase YP_749124.1 463340 D 318167 CDS YP_749125.1 114561612 4278402 465201..466772 1 NC_008345.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 466772 4278402 Sfri_0425 Shewanella frigidimarina NCIMB 400 threonine dehydratase YP_749125.1 465201 D 318167 CDS YP_749126.1 114561613 4278403 467208..468350 1 NC_008345.1 PFAM: aminotransferase, class V; KEGG: son:SO4343 aminotransferase, class V; alanine--glyoxylate transaminase 468350 4278403 Sfri_0426 Shewanella frigidimarina NCIMB 400 alanine--glyoxylate transaminase YP_749126.1 467208 D 318167 CDS YP_749127.1 114561614 4278404 complement(468469..468720) 1 NC_008345.1 PFAM: protein of unknown function DUF526; KEGG: son:SO4329 hypothetical protein; hypothetical protein 468720 4278404 Sfri_0427 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749127.1 468469 R 318167 CDS YP_749128.1 114561615 4278405 468864..470876 1 NC_008345.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: son:SO4325 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep 470876 4278405 Sfri_0428 Shewanella frigidimarina NCIMB 400 ATP-dependent DNA helicase Rep YP_749128.1 468864 D 318167 CDS YP_749129.1 114561616 4278406 complement(470901..473525) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO4324 GGDEF domain protein; GAF sensor-containing diguanylate cyclase/phosphodiesterase 473525 4278406 Sfri_0429 Shewanella frigidimarina NCIMB 400 GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_749129.1 470901 R 318167 CDS YP_749130.1 114561617 4278407 complement(474956..476878) 1 NC_008345.1 PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO4323 GGDEF domain protein; diguanylate cyclase/phosphodiesterase 476878 4278407 Sfri_0430 Shewanella frigidimarina NCIMB 400 diguanylate cyclase/phosphodiesterase YP_749130.1 474956 R 318167 CDS YP_749131.1 114561618 4278408 complement(476886..477536) 1 NC_008345.1 KEGG: son:SO4322 hypothetical protein; hypothetical protein 477536 4278408 Sfri_0431 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749131.1 476886 R 318167 CDS YP_749132.1 114561619 4278409 complement(477619..478221) 1 NC_008345.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO4321 OmpA family protein; OmpA/MotB domain-containing protein 478221 4278409 Sfri_0432 Shewanella frigidimarina NCIMB 400 OmpA/MotB domain-containing protein YP_749132.1 477619 R 318167 CDS YP_749133.1 114561620 4278410 complement(478221..479630) 1 NC_008345.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: son:SO4320 agglutination protein; type I secretion outer membrane protein, TolC family protein 479630 4278410 Sfri_0433 Shewanella frigidimarina NCIMB 400 type I secretion outer membrane protein, TolC family protein YP_749133.1 478221 R 318167 CDS YP_749134.1 114561621 4278411 complement(479653..481035) 1 NC_008345.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: son:SO4319 HlyD family secretion protein; type I secretion membrane fusion protein, HlyD family protein 481035 4278411 Sfri_0434 Shewanella frigidimarina NCIMB 400 type I secretion membrane fusion protein, HlyD family protein YP_749134.1 479653 R 318167 CDS YP_749135.1 114561622 4278412 complement(481032..483209) 1 NC_008345.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase; KEGG: son:SO4318 toxin secretion ATP-binding protein; ABC transporter 483209 4278412 Sfri_0435 Shewanella frigidimarina NCIMB 400 ABC transporter YP_749135.1 481032 R 318167 CDS YP_749136.1 114561623 4278413 complement(483293..500656) 1 NC_008345.1 TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor, type A; Cadherin; KEGG: pfo:Pfl_0133 von Willebrand factor, type A; outer membrane adhesin-like protein 500656 4278413 Sfri_0436 Shewanella frigidimarina NCIMB 400 outer membrane adhesin-like protein YP_749136.1 483293 R 318167 CDS YP_749137.1 114561624 4278414 complement(501023..502192) 1 NC_008345.1 PFAM: HemY domain protein; KEGG: son:SO4316 HemY protein; HemY domain-containing protein 502192 4278414 Sfri_0437 Shewanella frigidimarina NCIMB 400 HemY domain-containing protein YP_749137.1 501023 R 318167 CDS YP_749138.1 114561625 4278415 complement(502189..503439) 1 NC_008345.1 PFAM: protein of unknown function DUF513, hemX; KEGG: son:SO4315 hemX protein; hypothetical protein 503439 4278415 Sfri_0438 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749138.1 502189 R 318167 CDS YP_749139.1 114561626 4278137 complement(503525..504244) 1 NC_008345.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: son:SO4314 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 504244 4278137 Sfri_0439 Shewanella frigidimarina NCIMB 400 uroporphyrinogen III synthase HEM4 YP_749139.1 503525 R 318167 CDS YP_749140.1 114561627 4278138 complement(504270..505199) 1 NC_008345.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 505199 hemC 4278138 hemC Shewanella frigidimarina NCIMB 400 porphobilinogen deaminase YP_749140.1 504270 R 318167 CDS YP_749141.1 114561628 4278139 505474..507933 1 NC_008345.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 507933 cyaA 4278139 cyaA Shewanella frigidimarina NCIMB 400 adenylate cyclase YP_749141.1 505474 D 318167 CDS YP_749142.1 114561629 4278140 complement(508004..508339) 1 NC_008345.1 PFAM: Frataxin family protein; KEGG: son:SO4311 CyaY protein; frataxin family protein 508339 4278140 Sfri_0442 Shewanella frigidimarina NCIMB 400 frataxin family protein YP_749142.1 508004 R 318167 CDS YP_749143.1 114561630 4278141 508407..508601 1 NC_008345.1 KEGG: son:SO4310 hypothetical protein; hypothetical protein 508601 4278141 Sfri_0443 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749143.1 508407 D 318167 CDS YP_749144.1 114561631 4278142 508622..509866 1 NC_008345.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: son:SO4309 diaminopimelate decarboxylase; diaminopimelate decarboxylase 509866 4278142 Sfri_0444 Shewanella frigidimarina NCIMB 400 diaminopimelate decarboxylase YP_749144.1 508622 D 318167 CDS YP_749145.1 114561632 4278143 509907..510734 1 NC_008345.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 510734 dapF 4278143 dapF Shewanella frigidimarina NCIMB 400 diaminopimelate epimerase YP_749145.1 509907 D 318167 CDS YP_749146.1 114561633 4278144 510731..511471 1 NC_008345.1 PFAM: protein of unknown function DUF484; KEGG: son:SO4307 hypothetical protein; hypothetical protein 511471 4278144 Sfri_0446 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749146.1 510731 D 318167 CDS YP_749147.1 114561634 4278145 511565..512464 1 NC_008345.1 TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO4306 integrase/recombinase XerC; tyrosine recombinase XerC 512464 4278145 Sfri_0447 Shewanella frigidimarina NCIMB 400 tyrosine recombinase XerC YP_749147.1 511565 D 318167 CDS YP_749148.1 114561635 4278146 512464..513204 1 NC_008345.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO4305 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; HAD family hydrolase 513204 4278146 Sfri_0448 Shewanella frigidimarina NCIMB 400 HAD family hydrolase YP_749148.1 512464 D 318167 CDS YP_749149.1 114561636 4278147 complement(513184..513699) 1 NC_008345.1 PFAM: AAA-4 family protein; KEGG: son:SO4303 hypothetical protein; putative transcriptional regulator 513699 4278147 Sfri_0449 Shewanella frigidimarina NCIMB 400 putative transcriptional regulator YP_749149.1 513184 R 318167 CDS YP_749150.1 114561637 4278148 complement(513820..514353) 1 NC_008345.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: son:SO4302 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 514353 4278148 Sfri_0450 Shewanella frigidimarina NCIMB 400 hemerythrin HHE cation binding domain-containing protein YP_749150.1 513820 R 318167 CDS YP_749151.1 114561638 4278149 complement(514448..515704) 1 NC_008345.1 PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: cps:CPS_3966 kelch motif domain protein; kelch repeat-containing protein 515704 4278149 Sfri_0451 Shewanella frigidimarina NCIMB 400 kelch repeat-containing protein YP_749151.1 514448 R 318167 CDS YP_749152.1 114561639 4278150 516325..519312 1 NC_008345.1 PFAM: UvrD/REP helicase; DNA topoisomerase, type IA, zn finger domain protein; KEGG: cps:CPS_2454 helicase IV; UvrD/REP helicase 519312 4278150 Sfri_0452 Shewanella frigidimarina NCIMB 400 UvrD/REP helicase YP_749152.1 516325 D 318167 CDS YP_749153.1 114561640 4278151 complement(519454..519759) 1 NC_008345.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 519759 fis 4278151 fis Shewanella frigidimarina NCIMB 400 DNA-binding protein Fis YP_749153.1 519454 R 318167 CDS YP_749154.1 114561641 4278152 complement(519783..520745) 1 NC_008345.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; dihydroorotate dehydrogenase; KEGG: son:SO0394 tRNA-dihydrouridine synthase B; putative TIM-barrel protein, nifR3 family protein 520745 4278152 Sfri_0454 Shewanella frigidimarina NCIMB 400 putative TIM-barrel protein, nifR3 family protein YP_749154.1 519783 R 318167 CDS YP_749155.1 114561642 4278153 complement(521043..521924) 1 NC_008345.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 521924 prmA 4278153 prmA Shewanella frigidimarina NCIMB 400 50S ribosomal protein L11 methyltransferase YP_749155.1 521043 R 318167 CDS YP_749156.1 114561643 4278154 522446..523189 1 NC_008345.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 523189 4278154 Sfri_0456 Shewanella frigidimarina NCIMB 400 fumarate reductase cytochrome b-556 subunit YP_749156.1 522446 D 318167 CDS YP_749157.1 114561644 4277070 523199..525199 1 NC_008345.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 525199 4277070 Sfri_0457 Shewanella frigidimarina NCIMB 400 fumarate reductase flavoprotein subunit YP_749157.1 523199 D 318167 CDS YP_749158.1 114561645 4277071 525201..525926 1 NC_008345.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 525926 frdB 4277071 frdB Shewanella frigidimarina NCIMB 400 fumarate reductase iron-sulfur subunit YP_749158.1 525201 D 318167 CDS YP_749159.1 114561646 4277072 complement(526763..528025) 1 NC_008345.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 528025 rho 4277072 rho Shewanella frigidimarina NCIMB 400 transcription termination factor Rho YP_749159.1 526763 R 318167 CDS YP_749160.1 114561647 4277073 complement(528248..528574) 1 NC_008345.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0406 thioredoxin 1; thioredoxin 528574 4277073 Sfri_0460 Shewanella frigidimarina NCIMB 400 thioredoxin YP_749160.1 528248 R 318167 CDS YP_749161.1 114561648 4277074 528728..530032 1 NC_008345.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 530032 4277074 Sfri_0461 Shewanella frigidimarina NCIMB 400 ATP-dependent RNA helicase RhlB YP_749161.1 528728 D 318167 CDS YP_749162.1 114561649 4277075 530036..530977 1 NC_008345.1 PFAM: Ppx/GppA phosphatase; KEGG: son:SO0408 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase; Ppx/GppA phosphatase 530977 4277075 Sfri_0462 Shewanella frigidimarina NCIMB 400 Ppx/GppA phosphatase YP_749162.1 530036 D 318167 CDS YP_749163.1 114561650 4277076 complement(531094..531696) 1 NC_008345.1 KEGG: son:SO0409 hypothetical protein; hypothetical protein 531696 4277076 Sfri_0463 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749163.1 531094 R 318167 CDS YP_749164.1 114561651 4277077 complement(531846..532574) 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: par:Psyc_0937 putative transposase OrfB; integrase catalytic subunit 532574 4277077 Sfri_0464 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_749164.1 531846 R 318167 CDS YP_749165.1 114561652 4277078 complement(532679..533074) 1 NC_008345.1 KEGG: dde:Dde_2987 transposase; transposase 533074 4277078 Sfri_0465 Shewanella frigidimarina NCIMB 400 transposase YP_749165.1 532679 R 318167 CDS YP_749166.1 114561653 4277079 complement(533177..534190) 1 NC_008345.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 534190 4277079 Sfri_0466 Shewanella frigidimarina NCIMB 400 delta-aminolevulinic acid dehydratase YP_749166.1 533177 R 318167 CDS YP_749167.1 114561654 4277080 complement(534205..536130) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, transmembrane region; KEGG: son:SO4207 GGDEF domain protein; diguanylate cyclase 536130 4277080 Sfri_0467 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_749167.1 534205 R 318167 CDS YP_749168.1 114561655 4277081 complement(536130..536945) 1 NC_008345.1 PFAM: TatD-related deoxyribonuclease; KEGG: son:SO4206 hydrolase, TatD family; TatD-related deoxyribonuclease 536945 4277081 Sfri_0468 Shewanella frigidimarina NCIMB 400 TatD-related deoxyribonuclease YP_749168.1 536130 R 318167 CDS YP_749169.1 114561656 4277082 complement(536964..537500) 1 NC_008345.1 KEGG: son:SO4205 hypothetical protein; hypothetical protein 537500 4277082 Sfri_0469 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749169.1 536964 R 318167 CDS YP_749170.1 114561657 4277083 complement(537546..538292) 1 NC_008345.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: son:SO4204 Sec-independent periplasmic protein translocation protein TatC; Sec-independent protein translocase subunit TatC 538292 4277083 Sfri_0470 Shewanella frigidimarina NCIMB 400 Sec-independent protein translocase subunit TatC YP_749170.1 537546 R 318167 CDS YP_749171.1 114561658 4277084 complement(538305..538709) 1 NC_008345.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: son:SO4203 Sec-independent protein translocase protein TatB; twin-arginine translocation protein subunit TatB 538709 4277084 Sfri_0471 Shewanella frigidimarina NCIMB 400 twin-arginine translocation protein subunit TatB YP_749171.1 538305 R 318167 CDS YP_749172.1 114561659 4277085 complement(538716..538961) 1 NC_008345.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: son:SO4202 Sec-independent protein translocase protein TatA; twin arginine-targeting protein translocase 538961 4277085 Sfri_0472 Shewanella frigidimarina NCIMB 400 twin arginine-targeting protein translocase YP_749172.1 538716 R 318167 CDS YP_749173.1 114561660 4277086 complement(539071..540720) 1 NC_008345.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: son:SO4201 ubiquinone biosynthesis protein AarF; 2-polyprenylphenol 6-hydroxylase 540720 4277086 Sfri_0473 Shewanella frigidimarina NCIMB 400 2-polyprenylphenol 6-hydroxylase YP_749173.1 539071 R 318167 CDS YP_749174.1 114561661 4278538 complement(540717..541337) 1 NC_008345.1 PFAM: protein of unknown function DUF1243; KEGG: son:SO4200 conserved hypothetical protein; hypothetical protein 541337 4278538 Sfri_0474 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749174.1 540717 R 318167 CDS YP_749175.1 114561662 4278539 complement(541337..542092) 1 NC_008345.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4199 ubiquinone/menaquinone biosynthesis methlytransferase UbiE; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase LpxD 542092 4278539 Sfri_0475 Shewanella frigidimarina NCIMB 400 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase LpxD YP_749175.1 541337 R 318167 CDS YP_749176.1 114561663 4278540 complement(542349..543377) 1 NC_008345.1 PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: son:SO4198 arginase family protein; arginase/agmatinase/formiminoglutamase 543377 4278540 Sfri_0476 Shewanella frigidimarina NCIMB 400 arginase/agmatinase/formiminoglutamase YP_749176.1 542349 R 318167 CDS YP_749177.1 114561664 4278541 complement(543476..543961) 1 NC_008345.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 543961 4278541 Sfri_0477 Shewanella frigidimarina NCIMB 400 ribonuclease activity regulator protein RraA YP_749177.1 543476 R 318167 CDS YP_749178.1 114561665 4278542 544348..544596 1 NC_008345.1 KEGG: son:SO4196 hypothetical protein; hypothetical protein 544596 4278542 Sfri_0478 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749178.1 544348 D 318167 CDS YP_749179.1 114561666 4278543 545053..545565 1 NC_008345.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO4195 PAP2 family protein; PA-phosphatase-like phosphoesterase 545565 4278543 Sfri_0479 Shewanella frigidimarina NCIMB 400 PA-phosphatase-like phosphoesterase YP_749179.1 545053 D 318167 CDS YP_749180.1 114561667 4278544 545723..546772 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO4194 hypothetical protein; hypothetical protein 546772 4278544 Sfri_0480 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749180.1 545723 D 318167 CDS YP_749181.1 114561668 4278545 complement(546845..547312) 1 NC_008345.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 547312 4278545 Sfri_0481 Shewanella frigidimarina NCIMB 400 anti-RNA polymerase sigma 70 factor YP_749181.1 546845 R 318167 CDS YP_749182.1 114561669 4278546 547769..548833 1 NC_008345.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 548833 hemE 4278546 hemE Shewanella frigidimarina NCIMB 400 uroporphyrinogen decarboxylase YP_749182.1 547769 D 318167 CDS YP_749183.1 114561670 4278547 549493..549789 1 NC_008345.1 hypothetical protein 549789 4278547 Sfri_0483 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749183.1 549493 D 318167 CDS YP_749184.1 114561671 4278548 complement(549967..551424) 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cps:CPS_0650 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 551424 4278548 Sfri_0484 Shewanella frigidimarina NCIMB 400 periplasmic sensor signal transduction histidine kinase YP_749184.1 549967 R 318167 CDS YP_749185.1 114561672 4278549 complement(551424..552158) 1 NC_008345.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sde:Sde_3703 response regulator receiver domain protein (CheY-like); two component transcriptional regulator, winged helix family protein 552158 4278549 Sfri_0485 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, winged helix family protein YP_749185.1 551424 R 318167 CDS YP_749186.1 114561673 4278550 complement(552269..552994) 1 NC_008345.1 KEGG: cps:CPS_0652 hypothetical protein; hypothetical protein 552994 4278550 Sfri_0486 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749186.1 552269 R 318167 CDS YP_749187.1 114561674 4278551 complement(553006..553707) 1 NC_008345.1 KEGG: sde:Sde_3701 hypothetical protein; hypothetical protein 553707 4278551 Sfri_0487 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749187.1 553006 R 318167 CDS YP_749188.1 114561675 4278552 553850..554407 1 NC_008345.1 KEGG: cps:CPS_4285 acetyltransferase, GNAT family; GNAT family acetyltransferase 554407 4278552 Sfri_0488 Shewanella frigidimarina NCIMB 400 GNAT family acetyltransferase YP_749188.1 553850 D 318167 CDS YP_749189.1 114561676 4278553 554447..555787 1 NC_008345.1 PFAM: FAD dependent oxidoreductase; KEGG: cps:CPS_1461 putative oxidoreductase; FAD dependent oxidoreductase 555787 4278553 Sfri_0489 Shewanella frigidimarina NCIMB 400 FAD dependent oxidoreductase YP_749189.1 554447 D 318167 CDS YP_749190.1 114561677 4278554 complement(555821..557320) 1 NC_008345.1 PFAM: Na+/H+ antiporter NhaC; KEGG: pha:PSHAa1677 Na+/H+ antiporter NnaC; Na+/H+ antiporter NhaC 557320 4278554 Sfri_0490 Shewanella frigidimarina NCIMB 400 Na+/H+ antiporter NhaC YP_749190.1 555821 R 318167 CDS YP_749191.1 114561678 4278555 complement(557680..557898) 1 NC_008345.1 KEGG: son:SO0439 hypothetical protein; hypothetical protein 557898 4278555 Sfri_0491 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749191.1 557680 R 318167 CDS YP_749192.1 114561679 4278573 complement(558155..559456) 1 NC_008345.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 559456 4278573 Sfri_0492 Shewanella frigidimarina NCIMB 400 phosphoribosylamine--glycine ligase YP_749192.1 558155 R 318167 CDS YP_749193.1 114561680 4278574 complement(559676..561265) 1 NC_008345.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 561265 purH 4278574 purH Shewanella frigidimarina NCIMB 400 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_749193.1 559676 R 318167 CDS YP_749194.1 114561681 4278575 561573..562034 1 NC_008345.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 562034 zntR 4278575 zntR Shewanella frigidimarina NCIMB 400 zinc-responsive transcriptional regulator YP_749194.1 561573 D 318167 CDS YP_749195.1 114561682 4278576 562037..563569 1 NC_008345.1 PFAM: permease; KEGG: son:SO0444 hypothetical protein; permease 563569 4278576 Sfri_0495 Shewanella frigidimarina NCIMB 400 permease YP_749195.1 562037 D 318167 CDS YP_749196.1 114561683 4278577 complement(564100..564222) 1 NC_008345.1 hypothetical protein 564222 4278577 Sfri_0497 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749196.1 564100 R 318167 CDS YP_749197.1 114561684 4278578 complement(564496..565434) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0523 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 565434 4278578 Sfri_0498 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_749197.1 564496 R 318167 CDS YP_749198.1 114561685 4278579 565531..566625 1 NC_008345.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO0524 HlyD family secretion protein; secretion protein HlyD family protein 566625 4278579 Sfri_0499 Shewanella frigidimarina NCIMB 400 secretion protein HlyD family protein YP_749198.1 565531 D 318167 CDS YP_749199.1 114561686 4278580 566627..568258 1 NC_008345.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0525 drug resistance transporter, EmrB/QacA family protein; EmrB/QacA family drug resistance transporter 568258 4278580 Sfri_0500 Shewanella frigidimarina NCIMB 400 EmrB/QacA family drug resistance transporter YP_749199.1 566627 D 318167 CDS YP_749200.1 114561687 4278581 568305..568769 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0526 acetyltransferase, GNAT family; N-acetyltransferase GCN5 568769 4278581 Sfri_0501 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_749200.1 568305 D 318167 CDS YP_749201.1 114561688 4278582 568866..569183 1 NC_008345.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0527 hypothetical protein; antibiotic biosynthesis monooxygenase 569183 4278582 Sfri_0502 Shewanella frigidimarina NCIMB 400 antibiotic biosynthesis monooxygenase YP_749201.1 568866 D 318167 CDS YP_749202.1 114561689 4278583 complement(569378..570421) 1 NC_008345.1 PFAM: porin, Gram-negative type; KEGG: son:SO3896 outer membrane porin, putative; porin 570421 4278583 Sfri_0503 Shewanella frigidimarina NCIMB 400 porin YP_749202.1 569378 R 318167 CDS YP_749203.1 114561690 4278584 571212..572015 1 NC_008345.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: son:SO3895 HesA/MoeB/ThiF family protein; UBA/THIF-type NAD/FAD binding protein 572015 4278584 Sfri_0504 Shewanella frigidimarina NCIMB 400 UBA/THIF-type NAD/FAD binding protein YP_749203.1 571212 D 318167 CDS YP_749204.1 114561691 4278585 complement(572026..573618) 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3894 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 573618 4278585 Sfri_0505 Shewanella frigidimarina NCIMB 400 periplasmic sensor signal transduction histidine kinase YP_749204.1 572026 R 318167 CDS YP_749205.1 114561692 4278586 573849..574460 1 NC_008345.1 KEGG: son:SO3892 hypothetical protein; hypothetical protein 574460 4278586 Sfri_0506 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749205.1 573849 D 318167 CDS YP_749206.1 114561693 4278587 complement(574647..574778) 1 NC_008345.1 KEGG: ppr:PBPRA2831 conserved hypothetical protein; hypothetical protein 574778 4278587 Sfri_0507 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749206.1 574647 R 318167 CDS YP_749207.1 114561694 4278588 complement(575637..577280) 1 NC_008345.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; 4-vinyl reductase, 4VR; SMART: AAA ATPase; KEGG: gme:Gmet_2116 transcriptional regulator, fis family; sigma54 specific transcriptional regulator, Fis family protein 577280 4278588 Sfri_0508 Shewanella frigidimarina NCIMB 400 sigma54 specific transcriptional regulator, Fis family protein YP_749207.1 575637 R 318167 CDS YP_749208.1 114561695 4278589 complement(577479..577835) 1 NC_008345.1 KEGG: son:SO3056 tetraheme cytochrome c; tetraheme cytochrome c 577835 4278589 Sfri_0509 Shewanella frigidimarina NCIMB 400 tetraheme cytochrome c YP_749208.1 577479 R 318167 CDS YP_749209.1 114561696 4278643 complement(577874..579076) 1 NC_008345.1 KEGG: ilo:IL2008 secreted protein of porin family; secreted porin family protein 579076 4278643 Sfri_0510 Shewanella frigidimarina NCIMB 400 secreted porin family protein YP_749209.1 577874 R 318167 CDS YP_749210.1 114561697 4278644 complement(579146..580678) 1 NC_008345.1 KEGG: dsy:DSY2606 putative fumarate reductase flavoprotein subunit; TIGRFAM: Twin-arginine translocation pathway signal; flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; flavocytochrome c 580678 4278644 Sfri_0511 Shewanella frigidimarina NCIMB 400 flavocytochrome c YP_749210.1 579146 R 318167 CDS YP_749211.1 114561698 4278645 581602..582300 1 NC_008345.1 hypothetical protein 582300 4278645 Sfri_0512 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749211.1 581602 D 318167 CDS YP_749212.1 114561699 4278646 complement(582403..586041) 1 NC_008345.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO3800 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 586041 4278646 Sfri_0513 Shewanella frigidimarina NCIMB 400 peptidase S8/S53 subtilisin kexin sedolisin YP_749212.1 582403 R 318167 CDS YP_749213.1 114561700 4278647 complement(586334..586795) 1 NC_008345.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 586795 4278647 Sfri_0514 Shewanella frigidimarina NCIMB 400 DNA-binding transcriptional regulator AsnC YP_749213.1 586334 R 318167 CDS YP_749214.1 114561701 4278648 complement(586896..587573) 1 NC_008345.1 PFAM: pseudouridine synthase; KEGG: hch:HCH_04661 pseudouridylate synthases, 23S RNA-specific; pseudouridylate synthase 587573 4278648 Sfri_0515 Shewanella frigidimarina NCIMB 400 pseudouridylate synthase YP_749214.1 586896 R 318167 CDS YP_749215.1 114561702 4278649 complement(587668..587958) 1 NC_008345.1 KEGG: son:SO0973 hypothetical protein; hypothetical protein 587958 4278649 Sfri_0516 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749215.1 587668 R 318167 CDS YP_749216.1 114561703 4278650 complement(587991..588410) 1 NC_008345.1 KEGG: son:SO0971 hypothetical protein; hypothetical protein 588410 4278650 Sfri_0517 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749216.1 587991 R 318167 CDS YP_749217.1 114561704 4278651 588987..589976 1 NC_008345.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO0968 D-lactate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 589976 4278651 Sfri_0518 Shewanella frigidimarina NCIMB 400 D-isomer specific 2-hydroxyacid dehydrogenase YP_749217.1 588987 D 318167 CDS YP_749218.1 114561705 4278652 590077..590814 1 NC_008345.1 PFAM: dienelactone hydrolase; KEGG: pha:PSHAa2188 hydrolase; dienelactone hydrolase 590814 4278652 Sfri_0519 Shewanella frigidimarina NCIMB 400 dienelactone hydrolase YP_749218.1 590077 D 318167 CDS YP_749219.1 114561706 4278653 complement(590884..591423) 1 NC_008345.1 KEGG: son:SO0961 hypothetical protein; hypothetical protein 591423 4278653 Sfri_0520 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749219.1 590884 R 318167 CDS YP_749220.1 114561707 4278654 591575..592318 1 NC_008345.1 KEGG: son:SO0960 hypothetical spermidine synthase; putative spermidine synthase 592318 4278654 Sfri_0521 Shewanella frigidimarina NCIMB 400 putative spermidine synthase YP_749220.1 591575 D 318167 CDS YP_749221.1 114561708 4278655 592539..593108 1 NC_008345.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO0958 alkyl hydroperoxide reductase, C subunit; alkyl hydroperoxide reductase 593108 4278655 Sfri_0522 Shewanella frigidimarina NCIMB 400 alkyl hydroperoxide reductase YP_749221.1 592539 D 318167 CDS YP_749222.1 114561709 4278656 593221..594786 1 NC_008345.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0956 alkyl hydroperoxide reductase, F subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 594786 4278656 Sfri_0523 Shewanella frigidimarina NCIMB 400 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_749222.1 593221 D 318167 CDS YP_749223.1 114561710 4278657 595234..596853 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: hch:HCH_06069 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 596853 4278657 Sfri_0524 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_749223.1 595234 D 318167 CDS YP_749224.1 114561711 4278658 597251..600922 1 NC_008345.1 KEGG: son:SO4008 hypothetical protein; hypothetical protein 600922 4278658 Sfri_0525 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749224.1 597251 D 318167 CDS YP_749225.1 114561712 4278659 600922..601575 1 NC_008345.1 KEGG: son:SO4007 hypothetical protein; hypothetical protein 601575 4278659 Sfri_0526 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749225.1 600922 D 318167 CDS YP_749226.1 114561713 4278660 601572..602792 1 NC_008345.1 KEGG: son:SO4006 hypothetical protein; hypothetical protein 602792 4278660 Sfri_0527 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749226.1 601572 D 318167 CDS YP_749227.1 114561714 4276948 602780..603784 1 NC_008345.1 KEGG: son:SO4005 hypothetical protein; hypothetical protein 603784 4276948 Sfri_0528 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749227.1 602780 D 318167 CDS YP_749228.1 114561715 4276949 604347..605468 1 NC_008345.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO4004 proton/glutamate symporter, putative; sodium:dicarboxylate symporter 605468 4276949 Sfri_0529 Shewanella frigidimarina NCIMB 400 sodium:dicarboxylate symporter YP_749228.1 604347 D 318167 CDS YP_749229.1 114561716 4276950 complement(605615..606826) 1 NC_008345.1 hypothetical protein 606826 4276950 Sfri_0530 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749229.1 605615 R 318167 CDS YP_749230.1 114561717 4276951 complement(607034..608026) 1 NC_008345.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 608026 4276951 Sfri_0531 Shewanella frigidimarina NCIMB 400 fructose-1,6-bisphosphatase YP_749230.1 607034 R 318167 CDS YP_749231.1 114561718 4276952 608202..610505 1 NC_008345.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: son:SO3990 dipeptidyl peptidase IV; peptidase S9B dipeptidylpeptidase IV subunit 610505 4276952 Sfri_0532 Shewanella frigidimarina NCIMB 400 peptidase S9B dipeptidylpeptidase IV subunit YP_749231.1 608202 D 318167 CDS YP_749232.1 114561719 4276953 complement(610595..611311) 1 NC_008345.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO3988 aerobic respiration control protein ArcA; two-component response regulator 611311 4276953 Sfri_0533 Shewanella frigidimarina NCIMB 400 two-component response regulator YP_749232.1 610595 R 318167 CDS YP_749233.1 114561720 4276954 611977..612420 1 NC_008345.1 KEGG: son:SO3987 hypothetical protein; hypothetical protein 612420 4276954 Sfri_0534 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749233.1 611977 D 318167 CDS YP_749234.1 114561721 4276955 613005..614384 1 NC_008345.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 614384 4276955 Sfri_0535 Shewanella frigidimarina NCIMB 400 aspartate kinase III YP_749234.1 613005 D 318167 CDS YP_749235.1 114561722 4276956 614754..615872 1 NC_008345.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO3985 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 615872 4276956 Sfri_0536 Shewanella frigidimarina NCIMB 400 succinylglutamate desuccinylase/aspartoacylase YP_749235.1 614754 D 318167 CDS YP_749236.1 114561723 4276957 complement(615944..617080) 1 NC_008345.1 PFAM: peptidase M50; KEGG: son:SO0823 hypothetical protein; peptidase M50 617080 4276957 Sfri_0537 Shewanella frigidimarina NCIMB 400 peptidase M50 YP_749236.1 615944 R 318167 CDS YP_749237.1 114561724 4276958 complement(617296..617658) 1 NC_008345.1 KEGG: son:SO0824 hypothetical protein; hypothetical protein 617658 4276958 Sfri_0538 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749237.1 617296 R 318167 CDS YP_749238.1 114561725 4276959 complement(617703..619370) 1 NC_008345.1 PFAM: protein of unknown function DUF342; KEGG: son:SO0826 hypothetical protein; hypothetical protein 619370 4276959 Sfri_0539 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749238.1 617703 R 318167 CDS YP_749239.1 114561726 4276960 complement(619548..620585) 1 NC_008345.1 PFAM: methyltransferase small; Methyltransferase small, N-terminal domain protein; KEGG: son:SO0828 ribosomal RNA small subunit methyltransferase C; rRNA (guanine-N(2)-)-methyltransferase 620585 4276960 Sfri_0540 Shewanella frigidimarina NCIMB 400 rRNA (guanine-N(2)-)-methyltransferase YP_749239.1 619548 R 318167 CDS YP_749240.1 114561727 4276961 complement(620690..622057) 1 NC_008345.1 PFAM: Alkaline phosphatase; KEGG: son:SO0830 alkaline phosphatase; alkaline phosphatase 622057 4276961 Sfri_0541 Shewanella frigidimarina NCIMB 400 alkaline phosphatase YP_749240.1 620690 R 318167 CDS YP_749241.1 114561728 4276962 complement(622066..623019) 1 NC_008345.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 623019 4276962 Sfri_0542 Shewanella frigidimarina NCIMB 400 glutathione synthetase YP_749241.1 622066 R 318167 CDS YP_749242.1 114561729 4276963 complement(623058..623798) 1 NC_008345.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 623798 4276963 Sfri_0543 Shewanella frigidimarina NCIMB 400 16S ribosomal RNA methyltransferase RsmE YP_749242.1 623058 R 318167 CDS YP_749243.1 114561730 4276964 complement(623849..624613) 1 NC_008345.1 PFAM: Endonuclease I; KEGG: son:SO0833 endonuclease I; deoxyribonuclease I 624613 4276964 Sfri_0544 Shewanella frigidimarina NCIMB 400 deoxyribonuclease I YP_749243.1 623849 R 318167 CDS YP_749244.1 114561731 4278713 complement(624707..625318) 1 NC_008345.1 PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: son:SO0834 sprT protein, putative; hypothetical protein 625318 4278713 Sfri_0545 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749244.1 624707 R 318167 CDS YP_749245.1 114561732 4278714 complement(625401..626585) 1 NC_008345.1 KEGG: son:SO0835 hypothetical protein; hypothetical protein 626585 4278714 Sfri_0546 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749245.1 625401 R 318167 CDS YP_749246.1 114561733 4278715 complement(626923..627834) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0839 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 627834 4278715 Sfri_0547 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_749246.1 626923 R 318167 CDS YP_749247.1 114561734 4278716 627964..632517 1 NC_008345.1 PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase; carbamoyl-phosphate synthase subunit L 632517 4278716 Sfri_0548 Shewanella frigidimarina NCIMB 400 carbamoyl-phosphate synthase subunit L YP_749247.1 627964 D 318167 CDS YP_749248.1 114561735 4278717 632671..634137 1 NC_008345.1 KEGG: son:SO0841 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3; diguanylate cyclase 634137 4278717 Sfri_0549 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_749248.1 632671 D 318167 CDS YP_749249.1 114561736 4278718 634530..636623 1 NC_008345.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 636623 4278718 Sfri_0550 Shewanella frigidimarina NCIMB 400 elongation factor G YP_749249.1 634530 D 318167 CDS YP_749250.1 114561737 4278719 complement(636730..637614) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0843 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 637614 4278719 Sfri_0551 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_749250.1 636730 R 318167 CDS YP_749251.1 114561738 4278720 complement(638003..638434) 1 NC_008345.1 KEGG: son:SO0845 cytochrome c-type protein NapB; cytochrome c-type protein NapB 638434 4278720 Sfri_0552 Shewanella frigidimarina NCIMB 400 cytochrome c-type protein NapB YP_749251.1 638003 R 318167 CDS YP_749252.1 114561739 4278721 complement(638536..641019) 1 NC_008345.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 641019 4278721 Sfri_0553 Shewanella frigidimarina NCIMB 400 nitrate reductase catalytic subunit YP_749252.1 638536 R 318167 CDS YP_749253.1 114561740 4278722 complement(641432..642619) 1 NC_008345.1 KEGG: son:SO0855 hypothetical protein; hypothetical protein 642619 4278722 Sfri_0554 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749253.1 641432 R 318167 CDS YP_749254.1 114561741 4278723 complement(642616..645213) 1 NC_008345.1 PFAM: protein of unknown function DUF214; KEGG: son:SO0856 putative ABC transport system permease protein; hypothetical protein 645213 4278723 Sfri_0555 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749254.1 642616 R 318167 CDS YP_749255.1 114561742 4278724 complement(645218..645922) 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0857 ABC transporter, ATP-binding protein; ABC transporter 645922 4278724 Sfri_0556 Shewanella frigidimarina NCIMB 400 ABC transporter YP_749255.1 645218 R 318167 CDS YP_749256.1 114561743 4278725 complement(646068..647030) 1 NC_008345.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: son:SO0861 hypothetical protein; glycine cleavage T protein (aminomethyl transferase) 647030 4278725 Sfri_0557 Shewanella frigidimarina NCIMB 400 glycine cleavage T protein (aminomethyl transferase) YP_749256.1 646068 R 318167 CDS YP_749257.1 114561744 4278726 complement(647203..648432) 1 NC_008345.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 648432 4278726 Sfri_0558 Shewanella frigidimarina NCIMB 400 D-3-phosphoglycerate dehydrogenase YP_749257.1 647203 R 318167 CDS YP_749258.1 114561745 4278727 648625..649248 1 NC_008345.1 KEGG: son:SO0863 hypothetical protein; hypothetical protein 649248 4278727 Sfri_0559 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749258.1 648625 D 318167 CDS YP_749259.1 114561746 4278728 649717..650385 1 NC_008345.1 PFAM: regulatory protein, LuxR; KEGG: son:SO0864 transcriptional regulator, LuxR family; transcriptional regulator, LuxR family protein 650385 4278728 Sfri_0560 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LuxR family protein YP_749259.1 649717 D 318167 CDS YP_749260.1 114561747 4278729 650531..650968 1 NC_008345.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO1068 hypothetical protein; hypothetical protein 650968 4278729 Sfri_0561 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749260.1 650531 D 318167 CDS YP_749261.1 114561748 4278730 651194..651436 1 NC_008345.1 KEGG: son:SO1069 hypothetical protein; hypothetical protein 651436 4278730 Sfri_0562 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749261.1 651194 D 318167 CDS YP_749262.1 114561749 4278504 651700..653160 1 NC_008345.1 PFAM: Catalase domain protein; KEGG: son:SO1070 catalase; catalase 653160 4278504 Sfri_0563 Shewanella frigidimarina NCIMB 400 catalase YP_749262.1 651700 D 318167 CDS YP_749263.1 114561750 4278505 complement(653315..654799) 1 NC_008345.1 PFAM: adenylate cyclase; KEGG: son:SO3769 hypothetical protein; adenylate cyclase 654799 4278505 Sfri_0564 Shewanella frigidimarina NCIMB 400 adenylate cyclase YP_749263.1 653315 R 318167 CDS YP_749264.1 114561751 4278506 655036..655716 1 NC_008345.1 PFAM: protein of unknown function DUF47; KEGG: son:SO3770 conserved hypothetical protein TIGR00153; hypothetical protein 655716 4278506 Sfri_0565 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749264.1 655036 D 318167 CDS YP_749265.1 114561752 4278507 655742..657010 1 NC_008345.1 PFAM: phosphate transporter; KEGG: son:SO3771 phosphate transporter, putative; phosphate transporter 657010 4278507 Sfri_0566 Shewanella frigidimarina NCIMB 400 phosphate transporter YP_749265.1 655742 D 318167 CDS YP_749266.1 114561753 4278508 657151..657732 1 NC_008345.1 PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: son:SO3772 SH3 domain protein; SH3 type 3 domain-containing protein 657732 4278508 Sfri_0567 Shewanella frigidimarina NCIMB 400 SH3 type 3 domain-containing protein YP_749266.1 657151 D 318167 CDS YP_749267.1 114561754 4278509 658135..661329 1 NC_008345.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 661329 4278509 Sfri_0568 Shewanella frigidimarina NCIMB 400 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_749267.1 658135 D 318167 CDS YP_749268.1 114561755 4278510 complement(661394..661678) 1 NC_008345.1 KEGG: vpa:VPA0120 hypothetical protein; hypothetical protein 661678 4278510 Sfri_0569 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749268.1 661394 R 318167 CDS YP_749269.1 114561756 4278511 662046..663389 1 NC_008345.1 PFAM: Na+/H+ antiporter NhaC; KEGG: son:SO1087 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC 663389 4278511 Sfri_0570 Shewanella frigidimarina NCIMB 400 Na+/H+ antiporter NhaC YP_749269.1 662046 D 318167 CDS YP_749270.1 114561757 4278512 663678..664322 1 NC_008345.1 KEGG: son:SO1086 hypothetical protein; hypothetical protein 664322 4278512 Sfri_0571 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749270.1 663678 D 318167 CDS YP_749271.1 114561758 4278513 664353..665069 1 NC_008345.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pha:PSHAa0085 ribosomal RNA pseudouridylate synthase; pseudouridine synthase, Rsu 665069 4278513 Sfri_0572 Shewanella frigidimarina NCIMB 400 pseudouridine synthase, Rsu YP_749271.1 664353 D 318167 CDS YP_749272.1 114561759 4278514 complement(665073..667229) 1 NC_008345.1 KEGG: son:SO1075 hypothetical protein; hypothetical protein 667229 4278514 Sfri_0573 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749272.1 665073 R 318167 CDS YP_749273.1 114561760 4278515 complement(667445..668647) 1 NC_008345.1 PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: son:SO1074 tyrosine-specific transport protein, putative; aromatic amino acid permease 668647 4278515 Sfri_0574 Shewanella frigidimarina NCIMB 400 aromatic amino acid permease YP_749273.1 667445 R 318167 CDS YP_749274.1 114561761 4278516 669112..669666 1 NC_008345.1 PFAM: protein of unknown function UPF0016; KEGG: son:SO1071 hypothetical protein; hypothetical protein 669666 4278516 Sfri_0575 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749274.1 669112 D 318167 CDS YP_749275.1 114561762 4278517 669871..670251 1 NC_008345.1 KEGG: pha:PSHAb0212 hypothetical protein; hypothetical protein 670251 4278517 Sfri_0576 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749275.1 669871 D 318167 CDS YP_749276.1 114561763 4278518 complement(670352..670546) 1 NC_008345.1 KEGG: son:SO0974 hypothetical protein; hypothetical protein 670546 4278518 Sfri_0577 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749276.1 670352 R 318167 CDS YP_749277.1 114561764 4278519 670709..671200 1 NC_008345.1 PFAM: regulatory protein, MarR; KEGG: son:SO0977 transcriptional regulator, MarR family; transcriptional regulator, MarR family protein 671200 4278519 Sfri_0578 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MarR family protein YP_749277.1 670709 D 318167 CDS YP_749278.1 114561765 4278520 671190..672323 1 NC_008345.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 672323 rumB 4278520 rumB Shewanella frigidimarina NCIMB 400 23S rRNA methyluridine methyltransferase YP_749278.1 671190 D 318167 CDS YP_749279.1 114561766 4278749 672503..673654 1 NC_008345.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: son:SO0986 chromate transporter, putative; chromate transporter, chromate ion transporter (CHR) family protein 673654 4278749 Sfri_0580 Shewanella frigidimarina NCIMB 400 chromate transporter, chromate ion transporter (CHR) family protein YP_749279.1 672503 D 318167 CDS YP_749280.1 114561767 4278750 673789..675453 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: son:SO0987 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 675453 4278750 Sfri_0581 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_749280.1 673789 D 318167 CDS YP_749281.1 114561768 4278751 676080..677042 1 NC_008345.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: cps:CPS_4083 peptide chain release factor 2, programmed frameshift; peptide chain release factor 2 677042 4278751 Sfri_0582 Shewanella frigidimarina NCIMB 400 peptide chain release factor 2 YP_749281.1 676080 D 318167 CDS YP_749282.1 114561769 4278752 677097..678599 1 NC_008345.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 678599 lysS 4278752 lysS Shewanella frigidimarina NCIMB 400 lysyl-tRNA synthetase YP_749282.1 677097 D 318167 CDS YP_749283.1 114561770 4278753 complement(678722..679150) 1 NC_008345.1 PFAM: thioesterase superfamily protein; KEGG: vpa:VPA0775 hypothetical protein; thioesterase superfamily protein 679150 4278753 Sfri_0584 Shewanella frigidimarina NCIMB 400 thioesterase superfamily protein YP_749283.1 678722 R 318167 CDS YP_749284.1 114561771 4278754 complement(679193..680902) 1 NC_008345.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: vch:VCA0644 NADH oxidase, putative; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 680902 4278754 Sfri_0585 Shewanella frigidimarina NCIMB 400 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_749284.1 679193 R 318167 CDS YP_749285.1 114561772 4278755 complement(680946..681386) 1 NC_008345.1 PFAM: ferric-uptake regulator; KEGG: aci:ACIAD0910 negative regulator of ferric iron uptake; Fur family ferric uptake regulator 681386 4278755 Sfri_0586 Shewanella frigidimarina NCIMB 400 Fur family ferric uptake regulator YP_749285.1 680946 R 318167 CDS YP_749286.1 114561773 4278756 complement(681432..681713) 1 NC_008345.1 PFAM: protein of unknown function DUF134; KEGG: ppr:PBPRB1238 putative DNA-binding protein; hypothetical protein 681713 4278756 Sfri_0587 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749286.1 681432 R 318167 CDS YP_749287.1 114561774 4278757 complement(682064..683005) 1 NC_008345.1 SMART: WD-40 repeat protein; KEGG: cps:CPS_0436 hypothetical protein; WD-40 repeat-containing protein 683005 4278757 Sfri_0588 Shewanella frigidimarina NCIMB 400 WD-40 repeat-containing protein YP_749287.1 682064 R 318167 CDS YP_749288.1 114561775 4278758 683288..684325 1 NC_008345.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 684325 4278758 Sfri_0589 Shewanella frigidimarina NCIMB 400 dihydroorotase YP_749288.1 683288 D 318167 CDS YP_749289.1 114561776 4278759 complement(684488..687922) 1 NC_008345.1 KEGG: cps:CPS_1933 sensory box/GGDEF/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 687922 4278759 Sfri_0590 Shewanella frigidimarina NCIMB 400 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_749289.1 684488 R 318167 CDS YP_749290.1 114561777 4278760 688460..688972 1 NC_008345.1 KEGG: son:SO4593 hypothetical protein; hypothetical protein 688972 4278760 Sfri_0591 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749290.1 688460 D 318167 CDS YP_749291.1 114561778 4278761 689813..691402 1 NC_008345.1 PFAM: peptidase S41; KEGG: pha:PSHAa0289 hypothetical protein; peptidase S41 691402 4278761 Sfri_0592 Shewanella frigidimarina NCIMB 400 peptidase S41 YP_749291.1 689813 D 318167 CDS YP_749292.1 114561779 4278762 691402..691794 1 NC_008345.1 KEGG: pha:PSHAa0288 hypothetical protein; hypothetical protein 691794 4278762 Sfri_0593 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749292.1 691402 D 318167 CDS YP_749293.1 114561780 4278763 complement(692154..693593) 1 NC_008345.1 PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_04311 outer membrane protein and related peptidoglycan-associated (LipO)protein; OmpA/MotB domain-containing protein 693593 4278763 Sfri_0594 Shewanella frigidimarina NCIMB 400 OmpA/MotB domain-containing protein YP_749293.1 692154 R 318167 CDS YP_749294.1 114561781 4278764 694584..695222 1 NC_008345.1 PFAM: protein of unknown function UPF0126; KEGG: son:SO3342 hypothetical protein; hypothetical protein 695222 4278764 Sfri_0596 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749294.1 694584 D 318167 CDS YP_749295.1 114561782 4278765 695198..696073 1 NC_008345.1 hypothetical protein 696073 4278765 Sfri_0597 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749295.1 695198 D 318167 CDS YP_749296.1 114561783 4278766 696159..696665 1 NC_008345.1 hypothetical protein 696665 4278766 Sfri_0598 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749296.1 696159 D 318167 CDS YP_749297.1 114561784 4278521 696822..698060 1 NC_008345.1 hypothetical protein 698060 4278521 Sfri_0599 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749297.1 696822 D 318167 CDS YP_749298.1 114561785 4278522 698123..698731 1 NC_008345.1 hypothetical protein 698731 4278522 Sfri_0600 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749298.1 698123 D 318167 CDS YP_749299.1 114561786 4278523 complement(699056..700873) 1 NC_008345.1 KEGG: ilo:IL0291 hypothetical protein; hypothetical protein 700873 4278523 Sfri_0601 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749299.1 699056 R 318167 CDS YP_749300.1 114561787 4278524 complement(701022..701654) 1 NC_008345.1 PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: vpa:VPA1447 putative transcriptional regulator, LuxR family; transcriptional regulator, LuxR family protein 701654 4278524 Sfri_0602 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LuxR family protein YP_749300.1 701022 R 318167 CDS YP_749301.1 114561788 4278525 complement(701982..702863) 1 NC_008345.1 catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 702863 4278525 Sfri_0603 Shewanella frigidimarina NCIMB 400 23S rRNA pseudouridine synthase F YP_749301.1 701982 R 318167 CDS YP_749302.1 114561789 4278526 complement(703004..703909) 1 NC_008345.1 PFAM: protein of unknown function DUF72; KEGG: ppr:PBPRA1111 hypothetical protein; hypothetical protein 703909 4278526 Sfri_0604 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749302.1 703004 R 318167 CDS YP_749303.1 114561790 4278527 704130..707177 1 NC_008345.1 KEGG: pfo:Pfl_4564 hypothetical protein; hypothetical protein 707177 4278527 Sfri_0605 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749303.1 704130 D 318167 CDS YP_749304.1 114561791 4278528 complement(707260..707700) 1 NC_008345.1 KEGG: ilo:IL0121 hypothetical protein; hypothetical protein 707700 4278528 Sfri_0606 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749304.1 707260 R 318167 CDS YP_749305.1 114561792 4278529 707974..708498 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1049 acetyltransferase, GNAT family; N-acetyltransferase GCN5 708498 4278529 Sfri_0607 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_749305.1 707974 D 318167 CDS YP_749306.1 114561793 4278530 708988..710253 1 NC_008345.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO3388 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 710253 4278530 Sfri_0608 Shewanella frigidimarina NCIMB 400 DEAD/DEAH box helicase YP_749306.1 708988 D 318167 CDS YP_749307.1 114561794 4278531 710427..712487 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF839; KEGG: son:SO2385 hypothetical protein; twin-arginine translocation pathway signal 712487 4278531 Sfri_0609 Shewanella frigidimarina NCIMB 400 twin-arginine translocation pathway signal YP_749307.1 710427 D 318167 CDS YP_749308.1 114561795 4278532 712641..713027 1 NC_008345.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vch:VCA0890 glyoxylase I family protein; glyoxalase/bleomycin resistance protein/dioxygenase 713027 4278532 Sfri_0610 Shewanella frigidimarina NCIMB 400 glyoxalase/bleomycin resistance protein/dioxygenase YP_749308.1 712641 D 318167 CDS YP_749309.1 114561796 4278533 713278..715599 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpa:RPA3480 putative outer membrane receptor for iron transport; TonB-dependent receptor 715599 4278533 Sfri_0611 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor YP_749309.1 713278 D 318167 CDS YP_749310.1 114561797 4278534 715614..716294 1 NC_008345.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: aci:ACIAD0531 putative hydroxylase; 2OG-Fe(II) oxygenase 716294 4278534 Sfri_0612 Shewanella frigidimarina NCIMB 400 2OG-Fe(II) oxygenase YP_749310.1 715614 D 318167 CDS YP_749311.1 114561798 4278535 complement(716455..717396) 1 NC_008345.1 PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4568 formate-dependent nitrite reductase, nrfD protein; polysulfide reductase NrfD 717396 4278535 Sfri_0613 Shewanella frigidimarina NCIMB 400 polysulfide reductase NrfD YP_749311.1 716455 R 318167 CDS YP_749312.1 114561799 4278536 complement(717393..718079) 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: vfi:VF1552 thiosulfate reductase electron transport subunit; twin-arginine translocation pathway signal 718079 4278536 Sfri_0614 Shewanella frigidimarina NCIMB 400 twin-arginine translocation pathway signal YP_749312.1 717393 R 318167 CDS YP_749313.1 114561800 4278537 complement(718086..718550) 1 NC_008345.1 KEGG: eca:ECA1876 cytochrome C-type protein; hypothetical protein 718550 4278537 Sfri_0615 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749313.1 718086 R 318167 CDS YP_749314.1 114561801 4278416 complement(718626..719090) 1 NC_008345.1 hypothetical protein 719090 4278416 Sfri_0616 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749314.1 718626 R 318167 CDS YP_749315.1 114561802 4278417 719609..720568 1 NC_008345.1 PFAM: regulatory protein, LysR; KEGG: son:SO4571 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 720568 4278417 Sfri_0617 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_749315.1 719609 D 318167 CDS YP_749316.1 114561803 4278418 complement(721380..722360) 1 NC_008345.1 PFAM: Mg2 transporter protein, CorA family protein; KEGG: son:SO3984 magnesium transporter, putative; Mg2 transporter protein, CorA family protein 722360 4278418 Sfri_0618 Shewanella frigidimarina NCIMB 400 Mg2 transporter protein, CorA family protein YP_749316.1 721380 R 318167 CDS YP_749317.1 114561804 4278419 722546..722917 1 NC_008345.1 PFAM: Uncharacterised conserved protein UCP006287; KEGG: son:SO3983 hypothetical protein; hypothetical protein 722917 4278419 Sfri_0619 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749317.1 722546 D 318167 CDS YP_749318.1 114561805 4278420 complement(723008..723637) 1 NC_008345.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: son:SO3982 DNA-binding nitrate/nitrite response regulator; two component transcriptional regulator, LuxR family protein 723637 4278420 Sfri_0620 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, LuxR family protein YP_749318.1 723008 R 318167 CDS YP_749319.1 114561806 4278421 complement(723630..725345) 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: son:SO3981 nitrate/nitrite sensor protein NarQ; nitrate/nitrite sensor protein NarQ 725345 4278421 Sfri_0621 Shewanella frigidimarina NCIMB 400 nitrate/nitrite sensor protein NarQ YP_749319.1 723630 R 318167 CDS YP_749320.1 114561807 4278422 725629..727020 1 NC_008345.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 727020 nrfA 4278422 nrfA Shewanella frigidimarina NCIMB 400 cytochrome c552 YP_749320.1 725629 D 318167 CDS YP_749321.1 114561808 4278423 727357..727695 1 NC_008345.1 PFAM: nitrogen regulatory protein P-II; KEGG: son:SO0761 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II 727695 4278423 Sfri_0623 Shewanella frigidimarina NCIMB 400 nitrogen regulatory protein P-II YP_749321.1 727357 D 318167 CDS YP_749322.1 114561809 4278424 727706..728956 1 NC_008345.1 PFAM: Rh family protein/ammonium transporter; KEGG: son:SO0760 ammonium transporter; Rh family protein/ammonium transporter 728956 4278424 Sfri_0624 Shewanella frigidimarina NCIMB 400 Rh family protein/ammonium transporter YP_749322.1 727706 D 318167 CDS YP_749323.1 114561810 4278425 729144..729437 1 NC_008345.1 KEGG: son:SO0758 hypothetical protein; hypothetical protein 729437 4278425 Sfri_0625 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749323.1 729144 D 318167 CDS YP_749324.1 114561811 4278426 729535..730755 1 NC_008345.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0757 TPR domain protein; TPR repeat-containing protein 730755 4278426 Sfri_0626 Shewanella frigidimarina NCIMB 400 TPR repeat-containing protein YP_749324.1 729535 D 318167 CDS YP_749325.1 114561812 4278427 complement(730761..731603) 1 NC_008345.1 KEGG: mag:amb0186 ABC-type amino acid transport/signal transduction systems; ABC-type amino acid transport/signal transduction systems 731603 4278427 Sfri_0627 Shewanella frigidimarina NCIMB 400 ABC-type amino acid transport/signal transduction systems YP_749325.1 730761 R 318167 CDS YP_749326.1 114561813 4278428 732034..733089 1 NC_008345.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 733089 4278428 Sfri_0628 Shewanella frigidimarina NCIMB 400 phospho-2-dehydro-3-deoxyheptonate aldolase YP_749326.1 732034 D 318167 CDS YP_749327.1 114561814 4278429 complement(733134..733310) 1 NC_008345.1 KEGG: son:SO0755 hypothetical protein; hypothetical protein 733310 4278429 Sfri_0629 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749327.1 733134 R 318167 CDS YP_749328.1 114561815 4278430 733662..735455 1 NC_008345.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0754 ABC transporter, ATP-binding protein; ABC transporter 735455 4278430 Sfri_0630 Shewanella frigidimarina NCIMB 400 ABC transporter YP_749328.1 733662 D 318167 CDS YP_749329.1 114561816 4278431 735739..735957 1 NC_008345.1 KEGG: son:SO0753 hypothetical protein; hypothetical protein 735957 4278431 Sfri_0631 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749329.1 735739 D 318167 CDS YP_749330.1 114561817 4278432 complement(736192..736383) 1 NC_008345.1 KEGG: son:SO0752 hypothetical protein; hypothetical protein 736383 4278432 Sfri_0632 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749330.1 736192 R 318167 CDS YP_749331.1 114561818 4278433 complement(736532..738019) 1 NC_008345.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: son:SO0750 glutamate synthase, putative; ferredoxin-dependent glutamate synthase 738019 4278433 Sfri_0633 Shewanella frigidimarina NCIMB 400 ferredoxin-dependent glutamate synthase YP_749331.1 736532 R 318167 CDS YP_749332.1 114561819 4278590 738226..738843 1 NC_008345.1 KEGG: son:SO0748 hypothetical protein; hypothetical protein 738843 4278590 Sfri_0634 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749332.1 738226 D 318167 CDS YP_749333.1 114561820 4278591 738987..739736 1 NC_008345.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO0747 ferredoxin--NADP reductase; oxidoreductase FAD/NAD(P)-binding subunit 739736 4278591 Sfri_0635 Shewanella frigidimarina NCIMB 400 oxidoreductase FAD/NAD(P)-binding subunit YP_749333.1 738987 D 318167 CDS YP_749334.1 114561821 4278592 739953..740960 1 NC_008345.1 PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO0744 iron(III) ABC transporter, periplasmic iron(III)-binding protein; extracellular solute-binding protein 740960 4278592 Sfri_0636 Shewanella frigidimarina NCIMB 400 extracellular solute-binding protein YP_749334.1 739953 D 318167 CDS YP_749335.1 114561822 4278593 741047..742678 1 NC_008345.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO0743 iron(III) ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 742678 4278593 Sfri_0637 Shewanella frigidimarina NCIMB 400 binding-protein-dependent transport system inner membrane protein YP_749335.1 741047 D 318167 CDS YP_749336.1 114561823 4278594 742681..743712 1 NC_008345.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: son:SO0742 iron(III) ABC transporter, ATP-binding protein; ABC transporter 743712 4278594 Sfri_0638 Shewanella frigidimarina NCIMB 400 ABC transporter YP_749336.1 742681 D 318167 CDS YP_749337.1 114561824 4278595 744074..745012 1 NC_008345.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: son:SO0740 melanin biosynthesis protein TyrA, putative; Dyp-type peroxidase family protein 745012 4278595 Sfri_0639 Shewanella frigidimarina NCIMB 400 Dyp-type peroxidase family protein YP_749337.1 744074 D 318167 CDS YP_749338.1 114561825 4278596 complement(745075..745545) 1 NC_008345.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 745545 4278596 Sfri_0640 Shewanella frigidimarina NCIMB 400 arginine repressor YP_749338.1 745075 R 318167 CDS YP_749339.1 114561826 4278597 complement(745712..746137) 1 NC_008345.1 PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: son:SO0923 hypothetical protein; hypothetical protein 746137 4278597 Sfri_0641 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749339.1 745712 R 318167 CDS YP_749340.1 114561827 4278598 746260..746478 1 NC_008345.1 KEGG: son:SO0924 hypothetical protein; hypothetical protein 746478 4278598 Sfri_0642 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749340.1 746260 D 318167 CDS YP_749341.1 114561828 4278599 746482..747030 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0926 acetyltransferase, GNAT family; N-acetyltransferase GCN5 747030 4278599 Sfri_0643 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_749341.1 746482 D 318167 CDS YP_749342.1 114561829 4278600 747077..747433 1 NC_008345.1 KEGG: son:SO0927 hypothetical protein; hypothetical protein 747433 4278600 Sfri_0644 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749342.1 747077 D 318167 CDS YP_749343.1 114561830 4278601 complement(747584..748174) 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vch:VC0317 hypothetical protein; N-acetyltransferase GCN5 748174 4278601 Sfri_0645 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_749343.1 747584 R 318167 CDS YP_749344.1 114561831 4278602 complement(748322..749473) 1 NC_008345.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 749473 4278602 Sfri_0646 Shewanella frigidimarina NCIMB 400 S-adenosylmethionine synthetase YP_749344.1 748322 R 318167 CDS YP_749345.1 114561832 4278603 749965..752007 1 NC_008345.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 752007 4278603 Sfri_0647 Shewanella frigidimarina NCIMB 400 transketolase YP_749345.1 749965 D 318167 CDS YP_749346.1 114561833 4278604 752197..753216 1 NC_008345.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 753216 4278604 Sfri_0648 Shewanella frigidimarina NCIMB 400 erythrose 4-phosphate dehydrogenase YP_749346.1 752197 D 318167 CDS YP_749347.1 114561834 4278605 753293..754468 1 NC_008345.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 754468 pgk 4278605 pgk Shewanella frigidimarina NCIMB 400 phosphoglycerate kinase YP_749347.1 753293 D 318167 CDS YP_749348.1 114561835 4278606 754624..755688 1 NC_008345.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 755688 4278606 Sfri_0650 Shewanella frigidimarina NCIMB 400 fructose-1,6-bisphosphate aldolase YP_749348.1 754624 D 318167 CDS YP_749349.1 114561836 4278172 755881..757221 1 NC_008345.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: plu:plu0798 hypothetical protein; MATE efflux family protein 757221 4278172 Sfri_0651 Shewanella frigidimarina NCIMB 400 MATE efflux family protein YP_749349.1 755881 D 318167 CDS YP_749350.1 114561837 4278173 757337..758077 1 NC_008345.1 PFAM: protein of unknown function DUF481; KEGG: son:SO0934 hypothetical protein; hypothetical protein 758077 4278173 Sfri_0652 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749350.1 757337 D 318167 CDS YP_749351.1 114561838 4278174 758599..759345 1 NC_008345.1 KEGG: son:SO0940 transcriptional regulator-related protein; hypothetical protein 759345 4278174 Sfri_0653 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749351.1 758599 D 318167 CDS YP_749352.1 114561839 4278175 759362..759913 1 NC_008345.1 hypothetical protein 759913 4278175 Sfri_0654 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749352.1 759362 D 318167 CDS YP_749353.1 114561840 4278176 760003..761445 1 NC_008345.1 KEGG: son:SO0942 hypothetical protein; hypothetical protein 761445 4278176 Sfri_0655 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749353.1 760003 D 318167 CDS YP_749354.1 114561841 4278177 complement(761606..763855) 1 NC_008345.1 KEGG: son:SO0943 sensory box protein, putative; sensory box protein 763855 4278177 Sfri_0656 Shewanella frigidimarina NCIMB 400 sensory box protein YP_749354.1 761606 R 318167 CDS YP_749355.1 114561842 4278178 complement(763946..764578) 1 NC_008345.1 PFAM: Radical SAM domain protein; KEGG: son:SO0944 hypothetical protein; radical SAM domain-containing protein 764578 4278178 Sfri_0657 Shewanella frigidimarina NCIMB 400 radical SAM domain-containing protein YP_749355.1 763946 R 318167 CDS YP_749356.1 114561843 4278179 complement(764724..767876) 1 NC_008345.1 PFAM: acriflavin resistance protein; KEGG: son:SO0945 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 767876 4278179 Sfri_0658 Shewanella frigidimarina NCIMB 400 acriflavin resistance protein YP_749356.1 764724 R 318167 CDS YP_749357.1 114561844 4278180 complement(767879..769078) 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO0946 hypothetical protein; RND family efflux transporter MFP subunit 769078 4278180 Sfri_0659 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_749357.1 767879 R 318167 CDS YP_749358.1 114561845 4278181 complement(769532..770752) 1 NC_008345.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 770752 4278181 Sfri_0660 Shewanella frigidimarina NCIMB 400 ATP-dependent RNA helicase SrmB YP_749358.1 769532 R 318167 CDS YP_749359.1 114561846 4278182 complement(770806..771561) 1 NC_008345.1 PFAM: methyltransferase small; KEGG: son:SO0948 hypothetical protein; methyltransferase small 771561 4278182 Sfri_0661 Shewanella frigidimarina NCIMB 400 methyltransferase small YP_749359.1 770806 R 318167 CDS YP_749360.1 114561847 4278183 772058..773374 1 NC_008345.1 PFAM: branched-chain amino acid transport system II carrier protein; KEGG: son:SO0949 branched-chain amino acid transport system II carrier protein BrnQ; branched-chain amino acid transport system II carrier protein 773374 4278183 Sfri_0662 Shewanella frigidimarina NCIMB 400 branched-chain amino acid transport system II carrier protein YP_749360.1 772058 D 318167 CDS YP_749361.1 114561848 4278184 773452..774369 1 NC_008345.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO0950 integrase/recombinase XerD; tyrosine recombinase XerD 774369 4278184 Sfri_0663 Shewanella frigidimarina NCIMB 400 tyrosine recombinase XerD YP_749361.1 773452 D 318167 CDS YP_749362.1 114561849 4278185 774487..775242 1 NC_008345.1 KEGG: son:SO0951 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 775242 4278185 Sfri_0664 Shewanella frigidimarina NCIMB 400 thiol:disulfide interchange protein DsbC YP_749362.1 774487 D 318167 CDS YP_749363.1 114561850 4278186 775358..777082 1 NC_008345.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: son:SO0952 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 777082 4278186 Sfri_0665 Shewanella frigidimarina NCIMB 400 single-stranded-DNA-specific exonuclease RecJ YP_749363.1 775358 D 318167 CDS YP_749364.1 114561851 4278187 complement(777913..778674) 1 NC_008345.1 KEGG: son:SO3580 putative lipoprotein; putative lipoprotein 778674 4278187 Sfri_0666 Shewanella frigidimarina NCIMB 400 putative lipoprotein YP_749364.1 777913 R 318167 CDS YP_749365.1 114561852 4278188 778798..779772 1 NC_008345.1 KEGG: pha:PSHAa0933 pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 779772 4278188 Sfri_0667 Shewanella frigidimarina NCIMB 400 RluA family pseudouridine synthase YP_749365.1 778798 D 318167 CDS YP_749366.1 114561853 4278189 779772..780500 1 NC_008345.1 PFAM: protein of unknown function DUF152; KEGG: son:SO3578 conserved hypothetical protein TIGR00726; hypothetical protein 780500 4278189 Sfri_0668 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749366.1 779772 D 318167 CDS YP_749367.1 114561854 4277211 780641..783238 1 NC_008345.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: son:SO3577 clpB protein; ATPase 783238 4277211 Sfri_0669 Shewanella frigidimarina NCIMB 400 ATPase YP_749367.1 780641 D 318167 CDS YP_749368.1 114561855 4277212 complement(783300..783743) 1 NC_008345.1 KEGG: son:SO3576 hypothetical protein; hypothetical protein 783743 4277212 Sfri_0670 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749368.1 783300 R 318167 CDS YP_749369.1 114561856 4277213 783843..784667 1 NC_008345.1 KEGG: son:SO3575 CDP-diacylglycerol--serine O-phosphatidyltransferase, putative; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 784667 4277213 Sfri_0671 Shewanella frigidimarina NCIMB 400 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_749369.1 783843 D 318167 CDS YP_749370.1 114561857 4277214 complement(791293..791826) 1 NC_008345.1 KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB 791826 4277214 Sfri_0672 Shewanella frigidimarina NCIMB 400 ISSod10, transposase OrfB YP_749370.1 791293 R 318167 CDS YP_749371.1 114561858 4277215 complement(791840..792319) 1 NC_008345.1 KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA 792319 4277215 Sfri_0673 Shewanella frigidimarina NCIMB 400 ISSod10, transposase OrfA YP_749371.1 791840 R 318167 CDS YP_749372.1 114561859 4277216 complement(798590..799123) 1 NC_008345.1 KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB 799123 4277216 Sfri_0674 Shewanella frigidimarina NCIMB 400 ISSod10, transposase OrfB YP_749372.1 798590 R 318167 CDS YP_749373.1 114561860 4277217 complement(799137..799616) 1 NC_008345.1 KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA 799616 4277217 Sfri_0675 Shewanella frigidimarina NCIMB 400 ISSod10, transposase OrfA YP_749373.1 799137 R 318167 CDS YP_749374.1 114561861 4277218 complement(801030..802082) 1 NC_008345.1 PFAM: porin, Gram-negative type; KEGG: cps:CPS_3847 porin; porin 802082 4277218 Sfri_0677 Shewanella frigidimarina NCIMB 400 porin YP_749374.1 801030 R 318167 CDS YP_749375.1 114561862 4277219 complement(802323..803048) 1 NC_008345.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 803048 frdB 4277219 frdB Shewanella frigidimarina NCIMB 400 fumarate reductase iron-sulfur subunit YP_749375.1 802323 R 318167 CDS YP_749376.1 114561863 4277220 complement(803045..805054) 1 NC_008345.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 805054 4277220 Sfri_0679 Shewanella frigidimarina NCIMB 400 fumarate reductase flavoprotein subunit YP_749376.1 803045 R 318167 CDS YP_749377.1 114561864 4277221 complement(805258..805983) 1 NC_008345.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 805983 4277221 Sfri_0680 Shewanella frigidimarina NCIMB 400 fumarate reductase cytochrome b-556 subunit YP_749377.1 805258 R 318167 CDS YP_749378.1 114561865 4277222 complement(806121..807368) 1 NC_008345.1 TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter; KEGG: vfi:VF2354 anaerobic C4-dicarboxylate transporter; anaerobic c4-dicarboxylate antiporter 807368 4277222 Sfri_0681 Shewanella frigidimarina NCIMB 400 anaerobic c4-dicarboxylate antiporter YP_749378.1 806121 R 318167 CDS YP_749379.1 114561866 4277223 complement(807535..808977) 1 NC_008345.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 808977 aspA 4277223 aspA Shewanella frigidimarina NCIMB 400 aspartate ammonia-lyase YP_749379.1 807535 R 318167 CDS YP_749380.1 114561867 4277224 809484..810434 1 NC_008345.1 KEGG: vpa:VPA0374 periplasmic L-asparaginase II; TIGRFAM: L-asparaginases, type II; PFAM: Asparaginase/glutaminase; L-asparaginases, type II 810434 4277224 Sfri_0683 Shewanella frigidimarina NCIMB 400 L-asparaginases, type II YP_749380.1 809484 D 318167 CDS YP_749381.1 114561868 4277225 810479..810790 1 NC_008345.1 PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 810790 4277225 Sfri_0684 Shewanella frigidimarina NCIMB 400 transposase IS3/IS911 family protein YP_749381.1 810479 D 318167 CDS YP_749382.1 114561869 4277226 810844..811656 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 811656 4277226 Sfri_0685 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_749382.1 810844 D 318167 CDS YP_749383.1 114561870 4277227 complement(812668..814029) 1 NC_008345.1 KEGG: vpa:VP1880 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 814029 4277227 Sfri_0687 Shewanella frigidimarina NCIMB 400 L-serine dehydratase 1 YP_749383.1 812668 R 318167 CDS YP_749384.1 114561871 4278731 complement(814097..815356) 1 NC_008345.1 PFAM: aromatic amino acid permease; KEGG: vpa:VP1879 serine transporter; aromatic amino acid permease 815356 4278731 Sfri_0688 Shewanella frigidimarina NCIMB 400 aromatic amino acid permease YP_749384.1 814097 R 318167 CDS YP_749385.1 114561872 4278732 complement(815553..816230) 1 NC_008345.1 PFAM: YheO domain protein; KEGG: vvy:VV1021 hypothetical protein; YheO domain-containing protein 816230 4278732 Sfri_0689 Shewanella frigidimarina NCIMB 400 YheO domain-containing protein YP_749385.1 815553 R 318167 CDS YP_749386.1 114561873 4278733 816774..817148 1 NC_008345.1 KEGG: son:SO1159 hypothetical protein; hypothetical protein 817148 4278733 Sfri_0690 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749386.1 816774 D 318167 CDS YP_749387.1 114561874 4278734 817135..817593 1 NC_008345.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: son:SO1160 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 817593 4278734 Sfri_0691 Shewanella frigidimarina NCIMB 400 ribosomal-protein-alanine acetyltransferase YP_749387.1 817135 D 318167 CDS YP_749388.1 114561875 4278735 complement(817670..818635) 1 NC_008345.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 818635 4278735 Sfri_0692 Shewanella frigidimarina NCIMB 400 lipoyl synthase YP_749388.1 817670 R 318167 CDS YP_749389.1 114561876 4278736 complement(818635..819285) 1 NC_008345.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 819285 lipB 4278736 lipB Shewanella frigidimarina NCIMB 400 lipoate-protein ligase B YP_749389.1 818635 R 318167 CDS YP_749390.1 114561877 4278737 complement(819389..819655) 1 NC_008345.1 PFAM: protein of unknown function DUF493; KEGG: son:SO1163 hypothetical protein; hypothetical protein 819655 4278737 Sfri_0694 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749390.1 819389 R 318167 CDS YP_749391.1 114561878 4278738 complement(819811..821022) 1 NC_008345.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: son:SO1164 D-alanyl-D-alanine carboxypeptidase; Serine-type D-Ala-D-Ala carboxypeptidase 821022 4278738 Sfri_0695 Shewanella frigidimarina NCIMB 400 Serine-type D-Ala-D-Ala carboxypeptidase YP_749391.1 819811 R 318167 CDS YP_749392.1 114561879 4278739 complement(821176..821988) 1 NC_008345.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: son:SO1165 rare lipoprotein A; rare lipoprotein A 821988 4278739 Sfri_0696 Shewanella frigidimarina NCIMB 400 rare lipoprotein A YP_749392.1 821176 R 318167 CDS YP_749393.1 114561880 4278740 complement(821978..822991) 1 NC_008345.1 TIGRFAM: lytic murein transglycosylase B; KEGG: son:SO1166 membrane-bound lytic transglycosylase, putative; lytic murein transglycosylase B 822991 4278740 Sfri_0697 Shewanella frigidimarina NCIMB 400 lytic murein transglycosylase B YP_749393.1 821978 R 318167 CDS YP_749394.1 114561881 4278741 complement(823006..824127) 1 NC_008345.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: son:SO1167 rod shape-determining protein RodA; rod shape-determining protein RodA 824127 4278741 Sfri_0698 Shewanella frigidimarina NCIMB 400 rod shape-determining protein RodA YP_749394.1 823006 R 318167 CDS YP_749395.1 114561882 4278742 complement(824109..825965) 1 NC_008345.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: son:SO1168 penicillin-binding protein 2; peptidoglycan glycosyltransferase 825965 4278742 Sfri_0699 Shewanella frigidimarina NCIMB 400 peptidoglycan glycosyltransferase YP_749395.1 824109 R 318167 CDS YP_749396.1 114561883 4278743 complement(826095..826565) 1 NC_008345.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 826565 4278743 Sfri_0700 Shewanella frigidimarina NCIMB 400 rRNA large subunit methyltransferase YP_749396.1 826095 R 318167 CDS YP_749397.1 114561884 4278744 complement(826565..826894) 1 NC_008345.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: son:SO1170 iojap domain protein; iojap family protein 826894 4278744 Sfri_0701 Shewanella frigidimarina NCIMB 400 iojap family protein YP_749397.1 826565 R 318167 CDS YP_749398.1 114561885 4278745 complement(827056..827691) 1 NC_008345.1 KEGG: son:SO1171 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 827691 4278745 Sfri_0702 Shewanella frigidimarina NCIMB 400 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_749398.1 827056 R 318167 CDS YP_749399.1 114561886 4278746 complement(827713..828747) 1 NC_008345.1 KEGG: son:SO1172 DNA polymerase III delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta 828747 4278746 Sfri_0703 Shewanella frigidimarina NCIMB 400 DNA polymerase III subunit delta YP_749399.1 827713 R 318167 CDS YP_749400.1 114561887 4278747 complement(828747..829256) 1 NC_008345.1 PFAM: Rare lipoprotein B; KEGG: son:SO1173 rare lipoprotein B; rare lipoprotein B 829256 4278747 Sfri_0704 Shewanella frigidimarina NCIMB 400 rare lipoprotein B YP_749400.1 828747 R 318167 CDS YP_749401.1 114561888 4278748 complement(829380..831998) 1 NC_008345.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 831998 leuS 4278748 leuS Shewanella frigidimarina NCIMB 400 leucyl-tRNA synthetase YP_749401.1 829380 R 318167 CDS YP_749402.1 114561889 4278348 832092..832592 1 NC_008345.1 PFAM: protein of unknown function DUF1451; KEGG: son:SO1175 hypothetical protein; hypothetical protein 832592 4278348 Sfri_0706 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749402.1 832092 D 318167 CDS YP_749403.1 114561890 4278349 complement(832609..832911) 1 NC_008345.1 hypothetical protein 832911 4278349 Sfri_0707 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749403.1 832609 R 318167 CDS YP_749404.1 114561891 4278350 complement(833012..833524) 1 NC_008345.1 PFAM: methylation site containing protein; KEGG: son:SO1176 hypothetical protein; methylation site containing protein 833524 4278350 Sfri_0708 Shewanella frigidimarina NCIMB 400 methylation site containing protein YP_749404.1 833012 R 318167 CDS YP_749405.1 114561892 4278351 complement(833537..835099) 1 NC_008345.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 835099 lnt 4278351 lnt Shewanella frigidimarina NCIMB 400 apolipoprotein N-acyltransferase YP_749405.1 833537 R 318167 CDS YP_749406.1 114561893 4278352 complement(835103..835981) 1 NC_008345.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: son:SO1178 magnesium and cobalt efflux protein CorC; hypothetical protein 835981 4278352 Sfri_0710 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749406.1 835103 R 318167 CDS YP_749407.1 114561894 4278353 complement(836027..836497) 1 NC_008345.1 PFAM: protein of unknown function UPF0054; KEGG: son:SO1179 conserved hypothetical protein TIGR00043; putative metalloprotease 836497 4278353 Sfri_0711 Shewanella frigidimarina NCIMB 400 putative metalloprotease YP_749407.1 836027 R 318167 CDS YP_749408.1 114561895 4278354 complement(836494..837537) 1 NC_008345.1 PFAM: PhoH family protein; KEGG: son:SO1180 PhoH family protein; PhoH family protein 837537 4278354 Sfri_0712 Shewanella frigidimarina NCIMB 400 PhoH family protein YP_749408.1 836494 R 318167 CDS YP_749409.1 114561896 4278355 complement(837730..839154) 1 NC_008345.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 839154 4278355 Sfri_0713 Shewanella frigidimarina NCIMB 400 (dimethylallyl)adenosine tRNA methylthiotransferase YP_749409.1 837730 R 318167 CDS YP_749410.1 114561897 4278356 complement(839238..839645) 1 NC_008345.1 hypothetical protein 839645 4278356 Sfri_0714 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749410.1 839238 R 318167 CDS YP_749411.1 114561898 4278357 839857..841095 1 NC_008345.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: son:SO1183 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; ubiquinone biosynthesis hydroxylase 841095 4278357 Sfri_0715 Shewanella frigidimarina NCIMB 400 ubiquinone biosynthesis hydroxylase YP_749411.1 839857 D 318167 CDS YP_749412.1 114561899 4278358 841314..841901 1 NC_008345.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 841901 4278358 Sfri_0716 Shewanella frigidimarina NCIMB 400 peptidyl-tRNA hydrolase YP_749412.1 841314 D 318167 CDS YP_749413.1 114561900 4278359 841979..843070 1 NC_008345.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 843070 4278359 Sfri_0717 Shewanella frigidimarina NCIMB 400 GTP-dependent nucleic acid-binding protein EngD YP_749413.1 841979 D 318167 CDS YP_749414.1 114561901 4278360 844392..845426 1 NC_008345.1 PFAM: Patatin; KEGG: pha:PSHAb0541 putative hydrolase similar to YjjU; patatin 845426 4278360 Sfri_0718 Shewanella frigidimarina NCIMB 400 patatin YP_749414.1 844392 D 318167 CDS YP_749415.1 114561902 4278361 complement(845685..846632) 1 NC_008345.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 846632 4278361 Sfri_0719 Shewanella frigidimarina NCIMB 400 ribose-phosphate pyrophosphokinase YP_749415.1 845685 R 318167 CDS YP_749416.1 114561903 4278362 complement(846723..847595) 1 NC_008345.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 847595 ipk 4278362 ipk Shewanella frigidimarina NCIMB 400 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_749416.1 846723 R 318167 CDS YP_749417.1 114561904 4278363 complement(847641..848252) 1 NC_008345.1 PFAM: outer membrane lipoprotein LolB; KEGG: son:SO3835 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 848252 4278363 Sfri_0721 Shewanella frigidimarina NCIMB 400 outer membrane lipoprotein LolB YP_749417.1 847641 R 318167 CDS YP_749418.1 114561905 4278364 848490..849740 1 NC_008345.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 849740 hemA 4278364 hemA Shewanella frigidimarina NCIMB 400 glutamyl-tRNA reductase YP_749418.1 848490 D 318167 CDS YP_749419.1 114561906 4277630 849755..850840 1 NC_008345.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 850840 prfA 4277630 prfA Shewanella frigidimarina NCIMB 400 peptide chain release factor 1 YP_749419.1 849755 D 318167 CDS YP_749420.1 114561907 4277631 850850..851704 1 NC_008345.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 12; KEGG: son:SO3832 hemK family protein; HemK family modification methylase 851704 4277631 Sfri_0724 Shewanella frigidimarina NCIMB 400 HemK family modification methylase YP_749420.1 850850 D 318167 CDS YP_749421.1 114561908 4277632 851829..852224 1 NC_008345.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: son:SO3830 hypothetical protein; invasion gene expression up-regulator, SirB 852224 4277632 Sfri_0725 Shewanella frigidimarina NCIMB 400 invasion gene expression up-regulator, SirB YP_749421.1 851829 D 318167 CDS YP_749422.1 114561909 4277633 852235..853023 1 NC_008345.1 KEGG: son:SO3829 hypothetical protein; hypothetical protein 853023 4277633 Sfri_0726 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749422.1 852235 D 318167 CDS YP_749423.1 114561910 4277634 853217..854464 1 NC_008345.1 PFAM: protein of unknown function DUF819; KEGG: son:SO3828 hypothetical protein; hypothetical protein 854464 4277634 Sfri_0727 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749423.1 853217 D 318167 CDS YP_749424.1 114561911 4277635 854482..855333 1 NC_008345.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 855333 4277635 Sfri_0728 Shewanella frigidimarina NCIMB 400 2-dehydro-3-deoxyphosphooctonate aldolase YP_749424.1 854482 D 318167 CDS YP_749425.1 114561912 4277636 855503..856375 1 NC_008345.1 KEGG: son:SO3822 hypothetical protein; hypothetical protein 856375 4277636 Sfri_0729 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749425.1 855503 D 318167 CDS YP_749426.1 114561913 4277637 complement(856470..857438) 1 NC_008345.1 KEGG: son:SO3817 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 857438 4277637 Sfri_0730 Shewanella frigidimarina NCIMB 400 2-dehydropantoate 2-reductase YP_749426.1 856470 R 318167 CDS YP_749427.1 114561914 4277638 complement(857445..857801) 1 NC_008345.1 PFAM: VanZ family protein; KEGG: son:SO3816 hypothetical protein; VanZ family protein 857801 4277638 Sfri_0731 Shewanella frigidimarina NCIMB 400 VanZ family protein YP_749427.1 857445 R 318167 CDS YP_749428.1 114561915 4277639 858140..858625 1 NC_008345.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 858625 4277639 Sfri_0732 Shewanella frigidimarina NCIMB 400 putative nucleotide-binding protein YP_749428.1 858140 D 318167 CDS YP_749429.1 114561916 4277640 859090..859476 1 NC_008345.1 KEGG: son:SO0792 hypothetical protein; hypothetical protein 859476 4277640 Sfri_0733 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749429.1 859090 D 318167 CDS YP_749430.1 114561917 4277641 complement(859821..860396) 1 NC_008345.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: vpa:VP0636 putative outer membrane protein A; OmpA domain-containing protein 860396 4277641 Sfri_0734 Shewanella frigidimarina NCIMB 400 OmpA domain-containing protein YP_749430.1 859821 R 318167 CDS YP_749431.1 114561918 4277642 861223..861435 1 NC_008345.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: ppr:PBPRB0036 putative Cold shock-like protein; cold-shock DNA-binding domain-containing protein 861435 4277642 Sfri_0735 Shewanella frigidimarina NCIMB 400 cold-shock DNA-binding domain-containing protein YP_749431.1 861223 D 318167 CDS YP_749432.1 114561919 4277643 861745..861975 1 NC_008345.1 KEGG: son:SO0793 hypothetical protein; hypothetical protein 861975 4277643 Sfri_0736 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749432.1 861745 D 318167 CDS YP_749433.1 114561920 4277644 862520..863536 1 NC_008345.1 KEGG: bbr:BB0920 hypothetical protein; hypothetical protein 863536 4277644 Sfri_0737 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749433.1 862520 D 318167 CDS YP_749434.1 114561921 4277645 864240..866426 1 NC_008345.1 TIGRFAM: uncharacterized domain; PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: cps:CPS_1756 hypothetical protein; hypothetical protein 866426 4277645 Sfri_0738 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749434.1 864240 D 318167 CDS YP_749435.1 114561922 4277646 complement(866514..868001) 1 NC_008345.1 KEGG: mhu:Mhun_2822 spore coat assembly protein-like; spore coat assembly protein-like protein 868001 4277646 Sfri_0739 Shewanella frigidimarina NCIMB 400 spore coat assembly protein-like protein YP_749435.1 866514 R 318167 CDS YP_749436.1 114561923 4277647 868349..869752 1 NC_008345.1 hypothetical protein 869752 4277647 Sfri_0740 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749436.1 868349 D 318167 CDS YP_749437.1 114561924 4278278 869889..870137 1 NC_008345.1 KEGG: ppr:PBPRB1083 hypothetical protein; hypothetical protein 870137 4278278 Sfri_0741 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749437.1 869889 D 318167 CDS YP_749438.1 114561925 4278279 complement(870214..871416) 1 NC_008345.1 PFAM: Rh family protein/ammonium transporter; KEGG: ppr:PBPRB0379 putative ammonium permease; Rh family protein/ammonium transporter 871416 4278279 Sfri_0742 Shewanella frigidimarina NCIMB 400 Rh family protein/ammonium transporter YP_749438.1 870214 R 318167 CDS YP_749439.1 114561926 4278280 871832..873001 1 NC_008345.1 KEGG: cps:CPS_0669 lipid-transfer protein; lipid-transfer protein 873001 4278280 Sfri_0743 Shewanella frigidimarina NCIMB 400 lipid-transfer protein YP_749439.1 871832 D 318167 CDS YP_749440.1 114561927 4278281 874696..875238 1 NC_008345.1 KEGG: par:Psyc_1394 hypothetical protein; hypothetical protein 875238 4278281 Sfri_0745 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749440.1 874696 D 318167 CDS YP_749441.1 114561928 4278282 875419..876066 1 NC_008345.1 PFAM: DSBA oxidoreductase; KEGG: pst:PSPTO4177 2-hydroxychromene-2-carboxylate isomerase family protein; DSBA oxidoreductase 876066 4278282 Sfri_0746 Shewanella frigidimarina NCIMB 400 DSBA oxidoreductase YP_749441.1 875419 D 318167 CDS YP_749442.1 114561929 4278283 complement(876116..878461) 1 NC_008345.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: eca:ECA1964 putative molybdopterin oxidoreductase; oxidoreductase alpha (molybdopterin) subunit 878461 4278283 Sfri_0747 Shewanella frigidimarina NCIMB 400 oxidoreductase alpha (molybdopterin) subunit YP_749442.1 876116 R 318167 CDS YP_749443.1 114561930 4278284 complement(878454..879269) 1 NC_008345.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; KEGG: pfo:Pfl_0280 formate dehydrogenase, subunit FdhD; formate dehydrogenase family accessory protein FdhD 879269 4278284 Sfri_0748 Shewanella frigidimarina NCIMB 400 formate dehydrogenase family accessory protein FdhD YP_749443.1 878454 R 318167 CDS YP_749444.1 114561931 4278285 879404..880303 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VPA0961 putative transcriptional regulator; transcriptional regulator, LysR family protein 880303 4278285 Sfri_0749 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_749444.1 879404 D 318167 CDS YP_749445.1 114561932 4278286 880644..880928 1 NC_008345.1 PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO1850 DnaJ domain protein; heat shock protein DnaJ domain-containing protein 880928 4278286 Sfri_0750 Shewanella frigidimarina NCIMB 400 heat shock protein DnaJ domain-containing protein YP_749445.1 880644 D 318167 CDS YP_749446.1 114561933 4278287 880936..881463 1 NC_008345.1 KEGG: son:SO1849 hypothetical protein; hypothetical protein 881463 4278287 Sfri_0751 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749446.1 880936 D 318167 CDS YP_749447.1 114561934 4278288 881460..882215 1 NC_008345.1 KEGG: son:SO1848 hypothetical protein; hypothetical protein 882215 4278288 Sfri_0752 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749447.1 881460 D 318167 CDS YP_749448.1 114561935 4278289 882227..883120 1 NC_008345.1 KEGG: son:SO1846 hypothetical protein; hypothetical protein 883120 4278289 Sfri_0753 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749448.1 882227 D 318167 CDS YP_749449.1 114561936 4278290 883550..883861 1 NC_008345.1 PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 883861 4278290 Sfri_0754 Shewanella frigidimarina NCIMB 400 transposase IS3/IS911 family protein YP_749449.1 883550 D 318167 CDS YP_749450.1 114561937 4278291 883915..884727 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 884727 4278291 Sfri_0755 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_749450.1 883915 D 318167 CDS YP_749451.1 114561938 4278292 884915..885307 1 NC_008345.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nwi:Nwi_1214 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 885307 4278292 Sfri_0756 Shewanella frigidimarina NCIMB 400 glyoxalase/bleomycin resistance protein/dioxygenase YP_749451.1 884915 D 318167 CDS YP_749452.1 114561939 4278293 885546..886775 1 NC_008345.1 PFAM: sodium:dicarboxylate symporter; KEGG: oih:OB1282 H(+):sodium-glutamate symporter; sodium:dicarboxylate symporter 886775 4278293 Sfri_0757 Shewanella frigidimarina NCIMB 400 sodium:dicarboxylate symporter YP_749452.1 885546 D 318167 CDS YP_749453.1 114561940 4278294 complement(886809..888023) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pha:PSHAa2647 conserved protein of unknown function with GGDEF domain; diguanylate cyclase 888023 4278294 Sfri_0758 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_749453.1 886809 R 318167 CDS YP_749454.1 114561941 4277927 888658..889206 1 NC_008345.1 PFAM: NUDIX hydrolase; KEGG: ppr:PBPRB0617 putative MutT/NUDIX family protein; NUDIX hydrolase 889206 4277927 Sfri_0760 Shewanella frigidimarina NCIMB 400 NUDIX hydrolase YP_749454.1 888658 D 318167 CDS YP_749455.1 114561942 4277928 complement(889308..890186) 1 NC_008345.1 KEGG: ppr:PBPRA3144 putative pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 890186 4277928 Sfri_0761 Shewanella frigidimarina NCIMB 400 pyrroline-5-carboxylate reductase YP_749455.1 889308 R 318167 CDS YP_749456.1 114561943 4277929 complement(890224..891471) 1 NC_008345.1 TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: pha:PSHAa0280 gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 891471 4277929 Sfri_0762 Shewanella frigidimarina NCIMB 400 gamma-glutamyl phosphate reductase YP_749456.1 890224 R 318167 CDS YP_749457.1 114561944 4277930 complement(891468..892574) 1 NC_008345.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 892574 4277930 Sfri_0763 Shewanella frigidimarina NCIMB 400 gamma-glutamyl kinase YP_749457.1 891468 R 318167 CDS YP_749458.1 114561945 4277931 complement(892589..894085) 1 NC_008345.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: cps:CPS_3463 proline/sodium symporter; sodium/proline symporter 894085 4277931 Sfri_0764 Shewanella frigidimarina NCIMB 400 sodium/proline symporter YP_749458.1 892589 R 318167 CDS YP_749459.1 114561946 4277932 895110..895778 1 NC_008345.1 PFAM: regulatory protein, TetR; KEGG: psb:Psyr_2754 regulatory protein, TetR; transcriptional regulator, TetR family protein 895778 4277932 Sfri_0765 Shewanella frigidimarina NCIMB 400 transcriptional regulator, TetR family protein YP_749459.1 895110 D 318167 CDS YP_749460.1 114561947 4277933 895826..896809 1 NC_008345.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: psb:Psyr_2753 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase 896809 4277933 Sfri_0766 Shewanella frigidimarina NCIMB 400 alcohol dehydrogenase YP_749460.1 895826 D 318167 CDS YP_749461.1 114561948 4277934 complement(897038..899083) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1500 sensory box protein; diguanylate cyclase/phosphodiesterase 899083 4277934 Sfri_0767 Shewanella frigidimarina NCIMB 400 diguanylate cyclase/phosphodiesterase YP_749461.1 897038 R 318167 CDS YP_749462.1 114561949 4277935 complement(899088..899618) 1 NC_008345.1 KEGG: gme:Gmet_1668 putative transmembrane protein; hypothetical protein 899618 4277935 Sfri_0768 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749462.1 899088 R 318167 CDS YP_749463.1 114561950 4277936 complement(899627..901690) 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug; TonB-dependent receptor, plug 901690 4277936 Sfri_0769 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor, plug YP_749463.1 899627 R 318167 CDS YP_749464.1 114561951 4277937 902012..902527 1 NC_008345.1 KEGG: ppr:PBPRB1424 hypothetical protein; hypothetical protein 902527 4277937 Sfri_0770 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749464.1 902012 D 318167 CDS YP_749465.1 114561952 4277938 902892..905474 1 NC_008345.1 PFAM: peptidase S45, penicillin amidase; KEGG: son:SO0918 aculeacin A acylase; peptidase S45, penicillin amidase 905474 4277938 Sfri_0771 Shewanella frigidimarina NCIMB 400 peptidase S45, penicillin amidase YP_749465.1 902892 D 318167 CDS YP_749466.1 114561953 4277939 906036..907505 1 NC_008345.1 PFAM: carbon starvation protein CstA; KEGG: pha:PSHAb0210 cold-shock regulated carbon starvation protein A; carbon starvation protein CstA 907505 4277939 Sfri_0772 Shewanella frigidimarina NCIMB 400 carbon starvation protein CstA YP_749466.1 906036 D 318167 CDS YP_749467.1 114561954 4277940 complement(907584..908798) 1 NC_008345.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4404 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 908798 4277940 Sfri_0773 Shewanella frigidimarina NCIMB 400 4Fe-4S ferredoxin YP_749467.1 907584 R 318167 CDS YP_749468.1 114561955 4277941 909042..910064 1 NC_008345.1 KEGG: son:SO1975 zinc carboxypeptidase-related protein; zinc carboxypeptidase-related protein 910064 4277941 Sfri_0774 Shewanella frigidimarina NCIMB 400 zinc carboxypeptidase-related protein YP_749468.1 909042 D 318167 CDS YP_749469.1 114561956 4277942 910084..910878 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO1976 hydrolase, alpha/beta fold family; alpha/beta hydrolase 910878 4277942 Sfri_0775 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase YP_749469.1 910084 D 318167 CDS YP_749470.1 114561957 4277943 complement(911065..911964) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vvy:VVA0252 transcriptional regulator; transcriptional regulator, LysR family protein 911964 4277943 Sfri_0776 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_749470.1 911065 R 318167 CDS YP_749471.1 114561958 4277944 complement(911993..913579) 1 NC_008345.1 PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: son:SO4169 hypothetical protein; deoxyribodipyrimidine photolyase-like protein 913579 4277944 Sfri_0777 Shewanella frigidimarina NCIMB 400 deoxyribodipyrimidine photolyase-like protein YP_749471.1 911993 R 318167 CDS YP_749472.1 114561959 4278696 complement(913591..913731) 1 NC_008345.1 KEGG: csa:Csal_0772 hypothetical protein; hypothetical protein 913731 4278696 Sfri_0778 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749472.1 913591 R 318167 CDS YP_749473.1 114561960 4278697 complement(913721..915235) 1 NC_008345.1 PFAM: DNA photolyase, FAD-binding; KEGG: pha:PSHAa2200 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase 915235 4278697 Sfri_0779 Shewanella frigidimarina NCIMB 400 deoxyribodipyrimidine photo-lyase YP_749473.1 913721 R 318167 CDS YP_749474.1 114561961 4278698 915440..916078 1 NC_008345.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: son:SO0768 putative NADH-flavin reductase; NAD-dependent epimerase/dehydratase 916078 4278698 Sfri_0780 Shewanella frigidimarina NCIMB 400 NAD-dependent epimerase/dehydratase YP_749474.1 915440 D 318167 CDS YP_749475.1 114561962 4278699 916928..918748 1 NC_008345.1 PFAM: KAP P-loop domain protein; KEGG: sar:SAR1897 hypothetical protein; KAP P-loop domain-containing protein 918748 4278699 Sfri_0781 Shewanella frigidimarina NCIMB 400 KAP P-loop domain-containing protein YP_749475.1 916928 D 318167 CDS YP_749476.1 114561963 4278700 complement(919350..920252) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VP2378 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 920252 4278700 Sfri_0783 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_749476.1 919350 R 318167 CDS YP_749477.1 114561964 4278701 920452..921420 1 NC_008345.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: vch:VC2323 hypothetical protein; C4-dicarboxylate transporter/malic acid transport protein 921420 4278701 Sfri_0784 Shewanella frigidimarina NCIMB 400 C4-dicarboxylate transporter/malic acid transport protein YP_749477.1 920452 D 318167 CDS YP_749478.1 114561965 4278702 921435..921908 1 NC_008345.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ilo:IL0308 hypothetical protein; ybaK/ebsC protein 921908 4278702 Sfri_0785 Shewanella frigidimarina NCIMB 400 ybaK/ebsC protein YP_749478.1 921435 D 318167 CDS YP_749479.1 114561966 4278703 complement(922292..922993) 1 NC_008345.1 KEGG: son:SO3571 hypothetical protein; hypothetical protein 922993 4278703 Sfri_0786 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749479.1 922292 R 318167 CDS YP_749480.1 114561967 4278704 complement(923058..923903) 1 NC_008345.1 PFAM: pseudouridine synthase; KEGG: cps:CPS_3679 RNA pseudouridine synthase family protein; pseudouridine synthase 923903 4278704 Sfri_0787 Shewanella frigidimarina NCIMB 400 pseudouridine synthase YP_749480.1 923058 R 318167 CDS YP_749481.1 114561968 4278705 924085..924861 1 NC_008345.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 924861 4278705 Sfri_0788 Shewanella frigidimarina NCIMB 400 prolipoprotein diacylglyceryl transferase YP_749481.1 924085 D 318167 CDS YP_749482.1 114561969 4278706 complement(924971..925813) 1 NC_008345.1 PFAM: sulfotransferase; KEGG: rru:Rru_A1463 sulfotransferase; sulfotransferase 925813 4278706 Sfri_0789 Shewanella frigidimarina NCIMB 400 sulfotransferase YP_749482.1 924971 R 318167 CDS YP_749483.1 114561970 4278707 926338..927828 1 NC_008345.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: vfi:VFA1052 sulfate transporter; sulfate transporter 927828 4278707 Sfri_0790 Shewanella frigidimarina NCIMB 400 sulfate transporter YP_749483.1 926338 D 318167 CDS YP_749484.1 114561971 4278708 927858..928715 1 NC_008345.1 PFAM: UspA domain protein; KEGG: plt:Plut_0944 UspA-related nucleotide-binding protein; UspA domain-containing protein 928715 4278708 Sfri_0791 Shewanella frigidimarina NCIMB 400 UspA domain-containing protein YP_749484.1 927858 D 318167 CDS YP_749485.1 114561972 4278709 complement(929140..933360) 1 NC_008345.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO0988 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 933360 4278709 Sfri_0792 Shewanella frigidimarina NCIMB 400 formate dehydrogenase subunit alpha YP_749485.1 929140 R 318167 CDS YP_749486.1 114561973 4278710 complement(933803..934519) 1 NC_008345.1 PFAM: protein of unknown function DUF541; KEGG: son:SO4070 hypothetical protein; hypothetical protein 934519 4278710 Sfri_0793 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749486.1 933803 R 318167 CDS YP_749487.1 114561974 4278711 complement(934684..935589) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_A1003 regulatory protein, LysR:LysR, substrate-binding; transcriptional regulator, LysR family protein 935589 4278711 Sfri_0794 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_749487.1 934684 R 318167 CDS YP_749488.1 114561975 4278712 935681..936496 1 NC_008345.1 PFAM: class II aldolase/adducin family protein; KEGG: rso:RSc1767 hypothetical protein; hypothetical protein 936496 4278712 Sfri_0795 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749488.1 935681 D 318167 CDS YP_749489.1 114561976 4277892 936633..937526 1 NC_008345.1 PFAM: Bile acid:sodium symporter; KEGG: syn:sll1428 P3 protein; bile acid:sodium symporter 937526 4277892 Sfri_0796 Shewanella frigidimarina NCIMB 400 bile acid:sodium symporter YP_749489.1 936633 D 318167 CDS YP_749490.1 114561977 4277893 complement(937732..938856) 1 NC_008345.1 KEGG: son:SO1695 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 938856 4277893 Sfri_0797 Shewanella frigidimarina NCIMB 400 PAS/PAC sensor-containing diguanylate cyclase YP_749490.1 937732 R 318167 CDS YP_749491.1 114561978 4277894 complement(939390..939773) 1 NC_008345.1 KEGG: son:SO1698 hypothetical protein; hypothetical protein 939773 4277894 Sfri_0798 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749491.1 939390 R 318167 CDS YP_749492.1 114561979 4277895 complement(939783..943091) 1 NC_008345.1 PFAM: TPR repeat-containing protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO1699 transcriptional regulator; transcriptional regulator CadC 943091 4277895 Sfri_0799 Shewanella frigidimarina NCIMB 400 transcriptional regulator CadC YP_749492.1 939783 R 318167 CDS YP_749493.1 114561980 4277896 complement(943297..944262) 1 NC_008345.1 PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; KEGG: bja:bll0134 2-dehydropantoate 2-reductase; 2-dehydropantoate 2-reductase 944262 4277896 Sfri_0800 Shewanella frigidimarina NCIMB 400 2-dehydropantoate 2-reductase YP_749493.1 943297 R 318167 CDS YP_749494.1 114561981 4277897 944402..945715 1 NC_008345.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cps:CPS_1348 putative Xaa-Pro dipeptidase; amidohydrolase 945715 4277897 Sfri_0801 Shewanella frigidimarina NCIMB 400 amidohydrolase YP_749494.1 944402 D 318167 CDS YP_749495.1 114561982 4277898 946091..947056 1 NC_008345.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: syf:Synpcc7942_1811 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; diguanylate cyclase 947056 4277898 Sfri_0802 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_749495.1 946091 D 318167 CDS YP_749496.1 114561983 4277899 complement(947260..947706) 1 NC_008345.1 PFAM: regulatory protein, MarR; KEGG: pae:PA2849 probable transcriptional regulator; transcriptional regulator, MarR family protein 947706 4277899 Sfri_0803 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MarR family protein YP_749496.1 947260 R 318167 CDS YP_749497.1 114561984 4277900 947912..948940 1 NC_008345.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: vpa:VPA1416 putative oxidoreductase; alcohol dehydrogenase 948940 4277900 Sfri_0804 Shewanella frigidimarina NCIMB 400 alcohol dehydrogenase YP_749497.1 947912 D 318167 CDS YP_749498.1 114561985 4277901 948984..949661 1 NC_008345.1 PFAM: ThiJ/PfpI domain protein; KEGG: psp:PSPPH_3239 ThiJ/PfpI family protein; ThiJ/PfpI domain-containing protein 949661 4277901 Sfri_0805 Shewanella frigidimarina NCIMB 400 ThiJ/PfpI domain-containing protein YP_749498.1 948984 D 318167 CDS YP_749499.1 114561986 4277902 949794..950414 1 NC_008345.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: pha:PSHAb0122 putative glutathione S-transferase; glutathione S-transferase domain-containing protein 950414 4277902 Sfri_0806 Shewanella frigidimarina NCIMB 400 glutathione S-transferase domain-containing protein YP_749499.1 949794 D 318167 CDS YP_749500.1 114561987 4277903 950638..951237 1 NC_008345.1 KEGG: cps:CPS_1725 hypothetical protein; hypothetical protein 951237 4277903 Sfri_0807 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749500.1 950638 D 318167 CDS YP_749501.1 114561988 4277904 complement(951227..952060) 1 NC_008345.1 KEGG: son:SO3722 hypothetical protein; hypothetical protein 952060 4277904 Sfri_0808 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749501.1 951227 R 318167 CDS YP_749502.1 114561989 4277905 complement(952126..953349) 1 NC_008345.1 PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_0120 transporter, MFS superfamily; major facilitator transporter 953349 4277905 Sfri_0809 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_749502.1 952126 R 318167 CDS YP_749503.1 114561990 4277906 953546..954949 1 NC_008345.1 KEGG: cps:CPS_0693 hypothetical protein; hypothetical protein 954949 4277906 Sfri_0810 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749503.1 953546 D 318167 CDS YP_749504.1 114561991 4277907 954993..956156 1 NC_008345.1 KEGG: cps:CPS_0694 putative lipoprotein; putative lipoprotein 956156 4277907 Sfri_0811 Shewanella frigidimarina NCIMB 400 putative lipoprotein YP_749504.1 954993 D 318167 CDS YP_749505.1 114561992 4277908 956299..957927 1 NC_008345.1 PFAM: protein of unknown function DUF1111; KEGG: cps:CPS_0695 putative lipoprotein; hypothetical protein 957927 4277908 Sfri_0812 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749505.1 956299 D 318167 CDS YP_749506.1 114561993 4277909 958120..958641 1 NC_008345.1 KEGG: son:SO3720 protoporphyrinogen oxidase; protoporphyrinogen oxidase 958641 4277909 Sfri_0813 Shewanella frigidimarina NCIMB 400 protoporphyrinogen oxidase YP_749506.1 958120 D 318167 CDS YP_749507.1 114561994 4278767 958645..959160 1 NC_008345.1 KEGG: son:SO3719 hypothetical protein; hypothetical protein 959160 4278767 Sfri_0814 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749507.1 958645 D 318167 CDS YP_749508.1 114561995 4278768 complement(959231..960130) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_4921 substrate-binding transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 960130 4278768 Sfri_0815 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_749508.1 959231 R 318167 CDS YP_749509.1 114561996 4278769 960263..961234 1 NC_008345.1 PFAM: aldo/keto reductase; KEGG: pha:PSHAa0541 oxidoreductase, aldo/keto reductase; aldo/keto reductase 961234 4278769 Sfri_0816 Shewanella frigidimarina NCIMB 400 aldo/keto reductase YP_749509.1 960263 D 318167 CDS YP_749510.1 114561997 4278770 961308..963107 1 NC_008345.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: cps:CPS_0985 putative alpha amylase; alpha amylase, catalytic region 963107 4278770 Sfri_0817 Shewanella frigidimarina NCIMB 400 alpha amylase, catalytic region YP_749510.1 961308 D 318167 CDS YP_749511.1 114561998 4278771 complement(963168..963824) 1 NC_008345.1 PFAM: DSBA oxidoreductase; KEGG: son:SO3718 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase 963824 4278771 Sfri_0818 Shewanella frigidimarina NCIMB 400 DSBA oxidoreductase YP_749511.1 963168 R 318167 CDS YP_749512.1 114561999 4278772 complement(964284..964943) 1 NC_008345.1 PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO3716 DnaJ domain protein; heat shock protein DnaJ domain-containing protein 964943 4278772 Sfri_0819 Shewanella frigidimarina NCIMB 400 heat shock protein DnaJ domain-containing protein YP_749512.1 964284 R 318167 CDS YP_749513.1 114562000 4278773 965302..965868 1 NC_008345.1 KEGG: son:SO0807 hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase 965868 4278773 Sfri_0820 Shewanella frigidimarina NCIMB 400 hypoxanthine-guanine phosphoribosyltransferase YP_749513.1 965302 D 318167 CDS YP_749514.1 114562001 4278774 966001..967935 1 NC_008345.1 PFAM: peptidase U32; KEGG: son:SO3797 peptidase, U32 family; peptidase U32 967935 4278774 Sfri_0821 Shewanella frigidimarina NCIMB 400 peptidase U32 YP_749514.1 966001 D 318167 CDS YP_749515.1 114562002 4278775 968130..968453 1 NC_008345.1 KEGG: son:SO0808 hypothetical protein; hypothetical protein 968453 4278775 Sfri_0822 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749515.1 968130 D 318167 CDS YP_749516.1 114562003 4278776 968579..969244 1 NC_008345.1 hypothetical protein 969244 4278776 Sfri_0823 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749516.1 968579 D 318167 CDS YP_749517.1 114562004 4278777 969911..971890 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0815 TonB-dependent receptor C-terminal domain protein; TonB-dependent receptor, plug 971890 4278777 Sfri_0824 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor, plug YP_749517.1 969911 D 318167 CDS YP_749518.1 114562005 4278778 972004..972750 1 NC_008345.1 KEGG: son:SO0816 hypothetical protein; putative signal transduction protein 972750 4278778 Sfri_0825 Shewanella frigidimarina NCIMB 400 putative signal transduction protein YP_749518.1 972004 D 318167 CDS YP_749519.1 114562006 4278779 complement(972733..973635) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0817 transcriptional activator protein MetR; transcriptional regulator, LysR family protein 973635 4278779 Sfri_0826 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_749519.1 972733 R 318167 CDS YP_749520.1 114562007 4278780 974405..974680 1 NC_008345.1 PFAM: protein of unknown function DUF1458; KEGG: rso:RS05065 hypothetical protein; hypothetical protein 974680 4278780 Sfri_0829 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749520.1 974405 D 318167 CDS YP_749521.1 114562008 4278781 complement(974702..975988) 1 NC_008345.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: son:SO3861 iron-sulfur cluster-binding protein; putative iron-sulfur cluster binding protein 975988 4278781 Sfri_0830 Shewanella frigidimarina NCIMB 400 putative iron-sulfur cluster binding protein YP_749521.1 974702 R 318167 CDS YP_749522.1 114562009 4278782 complement(975972..977855) 1 NC_008345.1 KEGG: cps:CPS_0629 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 977855 4278782 Sfri_0831 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_749522.1 975972 R 318167 CDS YP_749523.1 114562010 4278783 978274..978708 1 NC_008345.1 KEGG: son:SO3856 hypothetical protein; hypothetical protein 978708 4278783 Sfri_0832 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749523.1 978274 D 318167 CDS YP_749524.1 114562011 4276930 complement(978865..980553) 1 NC_008345.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 980553 4276930 Sfri_0833 Shewanella frigidimarina NCIMB 400 malate dehydrogenase YP_749524.1 978865 R 318167 CDS YP_749525.1 114562012 4276931 complement(980840..981304) 1 NC_008345.1 PFAM: protein of unknown function DUF1456; KEGG: son:SO3852 hypothetical protein; hypothetical protein 981304 4276931 Sfri_0834 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749525.1 980840 R 318167 CDS YP_749526.1 114562013 4276932 complement(981506..982771) 1 NC_008345.1 KEGG: vpa:VP2681 putative manganese transporter; putative manganese transporter 982771 4276932 Sfri_0835 Shewanella frigidimarina NCIMB 400 putative manganese transporter YP_749526.1 981506 R 318167 CDS YP_749527.1 114562014 4276933 complement(982784..983323) 1 NC_008345.1 PFAM: membrane-flanked domain; KEGG: son:SO3849 hypothetical protein; membrane-flanked domain-containing protein 983323 4276933 Sfri_0836 Shewanella frigidimarina NCIMB 400 membrane-flanked domain-containing protein YP_749527.1 982784 R 318167 CDS YP_749528.1 114562015 4276934 983548..986115 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa0840 TonB-dependent receptor; TonB-dependent receptor 986115 4276934 Sfri_0837 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor YP_749528.1 983548 D 318167 CDS YP_749529.1 114562016 4276935 986163..986846 1 NC_008345.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: sme:SMb20420 putative glutathione S-transferase protein; glutathione S-transferase domain-containing protein 986846 4276935 Sfri_0838 Shewanella frigidimarina NCIMB 400 glutathione S-transferase domain-containing protein YP_749529.1 986163 D 318167 CDS YP_749530.1 114562017 4276936 complement(986909..987421) 1 NC_008345.1 KEGG: son:SO3848 hypothetical protein; hypothetical protein 987421 4276936 Sfri_0839 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749530.1 986909 R 318167 CDS YP_749531.1 114562018 4276937 complement(987501..987902) 1 NC_008345.1 KEGG: son:SO3847 hypothetical protein; hypothetical protein 987902 4276937 Sfri_0840 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749531.1 987501 R 318167 CDS YP_749532.1 114562019 4276938 complement(988018..988797) 1 NC_008345.1 KEGG: son:SO3846 hypothetical protein; hypothetical protein 988797 4276938 Sfri_0841 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749532.1 988018 R 318167 CDS YP_749533.1 114562020 4276939 complement(989013..991100) 1 NC_008345.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO3844 peptidase, M13 family; endothelin-converting protein 1 991100 4276939 Sfri_0842 Shewanella frigidimarina NCIMB 400 endothelin-converting protein 1 YP_749533.1 989013 R 318167 CDS YP_749534.1 114562021 4276940 991393..992082 1 NC_008345.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ssn:SSO_2239 16S pseudouridylate 516 synthase; pseudouridine synthase, Rsu 992082 4276940 Sfri_0843 Shewanella frigidimarina NCIMB 400 pseudouridine synthase, Rsu YP_749534.1 991393 D 318167 CDS YP_749535.1 114562022 4276941 complement(992287..993225) 1 NC_008345.1 KEGG: son:SO3842 hypothetical protein; hypothetical protein 993225 4276941 Sfri_0844 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749535.1 992287 R 318167 CDS YP_749536.1 114562023 4276942 complement(993222..993830) 1 NC_008345.1 KEGG: son:SO3841 hypothetical protein; hypothetical protein 993830 4276942 Sfri_0845 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749536.1 993222 R 318167 CDS YP_749537.1 114562024 4276943 complement(993827..994324) 1 NC_008345.1 PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO3840 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 994324 4276943 Sfri_0846 Shewanella frigidimarina NCIMB 400 ECF subfamily RNA polymerase sigma-24 factor YP_749537.1 993827 R 318167 CDS YP_749538.1 114562025 4276944 994624..996486 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3838 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 996486 4276944 Sfri_0847 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_749538.1 994624 D 318167 CDS YP_749539.1 114562026 4276945 complement(996639..997298) 1 NC_008345.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 997298 4276945 Sfri_0848 Shewanella frigidimarina NCIMB 400 ribose-5-phosphate isomerase A YP_749539.1 996639 R 318167 CDS YP_749540.1 114562027 4276946 complement(997363..998175) 1 NC_008345.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pca:Pcar_2715 small-conductance mechanosensitive channel; MscS mechanosensitive ion channel 998175 4276946 Sfri_0849 Shewanella frigidimarina NCIMB 400 MscS mechanosensitive ion channel YP_749540.1 997363 R 318167 CDS YP_749541.1 114562028 4276947 complement(998187..999539) 1 NC_008345.1 KEGG: pca:Pcar_2714 hypothetical protein; hypothetical protein 999539 4276947 Sfri_0850 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749541.1 998187 R 318167 CDS YP_749542.1 114562029 4278679 999830..1000738 1 NC_008345.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 1000738 pbpG 4278679 pbpG Shewanella frigidimarina NCIMB 400 D-alanyl-D-alanine endopeptidase YP_749542.1 999830 D 318167 CDS YP_749543.1 114562030 4278680 1000910..1001554 1 NC_008345.1 KEGG: ilo:IL0065 predicted transcription negative regulator; anti-ECFsigma factor ChrR 1001554 4278680 Sfri_0852 Shewanella frigidimarina NCIMB 400 anti-ECFsigma factor ChrR YP_749543.1 1000910 D 318167 CDS YP_749544.1 114562031 4278681 1001641..1002258 1 NC_008345.1 PFAM: Negative transcriptional regulator; KEGG: gka:GK0739 transcriptional repressor of sporulation and degradative enzyme production; negative transcriptional regulator 1002258 4278681 Sfri_0853 Shewanella frigidimarina NCIMB 400 negative transcriptional regulator YP_749544.1 1001641 D 318167 CDS YP_749545.1 114562032 4278682 1002358..1003656 1 NC_008345.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_1258 putative MFS transporter family protein; major facilitator transporter 1003656 4278682 Sfri_0854 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_749545.1 1002358 D 318167 CDS YP_749546.1 114562033 4278683 1003892..1004242 1 NC_008345.1 KEGG: vfi:VFA0727 hypothetical cytosolic protein; hypothetical protein 1004242 4278683 Sfri_0855 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749546.1 1003892 D 318167 CDS YP_749547.1 114562034 4278684 1004418..1004966 1 NC_008345.1 PFAM: methylation site containing protein; KEGG: son:SO3781 hypothetical protein; methylation site containing protein 1004966 4278684 Sfri_0856 Shewanella frigidimarina NCIMB 400 methylation site containing protein YP_749547.1 1004418 D 318167 CDS YP_749548.1 114562035 4278685 1005349..1005837 1 NC_008345.1 KEGG: nmu:Nmul_A1768 hypothetical protein; hypothetical protein 1005837 4278685 Sfri_0857 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749548.1 1005349 D 318167 CDS YP_749549.1 114562036 4278686 complement(1005955..1007244) 1 NC_008345.1 PFAM: cytochrome c, class I; KEGG: pae:PA4619 probable C-type cytochrome; cytochrome c, class I 1007244 4278686 Sfri_0858 Shewanella frigidimarina NCIMB 400 cytochrome c, class I YP_749549.1 1005955 R 318167 CDS YP_749550.1 114562037 4278687 complement(1007241..1007777) 1 NC_008345.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bur:Bcep18194_B1542 (2Fe-2S)-binding protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1007777 4278687 Sfri_0859 Shewanella frigidimarina NCIMB 400 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_749550.1 1007241 R 318167 CDS YP_749551.1 114562038 4278688 complement(1007774..1010647) 1 NC_008345.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: pfo:Pfl_1905 twin-arginine translocation pathway signal; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 1010647 4278688 Sfri_0860 Shewanella frigidimarina NCIMB 400 molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_749551.1 1007774 R 318167 CDS YP_749552.1 114562039 4278689 1011558..1013186 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3582 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1013186 4278689 Sfri_0861 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_749552.1 1011558 D 318167 CDS YP_749553.1 114562040 4278690 1013523..1014809 1 NC_008345.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: son:SO1708 4-hydroxybutyrate coenzyme A transferase; acetyl-CoA hydrolase/transferase 1014809 4278690 Sfri_0862 Shewanella frigidimarina NCIMB 400 acetyl-CoA hydrolase/transferase YP_749553.1 1013523 D 318167 CDS YP_749554.1 114562041 4278691 1015589..1016314 1 NC_008345.1 hypothetical protein 1016314 4278691 Sfri_0863 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749554.1 1015589 D 318167 CDS YP_749555.1 114562042 4278692 complement(1016762..1017805) 1 NC_008345.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: sde:Sde_3077 response regulator receiver domain protein (CheY-like); transposase IS116/IS110/IS902 family protein 1017805 4278692 Sfri_0864 Shewanella frigidimarina NCIMB 400 transposase IS116/IS110/IS902 family protein YP_749555.1 1016762 R 318167 CDS YP_749556.1 114562043 4278693 1018193..1018504 1 NC_008345.1 PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 1018504 4278693 Sfri_0865 Shewanella frigidimarina NCIMB 400 transposase IS3/IS911 family protein YP_749556.1 1018193 D 318167 CDS YP_749557.1 114562044 4278694 1018558..1019370 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 1019370 4278694 Sfri_0866 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_749557.1 1018558 D 318167 CDS YP_749558.1 114562045 4278695 1019805..1020227 1 NC_008345.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0452 thioredoxin 2; thioredoxin 1020227 4278695 Sfri_0867 Shewanella frigidimarina NCIMB 400 thioredoxin YP_749558.1 1019805 D 318167 CDS YP_749559.1 114562046 4278625 1020322..1020768 1 NC_008345.1 KEGG: vch:VCA0425 hypothetical protein; hypothetical protein 1020768 4278625 Sfri_0868 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749559.1 1020322 D 318167 CDS YP_749560.1 114562047 4278626 1021085..1021564 1 NC_008345.1 KEGG: ppr:PBPRA1069 hypothetical protein; hypothetical protein 1021564 4278626 Sfri_0869 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749560.1 1021085 D 318167 CDS YP_749561.1 114562048 4278627 complement(1022002..1023156) 1 NC_008345.1 PFAM: lipase, class 3; KEGG: vvy:VVA0214 predicted lipase; lipase, class 3 1023156 4278627 Sfri_0870 Shewanella frigidimarina NCIMB 400 lipase, class 3 YP_749561.1 1022002 R 318167 CDS YP_749562.1 114562049 4278628 complement(1023185..1023757) 1 NC_008345.1 KEGG: ppr:PBPRA1068 hypothetical protein; hypothetical protein 1023757 4278628 Sfri_0871 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749562.1 1023185 R 318167 CDS YP_749563.1 114562050 4278629 complement(1024225..1027941) 1 NC_008345.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 1027941 metH 4278629 metH Shewanella frigidimarina NCIMB 400 B12-dependent methionine synthase YP_749563.1 1024225 R 318167 CDS YP_749564.1 114562051 4278630 1028212..1028955 1 NC_008345.1 PFAM: Phosphoglycerate mutase; KEGG: son:SO1031 alpha-ribazole-5'-phosphate phosphatase, putative; phosphoglycerate mutase 1028955 4278630 Sfri_0873 Shewanella frigidimarina NCIMB 400 phosphoglycerate mutase YP_749564.1 1028212 D 318167 CDS YP_749565.1 114562052 4278631 1029253..1030062 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1033 iron-compound ABC transporter, ATP-binding protein, putative; ABC transporter 1030062 4278631 Sfri_0874 Shewanella frigidimarina NCIMB 400 ABC transporter YP_749565.1 1029253 D 318167 CDS YP_749566.1 114562053 4278632 1030055..1031161 1 NC_008345.1 PFAM: transport system permease protein; KEGG: son:SO1034 iron-compound ABC transporter, permease protein; transport system permease protein 1031161 4278632 Sfri_0875 Shewanella frigidimarina NCIMB 400 transport system permease protein YP_749566.1 1030055 D 318167 CDS YP_749567.1 114562054 4278633 1031291..1032346 1 NC_008345.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1032346 cobT 4278633 cobT Shewanella frigidimarina NCIMB 400 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_749567.1 1031291 D 318167 CDS YP_749568.1 114562055 4278634 1032356..1033141 1 NC_008345.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1033141 cobS 4278634 cobS Shewanella frigidimarina NCIMB 400 cobalamin synthase YP_749568.1 1032356 D 318167 CDS YP_749569.1 114562056 4278635 1033141..1033671 1 NC_008345.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: son:SO1037 cobinamide kinase/cobinamide phosphate guanylyltransferase; cobalbumin biosynthesis protein 1033671 4278635 Sfri_0878 Shewanella frigidimarina NCIMB 400 cobalbumin biosynthesis protein YP_749569.1 1033141 D 318167 CDS YP_749570.1 114562057 4278636 1033671..1035242 1 NC_008345.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1035242 4278636 Sfri_0879 Shewanella frigidimarina NCIMB 400 cobyric acid synthase YP_749570.1 1033671 D 318167 CDS YP_749571.1 114562058 4278637 1035239..1035868 1 NC_008345.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1035868 4278637 Sfri_0880 Shewanella frigidimarina NCIMB 400 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_749571.1 1035239 D 318167 CDS YP_749572.1 114562059 4278638 complement(1035945..1036754) 1 NC_008345.1 SMART: extracellular solute-binding protein, family 3; KEGG: hch:HCH_00910 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; extracellular solute-binding protein 1036754 4278638 Sfri_0881 Shewanella frigidimarina NCIMB 400 extracellular solute-binding protein YP_749572.1 1035945 R 318167 CDS YP_749573.1 114562060 4278639 complement(1036904..1037260) 1 NC_008345.1 PFAM: helix-turn-helix, HxlR type; KEGG: cps:CPS_1319 transcriptional regulator; transcriptional regulator, HxlR family protein 1037260 4278639 Sfri_0882 Shewanella frigidimarina NCIMB 400 transcriptional regulator, HxlR family protein YP_749573.1 1036904 R 318167 CDS YP_749574.1 114562061 4278640 1037382..1038743 1 NC_008345.1 PFAM: aldehyde dehydrogenase; KEGG: cps:CPS_1321 aldehyde dehydrogenase (NAD) family protein; aldehyde dehydrogenase 1038743 4278640 Sfri_0883 Shewanella frigidimarina NCIMB 400 aldehyde dehydrogenase YP_749574.1 1037382 D 318167 CDS YP_749575.1 114562062 4278641 1038754..1039533 1 NC_008345.1 SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: cps:CPS_1322 oxidoreductase, 2OG-Fe(II) oxygenase family; prolyl 4-hydroxylase, alpha subunit 1039533 4278641 Sfri_0884 Shewanella frigidimarina NCIMB 400 prolyl 4-hydroxylase, alpha subunit YP_749575.1 1038754 D 318167 CDS YP_749576.1 114562063 4278642 1040133..1040717 1 NC_008345.1 hypothetical protein 1040717 4278642 Sfri_0885 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749576.1 1040133 D 318167 CDS YP_749577.1 114562064 4276983 complement(1040904..1042643) 1 NC_008345.1 PFAM: pseudouridine synthase; KEGG: vfi:VFA0485 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase 1042643 4276983 Sfri_0886 Shewanella frigidimarina NCIMB 400 pseudouridine synthase YP_749577.1 1040904 R 318167 CDS YP_749578.1 114562065 4276984 complement(1042814..1043599) 1 NC_008345.1 PFAM: beta-lactamase domain protein; KEGG: bce:BC3440 beta-lactamase, type II; Beta-lactamase 1043599 4276984 Sfri_0887 Shewanella frigidimarina NCIMB 400 Beta-lactamase YP_749578.1 1042814 R 318167 CDS YP_749579.1 114562066 4276985 complement(1043864..1044247) 1 NC_008345.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppr:PBPRB0453 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 1044247 4276985 Sfri_0888 Shewanella frigidimarina NCIMB 400 glyoxalase/bleomycin resistance protein/dioxygenase YP_749579.1 1043864 R 318167 CDS YP_749580.1 114562067 4276986 complement(1044314..1045636) 1 NC_008345.1 PFAM: ABC-1 domain protein; KEGG: vpa:VPA1239 putative ABC transporter; hypothetical protein 1045636 4276986 Sfri_0889 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749580.1 1044314 R 318167 CDS YP_749581.1 114562068 4276987 1045817..1047391 1 NC_008345.1 PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: eli:ELI_00455 TPR domain protein; sulfotransferase 1047391 4276987 Sfri_0890 Shewanella frigidimarina NCIMB 400 sulfotransferase YP_749581.1 1045817 D 318167 CDS YP_749582.1 114562069 4276988 complement(1047519..1048694) 1 NC_008345.1 PFAM: SEC-C motif domain protein; Aspartyl/Asparaginyl beta-hydroxylase; KEGG: cps:CPS_4429 aspartyl/asparaginyl beta-hydroxylase family protein; SecC motif-containing protein 1048694 4276988 Sfri_0891 Shewanella frigidimarina NCIMB 400 SecC motif-containing protein YP_749582.1 1047519 R 318167 CDS YP_749583.1 114562070 4276989 complement(1048794..1049822) 1 NC_008345.1 PFAM: sulfotransferase; SEC-C motif domain protein; KEGG: tbd:Tbd_0299 hypothetical protein; SecC motif-containing protein 1049822 4276989 Sfri_0892 Shewanella frigidimarina NCIMB 400 SecC motif-containing protein YP_749583.1 1048794 R 318167 CDS YP_749584.1 114562071 4276990 complement(1049881..1050423) 1 NC_008345.1 PFAM: isochorismatase hydrolase; KEGG: son:SO0762 isochorismatase family protein; isochorismatase hydrolase 1050423 4276990 Sfri_0893 Shewanella frigidimarina NCIMB 400 isochorismatase hydrolase YP_749584.1 1049881 R 318167 CDS YP_749585.1 114562072 4276991 1050555..1051592 1 NC_008345.1 KEGG: son:SO3711 hypothetical protein; hypothetical protein 1051592 4276991 Sfri_0894 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749585.1 1050555 D 318167 CDS YP_749586.1 114562073 4276992 1051732..1052598 1 NC_008345.1 PFAM: periplasmic binding protein; KEGG: son:SO3709 ABC transporter, periplasmic substrate-binding protein, putative; periplasmic binding protein 1052598 4276992 Sfri_0895 Shewanella frigidimarina NCIMB 400 periplasmic binding protein YP_749586.1 1051732 D 318167 CDS YP_749587.1 114562074 4276993 1053434..1054522 1 NC_008345.1 KEGG: sec:SC147 hypothetical protein; hypothetical protein 1054522 4276993 Sfri_0896 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749587.1 1053434 D 318167 CDS YP_749588.1 114562075 4276994 1055324..1056583 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO3694 HlyD family secretion protein; RND family efflux transporter MFP subunit 1056583 4276994 Sfri_0897 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_749588.1 1055324 D 318167 CDS YP_749589.1 114562076 4276995 1057023..1057721 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3692 ABC transporter, ATP-binding protein; ABC transporter 1057721 4276995 Sfri_0898 Shewanella frigidimarina NCIMB 400 ABC transporter YP_749589.1 1057023 D 318167 CDS YP_749590.1 114562077 4276996 1057732..1059045 1 NC_008345.1 PFAM: protein of unknown function DUF214; KEGG: xcv:XCV3757 ABC transporter permease; hypothetical protein 1059045 4276996 Sfri_0899 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749590.1 1057732 D 318167 CDS YP_749591.1 114562078 4276997 1059076..1060284 1 NC_008345.1 PFAM: protein of unknown function DUF214; KEGG: son:SO3690 ABC transporter, permease protein; hypothetical protein 1060284 4276997 Sfri_0900 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749591.1 1059076 D 318167 CDS YP_749592.1 114562079 4276998 1060404..1061852 1 NC_008345.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: son:SO3689 sigma-54 dependent nitrogen response regulator; Fis family two component sigma-54-specific transcriptional regulator 1061852 4276998 Sfri_0901 Shewanella frigidimarina NCIMB 400 Fis family two component sigma-54-specific transcriptional regulator YP_749592.1 1060404 D 318167 CDS YP_749593.1 114562080 4276999 1061855..1063210 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3688 nitrogen regulation protein NtrY, putative; periplasmic sensor signal transduction histidine kinase 1063210 4276999 Sfri_0902 Shewanella frigidimarina NCIMB 400 periplasmic sensor signal transduction histidine kinase YP_749593.1 1061855 D 318167 CDS YP_749594.1 114562081 4278607 complement(1063461..1064270) 1 NC_008345.1 KEGG: cps:CPS_3405 hypothetical protein; hypothetical protein 1064270 4278607 Sfri_0903 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749594.1 1063461 R 318167 CDS YP_749595.1 114562082 4278608 complement(1064273..1065211) 1 NC_008345.1 PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: cps:CPS_3406 hypothetical protein; hypothetical protein 1065211 4278608 Sfri_0904 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749595.1 1064273 R 318167 CDS YP_749596.1 114562083 4278609 complement(1065336..1065794) 1 NC_008345.1 KEGG: cps:CPS_3407 putative lipoprotein; putative lipoprotein 1065794 4278609 Sfri_0905 Shewanella frigidimarina NCIMB 400 putative lipoprotein YP_749596.1 1065336 R 318167 CDS YP_749597.1 114562084 4278610 1066181..1066564 1 NC_008345.1 KEGG: son:SO3708 hypothetical protein; hypothetical protein 1066564 4278610 Sfri_0906 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749597.1 1066181 D 318167 CDS YP_749598.1 114562085 4278611 complement(1066679..1066924) 1 NC_008345.1 KEGG: son:SO3591 hypothetical protein; hypothetical protein 1066924 4278611 Sfri_0907 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749598.1 1066679 R 318167 CDS YP_749599.1 114562086 4278612 1067012..1067632 1 NC_008345.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: vpa:VP2915 hypothetical protein; uracil-DNA glycosylase superfamily protein 1067632 4278612 Sfri_0908 Shewanella frigidimarina NCIMB 400 uracil-DNA glycosylase superfamily protein YP_749599.1 1067012 D 318167 CDS YP_749600.1 114562087 4278613 complement(1067675..1068175) 1 NC_008345.1 KEGG: son:SO3587 hypothetical protein; hypothetical protein 1068175 4278613 Sfri_0909 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749600.1 1067675 R 318167 CDS YP_749601.1 114562088 4278614 complement(1068323..1070971) 1 NC_008345.1 KEGG: pha:PSHAa2038 uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; DNA polymerase, beta domain protein region; metal-dependent phosphohydrolase, HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase, HD region; UTP-GlnB uridylyltransferase, GlnD 1070971 4278614 Sfri_0910 Shewanella frigidimarina NCIMB 400 UTP-GlnB uridylyltransferase, GlnD YP_749601.1 1068323 R 318167 CDS YP_749602.1 114562089 4278615 1071053..1071766 1 NC_008345.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; KEGG: cps:CPS_4413 putative ribosomal small subunit pseudouridine synthase A; pseudouridine synthase, Rsu 1071766 4278615 Sfri_0911 Shewanella frigidimarina NCIMB 400 pseudouridine synthase, Rsu YP_749602.1 1071053 D 318167 CDS YP_749603.1 114562090 4278616 1071831..1072787 1 NC_008345.1 PFAM: regulatory protein, LysR; KEGG: son:SO1661 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 1072787 4278616 Sfri_0912 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_749603.1 1071831 D 318167 CDS YP_749604.1 114562091 4278617 1073125..1075437 1 NC_008345.1 KEGG: son:SO1659 decaheme cytochrome c; decaheme cytochrome c 1075437 4278617 Sfri_0913 Shewanella frigidimarina NCIMB 400 decaheme cytochrome c YP_749604.1 1073125 D 318167 CDS YP_749605.1 114562092 4278618 complement(1076067..1077602) 1 NC_008345.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1505 transporter, putative; major facilitator transporter 1077602 4278618 Sfri_0914 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_749605.1 1076067 R 318167 CDS YP_749606.1 114562093 4278619 complement(1077885..1078223) 1 NC_008345.1 PFAM: SEC-C motif domain protein; KEGG: ppr:PBPRA1441 hypothetical protein; SecC motif-containing protein 1078223 4278619 Sfri_0915 Shewanella frigidimarina NCIMB 400 SecC motif-containing protein YP_749606.1 1077885 R 318167 CDS YP_749607.1 114562094 4278620 complement(1078439..1081345) 1 NC_008345.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1081345 valS 4278620 valS Shewanella frigidimarina NCIMB 400 valyl-tRNA synthetase YP_749607.1 1078439 R 318167 CDS YP_749608.1 114562095 4278621 complement(1081379..1081828) 1 NC_008345.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: son:SO3423 DNA polymerase III, chi subunit; DNA polymerase III chi subunit, HolC 1081828 4278621 Sfri_0917 Shewanella frigidimarina NCIMB 400 DNA polymerase III chi subunit, HolC YP_749608.1 1081379 R 318167 CDS YP_749609.1 114562096 4278622 complement(1081914..1082285) 1 NC_008345.1 KEGG: ilo:IL0309 hypothetical protein; hypothetical protein 1082285 4278622 Sfri_0918 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749609.1 1081914 R 318167 CDS YP_749610.1 114562097 4278623 complement(1082298..1083221) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pfo:Pfl_4320 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 1083221 4278623 Sfri_0919 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_749610.1 1082298 R 318167 CDS YP_749611.1 114562098 4278624 1083338..1084093 1 NC_008345.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hch:HCH_02025 short-chain alcohol dehydrogenase-like protein; short-chain dehydrogenase/reductase SDR 1084093 4278624 Sfri_0920 Shewanella frigidimarina NCIMB 400 short-chain dehydrogenase/reductase SDR YP_749611.1 1083338 D 318167 CDS YP_749612.1 114562099 4277334 complement(1084130..1084912) 1 NC_008345.1 SMART: extracellular solute-binding protein, family 3; KEGG: bba:Bd2855 putative ABC amino acid transporter solute binding protein; extracellular solute-binding protein 1084912 4277334 Sfri_0921 Shewanella frigidimarina NCIMB 400 extracellular solute-binding protein YP_749612.1 1084130 R 318167 CDS YP_749613.1 114562100 4277335 complement(1085101..1086384) 1 NC_008345.1 uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 1086384 4277335 Sfri_0922 Shewanella frigidimarina NCIMB 400 inner membrane transport protein YdhC YP_749613.1 1085101 R 318167 CDS YP_749614.1 114562101 4277336 1086588..1087490 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2374 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator 1087490 4277336 Sfri_0923 Shewanella frigidimarina NCIMB 400 putative DNA-binding transcriptional regulator YP_749614.1 1086588 D 318167 CDS YP_749615.1 114562102 4277337 complement(1087601..1089109) 1 NC_008345.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1089109 4277337 Sfri_0924 Shewanella frigidimarina NCIMB 400 leucyl aminopeptidase YP_749615.1 1087601 R 318167 CDS YP_749616.1 114562103 4277338 1089382..1090494 1 NC_008345.1 PFAM: permease YjgP/YjgQ family protein; KEGG: son:SO1369 hypothetical protein; YjgP/YjgQ family permease 1090494 4277338 Sfri_0925 Shewanella frigidimarina NCIMB 400 YjgP/YjgQ family permease YP_749616.1 1089382 D 318167 CDS YP_749617.1 114562104 4277339 1090491..1091549 1 NC_008345.1 PFAM: permease YjgP/YjgQ family protein; KEGG: son:SO1370 hypothetical protein; YjgP/YjgQ family permease 1091549 4277339 Sfri_0926 Shewanella frigidimarina NCIMB 400 YjgP/YjgQ family permease YP_749617.1 1090491 D 318167 CDS YP_749618.1 114562105 4277340 complement(1091677..1092186) 1 NC_008345.1 PFAM: RDD domain containing protein; KEGG: son:SO1371 hypothetical protein; RDD domain-containing protein 1092186 4277340 Sfri_0927 Shewanella frigidimarina NCIMB 400 RDD domain-containing protein YP_749618.1 1091677 R 318167 CDS YP_749619.1 114562106 4277341 complement(1092214..1092468) 1 NC_008345.1 KEGG: son:SO1372 hypothetical protein; hypothetical protein 1092468 4277341 Sfri_0928 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749619.1 1092214 R 318167 CDS YP_749620.1 114562107 4277342 complement(1092484..1092834) 1 NC_008345.1 PFAM: protein of unknown function DUF486; KEGG: son:SO1373 hypothetical protein; hypothetical protein 1092834 4277342 Sfri_0929 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749620.1 1092484 R 318167 CDS YP_749621.1 114562108 4277343 complement(1092845..1093339) 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1374 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1093339 4277343 Sfri_0930 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_749621.1 1092845 R 318167 CDS YP_749622.1 114562109 4277344 1093456..1094043 1 NC_008345.1 KEGG: eli:ELI_10435 hypothetical protein; hypothetical protein 1094043 4277344 Sfri_0931 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749622.1 1093456 D 318167 CDS YP_749623.1 114562110 4277345 complement(1094062..1094805) 1 NC_008345.1 KEGG: hch:HCH_04001 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; hypothetical protein 1094805 4277345 Sfri_0932 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749623.1 1094062 R 318167 CDS YP_749624.1 114562111 4277346 complement(1094857..1095501) 1 NC_008345.1 KEGG: son:SO1380 hypothetical protein; hypothetical protein 1095501 4277346 Sfri_0933 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749624.1 1094857 R 318167 CDS YP_749625.1 114562112 4277347 complement(1095658..1096236) 1 NC_008345.1 KEGG: son:SO3597 hypothetical protein; hypothetical protein 1096236 4277347 Sfri_0934 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749625.1 1095658 R 318167 CDS YP_749626.1 114562113 4277348 1096427..1096741 1 NC_008345.1 PFAM: protein of unknown function DUF1289; KEGG: son:SO3596 hypothetical protein; hypothetical protein 1096741 4277348 Sfri_0935 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749626.1 1096427 D 318167 CDS YP_749627.1 114562114 4277349 complement(1096751..1097371) 1 NC_008345.1 PFAM: regulatory protein, TetR; KEGG: son:SO3684 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein 1097371 4277349 Sfri_0936 Shewanella frigidimarina NCIMB 400 transcriptional regulator, TetR family protein YP_749627.1 1096751 R 318167 CDS YP_749628.1 114562115 4277350 complement(1097501..1098922) 1 NC_008345.1 PFAM: aldehyde dehydrogenase; KEGG: son:SO3683 coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase 1098922 4277350 Sfri_0937 Shewanella frigidimarina NCIMB 400 aldehyde dehydrogenase YP_749628.1 1097501 R 318167 CDS YP_749629.1 114562116 4277666 1099180..1099611 1 NC_008345.1 PFAM: UspA domain protein; KEGG: son:SO3681 universal stress protein family; UspA domain-containing protein 1099611 4277666 Sfri_0938 Shewanella frigidimarina NCIMB 400 UspA domain-containing protein YP_749629.1 1099180 D 318167 CDS YP_749630.1 114562117 4277667 complement(1099651..1100211) 1 NC_008345.1 PFAM: protein of unknown function DUF924; KEGG: ilo:IL1577 hypothetical protein; hypothetical protein 1100211 4277667 Sfri_0939 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749630.1 1099651 R 318167 CDS YP_749631.1 114562118 4277668 complement(1100216..1101841) 1 NC_008345.1 PFAM: membrane-flanked domain; KEGG: sde:Sde_3047 serine/threonine protein kinase; membrane-flanked domain-containing protein 1101841 4277668 Sfri_0940 Shewanella frigidimarina NCIMB 400 membrane-flanked domain-containing protein YP_749631.1 1100216 R 318167 CDS YP_749632.1 114562119 4277669 complement(1101888..1102616) 1 NC_008345.1 PFAM: membrane-flanked domain; KEGG: sde:Sde_3048 hypothetical protein; membrane-flanked domain-containing protein 1102616 4277669 Sfri_0941 Shewanella frigidimarina NCIMB 400 membrane-flanked domain-containing protein YP_749632.1 1101888 R 318167 CDS YP_749633.1 114562120 4277670 1102870..1103196 1 NC_008345.1 KEGG: son:SO3679 hypothetical protein; hypothetical protein 1103196 4277670 Sfri_0942 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749633.1 1102870 D 318167 CDS YP_749634.1 114562121 4277671 1103238..1104206 1 NC_008345.1 PFAM: Mg2 transporter protein, CorA family protein; KEGG: bsu:BG12913 similar to divalent cation transport protein; Mg2 transporter protein, CorA family protein 1104206 4277671 Sfri_0943 Shewanella frigidimarina NCIMB 400 Mg2 transporter protein, CorA family protein YP_749634.1 1103238 D 318167 CDS YP_749635.1 114562122 4277672 1104237..1104896 1 NC_008345.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: son:SO1098 hypothetical alkylated DNA repair protein; 2OG-Fe(II) oxygenase 1104896 4277672 Sfri_0944 Shewanella frigidimarina NCIMB 400 2OG-Fe(II) oxygenase YP_749635.1 1104237 D 318167 CDS YP_749636.1 114562123 4277673 1105169..1105468 1 NC_008345.1 PFAM: BolA family protein; KEGG: son:SO1099 bolA protein; BolA family protein 1105468 4277673 Sfri_0945 Shewanella frigidimarina NCIMB 400 BolA family protein YP_749636.1 1105169 D 318167 CDS YP_749637.1 114562124 4277674 1105633..1106757 1 NC_008345.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: son:SO1100 extracellular solute-binding protein, family 7; TRAP dicarboxylate transporter- DctP subunit 1106757 4277674 Sfri_0946 Shewanella frigidimarina NCIMB 400 TRAP dicarboxylate transporter- DctP subunit YP_749637.1 1105633 D 318167 CDS YP_749638.1 114562125 4277675 1106845..1107354 1 NC_008345.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1107354 4277675 Sfri_0947 Shewanella frigidimarina NCIMB 400 S-ribosylhomocysteinase YP_749638.1 1106845 D 318167 CDS YP_749639.1 114562126 4277676 1107557..1109632 1 NC_008345.1 KEGG: son:SO1102 TonB-dependent receptor C-terminal region domain lipoprotein; TonB-dependent receptor domain-containing protein 1109632 4277676 Sfri_0948 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor domain-containing protein YP_749639.1 1107557 D 318167 CDS YP_749640.1 114562127 4277677 1110090..1111424 1 NC_008345.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1111424 4277677 Sfri_0949 Shewanella frigidimarina NCIMB 400 Na(+)-translocating NADH-quinone reductase subunit A YP_749640.1 1110090 D 318167 CDS YP_749641.1 114562128 4277678 1111424..1112623 1 NC_008345.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1112623 4277678 Sfri_0950 Shewanella frigidimarina NCIMB 400 Na(+)-translocating NADH-quinone reductase subunit B YP_749641.1 1111424 D 318167 CDS YP_749642.1 114562129 4277679 1112616..1113401 1 NC_008345.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1113401 4277679 Sfri_0951 Shewanella frigidimarina NCIMB 400 Na(+)-translocating NADH-quinone reductase subunit C YP_749642.1 1112616 D 318167 CDS YP_749643.1 114562130 4277680 1113401..1114033 1 NC_008345.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1114033 4277680 Sfri_0952 Shewanella frigidimarina NCIMB 400 Na(+)-translocating NADH-quinone reductase subunit D YP_749643.1 1113401 D 318167 CDS YP_749644.1 114562131 4277681 1114039..1114647 1 NC_008345.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1114647 4277681 Sfri_0953 Shewanella frigidimarina NCIMB 400 Na(+)-translocating NADH-quinone reductase subunit E YP_749644.1 1114039 D 318167 CDS YP_749645.1 114562132 4277682 1114694..1115941 1 NC_008345.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1115941 4277682 Sfri_0954 Shewanella frigidimarina NCIMB 400 Na(+)-translocating NADH-quinone reductase subunit F YP_749645.1 1114694 D 318167 CDS YP_749646.1 114562133 4277683 1116063..1117076 1 NC_008345.1 PFAM: ApbE family lipoprotein; KEGG: son:SO1109 thiamin biosynthesis lipoprotein ApbE; ApbE family lipoprotein 1117076 4277683 Sfri_0955 Shewanella frigidimarina NCIMB 400 ApbE family lipoprotein YP_749646.1 1116063 D 318167 CDS YP_749647.1 114562134 4277754 1117162..1117386 1 NC_008345.1 PFAM: protein of unknown function DUF539; KEGG: son:SO1110 hypothetical protein; hypothetical protein 1117386 4277754 Sfri_0956 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749647.1 1117162 D 318167 CDS YP_749648.1 114562135 4277755 1117620..1118090 1 NC_008345.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: son:SO1111 bacterioferritin subunit 2; bacterioferritin 1118090 4277755 Sfri_0957 Shewanella frigidimarina NCIMB 400 bacterioferritin YP_749648.1 1117620 D 318167 CDS YP_749649.1 114562136 4277756 1118103..1118570 1 NC_008345.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: son:SO1112 bacterioferritin subunit 1; bacterioferritin 1118570 4277756 Sfri_0958 Shewanella frigidimarina NCIMB 400 bacterioferritin YP_749649.1 1118103 D 318167 CDS YP_749650.1 114562137 4277757 1118895..1119368 1 NC_008345.1 KEGG: ppr:PBPRA2528 hypothetical protein; hypothetical protein 1119368 4277757 Sfri_0959 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749650.1 1118895 D 318167 CDS YP_749651.1 114562138 4277758 1119370..1119888 1 NC_008345.1 PFAM: Ankyrin; KEGG: ppr:PBPRA2368 hypothetical protein; ankyrin 1119888 4277758 Sfri_0960 Shewanella frigidimarina NCIMB 400 ankyrin YP_749651.1 1119370 D 318167 CDS YP_749652.1 114562139 4277759 1120087..1121166 1 NC_008345.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1121166 4277759 Sfri_0961 Shewanella frigidimarina NCIMB 400 DNA polymerase IV YP_749652.1 1120087 D 318167 CDS YP_749653.1 114562140 4277760 complement(1121276..1122739) 1 NC_008345.1 KEGG: son:SO1115 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase 1122739 4277760 Sfri_0962 Shewanella frigidimarina NCIMB 400 aminoacyl-histidine dipeptidase YP_749653.1 1121276 R 318167 CDS YP_749654.1 114562141 4277761 1122922..1124460 1 NC_008345.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: son:SO1117 cytosol aminopeptidase, putative; peptidase M17, leucyl aminopeptidase domain-containing protein 1124460 4277761 Sfri_0963 Shewanella frigidimarina NCIMB 400 peptidase M17, leucyl aminopeptidase domain-containing protein YP_749654.1 1122922 D 318167 CDS YP_749655.1 114562142 4277762 1124724..1124903 1 NC_008345.1 hypothetical protein 1124903 4277762 Sfri_0964 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749655.1 1124724 D 318167 CDS YP_749656.1 114562143 4277763 1125346..1126635 1 NC_008345.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: son:SO1120 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 1126635 4277763 Sfri_0965 Shewanella frigidimarina NCIMB 400 xanthine/uracil/vitamin C permease YP_749656.1 1125346 D 318167 CDS YP_749657.1 114562144 4277764 1126919..1128028 1 NC_008345.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1128028 4277764 Sfri_0966 Shewanella frigidimarina NCIMB 400 gamma-glutamyl kinase YP_749657.1 1126919 D 318167 CDS YP_749658.1 114562145 4277765 1128039..1129313 1 NC_008345.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1129313 proA 4277765 proA Shewanella frigidimarina NCIMB 400 gamma-glutamyl phosphate reductase YP_749658.1 1128039 D 318167 CDS YP_749659.1 114562146 4277766 complement(1129396..1129731) 1 NC_008345.1 KEGG: son:SO1123 hypothetical protein; hypothetical protein 1129731 4277766 Sfri_0968 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749659.1 1129396 R 318167 CDS YP_749660.1 114562147 4277767 1130511..1132427 1 NC_008345.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1132427 dnaK 4277767 dnaK Shewanella frigidimarina NCIMB 400 molecular chaperone DnaK YP_749660.1 1130511 D 318167 CDS YP_749661.1 114562148 4277768 1132539..1133669 1 NC_008345.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1133669 4277768 Sfri_0970 Shewanella frigidimarina NCIMB 400 chaperone protein DnaJ YP_749661.1 1132539 D 318167 CDS YP_749662.1 114562149 4277769 1133772..1135004 1 NC_008345.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1136 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 1135004 4277769 Sfri_0971 Shewanella frigidimarina NCIMB 400 DEAD/DEAH box helicase YP_749662.1 1133772 D 318167 CDS YP_749663.1 114562150 4277770 1135127..1135933 1 NC_008345.1 PFAM: peptidase M48, Ste24p; KEGG: son:SO1137 hypothetical protein; peptidase M48, Ste24p 1135933 4277770 Sfri_0972 Shewanella frigidimarina NCIMB 400 peptidase M48, Ste24p YP_749663.1 1135127 D 318167 CDS YP_749664.1 114562151 4278190 1136013..1136630 1 NC_008345.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1139 peptidyl-prolyl cis-trans isomerase FklB; peptidylprolyl isomerase, FKBP-type 1136630 4278190 Sfri_0973 Shewanella frigidimarina NCIMB 400 peptidylprolyl isomerase, FKBP-type YP_749664.1 1136013 D 318167 CDS YP_749665.1 114562152 4278191 1136714..1137526 1 NC_008345.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1137526 4278191 Sfri_0974 Shewanella frigidimarina NCIMB 400 dihydrodipicolinate reductase YP_749665.1 1136714 D 318167 CDS YP_749666.1 114562153 4278192 1137713..1138858 1 NC_008345.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1138858 4278192 Sfri_0975 Shewanella frigidimarina NCIMB 400 carbamoyl phosphate synthase small subunit YP_749666.1 1137713 D 318167 CDS YP_749667.1 114562154 4278193 1138882..1142103 1 NC_008345.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1142103 carB 4278193 carB Shewanella frigidimarina NCIMB 400 carbamoyl phosphate synthase large subunit YP_749667.1 1138882 D 318167 CDS YP_749668.1 114562155 4278194 1142334..1142810 1 NC_008345.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO1191 transcription elongation factor GreA; transcription elongation factor GreA 1142810 4278194 Sfri_0977 Shewanella frigidimarina NCIMB 400 transcription elongation factor GreA YP_749668.1 1142334 D 318167 CDS YP_749669.1 114562156 4278195 1143257..1143892 1 NC_008345.1 KEGG: ppr:PBPRB0499 hypothetical protein; hypothetical protein 1143892 4278195 Sfri_0978 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749669.1 1143257 D 318167 CDS YP_749670.1 114562157 4278196 1144029..1145840 1 NC_008345.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1145840 secD 4278196 secD Shewanella frigidimarina NCIMB 400 preprotein translocase subunit SecD YP_749670.1 1144029 D 318167 CDS YP_749671.1 114562158 4278197 1145845..1146768 1 NC_008345.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1146768 secF 4278197 secF Shewanella frigidimarina NCIMB 400 preprotein translocase subunit SecF YP_749671.1 1145845 D 318167 CDS YP_749672.1 114562159 4278198 complement(1146836..1147135) 1 NC_008345.1 PFAM: protein of unknown function UPF0044; KEGG: son:SO1195 putative RNA-binding protein containing KH domain; hypothetical protein 1147135 4278198 Sfri_0981 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749672.1 1146836 R 318167 CDS YP_749673.1 114562160 4278199 1147226..1147855 1 NC_008345.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 1147855 rrmJ 4278199 rrmJ Shewanella frigidimarina NCIMB 400 23S rRNA methyltransferase J YP_749673.1 1147226 D 318167 CDS YP_749674.1 114562161 4278200 1147902..1149875 1 NC_008345.1 KEGG: son:SO1197 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 1149875 4278200 Sfri_0983 Shewanella frigidimarina NCIMB 400 ATP-dependent metalloprotease FtsH YP_749674.1 1147902 D 318167 CDS YP_749675.1 114562162 4278201 1149915..1150778 1 NC_008345.1 KEGG: son:SO1198 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 1150778 4278201 Sfri_0984 Shewanella frigidimarina NCIMB 400 dihydropteroate synthase YP_749675.1 1149915 D 318167 CDS YP_749676.1 114562163 4278202 1150833..1152170 1 NC_008345.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1152170 glmM 4278202 glmM Shewanella frigidimarina NCIMB 400 phosphoglucosamine mutase YP_749676.1 1150833 D 318167 CDS YP_749677.1 114562164 4278203 1152310..1153092 1 NC_008345.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1153092 4278203 Sfri_0986 Shewanella frigidimarina NCIMB 400 triosephosphate isomerase YP_749677.1 1152310 D 318167 CDS YP_749678.1 114562165 4278204 1153097..1153432 1 NC_008345.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: son:SO1201 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 1153432 secG 4278204 secG Shewanella frigidimarina NCIMB 400 preprotein translocase subunit SecG YP_749678.1 1153097 D 318167 CDS YP_749679.1 114562166 4278205 1153817..1154314 1 NC_008345.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1154314 4278205 Sfri_0988 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749679.1 1153817 D 318167 CDS YP_749680.1 114562167 4278206 1154346..1155845 1 NC_008345.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1155845 nusA 4278206 nusA Shewanella frigidimarina NCIMB 400 transcription elongation factor NusA YP_749680.1 1154346 D 318167 CDS YP_749681.1 114562168 4278207 1155871..1158516 1 NC_008345.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1158516 infB 4278207 infB Shewanella frigidimarina NCIMB 400 translation initiation factor IF-2 YP_749681.1 1155871 D 318167 CDS YP_749682.1 114562169 4278365 1158583..1159014 1 NC_008345.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1159014 rbfA 4278365 rbfA Shewanella frigidimarina NCIMB 400 ribosome-binding factor A YP_749682.1 1158583 D 318167 CDS YP_749683.1 114562170 4278366 1159014..1159967 1 NC_008345.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1159967 truB 4278366 truB Shewanella frigidimarina NCIMB 400 tRNA pseudouridine synthase B YP_749683.1 1159014 D 318167 CDS YP_749684.1 114562171 4278367 1160109..1160378 1 NC_008345.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1160378 rpsO 4278367 rpsO Shewanella frigidimarina NCIMB 400 30S ribosomal protein S15 YP_749684.1 1160109 D 318167 CDS YP_749685.1 114562172 4278368 complement(1161509..1163545) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1208 GGDEF domain protein; diguanylate cyclase/phosphodiesterase 1163545 4278368 Sfri_0994 Shewanella frigidimarina NCIMB 400 diguanylate cyclase/phosphodiesterase YP_749685.1 1161509 R 318167 CDS YP_749686.1 114562173 4278369 1163942..1166038 1 NC_008345.1 KEGG: son:SO1209 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 1166038 4278369 Sfri_0995 Shewanella frigidimarina NCIMB 400 polynucleotide phosphorylase/polyadenylase YP_749686.1 1163942 D 318167 CDS YP_749687.1 114562174 4278370 1166185..1167096 1 NC_008345.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 1167096 4278370 Sfri_0996 Shewanella frigidimarina NCIMB 400 lipoprotein NlpI YP_749687.1 1166185 D 318167 CDS YP_749688.1 114562175 4278371 1167173..1168753 1 NC_008345.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1168753 prfC 4278371 prfC Shewanella frigidimarina NCIMB 400 peptide chain release factor 3 YP_749688.1 1167173 D 318167 CDS YP_749689.1 114562176 4278372 1168835..1169035 1 NC_008345.1 hypothetical protein 1169035 4278372 Sfri_0998 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749689.1 1168835 D 318167 CDS YP_749690.1 114562177 4278373 1169028..1169789 1 NC_008345.1 PFAM: TatD-related deoxyribonuclease; KEGG: son:SO1213 hydrolase, TatD family; TatD-related deoxyribonuclease 1169789 4278373 Sfri_0999 Shewanella frigidimarina NCIMB 400 TatD-related deoxyribonuclease YP_749690.1 1169028 D 318167 CDS YP_749691.1 114562178 4278374 1169967..1171229 1 NC_008345.1 TIGRFAM: nucleoside transporter; PFAM: Na dependent nucleoside transporter; nucleoside recognition domain protein; Na dependent nucleoside transporter domain protein; KEGG: son:SO1214 NupC family protein; nucleoside transporter 1171229 4278374 Sfri_1000 Shewanella frigidimarina NCIMB 400 nucleoside transporter YP_749691.1 1169967 D 318167 CDS YP_749692.1 114562179 4278375 1171592..1172431 1 NC_008345.1 PFAM: nucleoside-specific channel-forming protein, Tsx; KEGG: son:SO1215 outer membrane protein OmpK, putative; nucleoside-specific channel-forming protein, Tsx 1172431 4278375 Sfri_1001 Shewanella frigidimarina NCIMB 400 nucleoside-specific channel-forming protein, Tsx YP_749692.1 1171592 D 318167 CDS YP_749693.1 114562180 4278376 1172811..1173584 1 NC_008345.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1173584 4278376 Sfri_1002 Shewanella frigidimarina NCIMB 400 deoxyribose-phosphate aldolase YP_749693.1 1172811 D 318167 CDS YP_749694.1 114562181 4278377 1173712..1175043 1 NC_008345.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 1175043 deoA 4278377 deoA Shewanella frigidimarina NCIMB 400 thymidine phosphorylase YP_749694.1 1173712 D 318167 CDS YP_749695.1 114562182 4278378 1175056..1176273 1 NC_008345.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1176273 4278378 Sfri_1004 Shewanella frigidimarina NCIMB 400 phosphopentomutase YP_749695.1 1175056 D 318167 CDS YP_749696.1 114562183 4278379 1176375..1177085 1 NC_008345.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1177085 deoD 4278379 deoD Shewanella frigidimarina NCIMB 400 purine nucleoside phosphorylase YP_749696.1 1176375 D 318167 CDS YP_749697.1 114562184 4278380 complement(1177161..1177853) 1 NC_008345.1 KEGG: son:SO1222 membrane protein; membrane protein 1177853 4278380 Sfri_1006 Shewanella frigidimarina NCIMB 400 membrane protein YP_749697.1 1177161 R 318167 CDS YP_749698.1 114562185 4278381 1178016..1179002 1 NC_008345.1 KEGG: son:SO1223 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB 1179002 4278381 Sfri_1007 Shewanella frigidimarina NCIMB 400 phosphoserine phosphatase SerB YP_749698.1 1178016 D 318167 CDS YP_749699.1 114562186 4277123 1179121..1180029 1 NC_008345.1 KEGG: son:SO1224 hypothetical protein; hypothetical protein 1180029 4277123 Sfri_1008 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749699.1 1179121 D 318167 CDS YP_749700.1 114562187 4277124 complement(1180179..1182563) 1 NC_008345.1 PFAM: type IV pilus assembly PilZ; KEGG: son:SO1225 hypothetical protein; type IV pilus assembly PilZ 1182563 4277124 Sfri_1009 Shewanella frigidimarina NCIMB 400 type IV pilus assembly PilZ YP_749700.1 1180179 R 318167 CDS YP_749701.1 114562188 4277125 1182995..1184374 1 NC_008345.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1184374 4277125 Sfri_1010 Shewanella frigidimarina NCIMB 400 DNA repair protein RadA YP_749701.1 1182995 D 318167 CDS YP_749702.1 114562189 4277126 complement(1184464..1184829) 1 NC_008345.1 PFAM: type IV pilus assembly PilZ; KEGG: son:SO1227 hypothetical protein; type IV pilus assembly PilZ 1184829 4277126 Sfri_1011 Shewanella frigidimarina NCIMB 400 type IV pilus assembly PilZ YP_749702.1 1184464 R 318167 CDS YP_749703.1 114562190 4277127 complement(1184987..1186339) 1 NC_008345.1 PFAM: nucleoside recognition domain protein; KEGG: son:SO1245 hypothetical protein; nucleoside recognition domain-containing protein 1186339 4277127 Sfri_1012 Shewanella frigidimarina NCIMB 400 nucleoside recognition domain-containing protein YP_749703.1 1184987 R 318167 CDS YP_749704.1 114562191 4277128 complement(1186708..1187649) 1 NC_008345.1 PFAM: peptidase U32; KEGG: son:SO1248 hypothetical peptidase; peptidase U32 1187649 4277128 Sfri_1013 Shewanella frigidimarina NCIMB 400 peptidase U32 YP_749704.1 1186708 R 318167 CDS YP_749705.1 114562192 4277129 complement(1187659..1188660) 1 NC_008345.1 PFAM: peptidase U32; KEGG: son:SO1249 peptidase, U32 family; peptidase U32 1188660 4277129 Sfri_1014 Shewanella frigidimarina NCIMB 400 peptidase U32 YP_749705.1 1187659 R 318167 CDS YP_749706.1 114562193 4277130 1188801..1189298 1 NC_008345.1 KEGG: son:SO1250 hypothetical protein; hypothetical protein 1189298 4277130 Sfri_1015 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749706.1 1188801 D 318167 CDS YP_749707.1 114562194 4277131 complement(1189402..1189569) 1 NC_008345.1 KEGG: son:SO1251 ferredoxin, 4Fe-4S; ferredoxin, 4Fe-4S 1189569 4277131 Sfri_1016 Shewanella frigidimarina NCIMB 400 ferredoxin, 4Fe-4S YP_749707.1 1189402 R 318167 CDS YP_749708.1 114562195 4277132 complement(1189733..1191193) 1 NC_008345.1 KEGG: rfr:Rfer_1881 Ig-like, group 2; Ig-like, group 2 1191193 4277132 Sfri_1017 Shewanella frigidimarina NCIMB 400 Ig-like, group 2 YP_749708.1 1189733 R 318167 CDS YP_749709.1 114562196 4277133 complement(1191486..1194164) 1 NC_008345.1 PFAM: Ig domain protein, group 2 domain protein; KEGG: lil:LA3075 surface protein Lk90-like protein; Ig domain-containing protein 1194164 4277133 Sfri_1018 Shewanella frigidimarina NCIMB 400 Ig domain-containing protein YP_749709.1 1191486 R 318167 CDS YP_749710.1 114562197 4277134 1194719..1197328 1 NC_008345.1 KEGG: rfr:Rfer_3548 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 1197328 4277134 Sfri_1019 Shewanella frigidimarina NCIMB 400 PAS/PAC sensor hybrid histidine kinase YP_749710.1 1194719 D 318167 CDS YP_749711.1 114562198 4277135 1197328..1198878 1 NC_008345.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: gme:Gmet_2223 transcriptional regulator, NifA subfamily, fis family; Fis family two component sigma-54-specific transcriptional regulator 1198878 4277135 Sfri_1020 Shewanella frigidimarina NCIMB 400 Fis family two component sigma-54-specific transcriptional regulator YP_749711.1 1197328 D 318167 CDS YP_749712.1 114562199 4277136 complement(1199071..1199328) 1 NC_008345.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1251 ferredoxin, 4Fe-4S; 4Fe-4S ferredoxin 1199328 4277136 Sfri_1021 Shewanella frigidimarina NCIMB 400 4Fe-4S ferredoxin YP_749712.1 1199071 R 318167 CDS YP_749713.1 114562200 4277137 complement(1199341..1200705) 1 NC_008345.1 PFAM: peptidase U32; KEGG: son:SO1252 peptidase, U32 family; peptidase U32 1200705 4277137 Sfri_1022 Shewanella frigidimarina NCIMB 400 peptidase U32 YP_749713.1 1199341 R 318167 CDS YP_749714.1 114562201 4277138 1200953..1201795 1 NC_008345.1 KEGG: son:SO1254 hypothetical protein; putative signal transduction protein 1201795 4277138 Sfri_1023 Shewanella frigidimarina NCIMB 400 putative signal transduction protein YP_749714.1 1200953 D 318167 CDS YP_749715.1 114562202 4277139 1201920..1203422 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO1255 cyclic nucleotide phosphodiesterase, putative; diguanylate cyclase/phosphodiesterase 1203422 4277139 Sfri_1024 Shewanella frigidimarina NCIMB 400 diguanylate cyclase/phosphodiesterase YP_749715.1 1201920 D 318167 CDS YP_749716.1 114562203 4277140 complement(1203488..1203919) 1 NC_008345.1 PFAM: thioesterase superfamily protein; KEGG: son:SO1256 hypothetical 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 1203919 4277140 Sfri_1025 Shewanella frigidimarina NCIMB 400 thioesterase superfamily protein YP_749716.1 1203488 R 318167 CDS YP_749717.1 114562204 4277840 complement(1203954..1204766) 1 NC_008345.1 KEGG: son:SO1260 hypothetical amino acid ABC transporter; amino acid ABC transporter 1204766 4277840 Sfri_1026 Shewanella frigidimarina NCIMB 400 amino acid ABC transporter YP_749717.1 1203954 R 318167 CDS YP_749718.1 114562205 4277841 complement(1205109..1208939) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: bca:BCE5479 sensory box/GGDEF family protein; diguanylate cyclase/phosphodiesterase 1208939 4277841 Sfri_1027 Shewanella frigidimarina NCIMB 400 diguanylate cyclase/phosphodiesterase YP_749718.1 1205109 R 318167 CDS YP_749719.1 114562206 4277842 complement(1209463..1209936) 1 NC_008345.1 PFAM: protein of unknown function DUF88; KEGG: son:SO3490 hypothetical protein; hypothetical protein 1209936 4277842 Sfri_1028 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749719.1 1209463 R 318167 CDS YP_749720.1 114562207 4277843 complement(1209954..1213058) 1 NC_008345.1 PFAM: acriflavin resistance protein; KEGG: son:SO3484 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 1213058 4277843 Sfri_1029 Shewanella frigidimarina NCIMB 400 acriflavin resistance protein YP_749720.1 1209954 R 318167 CDS YP_749721.1 114562208 4277844 complement(1213058..1214155) 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3483 HlyD family secretion protein; RND family efflux transporter MFP subunit 1214155 4277844 Sfri_1030 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_749721.1 1213058 R 318167 CDS YP_749722.1 114562209 4277845 complement(1214419..1215654) 1 NC_008345.1 KEGG: ppr:PBPRA1873 hypothetical protein; hypothetical protein 1215654 4277845 Sfri_1031 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749722.1 1214419 R 318167 CDS YP_749723.1 114562210 4277846 complement(1215943..1217610) 1 NC_008345.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1217610 4277846 Sfri_1032 Shewanella frigidimarina NCIMB 400 putative ABC transporter ATP-binding protein YP_749723.1 1215943 R 318167 CDS YP_749724.1 114562211 4277847 1217872..1219125 1 NC_008345.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1219125 glyA 4277847 glyA Shewanella frigidimarina NCIMB 400 serine hydroxymethyltransferase YP_749724.1 1217872 D 318167 CDS YP_749725.1 114562212 4277848 1219240..1219689 1 NC_008345.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone domain protein; KEGG: son:SO3470 ATP-cone domain protein; transcriptional regulator NrdR 1219689 nrdR 4277848 nrdR Shewanella frigidimarina NCIMB 400 transcriptional regulator NrdR YP_749725.1 1219240 D 318167 CDS YP_749726.1 114562213 4277849 1219754..1220899 1 NC_008345.1 KEGG: son:SO3469 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 1220899 4277849 Sfri_1035 Shewanella frigidimarina NCIMB 400 riboflavin biosynthesis protein RibD YP_749726.1 1219754 D 318167 CDS YP_749727.1 114562214 4277850 1220964..1221623 1 NC_008345.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1221623 4277850 Sfri_1036 Shewanella frigidimarina NCIMB 400 riboflavin synthase subunit alpha YP_749727.1 1220964 D 318167 CDS YP_749728.1 114562215 4277851 1221748..1222851 1 NC_008345.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: son:SO3467 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1222851 4277851 Sfri_1037 Shewanella frigidimarina NCIMB 400 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_749728.1 1221748 D 318167 CDS YP_749729.1 114562216 4277852 1222975..1223451 1 NC_008345.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1223451 ribH 4277852 ribH Shewanella frigidimarina NCIMB 400 6,7-dimethyl-8-ribityllumazine synthase YP_749729.1 1222975 D 318167 CDS YP_749730.1 114562217 4277853 1223465..1223869 1 NC_008345.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1223869 nusB 4277853 nusB Shewanella frigidimarina NCIMB 400 transcription antitermination protein NusB YP_749730.1 1223465 D 318167 CDS YP_749731.1 114562218 4277854 1223957..1224913 1 NC_008345.1 KEGG: son:SO3464 thiamin-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 1224913 4277854 Sfri_1040 Shewanella frigidimarina NCIMB 400 thiamine-monophosphate kinase YP_749731.1 1223957 D 318167 CDS YP_749732.1 114562219 4277855 1224924..1225415 1 NC_008345.1 PFAM: phosphatidylglycerophosphatase A; KEGG: son:SO3463 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase 1225415 4277855 Sfri_1041 Shewanella frigidimarina NCIMB 400 phosphatidylglycerophosphatase YP_749732.1 1224924 D 318167 CDS YP_749733.1 114562220 4277856 complement(1225547..1226689) 1 NC_008345.1 KEGG: son:SO2460 hypothetical protein; hypothetical protein 1226689 4277856 Sfri_1042 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749733.1 1225547 R 318167 CDS YP_749734.1 114562221 4278208 complement(1226761..1228419) 1 NC_008345.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: son:SO3462 DNA repair protein RecN; recombination and repair protein 1228419 4278208 Sfri_1043 Shewanella frigidimarina NCIMB 400 recombination and repair protein YP_749734.1 1226761 R 318167 CDS YP_749735.1 114562222 4278209 complement(1228548..1229516) 1 NC_008345.1 PFAM: Auxin Efflux Carrier; KEGG: son:SO3461 transporter, putative; auxin efflux carrier 1229516 4278209 Sfri_1044 Shewanella frigidimarina NCIMB 400 auxin efflux carrier YP_749735.1 1228548 R 318167 CDS YP_749736.1 114562223 4278210 complement(1229605..1229805) 1 NC_008345.1 KEGG: son:SO3459 hypothetical protein; hypothetical protein 1229805 4278210 Sfri_1045 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749736.1 1229605 R 318167 CDS YP_749737.1 114562224 4278211 complement(1229890..1230495) 1 NC_008345.1 PFAM: protein of unknown function DUF416; KEGG: son:SO3458 hypothetical protein; hypothetical protein 1230495 4278211 Sfri_1046 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749737.1 1229890 R 318167 CDS YP_749738.1 114562225 4278212 complement(1230476..1233334) 1 NC_008345.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 1233334 4278212 Sfri_1047 Shewanella frigidimarina NCIMB 400 hybrid sensory histidine kinase BarA YP_749738.1 1230476 R 318167 CDS YP_749739.1 114562226 4278213 1233437..1234804 1 NC_008345.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1234804 rumA 4278213 rumA Shewanella frigidimarina NCIMB 400 23S rRNA 5-methyluridine methyltransferase YP_749739.1 1233437 D 318167 CDS YP_749740.1 114562227 4278214 1234926..1237196 1 NC_008345.1 KEGG: son:SO3455 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1237196 4278214 Sfri_1049 Shewanella frigidimarina NCIMB 400 (p)ppGpp synthetase I SpoT/RelA YP_749740.1 1234926 D 318167 CDS YP_749741.1 114562228 4278215 1237288..1238109 1 NC_008345.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1238109 mazG 4278215 mazG Shewanella frigidimarina NCIMB 400 nucleoside triphosphate pyrophosphohydrolase YP_749741.1 1237288 D 318167 CDS YP_749742.1 114562229 4278216 1238224..1239861 1 NC_008345.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1239861 pyrG 4278216 pyrG Shewanella frigidimarina NCIMB 400 CTP synthetase YP_749742.1 1238224 D 318167 CDS YP_749743.1 114562230 4278217 1240136..1241437 1 NC_008345.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1241437 eno 4278217 eno Shewanella frigidimarina NCIMB 400 phosphopyruvate hydratase YP_749743.1 1240136 D 318167 CDS YP_749744.1 114562231 4278218 1241538..1241840 1 NC_008345.1 PFAM: Septum formation initiator; KEGG: son:SO3439 cell division protein FtsB; septum formation initiator 1241840 4278218 Sfri_1053 Shewanella frigidimarina NCIMB 400 septum formation initiator YP_749744.1 1241538 D 318167 CDS YP_749745.1 114562232 4278219 1241903..1242601 1 NC_008345.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1242601 ispD 4278219 ispD Shewanella frigidimarina NCIMB 400 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_749745.1 1241903 D 318167 CDS YP_749746.1 114562233 4278220 1242663..1243142 1 NC_008345.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1243142 ispF 4278220 ispF Shewanella frigidimarina NCIMB 400 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_749746.1 1242663 D 318167 CDS YP_749747.1 114562234 4278221 1243170..1244243 1 NC_008345.1 PFAM: tRNA pseudouridine synthase D, TruD; KEGG: son:SO3436 tRNA pseudouridine synthase D; pseudouridylate synthase 1244243 4278221 Sfri_1056 Shewanella frigidimarina NCIMB 400 pseudouridylate synthase YP_749747.1 1243170 D 318167 CDS YP_749748.1 114562235 4278222 1244247..1244996 1 NC_008345.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1244996 surE 4278222 surE Shewanella frigidimarina NCIMB 400 stationary phase survival protein SurE YP_749748.1 1244247 D 318167 CDS YP_749749.1 114562236 4278223 1244993..1245628 1 NC_008345.1 KEGG: son:SO3434 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1245628 4278223 Sfri_1058 Shewanella frigidimarina NCIMB 400 protein-L-isoaspartate O-methyltransferase YP_749749.1 1244993 D 318167 CDS YP_749750.1 114562237 4278224 1245732..1246661 1 NC_008345.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: son:SO3433 lipoprotein NlpD; peptidase M23B 1246661 4278224 Sfri_1059 Shewanella frigidimarina NCIMB 400 peptidase M23B YP_749750.1 1245732 D 318167 CDS YP_749751.1 114562238 4278225 1246740..1247711 1 NC_008345.1 TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: son:SO3432 RNA polymerase sigma-38 factor; RNA polymerase subunit sigma 28 1247711 4278225 Sfri_1060 Shewanella frigidimarina NCIMB 400 RNA polymerase subunit sigma 28 YP_749751.1 1246740 D 318167 CDS YP_749752.1 114562239 4277823 complement(1248096..1250681) 1 NC_008345.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1250681 4277823 Sfri_1061 Shewanella frigidimarina NCIMB 400 DNA mismatch repair protein MutS YP_749752.1 1248096 R 318167 CDS YP_749753.1 114562240 4277824 1250967..1252031 1 NC_008345.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1252031 recA 4277824 recA Shewanella frigidimarina NCIMB 400 recombinase A YP_749753.1 1250967 D 318167 CDS YP_749754.1 114562241 4277825 1252831..1255455 1 NC_008345.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1255455 alaS 4277825 alaS Shewanella frigidimarina NCIMB 400 alanyl-tRNA synthetase YP_749754.1 1252831 D 318167 CDS YP_749755.1 114562242 4277826 1255913..1256110 1 NC_008345.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1256110 4277826 Sfri_1064 Shewanella frigidimarina NCIMB 400 carbon storage regulator YP_749755.1 1255913 D 318167 CDS YP_749756.1 114562243 4277827 1258384..1258626 1 NC_008345.1 TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: vvy:VV2800 oxaloacetate decarboxylase, gamma subunit; sodium pump decarboxylase subunit gamma 1258626 4277827 Sfri_1065 Shewanella frigidimarina NCIMB 400 sodium pump decarboxylase subunit gamma YP_749756.1 1258384 D 318167 CDS YP_749757.1 114562244 4277828 1258640..1260418 1 NC_008345.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 1260418 4277828 Sfri_1066 Shewanella frigidimarina NCIMB 400 oxaloacetate decarboxylase YP_749757.1 1258640 D 318167 CDS YP_749758.1 114562245 4277829 1260428..1261558 1 NC_008345.1 KEGG: vpa:VP2543 oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; sodium ion-translocating decarboxylase subunit beta 1261558 4277829 Sfri_1067 Shewanella frigidimarina NCIMB 400 sodium ion-translocating decarboxylase subunit beta YP_749758.1 1260428 D 318167 CDS YP_749759.1 114562246 4277830 1261894..1263165 1 NC_008345.1 KEGG: cps:CPS_3313 putative lipoprotein; putative lipoprotein 1263165 4277830 Sfri_1068 Shewanella frigidimarina NCIMB 400 putative lipoprotein YP_749759.1 1261894 D 318167 CDS YP_749760.1 114562247 4277831 complement(1263247..1264497) 1 NC_008345.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO3562 proton/glutamate symporter, putative; sodium:dicarboxylate symporter 1264497 4277831 Sfri_1069 Shewanella frigidimarina NCIMB 400 sodium:dicarboxylate symporter YP_749760.1 1263247 R 318167 CDS YP_749761.1 114562248 4277832 1265066..1265494 1 NC_008345.1 KEGG: son:SO3561 hypothetical protein; hypothetical protein 1265494 4277832 Sfri_1070 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749761.1 1265066 D 318167 CDS YP_749762.1 114562249 4277833 1265573..1268404 1 NC_008345.1 PFAM: peptidase M16 domain protein; KEGG: son:SO3560 peptidase, M16 family; peptidase M16 domain-containing protein 1268404 4277833 Sfri_1071 Shewanella frigidimarina NCIMB 400 peptidase M16 domain-containing protein YP_749762.1 1265573 D 318167 CDS YP_749763.1 114562250 4277834 1268748..1270367 1 NC_008345.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 1270367 4277834 Sfri_1072 Shewanella frigidimarina NCIMB 400 glutamate--cysteine ligase YP_749763.1 1268748 D 318167 CDS YP_749764.1 114562251 4277835 1270370..1270804 1 NC_008345.1 KEGG: son:SO3558 hypothetical protein; hypothetical protein 1270804 4277835 Sfri_1073 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749764.1 1270370 D 318167 CDS YP_749765.1 114562252 4277836 1270992..1271609 1 NC_008345.1 KEGG: son:SO3557 hypothetical protein; hypothetical protein 1271609 4277836 Sfri_1074 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749765.1 1270992 D 318167 CDS YP_749766.1 114562253 4277837 complement(1271876..1272958) 1 NC_008345.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1272958 4277837 Sfri_1075 Shewanella frigidimarina NCIMB 400 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_749766.1 1271876 R 318167 CDS YP_749767.1 114562254 4277838 complement(1272958..1273449) 1 NC_008345.1 KEGG: son:SO3554 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 1273449 4277838 Sfri_1076 Shewanella frigidimarina NCIMB 400 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_749767.1 1272958 R 318167 CDS YP_749768.1 114562255 4277839 1273755..1275593 1 NC_008345.1 PFAM: von Willebrand factor, type A; KEGG: son:SO3552 von Willebrand factor type A domain protein; von Willebrand factor, type A 1275593 4277839 Sfri_1077 Shewanella frigidimarina NCIMB 400 von Willebrand factor, type A YP_749768.1 1273755 D 318167 CDS YP_749769.1 114562256 4277612 1275594..1276232 1 NC_008345.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO3551 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1276232 4277612 Sfri_1078 Shewanella frigidimarina NCIMB 400 ECF subfamily RNA polymerase sigma-24 factor YP_749769.1 1275594 D 318167 CDS YP_749770.1 114562257 4277613 1276229..1277077 1 NC_008345.1 KEGG: son:SO3550 hypothetical protein; hypothetical protein 1277077 4277613 Sfri_1079 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749770.1 1276229 D 318167 CDS YP_749771.1 114562258 4277614 1277280..1280564 1 NC_008345.1 PFAM: peptidase S41; WD40 domain protein beta Propeller; KEGG: son:SO3411 protease, putative; peptidase S41 1280564 4277614 Sfri_1080 Shewanella frigidimarina NCIMB 400 peptidase S41 YP_749771.1 1277280 D 318167 CDS YP_749772.1 114562259 4277615 complement(1280681..1281118) 1 NC_008345.1 PFAM: OsmC family protein; KEGG: son:SO3409 OsmC/Ohr family protein; OsmC family protein 1281118 4277615 Sfri_1081 Shewanella frigidimarina NCIMB 400 OsmC family protein YP_749772.1 1280681 R 318167 CDS YP_749773.1 114562260 4277616 1281394..1281669 1 NC_008345.1 hypothetical protein 1281669 4277616 Sfri_1082 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749773.1 1281394 D 318167 CDS YP_749774.1 114562261 4277617 complement(1281773..1282423) 1 NC_008345.1 PFAM: DSBA oxidoreductase; KEGG: ppr:PBPRB0337 hypothetical 2-hydroxychromene-2-carboxylateisomerase family protein; DSBA oxidoreductase 1282423 4277617 Sfri_1083 Shewanella frigidimarina NCIMB 400 DSBA oxidoreductase YP_749774.1 1281773 R 318167 CDS YP_749775.1 114562262 4277618 1282848..1283204 1 NC_008345.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein; sigma 54 modulation protein/ribosomal protein S30EA 1283204 4277618 Sfri_1084 Shewanella frigidimarina NCIMB 400 sigma 54 modulation protein/ribosomal protein S30EA YP_749775.1 1282848 D 318167 CDS YP_749776.1 114562263 4277619 complement(1283517..1284590) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cps:CPS_4684 GGDEF domain protein; diguanylate cyclase 1284590 4277619 Sfri_1085 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_749776.1 1283517 R 318167 CDS YP_749777.1 114562264 4277620 complement(1285125..1285850) 1 NC_008345.1 PFAM: protein of unknown function DUF28; KEGG: son:SO3401 hypothetical protein; hypothetical protein 1285850 4277620 Sfri_1086 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749777.1 1285125 R 318167 CDS YP_749778.1 114562265 4277621 1286405..1286716 1 NC_008345.1 KEGG: son:SO3395 hypothetical protein; hypothetical protein 1286716 4277621 Sfri_1087 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749778.1 1286405 D 318167 CDS YP_749779.1 114562266 4277622 complement(1286804..1287400) 1 NC_008345.1 PFAM: regulatory protein, TetR; KEGG: son:SO3393 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein 1287400 4277622 Sfri_1088 Shewanella frigidimarina NCIMB 400 transcriptional regulator, TetR family protein YP_749779.1 1286804 R 318167 CDS YP_749780.1 114562267 4277623 1287546..1288589 1 NC_008345.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ppr:PBPRB1366 putative NADH-dependent flavin oxidoreductase; NADH:flavin oxidoreductase 1288589 4277623 Sfri_1089 Shewanella frigidimarina NCIMB 400 NADH:flavin oxidoreductase YP_749780.1 1287546 D 318167 CDS YP_749781.1 114562268 4277624 1288828..1290153 1 NC_008345.1 PFAM: protein kinase; leucine-rich repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein, typical subtype; KEGG: son:SO4016 hypothetical protein; serine/threonine protein kinase 1290153 4277624 Sfri_1090 Shewanella frigidimarina NCIMB 400 serine/threonine protein kinase YP_749781.1 1288828 D 318167 CDS YP_749782.1 114562269 4277625 1290354..1290545 1 NC_008345.1 KEGG: bte:BTH_II1256 thioredoxin; hypothetical protein 1290545 4277625 Sfri_1091 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749782.1 1290354 D 318167 CDS YP_749783.1 114562270 4277626 1290796..1291140 1 NC_008345.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: cps:CPS_1298 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA 1291140 4277626 Sfri_1092 Shewanella frigidimarina NCIMB 400 alkylphosphonate utilization operon protein PhnA YP_749783.1 1290796 D 318167 CDS YP_749784.1 114562271 4277627 complement(1291785..1292393) 1 NC_008345.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: hhe:HH1827 hypothetical protein; Sel1 domain-containing protein 1292393 4277627 Sfri_1093 Shewanella frigidimarina NCIMB 400 Sel1 domain-containing protein YP_749784.1 1291785 R 318167 CDS YP_749785.1 114562272 4277628 complement(1293504..1293992) 1 NC_008345.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1293992 smpB 4277628 smpB Shewanella frigidimarina NCIMB 400 SsrA-binding protein YP_749785.1 1293504 R 318167 CDS YP_749786.1 114562273 4277629 1294245..1294679 1 NC_008345.1 PFAM: cyclase/dehydrase; KEGG: son:SO1474 hypothetical protein; cyclase/dehydrase 1294679 4277629 Sfri_1095 Shewanella frigidimarina NCIMB 400 cyclase/dehydrase YP_749786.1 1294245 D 318167 CDS YP_749787.1 114562274 4277159 1294672..1295007 1 NC_008345.1 PFAM: protein of unknown function UPF0125; KEGG: son:SO1475 hypothetical protein; hypothetical protein 1295007 4277159 Sfri_1096 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749787.1 1294672 D 318167 CDS YP_749788.1 114562275 4277160 complement(1295193..1295696) 1 NC_008345.1 PFAM: SmpA/OmlA domain protein; KEGG: son:SO1476 small protein A; SmpA/OmlA domain-containing protein 1295696 4277160 Sfri_1097 Shewanella frigidimarina NCIMB 400 SmpA/OmlA domain-containing protein YP_749788.1 1295193 R 318167 CDS YP_749789.1 114562276 4277161 1296011..1296850 1 NC_008345.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO1478 methylase, putative; uroporphyrin-III C/tetrapyrrole methyltransferase 1296850 4277161 Sfri_1098 Shewanella frigidimarina NCIMB 400 uroporphyrin-III C/tetrapyrrole methyltransferase YP_749789.1 1296011 D 318167 CDS YP_749790.1 114562277 4277162 1297165..1297377 1 NC_008345.1 KEGG: son:SO1479 hypothetical protein; hypothetical protein 1297377 4277162 Sfri_1099 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749790.1 1297165 D 318167 CDS YP_749791.1 114562278 4277163 1297400..1299130 1 NC_008345.1 KEGG: son:SO1480 GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 1299130 4277163 Sfri_1100 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_749791.1 1297400 D 318167 CDS YP_749792.1 114562279 4277164 1300467..1302119 1 NC_008345.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 1302119 4277164 Sfri_1101 Shewanella frigidimarina NCIMB 400 malate synthase YP_749792.1 1300467 D 318167 CDS YP_749793.1 114562280 4277165 1302210..1303526 1 NC_008345.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: son:SO1484 isocitrate lyase; isocitrate lyase 1303526 4277165 Sfri_1102 Shewanella frigidimarina NCIMB 400 isocitrate lyase YP_749793.1 1302210 D 318167 CDS YP_749794.1 114562281 4277166 1304050..1305504 1 NC_008345.1 PFAM: GAF domain protein; KEGG: son:SO3337 hypothetical protein; putative signal transduction protein 1305504 4277166 Sfri_1103 Shewanella frigidimarina NCIMB 400 putative signal transduction protein YP_749794.1 1304050 D 318167 CDS YP_749795.1 114562282 4277167 complement(1305614..1306219) 1 NC_008345.1 KEGG: son:SO3336 hypothetical protein; hypothetical protein 1306219 4277167 Sfri_1104 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749795.1 1305614 R 318167 CDS YP_749796.1 114562283 4277168 complement(1306269..1307093) 1 NC_008345.1 PFAM: protein of unknown function DUF980; KEGG: son:SO3335 hypothetical protein; hypothetical protein 1307093 4277168 Sfri_1105 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749796.1 1306269 R 318167 CDS YP_749797.1 114562284 4277169 complement(1307451..1307873) 1 NC_008345.1 KEGG: son:SO3332 transcriptional regulator, CopG family; CopG family transcriptional regulator 1307873 4277169 Sfri_1106 Shewanella frigidimarina NCIMB 400 CopG family transcriptional regulator YP_749797.1 1307451 R 318167 CDS YP_749798.1 114562285 4277170 complement(1307833..1308579) 1 NC_008345.1 KEGG: son:SO3331 hypothetical protein; hypothetical protein 1308579 4277170 Sfri_1107 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749798.1 1307833 R 318167 CDS YP_749799.1 114562286 4277171 1309353..1309568 1 NC_008345.1 KEGG: cps:CPS_4821 hypothetical protein; hypothetical protein 1309568 4277171 Sfri_1108 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749799.1 1309353 D 318167 CDS YP_749800.1 114562287 4277172 complement(1309638..1310171) 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3324 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1310171 4277172 Sfri_1109 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_749800.1 1309638 R 318167 CDS YP_749801.1 114562288 4277173 complement(1310200..1310502) 1 NC_008345.1 KEGG: son:SO3325 NrfJ-related protein; NrfJ-related protein 1310502 4277173 Sfri_1110 Shewanella frigidimarina NCIMB 400 NrfJ-related protein YP_749801.1 1310200 R 318167 CDS YP_749802.1 114562289 4277174 complement(1310693..1312429) 1 NC_008345.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: son:SO3317 5'-nucleotidase, putative; metallophosphoesterase 1312429 4277174 Sfri_1111 Shewanella frigidimarina NCIMB 400 metallophosphoesterase YP_749802.1 1310693 R 318167 CDS YP_749803.1 114562290 4277175 complement(1312652..1313734) 1 NC_008345.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: son:SO3316 hypothetical protein; hypothetical protein 1313734 4277175 Sfri_1112 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749803.1 1312652 R 318167 CDS YP_749804.1 114562291 4277034 1313849..1314970 1 NC_008345.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1314970 4277034 Sfri_1113 Shewanella frigidimarina NCIMB 400 ribosomal RNA large subunit methyltransferase N YP_749804.1 1313849 D 318167 CDS YP_749805.1 114562292 4277035 1315002..1315787 1 NC_008345.1 KEGG: son:SO3314 fimbrial biogenesis and twitching motility protein, putative; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1315787 4277035 Sfri_1114 Shewanella frigidimarina NCIMB 400 type IV pilus biogenesis/stability protein PilW YP_749805.1 1315002 D 318167 CDS YP_749806.1 114562293 4277036 1315787..1316764 1 NC_008345.1 KEGG: son:SO3313 hypothetical protein; hypothetical protein 1316764 4277036 Sfri_1115 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749806.1 1315787 D 318167 CDS YP_749807.1 114562294 4277037 1316796..1317911 1 NC_008345.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1317911 ispG 4277037 ispG Shewanella frigidimarina NCIMB 400 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_749807.1 1316796 D 318167 CDS YP_749808.1 114562295 4277038 1318010..1319284 1 NC_008345.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1319284 hisS 4277038 hisS Shewanella frigidimarina NCIMB 400 histidyl-tRNA synthetase YP_749808.1 1318010 D 318167 CDS YP_749809.1 114562296 4277039 1319311..1319931 1 NC_008345.1 KEGG: son:SO3310 hypothetical protein; hypothetical protein 1319931 4277039 Sfri_1118 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749809.1 1319311 D 318167 CDS YP_749810.1 114562297 4277040 1319944..1321179 1 NC_008345.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1321179 4277040 Sfri_1119 Shewanella frigidimarina NCIMB 400 outer membrane protein assembly complex subunit YfgL YP_749810.1 1319944 D 318167 CDS YP_749811.1 114562298 4277041 1321283..1322749 1 NC_008345.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1322749 engA 4277041 engA Shewanella frigidimarina NCIMB 400 GTP-binding protein EngA YP_749811.1 1321283 D 318167 CDS YP_749812.1 114562299 4277042 1322949..1323158 1 NC_008345.1 KEGG: cps:CPS_0070 hypothetical protein; hypothetical protein 1323158 4277042 Sfri_1121 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749812.1 1322949 D 318167 CDS YP_749813.1 114562300 4277043 complement(1323175..1323576) 1 NC_008345.1 hypothetical protein 1323576 4277043 Sfri_1122 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749813.1 1323175 R 318167 CDS YP_749814.1 114562301 4277044 1323714..1324280 1 NC_008345.1 PFAM: cytochrome B561; KEGG: bba:Bd1410 putative Ni,Fe-hydrogenase I cytochrome b subunit; cytochrome B561 1324280 4277044 Sfri_1123 Shewanella frigidimarina NCIMB 400 cytochrome B561 YP_749814.1 1323714 D 318167 CDS YP_749815.1 114562302 4277045 1324364..1324909 1 NC_008345.1 PFAM: Redoxin domain protein; KEGG: son:SO2100 thioredoxin family protein; redoxin domain-containing protein 1324909 4277045 Sfri_1124 Shewanella frigidimarina NCIMB 400 redoxin domain-containing protein YP_749815.1 1324364 D 318167 CDS YP_749816.1 114562303 4277046 1324914..1325153 1 NC_008345.1 KEGG: son:SO2101 lipoprotein, putative; putative lipoprotein 1325153 4277046 Sfri_1125 Shewanella frigidimarina NCIMB 400 putative lipoprotein YP_749816.1 1324914 D 318167 CDS YP_749817.1 114562304 4277047 1325144..1326442 1 NC_008345.1 KEGG: son:SO2102 hypothetical protein; hypothetical protein 1326442 4277047 Sfri_1126 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749817.1 1325144 D 318167 CDS YP_749818.1 114562305 4277048 1326499..1327395 1 NC_008345.1 PFAM: ApbE family lipoprotein; KEGG: son:SO2103 ApbE family protein; ApbE family lipoprotein 1327395 4277048 Sfri_1127 Shewanella frigidimarina NCIMB 400 ApbE family lipoprotein YP_749818.1 1326499 D 318167 CDS YP_749819.1 114562306 4277049 1327412..1328071 1 NC_008345.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2104 DNA-binding response regulator YgiX, putative; two component transcriptional regulator, winged helix family protein 1328071 4277049 Sfri_1128 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, winged helix family protein YP_749819.1 1327412 D 318167 CDS YP_749820.1 114562307 4277050 1328158..1329561 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2105 sensor protein YgiY, putative; periplasmic sensor signal transduction histidine kinase 1329561 4277050 Sfri_1129 Shewanella frigidimarina NCIMB 400 periplasmic sensor signal transduction histidine kinase YP_749820.1 1328158 D 318167 CDS YP_749821.1 114562308 4277051 complement(1329668..1331203) 1 NC_008345.1 KEGG: son:SO4649 hypothetical protein; hypothetical protein 1331203 4277051 Sfri_1130 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749821.1 1329668 R 318167 CDS YP_749822.1 114562309 4278032 complement(1331379..1332707) 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4648 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 1332707 4278032 Sfri_1131 Shewanella frigidimarina NCIMB 400 periplasmic sensor signal transduction histidine kinase YP_749822.1 1331379 R 318167 CDS YP_749823.1 114562310 4278033 complement(1332700..1333383) 1 NC_008345.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4647 DNA-binding response regulator; two component transcriptional regulator, winged helix family protein 1333383 4278033 Sfri_1132 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, winged helix family protein YP_749823.1 1332700 R 318167 CDS YP_749824.1 114562311 4278034 complement(1333387..1333743) 1 NC_008345.1 PFAM: Propeptide, PepSY amd peptidase M4; KEGG: son:SO4646 hypothetical protein; peptidase 1333743 4278034 Sfri_1133 Shewanella frigidimarina NCIMB 400 peptidase YP_749824.1 1333387 R 318167 CDS YP_749825.1 114562312 4278035 1334085..1334966 1 NC_008345.1 KEGG: son:SO4645 hypothetical protein; hypothetical protein 1334966 4278035 Sfri_1134 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749825.1 1334085 D 318167 CDS YP_749826.1 114562313 4278036 1335069..1335746 1 NC_008345.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: son:SO3969 OmpA family protein; OmpA/MotB domain-containing protein 1335746 4278036 Sfri_1135 Shewanella frigidimarina NCIMB 400 OmpA/MotB domain-containing protein YP_749826.1 1335069 D 318167 CDS YP_749827.1 114562314 4278037 complement(1335999..1337351) 1 NC_008345.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1337351 xseA 4278037 xseA Shewanella frigidimarina NCIMB 400 exodeoxyribonuclease VII large subunit YP_749827.1 1335999 R 318167 CDS YP_749828.1 114562315 4278038 1337458..1338924 1 NC_008345.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1338924 4278038 Sfri_1137 Shewanella frigidimarina NCIMB 400 inosine 5'-monophosphate dehydrogenase YP_749828.1 1337458 D 318167 CDS YP_749829.1 114562316 4278039 1339029..1340606 1 NC_008345.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1340606 guaA 4278039 guaA Shewanella frigidimarina NCIMB 400 GMP synthase YP_749829.1 1339029 D 318167 CDS YP_749830.1 114562317 4278040 1340706..1341275 1 NC_008345.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: son:SO3291 cytidine/deoxycytidylate deaminase family protein; zinc-binding CMP/dCMP deaminase 1341275 4278040 Sfri_1139 Shewanella frigidimarina NCIMB 400 zinc-binding CMP/dCMP deaminase YP_749830.1 1340706 D 318167 CDS YP_749831.1 114562318 4278041 complement(1341591..1343021) 1 NC_008345.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 1343021 4278041 Sfri_1140 Shewanella frigidimarina NCIMB 400 putative transglycosylase YP_749831.1 1341591 R 318167 CDS YP_749832.1 114562319 4278042 1343377..1347258 1 NC_008345.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1347258 4278042 Sfri_1141 Shewanella frigidimarina NCIMB 400 phosphoribosylformylglycinamidine synthase YP_749832.1 1343377 D 318167 CDS YP_749833.1 114562320 4278043 1348398..1349954 1 NC_008345.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: son:SO3286 cytochrome bd-I oxidase subunit I; cytochrome bd ubiquinol oxidase, subunit I 1349954 4278043 Sfri_1142 Shewanella frigidimarina NCIMB 400 cytochrome bd ubiquinol oxidase, subunit I YP_749833.1 1348398 D 318167 CDS YP_749834.1 114562321 4278044 1349970..1351109 1 NC_008345.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: son:SO3285 cytochrome bd-I oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II 1351109 4278044 Sfri_1143 Shewanella frigidimarina NCIMB 400 cytochrome d ubiquinol oxidase, subunit II YP_749834.1 1349970 D 318167 CDS YP_749835.1 114562322 4278045 1351127..1351237 1 NC_008345.1 TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: ppr:PBPRA2556 hypothetical protein; cyd operon protein YbgT 1351237 4278045 Sfri_1144 Shewanella frigidimarina NCIMB 400 cyd operon protein YbgT YP_749835.1 1351127 D 318167 CDS YP_749836.1 114562323 4278046 1351601..1352050 1 NC_008345.1 KEGG: hch:HCH_03970 protein required for attachment to host cells; host cell attachment-required protein 1352050 4278046 Sfri_1145 Shewanella frigidimarina NCIMB 400 host cell attachment-required protein YP_749836.1 1351601 D 318167 CDS YP_749837.1 114562324 4278047 complement(1352295..1354301) 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3282 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1354301 4278047 Sfri_1146 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_749837.1 1352295 R 318167 CDS YP_749838.1 114562325 4278048 complement(1354448..1357513) 1 NC_008345.1 PFAM: acriflavin resistance protein; KEGG: son:SO3279 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 1357513 4278048 Sfri_1147 Shewanella frigidimarina NCIMB 400 acriflavin resistance protein YP_749838.1 1354448 R 318167 CDS YP_749839.1 114562326 4277857 complement(1357510..1358631) 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO3278 hypothetical protein; RND family efflux transporter MFP subunit 1358631 4277857 Sfri_1148 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_749839.1 1357510 R 318167 CDS YP_749840.1 114562327 4277858 1358846..1359526 1 NC_008345.1 PFAM: regulatory protein, TetR; KEGG: son:SO3277 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein 1359526 4277858 Sfri_1149 Shewanella frigidimarina NCIMB 400 transcriptional regulator, TetR family protein YP_749840.1 1358846 D 318167 CDS YP_749841.1 114562328 4277859 1359660..1360592 1 NC_008345.1 KEGG: son:SO3276 hypothetical protein; hypothetical protein 1360592 4277859 Sfri_1150 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749841.1 1359660 D 318167 CDS YP_749842.1 114562329 4277860 complement(1360676..1361122) 1 NC_008345.1 PFAM: protein of unknown function DUF400; KEGG: son:SO3256 hypothetical protein; hypothetical protein 1361122 4277860 Sfri_1151 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749842.1 1360676 R 318167 CDS YP_749843.1 114562330 4277861 complement(1361119..1361829) 1 NC_008345.1 KEGG: son:SO3257 hypothetical protein; hypothetical protein 1361829 4277861 Sfri_1152 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749843.1 1361119 R 318167 CDS YP_749844.1 114562331 4277862 1362099..1363307 1 NC_008345.1 KEGG: son:SO3258 hypothetical protein; hypothetical protein 1363307 4277862 Sfri_1153 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749844.1 1362099 D 318167 CDS YP_749845.1 114562332 4277863 1363799..1364278 1 NC_008345.1 KEGG: son:SO3274 hypothetical protein; hypothetical protein 1364278 4277863 Sfri_1154 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749845.1 1363799 D 318167 CDS YP_749846.1 114562333 4277864 1364359..1364919 1 NC_008345.1 KEGG: son:SO3275 hypothetical protein; hypothetical protein 1364919 4277864 Sfri_1155 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749846.1 1364359 D 318167 CDS YP_749847.1 114562334 4277865 complement(1365076..1365549) 1 NC_008345.1 PFAM: FlgN family protein; KEGG: son:SO3255 flagellar biosynthetic protein FlgN; FlgN family protein 1365549 4277865 Sfri_1156 Shewanella frigidimarina NCIMB 400 FlgN family protein YP_749847.1 1365076 R 318167 CDS YP_749848.1 114562335 4277866 complement(1365652..1365981) 1 NC_008345.1 PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: son:SO3254 negative regulator of flagellin synthesis FlgM; anti-sigma-28 factor FlgM 1365981 4277866 Sfri_1157 Shewanella frigidimarina NCIMB 400 anti-sigma-28 factor FlgM YP_749848.1 1365652 R 318167 CDS YP_749849.1 114562336 4277867 complement(1366056..1366763) 1 NC_008345.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1366763 flgA 4277867 flgA Shewanella frigidimarina NCIMB 400 flagellar basal body P-ring biosynthesis protein FlgA YP_749849.1 1366056 R 318167 CDS YP_749850.1 114562337 4277868 1367134..1368054 1 NC_008345.1 PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO3252 chemotaxis protein CheV; response regulator receiver modulated CheW protein 1368054 4277868 Sfri_1159 Shewanella frigidimarina NCIMB 400 response regulator receiver modulated CheW protein YP_749850.1 1367134 D 318167 CDS YP_749851.1 114562338 4277869 1368127..1368960 1 NC_008345.1 PFAM: MCP methyltransferase, CheR-type; KEGG: son:SO3251 chemotaxis protein methyltransferase CheR; chemotaxis protein CheR 1368960 4277869 Sfri_1160 Shewanella frigidimarina NCIMB 400 chemotaxis protein CheR YP_749851.1 1368127 D 318167 CDS YP_749852.1 114562339 4277870 1369097..1369495 1 NC_008345.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 1369495 flgB 4277870 flgB Shewanella frigidimarina NCIMB 400 flagellar basal body rod protein FlgB YP_749852.1 1369097 D 318167 CDS YP_749853.1 114562340 4277871 1369498..1369914 1 NC_008345.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1369914 flgC 4277871 flgC Shewanella frigidimarina NCIMB 400 flagellar basal body rod protein FlgC YP_749853.1 1369498 D 318167 CDS YP_749854.1 114562341 4277872 1369938..1370723 1 NC_008345.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1370723 flgD 4277872 flgD Shewanella frigidimarina NCIMB 400 flagellar basal body rod modification protein YP_749854.1 1369938 D 318167 CDS YP_749855.1 114562342 4277873 1370784..1372163 1 NC_008345.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1372163 flgE 4277873 flgE Shewanella frigidimarina NCIMB 400 flagellar hook protein FlgE YP_749855.1 1370784 D 318167 CDS YP_749856.1 114562343 4277874 1372452..1373195 1 NC_008345.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1373195 flgF 4277874 flgF Shewanella frigidimarina NCIMB 400 flagellar basal body rod protein FlgF YP_749856.1 1372452 D 318167 CDS YP_749857.1 114562344 4278434 1373207..1373995 1 NC_008345.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1373995 flgG 4278434 flgG Shewanella frigidimarina NCIMB 400 flagellar basal body rod protein FlgG YP_749857.1 1373207 D 318167 CDS YP_749858.1 114562345 4278435 1374005..1374679 1 NC_008345.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 1374679 flgH 4278435 flgH Shewanella frigidimarina NCIMB 400 flagellar basal body L-ring protein YP_749858.1 1374005 D 318167 CDS YP_749859.1 114562346 4278436 1374690..1375796 1 NC_008345.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1375796 flgI 4278436 flgI Shewanella frigidimarina NCIMB 400 flagellar basal body P-ring protein YP_749859.1 1374690 D 318167 CDS YP_749860.1 114562347 4278437 1375808..1376941 1 NC_008345.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1376941 flgJ 4278437 flgJ Shewanella frigidimarina NCIMB 400 flagellar rod assembly protein/muramidase FlgJ YP_749860.1 1375808 D 318167 CDS YP_749861.1 114562348 4278438 1376941..1378869 1 NC_008345.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: son:SO3239.3 hypothetical flagellar hook-associated protein; flagellar hook-associated protein FlgK 1378869 4278438 Sfri_1170 Shewanella frigidimarina NCIMB 400 flagellar hook-associated protein FlgK YP_749861.1 1376941 D 318167 CDS YP_749862.1 114562349 4278439 1378880..1380085 1 NC_008345.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 1380085 flgL 4278439 flgL Shewanella frigidimarina NCIMB 400 flagellar hook-associated protein FlgL YP_749862.1 1378880 D 318167 CDS YP_749863.1 114562350 4278440 1380178..1381626 1 NC_008345.1 PFAM: flagellin domain protein; KEGG: pae:PA1092 flagellin type B; flagellin domain-containing protein 1381626 4278440 Sfri_1172 Shewanella frigidimarina NCIMB 400 flagellin domain-containing protein YP_749863.1 1380178 D 318167 CDS YP_749864.1 114562351 4278441 1381888..1383333 1 NC_008345.1 PFAM: flagellin domain protein; KEGG: pae:PA1092 flagellin type B; flagellin domain-containing protein 1383333 4278441 Sfri_1173 Shewanella frigidimarina NCIMB 400 flagellin domain-containing protein YP_749864.1 1381888 D 318167 CDS YP_749865.1 114562352 4278442 1383550..1383999 1 NC_008345.1 PFAM: flagellar protein FlaG protein; KEGG: son:SO3236 flagellin FlaG; flagellar protein FlaG protein 1383999 4278442 Sfri_1174 Shewanella frigidimarina NCIMB 400 flagellar protein FlaG protein YP_749865.1 1383550 D 318167 CDS YP_749866.1 114562353 4278443 1384065..1385429 1 NC_008345.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: son:SO3235 flagellar hook-associated protein FliD; flagellar hook-associated 2 domain-containing protein 1385429 4278443 Sfri_1175 Shewanella frigidimarina NCIMB 400 flagellar hook-associated 2 domain-containing protein YP_749866.1 1384065 D 318167 CDS YP_749867.1 114562354 4278444 1385517..1385861 1 NC_008345.1 KEGG: son:SO3234 hypothetical protein; hypothetical protein 1385861 4278444 Sfri_1176 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749867.1 1385517 D 318167 CDS YP_749868.1 114562355 4278445 1385868..1386272 1 NC_008345.1 flagellin specific chaperone; flagellar protein FliS 1386272 fliS 4278445 fliS Shewanella frigidimarina NCIMB 400 flagellar protein FliS YP_749868.1 1385868 D 318167 CDS YP_749869.1 114562356 4278446 1386925..1388355 1 NC_008345.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: son:SO3232 flagellar regulatory protein A; sigma54 specific transcriptional regulator, Fis family protein 1388355 4278446 Sfri_1178 Shewanella frigidimarina NCIMB 400 sigma54 specific transcriptional regulator, Fis family protein YP_749869.1 1386925 D 318167 CDS YP_749870.1 114562357 4278447 1388861..1389931 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: son:SO3231 flagellar regulatory protein B; PAS/PAC sensor signal transduction histidine kinase 1389931 4278447 Sfri_1179 Shewanella frigidimarina NCIMB 400 PAS/PAC sensor signal transduction histidine kinase YP_749870.1 1388861 D 318167 CDS YP_749871.1 114562358 4278448 1389924..1391273 1 NC_008345.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: son:SO3230 flagellar regulatory protein C; Fis family two component sigma-54-specific transcriptional regulator 1391273 4278448 Sfri_1180 Shewanella frigidimarina NCIMB 400 Fis family two component sigma-54-specific transcriptional regulator YP_749871.1 1389924 D 318167 CDS YP_749872.1 114562359 4278449 1391514..1391855 1 NC_008345.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: son:SO3229 flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 1391855 4278449 Sfri_1181 Shewanella frigidimarina NCIMB 400 flagellar hook-basal body complex subunit FliE YP_749872.1 1391514 D 318167 CDS YP_749873.1 114562360 4278450 1391931..1393607 1 NC_008345.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1393607 fliF 4278450 fliF Shewanella frigidimarina NCIMB 400 flagellar MS-ring protein YP_749873.1 1391931 D 318167 CDS YP_749874.1 114562361 4277052 1393600..1394655 1 NC_008345.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1394655 fliG 4277052 fliG Shewanella frigidimarina NCIMB 400 flagellar motor switch protein G YP_749874.1 1393600 D 318167 CDS YP_749875.1 114562362 4277053 1394810..1396021 1 NC_008345.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1396021 fliH 4277053 fliH Shewanella frigidimarina NCIMB 400 flagellar assembly protein H YP_749875.1 1394810 D 318167 CDS YP_749876.1 114562363 4277054 1396002..1397342 1 NC_008345.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1397342 fliI 4277054 fliI Shewanella frigidimarina NCIMB 400 flagellum-specific ATP synthase YP_749876.1 1396002 D 318167 CDS YP_749877.1 114562364 4277055 1397348..1397794 1 NC_008345.1 TIGRFAM: flagellar export protein FliJ; KEGG: son:SO3224 flagellar protein FliJ; flagellar export protein FliJ 1397794 4277055 Sfri_1186 Shewanella frigidimarina NCIMB 400 flagellar export protein FliJ YP_749877.1 1397348 D 318167 CDS YP_749878.1 114562365 4277056 1398099..1399637 1 NC_008345.1 PFAM: flagellar hook-length control protein; KEGG: son:SO3223 flagellar hook-length control protein FliK; flagellar hook-length control protein 1399637 4277056 Sfri_1187 Shewanella frigidimarina NCIMB 400 flagellar hook-length control protein YP_749878.1 1398099 D 318167 CDS YP_749879.1 114562366 4277057 1399731..1400252 1 NC_008345.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1400252 fliL 4277057 fliL Shewanella frigidimarina NCIMB 400 flagellar basal body-associated protein FliL YP_749879.1 1399731 D 318167 CDS YP_749880.1 114562367 4277058 1400282..1401310 1 NC_008345.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1401310 fliM 4277058 fliM Shewanella frigidimarina NCIMB 400 flagellar motor switch protein FliM YP_749880.1 1400282 D 318167 CDS YP_749881.1 114562368 4277059 1401322..1401705 1 NC_008345.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1401705 fliN 4277059 fliN Shewanella frigidimarina NCIMB 400 flagellar motor switch protein YP_749881.1 1401322 D 318167 CDS YP_749882.1 114562369 4277060 1401791..1402201 1 NC_008345.1 PFAM: flagellar biosynthesis protein, FliO; KEGG: son:SO3219 flagellar protein FliO; flagellar biosynthesis protein, FliO 1402201 4277060 Sfri_1191 Shewanella frigidimarina NCIMB 400 flagellar biosynthesis protein, FliO YP_749882.1 1401791 D 318167 CDS YP_749883.1 114562370 4277061 1402201..1402962 1 NC_008345.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1402962 fliP 4277061 fliP Shewanella frigidimarina NCIMB 400 flagellar biosynthesis protein FliP YP_749883.1 1402201 D 318167 CDS YP_749884.1 114562371 4277062 1402975..1403244 1 NC_008345.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: son:SO3217 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 1403244 4277062 Sfri_1193 Shewanella frigidimarina NCIMB 400 flagellar biosynthetic protein FliQ YP_749884.1 1402975 D 318167 CDS YP_749885.1 114562372 4277063 1403248..1404051 1 NC_008345.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1404051 fliR 4277063 fliR Shewanella frigidimarina NCIMB 400 flagellar biosynthesis protein FliR YP_749885.1 1403248 D 318167 CDS YP_749886.1 114562373 4277064 1404061..1405194 1 NC_008345.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1405194 flhB 4277064 flhB Shewanella frigidimarina NCIMB 400 flagellar biosynthesis protein FlhB YP_749886.1 1404061 D 318167 CDS YP_749887.1 114562374 4277065 1405311..1407410 1 NC_008345.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1407410 flhA 4277065 flhA Shewanella frigidimarina NCIMB 400 flagellar biosynthesis protein FlhA YP_749887.1 1405311 D 318167 CDS YP_749888.1 114562375 4277066 1407440..1408825 1 NC_008345.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1408825 flhF 4277066 flhF Shewanella frigidimarina NCIMB 400 flagellar biosynthesis regulator FlhF YP_749888.1 1407440 D 318167 CDS YP_749889.1 114562376 4277067 1408830..1409711 1 NC_008345.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3211 flagellar biosynthetic protein FlhG; cobyrinic acid a,c-diamide synthase 1409711 4277067 Sfri_1198 Shewanella frigidimarina NCIMB 400 cobyrinic acid a,c-diamide synthase YP_749889.1 1408830 D 318167 CDS YP_749890.1 114562377 4277068 1409704..1410423 1 NC_008345.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1410423 fliA 4277068 fliA Shewanella frigidimarina NCIMB 400 flagellar biosynthesis sigma factor YP_749890.1 1409704 D 318167 CDS YP_749891.1 114562378 4277069 1410480..1410851 1 NC_008345.1 PFAM: response regulator receiver; KEGG: son:SO3209 chemotaxis protein CheY; response regulator receiver protein 1410851 4277069 Sfri_1200 Shewanella frigidimarina NCIMB 400 response regulator receiver protein YP_749891.1 1410480 D 318167 CDS YP_749892.1 114562379 4278015 1410865..1411602 1 NC_008345.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: son:SO3208 chemotaxis protein CheZ; chemotaxis phosphatase, CheZ 1411602 4278015 Sfri_1201 Shewanella frigidimarina NCIMB 400 chemotaxis phosphatase, CheZ YP_749892.1 1410865 D 318167 CDS YP_749893.1 114562380 4278016 1411618..1413828 1 NC_008345.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: son:SO3207 chemotaxis protein; CheA signal transduction histidine kinase 1413828 4278016 Sfri_1202 Shewanella frigidimarina NCIMB 400 CheA signal transduction histidine kinase YP_749893.1 1411618 D 318167 CDS YP_749894.1 114562381 4278017 1413859..1415055 1 NC_008345.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1415055 4278017 Sfri_1203 Shewanella frigidimarina NCIMB 400 chemotaxis-specific methylesterase YP_749894.1 1413859 D 318167 CDS YP_749895.1 114562382 4278018 1415084..1415512 1 NC_008345.1 KEGG: son:SO3205 hypothetical protein; hypothetical protein 1415512 4278018 Sfri_1204 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749895.1 1415084 D 318167 CDS YP_749896.1 114562383 4278019 1415558..1416352 1 NC_008345.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3204 ParA family protein; cobyrinic acid a,c-diamide synthase 1416352 4278019 Sfri_1205 Shewanella frigidimarina NCIMB 400 cobyrinic acid a,c-diamide synthase YP_749896.1 1415558 D 318167 CDS YP_749897.1 114562384 4278020 1416336..1417418 1 NC_008345.1 PFAM: CheW domain protein; KEGG: son:SO3203 CheW domain protein; CheW protein 1417418 4278020 Sfri_1206 Shewanella frigidimarina NCIMB 400 CheW protein YP_749897.1 1416336 D 318167 CDS YP_749898.1 114562385 4278021 1417421..1417915 1 NC_008345.1 PFAM: CheW domain protein; KEGG: son:SO3202 purine-binding chemotaxis protein CheW; CheW protein 1417915 4278021 Sfri_1207 Shewanella frigidimarina NCIMB 400 CheW protein YP_749898.1 1417421 D 318167 CDS YP_749899.1 114562386 4278022 1418008..1418406 1 NC_008345.1 KEGG: son:SO3200 hypothetical protein; hypothetical protein 1418406 4278022 Sfri_1208 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749899.1 1418008 D 318167 CDS YP_749900.1 114562387 4278023 complement(1418495..1419871) 1 NC_008345.1 PFAM: Fmu (Sun) domain protein; KEGG: son:SO1575 NOL1/NOP2/sun family putative RNA methylase; Fmu (Sun) domain-containing protein 1419871 4278023 Sfri_1209 Shewanella frigidimarina NCIMB 400 Fmu (Sun) domain-containing protein YP_749900.1 1418495 R 318167 CDS YP_749901.1 114562388 4278024 complement(1420316..1420987) 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO1579 hypothetical protein; hypothetical protein 1420987 4278024 Sfri_1210 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749901.1 1420316 R 318167 CDS YP_749902.1 114562389 4278025 1421457..1421888 1 NC_008345.1 PFAM: protein of unknown function DUF785; KEGG: ilo:IL0498 predicted aspartyl protease; hypothetical protein 1421888 4278025 Sfri_1211 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749902.1 1421457 D 318167 CDS YP_749903.1 114562390 4278026 1421892..1422797 1 NC_008345.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: vfi:VF0658 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 1422797 4278026 Sfri_1212 Shewanella frigidimarina NCIMB 400 alpha-L-glutamate ligase YP_749903.1 1421892 D 318167 CDS YP_749904.1 114562391 4278027 1422797..1423810 1 NC_008345.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO1583 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 1423810 4278027 Sfri_1213 Shewanella frigidimarina NCIMB 400 succinylglutamate desuccinylase/aspartoacylase YP_749904.1 1422797 D 318167 CDS YP_749905.1 114562392 4278028 1424345..1425928 1 NC_008345.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: ilo:IL0032 methyl-accepting chemotaxis protein (PAS/PAC and MSP doamins); methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1425928 4278028 Sfri_1214 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_749905.1 1424345 D 318167 CDS YP_749906.1 114562393 4278029 complement(1426034..1428070) 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cps:CPS_4528 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1428070 4278029 Sfri_1215 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_749906.1 1426034 R 318167 CDS YP_749907.1 114562394 4278030 1428443..1429135 1 NC_008345.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1585 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase 1429135 4278030 Sfri_1216 Shewanella frigidimarina NCIMB 400 fumarylacetoacetate (FAA) hydrolase YP_749907.1 1428443 D 318167 CDS YP_749908.1 114562395 4278031 complement(1429234..1429491) 1 NC_008345.1 KEGG: son:SO1588 hypothetical protein; hypothetical protein 1429491 4278031 Sfri_1217 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749908.1 1429234 R 318167 CDS YP_749909.1 114562396 4278468 complement(1429556..1431184) 1 NC_008345.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: son:SO1597 hypothetical protein; 2-nitropropane dioxygenase 1431184 4278468 Sfri_1218 Shewanella frigidimarina NCIMB 400 2-nitropropane dioxygenase YP_749909.1 1429556 R 318167 CDS YP_749910.1 114562397 4278469 complement(1431202..1437159) 1 NC_008345.1 PFAM: beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: son:SO1599 multi-domain beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ 1437159 4278469 Sfri_1219 Shewanella frigidimarina NCIMB 400 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_749910.1 1431202 R 318167 CDS YP_749911.1 114562398 4278470 complement(1437156..1439249) 1 NC_008345.1 KEGG: ppr:PBPRA1459 omega-3 polyunsaturated fatty acid synthase PfaB; omega-3 polyunsaturated fatty acid synthase PfaB 1439249 4278470 Sfri_1220 Shewanella frigidimarina NCIMB 400 omega-3 polyunsaturated fatty acid synthase PfaB YP_749911.1 1437156 R 318167 CDS YP_749912.1 114562399 4278471 complement(1439246..1447108) 1 NC_008345.1 PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KEGG: ppr:PBPRA1460 omega-3 polyunsaturated fatty acid synthase PfaA; beta-ketoacyl synthase 1447108 4278471 Sfri_1221 Shewanella frigidimarina NCIMB 400 beta-ketoacyl synthase YP_749912.1 1439246 R 318167 CDS YP_749913.1 114562400 4278472 complement(1447092..1447973) 1 NC_008345.1 KEGG: son:SO1603 transcriptional regulator, putative; transcriptional regulator 1447973 4278472 Sfri_1222 Shewanella frigidimarina NCIMB 400 transcriptional regulator YP_749913.1 1447092 R 318167 CDS YP_749914.1 114562401 4278473 complement(1448419..1449417) 1 NC_008345.1 KEGG: sde:Sde_3560 hypothetical protein; hypothetical protein 1449417 4278473 Sfri_1223 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749914.1 1448419 R 318167 CDS YP_749915.1 114562402 4278474 complement(1449419..1449952) 1 NC_008345.1 KEGG: sde:Sde_3561 sigma-70 factor; sigma-70 factor 1449952 4278474 Sfri_1224 Shewanella frigidimarina NCIMB 400 sigma-70 factor YP_749915.1 1449419 R 318167 CDS YP_749916.1 114562403 4278475 complement(1449949..1450515) 1 NC_008345.1 KEGG: sde:Sde_3562 hypothetical protein; hypothetical protein 1450515 4278475 Sfri_1225 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749916.1 1449949 R 318167 CDS YP_749917.1 114562404 4278476 complement(1450521..1451174) 1 NC_008345.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: sde:Sde_3563 ATPase; MotA/TolQ/ExbB proton channel 1451174 4278476 Sfri_1226 Shewanella frigidimarina NCIMB 400 MotA/TolQ/ExbB proton channel YP_749917.1 1450521 R 318167 CDS YP_749918.1 114562405 4278477 complement(1451307..1451660) 1 NC_008345.1 hypothetical protein 1451660 4278477 Sfri_1227 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749918.1 1451307 R 318167 CDS YP_749919.1 114562406 4278478 complement(1451662..1452453) 1 NC_008345.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_02603 FOG: TPR repeat; TPR repeat-containing protein 1452453 4278478 Sfri_1228 Shewanella frigidimarina NCIMB 400 TPR repeat-containing protein YP_749919.1 1451662 R 318167 CDS YP_749920.1 114562407 4278479 complement(1452440..1455490) 1 NC_008345.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_02602 hypothetical protein; TPR repeat-containing protein 1455490 4278479 Sfri_1229 Shewanella frigidimarina NCIMB 400 TPR repeat-containing protein YP_749920.1 1452440 R 318167 CDS YP_749921.1 114562408 4278480 complement(1455490..1457568) 1 NC_008345.1 KEGG: sde:Sde_3567 hypothetical protein; hypothetical protein 1457568 4278480 Sfri_1230 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749921.1 1455490 R 318167 CDS YP_749922.1 114562409 4278481 complement(1457728..1458288) 1 NC_008345.1 KEGG: sde:Sde_3568 helix-turn-helix, AraC type; helix-turn-helix, AraC type 1458288 4278481 Sfri_1231 Shewanella frigidimarina NCIMB 400 helix-turn-helix, AraC type YP_749922.1 1457728 R 318167 CDS YP_749923.1 114562410 4278482 complement(1458343..1459506) 1 NC_008345.1 KEGG: hch:HCH_02599 hypothetical protein; hypothetical protein 1459506 4278482 Sfri_1232 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749923.1 1458343 R 318167 CDS YP_749924.1 114562411 4278483 complement(1459484..1459744) 1 NC_008345.1 KEGG: sde:Sde_3552 lipoprotein, putative; putative lipoprotein 1459744 4278483 Sfri_1233 Shewanella frigidimarina NCIMB 400 putative lipoprotein YP_749924.1 1459484 R 318167 CDS YP_749925.1 114562412 4278484 complement(1459749..1460252) 1 NC_008345.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: hch:HCH_02597 thiol-disulfide isomerase and thioredoxins; redoxin domain-containing protein 1460252 4278484 Sfri_1234 Shewanella frigidimarina NCIMB 400 redoxin domain-containing protein YP_749925.1 1459749 R 318167 CDS YP_749926.1 114562413 4278485 complement(1460330..1460962) 1 NC_008345.1 KEGG: hch:HCH_02596 hypothetical protein; hypothetical protein 1460962 4278485 Sfri_1235 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749926.1 1460330 R 318167 CDS YP_749927.1 114562414 4277351 complement(1460962..1461702) 1 NC_008345.1 PFAM: protein of unknown function DUF1058; SH3, type 3 domain protein; KEGG: sde:Sde_3549 hypothetical protein; hypothetical protein 1461702 4277351 Sfri_1236 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749927.1 1460962 R 318167 CDS YP_749928.1 114562415 4277352 complement(1461760..1464417) 1 NC_008345.1 KEGG: hch:HCH_02594 hypothetical protein; hypothetical protein 1464417 4277352 Sfri_1237 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749928.1 1461760 R 318167 CDS YP_749929.1 114562416 4277353 1464721..1465989 1 NC_008345.1 KEGG: hch:HCH_02593 hypothetical protein; hypothetical protein 1465989 4277353 Sfri_1238 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749929.1 1464721 D 318167 CDS YP_749930.1 114562417 4277354 1466004..1468430 1 NC_008345.1 KEGG: hch:HCH_02592 hypothetical protein; hypothetical protein 1468430 4277354 Sfri_1239 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749930.1 1466004 D 318167 CDS YP_749931.1 114562418 4277355 1468575..1470152 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: hch:HCH_02591 hypothetical protein; twin-arginine translocation pathway signal 1470152 4277355 Sfri_1240 Shewanella frigidimarina NCIMB 400 twin-arginine translocation pathway signal YP_749931.1 1468575 D 318167 CDS YP_749932.1 114562419 4277356 1470805..1471881 1 NC_008345.1 KEGG: sty:HCM2.0093c hypothetical protein; hypothetical protein 1471881 4277356 Sfri_1241 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749932.1 1470805 D 318167 CDS YP_749933.1 114562420 4277357 1472307..1473050 1 NC_008345.1 KEGG: sty:STY3192 hypothetical protein; hypothetical protein 1473050 4277357 Sfri_1242 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749933.1 1472307 D 318167 CDS YP_749934.1 114562421 4277358 1473171..1473650 1 NC_008345.1 hypothetical protein 1473650 4277358 Sfri_1243 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749934.1 1473171 D 318167 CDS YP_749935.1 114562422 4277359 complement(1473891..1474937) 1 NC_008345.1 PFAM: ApbE family lipoprotein; KEGG: sde:Sde_3569 membrane protein; ApbE family lipoprotein 1474937 4277359 Sfri_1244 Shewanella frigidimarina NCIMB 400 ApbE family lipoprotein YP_749935.1 1473891 R 318167 CDS YP_749936.1 114562423 4277360 1475090..1476085 1 NC_008345.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: son:SO1604 4'-phosphopantetheinyl transferase family protein; 4'-phosphopantetheinyl transferase 1476085 4277360 Sfri_1245 Shewanella frigidimarina NCIMB 400 4'-phosphopantetheinyl transferase YP_749936.1 1475090 D 318167 CDS YP_749937.1 114562424 4277361 complement(1476242..1478233) 1 NC_008345.1 PFAM: beta-lactamase domain protein; KEGG: son:SO1606 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein 1478233 4277361 Sfri_1246 Shewanella frigidimarina NCIMB 400 beta-lactamase domain-containing protein YP_749937.1 1476242 R 318167 CDS YP_749938.1 114562425 4277362 1478449..1479405 1 NC_008345.1 PFAM: regulatory protein, LysR; KEGG: son:SO1607 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 1479405 4277362 Sfri_1247 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_749938.1 1478449 D 318167 CDS YP_749939.1 114562426 4277363 complement(1479554..1480411) 1 NC_008345.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1480411 queF 4277363 queF Shewanella frigidimarina NCIMB 400 7-cyano-7-deazaguanine reductase YP_749939.1 1479554 R 318167 CDS YP_749940.1 114562427 4277364 1480466..1481116 1 NC_008345.1 putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 1481116 4277364 Sfri_1249 Shewanella frigidimarina NCIMB 400 SecY interacting protein Syd YP_749940.1 1480466 D 318167 CDS YP_749941.1 114562428 4277365 complement(1481231..1483951) 1 NC_008345.1 KEGG: son:SO4019 hypothetical protein; hypothetical protein 1483951 4277365 Sfri_1250 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749941.1 1481231 R 318167 CDS YP_749942.1 114562429 4277366 complement(1483960..1484733) 1 NC_008345.1 KEGG: son:SO1610 hypothetical protein; hypothetical protein 1484733 4277366 Sfri_1251 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749942.1 1483960 R 318167 CDS YP_749943.1 114562430 4277367 complement(1484734..1485099) 1 NC_008345.1 KEGG: son:SO1611 hypothetical protein; hypothetical protein 1485099 4277367 Sfri_1252 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749943.1 1484734 R 318167 CDS YP_749944.1 114562431 4277385 1485259..1485642 1 NC_008345.1 KEGG: son:SO1612 hypothetical protein; hypothetical protein 1485642 4277385 Sfri_1253 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749944.1 1485259 D 318167 CDS YP_749945.1 114562432 4277386 complement(1485677..1485913) 1 NC_008345.1 KEGG: pha:PSHAa1976 hypothetical protein; hypothetical protein 1485913 4277386 Sfri_1254 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749945.1 1485677 R 318167 CDS YP_749946.1 114562433 4277387 1486087..1486716 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1614 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1486716 4277387 Sfri_1255 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_749946.1 1486087 D 318167 CDS YP_749947.1 114562434 4277388 1486786..1487094 1 NC_008345.1 KEGG: son:SO1615 hypothetical protein; hypothetical protein 1487094 4277388 Sfri_1256 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749947.1 1486786 D 318167 CDS YP_749948.1 114562435 4277389 1488253..1489299 1 NC_008345.1 PFAM: Semialdehyde dehydrogenase, NAD - binding; oxidoreductase domain protein; Oxidoreductase, C-terminal domain protein; KEGG: yps:YPTB2178 putative oxidoreductase; oxidoreductase domain-containing protein 1489299 4277389 Sfri_1257 Shewanella frigidimarina NCIMB 400 oxidoreductase domain-containing protein YP_749948.1 1488253 D 318167 CDS YP_749949.1 114562436 4277390 1490579..1491286 1 NC_008345.1 hypothetical protein 1491286 4277390 Sfri_1258 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749949.1 1490579 D 318167 CDS YP_749950.1 114562437 4277391 complement(1491381..1491767) 1 NC_008345.1 KEGG: son:SO1617 hypothetical protein; hypothetical protein 1491767 4277391 Sfri_1259 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749950.1 1491381 R 318167 CDS YP_749951.1 114562438 4277392 complement(1491764..1492777) 1 NC_008345.1 KEGG: son:SO1618 hypothetical protein; hypothetical protein 1492777 4277392 Sfri_1260 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749951.1 1491764 R 318167 CDS YP_749952.1 114562439 4277393 1492826..1493188 1 NC_008345.1 PFAM: protein of unknown function DUF446; KEGG: son:SO1619 hypothetical protein; hypothetical protein 1493188 4277393 Sfri_1261 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749952.1 1492826 D 318167 CDS YP_749953.1 114562440 4277394 1493272..1494153 1 NC_008345.1 PFAM: pseudouridine synthase; KEGG: vfi:VF0613 tRNA pseudouridine synthase C; pseudouridylate synthase 1494153 4277394 Sfri_1262 Shewanella frigidimarina NCIMB 400 pseudouridylate synthase YP_749953.1 1493272 D 318167 CDS YP_749954.1 114562441 4277395 1494481..1494945 1 NC_008345.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 1494945 4277395 Sfri_1263 Shewanella frigidimarina NCIMB 400 flavodoxin YP_749954.1 1494481 D 318167 CDS YP_749955.1 114562442 4277396 1494897..1496375 1 NC_008345.1 TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: son:SO1623 PTS system, glucose-specific IIBC component; PTS system glucose-like transporter subunit IIB 1496375 4277396 Sfri_1264 Shewanella frigidimarina NCIMB 400 PTS system glucose-like transporter subunit IIB YP_749955.1 1494897 D 318167 CDS YP_749956.1 114562443 4277397 1496555..1497427 1 NC_008345.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1497427 purU 4277397 purU Shewanella frigidimarina NCIMB 400 formyltetrahydrofolate deformylase YP_749956.1 1496555 D 318167 CDS YP_749957.1 114562444 4277398 1497594..1499489 1 NC_008345.1 PFAM: CBS domain containing protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mag:amb0553 response regulator; metal dependent phosphohydrolase 1499489 4277398 Sfri_1266 Shewanella frigidimarina NCIMB 400 metal dependent phosphohydrolase YP_749957.1 1497594 D 318167 CDS YP_749958.1 114562445 4277399 complement(1499626..1500450) 1 NC_008345.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 1500450 dapD 4277399 dapD Shewanella frigidimarina NCIMB 400 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_749958.1 1499626 R 318167 CDS YP_749959.1 114562446 4277400 complement(1500501..1503074) 1 NC_008345.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 1503074 4277400 Sfri_1268 Shewanella frigidimarina NCIMB 400 PII uridylyl-transferase YP_749959.1 1500501 R 318167 CDS YP_749960.1 114562447 4277401 complement(1503099..1503896) 1 NC_008345.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1503896 4277401 Sfri_1269 Shewanella frigidimarina NCIMB 400 methionine aminopeptidase YP_749960.1 1503099 R 318167 CDS YP_749961.1 114562448 4277402 1504247..1504975 1 NC_008345.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1504975 rpsB 4277402 rpsB Shewanella frigidimarina NCIMB 400 30S ribosomal protein S2 YP_749961.1 1504247 D 318167 CDS YP_749962.1 114562449 4278382 1505093..1505944 1 NC_008345.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1505944 tsf 4278382 tsf Shewanella frigidimarina NCIMB 400 elongation factor Ts YP_749962.1 1505093 D 318167 CDS YP_749963.1 114562450 4278383 1506013..1506750 1 NC_008345.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1506750 pyrH 4278383 pyrH Shewanella frigidimarina NCIMB 400 uridylate kinase YP_749963.1 1506013 D 318167 CDS YP_749964.1 114562451 4278384 1506870..1507427 1 NC_008345.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1507427 frr 4278384 frr Shewanella frigidimarina NCIMB 400 ribosome recycling factor YP_749964.1 1506870 D 318167 CDS YP_749965.1 114562452 4278385 1507509..1508333 1 NC_008345.1 KEGG: son:SO1633 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 1508333 4278385 Sfri_1274 Shewanella frigidimarina NCIMB 400 undecaprenyl diphosphate synthase YP_749965.1 1507509 D 318167 CDS YP_749966.1 114562453 4278386 1508353..1509210 1 NC_008345.1 PFAM: phosphatidate cytidylyltransferase; KEGG: son:SO1634 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1509210 4278386 Sfri_1275 Shewanella frigidimarina NCIMB 400 phosphatidate cytidylyltransferase YP_749966.1 1508353 D 318167 CDS YP_749967.1 114562454 4278387 1509216..1510406 1 NC_008345.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1510406 4278387 Sfri_1276 Shewanella frigidimarina NCIMB 400 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_749967.1 1509216 D 318167 CDS YP_749968.1 114562455 4278388 1510419..1511789 1 NC_008345.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: son:SO1636 membrane-associated zinc metalloprotease, putative; putative membrane-associated zinc metalloprotease 1511789 4278388 Sfri_1277 Shewanella frigidimarina NCIMB 400 putative membrane-associated zinc metalloprotease YP_749968.1 1510419 D 318167 CDS YP_749969.1 114562456 4278389 1511821..1514304 1 NC_008345.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO1637 bacterial surface antigen; surface antigen (D15) 1514304 4278389 Sfri_1278 Shewanella frigidimarina NCIMB 400 surface antigen (D15) YP_749969.1 1511821 D 318167 CDS YP_749970.1 114562457 4278390 1514370..1514867 1 NC_008345.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: son:SO1638 outer membrane protein OmpH; outer membrane chaperone Skp (OmpH) 1514867 4278390 Sfri_1279 Shewanella frigidimarina NCIMB 400 outer membrane chaperone Skp (OmpH) YP_749970.1 1514370 D 318167 CDS YP_749971.1 114562458 4278391 1514873..1515895 1 NC_008345.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1515895 lpxD 4278391 lpxD Shewanella frigidimarina NCIMB 400 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_749971.1 1514873 D 318167 CDS YP_749972.1 114562459 4278392 1515927..1516388 1 NC_008345.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1516388 fabZ 4278392 fabZ Shewanella frigidimarina NCIMB 400 (3R)-hydroxymyristoyl-ACP dehydratase YP_749972.1 1515927 D 318167 CDS YP_749973.1 114562460 4278393 1516385..1517155 1 NC_008345.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1517155 4278393 Sfri_1282 Shewanella frigidimarina NCIMB 400 UDP-N-acetylglucosamine acyltransferase YP_749973.1 1516385 D 318167 CDS YP_749974.1 114562461 4278394 1517165..1518313 1 NC_008345.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1518313 lpxB 4278394 lpxB Shewanella frigidimarina NCIMB 400 lipid-A-disaccharide synthase YP_749974.1 1517165 D 318167 CDS YP_749975.1 114562462 4278395 1518334..1518972 1 NC_008345.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1518972 rnhB 4278395 rnhB Shewanella frigidimarina NCIMB 400 ribonuclease HII YP_749975.1 1518334 D 318167 CDS YP_749976.1 114562463 4278396 1519083..1522559 1 NC_008345.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1522559 dnaE 4278396 dnaE Shewanella frigidimarina NCIMB 400 DNA polymerase III subunit alpha YP_749976.1 1519083 D 318167 CDS YP_749977.1 114562464 4278397 1522569..1524035 1 NC_008345.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase-like; PFAM: PP-loop domain protein; KEGG: son:SO1645 cell cycle protein MesJ; tRNA(Ile)-lysidine synthetase 1524035 4278397 Sfri_1286 Shewanella frigidimarina NCIMB 400 tRNA(Ile)-lysidine synthetase YP_749977.1 1522569 D 318167 CDS YP_749978.1 114562465 4278398 1524300..1525889 1 NC_008345.1 PFAM: peptidase M28; KEGG: son:SO2198 hypothetical aminopeptidase; peptidase M28 1525889 4278398 Sfri_1287 Shewanella frigidimarina NCIMB 400 peptidase M28 YP_749978.1 1524300 D 318167 CDS YP_749979.1 114562466 4278486 1526736..1527998 1 NC_008345.1 hypothetical protein 1527998 4278486 Sfri_1288 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749979.1 1526736 D 318167 CDS YP_749980.1 114562467 4278487 complement(1528484..1529527) 1 NC_008345.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: sde:Sde_3077 response regulator receiver domain protein (CheY-like); transposase IS116/IS110/IS902 family protein 1529527 4278487 Sfri_1289 Shewanella frigidimarina NCIMB 400 transposase IS116/IS110/IS902 family protein YP_749980.1 1528484 R 318167 CDS YP_749981.1 114562468 4278488 complement(1530169..1531263) 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vvu:VV11783 acetyltransferase; N-acetyltransferase GCN5 1531263 4278488 Sfri_1290 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_749981.1 1530169 R 318167 CDS YP_749982.1 114562469 4278489 1531339..1532790 1 NC_008345.1 PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: vch:VC2333 ribosomal protein S6 modification protein-related protein; RimK domain-containing protein ATP-grasp 1532790 4278489 Sfri_1291 Shewanella frigidimarina NCIMB 400 RimK domain-containing protein ATP-grasp YP_749982.1 1531339 D 318167 CDS YP_749983.1 114562470 4278490 complement(1532879..1533760) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1646 GGDEF family protein; diguanylate cyclase 1533760 4278490 Sfri_1292 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_749983.1 1532879 R 318167 CDS YP_749984.1 114562471 4278491 1533923..1535875 1 NC_008345.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: son:SO1647 glutathione-regulated potassium-efflux system protein KefB, putative; potassium efflux system protein 1535875 4278491 Sfri_1293 Shewanella frigidimarina NCIMB 400 potassium efflux system protein YP_749984.1 1533923 D 318167 CDS YP_749985.1 114562472 4278492 1536058..1536594 1 NC_008345.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pha:PSHAb0332 putative RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor 1536594 4278492 Sfri_1294 Shewanella frigidimarina NCIMB 400 ECF subfamily RNA polymerase sigma-24 factor YP_749985.1 1536058 D 318167 CDS YP_749986.1 114562473 4278493 1536591..1537304 1 NC_008345.1 KEGG: pha:PSHAb0331 hypothetical protein; hypothetical protein 1537304 4278493 Sfri_1295 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749986.1 1536591 D 318167 CDS YP_749987.1 114562474 4278494 1537676..1539262 1 NC_008345.1 KEGG: pha:PSHAb0330 conserved protein of unknown function; putative secreted protein; hypothetical protein 1539262 4278494 Sfri_1296 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749987.1 1537676 D 318167 CDS YP_749988.1 114562475 4278495 1539273..1539815 1 NC_008345.1 KEGG: pha:PSHAb0329 putative unknown lipoprotein; hypothetical protein 1539815 4278495 Sfri_1297 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749988.1 1539273 D 318167 CDS YP_749989.1 114562476 4278496 1539988..1541124 1 NC_008345.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: pha:PSHAb0328 putative orphan protein; putative signal peptide; TPR repeat-containing protein 1541124 4278496 Sfri_1298 Shewanella frigidimarina NCIMB 400 TPR repeat-containing protein YP_749989.1 1539988 D 318167 CDS YP_749990.1 114562477 4278497 1541135..1542259 1 NC_008345.1 KEGG: pha:PSHAb0327 hypothetical protein; hypothetical protein 1542259 4278497 Sfri_1299 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749990.1 1541135 D 318167 CDS YP_749991.1 114562478 4278498 1542734..1545946 1 NC_008345.1 PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD/DEAH box helicase domain protein; KEGG: son:SO1651 Snf2 family protein; SNF2-related protein 1545946 4278498 Sfri_1300 Shewanella frigidimarina NCIMB 400 SNF2-related protein YP_749991.1 1542734 D 318167 CDS YP_749992.1 114562479 4278499 1546158..1546505 1 NC_008345.1 KEGG: pha:PSHAb0422 putative orphan protein; putative orphan protein 1546505 4278499 Sfri_1301 Shewanella frigidimarina NCIMB 400 putative orphan protein YP_749992.1 1546158 D 318167 CDS YP_749993.1 114562480 4278500 1547241..1548833 1 NC_008345.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1548833 mdoG 4278500 mdoG Shewanella frigidimarina NCIMB 400 glucan biosynthesis protein G YP_749993.1 1547241 D 318167 CDS YP_749994.1 114562481 4278501 1548830..1550950 1 NC_008345.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1550950 4278501 Sfri_1303 Shewanella frigidimarina NCIMB 400 glucosyltransferase MdoH YP_749994.1 1548830 D 318167 CDS YP_749995.1 114562482 4278502 complement(1551100..1552104) 1 NC_008345.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: dsy:DSY3515 hypothetical protein; NADH:flavin oxidoreductase 1552104 4278502 Sfri_1304 Shewanella frigidimarina NCIMB 400 NADH:flavin oxidoreductase YP_749995.1 1551100 R 318167 CDS YP_749996.1 114562483 4278503 complement(1552114..1552728) 1 NC_008345.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: syn:slr1627 hypothetical protein; lysine exporter protein LysE/YggA 1552728 4278503 Sfri_1305 Shewanella frigidimarina NCIMB 400 lysine exporter protein LysE/YggA YP_749996.1 1552114 R 318167 CDS YP_749997.1 114562484 4277368 1552976..1553446 1 NC_008345.1 PFAM: DTW domain containing protein; KEGG: cps:CPS_2423 hypothetical protein; DTW domain-containing protein 1553446 4277368 Sfri_1306 Shewanella frigidimarina NCIMB 400 DTW domain-containing protein YP_749997.1 1552976 D 318167 CDS YP_749998.1 114562485 4277369 complement(1553519..1556182) 1 NC_008345.1 PFAM: glycoside hydrolase, family 3 domain protein; PA14 domain protein; KEGG: sde:Sde_2674 ribosome-binding factor A; Beta-glucosidase 1556182 4277369 Sfri_1307 Shewanella frigidimarina NCIMB 400 Beta-glucosidase YP_749998.1 1553519 R 318167 CDS YP_749999.1 114562486 4277370 complement(1556198..1556959) 1 NC_008345.1 KEGG: sde:Sde_1104 hypothetical protein; hypothetical protein 1556959 4277370 Sfri_1308 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_749999.1 1556198 R 318167 CDS YP_750000.1 114562487 4277371 complement(1556969..1558456) 1 NC_008345.1 PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sde:Sde_1104 hypothetical protein; tryptophan halogenase 1558456 4277371 Sfri_1309 Shewanella frigidimarina NCIMB 400 tryptophan halogenase YP_750000.1 1556969 R 318167 CDS YP_750001.1 114562488 4277372 complement(1558499..1559518) 1 NC_008345.1 SMART: transcription factor jumonji, jmjC domain protein; KEGG: sde:Sde_2829 PASs1-related protein; transcription factor jumonji domain-containing protein 1559518 4277372 Sfri_1310 Shewanella frigidimarina NCIMB 400 transcription factor jumonji domain-containing protein YP_750001.1 1558499 R 318167 CDS YP_750002.1 114562489 4277373 complement(1559524..1560246) 1 NC_008345.1 PFAM: SapC family protein; KEGG: sde:Sde_2830 SapC related protein; SapC family protein 1560246 4277373 Sfri_1311 Shewanella frigidimarina NCIMB 400 SapC family protein YP_750002.1 1559524 R 318167 CDS YP_750003.1 114562490 4277374 complement(1560357..1561934) 1 NC_008345.1 PFAM: tryptophan halogenase; KEGG: cps:CPS_3699 putative tryptophan halogenase; tryptophan halogenase 1561934 4277374 Sfri_1312 Shewanella frigidimarina NCIMB 400 tryptophan halogenase YP_750003.1 1560357 R 318167 CDS YP_750004.1 114562491 4277375 complement(1562246..1565182) 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcv:XCV4138 TonB-dependent outer membrane receptor; TonB-dependent receptor, plug 1565182 4277375 Sfri_1313 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor, plug YP_750004.1 1562246 R 318167 CDS YP_750005.1 114562492 4277376 complement(1565677..1566735) 1 NC_008345.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cps:CPS_3709 galactose operon repressor; transcriptional regulator, LacI family protein 1566735 4277376 Sfri_1314 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LacI family protein YP_750005.1 1565677 R 318167 CDS YP_750006.1 114562493 4277377 complement(1566740..1568068) 1 NC_008345.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3732 sugar:cation symporter family protein; sugar (glycoside-Pentoside-hexuronide) transporter 1568068 4277377 Sfri_1315 Shewanella frigidimarina NCIMB 400 sugar (glycoside-Pentoside-hexuronide) transporter YP_750006.1 1566740 R 318167 CDS YP_750007.1 114562494 4277378 complement(1568160..1569491) 1 NC_008345.1 PFAM: glycoside hydrolase, family 1; KEGG: cps:CPS_3706 beta-glucosidase; Beta-glucosidase 1569491 4277378 Sfri_1316 Shewanella frigidimarina NCIMB 400 Beta-glucosidase YP_750007.1 1568160 R 318167 CDS YP_750008.1 114562495 4277379 1569874..1571181 1 NC_008345.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3705 glucose/galactose transporter family protein; glucose/galactose transporter 1571181 4277379 Sfri_1317 Shewanella frigidimarina NCIMB 400 glucose/galactose transporter YP_750008.1 1569874 D 318167 CDS YP_750009.1 114562496 4277380 1571191..1573833 1 NC_008345.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: sde:Sde_0245 beta-glucosidase; Beta-glucosidase 1573833 4277380 Sfri_1318 Shewanella frigidimarina NCIMB 400 Beta-glucosidase YP_750009.1 1571191 D 318167 CDS YP_750010.1 114562497 4277381 1573973..1575049 1 NC_008345.1 PFAM: glycoside hydrolase, family 16; KEGG: vvy:VVA0140 beta-glucanase; glucan endo-1,3-beta-D-glucosidase 1575049 4277381 Sfri_1319 Shewanella frigidimarina NCIMB 400 glucan endo-1,3-beta-D-glucosidase YP_750010.1 1573973 D 318167 CDS YP_750011.1 114562498 4277382 1575452..1576252 1 NC_008345.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: son:SO1655 cysQ protein; 3'(2'),5'-bisphosphate nucleotidase 1576252 4277382 Sfri_1320 Shewanella frigidimarina NCIMB 400 3'(2'),5'-bisphosphate nucleotidase YP_750011.1 1575452 D 318167 CDS YP_750012.1 114562499 4277383 1576326..1577231 1 NC_008345.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 1577231 4277383 Sfri_1321 Shewanella frigidimarina NCIMB 400 fructokinase YP_750012.1 1576326 D 318167 CDS YP_750013.1 114562500 4277384 1577397..1578155 1 NC_008345.1 PFAM: protein of unknown function DUF218; KEGG: son:SO1657 hypothetical protein; hypothetical protein 1578155 4277384 Sfri_1322 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750013.1 1577397 D 318167 CDS YP_750014.1 114562501 4277997 1578245..1578940 1 NC_008345.1 KEGG: son:SO1658 hypothetical protein; hypothetical protein 1578940 4277997 Sfri_1323 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750014.1 1578245 D 318167 CDS YP_750015.1 114562502 4277998 1578972..1579385 1 NC_008345.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: son:SO0883 hypothetical protein; glutathione-dependent formaldehyde-activating protein 1579385 4277998 Sfri_1324 Shewanella frigidimarina NCIMB 400 glutathione-dependent formaldehyde-activating protein YP_750015.1 1578972 D 318167 CDS YP_750016.1 114562503 4277999 complement(1579382..1579741) 1 NC_008345.1 PFAM: protein of unknown function DUF583; KEGG: son:SO1662 hypothetical Ccm2-related protein; hypothetical protein 1579741 4277999 Sfri_1325 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750016.1 1579382 R 318167 CDS YP_750017.1 114562504 4278000 complement(1579866..1580351) 1 NC_008345.1 TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1663 ferredoxin-type protein NapF; ferredoxin-type protein NapF 1580351 4278000 Sfri_1326 Shewanella frigidimarina NCIMB 400 ferredoxin-type protein NapF YP_750017.1 1579866 R 318167 CDS YP_750018.1 114562505 4278001 complement(1580674..1581699) 1 NC_008345.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO1664 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 1581699 4278001 Sfri_1327 Shewanella frigidimarina NCIMB 400 UDP-glucose 4-epimerase YP_750018.1 1580674 R 318167 CDS YP_750019.1 114562506 4278002 1582052..1582849 1 NC_008345.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 1582849 phhA 4278002 phhA Shewanella frigidimarina NCIMB 400 phenylalanine 4-monooxygenase YP_750019.1 1582052 D 318167 CDS YP_750020.1 114562507 4278003 1582923..1583261 1 NC_008345.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 1583261 phhB 4278003 phhB Shewanella frigidimarina NCIMB 400 pterin-4-alpha-carbinolamine dehydratase YP_750020.1 1582923 D 318167 CDS YP_750021.1 114562508 4278004 1583426..1584964 1 NC_008345.1 PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: son:SO1669 transcriptional regulatory protein TyrR; transcriptional regulator TyrR 1584964 4278004 Sfri_1330 Shewanella frigidimarina NCIMB 400 transcriptional regulator TyrR YP_750021.1 1583426 D 318167 CDS YP_750022.1 114562509 4278005 1585202..1586188 1 NC_008345.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1670 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase 1586188 4278005 Sfri_1331 Shewanella frigidimarina NCIMB 400 fumarylacetoacetate (FAA) hydrolase YP_750022.1 1585202 D 318167 CDS YP_750023.1 114562510 4278006 1586287..1586937 1 NC_008345.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO1671 glutathione S-transferase family protein; maleylacetoacetate isomerase 1586937 4278006 Sfri_1332 Shewanella frigidimarina NCIMB 400 maleylacetoacetate isomerase YP_750023.1 1586287 D 318167 CDS YP_750024.1 114562511 4278007 1587002..1587604 1 NC_008345.1 PFAM: protein of unknown function DUF925; KEGG: son:SO1672 hypothetical protein; hypothetical protein 1587604 4278007 Sfri_1333 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750024.1 1587002 D 318167 CDS YP_750025.1 114562512 4278008 1587851..1588498 1 NC_008345.1 receptor for colicin S4; outer membrane protein W 1588498 4278008 Sfri_1334 Shewanella frigidimarina NCIMB 400 outer membrane protein W YP_750025.1 1587851 D 318167 CDS YP_750026.1 114562513 4278009 complement(1588578..1589321) 1 NC_008345.1 KEGG: son:SO1674 short chain dehydrogenase family protein; short chain dehydrogenase family protein 1589321 4278009 Sfri_1335 Shewanella frigidimarina NCIMB 400 short chain dehydrogenase family protein YP_750026.1 1588578 R 318167 CDS YP_750027.1 114562514 4278010 1589683..1590627 1 NC_008345.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 1590627 4278010 Sfri_1336 Shewanella frigidimarina NCIMB 400 homoserine O-succinyltransferase YP_750027.1 1589683 D 318167 CDS YP_750028.1 114562515 4278011 1590741..1592648 1 NC_008345.1 KEGG: bba:Bd3766 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 1592648 4278011 Sfri_1337 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_750028.1 1590741 D 318167 CDS YP_750029.1 114562516 4278012 1592959..1594149 1 NC_008345.1 KEGG: son:SO1677 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 1594149 4278012 Sfri_1338 Shewanella frigidimarina NCIMB 400 acetyl-CoA acetyltransferase YP_750029.1 1592959 D 318167 CDS YP_750030.1 114562517 4278013 1594314..1595807 1 NC_008345.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: son:SO1678 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1595807 4278013 Sfri_1339 Shewanella frigidimarina NCIMB 400 methylmalonate-semialdehyde dehydrogenase YP_750030.1 1594314 D 318167 CDS YP_750031.1 114562518 4278014 1595973..1597130 1 NC_008345.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO1679 acyl-CoA dehydrogenase family protein; butyryl-CoA dehydrogenase 1597130 4278014 Sfri_1340 Shewanella frigidimarina NCIMB 400 butyryl-CoA dehydrogenase YP_750031.1 1595973 D 318167 CDS YP_750032.1 114562519 4277875 1597181..1597963 1 NC_008345.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1597963 4277875 Sfri_1341 Shewanella frigidimarina NCIMB 400 enoyl-CoA hydratase YP_750032.1 1597181 D 318167 CDS YP_750033.1 114562520 4277876 1597963..1599081 1 NC_008345.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO1681 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 1599081 4277876 Sfri_1342 Shewanella frigidimarina NCIMB 400 enoyl-CoA hydratase/isomerase YP_750033.1 1597963 D 318167 CDS YP_750034.1 114562521 4277877 1599096..1599995 1 NC_008345.1 KEGG: son:SO1682 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 1599995 4277877 Sfri_1343 Shewanella frigidimarina NCIMB 400 3-hydroxyisobutyrate dehydrogenase YP_750034.1 1599096 D 318167 CDS YP_750035.1 114562522 4277878 1600008..1600766 1 NC_008345.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1600766 fabG 4277878 fabG Shewanella frigidimarina NCIMB 400 3-ketoacyl-ACP reductase YP_750035.1 1600008 D 318167 CDS YP_750036.1 114562523 4277879 1600968..1601174 1 NC_008345.1 KEGG: son:SO1685 hypothetical protein; hypothetical protein 1601174 4277879 Sfri_1345 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750036.1 1600968 D 318167 CDS YP_750037.1 114562524 4277880 1601182..1602126 1 NC_008345.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pha:PSHAa1329 hypothetical protein; hypothetical protein 1602126 4277880 Sfri_1346 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750037.1 1601182 D 318167 CDS YP_750038.1 114562525 4277881 1602228..1603148 1 NC_008345.1 KEGG: vpa:VPA0405 hypothetical protein; hypothetical protein 1603148 4277881 Sfri_1347 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750038.1 1602228 D 318167 CDS YP_750039.1 114562526 4277882 1603644..1604594 1 NC_008345.1 hypothetical protein 1604594 4277882 Sfri_1348 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750039.1 1603644 D 318167 CDS YP_750040.1 114562527 4277883 1605047..1606615 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1690 ABC transporter, ATP-binding protein; ABC transporter 1606615 4277883 Sfri_1349 Shewanella frigidimarina NCIMB 400 ABC transporter YP_750040.1 1605047 D 318167 CDS YP_750041.1 114562528 4277884 1606744..1607139 1 NC_008345.1 KEGG: son:SO1702 hypothetical protein; hypothetical protein 1607139 4277884 Sfri_1350 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750041.1 1606744 D 318167 CDS YP_750042.1 114562529 4277885 1607166..1607972 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: cgb:cg1295 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily); alpha/beta hydrolase 1607972 4277885 Sfri_1351 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase YP_750042.1 1607166 D 318167 CDS YP_750043.1 114562530 4277886 1608270..1610276 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: cps:CPS_1937 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1610276 4277886 Sfri_1352 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_750043.1 1608270 D 318167 CDS YP_750044.1 114562531 4277887 complement(1610738..1611280) 1 NC_008345.1 PFAM: protein of unknown function DUF1415; KEGG: son:SO1715 hypothetical protein; hypothetical protein 1611280 4277887 Sfri_1353 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750044.1 1610738 R 318167 CDS YP_750045.1 114562532 4277888 complement(1611310..1611915) 1 NC_008345.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO1716 transporter, LysE family; lysine exporter protein LysE/YggA 1611915 4277888 Sfri_1354 Shewanella frigidimarina NCIMB 400 lysine exporter protein LysE/YggA YP_750045.1 1611310 R 318167 CDS YP_750046.1 114562533 4277889 complement(1612094..1612912) 1 NC_008345.1 KEGG: son:SO1718 hypothetical protein; hypothetical protein 1612912 4277889 Sfri_1355 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750046.1 1612094 R 318167 CDS YP_750047.1 114562534 4277890 complement(1613007..1613513) 1 NC_008345.1 PFAM: amino acid-binding ACT domain protein; KEGG: son:SO1722 ACT domain protein; amino acid-binding ACT domain-containing protein 1613513 4277890 Sfri_1356 Shewanella frigidimarina NCIMB 400 amino acid-binding ACT domain-containing protein YP_750047.1 1613007 R 318167 CDS YP_750048.1 114562535 4277891 1613710..1615965 1 NC_008345.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1723 phosphate ABC transporter, permease protein, putative; binding-protein-dependent transport system inner membrane protein 1615965 4277891 Sfri_1357 Shewanella frigidimarina NCIMB 400 binding-protein-dependent transport system inner membrane protein YP_750048.1 1613710 D 318167 CDS YP_750049.1 114562536 4276965 1616024..1617685 1 NC_008345.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1724 phosphate ABC transporter, permease protein, putative; phosphate ABC transporter permease 1617685 4276965 Sfri_1358 Shewanella frigidimarina NCIMB 400 phosphate ABC transporter permease YP_750049.1 1616024 D 318167 CDS YP_750050.1 114562537 4276966 1617712..1618530 1 NC_008345.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1618530 4276966 Sfri_1359 Shewanella frigidimarina NCIMB 400 phosphate transporter ATP-binding protein YP_750050.1 1617712 D 318167 CDS YP_750051.1 114562538 4276967 1618588..1619283 1 NC_008345.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 1619283 4276967 Sfri_1360 Shewanella frigidimarina NCIMB 400 transcriptional regulator PhoU YP_750051.1 1618588 D 318167 CDS YP_750052.1 114562539 4276968 1619423..1620004 1 NC_008345.1 KEGG: son:SO1736 hypothetical protein; hypothetical protein 1620004 4276968 Sfri_1361 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750052.1 1619423 D 318167 CDS YP_750053.1 114562540 4276969 1620297..1620668 1 NC_008345.1 SMART: HNH nuclease; KEGG: son:SO1738 hypothetical protein; hypothetical protein 1620668 4276969 Sfri_1362 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750053.1 1620297 D 318167 CDS YP_750054.1 114562541 4276970 complement(1621144..1621371) 1 NC_008345.1 PFAM: protein of unknown function DUF1289; KEGG: son:SO1739 hypothetical protein; hypothetical protein 1621371 4276970 Sfri_1363 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750054.1 1621144 R 318167 CDS YP_750055.1 114562542 4276971 1621451..1622767 1 NC_008345.1 KEGG: son:SO1741 hypothetical protein; hypothetical protein 1622767 4276971 Sfri_1364 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750055.1 1621451 D 318167 CDS YP_750056.1 114562543 4276972 1623023..1624072 1 NC_008345.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1624072 4276972 Sfri_1365 Shewanella frigidimarina NCIMB 400 3-oxoacyl-ACP synthase YP_750056.1 1623023 D 318167 CDS YP_750057.1 114562544 4276973 1624131..1625006 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO1743 hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase 1625006 4276973 Sfri_1366 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase YP_750057.1 1624131 D 318167 CDS YP_750058.1 114562545 4276974 1625129..1626823 1 NC_008345.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 1626823 4276974 Sfri_1367 Shewanella frigidimarina NCIMB 400 peptide synthase YP_750058.1 1625129 D 318167 CDS YP_750059.1 114562546 4276975 1626857..1627906 1 NC_008345.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: ppr:PBPRA1465 steroid dehydrogenase; 3-beta hydroxysteroid dehydrogenase/isomerase 1627906 4276975 Sfri_1368 Shewanella frigidimarina NCIMB 400 3-beta hydroxysteroid dehydrogenase/isomerase YP_750059.1 1626857 D 318167 CDS YP_750060.1 114562547 4276976 1628128..1629312 1 NC_008345.1 KEGG: son:SO1812 methionine gamma-lyase; TIGRFAM: methionine gamma-lyase; PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; methionine gamma-lyase 1629312 4276976 Sfri_1369 Shewanella frigidimarina NCIMB 400 methionine gamma-lyase YP_750060.1 1628128 D 318167 CDS YP_750061.1 114562548 4276977 complement(1629729..1630121) 1 NC_008345.1 hypothetical protein 1630121 4276977 Sfri_1370 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750061.1 1629729 R 318167 CDS YP_750062.1 114562549 4276978 complement(1630121..1632211) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: pha:PSHAa1795 hypothetical protein; diguanylate cyclase/phosphodiesterase 1632211 4276978 Sfri_1371 Shewanella frigidimarina NCIMB 400 diguanylate cyclase/phosphodiesterase YP_750062.1 1630121 R 318167 CDS YP_750063.1 114562550 4276979 complement(1632239..1632841) 1 NC_008345.1 KEGG: pha:PSHAa1794 hypothetical protein; hypothetical protein 1632841 4276979 Sfri_1372 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750063.1 1632239 R 318167 CDS YP_750064.1 114562551 4276980 1634326..1635492 1 NC_008345.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: ppr:PBPRA2675 putative nucleotide sugar dehydrogenase; UDP-glucose 6-dehydrogenase 1635492 4276980 Sfri_1373 Shewanella frigidimarina NCIMB 400 UDP-glucose 6-dehydrogenase YP_750064.1 1634326 D 318167 CDS YP_750065.1 114562552 4276981 1635522..1636535 1 NC_008345.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: ppr:PBPRA0207 putative nucleotide sugar epimerase; NAD-dependent epimerase/dehydratase 1636535 4276981 Sfri_1374 Shewanella frigidimarina NCIMB 400 NAD-dependent epimerase/dehydratase YP_750065.1 1635522 D 318167 CDS YP_750066.1 114562553 4276982 1636544..1637347 1 NC_008345.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: hch:HCH_04683 glycosyltransferase; WecB/TagA/CpsF family glycosyl transferase 1637347 4276982 Sfri_1375 Shewanella frigidimarina NCIMB 400 WecB/TagA/CpsF family glycosyl transferase YP_750066.1 1636544 D 318167 CDS YP_750067.1 114562554 4277000 1637500..1638606 1 NC_008345.1 PFAM: glycosyl transferase, group 1; KEGG: pfo:Pfl_2819 glycosyl transferase, group 1; group 1 glycosyl transferase 1638606 4277000 Sfri_1376 Shewanella frigidimarina NCIMB 400 group 1 glycosyl transferase YP_750067.1 1637500 D 318167 CDS YP_750068.1 114562555 4277001 1638606..1639712 1 NC_008345.1 PFAM: glycosyl transferase, group 1; KEGG: hch:HCH_04684 glycosyltransferase; group 1 glycosyl transferase 1639712 4277001 Sfri_1377 Shewanella frigidimarina NCIMB 400 group 1 glycosyl transferase YP_750068.1 1638606 D 318167 CDS YP_750069.1 114562556 4277002 1639702..1640952 1 NC_008345.1 KEGG: pfo:Pfl_2821 O-antigen polymerase; O-antigen polymerase 1640952 4277002 Sfri_1378 Shewanella frigidimarina NCIMB 400 O-antigen polymerase YP_750069.1 1639702 D 318167 CDS YP_750070.1 114562557 4277003 1640999..1641892 1 NC_008345.1 PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl_2822 glycosyl transferase, family 2; glycosyl transferase family protein 1641892 4277003 Sfri_1379 Shewanella frigidimarina NCIMB 400 glycosyl transferase family protein YP_750070.1 1640999 D 318167 CDS YP_750071.1 114562558 4277004 1641894..1643309 1 NC_008345.1 PFAM: polysaccharide biosynthesis protein; KEGG: pfo:Pfl_2823 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1643309 4277004 Sfri_1380 Shewanella frigidimarina NCIMB 400 polysaccharide biosynthesis protein YP_750071.1 1641894 D 318167 CDS YP_750072.1 114562559 4277005 1644675..1646075 1 NC_008345.1 PFAM: sugar transferase; KEGG: pha:PSHAa1783 UDP-glucose lipid carrier transferase; sugar transferase 1646075 4277005 Sfri_1382 Shewanella frigidimarina NCIMB 400 sugar transferase YP_750072.1 1644675 D 318167 CDS YP_750073.1 114562560 4277006 1646576..1647787 1 NC_008345.1 KEGG: pha:PSHAa1782 hypothetical protein; hypothetical protein 1647787 4277006 Sfri_1383 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750073.1 1646576 D 318167 CDS YP_750074.1 114562561 4277007 1647795..1648331 1 NC_008345.1 PFAM: polysaccharide export protein; KEGG: pha:PSHAa1781 polysaccharide export-related protein; polysaccharide export protein 1648331 4277007 Sfri_1384 Shewanella frigidimarina NCIMB 400 polysaccharide export protein YP_750074.1 1647795 D 318167 CDS YP_750075.1 114562562 4277008 1648331..1650601 1 NC_008345.1 PFAM: lipopolysaccharide biosynthesis; KEGG: pha:PSHAa1780 exopolysaccharide biosynthesis protein; hypothetical protein 1650601 4277008 Sfri_1385 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750075.1 1648331 D 318167 CDS YP_750076.1 114562563 4277009 1650598..1651335 1 NC_008345.1 PFAM: PHP C-terminal domain protein; KEGG: pha:PSHAa1779 capsular polysaccharide biosynthesis, CapC; phosphotransferase domain-containing protein 1651335 4277009 Sfri_1386 Shewanella frigidimarina NCIMB 400 phosphotransferase domain-containing protein YP_750076.1 1650598 D 318167 CDS YP_750077.1 114562564 4277010 1651335..1652033 1 NC_008345.1 KEGG: pha:PSHAa1778 hypothetical protein; hypothetical protein 1652033 4277010 Sfri_1387 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750077.1 1651335 D 318167 CDS YP_750078.1 114562565 4277011 1652033..1653391 1 NC_008345.1 PFAM: O-antigen polymerase; KEGG: pha:PSHAa1797 hypothetical protein; O-antigen polymerase 1653391 4277011 Sfri_1388 Shewanella frigidimarina NCIMB 400 O-antigen polymerase YP_750078.1 1652033 D 318167 CDS YP_750079.1 114562566 4277012 1653825..1654715 1 NC_008345.1 KEGG: ppr:PBPRA2674 putative UTP-glucose-1-phosphateuridylyltransferase, galU; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 1654715 4277012 Sfri_1389 Shewanella frigidimarina NCIMB 400 UTP-glucose-1-phosphate uridylyltransferase YP_750079.1 1653825 D 318167 CDS YP_750080.1 114562567 4277013 complement(1655505..1657598) 1 NC_008345.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO3073 hypothetical protein; FAD dependent oxidoreductase 1657598 4277013 Sfri_1390 Shewanella frigidimarina NCIMB 400 FAD dependent oxidoreductase YP_750080.1 1655505 R 318167 CDS YP_750081.1 114562568 4277014 1657707..1658945 1 NC_008345.1 PFAM: beta-ketoacyl synthase; KEGG: son:SO3072 3-oxoacyl-(acyl-carrier-protein) synthase I; beta-ketoacyl synthase 1658945 4277014 Sfri_1391 Shewanella frigidimarina NCIMB 400 beta-ketoacyl synthase YP_750081.1 1657707 D 318167 CDS YP_750082.1 114562569 4277015 1659372..1660508 1 NC_008345.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO3071 erythronate-4-phosphate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 1660508 4277015 Sfri_1392 Shewanella frigidimarina NCIMB 400 D-isomer specific 2-hydroxyacid dehydrogenase YP_750082.1 1659372 D 318167 CDS YP_750083.1 114562570 4277016 1660688..1661704 1 NC_008345.1 KEGG: son:SO3070 aspartate semialdehyde dehydrogenese; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; aspartate-semialdehyde dehydrogenase 1661704 4277016 Sfri_1393 Shewanella frigidimarina NCIMB 400 aspartate-semialdehyde dehydrogenase YP_750083.1 1660688 D 318167 CDS YP_750084.1 114562571 4277087 1661995..1666221 1 NC_008345.1 KEGG: son:SO3069 putative membrane protein; ATPase 1666221 4277087 Sfri_1394 Shewanella frigidimarina NCIMB 400 ATPase YP_750084.1 1661995 D 318167 CDS YP_750085.1 114562572 4277088 1666350..1667135 1 NC_008345.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1667135 truA 4277088 truA Shewanella frigidimarina NCIMB 400 tRNA pseudouridine synthase A YP_750085.1 1666350 D 318167 CDS YP_750086.1 114562573 4277089 1667253..1668530 1 NC_008345.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO3067 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1668530 4277089 Sfri_1396 Shewanella frigidimarina NCIMB 400 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_750086.1 1667253 D 318167 CDS YP_750087.1 114562574 4277090 1668602..1669228 1 NC_008345.1 PFAM: Sporulation domain protein; KEGG: son:SO3066 DedD protein; sporulation domain-containing protein 1669228 4277090 Sfri_1397 Shewanella frigidimarina NCIMB 400 sporulation domain-containing protein YP_750087.1 1668602 D 318167 CDS YP_750088.1 114562575 4277091 1669381..1669869 1 NC_008345.1 PFAM: Colicin V production protein; KEGG: son:SO3065 colicin V production protein; colicin V production protein 1669869 4277091 Sfri_1398 Shewanella frigidimarina NCIMB 400 colicin V production protein YP_750088.1 1669381 D 318167 CDS YP_750089.1 114562576 4277092 1669904..1671418 1 NC_008345.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1671418 4277092 Sfri_1399 Shewanella frigidimarina NCIMB 400 amidophosphoribosyltransferase YP_750089.1 1669904 D 318167 CDS YP_750090.1 114562577 4277093 complement(1671977..1672681) 1 NC_008345.1 KEGG: cps:CPS_2668 conserved hypothetical protein; hypothetical protein 1672681 4277093 Sfri_1400 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750090.1 1671977 R 318167 CDS YP_750091.1 114562578 4277094 1672852..1674813 1 NC_008345.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1674813 4277094 Sfri_1401 Shewanella frigidimarina NCIMB 400 DNA topoisomerase III YP_750091.1 1672852 D 318167 CDS YP_750092.1 114562579 4277095 1674982..1675575 1 NC_008345.1 KEGG: pha:PSHAa1583 peptide methionine sulfoxide reductase MsrA 2 (protein-methionine-S-oxide reductase 2) (peptide Met(O) reductase 2); TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 1675575 4277095 Sfri_1402 Shewanella frigidimarina NCIMB 400 peptide methionine sulfoxide reductase YP_750092.1 1674982 D 318167 CDS YP_750093.1 114562580 4277096 1675908..1676066 1 NC_008345.1 KEGG: cvi:CV3595 hypothetical protein; hypothetical protein 1676066 4277096 Sfri_1403 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750093.1 1675908 D 318167 CDS YP_750094.1 114562581 4277097 complement(1676179..1677114) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_1392 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 1677114 4277097 Sfri_1404 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_750094.1 1676179 R 318167 CDS YP_750095.1 114562582 4277098 1677237..1678262 1 NC_008345.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cps:CPS_1391 oxidoreductase, zinc-binding; alcohol dehydrogenase 1678262 4277098 Sfri_1405 Shewanella frigidimarina NCIMB 400 alcohol dehydrogenase YP_750095.1 1677237 D 318167 CDS YP_750096.1 114562583 4277099 1678323..1678613 1 NC_008345.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rba:RB1487 hypothetical protein; antibiotic biosynthesis monooxygenase 1678613 4277099 Sfri_1406 Shewanella frigidimarina NCIMB 400 antibiotic biosynthesis monooxygenase YP_750096.1 1678323 D 318167 CDS YP_750097.1 114562584 4277100 1678752..1680221 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VPA0595 ATP-binding component of molybdate transport system; ABC transporter 1680221 4277100 Sfri_1407 Shewanella frigidimarina NCIMB 400 ABC transporter YP_750097.1 1678752 D 318167 CDS YP_750098.1 114562585 4277101 1680444..1680989 1 NC_008345.1 PFAM: Redoxin domain protein; KEGG: tbd:Tbd_0156 hypothetical protein; redoxin domain-containing protein 1680989 4277101 Sfri_1408 Shewanella frigidimarina NCIMB 400 redoxin domain-containing protein YP_750098.1 1680444 D 318167 CDS YP_750099.1 114562586 4277102 1681272..1681928 1 NC_008345.1 PFAM: nitroreductase; KEGG: pha:PSHAa1234 major NAD(P)H-flavin oxidoreductase; nitroreductase 1681928 4277102 Sfri_1409 Shewanella frigidimarina NCIMB 400 nitroreductase YP_750099.1 1681272 D 318167 CDS YP_750100.1 114562587 4277103 complement(1682047..1683411) 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO3055 proline iminopeptidase; alpha/beta hydrolase 1683411 4277103 Sfri_1410 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase YP_750100.1 1682047 R 318167 CDS YP_750101.1 114562588 4277104 1683518..1684162 1 NC_008345.1 PFAM: beta-lactamase domain protein; KEGG: son:SO3054 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 1684162 4277104 Sfri_1411 Shewanella frigidimarina NCIMB 400 beta-lactamase domain-containing protein YP_750101.1 1683518 D 318167 CDS YP_750102.1 114562589 4277910 1684286..1685302 1 NC_008345.1 PFAM: protein of unknown function DUF182; KEGG: son:SO3051 hypothetical xanthine dehydrogenase accessory factor; hypothetical protein 1685302 4277910 Sfri_1412 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750102.1 1684286 D 318167 CDS YP_750103.1 114562590 4277911 1685316..1685924 1 NC_008345.1 KEGG: son:SO3050 hypothetical protein; hypothetical protein 1685924 4277911 Sfri_1413 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750103.1 1685316 D 318167 CDS YP_750104.1 114562591 4277912 1685927..1686379 1 NC_008345.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: son:SO3049 isoquinoline 1-oxidoreductase, alpha subunit, putative; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1686379 4277912 Sfri_1414 Shewanella frigidimarina NCIMB 400 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_750104.1 1685927 D 318167 CDS YP_750105.1 114562592 4277913 1686382..1688625 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: son:SO3048 isoquinoline 1-oxidoreductase, beta subunit, putative; twin-arginine translocation pathway signal 1688625 4277913 Sfri_1415 Shewanella frigidimarina NCIMB 400 twin-arginine translocation pathway signal YP_750105.1 1686382 D 318167 CDS YP_750106.1 114562593 4277914 1688863..1690308 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vch:VCA0773 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1690308 4277914 Sfri_1416 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_750106.1 1688863 D 318167 CDS YP_750107.1 114562594 4277915 1690660..1691241 1 NC_008345.1 KEGG: cps:CPS_0912 hypothetical protein; hypothetical protein 1691241 4277915 Sfri_1417 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750107.1 1690660 D 318167 CDS YP_750108.1 114562595 4277916 1691244..1693577 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: cps:CPS_0913 sensory box sensor/GGDEF/EAL domain protein; diguanylate cyclase/phosphodiesterase 1693577 4277916 Sfri_1418 Shewanella frigidimarina NCIMB 400 diguanylate cyclase/phosphodiesterase YP_750108.1 1691244 D 318167 CDS YP_750109.1 114562596 4277917 1693613..1694866 1 NC_008345.1 KEGG: cps:CPS_0914 hypothetical protein; hypothetical protein 1694866 4277917 Sfri_1419 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750109.1 1693613 D 318167 CDS YP_750110.1 114562597 4277918 complement(1695133..1695939) 1 NC_008345.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 1695939 4277918 Sfri_1420 Shewanella frigidimarina NCIMB 400 exonuclease III YP_750110.1 1695133 R 318167 CDS YP_750111.1 114562598 4277919 complement(1695939..1696238) 1 NC_008345.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1696238 4277919 Sfri_1421 Shewanella frigidimarina NCIMB 400 YciI-like protein YP_750111.1 1695939 R 318167 CDS YP_750112.1 114562599 4277920 complement(1696274..1696825) 1 NC_008345.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1696825 4277920 Sfri_1422 Shewanella frigidimarina NCIMB 400 intracellular septation protein A YP_750112.1 1696274 R 318167 CDS YP_750113.1 114562600 4277921 complement(1696946..1697839) 1 NC_008345.1 KEGG: hch:HCH_00813 hypothetical protein; hypothetical protein 1697839 4277921 Sfri_1423 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750113.1 1696946 R 318167 CDS YP_750114.1 114562601 4277922 complement(1697930..1698733) 1 NC_008345.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1698733 trpA 4277922 trpA Shewanella frigidimarina NCIMB 400 tryptophan synthase subunit alpha YP_750114.1 1697930 R 318167 CDS YP_750115.1 114562602 4277923 complement(1698726..1699937) 1 NC_008345.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1699937 4277923 Sfri_1425 Shewanella frigidimarina NCIMB 400 tryptophan synthase subunit beta YP_750115.1 1698726 R 318167 CDS YP_750116.1 114562603 4277924 complement(1699995..1701398) 1 NC_008345.1 Phosphoribosylanthranilate isomerase; monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1701398 4277924 Sfri_1426 Shewanella frigidimarina NCIMB 400 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_750116.1 1699995 R 318167 CDS YP_750117.1 114562604 4277925 complement(1701391..1702434) 1 NC_008345.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1702434 trpD 4277925 trpD Shewanella frigidimarina NCIMB 400 anthranilate phosphoribosyltransferase YP_750117.1 1701391 R 318167 CDS YP_750118.1 114562605 4277926 complement(1702434..1703069) 1 NC_008345.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 1703069 4277926 Sfri_1428 Shewanella frigidimarina NCIMB 400 anthranilate synthase component II YP_750118.1 1702434 R 318167 CDS YP_750119.1 114562606 4277246 complement(1703066..1704637) 1 NC_008345.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1704637 4277246 Sfri_1429 Shewanella frigidimarina NCIMB 400 anthranilate synthase component I YP_750119.1 1703066 R 318167 CDS YP_750120.1 114562607 4277247 1705090..1705950 1 NC_008345.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: son:SO3017 TrpH family protein; phosphotransferase domain-containing protein 1705950 4277247 Sfri_1430 Shewanella frigidimarina NCIMB 400 phosphotransferase domain-containing protein YP_750120.1 1705090 D 318167 CDS YP_750121.1 114562608 4277248 1705947..1706567 1 NC_008345.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain protein; KEGG: son:SO3016 Sua5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 1706567 4277248 Sfri_1431 Shewanella frigidimarina NCIMB 400 Sua5/YciO/YrdC/YwlC family protein YP_750121.1 1705947 D 318167 CDS YP_750122.1 114562609 4277249 1706607..1707395 1 NC_008345.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: son:SO3015 putative segregation and condensation protein A; chromosome segregation and condensation protein ScpA 1707395 4277249 Sfri_1432 Shewanella frigidimarina NCIMB 400 chromosome segregation and condensation protein ScpA YP_750122.1 1706607 D 318167 CDS YP_750123.1 114562610 4277250 1707418..1708155 1 NC_008345.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: son:SO3014 putative segregation and condensation protein B; putative transcriptional regulator 1708155 4277250 Sfri_1433 Shewanella frigidimarina NCIMB 400 putative transcriptional regulator YP_750123.1 1707418 D 318167 CDS YP_750124.1 114562611 4277251 complement(1708152..1709138) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0701 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 1709138 4277251 Sfri_1434 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_750124.1 1708152 R 318167 CDS YP_750125.1 114562612 4277252 1709270..1710349 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRA2319 hypothetical membrane-fusion protein; RND family efflux transporter MFP subunit 1710349 4277252 Sfri_1435 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_750125.1 1709270 D 318167 CDS YP_750126.1 114562613 4277253 1710353..1713418 1 NC_008345.1 PFAM: acriflavin resistance protein; KEGG: ppr:PBPRA2318 hypothetical transporter, AcrB/D/F family; acriflavin resistance protein 1713418 4277253 Sfri_1436 Shewanella frigidimarina NCIMB 400 acriflavin resistance protein YP_750126.1 1710353 D 318167 CDS YP_750127.1 114562614 4277254 1713690..1714562 1 NC_008345.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: eca:ECA2291 putative RNA pseudouridylate synthase; pseudouridine synthase, Rsu 1714562 4277254 Sfri_1437 Shewanella frigidimarina NCIMB 400 pseudouridine synthase, Rsu YP_750127.1 1713690 D 318167 CDS YP_750128.1 114562615 4277255 1714757..1715086 1 NC_008345.1 hypothetical protein 1715086 4277255 Sfri_1438 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750128.1 1714757 D 318167 CDS YP_750129.1 114562616 4277256 complement(1715974..1716249) 1 NC_008345.1 PFAM: histone family protein DNA-binding protein; KEGG: son:SO1863 DNA-binding protein, HU family; histone family protein DNA-binding protein 1716249 4277256 Sfri_1439 Shewanella frigidimarina NCIMB 400 histone family protein DNA-binding protein YP_750129.1 1715974 R 318167 CDS YP_750130.1 114562617 4277257 1716541..1717962 1 NC_008345.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO2109 hypothetical protein; peptidoglycan binding domain-containing protein 1717962 4277257 Sfri_1440 Shewanella frigidimarina NCIMB 400 peptidoglycan binding domain-containing protein YP_750130.1 1716541 D 318167 CDS YP_750131.1 114562618 4277258 1718214..1718765 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; protein of unknown function DUF882; Peptidase M15A; KEGG: son:SO2110 hypothetical protein; twin-arginine translocation pathway signal 1718765 4277258 Sfri_1441 Shewanella frigidimarina NCIMB 400 twin-arginine translocation pathway signal YP_750131.1 1718214 D 318167 CDS YP_750132.1 114562619 4277259 1719245..1719532 1 NC_008345.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1719532 4277259 Sfri_1442 Shewanella frigidimarina NCIMB 400 50S ribosomal protein L25 YP_750132.1 1719245 D 318167 CDS YP_750133.1 114562620 4277260 complement(1719680..1723594) 1 NC_008345.1 PFAM: protein of unknown function DUF490; KEGG: son:SO2113 hypothetical protein; hypothetical protein 1723594 4277260 Sfri_1443 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750133.1 1719680 R 318167 CDS YP_750134.1 114562621 4277261 complement(1723591..1725381) 1 NC_008345.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO2114 hypothetical protein; surface antigen (D15) 1725381 4277261 Sfri_1444 Shewanella frigidimarina NCIMB 400 surface antigen (D15) YP_750134.1 1723591 R 318167 CDS YP_750135.1 114562622 4277262 1725570..1726604 1 NC_008345.1 PFAM: peptidase T2, asparaginase 2; KEGG: son:SO2115 asparaginase family protein; peptidase T2, asparaginase 2 1726604 4277262 Sfri_1445 Shewanella frigidimarina NCIMB 400 peptidase T2, asparaginase 2 YP_750135.1 1725570 D 318167 CDS YP_750136.1 114562623 4277263 1726776..1727192 1 NC_008345.1 PFAM: CBS domain containing protein; KEGG: son:SO2228 CBS domain protein; signal transduction protein 1727192 4277263 Sfri_1446 Shewanella frigidimarina NCIMB 400 signal transduction protein YP_750136.1 1726776 D 318167 CDS YP_750137.1 114562624 4278451 1727270..1731145 1 NC_008345.1 KEGG: son:SO2229 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD/DEAH box helicase domain protein; ATP-dependent helicase HrpA 1731145 4278451 Sfri_1447 Shewanella frigidimarina NCIMB 400 ATP-dependent helicase HrpA YP_750137.1 1727270 D 318167 CDS YP_750138.1 114562625 4278452 complement(1732166..1732618) 1 NC_008345.1 KEGG: son:SO2917 hypothetical protein; hypothetical protein 1732618 4278452 Sfri_1448 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750138.1 1732166 R 318167 CDS YP_750139.1 114562626 4278453 complement(1733168..1733947) 1 NC_008345.1 KEGG: son:SO2650 hypothetical protein; hypothetical protein 1733947 4278453 Sfri_1449 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750139.1 1733168 R 318167 CDS YP_750140.1 114562627 4278454 1734337..1735314 1 NC_008345.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1735314 cysB 4278454 cysB Shewanella frigidimarina NCIMB 400 transcriptional regulator CysB YP_750140.1 1734337 D 318167 CDS YP_750141.1 114562628 4278455 complement(1735401..1736045) 1 NC_008345.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 1736045 purN 4278455 purN Shewanella frigidimarina NCIMB 400 phosphoribosylglycinamide formyltransferase YP_750141.1 1735401 R 318167 CDS YP_750142.1 114562629 4278456 complement(1736045..1737082) 1 NC_008345.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1737082 4278456 Sfri_1452 Shewanella frigidimarina NCIMB 400 phosphoribosylaminoimidazole synthetase YP_750142.1 1736045 R 318167 CDS YP_750143.1 114562630 4278457 1737324..1737950 1 NC_008345.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1737950 upp 4278457 upp Shewanella frigidimarina NCIMB 400 uracil phosphoribosyltransferase YP_750143.1 1737324 D 318167 CDS YP_750144.1 114562631 4278458 complement(1738083..1739411) 1 NC_008345.1 PFAM: Gluconate transporter; Citrate transporter; Na+/H+ antiporter NhaC; KEGG: son:SO2757 membrane protein, putative; Na+/H+ antiporter NhaC 1739411 4278458 Sfri_1454 Shewanella frigidimarina NCIMB 400 Na+/H+ antiporter NhaC YP_750144.1 1738083 R 318167 CDS YP_750145.1 114562632 4278459 1739795..1740400 1 NC_008345.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cps:CPS_3474 antioxidant, AhpC/Tsa family; alkyl hydroperoxide reductase 1740400 4278459 Sfri_1455 Shewanella frigidimarina NCIMB 400 alkyl hydroperoxide reductase YP_750145.1 1739795 D 318167 CDS YP_750146.1 114562633 4278460 complement(1740527..1741192) 1 NC_008345.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1741192 4278460 Sfri_1456 Shewanella frigidimarina NCIMB 400 ribonuclease T YP_750146.1 1740527 R 318167 CDS YP_750147.1 114562634 4278461 1741380..1742249 1 NC_008345.1 PFAM: OmpA/MotB domain protein; KEGG: cps:CPS_3471 sodium-type flagellar protein MotY; OmpA/MotB domain-containing protein 1742249 4278461 Sfri_1457 Shewanella frigidimarina NCIMB 400 OmpA/MotB domain-containing protein YP_750147.1 1741380 D 318167 CDS YP_750148.1 114562635 4278462 1743571..1743969 1 NC_008345.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: son:SO2752 conserved hypothetical protein TIGR00051; 4-hydroxybenzoyl-CoA thioesterase 1743969 4278462 Sfri_1458 Shewanella frigidimarina NCIMB 400 4-hydroxybenzoyl-CoA thioesterase YP_750148.1 1743571 D 318167 CDS YP_750149.1 114562636 4278463 1743959..1744648 1 NC_008345.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO2751 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 1744648 4278463 Sfri_1459 Shewanella frigidimarina NCIMB 400 MotA/TolQ/ExbB proton channel YP_750149.1 1743959 D 318167 CDS YP_750150.1 114562637 4278464 1744648..1745076 1 NC_008345.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO2750 tolr protein; biopolymer transport protein ExbD/TolR 1745076 4278464 Sfri_1460 Shewanella frigidimarina NCIMB 400 biopolymer transport protein ExbD/TolR YP_750150.1 1744648 D 318167 CDS YP_750151.1 114562638 4278465 1745077..1746039 1 NC_008345.1 PFAM: TolA family protein; KEGG: son:SO2749 tolA protein; TolA family protein 1746039 4278465 Sfri_1461 Shewanella frigidimarina NCIMB 400 TolA family protein YP_750151.1 1745077 D 318167 CDS YP_750152.1 114562639 4278466 1746083..1747411 1 NC_008345.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1747411 tolB 4278466 tolB Shewanella frigidimarina NCIMB 400 translocation protein TolB YP_750152.1 1746083 D 318167 CDS YP_750153.1 114562640 4278467 1747435..1747971 1 NC_008345.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO2747 peptidoglycan-associated lipoprotein; OmpA/MotB domain-containing protein 1747971 4278467 Sfri_1463 Shewanella frigidimarina NCIMB 400 OmpA/MotB domain-containing protein YP_750153.1 1747435 D 318167 CDS YP_750154.1 114562641 4277560 1748027..1748764 1 NC_008345.1 KEGG: son:SO2746 hypothetical protein; hypothetical protein 1748764 4277560 Sfri_1464 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750154.1 1748027 D 318167 CDS YP_750155.1 114562642 4277561 1750733..1751884 1 NC_008345.1 KEGG: pha:PSHAa0696 hypothetical protein; hypothetical protein 1751884 4277561 Sfri_1465 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750155.1 1750733 D 318167 CDS YP_750156.1 114562643 4277562 complement(1751949..1752209) 1 NC_008345.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 1752209 grxA 4277562 grxA Shewanella frigidimarina NCIMB 400 glutaredoxin YP_750156.1 1751949 R 318167 CDS YP_750157.1 114562644 4277563 complement(1752289..1754040) 1 NC_008345.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO2744 helicase; type III restriction enzyme, res subunit 1754040 4277563 Sfri_1467 Shewanella frigidimarina NCIMB 400 type III restriction enzyme, res subunit YP_750157.1 1752289 R 318167 CDS YP_750158.1 114562645 4277564 1754284..1754685 1 NC_008345.1 KEGG: cps:CPS_2494 hypothetical protein; hypothetical protein 1754685 4277564 Sfri_1468 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750158.1 1754284 D 318167 CDS YP_750159.1 114562646 4277565 complement(1754799..1756751) 1 NC_008345.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 1756751 4277565 Sfri_1469 Shewanella frigidimarina NCIMB 400 acetyl-CoA synthetase YP_750159.1 1754799 R 318167 CDS YP_750160.1 114562647 4277566 1757008..1760430 1 NC_008345.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2742 sensor histidine kinase/response regulator; periplasmic sensor hybrid histidine kinase 1760430 4277566 Sfri_1470 Shewanella frigidimarina NCIMB 400 periplasmic sensor hybrid histidine kinase YP_750160.1 1757008 D 318167 CDS YP_750161.1 114562648 4277567 1760460..1761062 1 NC_008345.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: pae:PA1655 probable glutathione S-transferase; glutathione S-transferase domain-containing protein 1761062 4277567 Sfri_1471 Shewanella frigidimarina NCIMB 400 glutathione S-transferase domain-containing protein YP_750161.1 1760460 D 318167 CDS YP_750162.1 114562649 4277568 complement(1761134..1761766) 1 NC_008345.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ppr:PBPRA3127 putative lysine efflux permease; lysine exporter protein LysE/YggA 1761766 4277568 Sfri_1472 Shewanella frigidimarina NCIMB 400 lysine exporter protein LysE/YggA YP_750162.1 1761134 R 318167 CDS YP_750163.1 114562650 4277569 1761925..1762818 1 NC_008345.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 1762818 4277569 Sfri_1473 Shewanella frigidimarina NCIMB 400 chromosome replication initiation inhibitor protein YP_750163.1 1761925 D 318167 CDS YP_750164.1 114562651 4277570 complement(1762894..1764228) 1 NC_008345.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: son:SO2741 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1764228 4277570 Sfri_1474 Shewanella frigidimarina NCIMB 400 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_750164.1 1762894 R 318167 CDS YP_750165.1 114562652 4277571 1764343..1765395 1 NC_008345.1 KEGG: son:SO2740 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 1765395 4277571 Sfri_1475 Shewanella frigidimarina NCIMB 400 biotin synthase YP_750165.1 1764343 D 318167 CDS YP_750166.1 114562653 4277572 1765402..1766601 1 NC_008345.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aminotransferase, class I and II; aminotransferase class-III; KEGG: son:SO2739 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 1766601 4277572 Sfri_1476 Shewanella frigidimarina NCIMB 400 8-amino-7-oxononanoate synthase YP_750166.1 1765402 D 318167 CDS YP_750167.1 114562654 4277573 1766622..1767386 1 NC_008345.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2738 biotin synthesis protein BioC; methyltransferase type 11 1767386 4277573 Sfri_1477 Shewanella frigidimarina NCIMB 400 methyltransferase type 11 YP_750167.1 1766622 D 318167 CDS YP_750168.1 114562655 4277574 1767391..1768101 1 NC_008345.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 1768101 bioD 4277574 bioD Shewanella frigidimarina NCIMB 400 dithiobiotin synthetase YP_750168.1 1767391 D 318167 CDS YP_750169.1 114562656 4277575 complement(1768204..1769229) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2197 GGDEF family protein; diguanylate cyclase 1769229 4277575 Sfri_1479 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_750169.1 1768204 R 318167 CDS YP_750170.1 114562657 4277576 complement(1769383..1770294) 1 NC_008345.1 KEGG: son:SO2199 hypothetical protein; hypothetical protein 1770294 4277576 Sfri_1480 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750170.1 1769383 R 318167 CDS YP_750171.1 114562658 4277577 complement(1770741..1771169) 1 NC_008345.1 PFAM: protein of unknown function DUF413; KEGG: son:SO2201 hypothetical protein; hypothetical protein 1771169 4277577 Sfri_1481 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750171.1 1770741 R 318167 CDS YP_750172.1 114562659 4278049 1771278..1772132 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2202 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 1772132 4278049 Sfri_1482 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_750172.1 1771278 D 318167 CDS YP_750173.1 114562660 4278050 complement(1772150..1772521) 1 NC_008345.1 PFAM: diacylglycerol kinase; KEGG: son:SO2203 diacylglycerol kinase; diacylglycerol kinase 1772521 4278050 Sfri_1483 Shewanella frigidimarina NCIMB 400 diacylglycerol kinase YP_750173.1 1772150 R 318167 CDS YP_750174.1 114562661 4278051 1772930..1773778 1 NC_008345.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 1773778 4278051 Sfri_1484 Shewanella frigidimarina NCIMB 400 DNA ligase YP_750174.1 1772930 D 318167 CDS YP_750175.1 114562662 4278052 1773935..1774420 1 NC_008345.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: son:SO2208 phosphotyrosine protein phosphatase; protein tyrosine phosphatase 1774420 4278052 Sfri_1485 Shewanella frigidimarina NCIMB 400 protein tyrosine phosphatase YP_750175.1 1773935 D 318167 CDS YP_750176.1 114562663 4278053 complement(1774572..1775513) 1 NC_008345.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1775513 rbgA 4278053 rbgA Shewanella frigidimarina NCIMB 400 ribosomal biogenesis GTPase YP_750176.1 1774572 R 318167 CDS YP_750177.1 114562664 4278054 complement(1775644..1776483) 1 NC_008345.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: son:SO2589 isopenicillin-N synthase; 2OG-Fe(II) oxygenase 1776483 4278054 Sfri_1487 Shewanella frigidimarina NCIMB 400 2OG-Fe(II) oxygenase YP_750177.1 1775644 R 318167 CDS YP_750178.1 114562665 4278055 1776646..1777563 1 NC_008345.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 1777563 4278055 Sfri_1488 Shewanella frigidimarina NCIMB 400 bifunctional methionine sulfoxide reductase B/A protein YP_750178.1 1776646 D 318167 CDS YP_750179.1 114562666 4278056 complement(1778819..1782193) 1 NC_008345.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: son:SO2785 ribonuclease E; ribonuclease, Rne/Rng family protein 1782193 4278056 Sfri_1490 Shewanella frigidimarina NCIMB 400 ribonuclease, Rne/Rng family protein YP_750179.1 1778819 R 318167 CDS YP_750180.1 114562667 4278057 1782820..1783776 1 NC_008345.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sfx:S1170 pseudouridylate synthase; RluA family pseudouridine synthase 1783776 4278057 Sfri_1491 Shewanella frigidimarina NCIMB 400 RluA family pseudouridine synthase YP_750180.1 1782820 D 318167 CDS YP_750181.1 114562668 4278058 1783808..1784461 1 NC_008345.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pha:PSHAa1814 phosphoglycolate phosphatase, contains a phosphatase-like domain; HAD family hydrolase 1784461 4278058 Sfri_1492 Shewanella frigidimarina NCIMB 400 HAD family hydrolase YP_750181.1 1783808 D 318167 CDS YP_750182.1 114562669 4278059 complement(1784646..1785266) 1 NC_008345.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: vvy:VV1269 Maf-like protein; maf protein 1785266 4278059 Sfri_1493 Shewanella frigidimarina NCIMB 400 maf protein YP_750182.1 1784646 R 318167 CDS YP_750183.1 114562670 4278060 1785514..1786038 1 NC_008345.1 PFAM: protein of unknown function DUF177; KEGG: son:SO2781 hypothetical protein; hypothetical protein 1786038 4278060 Sfri_1494 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750183.1 1785514 D 318167 CDS YP_750184.1 114562671 4278061 1786057..1786227 1 NC_008345.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1786227 rpmF 4278061 rpmF Shewanella frigidimarina NCIMB 400 50S ribosomal protein L32 YP_750184.1 1786057 D 318167 CDS YP_750185.1 114562672 4278062 1786243..1787271 1 NC_008345.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1787271 4278062 Sfri_1496 Shewanella frigidimarina NCIMB 400 putative glycerol-3-phosphate acyltransferase PlsX YP_750185.1 1786243 D 318167 CDS YP_750186.1 114562673 4278063 1787280..1788239 1 NC_008345.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1788239 4278063 Sfri_1497 Shewanella frigidimarina NCIMB 400 3-oxoacyl-ACP synthase YP_750186.1 1787280 D 318167 CDS YP_750187.1 114562674 4278064 1788272..1789198 1 NC_008345.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: son:SO2777 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 1789198 4278064 Sfri_1498 Shewanella frigidimarina NCIMB 400 malonyl CoA-acyl carrier protein transacylase YP_750187.1 1788272 D 318167 CDS YP_750188.1 114562675 4278065 1789209..1789955 1 NC_008345.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO2776 3-oxoacyl-[acyl-carrier protein] reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 1789955 4278065 Sfri_1499 Shewanella frigidimarina NCIMB 400 3-oxoacyl-(acyl-carrier-protein) reductase YP_750188.1 1789209 D 318167 CDS YP_750189.1 114562676 4277455 1790119..1790352 1 NC_008345.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1790352 acpP 4277455 acpP Shewanella frigidimarina NCIMB 400 acyl carrier protein YP_750189.1 1790119 D 318167 CDS YP_750190.1 114562677 4277456 1790515..1791753 1 NC_008345.1 PFAM: beta-ketoacyl synthase; KEGG: son:SO2774 3-oxoacyl-(acyl-carrier-protein) synthase II; beta-ketoacyl synthase 1791753 4277456 Sfri_1501 Shewanella frigidimarina NCIMB 400 beta-ketoacyl synthase YP_750190.1 1790515 D 318167 CDS YP_750191.1 114562678 4277457 1791894..1792382 1 NC_008345.1 PFAM: thioesterase superfamily protein; KEGG: son:SO2772 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 1792382 4277457 Sfri_1502 Shewanella frigidimarina NCIMB 400 thioesterase superfamily protein YP_750191.1 1791894 D 318167 CDS YP_750192.1 114562679 4277458 1792396..1793271 1 NC_008345.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: son:SO2771 2-hydroxy-3-oxopropionate reductase; 2-hydroxy-3-oxopropionate reductase 1793271 4277458 Sfri_1503 Shewanella frigidimarina NCIMB 400 2-hydroxy-3-oxopropionate reductase YP_750192.1 1792396 D 318167 CDS YP_750193.1 114562680 4277459 1793665..1794000 1 NC_008345.1 KEGG: son:SO2727 cytochrome c3; cytochrome c3 1794000 4277459 Sfri_1504 Shewanella frigidimarina NCIMB 400 cytochrome c3 YP_750193.1 1793665 D 318167 CDS YP_750194.1 114562681 4277460 1794291..1797107 1 NC_008345.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: vpa:VPA1065 putative nitrate reductase, large subunit protein; molybdopterin oxidoreductase 1797107 4277460 Sfri_1505 Shewanella frigidimarina NCIMB 400 molybdopterin oxidoreductase YP_750194.1 1794291 D 318167 CDS YP_750195.1 114562682 4277461 1797107..1797991 1 NC_008345.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: vvy:VVA0956 uroporphyrinogen-III methylase; uroporphyrin-III C-methyltransferase 1797991 4277461 Sfri_1506 Shewanella frigidimarina NCIMB 400 uroporphyrin-III C-methyltransferase YP_750195.1 1797107 D 318167 CDS YP_750196.1 114562683 4277462 1797984..1799162 1 NC_008345.1 PFAM: glycosyl transferase, family 3; KEGG: ppr:PBPRB0206 hypothetical protein; glycosyl transferase family protein 1799162 4277462 Sfri_1507 Shewanella frigidimarina NCIMB 400 glycosyl transferase family protein YP_750196.1 1797984 D 318167 CDS YP_750197.1 114562684 4277463 1799150..1799827 1 NC_008345.1 PFAM: ANTAR domain protein; KEGG: tcx:Tcr_1151 response regulator receiver (CheY-like) and ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 1799827 4277463 Sfri_1508 Shewanella frigidimarina NCIMB 400 response regulator receiver/ANTAR domain-containing protein YP_750197.1 1799150 D 318167 CDS YP_750198.1 114562685 4277464 1800064..1802667 1 NC_008345.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: vvu:VV20390 NAD(P)H-nitrite reductase; nitrite reductase (NAD(P)H) large subunit 1802667 4277464 Sfri_1509 Shewanella frigidimarina NCIMB 400 nitrite reductase (NAD(P)H) large subunit YP_750198.1 1800064 D 318167 CDS YP_750199.1 114562686 4277465 1802664..1802990 1 NC_008345.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: ppr:PBPRA1427 putative nitrite reductase (NAD(P)H) smallsubunit; nitrite reductase (NAD(P)H) small subunit 1802990 4277465 Sfri_1510 Shewanella frigidimarina NCIMB 400 nitrite reductase (NAD(P)H) small subunit YP_750199.1 1802664 D 318167 CDS YP_750200.1 114562687 4277466 1803001..1804467 1 NC_008345.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_4950 nitrate permease; nitrite transporter 1804467 4277466 Sfri_1511 Shewanella frigidimarina NCIMB 400 nitrite transporter YP_750200.1 1803001 D 318167 CDS YP_750201.1 114562688 4277467 1804524..1806314 1 NC_008345.1 PFAM: protein kinase; SMART: tyrosine protein kinase; protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: hch:HCH_05817 serine/threonine protein kinase; serine/threonine protein kinase 1806314 4277467 Sfri_1512 Shewanella frigidimarina NCIMB 400 serine/threonine protein kinase YP_750201.1 1804524 D 318167 CDS YP_750202.1 114562689 4277468 1806827..1807360 1 NC_008345.1 PFAM: Curlin associated repeat protein; KEGG: bur:Bcep18194_B2589 hypothetical protein; curlin-associated protein 1807360 4277468 Sfri_1513 Shewanella frigidimarina NCIMB 400 curlin-associated protein YP_750202.1 1806827 D 318167 CDS YP_750203.1 114562690 4277469 1807402..1808955 1 NC_008345.1 PFAM: Curlin associated repeat protein; KEGG: son:SO0865 hypothetical protein; curlin-associated protein 1808955 4277469 Sfri_1514 Shewanella frigidimarina NCIMB 400 curlin-associated protein YP_750203.1 1807402 D 318167 CDS YP_750204.1 114562691 4277470 1809670..1810206 1 NC_008345.1 PFAM: Curlin associated repeat protein; KEGG: ppu:PP3398 curli fiber surface-exposed nucleator CsgB, putative; curlin-associated protein 1810206 4277470 Sfri_1515 Shewanella frigidimarina NCIMB 400 curlin-associated protein YP_750204.1 1809670 D 318167 CDS YP_750205.1 114562692 4277471 1810227..1811885 1 NC_008345.1 PFAM: Curlin associated repeat protein; KEGG: pfo:Pfl_1996 curlin associated; curlin-associated protein 1811885 4277471 Sfri_1516 Shewanella frigidimarina NCIMB 400 curlin-associated protein YP_750205.1 1810227 D 318167 CDS YP_750206.1 114562693 4277472 1812039..1812671 1 NC_008345.1 PFAM: regulatory protein, LuxR; KEGG: son:SO2725 transcriptional regulator, LuxR family; transcriptional regulator, LuxR family protein 1812671 4277472 Sfri_1517 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LuxR family protein YP_750206.1 1812039 D 318167 CDS YP_750207.1 114562694 4277473 1812701..1813246 1 NC_008345.1 KEGG: vfi:VF2407 CsgE-like protein; hypothetical protein 1813246 4277473 Sfri_1518 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750207.1 1812701 D 318167 CDS YP_750208.1 114562695 4277474 1813259..1813660 1 NC_008345.1 KEGG: vfi:VF2406 curli production assembly/transport component CsgF precursor; curli production assembly/transport component CsgF precursor 1813660 4277474 Sfri_1519 Shewanella frigidimarina NCIMB 400 curli production assembly/transport component CsgF precursor YP_750208.1 1813259 D 318167 CDS YP_750209.1 114562696 4277475 1813663..1814514 1 NC_008345.1 PFAM: Curli production assembly/transport component CsgG; KEGG: vfi:VF2405 curli production assembly/transport component CsgG precursor; curli production assembly/transport component CsgG 1814514 4277475 Sfri_1520 Shewanella frigidimarina NCIMB 400 curli production assembly/transport component CsgG YP_750209.1 1813663 D 318167 CDS YP_750210.1 114562697 4277476 complement(1814669..1816426) 1 NC_008345.1 PFAM: peptidase M61 domain protein; KEGG: son:SO2724 protease, putative; peptidase M61 domain-containing protein 1816426 4277476 Sfri_1521 Shewanella frigidimarina NCIMB 400 peptidase M61 domain-containing protein YP_750210.1 1814669 R 318167 CDS YP_750211.1 114562698 4277477 1816630..1816983 1 NC_008345.1 PFAM: histidine triad (HIT) protein; KEGG: son:SO2723 HIT family protein; histidine triad (HIT) protein 1816983 4277477 Sfri_1522 Shewanella frigidimarina NCIMB 400 histidine triad (HIT) protein YP_750211.1 1816630 D 318167 CDS YP_750212.1 114562699 4277478 1816983..1817492 1 NC_008345.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO2722 hypothetical protein; hypothetical protein 1817492 4277478 Sfri_1523 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750212.1 1816983 D 318167 CDS YP_750213.1 114562700 4277479 1817489..1817956 1 NC_008345.1 PFAM: thioesterase superfamily protein; KEGG: son:SO2721 hypothetical protein; thioesterase superfamily protein 1817956 4277479 Sfri_1524 Shewanella frigidimarina NCIMB 400 thioesterase superfamily protein YP_750213.1 1817489 D 318167 CDS YP_750214.1 114562701 4277480 1817994..1818386 1 NC_008345.1 PFAM: protein of unknown function DUF1425; KEGG: son:SO2720 hypothetical protein; hypothetical protein 1818386 4277480 Sfri_1525 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750214.1 1817994 D 318167 CDS YP_750215.1 114562702 4277481 1818677..1820878 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2715 TonB-dependent receptor; TonB-dependent receptor 1820878 4277481 Sfri_1526 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor YP_750215.1 1818677 D 318167 CDS YP_750216.1 114562703 4277482 1820933..1821193 1 NC_008345.1 KEGG: son:SO2714 hypothetical protein; hypothetical protein 1821193 4277482 Sfri_1527 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750216.1 1820933 D 318167 CDS YP_750217.1 114562704 4277483 1821199..1821909 1 NC_008345.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: son:SO2713 transporter, putative; nicotinamide mononucleotide transporter PnuC 1821909 4277483 Sfri_1528 Shewanella frigidimarina NCIMB 400 nicotinamide mononucleotide transporter PnuC YP_750217.1 1821199 D 318167 CDS YP_750218.1 114562705 4277484 1821946..1822944 1 NC_008345.1 KEGG: son:SO2712 hypothetical protein; hypothetical protein 1822944 4277484 Sfri_1529 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750218.1 1821946 D 318167 CDS YP_750219.1 114562706 4277485 1823004..1823849 1 NC_008345.1 KEGG: son:SO2711 hypothetical protein; hypothetical protein 1823849 4277485 Sfri_1530 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750219.1 1823004 D 318167 CDS YP_750220.1 114562707 4277486 1823942..1824535 1 NC_008345.1 PFAM: DoxX family protein; KEGG: son:SO2710 hypothetical protein; DoxX family protein 1824535 4277486 Sfri_1531 Shewanella frigidimarina NCIMB 400 DoxX family protein YP_750220.1 1823942 D 318167 CDS YP_750221.1 114562708 4277487 1824694..1825242 1 NC_008345.1 PFAM: nitroreductase; KEGG: son:SO2708 nitroreductase family protein; nitroreductase 1825242 4277487 Sfri_1532 Shewanella frigidimarina NCIMB 400 nitroreductase YP_750221.1 1824694 D 318167 CDS YP_750222.1 114562709 4277488 complement(1825323..1825523) 1 NC_008345.1 KEGG: sdn:Sden_2314 hypothetical protein; hypothetical protein 1825523 4277488 Sfri_1533 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750222.1 1825323 R 318167 CDS YP_750223.1 114562710 4277489 complement(1825700..1826416) 1 NC_008345.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain protein; KEGG: ppr:PBPRB1270 hypothetical protein; glutathione S-transferase domain-containing protein 1826416 4277489 Sfri_1534 Shewanella frigidimarina NCIMB 400 glutathione S-transferase domain-containing protein YP_750223.1 1825700 R 318167 CDS YP_750224.1 114562711 4277771 1826654..1827706 1 NC_008345.1 PFAM: Rhodanese domain protein; KEGG: son:SO2290 rhodanese domain protein; hypothetical protein 1827706 4277771 Sfri_1535 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750224.1 1826654 D 318167 CDS YP_750225.1 114562712 4277772 complement(1827974..1828810) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ade:Adeh_3473 diguanylate cyclase (GGDEF domain); diguanylate cyclase 1828810 4277772 Sfri_1536 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_750225.1 1827974 R 318167 CDS YP_750226.1 114562713 4277773 1829377..1829976 1 NC_008345.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1829976 recR 4277773 recR Shewanella frigidimarina NCIMB 400 recombination protein RecR YP_750226.1 1829377 D 318167 CDS YP_750227.1 114562714 4277774 1830256..1832169 1 NC_008345.1 molecular chaperone; heat shock protein 90 1832169 4277774 Sfri_1538 Shewanella frigidimarina NCIMB 400 heat shock protein 90 YP_750227.1 1830256 D 318167 CDS YP_750228.1 114562715 4277775 1832236..1833099 1 NC_008345.1 PFAM: Thioredoxin domain; KEGG: son:SO2017 putative thioredoxin-like protein; thioredoxin domain-containing protein 1833099 4277775 Sfri_1539 Shewanella frigidimarina NCIMB 400 thioredoxin domain-containing protein YP_750228.1 1832236 D 318167 CDS YP_750229.1 114562716 4277776 1833236..1833880 1 NC_008345.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1833880 adk 4277776 adk Shewanella frigidimarina NCIMB 400 adenylate kinase YP_750229.1 1833236 D 318167 CDS YP_750230.1 114562717 4277777 1834479..1835783 1 NC_008345.1 PFAM: PfkB domain protein; KEGG: son:SO2020 inosine-guanosine kinase; inosine kinase 1835783 4277777 Sfri_1541 Shewanella frigidimarina NCIMB 400 inosine kinase YP_750230.1 1834479 D 318167 CDS YP_750231.1 114562718 4277778 1835899..1836729 1 NC_008345.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1836729 nadE 4277778 nadE Shewanella frigidimarina NCIMB 400 NAD synthetase YP_750231.1 1835899 D 318167 CDS YP_750232.1 114562719 4277779 complement(1836734..1837264) 1 NC_008345.1 KEGG: son:SO2022 hypothetical protein; hypothetical protein 1837264 4277779 Sfri_1543 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750232.1 1836734 R 318167 CDS YP_750233.1 114562720 4277780 1837400..1838899 1 NC_008345.1 KEGG: son:SO2024 hypothetical protein; lysophospholipase-like protein 1838899 4277780 Sfri_1544 Shewanella frigidimarina NCIMB 400 lysophospholipase-like protein YP_750233.1 1837400 D 318167 CDS YP_750234.1 114562721 4277781 complement(1838889..1840994) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cps:CPS_4941 sensory box/GGDEF domain protein; diguanylate cyclase 1840994 4277781 Sfri_1545 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_750234.1 1838889 R 318167 CDS YP_750235.1 114562722 4277782 1841418..1841684 1 NC_008345.1 KEGG: son:SO2858 hypothetical protein; hypothetical protein 1841684 4277782 Sfri_1546 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750235.1 1841418 D 318167 CDS YP_750236.1 114562723 4277783 1841697..1843415 1 NC_008345.1 PFAM: Na+/solute symporter; KEGG: son:SO2857 sodium/solute symporter family protein; Na+/solute symporter 1843415 4277783 Sfri_1547 Shewanella frigidimarina NCIMB 400 Na+/solute symporter YP_750236.1 1841697 D 318167 CDS YP_750237.1 114562724 4277784 1843547..1845394 1 NC_008345.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: son:SO2856 CBS domain protein; cyclic nucleotide-binding protein 1845394 4277784 Sfri_1548 Shewanella frigidimarina NCIMB 400 cyclic nucleotide-binding protein YP_750237.1 1843547 D 318167 CDS YP_750238.1 114562725 4277785 1845394..1846083 1 NC_008345.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: son:SO2855 exonuclease; exonuclease, RNase T and DNA polymerase III 1846083 4277785 Sfri_1549 Shewanella frigidimarina NCIMB 400 exonuclease, RNase T and DNA polymerase III YP_750238.1 1845394 D 318167 CDS YP_750239.1 114562726 4277786 complement(1846137..1847219) 1 NC_008345.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase 1847219 4277786 Sfri_1550 Shewanella frigidimarina NCIMB 400 3-oxoacyl-ACP synthase YP_750239.1 1846137 R 318167 CDS YP_750240.1 114562727 4277787 complement(1847339..1848013) 1 NC_008345.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: son:SO2852 transcriptional regulator, GntR family; transcriptional regulator, GntR family protein 1848013 4277787 Sfri_1551 Shewanella frigidimarina NCIMB 400 transcriptional regulator, GntR family protein YP_750240.1 1847339 R 318167 CDS YP_750241.1 114562728 4277788 1848215..1848775 1 NC_008345.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 1848775 4277788 Sfri_1552 Shewanella frigidimarina NCIMB 400 D,D-heptose 1,7-bisphosphate phosphatase YP_750241.1 1848215 D 318167 CDS YP_750242.1 114562729 4277789 1855436..1855819 1 NC_008345.1 KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA 1855819 4277789 Sfri_1553 Shewanella frigidimarina NCIMB 400 ISSod10, transposase OrfA YP_750242.1 1855436 D 318167 CDS YP_750243.1 114562730 4277790 1855982..1857541 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: pha:PSHAa0416 transposase; integrase catalytic subunit 1857541 4277790 Sfri_1554 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_750243.1 1855982 D 318167 CDS YP_750244.1 114562731 4277791 1857570..1858328 1 NC_008345.1 PFAM: IstB domain protein ATP-binding protein; KEGG: pha:PSHAa0414 transposase; IstB ATP binding domain-containing protein 1858328 4277791 Sfri_1555 Shewanella frigidimarina NCIMB 400 IstB ATP binding domain-containing protein YP_750244.1 1857570 D 318167 CDS YP_750245.1 114562732 4277792 1858379..1858555 1 NC_008345.1 KEGG: son:SO4533 ISSod10, transposase OrfA; hypothetical protein 1858555 4277792 Sfri_1556 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750245.1 1858379 D 318167 CDS YP_750246.1 114562733 4277793 1858569..1859102 1 NC_008345.1 KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB 1859102 4277793 Sfri_1557 Shewanella frigidimarina NCIMB 400 ISSod10, transposase OrfB YP_750246.1 1858569 D 318167 CDS YP_750247.1 114562734 4277794 1859202..1859681 1 NC_008345.1 KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA 1859681 4277794 Sfri_1558 Shewanella frigidimarina NCIMB 400 ISSod10, transposase OrfA YP_750247.1 1859202 D 318167 CDS YP_750248.1 114562735 4277795 1859695..1860228 1 NC_008345.1 KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB 1860228 4277795 Sfri_1559 Shewanella frigidimarina NCIMB 400 ISSod10, transposase OrfB YP_750248.1 1859695 D 318167 CDS YP_750249.1 114562736 4277796 1861166..1862191 1 NC_008345.1 PFAM: secretion protein HlyD family protein; KEGG: hch:HCH_01961 membrane-fusion protein; secretion protein HlyD family protein 1862191 4277796 Sfri_1560 Shewanella frigidimarina NCIMB 400 secretion protein HlyD family protein YP_750249.1 1861166 D 318167 CDS YP_750250.1 114562737 4277797 1862207..1864963 1 NC_008345.1 PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: dar:Daro_0987 ABC-2:ABC transporter related; ABC transporter 1864963 4277797 Sfri_1561 Shewanella frigidimarina NCIMB 400 ABC transporter YP_750250.1 1862207 D 318167 CDS YP_750251.1 114562738 4277798 1864967..1866091 1 NC_008345.1 PFAM: ABC-2 type transporter; KEGG: sec:SC3514 putative ABC superfamily (atp_bind/membrane) transport protein; ABC-2 type transporter 1866091 4277798 Sfri_1562 Shewanella frigidimarina NCIMB 400 ABC-2 type transporter YP_750251.1 1864967 D 318167 CDS YP_750252.1 114562739 4277799 complement(1866181..1866411) 1 NC_008345.1 KEGG: son:SO4012 hypothetical protein; hypothetical protein 1866411 4277799 Sfri_1563 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750252.1 1866181 R 318167 CDS YP_750253.1 114562740 4277800 1866785..1867231 1 NC_008345.1 PFAM: heat shock protein Hsp20; KEGG: son:SO2277 16 kDa heat shock protein A; heat shock protein Hsp20 1867231 4277800 Sfri_1564 Shewanella frigidimarina NCIMB 400 heat shock protein Hsp20 YP_750253.1 1866785 D 318167 CDS YP_750254.1 114562741 4277801 complement(1867375..1867815) 1 NC_008345.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein, MerR; KEGG: vpa:VPA0335 SoxR protein; transcriptional regulator, MerR family protein 1867815 4277801 Sfri_1565 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MerR family protein YP_750254.1 1867375 R 318167 CDS YP_750255.1 114562742 4277802 1867917..1868339 1 NC_008345.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO3586 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 1868339 4277802 Sfri_1566 Shewanella frigidimarina NCIMB 400 glyoxalase/bleomycin resistance protein/dioxygenase YP_750255.1 1867917 D 318167 CDS YP_750256.1 114562743 4277803 complement(1868438..1869145) 1 NC_008345.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 1869145 4277803 Sfri_1567 Shewanella frigidimarina NCIMB 400 peptidase E YP_750256.1 1868438 R 318167 CDS YP_750257.1 114562744 4277804 1869414..1870277 1 NC_008345.1 putative metalloprotease; heat shock protein HtpX 1870277 4277804 Sfri_1568 Shewanella frigidimarina NCIMB 400 heat shock protein HtpX YP_750257.1 1869414 D 318167 CDS YP_750258.1 114562745 4277805 1870900..1873419 1 NC_008345.1 KEGG: son:SO3389 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1873419 4277805 Sfri_1569 Shewanella frigidimarina NCIMB 400 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_750258.1 1870900 D 318167 CDS YP_750259.1 114562746 4277962 complement(1873486..1873848) 1 NC_008345.1 KEGG: rso:RSc3095 putative serine-rich protein; hypothetical protein 1873848 4277962 Sfri_1570 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750259.1 1873486 R 318167 CDS YP_750260.1 114562747 4277963 complement(1873912..1874175) 1 NC_008345.1 hypothetical protein 1874175 4277963 Sfri_1571 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750260.1 1873912 R 318167 CDS YP_750261.1 114562748 4277964 1874303..1875808 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pca:Pcar_0361 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 1875808 4277964 Sfri_1572 Shewanella frigidimarina NCIMB 400 periplasmic sensor signal transduction histidine kinase YP_750261.1 1874303 D 318167 CDS YP_750262.1 114562749 4277965 1875811..1876515 1 NC_008345.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cps:CPS_3305 DNA-binding response regulator BaeR; two component transcriptional regulator, winged helix family protein 1876515 4277965 Sfri_1573 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, winged helix family protein YP_750262.1 1875811 D 318167 CDS YP_750263.1 114562750 4277966 1877264..1878136 1 NC_008345.1 KEGG: son:SO2179 hypothetical protein; hypothetical protein 1878136 4277966 Sfri_1574 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750263.1 1877264 D 318167 CDS YP_750264.1 114562751 4277967 1878179..1879087 1 NC_008345.1 PFAM: peptidase M23B; KEGG: son:SO2180 peptidase, M23/M37 family; peptidase M23B 1879087 4277967 Sfri_1575 Shewanella frigidimarina NCIMB 400 peptidase M23B YP_750264.1 1878179 D 318167 CDS YP_750265.1 114562752 4277968 1879316..1879720 1 NC_008345.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: vvu:VV21212 hypothetical protein; glutathione-dependent formaldehyde-activating protein 1879720 4277968 Sfri_1576 Shewanella frigidimarina NCIMB 400 glutathione-dependent formaldehyde-activating protein YP_750265.1 1879316 D 318167 CDS YP_750266.1 114562753 4277969 complement(1879897..1881516) 1 NC_008345.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ppr:PBPRA2314 putative FAD-dependent dehydrogenase; FAD dependent oxidoreductase 1881516 4277969 Sfri_1577 Shewanella frigidimarina NCIMB 400 FAD dependent oxidoreductase YP_750266.1 1879897 R 318167 CDS YP_750267.1 114562754 4277970 1881722..1882387 1 NC_008345.1 KEGG: gsu:GSU1169 hypothetical protein; hypothetical protein 1882387 4277970 Sfri_1578 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750267.1 1881722 D 318167 CDS YP_750268.1 114562755 4277971 complement(1882456..1883910) 1 NC_008345.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1883910 cls 4277971 cls Shewanella frigidimarina NCIMB 400 cardiolipin synthetase YP_750268.1 1882456 R 318167 CDS YP_750269.1 114562756 4277972 1884310..1885119 1 NC_008345.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ppr:PBPRA2923 hypothetical protein; endonuclease/exonuclease/phosphatase 1885119 4277972 Sfri_1580 Shewanella frigidimarina NCIMB 400 endonuclease/exonuclease/phosphatase YP_750269.1 1884310 D 318167 CDS YP_750270.1 114562757 4277973 complement(1885447..1885782) 1 NC_008345.1 KEGG: vfi:VF1779 tellurite resistance protein TehB; tellurite resistance protein TehB 1885782 4277973 Sfri_1581 Shewanella frigidimarina NCIMB 400 tellurite resistance protein TehB YP_750270.1 1885447 R 318167 CDS YP_750271.1 114562758 4277974 complement(1886043..1887188) 1 NC_008345.1 catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 1887188 4277974 Sfri_1582 Shewanella frigidimarina NCIMB 400 nitric oxide reductase YP_750271.1 1886043 R 318167 CDS YP_750272.1 114562759 4277975 complement(1887185..1888699) 1 NC_008345.1 detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 1888699 4277975 Sfri_1583 Shewanella frigidimarina NCIMB 400 anaerobic nitric oxide reductase flavorubredoxin YP_750272.1 1887185 R 318167 CDS YP_750273.1 114562760 4277976 complement(1889046..1889879) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: hch:HCH_04858 transcriptional regulator; transcriptional regulator, LysR family protein 1889879 4277976 Sfri_1584 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_750273.1 1889046 R 318167 CDS YP_750274.1 114562761 4277977 1889982..1891193 1 NC_008345.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: hch:HCH_04860 permease of the major facilitator superfamily; major facilitator transporter 1891193 4277977 Sfri_1585 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_750274.1 1889982 D 318167 CDS YP_750275.1 114562762 4277978 1891887..1892195 1 NC_008345.1 hypothetical protein 1892195 4277978 Sfri_1586 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750275.1 1891887 D 318167 CDS YP_750276.1 114562763 4277979 1892220..1892681 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vvu:VV20941 histone acetyltransferase HPA2; N-acetyltransferase GCN5 1892681 4277979 Sfri_1587 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_750276.1 1892220 D 318167 CDS YP_750277.1 114562764 4277980 complement(1892784..1893386) 1 NC_008345.1 PFAM: protein of unknown function DUF991; KEGG: son:SO2182 hypothetical protein; hypothetical protein 1893386 4277980 Sfri_1588 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750277.1 1892784 R 318167 CDS YP_750278.1 114562765 4277981 complement(1893438..1893941) 1 NC_008345.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: son:SO2183 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1893941 4277981 Sfri_1589 Shewanella frigidimarina NCIMB 400 ErfK/YbiS/YcfS/YnhG family protein YP_750278.1 1893438 R 318167 CDS YP_750279.1 114562766 4277982 1894108..1894938 1 NC_008345.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: sde:Sde_2579 hypothetical protein; Ion transport protein 1894938 4277982 Sfri_1590 Shewanella frigidimarina NCIMB 400 Ion transport protein YP_750279.1 1894108 D 318167 CDS YP_750280.1 114562767 4277983 1894999..1896564 1 NC_008345.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO1918 MATE efflux family protein; MATE efflux family protein 1896564 4277983 Sfri_1591 Shewanella frigidimarina NCIMB 400 MATE efflux family protein YP_750280.1 1894999 D 318167 CDS YP_750281.1 114562768 4277984 complement(1896768..1896965) 1 NC_008345.1 KEGG: son:SO1921 hypothetical protein; hypothetical protein 1896965 4277984 Sfri_1592 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750281.1 1896768 R 318167 CDS YP_750282.1 114562769 4277985 complement(1897182..1897628) 1 NC_008345.1 KEGG: son:SO2799 lipoprotein, putative; putative lipoprotein 1897628 4277985 Sfri_1593 Shewanella frigidimarina NCIMB 400 putative lipoprotein YP_750282.1 1897182 R 318167 CDS YP_750283.1 114562770 4277986 complement(1897794..1898150) 1 NC_008345.1 PFAM: glutaredoxin; KEGG: son:SO2797 hypothetical protein; glutaredoxin 1898150 4277986 Sfri_1594 Shewanella frigidimarina NCIMB 400 glutaredoxin YP_750283.1 1897794 R 318167 CDS YP_750284.1 114562771 4277987 complement(1898271..1901657) 1 NC_008345.1 PFAM: protein of unknown function DUF748; KEGG: son:SO2796 hypothetical protein; hypothetical protein 1901657 4277987 Sfri_1595 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750284.1 1898271 R 318167 CDS YP_750285.1 114562772 4277988 1901970..1902365 1 NC_008345.1 KEGG: aci:ACIAD2379 putative acetyltransferase; putative acetyltransferase 1902365 4277988 Sfri_1596 Shewanella frigidimarina NCIMB 400 putative acetyltransferase YP_750285.1 1901970 D 318167 CDS YP_750286.1 114562773 4277989 1902512..1903213 1 NC_008345.1 KEGG: son:SO2794 hypothetical protein; hypothetical protein 1903213 4277989 Sfri_1597 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750286.1 1902512 D 318167 CDS YP_750287.1 114562774 4277990 1903314..1903664 1 NC_008345.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2793 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 1903664 4277990 Sfri_1598 Shewanella frigidimarina NCIMB 400 glyoxalase/bleomycin resistance protein/dioxygenase YP_750287.1 1903314 D 318167 CDS YP_750288.1 114562775 4277991 1903645..1903842 1 NC_008345.1 PFAM: protein of unknown function DUF1289; KEGG: son:SO2792 hypothetical protein; hypothetical protein 1903842 4277991 Sfri_1599 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750288.1 1903645 D 318167 CDS YP_750289.1 114562776 4277992 complement(1903888..1904403) 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_2540 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1904403 4277992 Sfri_1600 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_750289.1 1903888 R 318167 CDS YP_750290.1 114562777 4277993 1904596..1905348 1 NC_008345.1 PFAM: Integral membrane protein TerC; KEGG: hch:HCH_06655 membrane protein TerC, possibly involved in tellurium resistance; integral membrane protein TerC 1905348 4277993 Sfri_1601 Shewanella frigidimarina NCIMB 400 integral membrane protein TerC YP_750290.1 1904596 D 318167 CDS YP_750291.1 114562778 4277994 complement(1905474..1907138) 1 NC_008345.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 1907138 asnB 4277994 asnB Shewanella frigidimarina NCIMB 400 asparagine synthetase B YP_750291.1 1905474 R 318167 CDS YP_750292.1 114562779 4277995 1907675..1908076 1 NC_008345.1 KEGG: cps:CPS_3135 hypothetical protein; hypothetical protein 1908076 4277995 Sfri_1603 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750292.1 1907675 D 318167 CDS YP_750293.1 114562780 4277996 complement(1908250..1909908) 1 NC_008345.1 PFAM: peptidase M28; KEGG: son:SO2766 hypothetical protein; peptidase M28 1909908 4277996 Sfri_1604 Shewanella frigidimarina NCIMB 400 peptidase M28 YP_750293.1 1908250 R 318167 CDS YP_750294.1 114562781 4277264 complement(1910067..1910813) 1 NC_008345.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO2762 nagD protein; UMP phosphatase 1910813 4277264 Sfri_1605 Shewanella frigidimarina NCIMB 400 UMP phosphatase YP_750294.1 1910067 R 318167 CDS YP_750295.1 114562782 4277265 1911452..1913128 1 NC_008345.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO2581 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 1913128 4277265 Sfri_1606 Shewanella frigidimarina NCIMB 400 AMP-dependent synthetase and ligase YP_750295.1 1911452 D 318167 CDS YP_750296.1 114562783 4277266 complement(1913559..1913933) 1 NC_008345.1 hypothetical protein 1913933 4277266 Sfri_1607 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750296.1 1913559 R 318167 CDS YP_750297.1 114562784 4277267 1914538..1915350 1 NC_008345.1 KEGG: vvy:VV1912 hypothetical protein; hypothetical protein 1915350 4277267 Sfri_1608 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750297.1 1914538 D 318167 CDS YP_750298.1 114562785 4277268 complement(1915896..1916708) 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 1916708 4277268 Sfri_1609 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_750298.1 1915896 R 318167 CDS YP_750299.1 114562786 4277269 complement(1916762..1917073) 1 NC_008345.1 PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 1917073 4277269 Sfri_1610 Shewanella frigidimarina NCIMB 400 transposase IS3/IS911 family protein YP_750299.1 1916762 R 318167 CDS YP_750300.1 114562787 4277270 complement(1917217..1918227) 1 NC_008345.1 KEGG: son:SO3714 sugar-binding protein, putative; sugar-binding protein, putative 1918227 4277270 Sfri_1611 Shewanella frigidimarina NCIMB 400 sugar-binding protein, putative YP_750300.1 1917217 R 318167 CDS YP_750301.1 114562788 4277271 complement(1918697..1919824) 1 NC_008345.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: pha:PSHAb0018 putative Zn-dependent enzyme; alcohol dehydrogenase 1919824 4277271 Sfri_1612 Shewanella frigidimarina NCIMB 400 alcohol dehydrogenase YP_750301.1 1918697 R 318167 CDS YP_750302.1 114562789 4277272 complement(1919959..1920636) 1 NC_008345.1 PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: pha:PSHAb0017 putative glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 1920636 4277272 Sfri_1613 Shewanella frigidimarina NCIMB 400 glutathione S-transferase domain-containing protein YP_750302.1 1919959 R 318167 CDS YP_750303.1 114562790 4277273 1920904..1921788 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pha:PSHAb0014 putative transcriptional regulatory protein (LysR family); transcriptional regulator, LysR family protein 1921788 4277273 Sfri_1614 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_750303.1 1920904 D 318167 CDS YP_750304.1 114562791 4277274 1922201..1923313 1 NC_008345.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 1923313 4277274 Sfri_1615 Shewanella frigidimarina NCIMB 400 agmatine deiminase YP_750304.1 1922201 D 318167 CDS YP_750305.1 114562792 4277275 1923393..1925102 1 NC_008345.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 1925102 4277275 Sfri_1616 Shewanella frigidimarina NCIMB 400 amidase YP_750305.1 1923393 D 318167 CDS YP_750306.1 114562793 4277276 1926194..1926652 1 NC_008345.1 hypothetical protein 1926652 4277276 Sfri_1617 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750306.1 1926194 D 318167 CDS YP_750307.1 114562794 4277277 1927036..1927896 1 NC_008345.1 KEGG: son:SO1154 hypothetical protein; hypothetical protein 1927896 4277277 Sfri_1618 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750307.1 1927036 D 318167 CDS YP_750308.1 114562795 4277278 complement(1927935..1928207) 1 NC_008345.1 hypothetical protein 1928207 4277278 Sfri_1619 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750308.1 1927935 R 318167 CDS YP_750309.1 114562796 4277279 complement(1928518..1928943) 1 NC_008345.1 hypothetical protein 1928943 4277279 Sfri_1620 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750309.1 1928518 R 318167 CDS YP_750310.1 114562797 4277280 complement(1929025..1930215) 1 NC_008345.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 1930215 4277280 Sfri_1621 Shewanella frigidimarina NCIMB 400 cystathionine beta-lyase YP_750310.1 1929025 R 318167 CDS YP_750311.1 114562798 4277281 complement(1930379..1932550) 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2192 sensor histidine kinase; sensor signal transduction histidine kinase 1932550 4277281 Sfri_1622 Shewanella frigidimarina NCIMB 400 sensor signal transduction histidine kinase YP_750311.1 1930379 R 318167 CDS YP_750312.1 114562799 4277282 complement(1932554..1933243) 1 NC_008345.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2193 DNA-binding response regulator; two component transcriptional regulator, winged helix family protein 1933243 4277282 Sfri_1623 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, winged helix family protein YP_750312.1 1932554 R 318167 CDS YP_750313.1 114562800 4277283 1933504..1934271 1 NC_008345.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO2194 OmpA family protein; OmpA/MotB domain-containing protein 1934271 4277283 Sfri_1624 Shewanella frigidimarina NCIMB 400 OmpA/MotB domain-containing protein YP_750313.1 1933504 D 318167 CDS YP_750314.1 114562801 4277284 1934361..1936529 1 NC_008345.1 PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: son:SO2195 inter-alpha-trypsin inhibitor domain protein; vault protein inter-alpha-trypsin subunit 1936529 4277284 Sfri_1625 Shewanella frigidimarina NCIMB 400 vault protein inter-alpha-trypsin subunit YP_750314.1 1934361 D 318167 CDS YP_750315.1 114562802 4277285 1936544..1937170 1 NC_008345.1 TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: son:SO2196 LPXTG-site transpeptidase family protein; sortase family protein 1937170 4277285 Sfri_1626 Shewanella frigidimarina NCIMB 400 sortase family protein YP_750315.1 1936544 D 318167 CDS YP_750316.1 114562803 4277286 complement(1937434..1937928) 1 NC_008345.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 1937928 ilvH 4277286 ilvH Shewanella frigidimarina NCIMB 400 acetolactate synthase 3 regulatory subunit YP_750316.1 1937434 R 318167 CDS YP_750317.1 114562804 4277287 complement(1937928..1939646) 1 NC_008345.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: son:SO2279 acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit 1939646 4277287 Sfri_1628 Shewanella frigidimarina NCIMB 400 acetolactate synthase 3 catalytic subunit YP_750317.1 1937928 R 318167 CDS YP_750318.1 114562805 4277288 complement(1940043..1941263) 1 NC_008345.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2280 bicyclomycin resistance protein; Bcr/CflA subfamily drug resistance transporter 1941263 4277288 Sfri_1629 Shewanella frigidimarina NCIMB 400 Bcr/CflA subfamily drug resistance transporter YP_750318.1 1940043 R 318167 CDS YP_750319.1 114562806 4277289 1941625..1943427 1 NC_008345.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: pha:PSHAa2458 sulfate permease protein; sulfate transporter 1943427 4277289 Sfri_1630 Shewanella frigidimarina NCIMB 400 sulfate transporter YP_750319.1 1941625 D 318167 CDS YP_750320.1 114562807 4277290 1943680..1944279 1 NC_008345.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO3563 SM-20 domain protein; 2OG-Fe(II) oxygenase 1944279 4277290 Sfri_1631 Shewanella frigidimarina NCIMB 400 2OG-Fe(II) oxygenase YP_750320.1 1943680 D 318167 CDS YP_750321.1 114562808 4277291 1944464..1945054 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2850 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1945054 4277291 Sfri_1632 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_750321.1 1944464 D 318167 CDS YP_750322.1 114562809 4277292 1945073..1945477 1 NC_008345.1 KEGG: son:SO2848 hypothetical protein; hypothetical protein 1945477 4277292 Sfri_1633 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750322.1 1945073 D 318167 CDS YP_750323.1 114562810 4277293 complement(1945523..1945855) 1 NC_008345.1 PFAM: Uncharacterised conserved protein UCP025560; KEGG: cps:CPS_4712 hypothetical protein; hypothetical protein 1945855 4277293 Sfri_1634 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750323.1 1945523 R 318167 CDS YP_750324.1 114562811 4277294 complement(1945871..1946071) 1 NC_008345.1 KEGG: son:SO2063 hypothetical protein; hypothetical protein 1946071 4277294 Sfri_1635 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750324.1 1945871 R 318167 CDS YP_750325.1 114562812 4277295 complement(1946093..1949269) 1 NC_008345.1 KEGG: son:SO2064 hypothetical protein; hypothetical protein 1949269 4277295 Sfri_1636 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750325.1 1946093 R 318167 CDS YP_750326.1 114562813 4277296 complement(1949720..1950616) 1 NC_008345.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 1950616 4277296 Sfri_1637 Shewanella frigidimarina NCIMB 400 cytidine deaminase YP_750326.1 1949720 R 318167 CDS YP_750327.1 114562814 4277297 complement(1950662..1952083) 1 NC_008345.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 1952083 sbcB 4277297 sbcB Shewanella frigidimarina NCIMB 400 exonuclease I YP_750327.1 1950662 R 318167 CDS YP_750328.1 114562815 4277298 1952270..1953481 1 NC_008345.1 PFAM: phage integrase family protein; KEGG: cps:CPS_2015 site-specific recombinase, phage integrase family; phage integrase family protein 1953481 4277298 Sfri_1639 Shewanella frigidimarina NCIMB 400 phage integrase family protein YP_750328.1 1952270 D 318167 CDS YP_750329.1 114562816 4277299 complement(1953699..1953824) 1 NC_008345.1 KEGG: son:SO3007 hypothetical protein; hypothetical protein 1953824 4277299 Sfri_1640 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750329.1 1953699 R 318167 CDS YP_750330.1 114562817 4277300 complement(1953821..1954063) 1 NC_008345.1 hypothetical protein 1954063 4277300 Sfri_1641 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750330.1 1953821 R 318167 CDS YP_750331.1 114562818 4277301 complement(1954060..1954362) 1 NC_008345.1 hypothetical protein 1954362 4277301 Sfri_1642 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750331.1 1954060 R 318167 CDS YP_750332.1 114562819 4277302 complement(1954363..1954659) 1 NC_008345.1 KEGG: son:SO2664 hypothetical protein; hypothetical protein 1954659 4277302 Sfri_1643 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750332.1 1954363 R 318167 CDS YP_750333.1 114562820 4277303 complement(1954638..1954973) 1 NC_008345.1 hypothetical protein 1954973 4277303 Sfri_1644 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750333.1 1954638 R 318167 CDS YP_750334.1 114562821 4277304 complement(1955140..1955463) 1 NC_008345.1 hypothetical protein 1955463 4277304 Sfri_1645 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750334.1 1955140 R 318167 CDS YP_750335.1 114562822 4277305 1955674..1956555 1 NC_008345.1 KEGG: sao:SAOUHSC_00163 hypothetical protein; hypothetical protein 1956555 4277305 Sfri_1646 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750335.1 1955674 D 318167 CDS YP_750336.1 114562823 4277306 1956521..1957417 1 NC_008345.1 KEGG: sao:SAOUHSC_00164 hypothetical protein; hypothetical protein 1957417 4277306 Sfri_1647 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750336.1 1956521 D 318167 CDS YP_750337.1 114562824 4277307 complement(1957596..1958288) 1 NC_008345.1 PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; KEGG: pae:PA0906 probable transcriptional regulator; putative phage repressor 1958288 4277307 Sfri_1648 Shewanella frigidimarina NCIMB 400 putative phage repressor YP_750337.1 1957596 R 318167 CDS YP_750338.1 114562825 4277308 1958407..1958592 1 NC_008345.1 conserved in bacteria, prophage-related; KEGG: hch:HCH_00596 uncharacterized protein conserved in bacteria, prophage-related; hypothetical protein 1958592 4277308 Sfri_1649 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750338.1 1958407 D 318167 CDS YP_750339.1 114562826 4277309 1958620..1959213 1 NC_008345.1 hypothetical protein 1959213 4277309 Sfri_1650 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750339.1 1958620 D 318167 CDS YP_750340.1 114562827 4277310 1959215..1959418 1 NC_008345.1 KEGG: son:SO2987 hypothetical protein; hypothetical protein 1959418 4277310 Sfri_1651 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750340.1 1959215 D 318167 CDS YP_750341.1 114562828 4277311 1959420..1959638 1 NC_008345.1 KEGG: sdn:Sden_3264 hypothetical protein; hypothetical protein 1959638 4277311 Sfri_1652 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750341.1 1959420 D 318167 CDS YP_750342.1 114562829 4277312 1959953..1960708 1 NC_008345.1 KEGG: hit:NTHI1724 hypothetical protein; hypothetical protein 1960708 4277312 Sfri_1653 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750342.1 1959953 D 318167 CDS YP_750343.1 114562830 4277313 1960705..1961370 1 NC_008345.1 PFAM: replication P family protein; KEGG: hch:HCH_00598 hypothetical protein; replication P family protein 1961370 4277313 Sfri_1654 Shewanella frigidimarina NCIMB 400 replication P family protein YP_750343.1 1960705 D 318167 CDS YP_750344.1 114562831 4277314 1961584..1962846 1 NC_008345.1 PFAM: phage integrase family protein; KEGG: vvy:VVA0857 phage integrase; phage integrase family protein 1962846 4277314 Sfri_1655 Shewanella frigidimarina NCIMB 400 phage integrase family protein YP_750344.1 1961584 D 318167 CDS YP_750345.1 114562832 4277315 1962901..1963119 1 NC_008345.1 PFAM: helix-turn-helix domain protein; KEGG: sdn:Sden_3260 transciptional regulator; transcriptional regulator, XRE family protein 1963119 4277315 Sfri_1656 Shewanella frigidimarina NCIMB 400 transcriptional regulator, XRE family protein YP_750345.1 1962901 D 318167 CDS YP_750346.1 114562833 4277316 1963119..1963487 1 NC_008345.1 hypothetical protein 1963487 4277316 Sfri_1657 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750346.1 1963119 D 318167 CDS YP_750347.1 114562834 4277317 1964529..1965821 1 NC_008345.1 PFAM: putative esterase; KEGG: cps:CPS_4960 putative esterase; putative esterase 1965821 4277317 Sfri_1658 Shewanella frigidimarina NCIMB 400 putative esterase YP_750347.1 1964529 D 318167 CDS YP_750348.1 114562835 4277318 1966349..1966621 1 NC_008345.1 hypothetical protein 1966621 4277318 Sfri_1659 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750348.1 1966349 D 318167 CDS YP_750349.1 114562836 4277319 1966741..1967166 1 NC_008345.1 hypothetical protein 1967166 4277319 Sfri_1660 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750349.1 1966741 D 318167 CDS YP_750350.1 114562837 4277320 1967176..1967532 1 NC_008345.1 hypothetical protein 1967532 4277320 Sfri_1661 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750350.1 1967176 D 318167 CDS YP_750351.1 114562838 4277321 complement(1968027..1969070) 1 NC_008345.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: sde:Sde_3077 response regulator receiver domain protein (CheY-like); transposase IS116/IS110/IS902 family protein 1969070 4277321 Sfri_1662 Shewanella frigidimarina NCIMB 400 transposase IS116/IS110/IS902 family protein YP_750351.1 1968027 R 318167 CDS YP_750352.1 114562839 4277322 1969546..1969959 1 NC_008345.1 PFAM: protein of unknown function DUF1311; KEGG: rbe:RBE_0642 hypothetical protein; hypothetical protein 1969959 4277322 Sfri_1663 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750352.1 1969546 D 318167 CDS YP_750353.1 114562840 4277323 1970410..1970616 1 NC_008345.1 hypothetical protein 1970616 4277323 Sfri_1664 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750353.1 1970410 D 318167 CDS YP_750354.1 114562841 4277324 1970666..1971217 1 NC_008345.1 TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: ppr:PBPRB0776 putative adenylate cyclase CyaB; putative adenylyl cyclase CyaB 1971217 4277324 Sfri_1665 Shewanella frigidimarina NCIMB 400 putative adenylyl cyclase CyaB YP_750354.1 1970666 D 318167 CDS YP_750355.1 114562842 4277325 complement(1971351..1971935) 1 NC_008345.1 KEGG: ssn:SSO_1885 hypothetical bacteriophage protein; phage-encoded protein-like protein 1971935 4277325 Sfri_1666 Shewanella frigidimarina NCIMB 400 phage-encoded protein-like protein YP_750355.1 1971351 R 318167 CDS YP_750356.1 114562843 4277326 1972551..1972991 1 NC_008345.1 hypothetical protein 1972991 4277326 Sfri_1667 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750356.1 1972551 D 318167 CDS YP_750357.1 114562844 4277327 1973418..1974029 1 NC_008345.1 hypothetical protein 1974029 4277327 Sfri_1668 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750357.1 1973418 D 318167 CDS YP_750358.1 114562845 4277328 1974457..1975539 1 NC_008345.1 hypothetical protein 1975539 4277328 Sfri_1669 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750358.1 1974457 D 318167 CDS YP_750359.1 114562846 4277329 1975757..1976560 1 NC_008345.1 hypothetical protein 1976560 4277329 Sfri_1670 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750359.1 1975757 D 318167 CDS YP_750360.1 114562847 4277330 1976940..1977407 1 NC_008345.1 PFAM: glycoside hydrolase, family 24; KEGG: son:SO0659 lysozyme, putative; glycoside hydrolase family protein 1977407 4277330 Sfri_1671 Shewanella frigidimarina NCIMB 400 glycoside hydrolase family protein YP_750360.1 1976940 D 318167 CDS YP_750361.1 114562848 4277331 1977407..1977844 1 NC_008345.1 hypothetical protein 1977844 4277331 Sfri_1672 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750361.1 1977407 D 318167 CDS YP_750362.1 114562849 4277332 1977943..1978287 1 NC_008345.1 hypothetical protein 1978287 4277332 Sfri_1673 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750362.1 1977943 D 318167 CDS YP_750363.1 114562850 4277333 1978291..1978824 1 NC_008345.1 PFAM: phage DNA packaging Nu1; KEGG: ssn:SSO_2431 bacteriophage DNA packaging protein; phage DNA packaging Nu1 1978824 4277333 Sfri_1674 Shewanella frigidimarina NCIMB 400 phage DNA packaging Nu1 YP_750363.1 1978291 D 318167 CDS YP_750364.1 114562851 4277701 1978799..1980781 1 NC_008345.1 PFAM: phage terminase GpA; KEGG: ecs:ECs1630 terminase large subunit; phage terminase GpA 1980781 4277701 Sfri_1675 Shewanella frigidimarina NCIMB 400 phage terminase GpA YP_750364.1 1978799 D 318167 CDS YP_750365.1 114562852 4277702 1980781..1980984 1 NC_008345.1 KEGG: ecs:ECs2962 hypothetical protein; hypothetical protein 1980984 4277702 Sfri_1676 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750365.1 1980781 D 318167 CDS YP_750366.1 114562853 4277703 1980993..1982552 1 NC_008345.1 TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: stm:STM0911 hypothetical protein; phage portal protein, lambda family protein 1982552 4277703 Sfri_1677 Shewanella frigidimarina NCIMB 400 phage portal protein, lambda family protein YP_750366.1 1980993 D 318167 CDS YP_750367.1 114562854 4277704 1982575..1984545 1 NC_008345.1 PFAM: peptidase S14, ClpP; KEGG: stm:STM0912 ATP-dependent protease; peptidase S14, ClpP 1984545 4277704 Sfri_1678 Shewanella frigidimarina NCIMB 400 peptidase S14, ClpP YP_750367.1 1982575 D 318167 CDS YP_750368.1 114562855 4277705 1984649..1984969 1 NC_008345.1 KEGG: stm:STM1034 putative RecA/RadA recombinase; putative RecA/RadA recombinase 1984969 4277705 Sfri_1679 Shewanella frigidimarina NCIMB 400 putative RecA/RadA recombinase YP_750368.1 1984649 D 318167 CDS YP_750369.1 114562856 4277706 1984962..1985267 1 NC_008345.1 hypothetical protein 1985267 4277706 Sfri_1680 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750369.1 1984962 D 318167 CDS YP_750370.1 114562857 4277707 1985278..1985829 1 NC_008345.1 hypothetical protein 1985829 4277707 Sfri_1681 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750370.1 1985278 D 318167 CDS YP_750371.1 114562858 4277708 1985855..1986280 1 NC_008345.1 hypothetical protein 1986280 4277708 Sfri_1682 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750371.1 1985855 D 318167 CDS YP_750372.1 114562859 4277709 1986277..1986996 1 NC_008345.1 KEGG: hch:HCH_02903 hypothetical protein; hypothetical protein 1986996 4277709 Sfri_1683 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750372.1 1986277 D 318167 CDS YP_750373.1 114562860 4277710 1987074..1990952 1 NC_008345.1 TIGRFAM: phage tape measure protein; KEGG: son:SO0680 hypothetical protein; phage tape measure protein 1990952 4277710 Sfri_1684 Shewanella frigidimarina NCIMB 400 phage tape measure protein YP_750373.1 1987074 D 318167 CDS YP_750374.1 114562861 4277711 1990989..1991366 1 NC_008345.1 hypothetical protein 1991366 4277711 Sfri_1685 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750374.1 1990989 D 318167 CDS YP_750375.1 114562862 4277712 1991401..1993839 1 NC_008345.1 KEGG: son:SO0682 hypothetical protein; hypothetical protein 1993839 4277712 Sfri_1686 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750375.1 1991401 D 318167 CDS YP_750376.1 114562863 4277713 1993856..1994815 1 NC_008345.1 KEGG: son:SO0683 hypothetical protein; hypothetical protein 1994815 4277713 Sfri_1687 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750376.1 1993856 D 318167 CDS YP_750377.1 114562864 4277714 1994808..1995095 1 NC_008345.1 hypothetical protein 1995095 4277714 Sfri_1688 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750377.1 1994808 D 318167 CDS YP_750378.1 114562865 4277715 1995092..1996864 1 NC_008345.1 KEGG: son:SO0688 hypothetical protein; hypothetical protein 1996864 4277715 Sfri_1689 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750378.1 1995092 D 318167 CDS YP_750379.1 114562866 4277716 1996898..1997110 1 NC_008345.1 KEGG: sdn:Sden_3237 hypothetical protein; hypothetical protein 1997110 4277716 Sfri_1690 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750379.1 1996898 D 318167 CDS YP_750380.1 114562867 4277717 1997621..1998427 1 NC_008345.1 KEGG: son:SO2789 hypothetical protein; hypothetical protein 1998427 4277717 Sfri_1691 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750380.1 1997621 D 318167 CDS YP_750381.1 114562868 4277718 1998454..1999275 1 NC_008345.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 1999275 rrmA 4277718 rrmA Shewanella frigidimarina NCIMB 400 23S rRNA methyltransferase A YP_750381.1 1998454 D 318167 CDS YP_750382.1 114562869 4277719 1999531..1999737 1 NC_008345.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: son:SO2787 cold shock domain family protein; cold-shock DNA-binding domain-containing protein 1999737 4277719 Sfri_1693 Shewanella frigidimarina NCIMB 400 cold-shock DNA-binding domain-containing protein YP_750382.1 1999531 D 318167 CDS YP_750383.1 114562870 4277720 complement(2000369..2001268) 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1865 ABC transporter, ATP-binding protein; ABC transporter 2001268 4277720 Sfri_1694 Shewanella frigidimarina NCIMB 400 ABC transporter YP_750383.1 2000369 R 318167 CDS YP_750384.1 114562871 4277721 complement(2001265..2002098) 1 NC_008345.1 PFAM: ABC-2 type transporter; KEGG: son:SO1866 hypothetical protein; ABC-2 type transporter 2002098 4277721 Sfri_1695 Shewanella frigidimarina NCIMB 400 ABC-2 type transporter YP_750384.1 2001265 R 318167 CDS YP_750385.1 114562872 4277722 complement(2002136..2002789) 1 NC_008345.1 PFAM: protein of unknown function DUF480; KEGG: son:SO1867 hypothetical protein; hypothetical protein 2002789 4277722 Sfri_1696 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750385.1 2002136 R 318167 CDS YP_750386.1 114562873 4277723 complement(2002895..2003728) 1 NC_008345.1 KEGG: son:SO1868 hypothetical protein; hypothetical protein 2003728 4277723 Sfri_1697 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750386.1 2002895 R 318167 CDS YP_750387.1 114562874 4277724 2004315..2006225 1 NC_008345.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 2006225 4277724 Sfri_1698 Shewanella frigidimarina NCIMB 400 arginine decarboxylase YP_750387.1 2004315 D 318167 CDS YP_750388.1 114562875 4277725 2006470..2007399 1 NC_008345.1 PFAM: S-adenosylmethionine decarboxylase; KEGG: son:SO1871 S-adenosylmethionine decarboxylase proenzyme, putative; adenosylmethionine decarboxylase 2007399 4277725 Sfri_1699 Shewanella frigidimarina NCIMB 400 adenosylmethionine decarboxylase YP_750388.1 2006470 D 318167 CDS YP_750389.1 114562876 4277726 2007757..2007879 1 NC_008345.1 hypothetical protein 2007879 4277726 Sfri_1701 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750389.1 2007757 D 318167 CDS YP_750390.1 114562877 4277727 2007982..2008620 1 NC_008345.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 2008620 4277727 Sfri_1702 Shewanella frigidimarina NCIMB 400 pyridoxamine 5'-phosphate oxidase YP_750390.1 2007982 D 318167 CDS YP_750391.1 114562878 4277728 2008620..2009117 1 NC_008345.1 PFAM: protein of unknown function DUF188; KEGG: son:SO2894 YaiI/YqxD family protein; hypothetical protein 2009117 4277728 Sfri_1703 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750391.1 2008620 D 318167 CDS YP_750392.1 114562879 4277729 2009165..2009743 1 NC_008345.1 PFAM: YceI family protein; KEGG: son:SO2893 hypothetical protein; YceI family protein 2009743 4277729 Sfri_1704 Shewanella frigidimarina NCIMB 400 YceI family protein YP_750392.1 2009165 D 318167 CDS YP_750393.1 114562880 4277730 2009826..2010176 1 NC_008345.1 KEGG: son:SO2891 hypothetical protein; hypothetical protein 2010176 4277730 Sfri_1705 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750393.1 2009826 D 318167 CDS YP_750394.1 114562881 4277731 2010231..2011115 1 NC_008345.1 PFAM: protein of unknown function DUF785; KEGG: vfi:VFA0277 hypothetical protein; hypothetical protein 2011115 4277731 Sfri_1706 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750394.1 2010231 D 318167 CDS YP_750395.1 114562882 4277732 2011639..2014506 1 NC_008345.1 PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: son:SO1844 extracellular nuclease, putative; endonuclease/exonuclease/phosphatase 2014506 4277732 Sfri_1707 Shewanella frigidimarina NCIMB 400 endonuclease/exonuclease/phosphatase YP_750395.1 2011639 D 318167 CDS YP_750396.1 114562883 4277733 2014985..2015968 1 NC_008345.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2015968 pheS 4277733 pheS Shewanella frigidimarina NCIMB 400 phenylalanyl-tRNA synthetase subunit alpha YP_750396.1 2014985 D 318167 CDS YP_750397.1 114562884 4277734 2015984..2018371 1 NC_008345.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2018371 pheT 4277734 pheT Shewanella frigidimarina NCIMB 400 phenylalanyl-tRNA synthetase subunit beta YP_750397.1 2015984 D 318167 CDS YP_750398.1 114562885 4277735 2018375..2018674 1 NC_008345.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2018674 ihfA 4277735 ihfA Shewanella frigidimarina NCIMB 400 integration host factor subunit alpha YP_750398.1 2018375 D 318167 CDS YP_750399.1 114562886 4277490 2018945..2019925 1 NC_008345.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2019925 4277490 Sfri_1711 Shewanella frigidimarina NCIMB 400 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_750399.1 2018945 D 318167 CDS YP_750400.1 114562887 4277491 2019974..2020849 1 NC_008345.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa2182 mechanosensitive ion channel; MscS mechanosensitive ion channel 2020849 4277491 Sfri_1712 Shewanella frigidimarina NCIMB 400 MscS mechanosensitive ion channel YP_750400.1 2019974 D 318167 CDS YP_750401.1 114562888 4277492 complement(2020912..2021532) 1 NC_008345.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2021532 4277492 Sfri_1713 Shewanella frigidimarina NCIMB 400 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_750401.1 2020912 R 318167 CDS YP_750402.1 114562889 4277493 complement(2021591..2022364) 1 NC_008345.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2022364 4277493 Sfri_1714 Shewanella frigidimarina NCIMB 400 imidazole glycerol phosphate synthase subunit HisF YP_750402.1 2021591 R 318167 CDS YP_750403.1 114562890 4277494 complement(2022346..2023083) 1 NC_008345.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2023083 4277494 Sfri_1715 Shewanella frigidimarina NCIMB 400 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_750403.1 2022346 R 318167 CDS YP_750404.1 114562891 4277495 complement(2023080..2023742) 1 NC_008345.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2023742 hisH 4277495 hisH Shewanella frigidimarina NCIMB 400 imidazole glycerol phosphate synthase subunit HisH YP_750404.1 2023080 R 318167 CDS YP_750405.1 114562892 4277496 complement(2023752..2024819) 1 NC_008345.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2024819 4277496 Sfri_1717 Shewanella frigidimarina NCIMB 400 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_750405.1 2023752 R 318167 CDS YP_750406.1 114562893 4277497 complement(2024893..2025942) 1 NC_008345.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2025942 4277497 Sfri_1718 Shewanella frigidimarina NCIMB 400 histidinol-phosphate aminotransferase YP_750406.1 2024893 R 318167 CDS YP_750407.1 114562894 4277498 complement(2026019..2027308) 1 NC_008345.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2027308 hisD 4277498 hisD Shewanella frigidimarina NCIMB 400 histidinol dehydrogenase YP_750407.1 2026019 R 318167 CDS YP_750408.1 114562895 4277499 complement(2027314..2028213) 1 NC_008345.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2028213 hisG 4277499 hisG Shewanella frigidimarina NCIMB 400 ATP phosphoribosyltransferase YP_750408.1 2027314 R 318167 CDS YP_750409.1 114562896 4277500 2029046..2029930 1 NC_008345.1 KEGG: pha:PSHAb0167 putative GGDEF sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 2029930 4277500 Sfri_1721 Shewanella frigidimarina NCIMB 400 PAS/PAC sensor-containing diguanylate cyclase YP_750409.1 2029046 D 318167 CDS YP_750410.1 114562897 4277501 2030121..2030495 1 NC_008345.1 KEGG: sde:Sde_0294 putative transcriptional regulator, fis family; putative transcriptional regulator, fis family protein 2030495 4277501 Sfri_1722 Shewanella frigidimarina NCIMB 400 putative transcriptional regulator, fis family protein YP_750410.1 2030121 D 318167 CDS YP_750411.1 114562898 4277502 complement(2030550..2031101) 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: cps:CPS_3489 hypothetical protein; twin-arginine translocation pathway signal 2031101 4277502 Sfri_1723 Shewanella frigidimarina NCIMB 400 twin-arginine translocation pathway signal YP_750411.1 2030550 R 318167 CDS YP_750412.1 114562899 4277503 complement(2031264..2032607) 1 NC_008345.1 hypothetical protein 2032607 4277503 Sfri_1724 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750412.1 2031264 R 318167 CDS YP_750413.1 114562900 4277504 2032957..2033970 1 NC_008345.1 PFAM: permease; KEGG: cps:CPS_3357 putative permease; permease 2033970 4277504 Sfri_1725 Shewanella frigidimarina NCIMB 400 permease YP_750413.1 2032957 D 318167 CDS YP_750414.1 114562901 4277505 2033987..2034217 1 NC_008345.1 KEGG: rpa:RPA3557 thiol-disulfide isomerase and thioredoxins; thiol-disulfide isomerase and thioredoxins 2034217 4277505 Sfri_1726 Shewanella frigidimarina NCIMB 400 thiol-disulfide isomerase and thioredoxins YP_750414.1 2033987 D 318167 CDS YP_750415.1 114562902 4277506 2034612..2036537 1 NC_008345.1 SMART: helicase c2; KEGG: son:SO2081 ATP-dependent helicase, DinG family; helicase c2 2036537 4277506 Sfri_1727 Shewanella frigidimarina NCIMB 400 helicase c2 YP_750415.1 2034612 D 318167 CDS YP_750416.1 114562903 4277507 2036611..2037312 1 NC_008345.1 PFAM: peptidase M22, glycoprotease; KEGG: son:SO2586 hypothetical protein; peptidase M22, glycoprotease 2037312 4277507 Sfri_1728 Shewanella frigidimarina NCIMB 400 peptidase M22, glycoprotease YP_750416.1 2036611 D 318167 CDS YP_750417.1 114562904 4277508 2037372..2037701 1 NC_008345.1 KEGG: son:SO2585 hypothetical protein; hypothetical protein 2037701 4277508 Sfri_1729 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750417.1 2037372 D 318167 CDS YP_750418.1 114562905 4277509 2037694..2038371 1 NC_008345.1 KEGG: son:SO2584 hypothetical protein; hypothetical protein 2038371 4277509 Sfri_1730 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750418.1 2037694 D 318167 CDS YP_750419.1 114562906 4277510 2038368..2039231 1 NC_008345.1 KEGG: son:SO2583 hypothetical protein; hypothetical protein 2039231 4277510 Sfri_1731 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750419.1 2038368 D 318167 CDS YP_750420.1 114562907 4277511 2039253..2040146 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO2582 hydrolase, alpha/beta fold family; alpha/beta hydrolase 2040146 4277511 Sfri_1732 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase YP_750420.1 2039253 D 318167 CDS YP_750421.1 114562908 4277512 2040345..2042018 1 NC_008345.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2042018 4277512 Sfri_1733 Shewanella frigidimarina NCIMB 400 long-chain-fatty-acid--CoA ligase YP_750421.1 2040345 D 318167 CDS YP_750422.1 114562909 4277513 2042108..2043220 1 NC_008345.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: son:SO2580 ribonuclease D; ribonuclease D 2043220 4277513 Sfri_1734 Shewanella frigidimarina NCIMB 400 ribonuclease D YP_750422.1 2042108 D 318167 CDS YP_750423.1 114562910 4277514 complement(2043323..2043583) 1 NC_008345.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 2043583 minE 4277514 minE Shewanella frigidimarina NCIMB 400 cell division topological specificity factor MinE YP_750423.1 2043323 R 318167 CDS YP_750424.1 114562911 4277515 complement(2043586..2044395) 1 NC_008345.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO2577 septum site-determining protein MinD; septum site-determining protein MinD 2044395 4277515 Sfri_1736 Shewanella frigidimarina NCIMB 400 septum site-determining protein MinD YP_750424.1 2043586 R 318167 CDS YP_750425.1 114562912 4277516 complement(2044423..2045088) 1 NC_008345.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 2045088 minC 4277516 minC Shewanella frigidimarina NCIMB 400 septum formation inhibitor YP_750425.1 2044423 R 318167 CDS YP_750426.1 114562913 4277517 2045207..2045485 1 NC_008345.1 PFAM: protein of unknown function DUF709; KEGG: son:SO2575 hypothetical protein; hypothetical protein 2045485 4277517 Sfri_1738 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750426.1 2045207 D 318167 CDS YP_750427.1 114562914 4277518 2045517..2046485 1 NC_008345.1 KEGG: ilo:IL1824 membrane-bound lytic murein transglycosylase; membrane-bound lytic murein transglycosylase 2046485 4277518 Sfri_1739 Shewanella frigidimarina NCIMB 400 membrane-bound lytic murein transglycosylase YP_750427.1 2045517 D 318167 CDS YP_750428.1 114562915 4277519 2046548..2046994 1 NC_008345.1 PFAM: protein of unknown function UPF0153; KEGG: son:SO2573 hypothetical protein; hypothetical protein 2046994 4277519 Sfri_1740 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750428.1 2046548 D 318167 CDS YP_750429.1 114562916 4277520 complement(2047065..2047574) 1 NC_008345.1 PFAM: Disulphide bond formation protein DsbB; KEGG: son:SO2887 disulfide bond formation protein b; disulfide bond formation protein DsbB 2047574 4277520 Sfri_1741 Shewanella frigidimarina NCIMB 400 disulfide bond formation protein DsbB YP_750429.1 2047065 R 318167 CDS YP_750430.1 114562917 4277521 complement(2047688..2049274) 1 NC_008345.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 2049274 nhaB 4277521 nhaB Shewanella frigidimarina NCIMB 400 sodium/proton antiporter YP_750430.1 2047688 R 318167 CDS YP_750431.1 114562918 4277522 2049865..2050584 1 NC_008345.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 2050584 4277522 Sfri_1743 Shewanella frigidimarina NCIMB 400 fatty acid metabolism regulator YP_750431.1 2049865 D 318167 CDS YP_750432.1 114562919 4277523 complement(2050676..2052217) 1 NC_008345.1 PFAM: SpoVR family protein; KEGG: son:SO2884 hypothetical protein; SpoVR family protein 2052217 4277523 Sfri_1744 Shewanella frigidimarina NCIMB 400 SpoVR family protein YP_750432.1 2050676 R 318167 CDS YP_750433.1 114562920 4277524 complement(2052227..2053492) 1 NC_008345.1 PFAM: protein of unknown function DUF444; KEGG: son:SO2883 hypothetical protein; hypothetical protein 2053492 4277524 Sfri_1745 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750433.1 2052227 R 318167 CDS YP_750434.1 114562921 4277525 complement(2053556..2055490) 1 NC_008345.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: son:SO2882 hypothetical Ser protein kinas; putative serine protein kinase PrkA 2055490 4277525 Sfri_1746 Shewanella frigidimarina NCIMB 400 putative serine protein kinase PrkA YP_750434.1 2053556 R 318167 CDS YP_750435.1 114562922 4277526 complement(2055788..2056372) 1 NC_008345.1 PFAM: manganese and iron superoxide dismutase; KEGG: son:SO2881 superoxide dismutase, Fe; superoxide dismutase 2056372 4277526 Sfri_1747 Shewanella frigidimarina NCIMB 400 superoxide dismutase YP_750435.1 2055788 R 318167 CDS YP_750436.1 114562923 4277527 2056608..2056949 1 NC_008345.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: son:SO2880 glutaredoxin domain protein; glutaredoxin-like protein 2056949 4277527 Sfri_1748 Shewanella frigidimarina NCIMB 400 glutaredoxin-like protein YP_750436.1 2056608 D 318167 CDS YP_750437.1 114562924 4277528 complement(2057076..2058305) 1 NC_008345.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: son:SO2879 uracil permease; uracil-xanthine permease 2058305 4277528 Sfri_1749 Shewanella frigidimarina NCIMB 400 uracil-xanthine permease YP_750437.1 2057076 R 318167 CDS YP_750438.1 114562925 4277529 2058544..2059641 1 NC_008345.1 KEGG: son:SO2878 hypothetical protein; hypothetical protein 2059641 4277529 Sfri_1750 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750438.1 2058544 D 318167 CDS YP_750439.1 114562926 4277530 2059795..2060505 1 NC_008345.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 2060505 4277530 Sfri_1751 Shewanella frigidimarina NCIMB 400 DNA replication initiation factor YP_750439.1 2059795 D 318167 CDS YP_750440.1 114562927 4277531 complement(2060620..2062560) 1 NC_008345.1 KEGG: son:SO2876 hypothetical protein; hypothetical protein 2062560 4277531 Sfri_1752 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750440.1 2060620 R 318167 CDS YP_750441.1 114562928 4277532 complement(2062710..2063087) 1 NC_008345.1 KEGG: son:SO2872 hypothetical protein; hypothetical protein 2063087 4277532 Sfri_1753 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750441.1 2062710 R 318167 CDS YP_750442.1 114562929 4277533 complement(2063099..2063461) 1 NC_008345.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: son:SO2871 arsenate reductase, putative; arsenate reductase 2063461 4277533 Sfri_1754 Shewanella frigidimarina NCIMB 400 arsenate reductase YP_750442.1 2063099 R 318167 CDS YP_750443.1 114562930 4277534 complement(2063553..2065022) 1 NC_008345.1 PFAM: peptidase M48, Ste24p; KEGG: son:SO2869 hypothetical protein; peptidase M48, Ste24p 2065022 4277534 Sfri_1755 Shewanella frigidimarina NCIMB 400 peptidase M48, Ste24p YP_750443.1 2063553 R 318167 CDS YP_750444.1 114562931 4277535 2065150..2065371 1 NC_008345.1 PFAM: SirA family protein; KEGG: son:SO2868 hypothetical protein; SirA family protein 2065371 4277535 Sfri_1756 Shewanella frigidimarina NCIMB 400 SirA family protein YP_750444.1 2065150 D 318167 CDS YP_750445.1 114562932 4277536 2065397..2066479 1 NC_008345.1 PFAM: protein of unknown function UPF0118; KEGG: son:SO2867 permease PerM, putative; hypothetical protein 2066479 4277536 Sfri_1757 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750445.1 2065397 D 318167 CDS YP_750446.1 114562933 4277537 complement(2066751..2066984) 1 NC_008345.1 KEGG: son:SO2479 hypothetical protein; hypothetical protein 2066984 4277537 Sfri_1758 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750446.1 2066751 R 318167 CDS YP_750447.1 114562934 4277538 complement(2067061..2067798) 1 NC_008345.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2067798 4277538 Sfri_1759 Shewanella frigidimarina NCIMB 400 3-deoxy-manno-octulosonate cytidylyltransferase YP_750447.1 2067061 R 318167 CDS YP_750448.1 114562935 4277539 complement(2067887..2068957) 1 NC_008345.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO2477 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 2068957 4277539 Sfri_1760 Shewanella frigidimarina NCIMB 400 iron-containing alcohol dehydrogenase YP_750448.1 2067887 R 318167 CDS YP_750449.1 114562936 4277540 complement(2069029..2070213) 1 NC_008345.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO2476 polysaccharide biosynthesis protein; DegT/DnrJ/EryC1/StrS aminotransferase 2070213 4277540 Sfri_1761 Shewanella frigidimarina NCIMB 400 DegT/DnrJ/EryC1/StrS aminotransferase YP_750449.1 2069029 R 318167 CDS YP_750450.1 114562937 4277541 complement(2070383..2070997) 1 NC_008345.1 PFAM: carbonic anhydrase; KEGG: son:SO2474 carbonic anhydrase family protein; carbonate dehydratase 2070997 4277541 Sfri_1762 Shewanella frigidimarina NCIMB 400 carbonate dehydratase YP_750450.1 2070383 R 318167 CDS YP_750451.1 114562938 4277542 complement(2071107..2071955) 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO2473 hydrolase, alpha/beta fold family; alpha/beta hydrolase 2071955 4277542 Sfri_1763 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase YP_750451.1 2071107 R 318167 CDS YP_750452.1 114562939 4277543 complement(2071991..2072701) 1 NC_008345.1 PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: son:SO2472 D-alanyl-D-alanine carboxypeptidase-related protein; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins 2072701 4277543 Sfri_1764 Shewanella frigidimarina NCIMB 400 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins YP_750452.1 2071991 R 318167 CDS YP_750453.1 114562940 4277544 complement(2072692..2073825) 1 NC_008345.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2073825 4277544 Sfri_1765 Shewanella frigidimarina NCIMB 400 succinyl-diaminopimelate desuccinylase YP_750453.1 2072692 R 318167 CDS YP_750454.1 114562941 4277545 complement(2073825..2074166) 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; PFAM: arsenate reductase and related; KEGG: son:SO2470 hypothetical protein; hypothetical protein 2074166 4277545 Sfri_1766 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750454.1 2073825 R 318167 CDS YP_750455.1 114562942 4277546 complement(2074442..2074951) 1 NC_008345.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2074951 4277546 Sfri_1767 Shewanella frigidimarina NCIMB 400 PTS system glucose-specific transporter YP_750455.1 2074442 R 318167 CDS YP_750456.1 114562943 4277547 complement(2075030..2076754) 1 NC_008345.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: son:SO2237 phosphotransferase system, enzyme I; phosphoenolpyruvate-protein phosphotransferase 2076754 4277547 Sfri_1768 Shewanella frigidimarina NCIMB 400 phosphoenolpyruvate-protein phosphotransferase YP_750456.1 2075030 R 318167 CDS YP_750457.1 114562944 4277548 complement(2076767..2077033) 1 NC_008345.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: son:SO2238 phosphocarrier protein HPr; phosphocarrier, HPr family protein 2077033 4277548 Sfri_1769 Shewanella frigidimarina NCIMB 400 phosphocarrier, HPr family protein YP_750457.1 2076767 R 318167 CDS YP_750458.1 114562945 4277549 complement(2077358..2078974) 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO2240 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2078974 4277549 Sfri_1770 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_750458.1 2077358 R 318167 CDS YP_750459.1 114562946 4277550 2079251..2079961 1 NC_008345.1 KEGG: son:SO2241 hypothetical protein; hypothetical protein 2079961 4277550 Sfri_1771 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750459.1 2079251 D 318167 CDS YP_750460.1 114562947 4277551 2080049..2081086 1 NC_008345.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO2244 transcriptional regulator, LacI family; transcriptional regulator, LacI family protein 2081086 4277551 Sfri_1772 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LacI family protein YP_750460.1 2080049 D 318167 CDS YP_750461.1 114562948 4277552 2081283..2082215 1 NC_008345.1 PFAM: protein of unknown function DUF808; KEGG: son:SO1151 hypothetical protein; hypothetical protein 2082215 4277552 Sfri_1773 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750461.1 2081283 D 318167 CDS YP_750462.1 114562949 4277553 complement(2082381..2082776) 1 NC_008345.1 PFAM: protein of unknown function DUF805; KEGG: stm:STM3234 putative inner membrane protein; hypothetical protein 2082776 4277553 Sfri_1774 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750462.1 2082381 R 318167 CDS YP_750463.1 114562950 4277554 complement(2082950..2085412) 1 NC_008345.1 PFAM: glycoside hydrolase 15-related; KEGG: son:SO2459 glucoamylase; glucan 1,4-alpha-glucosidase 2085412 4277554 Sfri_1775 Shewanella frigidimarina NCIMB 400 glucan 1,4-alpha-glucosidase YP_750463.1 2082950 R 318167 CDS YP_750464.1 114562951 4277555 complement(2085470..2087029) 1 NC_008345.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2458 transporter, putative; major facilitator transporter 2087029 4277555 Sfri_1776 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_750464.1 2085470 R 318167 CDS YP_750465.1 114562952 4277556 complement(2087427..2089520) 1 NC_008345.1 KEGG: son:SO2450 alpha-glucosidase; alpha-glucosidase 2089520 4277556 Sfri_1777 Shewanella frigidimarina NCIMB 400 alpha-glucosidase YP_750465.1 2087427 R 318167 CDS YP_750466.1 114562953 4277557 complement(2089745..2090341) 1 NC_008345.1 PFAM: protein of unknown function DUF358; KEGG: ppr:PBPRA1526 hypothetical protein; hypothetical protein 2090341 4277557 Sfri_1778 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750466.1 2089745 R 318167 CDS YP_750467.1 114562954 4277558 complement(2090743..2091606) 1 NC_008345.1 KEGG: cps:CPS_0256 hypothetical protein; hypothetical protein 2091606 4277558 Sfri_1779 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750467.1 2090743 R 318167 CDS YP_750468.1 114562955 4277559 complement(2091911..2093104) 1 NC_008345.1 PFAM: proton/sugar symporter, LacY; major facilitator superfamily MFS_1; KEGG: pab:PAB0874 hypothetical protein; major facilitator transporter 2093104 4277559 Sfri_1780 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_750468.1 2091911 R 318167 CDS YP_750469.1 114562956 4277420 2093495..2094352 1 NC_008345.1 PFAM: UspA domain protein; KEGG: mma:MM3222 hypothetical protein; UspA domain-containing protein 2094352 4277420 Sfri_1781 Shewanella frigidimarina NCIMB 400 UspA domain-containing protein YP_750469.1 2093495 D 318167 CDS YP_750470.1 114562957 4277421 2094378..2094575 1 NC_008345.1 KEGG: rfr:Rfer_4032 hypothetical protein; hypothetical protein 2094575 4277421 Sfri_1782 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750470.1 2094378 D 318167 CDS YP_750471.1 114562958 4277422 2094854..2095096 1 NC_008345.1 KEGG: eca:ECA2743 hypothetical protein; hypothetical protein 2095096 4277422 Sfri_1783 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750471.1 2094854 D 318167 CDS YP_750472.1 114562959 4277423 complement(2095550..2097580) 1 NC_008345.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: son:SO2156 alpha amylase family protein; alpha amylase, catalytic region 2097580 4277423 Sfri_1784 Shewanella frigidimarina NCIMB 400 alpha amylase, catalytic region YP_750472.1 2095550 R 318167 CDS YP_750473.1 114562960 4277424 complement(2097631..2099550) 1 NC_008345.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: pha:PSHAa1354 alpha-amylase; alpha amylase, catalytic region 2099550 4277424 Sfri_1785 Shewanella frigidimarina NCIMB 400 alpha amylase, catalytic region YP_750473.1 2097631 R 318167 CDS YP_750474.1 114562961 4277425 complement(2099613..2101136) 1 NC_008345.1 PFAM: tryptophan halogenase; KEGG: pha:PSHAa1353 tryptophan halogenase; tryptophan halogenase 2101136 4277425 Sfri_1786 Shewanella frigidimarina NCIMB 400 tryptophan halogenase YP_750474.1 2099613 R 318167 CDS YP_750475.1 114562962 4277426 complement(2101253..2103973) 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa1352 TonB-dependent receptor protein; TonB-dependent receptor 2103973 4277426 Sfri_1787 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor YP_750475.1 2101253 R 318167 CDS YP_750476.1 114562963 4277427 2104478..2106112 1 NC_008345.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: son:SO2213 alpha-glucosidase; alpha amylase 2106112 4277427 Sfri_1788 Shewanella frigidimarina NCIMB 400 alpha amylase YP_750476.1 2104478 D 318167 CDS YP_750477.1 114562964 4277428 2106279..2107544 1 NC_008345.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3705 glucose/galactose transporter family protein; glucose/galactose transporter 2107544 4277428 Sfri_1789 Shewanella frigidimarina NCIMB 400 glucose/galactose transporter YP_750477.1 2106279 D 318167 CDS YP_750478.1 114562965 4277429 2107849..2109063 1 NC_008345.1 PFAM: Fmu (Sun) domain protein; KEGG: son:SO2215 sun protein, putative; Fmu (Sun) domain-containing protein 2109063 4277429 Sfri_1790 Shewanella frigidimarina NCIMB 400 Fmu (Sun) domain-containing protein YP_750478.1 2107849 D 318167 CDS YP_750479.1 114562966 4277430 2109269..2111542 1 NC_008345.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO2216 sensory box protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2111542 4277430 Sfri_1791 Shewanella frigidimarina NCIMB 400 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_750479.1 2109269 D 318167 CDS YP_750480.1 114562967 4277431 2112221..2114476 1 NC_008345.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO2216 sensory box protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2114476 4277431 Sfri_1792 Shewanella frigidimarina NCIMB 400 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_750480.1 2112221 D 318167 CDS YP_750481.1 114562968 4277432 complement(2114600..2115736) 1 NC_008345.1 TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: pha:PSHAa1718 alanine dehydrogenase; alanine dehydrogenase 2115736 4277432 Sfri_1793 Shewanella frigidimarina NCIMB 400 alanine dehydrogenase YP_750481.1 2114600 R 318167 CDS YP_750482.1 114562969 4277433 2115898..2116395 1 NC_008345.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 2116395 4277433 Sfri_1794 Shewanella frigidimarina NCIMB 400 leucine-responsive transcriptional regulator YP_750482.1 2115898 D 318167 CDS YP_750483.1 114562970 4277434 2116668..2119322 1 NC_008345.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: son:SO2306 cell division protein FtsK, putative; cell division protein FtsK 2119322 4277434 Sfri_1795 Shewanella frigidimarina NCIMB 400 cell division protein FtsK YP_750483.1 2116668 D 318167 CDS YP_750484.1 114562971 4277435 2119334..2119978 1 NC_008345.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: son:SO2307 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 2119978 4277435 Sfri_1796 Shewanella frigidimarina NCIMB 400 outer membrane lipoprotein carrier protein LolA YP_750484.1 2119334 D 318167 CDS YP_750485.1 114562972 4277436 2119987..2121318 1 NC_008345.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO2308 ATPase, AAA family; recombination factor protein RarA 2121318 4277436 Sfri_1797 Shewanella frigidimarina NCIMB 400 recombination factor protein RarA YP_750485.1 2119987 D 318167 CDS YP_750486.1 114562973 4277437 2121311..2121685 1 NC_008345.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2121685 4277437 Sfri_1798 Shewanella frigidimarina NCIMB 400 camphor resistance protein CrcB YP_750486.1 2121311 D 318167 CDS YP_750487.1 114562974 4277438 2121704..2122990 1 NC_008345.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2122990 4277438 Sfri_1799 Shewanella frigidimarina NCIMB 400 seryl-tRNA synthetase YP_750487.1 2121704 D 318167 CDS YP_750488.1 114562975 4277439 complement(2123475..2123813) 1 NC_008345.1 PFAM: DsrC family protein; KEGG: son:SO2379 putative sulfite reductase; DsrC family protein 2123813 4277439 Sfri_1800 Shewanella frigidimarina NCIMB 400 DsrC family protein YP_750488.1 2123475 R 318167 CDS YP_750489.1 114562976 4277440 complement(2123807..2124115) 1 NC_008345.1 KEGG: son:SO2378 putative uncharacterized protein involved in oxidation of intracellular sulfur; hypothetical protein 2124115 4277440 Sfri_1801 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750489.1 2123807 R 318167 CDS YP_750490.1 114562977 4277441 complement(2124112..2124468) 1 NC_008345.1 PFAM: DsrE family protein; KEGG: son:SO2377 putative uncharacterized protein involved in oxidation of intracellular sulfur; DsrE family protein 2124468 4277441 Sfri_1802 Shewanella frigidimarina NCIMB 400 DsrE family protein YP_750490.1 2124112 R 318167 CDS YP_750491.1 114562978 4277442 complement(2124488..2124877) 1 NC_008345.1 PFAM: DsrE family protein; KEGG: son:SO2376 DsrE-related protein; DsrE family protein 2124877 4277442 Sfri_1803 Shewanella frigidimarina NCIMB 400 DsrE family protein YP_750491.1 2124488 R 318167 CDS YP_750492.1 114562979 4277443 complement(2124943..2125602) 1 NC_008345.1 PFAM: protein of unknown function UPF0005; KEGG: son:SO2375 membrane protein, putative; hypothetical protein 2125602 4277443 Sfri_1804 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750492.1 2124943 R 318167 CDS YP_750493.1 114562980 4277444 complement(2125820..2126722) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2374 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator 2126722 4277444 Sfri_1805 Shewanella frigidimarina NCIMB 400 putative DNA-binding transcriptional regulator YP_750493.1 2125820 R 318167 CDS YP_750494.1 114562981 4277445 2127797..2128474 1 NC_008345.1 KEGG: nmu:Nmul_A0181 hypothetical protein; hypothetical protein 2128474 4277445 Sfri_1806 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750494.1 2127797 D 318167 CDS YP_750495.1 114562982 4277446 2128486..2130168 1 NC_008345.1 PFAM: ABC-1 domain protein; KEGG: xcb:XC_2511 ubiquinone biosynthesis protein; hypothetical protein 2130168 4277446 Sfri_1807 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750495.1 2128486 D 318167 CDS YP_750496.1 114562983 4277447 2130914..2132458 1 NC_008345.1 PFAM: chemotaxis sensory transducer; KEGG: cps:CPS_4961 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2132458 4277447 Sfri_1808 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_750496.1 2130914 D 318167 CDS YP_750497.1 114562984 4277448 2133187..2134767 1 NC_008345.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vfi:VF2515 glycine betaine transporter; choline/carnitine/betaine transporter 2134767 4277448 Sfri_1809 Shewanella frigidimarina NCIMB 400 choline/carnitine/betaine transporter YP_750497.1 2133187 D 318167 CDS YP_750498.1 114562985 4277449 complement(2134885..2135601) 1 NC_008345.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 2135601 4277449 Sfri_1810 Shewanella frigidimarina NCIMB 400 DNA polymerase III subunit epsilon YP_750498.1 2134885 R 318167 CDS YP_750499.1 114562986 4277450 complement(2135612..2137489) 1 NC_008345.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: vfi:VF2513 cyclic nucleotide binding protein/2 CBS domains; cyclic nucleotide-binding protein 2137489 4277450 Sfri_1811 Shewanella frigidimarina NCIMB 400 cyclic nucleotide-binding protein YP_750499.1 2135612 R 318167 CDS YP_750500.1 114562987 4277451 complement(2137928..2139133) 1 NC_008345.1 PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_0817 hypothetical protein; hypothetical protein 2139133 4277451 Sfri_1812 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750500.1 2137928 R 318167 CDS YP_750501.1 114562988 4277452 complement(2139133..2139843) 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1413 ABC transporter ATPase; ABC transporter 2139843 4277452 Sfri_1813 Shewanella frigidimarina NCIMB 400 ABC transporter YP_750501.1 2139133 R 318167 CDS YP_750502.1 114562989 4277453 complement(2139852..2141150) 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tbd:Tbd_1414 secretion protein HlyD; RND family efflux transporter MFP subunit 2141150 4277453 Sfri_1814 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_750502.1 2139852 R 318167 CDS YP_750503.1 114562990 4277454 2141736..2142707 1 NC_008345.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: pha:PSHAa2878 curved DNA-binding protein, co-chaperone of DnaK (HSP40); heat shock protein DnaJ domain-containing protein 2142707 4277454 Sfri_1815 Shewanella frigidimarina NCIMB 400 heat shock protein DnaJ domain-containing protein YP_750503.1 2141736 D 318167 CDS YP_750504.1 114562991 4278084 2142710..2143027 1 NC_008345.1 KEGG: pha:PSHAa2877 hypothetical protein; hypothetical protein 2143027 4278084 Sfri_1816 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750504.1 2142710 D 318167 CDS YP_750505.1 114562992 4278085 2143466..2144704 1 NC_008345.1 KEGG: dps:DP0206 probable glycine betaine/L-proline transport ATP-binding protein (ProV); TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 2144704 4278085 Sfri_1817 Shewanella frigidimarina NCIMB 400 glycine betaine/L-proline ABC transporter ATPase YP_750505.1 2143466 D 318167 CDS YP_750506.1 114562993 4278086 2144731..2145582 1 NC_008345.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP0207 probable glycine betaine/L-proline transport system permease protein (ProW); binding-protein-dependent transport system inner membrane protein 2145582 4278086 Sfri_1818 Shewanella frigidimarina NCIMB 400 binding-protein-dependent transport system inner membrane protein YP_750506.1 2144731 D 318167 CDS YP_750507.1 114562994 4278087 2145579..2146613 1 NC_008345.1 with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 2146613 proX 4278087 proX Shewanella frigidimarina NCIMB 400 glycine betaine transporter periplasmic subunit YP_750507.1 2145579 D 318167 CDS YP_750508.1 114562995 4278088 2146961..2147995 1 NC_008345.1 with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 2147995 proX 4278088 proX Shewanella frigidimarina NCIMB 400 glycine betaine transporter periplasmic subunit YP_750508.1 2146961 D 318167 CDS YP_750509.1 114562996 4278089 complement(2148238..2149419) 1 NC_008345.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; KEGG: cac:CAC0490 predicted sugar kinase, N-terminal region - uncharacterized conserved protein; carbohydrate kinase 2149419 4278089 Sfri_1821 Shewanella frigidimarina NCIMB 400 carbohydrate kinase YP_750509.1 2148238 R 318167 CDS YP_750510.1 114562997 4278090 2149707..2150837 1 NC_008345.1 KEGG: cps:CPS_1821 acyltransferase family protein; hypothetical protein 2150837 4278090 Sfri_1822 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750510.1 2149707 D 318167 CDS YP_750511.1 114562998 4278091 complement(2150912..2152129) 1 NC_008345.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cps:CPS_4619 HD domain protein; metal dependent phosphohydrolase 2152129 4278091 Sfri_1823 Shewanella frigidimarina NCIMB 400 metal dependent phosphohydrolase YP_750511.1 2150912 R 318167 CDS YP_750512.1 114562999 4278092 complement(2152471..2153256) 1 NC_008345.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: ppu:PP1869 hypothetical protein; extradiol ring-cleavage dioxygenase III subunit B 2153256 4278092 Sfri_1824 Shewanella frigidimarina NCIMB 400 extradiol ring-cleavage dioxygenase III subunit B YP_750512.1 2152471 R 318167 CDS YP_750513.1 114563000 4278093 complement(2153334..2154281) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_0421 transcription regulator, LysR family; transcriptional regulator, LysR family protein 2154281 4278093 Sfri_1825 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_750513.1 2153334 R 318167 CDS YP_750514.1 114563001 4278094 2154308..2154733 1 NC_008345.1 PFAM: transmembrane pair domain protein; KEGG: cps:CPS_0422 hypothetical protein; transmembrane pair domain-containing protein 2154733 4278094 Sfri_1826 Shewanella frigidimarina NCIMB 400 transmembrane pair domain-containing protein YP_750514.1 2154308 D 318167 CDS YP_750515.1 114563002 4278095 2154866..2155297 1 NC_008345.1 KEGG: cps:CPS_4709 hypothetical protein; hypothetical protein 2155297 4278095 Sfri_1827 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750515.1 2154866 D 318167 CDS YP_750516.1 114563003 4278096 2156065..2156715 1 NC_008345.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: cps:CPS_3420 DNA-binding response regulator, LuxR family; two component transcriptional regulator, LuxR family protein 2156715 4278096 Sfri_1828 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, LuxR family protein YP_750516.1 2156065 D 318167 CDS YP_750517.1 114563004 4278097 complement(2156724..2160281) 1 NC_008345.1 PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cps:CPS_3419 sensory box sensor histidine kinase/response regulator; periplasmic sensor hybrid histidine kinase 2160281 4278097 Sfri_1829 Shewanella frigidimarina NCIMB 400 periplasmic sensor hybrid histidine kinase YP_750517.1 2156724 R 318167 CDS YP_750518.1 114563005 4278098 2161654..2162463 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_3417 putative branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter 2162463 4278098 Sfri_1831 Shewanella frigidimarina NCIMB 400 ABC transporter YP_750518.1 2161654 D 318167 CDS YP_750519.1 114563006 4278099 2162463..2164430 1 NC_008345.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cps:CPS_3416 putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding; AMP-dependent synthetase and ligase 2164430 4278099 Sfri_1832 Shewanella frigidimarina NCIMB 400 AMP-dependent synthetase and ligase YP_750519.1 2162463 D 318167 CDS YP_750520.1 114563007 4278100 2164427..2165320 1 NC_008345.1 PFAM: inner-membrane translocator; KEGG: cps:CPS_3415 putative branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 2165320 4278100 Sfri_1833 Shewanella frigidimarina NCIMB 400 inner-membrane translocator YP_750520.1 2164427 D 318167 CDS YP_750521.1 114563008 4278101 2165417..2166490 1 NC_008345.1 PFAM: inner-membrane translocator; KEGG: cps:CPS_3414 putative branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 2166490 4278101 Sfri_1834 Shewanella frigidimarina NCIMB 400 inner-membrane translocator YP_750521.1 2165417 D 318167 CDS YP_750522.1 114563009 4278102 2166579..2167826 1 NC_008345.1 KEGG: cps:CPS_3413 putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein; putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein 2167826 4278102 Sfri_1835 Shewanella frigidimarina NCIMB 400 putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein YP_750522.1 2166579 D 318167 CDS YP_750523.1 114563010 4278103 2167927..2168748 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_3412 putative branched chain amino acid ABC transporter, ATP-binding protein; ABC transporter 2168748 4278103 Sfri_1836 Shewanella frigidimarina NCIMB 400 ABC transporter YP_750523.1 2167927 D 318167 CDS YP_750524.1 114563011 4278104 2168811..2170088 1 NC_008345.1 KEGG: cps:CPS_3411 putative phenylacetate-coenzyme A ligase; putative phenylacetate-coenzyme A ligase 2170088 4278104 Sfri_1837 Shewanella frigidimarina NCIMB 400 putative phenylacetate-coenzyme A ligase YP_750524.1 2168811 D 318167 CDS YP_750525.1 114563012 4278105 2170446..2170940 1 NC_008345.1 PFAM: thioesterase superfamily protein; KEGG: cps:CPS_3410 hypothetical protein; thioesterase superfamily protein 2170940 4278105 Sfri_1838 Shewanella frigidimarina NCIMB 400 thioesterase superfamily protein YP_750525.1 2170446 D 318167 CDS YP_750526.1 114563013 4278106 2171480..2171938 1 NC_008345.1 KEGG: vfi:VF1080 hypothetical protein; hypothetical protein 2171938 4278106 Sfri_1839 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750526.1 2171480 D 318167 CDS YP_750527.1 114563014 4278107 2172379..2172849 1 NC_008345.1 PFAM: Ferritin, Dps family protein; KEGG: tcx:Tcr_1226 ferritin and Dps; Ferritin, Dps family protein 2172849 4278107 Sfri_1840 Shewanella frigidimarina NCIMB 400 Ferritin, Dps family protein YP_750527.1 2172379 D 318167 CDS YP_750528.1 114563015 4278108 complement(2173025..2173612) 1 NC_008345.1 PFAM: regulatory protein, TetR; KEGG: vfi:VF1081 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein 2173612 4278108 Sfri_1841 Shewanella frigidimarina NCIMB 400 transcriptional regulator, TetR family protein YP_750528.1 2173025 R 318167 CDS YP_750529.1 114563016 4278109 complement(2174016..2175422) 1 NC_008345.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: pha:PSHAb0545 putative amino acid permease; amino acid carrier protein 2175422 4278109 Sfri_1842 Shewanella frigidimarina NCIMB 400 amino acid carrier protein YP_750529.1 2174016 R 318167 CDS YP_750530.1 114563017 4278110 2175813..2177186 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4173 sensor histidine kinase; sensor signal transduction histidine kinase 2177186 4278110 Sfri_1843 Shewanella frigidimarina NCIMB 400 sensor signal transduction histidine kinase YP_750530.1 2175813 D 318167 CDS YP_750531.1 114563018 4278111 2177207..2177749 1 NC_008345.1 PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: son:SO4172 DNA-binding response regulator; response regulator receiver protein 2177749 4278111 Sfri_1844 Shewanella frigidimarina NCIMB 400 response regulator receiver protein YP_750531.1 2177207 D 318167 CDS YP_750532.1 114563019 4278112 2178319..2179512 1 NC_008345.1 PFAM: transposase, IS4 family protein; KEGG: ret:RHE_CH01332 probable insertion sequence transposase protein, IS10; transposase, IS4 family protein 2179512 4278112 Sfri_1845 Shewanella frigidimarina NCIMB 400 transposase, IS4 family protein YP_750532.1 2178319 D 318167 CDS YP_750533.1 114563020 4278113 complement(2179865..2182477) 1 NC_008345.1 KEGG: ava:Ava_2971 WD-40 repeat; hypothetical protein 2182477 4278113 Sfri_1847 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750533.1 2179865 R 318167 CDS YP_750534.1 114563021 4278114 complement(2182479..2184032) 1 NC_008345.1 KEGG: ana:all3488 unknown protein; hypothetical protein 2184032 4278114 Sfri_1848 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750534.1 2182479 R 318167 CDS YP_750535.1 114563022 4278115 2184907..2186667 1 NC_008345.1 PFAM: protein of unknown function UPF0061; KEGG: pmt:PMT1392 conserved hypotheical protein; hypothetical protein 2186667 4278115 Sfri_1849 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750535.1 2184907 D 318167 CDS YP_750536.1 114563023 4278116 2186928..2187578 1 NC_008345.1 KEGG: ilo:IL0571 hypothetical protein; hypothetical protein 2187578 4278116 Sfri_1850 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750536.1 2186928 D 318167 CDS YP_750537.1 114563024 4278117 2187571..2188389 1 NC_008345.1 KEGG: pha:PSHAa1929 hypothetical protein; hypothetical protein 2188389 4278117 Sfri_1851 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750537.1 2187571 D 318167 CDS YP_750538.1 114563025 4278118 2189032..2189778 1 NC_008345.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: son:SO1520 hypothetical protein; hypothetical protein 2189778 4278118 Sfri_1852 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750538.1 2189032 D 318167 CDS YP_750539.1 114563026 4278313 2189787..2191175 1 NC_008345.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1519 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 2191175 4278313 Sfri_1853 Shewanella frigidimarina NCIMB 400 4Fe-4S ferredoxin YP_750539.1 2189787 D 318167 CDS YP_750540.1 114563027 4278314 2191177..2191740 1 NC_008345.1 PFAM: protein of unknown function DUF162; KEGG: son:SO1518 hypothetical protein; hypothetical protein 2191740 4278314 Sfri_1854 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750540.1 2191177 D 318167 CDS YP_750541.1 114563028 4278315 complement(2192051..2192950) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3460 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 2192950 4278315 Sfri_1855 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_750541.1 2192051 R 318167 CDS YP_750542.1 114563029 4278316 2193304..2193948 1 NC_008345.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pha:PSHAa1776 transcriptional regulator; transcriptional regulator, GntR family protein 2193948 4278316 Sfri_1856 Shewanella frigidimarina NCIMB 400 transcriptional regulator, GntR family protein YP_750542.1 2193304 D 318167 CDS YP_750543.1 114563030 4278317 2194005..2194883 1 NC_008345.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 2194883 prpB 4278317 prpB Shewanella frigidimarina NCIMB 400 2-methylisocitrate lyase YP_750543.1 2194005 D 318167 CDS YP_750544.1 114563031 4278318 2194988..2196112 1 NC_008345.1 KEGG: cps:CPS_2821 putative 2-methylcitrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; 2-methylcitrate synthase/citrate synthase II 2196112 4278318 Sfri_1858 Shewanella frigidimarina NCIMB 400 2-methylcitrate synthase/citrate synthase II YP_750544.1 2194988 D 318167 CDS YP_750545.1 114563032 4278319 2196179..2198791 1 NC_008345.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2198791 4278319 Sfri_1859 Shewanella frigidimarina NCIMB 400 aconitate hydratase YP_750545.1 2196179 D 318167 CDS YP_750546.1 114563033 4278320 2198881..2200050 1 NC_008345.1 TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: pfo:Pfl_1767 protein of unknown function DUF453; putative AcnD-accessory protein PrpF 2200050 4278320 Sfri_1860 Shewanella frigidimarina NCIMB 400 putative AcnD-accessory protein PrpF YP_750546.1 2198881 D 318167 CDS YP_750547.1 114563034 4278321 2200520..2202679 1 NC_008345.1 PFAM: sodium/hydrogen exchanger; KEGG: son:SO2537 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger 2202679 4278321 Sfri_1861 Shewanella frigidimarina NCIMB 400 sodium/hydrogen exchanger YP_750547.1 2200520 D 318167 CDS YP_750548.1 114563035 4278322 complement(2202841..2203308) 1 NC_008345.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2203308 bcp 4278322 bcp Shewanella frigidimarina NCIMB 400 thioredoxin-dependent thiol peroxidase YP_750548.1 2202841 R 318167 CDS YP_750549.1 114563036 4278323 complement(2203395..2203931) 1 NC_008345.1 KEGG: son:SO1878 glycine cleavage system transcriptional repressor, putative; glycine cleavage system transcriptional repressor 2203931 4278323 Sfri_1863 Shewanella frigidimarina NCIMB 400 glycine cleavage system transcriptional repressor YP_750549.1 2203395 R 318167 CDS YP_750550.1 114563037 4278324 2204215..2205099 1 NC_008345.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2205099 4278324 Sfri_1864 Shewanella frigidimarina NCIMB 400 dihydrodipicolinate synthase YP_750550.1 2204215 D 318167 CDS YP_750551.1 114563038 4278325 2205104..2206201 1 NC_008345.1 PFAM: NlpBDapX family lipoprotein; KEGG: son:SO1880 lipoprotein-34 NlpB; NlpB/DapX family lipoprotein 2206201 4278325 Sfri_1865 Shewanella frigidimarina NCIMB 400 NlpB/DapX family lipoprotein YP_750551.1 2205104 D 318167 CDS YP_750552.1 114563039 4278326 2206663..2207820 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1881 HlyD family-related protein; RND family efflux transporter MFP subunit 2207820 4278326 Sfri_1866 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_750552.1 2206663 D 318167 CDS YP_750553.1 114563040 4278327 complement(2211147..2211575) 1 NC_008345.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: bur:Bcep18194_A4725 phenylacetic acid degradation-related protein; hypothetical protein 2211575 4278327 Sfri_1868 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750553.1 2211147 R 318167 CDS YP_750554.1 114563041 4278328 complement(2211665..2214112) 1 NC_008345.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2214112 fadE 4278328 fadE Shewanella frigidimarina NCIMB 400 acyl-CoA dehydrogenase YP_750554.1 2211665 R 318167 CDS YP_750555.1 114563042 4278329 2214361..2215137 1 NC_008345.1 PFAM: glutamine amidotransferase, class-II; KEGG: son:SO2535 hypothetical amidotransferase; glutamine amidotransferase, class-II 2215137 4278329 Sfri_1870 Shewanella frigidimarina NCIMB 400 glutamine amidotransferase, class-II YP_750555.1 2214361 D 318167 CDS YP_750556.1 114563043 4278330 complement(2215123..2216082) 1 NC_008345.1 KEGG: son:SO2533 hypothetical protein; hypothetical protein 2216082 4278330 Sfri_1871 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750556.1 2215123 R 318167 CDS YP_750557.1 114563044 4278331 complement(2216158..2216574) 1 NC_008345.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: son:SO2532 methylated-DNA--protein-cysteine methyltransferase, putative; methylated-DNA--protein-cysteine methyltransferase 2216574 4278331 Sfri_1872 Shewanella frigidimarina NCIMB 400 methylated-DNA--protein-cysteine methyltransferase YP_750557.1 2216158 R 318167 CDS YP_750558.1 114563045 4278332 complement(2216619..2217302) 1 NC_008345.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: son:SO2447 channel protein, hemolysin III family subfamily; hemolysin III family channel protein 2217302 4278332 Sfri_1873 Shewanella frigidimarina NCIMB 400 hemolysin III family channel protein YP_750558.1 2216619 R 318167 CDS YP_750559.1 114563046 4278333 2217557..2218195 1 NC_008345.1 hypothetical protein 2218195 4278333 Sfri_1874 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750559.1 2217557 D 318167 CDS YP_750560.1 114563047 4278334 complement(2218267..2218896) 1 NC_008345.1 PFAM: Rhomboid family protein; KEGG: son:SO2504 hypothetical protein; rhomboid family protein 2218896 4278334 Sfri_1875 Shewanella frigidimarina NCIMB 400 rhomboid family protein YP_750560.1 2218267 R 318167 CDS YP_750561.1 114563048 4278335 complement(2219082..2219789) 1 NC_008345.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: son:SO2503 ExsB protein; exsB protein 2219789 4278335 Sfri_1876 Shewanella frigidimarina NCIMB 400 exsB protein YP_750561.1 2219082 R 318167 CDS YP_750562.1 114563049 4278336 2220000..2220668 1 NC_008345.1 KEGG: son:SO2501 radical activating enzyme; radical activating enzyme 2220668 4278336 Sfri_1877 Shewanella frigidimarina NCIMB 400 radical activating enzyme YP_750562.1 2220000 D 318167 CDS YP_750563.1 114563050 4278337 complement(2220763..2221824) 1 NC_008345.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: vch:VC1061 cysteine synthase/cystathionine beta-synthase family protein; pyridoxal-5'-phosphate-dependent protein subunit beta 2221824 4278337 Sfri_1878 Shewanella frigidimarina NCIMB 400 pyridoxal-5'-phosphate-dependent protein subunit beta YP_750563.1 2220763 R 318167 CDS YP_750564.1 114563051 4278338 2222670..2223158 1 NC_008345.1 KEGG: son:SO2500 hypothetical protein; hypothetical protein 2223158 4278338 Sfri_1879 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750564.1 2222670 D 318167 CDS YP_750565.1 114563052 4278339 2223887..2224846 1 NC_008345.1 KEGG: hch:HCH_01260 hypothetical protein; hypothetical protein 2224846 4278339 Sfri_1880 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750565.1 2223887 D 318167 CDS YP_750566.1 114563053 4278340 2225555..2225842 1 NC_008345.1 KEGG: son:SO2499 hypothetical protein; hypothetical protein 2225842 4278340 Sfri_1882 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750566.1 2225555 D 318167 CDS YP_750567.1 114563054 4278341 2226182..2228386 1 NC_008345.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO2498 sensory box protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2228386 4278341 Sfri_1883 Shewanella frigidimarina NCIMB 400 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_750567.1 2226182 D 318167 CDS YP_750568.1 114563055 4278342 complement(2228584..2229075) 1 NC_008345.1 PFAM: SEC-C motif domain protein; KEGG: son:SO2497 conserved hypothetical protein; SecC motif-containing protein 2229075 4278342 Sfri_1884 Shewanella frigidimarina NCIMB 400 SecC motif-containing protein YP_750568.1 2228584 R 318167 CDS YP_750569.1 114563056 4278343 complement(2229080..2229640) 1 NC_008345.1 KEGG: son:SO2495.1 hypothetical protein; hypothetical protein 2229640 4278343 Sfri_1885 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750569.1 2229080 R 318167 CDS YP_750570.1 114563057 4278344 2229793..2230395 1 NC_008345.1 PFAM: Smr protein/MutS2; KEGG: son:SO2495 Smr domain protein; Smr protein/MutS2 2230395 4278344 Sfri_1886 Shewanella frigidimarina NCIMB 400 Smr protein/MutS2 YP_750570.1 2229793 D 318167 CDS YP_750571.1 114563058 4278345 complement(2230607..2232448) 1 NC_008345.1 PFAM: peptidase M2, peptidyl-dipeptidase A; KEGG: son:SO2494 zinc-dependent metallopeptidase; peptidyl-dipeptidase A 2232448 4278345 Sfri_1887 Shewanella frigidimarina NCIMB 400 peptidyl-dipeptidase A YP_750571.1 2230607 R 318167 CDS YP_750572.1 114563059 4278346 2232644..2233285 1 NC_008345.1 PFAM: regulatory protein, TetR; KEGG: son:SO2493 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein 2233285 4278346 Sfri_1888 Shewanella frigidimarina NCIMB 400 transcriptional regulator, TetR family protein YP_750572.1 2232644 D 318167 CDS YP_750573.1 114563060 4278347 2233297..2235573 1 NC_008345.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2235573 4278347 Sfri_1889 Shewanella frigidimarina NCIMB 400 acyl-CoA dehydrogenase YP_750573.1 2233297 D 318167 CDS YP_750574.1 114563061 4278802 complement(2235850..2237289) 1 NC_008345.1 PFAM: pyruvate kinase; KEGG: son:SO2491 pyruvate kinase II; pyruvate kinase 2237289 4278802 Sfri_1890 Shewanella frigidimarina NCIMB 400 pyruvate kinase YP_750574.1 2235850 R 318167 CDS YP_750575.1 114563062 4278803 complement(2237719..2238573) 1 NC_008345.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2238573 4278803 Sfri_1891 Shewanella frigidimarina NCIMB 400 DNA-binding transcriptional regulator HexR YP_750575.1 2237719 R 318167 CDS YP_750576.1 114563063 4278804 2238911..2240380 1 NC_008345.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2240380 4278804 Sfri_1892 Shewanella frigidimarina NCIMB 400 glucose-6-phosphate 1-dehydrogenase YP_750576.1 2238911 D 318167 CDS YP_750577.1 114563064 4278805 2240390..2241088 1 NC_008345.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: son:SO2488 6-phosphogluconolactonase; 6-phosphogluconolactonase 2241088 4278805 Sfri_1893 Shewanella frigidimarina NCIMB 400 6-phosphogluconolactonase YP_750577.1 2240390 D 318167 CDS YP_750578.1 114563065 4278806 2241100..2242926 1 NC_008345.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2242926 4278806 Sfri_1894 Shewanella frigidimarina NCIMB 400 phosphogluconate dehydratase YP_750578.1 2241100 D 318167 CDS YP_750579.1 114563066 4278807 2242948..2243592 1 NC_008345.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 2243592 4278807 Sfri_1895 Shewanella frigidimarina NCIMB 400 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_750579.1 2242948 D 318167 CDS YP_750580.1 114563067 4278808 2243860..2244372 1 NC_008345.1 KEGG: son:SO4492 hypothetical protein; hypothetical protein 2244372 4278808 Sfri_1896 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750580.1 2243860 D 318167 CDS YP_750581.1 114563068 4278809 2244642..2245337 1 NC_008345.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: dps:DP1920 hypothetical protein; aspartate racemase 2245337 4278809 Sfri_1897 Shewanella frigidimarina NCIMB 400 aspartate racemase YP_750581.1 2244642 D 318167 CDS YP_750582.1 114563069 4278810 complement(2245498..2248095) 1 NC_008345.1 PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: son:SO2136 aldehyde-alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2248095 4278810 Sfri_1898 Shewanella frigidimarina NCIMB 400 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_750582.1 2245498 R 318167 CDS YP_750583.1 114563070 4278811 2248823..2249524 1 NC_008345.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pha:PSHAb0206 putative unknown enzyme; HAD family hydrolase 2249524 4278811 Sfri_1899 Shewanella frigidimarina NCIMB 400 HAD family hydrolase YP_750583.1 2248823 D 318167 CDS YP_750584.1 114563071 4278812 2249526..2250488 1 NC_008345.1 PFAM: putative sugar-binding domain protein; KEGG: pha:PSHAa1504 transcriptional regulator; DeoR family transcriptional regulator 2250488 4278812 Sfri_1900 Shewanella frigidimarina NCIMB 400 DeoR family transcriptional regulator YP_750584.1 2249526 D 318167 CDS YP_750585.1 114563072 4278813 2250689..2252425 1 NC_008345.1 KEGG: pha:PSHAb0207 putative nucleoside transport protein; putative nucleoside transport protein 2252425 4278813 Sfri_1901 Shewanella frigidimarina NCIMB 400 putative nucleoside transport protein YP_750585.1 2250689 D 318167 CDS YP_750586.1 114563073 4278814 complement(2252400..2253593) 1 NC_008345.1 PFAM: transposase, IS4 family protein; KEGG: ret:RHE_CH01332 probable insertion sequence transposase protein, IS10; transposase, IS4 family protein 2253593 4278814 Sfri_1902 Shewanella frigidimarina NCIMB 400 transposase, IS4 family protein YP_750586.1 2252400 R 318167 CDS YP_750587.1 114563074 4278815 2253894..2255414 1 NC_008345.1 PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase rossman, N-terminal domain protein; KEGG: pha:PSHAb0208 D-mannonate oxidoreductase; mannitol dehydrogenase domain-containing protein 2255414 4278815 Sfri_1903 Shewanella frigidimarina NCIMB 400 mannitol dehydrogenase domain-containing protein YP_750587.1 2253894 D 318167 CDS YP_750588.1 114563075 4278816 2255420..2256340 1 NC_008345.1 PFAM: PfkB domain protein; KEGG: pha:PSHAb0209 putative carbohydrate kinase; ribokinase-like domain-containing protein 2256340 4278816 Sfri_1904 Shewanella frigidimarina NCIMB 400 ribokinase-like domain-containing protein YP_750588.1 2255420 D 318167 CDS YP_750589.1 114563076 4278817 complement(2256483..2257859) 1 NC_008345.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2257859 4278817 Sfri_1905 Shewanella frigidimarina NCIMB 400 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_750589.1 2256483 R 318167 CDS YP_750590.1 114563077 4278818 complement(2257869..2258456) 1 NC_008345.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO2484 hypothetical protein; hypothetical protein 2258456 4278818 Sfri_1906 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750590.1 2257869 R 318167 CDS YP_750591.1 114563078 4278819 complement(2258569..2259783) 1 NC_008345.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2259783 4278819 Sfri_1907 Shewanella frigidimarina NCIMB 400 aminotransferase AlaT YP_750591.1 2258569 R 318167 CDS YP_750592.1 114563079 4278820 complement(2260064..2260624) 1 NC_008345.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2260624 4278820 Sfri_1908 Shewanella frigidimarina NCIMB 400 elongation factor P YP_750592.1 2260064 R 318167 CDS YP_750593.1 114563080 4278821 complement(2260674..2261861) 1 NC_008345.1 KEGG: son:SO2329 hypothetical protein; hypothetical protein 2261861 4278821 Sfri_1909 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750593.1 2260674 R 318167 CDS YP_750594.1 114563081 4278822 complement(2261955..2262482) 1 NC_008345.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 2262482 4278822 Sfri_1910 Shewanella frigidimarina NCIMB 400 flavodoxin FldA YP_750594.1 2261955 R 318167 CDS YP_750595.1 114563082 4278823 complement(2262533..2262805) 1 NC_008345.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: son:SO2331 hypothetical protein; LexA regulated protein 2262805 4278823 Sfri_1911 Shewanella frigidimarina NCIMB 400 LexA regulated protein YP_750595.1 2262533 R 318167 CDS YP_750596.1 114563083 4278824 complement(2262814..2263035) 1 NC_008345.1 KEGG: son:SO2332 hypothetical protein; hypothetical protein 2263035 4278824 Sfri_1912 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750596.1 2262814 R 318167 CDS YP_750597.1 114563084 4278825 complement(2263134..2263907) 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: son:SO2333 hydrolase, alpha/beta fold family; alpha/beta hydrolase 2263907 4278825 Sfri_1913 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase YP_750597.1 2263134 R 318167 CDS YP_750598.1 114563085 4278826 2264213..2264839 1 NC_008345.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 2264839 4278826 Sfri_1914 Shewanella frigidimarina NCIMB 400 replication initiation regulator SeqA YP_750598.1 2264213 D 318167 CDS YP_750599.1 114563086 4278827 2264894..2266537 1 NC_008345.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2266537 4278827 Sfri_1915 Shewanella frigidimarina NCIMB 400 phosphoglucomutase YP_750599.1 2264894 D 318167 CDS YP_750600.1 114563087 4278828 2266708..2267115 1 NC_008345.1 KEGG: pha:PSHAa2581 hypothetical protein; hypothetical protein 2267115 4278828 Sfri_1916 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750600.1 2266708 D 318167 CDS YP_750601.1 114563088 4278829 complement(2267196..2269412) 1 NC_008345.1 KEGG: son:SO4405 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 2269412 4278829 Sfri_1917 Shewanella frigidimarina NCIMB 400 catalase/peroxidase HPI YP_750601.1 2267196 R 318167 CDS YP_750602.1 114563089 4278830 complement(2269609..2271171) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: vpa:VPA0609 hypothetical protein; diguanylate cyclase/phosphodiesterase 2271171 4278830 Sfri_1918 Shewanella frigidimarina NCIMB 400 diguanylate cyclase/phosphodiesterase YP_750602.1 2269609 R 318167 CDS YP_750603.1 114563090 4278831 complement(2271604..2273016) 1 NC_008345.1 KEGG: dar:Daro_1852 hypothetical protein; hypothetical protein 2273016 4278831 Sfri_1919 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750603.1 2271604 R 318167 CDS YP_750604.1 114563091 4278832 complement(2273286..2274950) 1 NC_008345.1 KEGG: son:SO2394 penicillin-binding protein 4; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 2274950 4278832 Sfri_1920 Shewanella frigidimarina NCIMB 400 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_750604.1 2273286 R 318167 CDS YP_750605.1 114563092 4278833 2275562..2276902 1 NC_008345.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2276902 pssA 4278833 pssA Shewanella frigidimarina NCIMB 400 phosphatidylserine synthase YP_750605.1 2275562 D 318167 CDS YP_750606.1 114563093 4278834 2276974..2277777 1 NC_008345.1 PFAM: DTW domain containing protein; KEGG: son:SO2387 conserved hypothetical protein; DTW domain-containing protein 2277777 4278834 Sfri_1922 Shewanella frigidimarina NCIMB 400 DTW domain-containing protein YP_750606.1 2276974 D 318167 CDS YP_750607.1 114563094 4278835 2277928..2278287 1 NC_008345.1 KEGG: son:SO2381 hypothetical protein; hypothetical protein 2278287 4278835 Sfri_1923 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750607.1 2277928 D 318167 CDS YP_750608.1 114563095 4278836 2278417..2280426 1 NC_008345.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2380 RecQ domain protein; ATP-dependent DNA helicase, RecQ family protein 2280426 4278836 Sfri_1924 Shewanella frigidimarina NCIMB 400 ATP-dependent DNA helicase, RecQ family protein YP_750608.1 2278417 D 318167 CDS YP_750609.1 114563096 4278837 2280423..2280698 1 NC_008345.1 KEGG: vfi:VF0709 hypothetical protein; hypothetical protein 2280698 4278837 Sfri_1925 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750609.1 2280423 D 318167 CDS YP_750610.1 114563097 4278838 complement(2281014..2281580) 1 NC_008345.1 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2281580 4278838 Sfri_1926 Shewanella frigidimarina NCIMB 400 ecotin YP_750610.1 2281014 R 318167 CDS YP_750611.1 114563098 4278839 2281991..2283013 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2049 GGDEF family protein; diguanylate cyclase 2283013 4278839 Sfri_1927 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_750611.1 2281991 D 318167 CDS YP_750612.1 114563099 4278840 complement(2283178..2285880) 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: son:SO2116 acetyltransferase, GNAT family; CoA-binding domain-containing protein 2285880 4278840 Sfri_1928 Shewanella frigidimarina NCIMB 400 CoA-binding domain-containing protein YP_750612.1 2283178 R 318167 CDS YP_750613.1 114563100 4278841 complement(2286144..2289329) 1 NC_008345.1 PFAM: acriflavin resistance protein; KEGG: cps:CPS_4483 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 2289329 4278841 Sfri_1929 Shewanella frigidimarina NCIMB 400 acriflavin resistance protein YP_750613.1 2286144 R 318167 CDS YP_750614.1 114563101 4278842 complement(2289335..2290522) 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cps:CPS_4484 efflux transporter, RND family, MFP subunit subfamily; RND family efflux transporter MFP subunit 2290522 4278842 Sfri_1930 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_750614.1 2289335 R 318167 CDS YP_750615.1 114563102 4278843 2290702..2291262 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_0919 hypothetical protein; N-acetyltransferase GCN5 2291262 4278843 Sfri_1931 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_750615.1 2290702 D 318167 CDS YP_750616.1 114563103 4278844 complement(2291327..2292280) 1 NC_008345.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO2303 thioredoxin reductase; thioredoxin reductase 2292280 4278844 Sfri_1932 Shewanella frigidimarina NCIMB 400 thioredoxin reductase YP_750616.1 2291327 R 318167 CDS YP_750617.1 114563104 4278845 complement(2292482..2292961) 1 NC_008345.1 KEGG: son:SO2337 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 2292961 4278845 Sfri_1933 Shewanella frigidimarina NCIMB 400 peptide methionine sulfoxide reductase YP_750617.1 2292482 R 318167 CDS YP_750618.1 114563105 4278846 2293183..2294211 1 NC_008345.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 2294211 4278846 Sfri_1934 Shewanella frigidimarina NCIMB 400 succinylglutamate desuccinylase YP_750618.1 2293183 D 318167 CDS YP_750619.1 114563106 4278847 2294368..2295546 1 NC_008345.1 PFAM: dehydrogenase, E1 component; KEGG: son:SO2339 alpha keto acid dehydrogenase complex, E1 component, alpha subunit; 3-methyl-2-oxobutanoate dehydrogenase 2295546 4278847 Sfri_1935 Shewanella frigidimarina NCIMB 400 3-methyl-2-oxobutanoate dehydrogenase YP_750619.1 2294368 D 318167 CDS YP_750620.1 114563107 4278848 2295550..2296527 1 NC_008345.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: son:SO2340 alpha keto acid dehydrogenase complex, E1 component, beta subunit; transketolase, central region 2296527 4278848 Sfri_1936 Shewanella frigidimarina NCIMB 400 transketolase, central region YP_750620.1 2295550 D 318167 CDS YP_750621.1 114563108 4278849 2296537..2298159 1 NC_008345.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: son:SO2341 alpha keto acid dehydrogenase complex, E2 component; dihydrolipoamide acetyltransferase 2298159 4278849 Sfri_1937 Shewanella frigidimarina NCIMB 400 dihydrolipoamide acetyltransferase YP_750621.1 2296537 D 318167 CDS YP_750622.1 114563109 4278850 2298262..2299329 1 NC_008345.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2299329 4278850 Sfri_1938 Shewanella frigidimarina NCIMB 400 quinolinate synthetase YP_750622.1 2298262 D 318167 CDS YP_750623.1 114563110 4278851 complement(2299505..2301421) 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4053 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2301421 4278851 Sfri_1939 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_750623.1 2299505 R 318167 CDS YP_750624.1 114563111 4278852 complement(2302010..2303020) 1 NC_008345.1 KEGG: son:SO2345 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 2303020 4278852 Sfri_1940 Shewanella frigidimarina NCIMB 400 glyceraldehyde-3-phosphate dehydrogenase, type I YP_750624.1 2302010 R 318167 CDS YP_750625.1 114563112 4278853 complement(2303251..2304081) 1 NC_008345.1 KEGG: son:SO2346 hypothetical protein; hypothetical protein 2304081 4278853 Sfri_1941 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750625.1 2303251 R 318167 CDS YP_750626.1 114563113 4278854 2304282..2305718 1 NC_008345.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 2305718 4278854 Sfri_1942 Shewanella frigidimarina NCIMB 400 glyceraldehyde-3-phosphate dehydrogenase YP_750626.1 2304282 D 318167 CDS YP_750627.1 114563114 4278855 complement(2306879..2307364) 1 NC_008345.1 PFAM: regulatory protein, MarR; KEGG: cps:CPS_1337 transcriptional regulator, MarR family; transcriptional regulator, MarR family protein 2307364 4278855 Sfri_1943 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MarR family protein YP_750627.1 2306879 R 318167 CDS YP_750628.1 114563115 4278856 complement(2307490..2308197) 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; KEGG: cps:CPS_4008 hypothetical protein; hypothetical protein 2308197 4278856 Sfri_1944 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750628.1 2307490 R 318167 CDS YP_750629.1 114563116 4278857 complement(2308225..2309442) 1 NC_008345.1 KEGG: cps:CPS_1335 putative transporter, BCCT family protein; putative transporter, BCCT family protein 2309442 4278857 Sfri_1945 Shewanella frigidimarina NCIMB 400 putative transporter, BCCT family protein YP_750629.1 2308225 R 318167 CDS YP_750630.1 114563117 4278858 complement(2309678..2311360) 1 NC_008345.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 2311360 4278858 Sfri_1946 Shewanella frigidimarina NCIMB 400 choline dehydrogenase YP_750630.1 2309678 R 318167 CDS YP_750631.1 114563118 4278859 complement(2311375..2312841) 1 NC_008345.1 catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 2312841 4278859 Sfri_1947 Shewanella frigidimarina NCIMB 400 betaine aldehyde dehydrogenase YP_750631.1 2311375 R 318167 CDS YP_750632.1 114563119 4278860 complement(2312841..2313437) 1 NC_008345.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 2313437 4278860 Sfri_1948 Shewanella frigidimarina NCIMB 400 transcriptional regulator BetI YP_750632.1 2312841 R 318167 CDS YP_750633.1 114563120 4278861 2314169..2314375 1 NC_008345.1 KEGG: cps:CPS_2680 hypothetical protein; hypothetical protein 2314375 4278861 Sfri_1949 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750633.1 2314169 D 318167 CDS YP_750634.1 114563121 4278862 2315241..2315834 1 NC_008345.1 PFAM: phage integrase family protein; KEGG: cps:CPS_2062 site-specific recombinase, phage integrase family; phage integrase family protein 2315834 4278862 Sfri_1950 Shewanella frigidimarina NCIMB 400 phage integrase family protein YP_750634.1 2315241 D 318167 CDS YP_750635.1 114563122 4278863 2315997..2317100 1 NC_008345.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: vvy:VV0273 hypothetical protein; helix-turn-helix domain-containing protein 2317100 4278863 Sfri_1951 Shewanella frigidimarina NCIMB 400 helix-turn-helix domain-containing protein YP_750635.1 2315997 D 318167 CDS YP_750636.1 114563123 4278864 2317081..2317575 1 NC_008345.1 KEGG: vvy:VV0274 hypothetical protein; hypothetical protein 2317575 4278864 Sfri_1952 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750636.1 2317081 D 318167 CDS YP_750637.1 114563124 4278865 2317631..2319202 1 NC_008345.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: plu:plu4319 type I site-specific deoxyribonuclease HsdM; type I restriction-modification system, M subunit 2319202 4278865 Sfri_1953 Shewanella frigidimarina NCIMB 400 type I restriction-modification system, M subunit YP_750637.1 2317631 D 318167 CDS YP_750638.1 114563125 4278866 2319199..2320419 1 NC_008345.1 PFAM: restriction modification system DNA specificity domain; KEGG: hit:NTHI0315 putative type I restriction-modification system specificity protein; restriction modification system DNA specificity subunit 2320419 4278866 Sfri_1954 Shewanella frigidimarina NCIMB 400 restriction modification system DNA specificity subunit YP_750638.1 2319199 D 318167 CDS YP_750639.1 114563126 4278867 2320508..2321509 1 NC_008345.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: tde:TDE2641 Fic family protein; filamentation induced by cAMP protein fic 2321509 4278867 Sfri_1955 Shewanella frigidimarina NCIMB 400 filamentation induced by cAMP protein fic YP_750639.1 2320508 D 318167 CDS YP_750640.1 114563127 4278868 2321573..2324686 1 NC_008345.1 KEGG: plu:plu4322 type I site-specific deoxyribonuclease HsdR; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain protein; type I site-specific deoxyribonuclease, HsdR family protein 2324686 4278868 Sfri_1956 Shewanella frigidimarina NCIMB 400 type I site-specific deoxyribonuclease, HsdR family protein YP_750640.1 2321573 D 318167 CDS YP_750641.1 114563128 4278869 2325190..2326515 1 NC_008345.1 hypothetical protein 2326515 4278869 Sfri_1957 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750641.1 2325190 D 318167 CDS YP_750642.1 114563129 4278870 complement(2326702..2328771) 1 NC_008345.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: cps:CPS_1440 neutral zinc metallopeptidase, M13 family; endothelin-converting protein 1 2328771 4278870 Sfri_1958 Shewanella frigidimarina NCIMB 400 endothelin-converting protein 1 YP_750642.1 2326702 R 318167 CDS YP_750643.1 114563130 4278871 complement(2329255..2329854) 1 NC_008345.1 PFAM: protein of unknown function DUF330; KEGG: mca:MCA0364 lipoprotein, putative; hypothetical protein 2329854 4278871 Sfri_1959 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750643.1 2329255 R 318167 CDS YP_750644.1 114563131 4278872 complement(2329859..2330842) 1 NC_008345.1 PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_1983 putative paraquat-inducible protein B; hypothetical protein 2330842 4278872 Sfri_1960 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750644.1 2329859 R 318167 CDS YP_750645.1 114563132 4278873 complement(2330839..2331603) 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1984 ATPase; ABC transporter 2331603 4278873 Sfri_1961 Shewanella frigidimarina NCIMB 400 ABC transporter YP_750645.1 2330839 R 318167 CDS YP_750646.1 114563133 4278874 complement(2331606..2332718) 1 NC_008345.1 PFAM: protein of unknown function DUF140; KEGG: dde:Dde_1985 ABC transporter permease protein; hypothetical protein 2332718 4278874 Sfri_1962 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750646.1 2331606 R 318167 CDS YP_750647.1 114563134 4278875 2333041..2333454 1 NC_008345.1 PFAM: peptidase S24, S26A and S26B; KEGG: son:SOA0013 umuD protein; putative prophage repressor 2333454 4278875 Sfri_1963 Shewanella frigidimarina NCIMB 400 putative prophage repressor YP_750647.1 2333041 D 318167 CDS YP_750648.1 114563135 4278876 2333461..2334717 1 NC_008345.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: son:SOA0012 umuC protein; DNA-directed DNA polymerase 2334717 4278876 Sfri_1964 Shewanella frigidimarina NCIMB 400 DNA-directed DNA polymerase YP_750648.1 2333461 D 318167 CDS YP_750649.1 114563136 4278877 2334858..2335235 1 NC_008345.1 hypothetical protein 2335235 4278877 Sfri_1965 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750649.1 2334858 D 318167 CDS YP_750650.1 114563137 4278878 2335339..2335773 1 NC_008345.1 KEGG: son:SO4593 hypothetical protein; hypothetical protein 2335773 4278878 Sfri_1966 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750650.1 2335339 D 318167 CDS YP_750651.1 114563138 4278879 2335886..2336317 1 NC_008345.1 KEGG: pha:PSHAa0302 hypothetical protein; hypothetical protein 2336317 4278879 Sfri_1967 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750651.1 2335886 D 318167 CDS YP_750652.1 114563139 4278880 2336453..2336968 1 NC_008345.1 PFAM: protein of unknown function DUF411; KEGG: par:Psyc_1592 hypothetical protein; hypothetical protein 2336968 4278880 Sfri_1968 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750652.1 2336453 D 318167 CDS YP_750653.1 114563140 4278881 2336965..2338938 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: ppu:PP5380 copper resistance protein A; copper-resistance protein, CopA family protein 2338938 4278881 Sfri_1969 Shewanella frigidimarina NCIMB 400 copper-resistance protein, CopA family protein YP_750653.1 2336965 D 318167 CDS YP_750654.1 114563141 4278882 2338950..2339663 1 NC_008345.1 PFAM: copper resistance B precursor; KEGG: tbd:Tbd_1325 probable copper resistance protein B; copper resistance B precursor 2339663 4278882 Sfri_1970 Shewanella frigidimarina NCIMB 400 copper resistance B precursor YP_750654.1 2338950 D 318167 CDS YP_750655.1 114563142 4278883 2339779..2340201 1 NC_008345.1 PFAM: copper resistance protein CopC; KEGG: pha:PSHAb0009 putative copper resistance (CopC-like); copper resistance protein CopC 2340201 4278883 Sfri_1971 Shewanella frigidimarina NCIMB 400 copper resistance protein CopC YP_750655.1 2339779 D 318167 CDS YP_750656.1 114563143 4278884 2340216..2341136 1 NC_008345.1 PFAM: copper resistance D domain protein; KEGG: pha:PSHAb0008 putative copper export protein; copper resistance D domain-containing protein 2341136 4278884 Sfri_1972 Shewanella frigidimarina NCIMB 400 copper resistance D domain-containing protein YP_750656.1 2340216 D 318167 CDS YP_750657.1 114563144 4278885 2341212..2341655 1 NC_008345.1 KEGG: pha:PSHAb0007 putative orphan protein; putative orphan protein 2341655 4278885 Sfri_1973 Shewanella frigidimarina NCIMB 400 putative orphan protein YP_750657.1 2341212 D 318167 CDS YP_750658.1 114563145 4278886 2342040..2342258 1 NC_008345.1 KEGG: ppr:PBPRB1405 putative DNA-binding protein; putative DNA-binding protein 2342258 4278886 Sfri_1974 Shewanella frigidimarina NCIMB 400 putative DNA-binding protein YP_750658.1 2342040 D 318167 CDS YP_750659.1 114563146 4278887 2342255..2342803 1 NC_008345.1 KEGG: vfi:VF1433 hypothetical protein; hypothetical protein 2342803 4278887 Sfri_1975 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750659.1 2342255 D 318167 CDS YP_750660.1 114563147 4278888 complement(2342841..2344157) 1 NC_008345.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: cps:CPS_1875 sigma-54 dependent transcriptional regulator; sigma54 specific transcriptional regulator, Fis family protein 2344157 4278888 Sfri_1976 Shewanella frigidimarina NCIMB 400 sigma54 specific transcriptional regulator, Fis family protein YP_750660.1 2342841 R 318167 CDS YP_750661.1 114563148 4278889 2344469..2345113 1 NC_008345.1 KEGG: cps:CPS_1881 hypothetical protein; hypothetical protein 2345113 4278889 Sfri_1977 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750661.1 2344469 D 318167 CDS YP_750662.1 114563149 4278890 2345391..2346257 1 NC_008345.1 PFAM: beta-lactamase domain protein; KEGG: pmu:PM1479 hypothetical Synechosystis sp.; beta-lactamase domain-containing protein 2346257 4278890 Sfri_1978 Shewanella frigidimarina NCIMB 400 beta-lactamase domain-containing protein YP_750662.1 2345391 D 318167 CDS YP_750663.1 114563150 4278891 complement(2346376..2346780) 1 NC_008345.1 PFAM: Rhodanese domain protein; KEGG: ilo:IL1695 rhodanese-related sulfurtransferase; rhodanese domain-containing protein 2346780 4278891 Sfri_1979 Shewanella frigidimarina NCIMB 400 rhodanese domain-containing protein YP_750663.1 2346376 R 318167 CDS YP_750664.1 114563151 4278892 complement(2346796..2347548) 1 NC_008345.1 PFAM: protein of unknown function DUF81; KEGG: ttj:TTHA0835 conserved hypothetical membrane protein; hypothetical protein 2347548 4278892 Sfri_1980 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750664.1 2346796 R 318167 CDS YP_750665.1 114563152 4278893 complement(2347563..2348432) 1 NC_008345.1 PFAM: beta-lactamase domain protein; KEGG: ilo:IL1442 Zn-dependent hydrolase, glyoxylase family; beta-lactamase domain-containing protein 2348432 4278893 Sfri_1981 Shewanella frigidimarina NCIMB 400 beta-lactamase domain-containing protein YP_750665.1 2347563 R 318167 CDS YP_750666.1 114563153 4278894 complement(2348489..2349130) 1 NC_008345.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rpb:RPB_4601 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; peroxidase 2349130 4278894 Sfri_1982 Shewanella frigidimarina NCIMB 400 peroxidase YP_750666.1 2348489 R 318167 CDS YP_750667.1 114563154 4278895 2349635..2350555 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2409 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 2350555 4278895 Sfri_1983 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_750667.1 2349635 D 318167 CDS YP_750668.1 114563155 4278896 complement(2350740..2351702) 1 NC_008345.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: son:SO2408 radical activating enzyme; radical SAM domain-containing protein 2351702 4278896 Sfri_1984 Shewanella frigidimarina NCIMB 400 radical SAM domain-containing protein YP_750668.1 2350740 R 318167 CDS YP_750669.1 114563156 4278897 complement(2351695..2353263) 1 NC_008345.1 KEGG: son:SO2407 hypothetical protein; hypothetical protein 2353263 4278897 Sfri_1985 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750669.1 2351695 R 318167 CDS YP_750670.1 114563157 4278898 complement(2353623..2354546) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tcx:Tcr_0379 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; diguanylate cyclase 2354546 4278898 Sfri_1986 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_750670.1 2353623 R 318167 CDS YP_750671.1 114563158 4278899 complement(2354543..2355349) 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: bsu:BG12442 similar to hydrolase; alpha/beta hydrolase 2355349 4278899 Sfri_1987 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase YP_750671.1 2354543 R 318167 CDS YP_750672.1 114563159 4278900 2355843..2357267 1 NC_008345.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: son:SO2564 transglycosylase, Slt family; lytic transglycosylase, catalytic 2357267 4278900 Sfri_1988 Shewanella frigidimarina NCIMB 400 lytic transglycosylase, catalytic YP_750672.1 2355843 D 318167 CDS YP_750673.1 114563160 4278901 2357583..2358332 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO4694 hypothetical protein; hypothetical protein 2358332 4278901 Sfri_1989 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750673.1 2357583 D 318167 CDS YP_750674.1 114563161 4278902 2358532..2359257 1 NC_008345.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 2359257 4278902 Sfri_1990 Shewanella frigidimarina NCIMB 400 DNA-binding transcriptional regulator TorR YP_750674.1 2358532 D 318167 CDS YP_750675.1 114563162 4278903 complement(2359247..2360320) 1 NC_008345.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 2360320 4278903 Sfri_1991 Shewanella frigidimarina NCIMB 400 TMAO reductase system periplasmic protein TorT YP_750675.1 2359247 R 318167 CDS YP_750676.1 114563163 4278904 2360439..2363438 1 NC_008345.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: son:SO1230 sensor histidine kinase/response regulator TorS; multi-sensor hybrid histidine kinase 2363438 4278904 Sfri_1992 Shewanella frigidimarina NCIMB 400 multi-sensor hybrid histidine kinase YP_750676.1 2360439 D 318167 CDS YP_750677.1 114563164 4278905 complement(2363578..2364234) 1 NC_008345.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 2364234 torD 4278905 torD Shewanella frigidimarina NCIMB 400 chaperone protein TorD YP_750677.1 2363578 R 318167 CDS YP_750678.1 114563165 4278906 complement(2364320..2366812) 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: son:SO1232 trimethylamine-N-oxide reductase; trimethylamine-N-oxide reductase TorA 2366812 4278906 Sfri_1994 Shewanella frigidimarina NCIMB 400 trimethylamine-N-oxide reductase TorA YP_750678.1 2364320 R 318167 CDS YP_750679.1 114563166 4278907 complement(2366825..2368003) 1 NC_008345.1 TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO1233 tetraheme cytochrome c; trimethylamine-N-oxide reductase c-type cytochrome TorC 2368003 4278907 Sfri_1995 Shewanella frigidimarina NCIMB 400 trimethylamine-N-oxide reductase c-type cytochrome TorC YP_750679.1 2366825 R 318167 CDS YP_750680.1 114563167 4278908 complement(2368046..2368216) 1 NC_008345.1 PFAM: periplasmic nitrate reductase NapE; KEGG: son:SO1234 warning TorE protein; periplasmic nitrate reductase NapE 2368216 4278908 Sfri_1996 Shewanella frigidimarina NCIMB 400 periplasmic nitrate reductase NapE YP_750680.1 2368046 R 318167 CDS YP_750681.1 114563168 4278909 complement(2368615..2369208) 1 NC_008345.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: son:SO4157 DNA-binding response regulator; two component transcriptional regulator, LuxR family protein 2369208 4278909 Sfri_1997 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, LuxR family protein YP_750681.1 2368615 R 318167 CDS YP_750682.1 114563169 4278910 2369410..2371263 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4155 sensor histidine kinase; histidine kinase 2371263 4278910 Sfri_1998 Shewanella frigidimarina NCIMB 400 histidine kinase YP_750682.1 2369410 D 318167 CDS YP_750683.1 114563170 4278911 2371517..2373799 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4062 polysulfide reductase, subunit A; twin-arginine translocation pathway signal 2373799 4278911 Sfri_1999 Shewanella frigidimarina NCIMB 400 twin-arginine translocation pathway signal YP_750683.1 2371517 D 318167 CDS YP_750684.1 114563171 4278912 2373828..2374400 1 NC_008345.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4061 polysulfide reductase, subunit B; 4Fe-4S ferredoxin 2374400 4278912 Sfri_2000 Shewanella frigidimarina NCIMB 400 4Fe-4S ferredoxin YP_750684.1 2373828 D 318167 CDS YP_750685.1 114563172 4278913 2374397..2375338 1 NC_008345.1 PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4060 polysulfide reductase, subunit C; polysulfide reductase NrfD 2375338 4278913 Sfri_2001 Shewanella frigidimarina NCIMB 400 polysulfide reductase NrfD YP_750685.1 2374397 D 318167 CDS YP_750686.1 114563173 4278914 2376415..2376675 1 NC_008345.1 hypothetical protein 2376675 4278914 Sfri_2002 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750686.1 2376415 D 318167 CDS YP_750687.1 114563174 4278915 2377096..2377509 1 NC_008345.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pha:PSHAa0258 regulator of nucleoside diphosphate kinase; GreA/GreB family elongation factor 2377509 4278915 Sfri_2003 Shewanella frigidimarina NCIMB 400 GreA/GreB family elongation factor YP_750687.1 2377096 D 318167 CDS YP_750688.1 114563175 4278916 2378528..2378797 1 NC_008345.1 KEGG: vfi:VF1777 hypothetical protein; hypothetical protein 2378797 4278916 Sfri_2004 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750688.1 2378528 D 318167 CDS YP_750689.1 114563176 4278917 2379032..2379571 1 NC_008345.1 hypothetical protein 2379571 4278917 Sfri_2005 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750689.1 2379032 D 318167 CDS YP_750690.1 114563177 4278918 2379907..2380155 1 NC_008345.1 PFAM: protein of unknown function DUF450; KEGG: ppr:PBPRA1804 putative type I restriction enzyme R protein; hypothetical protein 2380155 4278918 Sfri_2006 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750690.1 2379907 D 318167 CDS YP_750691.1 114563178 4278919 complement(2380574..2381881) 1 NC_008345.1 PFAM: phage integrase family protein; KEGG: son:SO2370 site-specific recombinase, phage integrase family; phage integrase family protein 2381881 4278919 Sfri_2007 Shewanella frigidimarina NCIMB 400 phage integrase family protein YP_750691.1 2380574 R 318167 CDS YP_750692.1 114563179 4278920 complement(2381961..2382248) 1 NC_008345.1 hypothetical protein 2382248 4278920 Sfri_2008 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750692.1 2381961 R 318167 CDS YP_750693.1 114563180 4278921 complement(2382688..2383140) 1 NC_008345.1 KEGG: son:SO2365 hypothetical protein; hypothetical protein 2383140 4278921 Sfri_2009 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750693.1 2382688 R 318167 CDS YP_750694.1 114563181 4278922 2383411..2384838 1 NC_008345.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2384838 4278922 Sfri_2010 Shewanella frigidimarina NCIMB 400 cbb3-type cytochrome c oxidase subunit I YP_750694.1 2383411 D 318167 CDS YP_750695.1 114563182 4278923 2384851..2385477 1 NC_008345.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2385477 4278923 Sfri_2011 Shewanella frigidimarina NCIMB 400 cbb3-type cytochrome c oxidase subunit II YP_750695.1 2384851 D 318167 CDS YP_750696.1 114563183 4278924 2385487..2385663 1 NC_008345.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: son:SO2362 cytochrome c oxidase, cbb3-type, CcoQ subunit; cbb3-type cytochrome oxidase subunit 2385663 4278924 Sfri_2012 Shewanella frigidimarina NCIMB 400 cbb3-type cytochrome oxidase subunit YP_750696.1 2385487 D 318167 CDS YP_750697.1 114563184 4278925 2385663..2386637 1 NC_008345.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: son:SO2361 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 2386637 4278925 Sfri_2013 Shewanella frigidimarina NCIMB 400 cytochrome c oxidase, cbb3-type subunit III YP_750697.1 2385663 D 318167 CDS YP_750698.1 114563185 4278926 2386754..2387233 1 NC_008345.1 KEGG: son:SO2360 hypothetical protein; hypothetical protein 2387233 4278926 Sfri_2014 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750698.1 2386754 D 318167 CDS YP_750699.1 114563186 4278927 2387291..2389684 1 NC_008345.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: son:SO2359 cation transport ATPase, E1-E2 family; heavy metal translocating P-type ATPase 2389684 4278927 Sfri_2015 Shewanella frigidimarina NCIMB 400 heavy metal translocating P-type ATPase YP_750699.1 2387291 D 318167 CDS YP_750700.1 114563187 4278928 2389681..2389995 1 NC_008345.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: son:SO2358 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein 2389995 4278928 Sfri_2016 Shewanella frigidimarina NCIMB 400 cbb3-type cytochrome oxidase maturation protein YP_750700.1 2389681 D 318167 CDS YP_750701.1 114563188 4278929 2390001..2390690 1 NC_008345.1 KEGG: son:SO2357 hypothetical protein; hypothetical protein 2390690 4278929 Sfri_2017 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750701.1 2390001 D 318167 CDS YP_750702.1 114563189 4278930 2391013..2391771 1 NC_008345.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2391771 4278930 Sfri_2018 Shewanella frigidimarina NCIMB 400 fumarate/nitrate reduction transcriptional regulator YP_750702.1 2391013 D 318167 CDS YP_750703.1 114563190 4278931 2391870..2392799 1 NC_008345.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2392799 4278931 Sfri_2019 Shewanella frigidimarina NCIMB 400 universal stress protein UspE YP_750703.1 2391870 D 318167 CDS YP_750704.1 114563191 4278932 2392890..2393828 1 NC_008345.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2393828 4278932 Sfri_2020 Shewanella frigidimarina NCIMB 400 C32 tRNA thiolase YP_750704.1 2392890 D 318167 CDS YP_750705.1 114563192 4278933 complement(2393909..2394562) 1 NC_008345.1 KEGG: son:SO2353 hypothetical protein; hypothetical protein 2394562 4278933 Sfri_2021 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750705.1 2393909 R 318167 CDS YP_750706.1 114563193 4278934 complement(2394555..2395373) 1 NC_008345.1 PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; KEGG: son:SO2352 bax protein, putative; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 2395373 4278934 Sfri_2022 Shewanella frigidimarina NCIMB 400 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase YP_750706.1 2394555 R 318167 CDS YP_750707.1 114563194 4278935 2395643..2396599 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: son:SO2351 hypothetical protein; hypothetical protein 2396599 4278935 Sfri_2023 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750707.1 2395643 D 318167 CDS YP_750708.1 114563195 4278936 complement(2396799..2397992) 1 NC_008345.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2397992 4278936 Sfri_2024 Shewanella frigidimarina NCIMB 400 aromatic amino acid aminotransferase YP_750708.1 2396799 R 318167 CDS YP_750709.1 114563196 4278937 complement(2398541..2398900) 1 NC_008345.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2398900 rplT 4278937 rplT Shewanella frigidimarina NCIMB 400 50S ribosomal protein L20 YP_750709.1 2398541 R 318167 CDS YP_750710.1 114563197 4278938 complement(2398917..2399111) 1 NC_008345.1 PFAM: ribosomal protein L35; KEGG: son:SO2301 50S ribosomal protein L35; 50S ribosomal protein L35 2399111 rpmI 4278938 rpmI Shewanella frigidimarina NCIMB 400 50S ribosomal protein L35 YP_750710.1 2398917 R 318167 CDS YP_750711.1 114563198 4278939 complement(2399195..2399530) 1 NC_008345.1 PFAM: initiation factor 3; KEGG: son:SO2300 translation initiation factor IF-3; initiation factor 3 2399530 4278939 Sfri_2027 Shewanella frigidimarina NCIMB 400 initiation factor 3 YP_750711.1 2399195 R 318167 CDS YP_750712.1 114563199 4278940 complement(2399741..2401669) 1 NC_008345.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2401669 4278940 Sfri_2028 Shewanella frigidimarina NCIMB 400 threonyl-tRNA synthetase YP_750712.1 2399741 R 318167 CDS YP_750713.1 114563200 4278941 2402163..2402363 1 NC_008345.1 KEGG: son:SO2297 hypothetical protein; hypothetical protein 2402363 4278941 Sfri_2029 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750713.1 2402163 D 318167 CDS YP_750714.1 114563201 4278942 complement(2402427..2403041) 1 NC_008345.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2403041 4278942 Sfri_2030 Shewanella frigidimarina NCIMB 400 riboflavin synthase subunit alpha YP_750714.1 2402427 R 318167 CDS YP_750715.1 114563202 4278943 2403071..2404432 1 NC_008345.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO2295 MATE efflux family protein; MATE efflux family protein 2404432 4278943 Sfri_2031 Shewanella frigidimarina NCIMB 400 MATE efflux family protein YP_750715.1 2403071 D 318167 CDS YP_750716.1 114563203 4278944 complement(2405511..2406893) 1 NC_008345.1 PFAM: aldehyde dehydrogenase; KEGG: bja:bll3998 probable succinate-semialdehyde dehydrogenase [NADP+]; aldehyde dehydrogenase 2406893 4278944 Sfri_2032 Shewanella frigidimarina NCIMB 400 aldehyde dehydrogenase YP_750716.1 2405511 R 318167 CDS YP_750717.1 114563204 4278945 complement(2407150..2408307) 1 NC_008345.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 2408307 4278945 Sfri_2033 Shewanella frigidimarina NCIMB 400 iron-containing alcohol dehydrogenase YP_750717.1 2407150 R 318167 CDS YP_750718.1 114563205 4278946 2409529..2409741 1 NC_008345.1 KEGG: pha:PSHAa1766 hypothetical protein; hypothetical protein 2409741 4278946 Sfri_2034 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750718.1 2409529 D 318167 CDS YP_750719.1 114563206 4278947 complement(2409874..2410344) 1 NC_008345.1 KEGG: tcx:Tcr_1936 hypothetical protein; hypothetical protein 2410344 4278947 Sfri_2035 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750719.1 2409874 R 318167 CDS YP_750720.1 114563207 4278948 complement(2411138..2411425) 1 NC_008345.1 KEGG: tcx:Tcr_1933 uncharacterized conserved coiled coil protein; hypothetical protein 2411425 4278948 Sfri_2036 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750720.1 2411138 R 318167 CDS YP_750721.1 114563208 4278949 2411980..2412588 1 NC_008345.1 KEGG: pha:PSHAb0310 hypothetical protein; hypothetical protein 2412588 4278949 Sfri_2037 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750721.1 2411980 D 318167 CDS YP_750722.1 114563209 4278950 complement(2412716..2414455) 1 NC_008345.1 PFAM: protein of unknown function DUF885; KEGG: xcv:XCV4134 putative secreted protein; hypothetical protein 2414455 4278950 Sfri_2038 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750722.1 2412716 R 318167 CDS YP_750723.1 114563210 4278951 complement(2414717..2416513) 1 NC_008345.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: cps:CPS_1177 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 2416513 4278951 Sfri_2039 Shewanella frigidimarina NCIMB 400 acyl-CoA dehydrogenase domain-containing protein YP_750723.1 2414717 R 318167 CDS YP_750724.1 114563211 4278952 2417088..2419535 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_09015 TonB-dependent receptor; TonB-dependent receptor 2419535 4278952 Sfri_2040 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor YP_750724.1 2417088 D 318167 CDS YP_750725.1 114563212 4278953 2419677..2420339 1 NC_008345.1 PFAM: nitroreductase; KEGG: tcx:Tcr_0408 nitroreductase; nitroreductase 2420339 4278953 Sfri_2041 Shewanella frigidimarina NCIMB 400 nitroreductase YP_750725.1 2419677 D 318167 CDS YP_750726.1 114563213 4278954 2420353..2421342 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc1770 probable hydrolase protein; alpha/beta hydrolase 2421342 4278954 Sfri_2042 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase YP_750726.1 2420353 D 318167 CDS YP_750727.1 114563214 4278955 2421467..2422657 1 NC_008345.1 KEGG: bja:bll1370 hypothetical protein; hypothetical protein 2422657 4278955 Sfri_2043 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750727.1 2421467 D 318167 CDS YP_750728.1 114563215 4278956 2422744..2423655 1 NC_008345.1 PFAM: Bile acid:sodium symporter; KEGG: syn:sll1428 P3 protein; bile acid:sodium symporter 2423655 4278956 Sfri_2044 Shewanella frigidimarina NCIMB 400 bile acid:sodium symporter YP_750728.1 2422744 D 318167 CDS YP_750729.1 114563216 4278957 2423833..2424525 1 NC_008345.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2424525 4278957 Sfri_2045 Shewanella frigidimarina NCIMB 400 enoyl-CoA hydratase YP_750729.1 2423833 D 318167 CDS YP_750730.1 114563217 4278958 2424536..2425390 1 NC_008345.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccr:CC0353 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 2425390 4278958 Sfri_2046 Shewanella frigidimarina NCIMB 400 enoyl-CoA hydratase/isomerase YP_750730.1 2424536 D 318167 CDS YP_750731.1 114563218 4278959 2425481..2426266 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: cps:CPS_4105 hypothetical protein; alpha/beta hydrolase 2426266 4278959 Sfri_2047 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase YP_750731.1 2425481 D 318167 CDS YP_750732.1 114563219 4278960 2426340..2427443 1 NC_008345.1 KEGG: gsu:GSU0193 L-sorbosone dehydrogenase, putative; L-sorbosone dehydrogenase, putative 2427443 4278960 Sfri_2048 Shewanella frigidimarina NCIMB 400 L-sorbosone dehydrogenase, putative YP_750732.1 2426340 D 318167 CDS YP_750733.1 114563220 4278961 complement(2428087..2429163) 1 NC_008345.1 KEGG: bfr:BF0537 hypothetical protein; hypothetical protein 2429163 4278961 Sfri_2049 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750733.1 2428087 R 318167 CDS YP_750734.1 114563221 4278962 2429661..2429972 1 NC_008345.1 PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 2429972 4278962 Sfri_2050 Shewanella frigidimarina NCIMB 400 transposase IS3/IS911 family protein YP_750734.1 2429661 D 318167 CDS YP_750735.1 114563222 4278963 2430026..2430838 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 2430838 4278963 Sfri_2051 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_750735.1 2430026 D 318167 CDS YP_750736.1 114563223 4278964 2431721..2432173 1 NC_008345.1 KEGG: vfi:VFA1144 hypothetical cytosolic protein; hypothetical protein 2432173 4278964 Sfri_2052 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750736.1 2431721 D 318167 CDS YP_750737.1 114563224 4278965 2433066..2434625 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: pha:PSHAa0416 transposase; integrase catalytic subunit 2434625 4278965 Sfri_2053 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_750737.1 2433066 D 318167 CDS YP_750738.1 114563225 4278966 2434654..2435412 1 NC_008345.1 PFAM: IstB domain protein ATP-binding protein; KEGG: pha:PSHAa0414 transposase; IstB ATP binding domain-containing protein 2435412 4278966 Sfri_2054 Shewanella frigidimarina NCIMB 400 IstB ATP binding domain-containing protein YP_750738.1 2434654 D 318167 CDS YP_750739.1 114563226 4278967 complement(2435491..2436285) 1 NC_008345.1 KEGG: bpm:BURPS1710b_0124 GDSL-like lipase/acylhydrolase domain protein; GDSL-like lipase/acylhydrolase domain-containing protein 2436285 4278967 Sfri_2055 Shewanella frigidimarina NCIMB 400 GDSL-like lipase/acylhydrolase domain-containing protein YP_750739.1 2435491 R 318167 CDS YP_750740.1 114563227 4278968 complement(2436373..2437281) 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC1175 haloalkane dehalogenase, putative; haloalkane dehalogenase 2437281 4278968 Sfri_2056 Shewanella frigidimarina NCIMB 400 haloalkane dehalogenase YP_750740.1 2436373 R 318167 CDS YP_750741.1 114563228 4278969 complement(2437428..2438600) 1 NC_008345.1 KEGG: pha:PSHAa0678 hypothetical protein; hypothetical protein 2438600 4278969 Sfri_2057 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750741.1 2437428 R 318167 CDS YP_750742.1 114563229 4278970 complement(2438607..2439440) 1 NC_008345.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pha:PSHAa0679 ATPase; ATPase 2439440 4278970 Sfri_2058 Shewanella frigidimarina NCIMB 400 ATPase YP_750742.1 2438607 R 318167 CDS YP_750743.1 114563230 4278971 complement(2439514..2441628) 1 NC_008345.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sil:SPO1845 oxidoreductase, molybdopterin-binding; molybdopterin oxidoreductase 2441628 4278971 Sfri_2059 Shewanella frigidimarina NCIMB 400 molybdopterin oxidoreductase YP_750743.1 2439514 R 318167 CDS YP_750744.1 114563231 4278972 complement(2441811..2442809) 1 NC_008345.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: ilo:IL0315 predicted NADP-dependent oxidoreductases; alcohol dehydrogenase 2442809 4278972 Sfri_2060 Shewanella frigidimarina NCIMB 400 alcohol dehydrogenase YP_750744.1 2441811 R 318167 CDS YP_750745.1 114563232 4278973 complement(2442895..2443959) 1 NC_008345.1 KEGG: pha:PSHAb0546 hypothetical protein; hypothetical protein 2443959 4278973 Sfri_2061 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750745.1 2442895 R 318167 CDS YP_750746.1 114563233 4278974 complement(2444014..2445684) 1 NC_008345.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cps:CPS_1189 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 2445684 4278974 Sfri_2062 Shewanella frigidimarina NCIMB 400 AMP-dependent synthetase and ligase YP_750746.1 2444014 R 318167 CDS YP_750747.1 114563234 4278975 complement(2445791..2446972) 1 NC_008345.1 KEGG: sma:SAV1384 putative acyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 2446972 4278975 Sfri_2063 Shewanella frigidimarina NCIMB 400 acetyl-CoA acetyltransferase YP_750747.1 2445791 R 318167 CDS YP_750748.1 114563235 4278976 complement(2447103..2448023) 1 NC_008345.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccr:CC2093 3-oxoacyl-(acyl-carrier-protein) reductase, putative; short-chain dehydrogenase/reductase SDR 2448023 4278976 Sfri_2064 Shewanella frigidimarina NCIMB 400 short-chain dehydrogenase/reductase SDR YP_750748.1 2447103 R 318167 CDS YP_750749.1 114563236 4278977 complement(2448081..2448542) 1 NC_008345.1 PFAM: MaoC domain protein dehydratase; KEGG: eli:ELI_12095 MaoC domain protein; dehydratase 2448542 4278977 Sfri_2065 Shewanella frigidimarina NCIMB 400 dehydratase YP_750749.1 2448081 R 318167 CDS YP_750750.1 114563237 4278978 complement(2448929..2450734) 1 NC_008345.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: psp:PSPPH_0495 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 2450734 4278978 Sfri_2066 Shewanella frigidimarina NCIMB 400 acyl-CoA dehydrogenase domain-containing protein YP_750750.1 2448929 R 318167 CDS YP_750751.1 114563238 4278979 complement(2450860..2451621) 1 NC_008345.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bur:Bcep18194_B3036 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2451621 4278979 Sfri_2067 Shewanella frigidimarina NCIMB 400 short-chain dehydrogenase/reductase SDR YP_750751.1 2450860 R 318167 CDS YP_750752.1 114563239 4278980 complement(2451776..2452810) 1 NC_008345.1 PFAM: aminoglycoside phosphotransferase; KEGG: bur:Bcep18194_B3038 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2452810 4278980 Sfri_2068 Shewanella frigidimarina NCIMB 400 aminoglycoside phosphotransferase YP_750752.1 2451776 R 318167 CDS YP_750753.1 114563240 4278981 complement(2453019..2454230) 1 NC_008345.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: ppu:PP2437 acyl-CoA dehydrogenase, putative; acyl-CoA dehydrogenase domain-containing protein 2454230 4278981 Sfri_2069 Shewanella frigidimarina NCIMB 400 acyl-CoA dehydrogenase domain-containing protein YP_750753.1 2453019 R 318167 CDS YP_750754.1 114563241 4278982 complement(2454321..2455445) 1 NC_008345.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: psb:Psyr_1011 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 2455445 4278982 Sfri_2070 Shewanella frigidimarina NCIMB 400 NADH:flavin oxidoreductase YP_750754.1 2454321 R 318167 CDS YP_750755.1 114563242 4278983 complement(2455528..2456298) 1 NC_008345.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl_3419 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2456298 4278983 Sfri_2071 Shewanella frigidimarina NCIMB 400 short chain dehydrogenase YP_750755.1 2455528 R 318167 CDS YP_750756.1 114563243 4278984 complement(2456354..2457088) 1 NC_008345.1 PFAM: Phosphoglycerate mutase; KEGG: aci:ACIAD1884 putative phosphoglycerate mutase related protein; phosphoglycerate mutase 2457088 4278984 Sfri_2072 Shewanella frigidimarina NCIMB 400 phosphoglycerate mutase YP_750756.1 2456354 R 318167 CDS YP_750757.1 114563244 4278985 2457466..2458377 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rso:RSc2018 probable transcription regulator protein; transcriptional regulator, LysR family protein 2458377 4278985 Sfri_2073 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_750757.1 2457466 D 318167 CDS YP_750758.1 114563245 4278986 complement(2458647..2461385) 1 NC_008345.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; extracellular solute-binding protein, family 3; PAS fold-3 domain protein; PAS fold-4 domain protein; KEGG: gme:Gmet_3085 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 2461385 4278986 Sfri_2074 Shewanella frigidimarina NCIMB 400 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_750758.1 2458647 R 318167 CDS YP_750759.1 114563246 4278987 complement(2461925..2462701) 1 NC_008345.1 KEGG: son:SO4042 hydratase/decarboxylase family protein; hydratase/decarboxylase family protein 2462701 4278987 Sfri_2075 Shewanella frigidimarina NCIMB 400 hydratase/decarboxylase family protein YP_750759.1 2461925 R 318167 CDS YP_750760.1 114563247 4278988 complement(2462913..2464055) 1 NC_008345.1 KEGG: ppr:PBPRA1435 hypothetical protein; hypothetical protein 2464055 4278988 Sfri_2076 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750760.1 2462913 R 318167 CDS YP_750761.1 114563248 4278989 2464299..2465960 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2525 ABC transporter, ATP-binding protein; ABC transporter 2465960 4278989 Sfri_2077 Shewanella frigidimarina NCIMB 400 ABC transporter YP_750761.1 2464299 D 318167 CDS YP_750762.1 114563249 4278990 2466343..2468583 1 NC_008345.1 PFAM: peptidase U32; KEGG: ppr:PBPRA1758 putative collagenase family protease; peptidase U32 2468583 4278990 Sfri_2078 Shewanella frigidimarina NCIMB 400 peptidase U32 YP_750762.1 2466343 D 318167 CDS YP_750763.1 114563250 4278991 2469255..2472239 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa2457 TonB-dependent receptor; TonB-dependent receptor 2472239 4278991 Sfri_2079 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor YP_750763.1 2469255 D 318167 CDS YP_750764.1 114563251 4278992 2472836..2473714 1 NC_008345.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pha:PSHAa1750 tartronate semialdehyde reductase (TSAR); 6-phosphogluconate dehydrogenase 2473714 4278992 Sfri_2080 Shewanella frigidimarina NCIMB 400 6-phosphogluconate dehydrogenase YP_750764.1 2472836 D 318167 CDS YP_750765.1 114563252 4278993 2474007..2474360 1 NC_008345.1 PFAM: protein of unknown function UPF0153; KEGG: cps:CPS_2168 conserved hypothetical protein; hypothetical protein 2474360 4278993 Sfri_2081 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750765.1 2474007 D 318167 CDS YP_750766.1 114563253 4278994 2474609..2475199 1 NC_008345.1 hypothetical protein 2475199 4278994 Sfri_2082 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750766.1 2474609 D 318167 CDS YP_750767.1 114563254 4278995 2475466..2477313 1 NC_008345.1 KEGG: ava:Ava_B0313 hypothetical protein; hypothetical protein 2477313 4278995 Sfri_2083 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750767.1 2475466 D 318167 CDS YP_750768.1 114563255 4278996 complement(2477368..2477838) 1 NC_008345.1 KEGG: ana:alr4914 unknown protein; hypothetical protein 2477838 4278996 Sfri_2084 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750768.1 2477368 R 318167 CDS YP_750769.1 114563256 4278997 complement(2477813..2479873) 1 NC_008345.1 KEGG: ana:alr4911 unknown protein; DNA repair ATPase-like protein 2479873 4278997 Sfri_2085 Shewanella frigidimarina NCIMB 400 DNA repair ATPase-like protein YP_750769.1 2477813 R 318167 CDS YP_750770.1 114563257 4278998 complement(2479860..2480084) 1 NC_008345.1 hypothetical protein 2480084 4278998 Sfri_2086 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750770.1 2479860 R 318167 CDS YP_750771.1 114563258 4278999 complement(2480084..2482231) 1 NC_008345.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD/DEAH box helicase domain protein; KEGG: sma:SAV2928 DNA repair helicase; type III restriction enzyme, res subunit 2482231 4278999 Sfri_2087 Shewanella frigidimarina NCIMB 400 type III restriction enzyme, res subunit YP_750771.1 2480084 R 318167 CDS YP_750772.1 114563259 4279000 complement(2482240..2484582) 1 NC_008345.1 PFAM: protein of unknown function DUF262; KEGG: hpj:jhp0462 hypothetical protein; hypothetical protein 2484582 4279000 Sfri_2088 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750772.1 2482240 R 318167 CDS YP_750773.1 114563260 4279001 2484967..2485923 1 NC_008345.1 KEGG: eca:ECA2874 hypothetical protein; hypothetical protein 2485923 4279001 Sfri_2089 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750773.1 2484967 D 318167 CDS YP_750774.1 114563261 4279002 2485904..2489320 1 NC_008345.1 KEGG: eca:ECA2875 putative ATP-binding protein; hypothetical protein 2489320 4279002 Sfri_2090 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750774.1 2485904 D 318167 CDS YP_750775.1 114563262 4279003 2489313..2490209 1 NC_008345.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: eca:ECA2876 putative phage-related protein; phosphoadenosine phosphosulfate reductase 2490209 4279003 Sfri_2091 Shewanella frigidimarina NCIMB 400 phosphoadenosine phosphosulfate reductase YP_750775.1 2489313 D 318167 CDS YP_750776.1 114563263 4279004 complement(2490221..2491282) 1 NC_008345.1 PFAM: aminotransferase, class V; KEGG: ecu:ECU11_1770 cysteine desulfurase; class V aminotransferase 2491282 4279004 Sfri_2092 Shewanella frigidimarina NCIMB 400 class V aminotransferase YP_750776.1 2490221 R 318167 CDS YP_750777.1 114563264 4279005 2491927..2493222 1 NC_008345.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: pha:PSHAb0513 putative secreted hydrolase; amidohydrolase 2493222 4279005 Sfri_2093 Shewanella frigidimarina NCIMB 400 amidohydrolase YP_750777.1 2491927 D 318167 CDS YP_750778.1 114563265 4279006 complement(2494265..2495167) 1 NC_008345.1 KEGG: son:SO2518 hypothetical protein; hypothetical protein 2495167 4279006 Sfri_2094 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750778.1 2494265 R 318167 CDS YP_750779.1 114563266 4279007 2495779..2496102 1 NC_008345.1 PFAM: protein of unknown function DUF74; KEGG: cps:CPS_2458 hypothetical protein; hypothetical protein 2496102 4279007 Sfri_2095 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750779.1 2495779 D 318167 CDS YP_750780.1 114563267 4279008 2496346..2496798 1 NC_008345.1 PFAM: protein of unknown function DUF302; KEGG: cps:CPS_2735 hypothetical protein; hypothetical protein 2496798 4279008 Sfri_2096 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750780.1 2496346 D 318167 CDS YP_750781.1 114563268 4279009 2497147..2497854 1 NC_008345.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sde:Sde_0124 short chain dehydrogenase family protein; short-chain dehydrogenase/reductase SDR 2497854 4279009 Sfri_2097 Shewanella frigidimarina NCIMB 400 short-chain dehydrogenase/reductase SDR YP_750781.1 2497147 D 318167 CDS YP_750782.1 114563269 4279010 2498133..2498519 1 NC_008345.1 KEGG: vpa:VPA0774 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2498519 4279010 Sfri_2098 Shewanella frigidimarina NCIMB 400 lactoylglutathione lyase YP_750782.1 2498133 D 318167 CDS YP_750783.1 114563270 4279011 2498533..2499633 1 NC_008345.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: vpa:VPA0773 N-ethylmaleimide reductase; NADH:flavin oxidoreductase 2499633 4279011 Sfri_2099 Shewanella frigidimarina NCIMB 400 NADH:flavin oxidoreductase YP_750783.1 2498533 D 318167 CDS YP_750784.1 114563271 4279012 complement(2500027..2500863) 1 NC_008345.1 PFAM: MscS Mechanosensitive ion channel; KEGG: vpa:VPA1439 hypothetical protein; MscS mechanosensitive ion channel 2500863 4279012 Sfri_2100 Shewanella frigidimarina NCIMB 400 MscS mechanosensitive ion channel YP_750784.1 2500027 R 318167 CDS YP_750785.1 114563272 4279013 complement(2501134..2501967) 1 NC_008345.1 hypothetical protein 2501967 4279013 Sfri_2101 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750785.1 2501134 R 318167 CDS YP_750786.1 114563273 4279014 complement(2502260..2502913) 1 NC_008345.1 KEGG: vfi:VF1324 hypothetical protein; hypothetical protein 2502913 4279014 Sfri_2102 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750786.1 2502260 R 318167 CDS YP_750787.1 114563274 4279015 2503767..2504903 1 NC_008345.1 KEGG: son:SO2099 hydrogenase small chain; TIGRFAM: hydrogenase (NiFe) small subunit HydA; Twin-arginine translocation pathway signal; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; hydrogenase (NiFe) small subunit HydA 2504903 4279015 Sfri_2103 Shewanella frigidimarina NCIMB 400 hydrogenase (NiFe) small subunit HydA YP_750787.1 2503767 D 318167 CDS YP_750788.1 114563275 4279016 2504906..2506609 1 NC_008345.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: son:SO2098 hydrogenase large chain; nickel-dependent hydrogenase, large subunit 2506609 4279016 Sfri_2104 Shewanella frigidimarina NCIMB 400 nickel-dependent hydrogenase, large subunit YP_750788.1 2504906 D 318167 CDS YP_750789.1 114563276 4279017 2506641..2507309 1 NC_008345.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: son:SO2097 quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 2507309 4279017 Sfri_2105 Shewanella frigidimarina NCIMB 400 Ni/Fe-hydrogenase, b-type cytochrome subunit YP_750789.1 2506641 D 318167 CDS YP_750790.1 114563277 4279018 2507325..2507879 1 NC_008345.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein; KEGG: son:SO2096 hydrogenase expression/formation protein; hydrogenase maturation protease 2507879 4279018 Sfri_2106 Shewanella frigidimarina NCIMB 400 hydrogenase maturation protease YP_750790.1 2507325 D 318167 CDS YP_750791.1 114563278 4279019 2507866..2509869 1 NC_008345.1 KEGG: son:SO2095 hypothetical protein; hypothetical protein 2509869 4279019 Sfri_2107 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750791.1 2507866 D 318167 CDS YP_750792.1 114563279 4279020 2509925..2512336 1 NC_008345.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain protein; zinc finger, HypF domain protein; KEGG: son:SO2094 hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF 2512336 4279020 Sfri_2108 Shewanella frigidimarina NCIMB 400 (NiFe) hydrogenase maturation protein HypF YP_750792.1 2509925 D 318167 CDS YP_750793.1 114563280 4279021 2512633..2513352 1 NC_008345.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: son:SO2093 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 2513352 4279021 Sfri_2109 Shewanella frigidimarina NCIMB 400 hydrogenase nickel incorporation protein HypB YP_750793.1 2512633 D 318167 CDS YP_750794.1 114563281 4279022 2513355..2513597 1 NC_008345.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: son:SO2092 hydrogenase assembly chaperone hypC/hupF; hydrogenase assembly chaperone HypC/HupF 2513597 4279022 Sfri_2110 Shewanella frigidimarina NCIMB 400 hydrogenase assembly chaperone HypC/HupF YP_750794.1 2513355 D 318167 CDS YP_750795.1 114563282 4279023 2513594..2514721 1 NC_008345.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: son:SO2091 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD 2514721 4279023 Sfri_2111 Shewanella frigidimarina NCIMB 400 hydrogenase expression/formation protein HypD YP_750795.1 2513594 D 318167 CDS YP_750796.1 114563283 4279024 2514711..2515718 1 NC_008345.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: son:SO2090 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2515718 4279024 Sfri_2112 Shewanella frigidimarina NCIMB 400 hydrogenase expression/formation protein HypE YP_750796.1 2514711 D 318167 CDS YP_750797.1 114563284 4279025 2515718..2516062 1 NC_008345.1 PFAM: hydrogenase expression/synthesis, HypA; KEGG: son:SO2089 hydrogenase expression/formation protein HypA; hydrogenase expression/synthesis, HypA 2516062 4279025 Sfri_2113 Shewanella frigidimarina NCIMB 400 hydrogenase expression/synthesis, HypA YP_750797.1 2515718 D 318167 CDS YP_750798.1 114563285 4279026 2516142..2516306 1 NC_008345.1 hypothetical protein 2516306 4279026 Sfri_2114 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750798.1 2516142 D 318167 CDS YP_750799.1 114563286 4279027 complement(2516490..2518247) 1 NC_008345.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO2395 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 2518247 4279027 Sfri_2115 Shewanella frigidimarina NCIMB 400 acyl-CoA dehydrogenase domain-containing protein YP_750799.1 2516490 R 318167 CDS YP_750800.1 114563287 4279028 2518593..2519528 1 NC_008345.1 KEGG: son:SO2517 hypothetical protein; hypothetical protein 2519528 4279028 Sfri_2116 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750800.1 2518593 D 318167 CDS YP_750801.1 114563288 4279029 complement(2519607..2520158) 1 NC_008345.1 KEGG: son:SO2396 hypothetical protein; hypothetical protein 2520158 4279029 Sfri_2117 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750801.1 2519607 R 318167 CDS YP_750802.1 114563289 4279030 complement(2520186..2521028) 1 NC_008345.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO2397 short chain dehydrogenase; short chain dehydrogenase 2521028 4279030 Sfri_2118 Shewanella frigidimarina NCIMB 400 short chain dehydrogenase YP_750802.1 2520186 R 318167 CDS YP_750803.1 114563290 4279031 complement(2521139..2521837) 1 NC_008345.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2521837 4279031 Sfri_2119 Shewanella frigidimarina NCIMB 400 orotidine 5'-phosphate decarboxylase YP_750803.1 2521139 R 318167 CDS YP_750804.1 114563291 4279032 complement(2521906..2523066) 1 NC_008345.1 KEGG: son:SO2399 hypothetical protein; tetratricopeptide repeat protein 2523066 4279032 Sfri_2120 Shewanella frigidimarina NCIMB 400 tetratricopeptide repeat protein YP_750804.1 2521906 R 318167 CDS YP_750805.1 114563292 4279033 complement(2523068..2523376) 1 NC_008345.1 PFAM: protein of unknown function DUF1049; KEGG: son:SO2400 hypothetical protein; hypothetical protein 2523376 4279033 Sfri_2121 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750805.1 2523068 R 318167 CDS YP_750806.1 114563293 4279034 complement(2523487..2523774) 1 NC_008345.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2523774 ihfB 4279034 ihfB Shewanella frigidimarina NCIMB 400 integration host factor subunit beta YP_750806.1 2523487 R 318167 CDS YP_750807.1 114563294 4279035 complement(2523852..2525519) 1 NC_008345.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2525519 rpsA 4279035 rpsA Shewanella frigidimarina NCIMB 400 30S ribosomal protein S1 YP_750807.1 2523852 R 318167 CDS YP_750808.1 114563295 4279036 complement(2525634..2526323) 1 NC_008345.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2526323 cmk 4279036 cmk Shewanella frigidimarina NCIMB 400 cytidylate kinase YP_750808.1 2525634 R 318167 CDS YP_750809.1 114563296 4279037 complement(2526504..2527784) 1 NC_008345.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2527784 4279037 Sfri_2125 Shewanella frigidimarina NCIMB 400 3-phosphoshikimate 1-carboxyvinyltransferase YP_750809.1 2526504 R 318167 CDS YP_750810.1 114563297 4279038 2528223..2529413 1 NC_008345.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2529413 4279038 Sfri_2126 Shewanella frigidimarina NCIMB 400 aromatic amino acid aminotransferase YP_750810.1 2528223 D 318167 CDS YP_750811.1 114563298 4279039 2529919..2531280 1 NC_008345.1 KEGG: son:SO0919 serine transporter, putative; serine transporter 2531280 4279039 Sfri_2127 Shewanella frigidimarina NCIMB 400 serine transporter YP_750811.1 2529919 D 318167 CDS YP_750812.1 114563299 4279040 2531494..2532573 1 NC_008345.1 KEGG: son:SO2905 O-methyltransferase, putative; O-methyltransferase 2532573 4279040 Sfri_2128 Shewanella frigidimarina NCIMB 400 O-methyltransferase YP_750812.1 2531494 D 318167 CDS YP_750813.1 114563300 4279041 complement(2532733..2533824) 1 NC_008345.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2533824 4279041 Sfri_2129 Shewanella frigidimarina NCIMB 400 phosphoserine aminotransferase YP_750813.1 2532733 R 318167 CDS YP_750814.1 114563301 4279042 complement(2534002..2536731) 1 NC_008345.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: son:SO2411 DNA gyrase subunit A; DNA gyrase subunit A 2536731 4279042 Sfri_2130 Shewanella frigidimarina NCIMB 400 DNA gyrase subunit A YP_750814.1 2534002 R 318167 CDS YP_750815.1 114563302 4279043 2537119..2537841 1 NC_008345.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2537841 4279043 Sfri_2131 Shewanella frigidimarina NCIMB 400 3-demethylubiquinone-9 3-methyltransferase YP_750815.1 2537119 D 318167 CDS YP_750816.1 114563303 4279044 2537965..2538627 1 NC_008345.1 KEGG: son:SO2414 phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 2538627 4279044 Sfri_2132 Shewanella frigidimarina NCIMB 400 HAD family hydrolase YP_750816.1 2537965 D 318167 CDS YP_750817.1 114563304 4279045 2539219..2541507 1 NC_008345.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2541507 4279045 Sfri_2133 Shewanella frigidimarina NCIMB 400 ribonucleotide-diphosphate reductase subunit alpha YP_750817.1 2539219 D 318167 CDS YP_750818.1 114563305 4279046 2541580..2542710 1 NC_008345.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2542710 nrdB 4279046 nrdB Shewanella frigidimarina NCIMB 400 ribonucleotide-diphosphate reductase subunit beta YP_750818.1 2541580 D 318167 CDS YP_750819.1 114563306 4279047 2542700..2543101 1 NC_008345.1 PFAM: ferredoxin; KEGG: son:SO2417 iron-sulfur cluster-binding protein; ferredoxin 2543101 4279047 Sfri_2135 Shewanella frigidimarina NCIMB 400 ferredoxin YP_750819.1 2542700 D 318167 CDS YP_750820.1 114563307 4279048 complement(2543125..2543421) 1 NC_008345.1 KEGG: pha:PSHAa0636 hypothetical protein; hypothetical protein 2543421 4279048 Sfri_2136 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750820.1 2543125 R 318167 CDS YP_750821.1 114563308 4279049 complement(2543872..2544705) 1 NC_008345.1 KEGG: cps:CPS_3364 hypothetical protein; hypothetical protein 2544705 4279049 Sfri_2137 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750821.1 2543872 R 318167 CDS YP_750822.1 114563309 4279050 complement(2544692..2545840) 1 NC_008345.1 KEGG: vpa:VP1356 hypothetical protein; hypothetical protein 2545840 4279050 Sfri_2138 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750822.1 2544692 R 318167 CDS YP_750823.1 114563310 4279051 2546472..2547335 1 NC_008345.1 PFAM: protein of unknown function RIO1; KEGG: son:SO3973 RIO1/ZK632.3/MJ0444 family, putative; hypothetical protein 2547335 4279051 Sfri_2139 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750823.1 2546472 D 318167 CDS YP_750824.1 114563311 4279052 2547778..2548104 1 NC_008345.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: tdn:Tmden_1322 hypothetical protein; calcium-binding EF-hand-containing protein 2548104 4279052 Sfri_2140 Shewanella frigidimarina NCIMB 400 calcium-binding EF-hand-containing protein YP_750824.1 2547778 D 318167 CDS YP_750825.1 114563312 4279053 complement(2548293..2548586) 1 NC_008345.1 KEGG: hch:HCH_06678 hypothetical protein; hypothetical protein 2548586 4279053 Sfri_2141 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750825.1 2548293 R 318167 CDS YP_750826.1 114563313 4279054 2548870..2549550 1 NC_008345.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ilo:IL1575 L-2-haloalkanoic acid dehalogenase, HAD superfamily; haloacid dehalogenase 2549550 4279054 Sfri_2142 Shewanella frigidimarina NCIMB 400 haloacid dehalogenase YP_750826.1 2548870 D 318167 CDS YP_750827.1 114563314 4279055 2549699..2550568 1 NC_008345.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: vpa:VPA1298 putative glutathione S-transferase; glutathione S-transferase domain-containing protein 2550568 4279055 Sfri_2143 Shewanella frigidimarina NCIMB 400 glutathione S-transferase domain-containing protein YP_750827.1 2549699 D 318167 CDS YP_750828.1 114563315 4279056 complement(2550723..2552738) 1 NC_008345.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO2419 2,4-dienoyl-CoA reductase, putative; NADH:flavin oxidoreductase 2552738 4279056 Sfri_2144 Shewanella frigidimarina NCIMB 400 NADH:flavin oxidoreductase YP_750828.1 2550723 R 318167 CDS YP_750829.1 114563316 4279057 2552902..2554746 1 NC_008345.1 TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: son:SO2420 signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 67K type 2554746 4279057 Sfri_2145 Shewanella frigidimarina NCIMB 400 signal peptide peptidase SppA, 67K type YP_750829.1 2552902 D 318167 CDS YP_750830.1 114563317 4279058 2554878..2555891 1 NC_008345.1 converts asparagine to aspartate and ammonia; asparaginase 2555891 ansA 4279058 ansA Shewanella frigidimarina NCIMB 400 asparaginase YP_750830.1 2554878 D 318167 CDS YP_750831.1 114563318 4279059 complement(2556026..2556307) 1 NC_008345.1 PFAM: protein of unknown function DUF1315; KEGG: son:SO2422 hypothetical protein; hypothetical protein 2556307 4279059 Sfri_2147 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750831.1 2556026 R 318167 CDS YP_750832.1 114563319 4279060 complement(2556304..2556621) 1 NC_008345.1 KEGG: son:SO2423 hypothetical protein; hypothetical protein 2556621 4279060 Sfri_2148 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750832.1 2556304 R 318167 CDS YP_750833.1 114563320 4279061 complement(2556678..2557802) 1 NC_008345.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: son:SO2424 zinc carboxypeptidase domain protein; peptidase M14, carboxypeptidase A 2557802 4279061 Sfri_2149 Shewanella frigidimarina NCIMB 400 peptidase M14, carboxypeptidase A YP_750833.1 2556678 R 318167 CDS YP_750834.1 114563321 4279062 complement(2557909..2558571) 1 NC_008345.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2426 DNA-binding response regulator; two component transcriptional regulator, winged helix family protein 2558571 4279062 Sfri_2150 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, winged helix family protein YP_750834.1 2557909 R 318167 CDS YP_750835.1 114563322 4279063 complement(2558730..2560529) 1 NC_008345.1 PFAM: protein of unknown function DUF885; KEGG: son:SO2570 lipoprotein, putative; hypothetical protein 2560529 4279063 Sfri_2151 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750835.1 2558730 R 318167 CDS YP_750836.1 114563323 4279064 2560800..2561729 1 NC_008345.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2561729 4279064 Sfri_2152 Shewanella frigidimarina NCIMB 400 lipid kinase YP_750836.1 2560800 D 318167 CDS YP_750837.1 114563324 4279065 complement(2561783..2563102) 1 NC_008345.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: vfi:VF1790 ATP-dependent RNA helicase; DEAD/DEAH box helicase 2563102 4279065 Sfri_2153 Shewanella frigidimarina NCIMB 400 DEAD/DEAH box helicase YP_750837.1 2561783 R 318167 CDS YP_750838.1 114563325 4279066 complement(2563607..2564239) 1 NC_008345.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO2137 multiple antibiotic resistance protein; hypothetical protein 2564239 4279066 Sfri_2154 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750838.1 2563607 R 318167 CDS YP_750839.1 114563326 4279067 complement(2564911..2566971) 1 NC_008345.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: son:SO2223 peptidase, putative; peptidase S9 prolyl oligopeptidase 2566971 4279067 Sfri_2155 Shewanella frigidimarina NCIMB 400 peptidase S9 prolyl oligopeptidase YP_750839.1 2564911 R 318167 CDS YP_750840.1 114563327 4279068 complement(2567169..2568746) 1 NC_008345.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: son:SO2222 fumarate hydratase, class I, anaerobic, putative; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 2568746 4279068 Sfri_2156 Shewanella frigidimarina NCIMB 400 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha YP_750840.1 2567169 R 318167 CDS YP_750841.1 114563328 4279069 2568885..2570306 1 NC_008345.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: son:SO2221 para-aminobenzoate synthase, component I; para-aminobenzoate synthase subunit I 2570306 4279069 Sfri_2157 Shewanella frigidimarina NCIMB 400 para-aminobenzoate synthase subunit I YP_750841.1 2568885 D 318167 CDS YP_750842.1 114563329 4279070 2570925..2571599 1 NC_008345.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: par:Psyc_0418 probable glutathione S-transferase; glutathione S-transferase domain-containing protein 2571599 4279070 Sfri_2158 Shewanella frigidimarina NCIMB 400 glutathione S-transferase domain-containing protein YP_750842.1 2570925 D 318167 CDS YP_750843.1 114563330 4279071 2571973..2573694 1 NC_008345.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: son:SO1755 phosphoglucomutase/phosphomannomutase family protein; phosphoglucomutase/phosphomannomutase alpha/beta/subunit 2573694 4279071 Sfri_2159 Shewanella frigidimarina NCIMB 400 phosphoglucomutase/phosphomannomutase alpha/beta/subunit YP_750843.1 2571973 D 318167 CDS YP_750844.1 114563331 4279072 2573958..2576351 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ilo:IL2271 outer membrane protein; TonB-dependent receptor, plug 2576351 4279072 Sfri_2160 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor, plug YP_750844.1 2573958 D 318167 CDS YP_750845.1 114563332 4279073 complement(2576530..2578245) 1 NC_008345.1 PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: son:SO1499 glycogen synthase; starch synthase 2578245 4279073 Sfri_2161 Shewanella frigidimarina NCIMB 400 starch synthase YP_750845.1 2576530 R 318167 CDS YP_750846.1 114563333 4279074 complement(2578255..2579517) 1 NC_008345.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 2579517 glgC 4279074 glgC Shewanella frigidimarina NCIMB 400 glucose-1-phosphate adenylyltransferase YP_750846.1 2578255 R 318167 CDS YP_750847.1 114563334 4279075 complement(2579613..2582129) 1 NC_008345.1 KEGG: son:SO1496 glycogen phosphorylase family protein; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase 2582129 4279075 Sfri_2163 Shewanella frigidimarina NCIMB 400 glycogen/starch/alpha-glucan phosphorylase YP_750847.1 2579613 R 318167 CDS YP_750848.1 114563335 4279076 complement(2582129..2584255) 1 NC_008345.1 KEGG: son:SO1495 glycogen operon protein; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX 2584255 4279076 Sfri_2164 Shewanella frigidimarina NCIMB 400 glycogen debranching protein GlgX YP_750848.1 2582129 R 318167 CDS YP_750849.1 114563336 4279077 complement(2584271..2586505) 1 NC_008345.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 2586505 4279077 Sfri_2165 Shewanella frigidimarina NCIMB 400 glycogen branching protein YP_750849.1 2584271 R 318167 CDS YP_750850.1 114563337 4279078 complement(2586519..2588804) 1 NC_008345.1 KEGG: son:SO1493 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; 4-alpha-glucanotransferase 2588804 4279078 Sfri_2166 Shewanella frigidimarina NCIMB 400 4-alpha-glucanotransferase YP_750850.1 2586519 R 318167 CDS YP_750851.1 114563338 4279079 2589601..2590176 1 NC_008345.1 PFAM: NUDIX hydrolase; KEGG: son:SO2220 MutT/nudix family protein; NUDIX hydrolase 2590176 4279079 Sfri_2167 Shewanella frigidimarina NCIMB 400 NUDIX hydrolase YP_750851.1 2589601 D 318167 CDS YP_750852.1 114563339 4279080 complement(2590290..2590625) 1 NC_008345.1 KEGG: son:SO2219 hypothetical protein; hypothetical protein 2590625 4279080 Sfri_2168 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750852.1 2590290 R 318167 CDS YP_750853.1 114563340 4279081 2590807..2592207 1 NC_008345.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2592207 asnC 4279081 asnC Shewanella frigidimarina NCIMB 400 asparaginyl-tRNA synthetase YP_750853.1 2590807 D 318167 CDS YP_750854.1 114563341 4279082 complement(2592524..2594545) 1 NC_008345.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2594545 4279082 Sfri_2170 Shewanella frigidimarina NCIMB 400 excinuclease ABC subunit B YP_750854.1 2592524 R 318167 CDS YP_750855.1 114563342 4279083 2596956..2598854 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO2507 GGDEF domain protein; diguanylate cyclase/phosphodiesterase 2598854 4279083 Sfri_2171 Shewanella frigidimarina NCIMB 400 diguanylate cyclase/phosphodiesterase YP_750855.1 2596956 D 318167 CDS YP_750856.1 114563343 4279084 2598910..2599572 1 NC_008345.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: son:SO2508 RnfAE/NqrDE family protein; Na(+)-translocating NADH-quinone reductase subunit E 2599572 4279084 Sfri_2172 Shewanella frigidimarina NCIMB 400 Na(+)-translocating NADH-quinone reductase subunit E YP_750856.1 2598910 D 318167 CDS YP_750857.1 114563344 4279085 2599572..2600153 1 NC_008345.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2600153 4279085 Sfri_2173 Shewanella frigidimarina NCIMB 400 electron transport complex protein RnfB YP_750857.1 2599572 D 318167 CDS YP_750858.1 114563345 4279086 2600147..2602687 1 NC_008345.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2602687 4279086 Sfri_2174 Shewanella frigidimarina NCIMB 400 electron transport complex protein RnfC YP_750858.1 2600147 D 318167 CDS YP_750859.1 114563346 4279087 2602690..2603742 1 NC_008345.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 2603742 rnfD 4279087 rnfD Shewanella frigidimarina NCIMB 400 electron transport complex protein RnfD YP_750859.1 2602690 D 318167 CDS YP_750860.1 114563347 4279088 2603745..2604392 1 NC_008345.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: son:SO2512 electron transport complex protein RnfG; electron transport complex, RnfABCDGE type, G subunit 2604392 4279088 Sfri_2176 Shewanella frigidimarina NCIMB 400 electron transport complex, RnfABCDGE type, G subunit YP_750860.1 2603745 D 318167 CDS YP_750861.1 114563348 4279089 2604385..2605080 1 NC_008345.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 2605080 4279089 Sfri_2177 Shewanella frigidimarina NCIMB 400 electron transport complex protein RsxE YP_750861.1 2604385 D 318167 CDS YP_750862.1 114563349 4279090 2605139..2605780 1 NC_008345.1 KEGG: son:SO2514 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 2605780 4279090 Sfri_2178 Shewanella frigidimarina NCIMB 400 endonuclease III YP_750862.1 2605139 D 318167 CDS YP_750863.1 114563350 4279091 2606159..2606569 1 NC_008345.1 KEGG: son:SO2044 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2606569 4279091 Sfri_2179 Shewanella frigidimarina NCIMB 400 lactoylglutathione lyase YP_750863.1 2606159 D 318167 CDS YP_750864.1 114563351 4279092 complement(2606748..2607758) 1 NC_008345.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2607758 ruvB 4279092 ruvB Shewanella frigidimarina NCIMB 400 Holliday junction DNA helicase RuvB YP_750864.1 2606748 R 318167 CDS YP_750865.1 114563352 4279093 complement(2607789..2608406) 1 NC_008345.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2608406 ruvA 4279093 ruvA Shewanella frigidimarina NCIMB 400 Holliday junction DNA helicase RuvA YP_750865.1 2607789 R 318167 CDS YP_750866.1 114563353 4279094 complement(2608403..2608924) 1 NC_008345.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2608924 ruvC 4279094 ruvC Shewanella frigidimarina NCIMB 400 Holliday junction resolvase YP_750866.1 2608403 R 318167 CDS YP_750867.1 114563354 4279095 complement(2608932..2609684) 1 NC_008345.1 PFAM: protein of unknown function DUF28; KEGG: son:SO2432 conserved hypothetical protein TIGR01033; hypothetical protein 2609684 4279095 Sfri_2183 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750867.1 2608932 R 318167 CDS YP_750868.1 114563355 4279096 complement(2609808..2611583) 1 NC_008345.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2611583 aspS 4279096 aspS Shewanella frigidimarina NCIMB 400 aspartyl-tRNA synthetase YP_750868.1 2609808 R 318167 CDS YP_750869.1 114563356 4279097 complement(2611755..2614580) 1 NC_008345.1 KEGG: son:SO2434 extracellular solute-binding proteins, family 3/GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3; diguanylate cyclase 2614580 4279097 Sfri_2185 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_750869.1 2611755 R 318167 CDS YP_750870.1 114563357 4279098 2614968..2615699 1 NC_008345.1 TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2435 methyltransferase, putative; putative methyltransferase 2615699 4279098 Sfri_2186 Shewanella frigidimarina NCIMB 400 putative methyltransferase YP_750870.1 2614968 D 318167 CDS YP_750871.1 114563358 4279099 2615696..2616688 1 NC_008345.1 TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2436 methyltransferase, putative; putative methyltransferase 2616688 4279099 Sfri_2187 Shewanella frigidimarina NCIMB 400 putative methyltransferase YP_750871.1 2615696 D 318167 CDS YP_750872.1 114563359 4279100 2616714..2617484 1 NC_008345.1 PFAM: protein of unknown function DUF785; KEGG: ppr:PBPRA1108 hypothetical protein; hypothetical protein 2617484 4279100 Sfri_2188 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750872.1 2616714 D 318167 CDS YP_750873.1 114563360 4279101 2617493..2619001 1 NC_008345.1 KEGG: vvu:VV12151 gonadoliberin III-related protein; gonadoliberin III-like protein 2619001 4279101 Sfri_2189 Shewanella frigidimarina NCIMB 400 gonadoliberin III-like protein YP_750873.1 2617493 D 318167 CDS YP_750874.1 114563361 4279102 2619001..2619957 1 NC_008345.1 TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: vpa:VP1040 hypothetical protein; alpha-L-glutamate ligase-like protein 2619957 4279102 Sfri_2190 Shewanella frigidimarina NCIMB 400 alpha-L-glutamate ligase-like protein YP_750874.1 2619001 D 318167 CDS YP_750875.1 114563362 4279103 2619920..2621722 1 NC_008345.1 KEGG: son:SO2437 hypothetical protein; hypothetical protein 2621722 4279103 Sfri_2191 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750875.1 2619920 D 318167 CDS YP_750876.1 114563363 4279104 2621700..2622830 1 NC_008345.1 KEGG: vvy:VVA0454 hypothetical protein; hypothetical protein 2622830 4279104 Sfri_2192 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750876.1 2621700 D 318167 CDS YP_750877.1 114563364 4279105 2622937..2623836 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2438 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 2623836 4279105 Sfri_2193 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_750877.1 2622937 D 318167 CDS YP_750878.1 114563365 4279106 complement(2624398..2625681) 1 NC_008345.1 KEGG: son:SO2439 SrpA-related protein; hypothetical protein 2625681 4279106 Sfri_2194 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750878.1 2624398 R 318167 CDS YP_750879.1 114563366 4279107 complement(2625684..2625971) 1 NC_008345.1 KEGG: son:SO2439.2 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 2625971 4279107 Sfri_2195 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis protein YP_750879.1 2625684 R 318167 CDS YP_750880.1 114563367 4279108 complement(2626048..2627163) 1 NC_008345.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2627163 thiH 4279108 thiH Shewanella frigidimarina NCIMB 400 thiamine biosynthesis protein ThiH YP_750880.1 2626048 R 318167 CDS YP_750881.1 114563368 4279109 complement(2627165..2627974) 1 NC_008345.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2627974 thiG 4279109 thiG Shewanella frigidimarina NCIMB 400 thiazole synthase YP_750881.1 2627165 R 318167 CDS YP_750882.1 114563369 4279110 complement(2627977..2628204) 1 NC_008345.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: son:SO2442 thiS protein, putative; thiamine biosynthesis protein ThiS 2628204 4279110 Sfri_2198 Shewanella frigidimarina NCIMB 400 thiamine biosynthesis protein ThiS YP_750882.1 2627977 R 318167 CDS YP_750883.1 114563370 4279111 complement(2628191..2628997) 1 NC_008345.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: son:SO2443 thiF protein, putative; UBA/THIF-type NAD/FAD binding protein 2628997 4279111 Sfri_2199 Shewanella frigidimarina NCIMB 400 UBA/THIF-type NAD/FAD binding protein YP_750883.1 2628191 R 318167 CDS YP_750884.1 114563371 4279112 complement(2628994..2630673) 1 NC_008345.1 KEGG: son:SO2444 phosphomethylpyrimidine kinase / thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; thiamine-phosphate pyrophosphorylase 2630673 4279112 Sfri_2200 Shewanella frigidimarina NCIMB 400 thiamine-phosphate pyrophosphorylase YP_750884.1 2628994 R 318167 CDS YP_750885.1 114563372 4279113 complement(2630679..2632679) 1 NC_008345.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2632679 4279113 Sfri_2201 Shewanella frigidimarina NCIMB 400 thiamine biosynthesis protein ThiC YP_750885.1 2630679 R 318167 CDS YP_750886.1 114563373 4279114 2633243..2635387 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4077 TonB-dependent receptor, putative; TonB-dependent receptor 2635387 4279114 Sfri_2202 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor YP_750886.1 2633243 D 318167 CDS YP_750887.1 114563374 4279115 complement(2636489..2637826) 1 NC_008345.1 KEGG: son:SO2557 hypothetical protein; hypothetical protein 2637826 4279115 Sfri_2203 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750887.1 2636489 R 318167 CDS YP_750888.1 114563375 4279116 complement(2637837..2638565) 1 NC_008345.1 KEGG: son:SO2559 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2638565 4279116 Sfri_2204 Shewanella frigidimarina NCIMB 400 DNA polymerase III subunit epsilon YP_750888.1 2637837 R 318167 CDS YP_750889.1 114563376 4279117 2638643..2639116 1 NC_008345.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2639116 rnhA 4279117 rnhA Shewanella frigidimarina NCIMB 400 ribonuclease H YP_750889.1 2638643 D 318167 CDS YP_750890.1 114563377 4279118 complement(2639330..2640109) 1 NC_008345.1 PFAM: Methyltransferase type 11; KEGG: son:SO2562 hypothetical protein; methyltransferase type 11 2640109 4279118 Sfri_2206 Shewanella frigidimarina NCIMB 400 methyltransferase type 11 YP_750890.1 2639330 R 318167 CDS YP_750891.1 114563378 4279119 2640286..2641065 1 NC_008345.1 PFAM: beta-lactamase domain protein; KEGG: vpa:VP2295 putative hydroxyacylglutathione hydrolase GloB; hydroxyacylglutathione hydrolase 2641065 4279119 Sfri_2207 Shewanella frigidimarina NCIMB 400 hydroxyacylglutathione hydrolase YP_750891.1 2640286 D 318167 CDS YP_750892.1 114563379 4279120 2641216..2642769 1 NC_008345.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: son:SO2564 transglycosylase, Slt family; lytic transglycosylase, catalytic 2642769 4279120 Sfri_2208 Shewanella frigidimarina NCIMB 400 lytic transglycosylase, catalytic YP_750892.1 2641216 D 318167 CDS YP_750893.1 114563380 4279121 complement(2643293..2645113) 1 NC_008345.1 PFAM: AsmA family protein; KEGG: son:SO2566 AsmA protein; AsmA family protein 2645113 4279121 Sfri_2209 Shewanella frigidimarina NCIMB 400 AsmA family protein YP_750893.1 2643293 R 318167 CDS YP_750894.1 114563381 4279122 complement(2645139..2645633) 1 NC_008345.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 2645633 4279122 Sfri_2210 Shewanella frigidimarina NCIMB 400 ribonuclease activity regulator protein RraA YP_750894.1 2645139 R 318167 CDS YP_750895.1 114563382 4279123 2645827..2646141 1 NC_008345.1 KEGG: son:SO2569 hypothetical protein; hypothetical protein 2646141 4279123 Sfri_2211 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750895.1 2645827 D 318167 CDS YP_750896.1 114563383 4279124 complement(2646401..2648050) 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: ilo:IL1296 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2648050 4279124 Sfri_2212 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_750896.1 2646401 R 318167 CDS YP_750897.1 114563384 4279125 complement(2648356..2649336) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_A1003 regulatory protein, LysR:LysR, substrate-binding; transcriptional regulator, LysR family protein 2649336 4279125 Sfri_2213 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_750897.1 2648356 R 318167 CDS YP_750898.1 114563385 4279126 2649457..2650677 1 NC_008345.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: ilo:IL1487 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2650677 4279126 Sfri_2214 Shewanella frigidimarina NCIMB 400 acyl-CoA dehydrogenase domain-containing protein YP_750898.1 2649457 D 318167 CDS YP_750899.1 114563386 4279127 2650689..2651519 1 NC_008345.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pst:PSPTO1627 short chain dehydrogenase; short chain dehydrogenase 2651519 4279127 Sfri_2215 Shewanella frigidimarina NCIMB 400 short chain dehydrogenase YP_750899.1 2650689 D 318167 CDS YP_750900.1 114563387 4279128 2651525..2652592 1 NC_008345.1 PFAM: aminoglycoside phosphotransferase; KEGG: ilo:IL1486 predicted aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2652592 4279128 Sfri_2216 Shewanella frigidimarina NCIMB 400 aminoglycoside phosphotransferase YP_750900.1 2651525 D 318167 CDS YP_750901.1 114563388 4279129 2652595..2653302 1 NC_008345.1 PFAM: Phosphoglycerate mutase; KEGG: pae:PA1831 hypothetical protein; phosphoglycerate mutase 2653302 4279129 Sfri_2217 Shewanella frigidimarina NCIMB 400 phosphoglycerate mutase YP_750901.1 2652595 D 318167 CDS YP_750902.1 114563389 4279130 2653387..2654136 1 NC_008345.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1485 short chain dehydrogenase family protein; short chain dehydrogenase 2654136 4279130 Sfri_2218 Shewanella frigidimarina NCIMB 400 short chain dehydrogenase YP_750902.1 2653387 D 318167 CDS YP_750903.1 114563390 4279131 complement(2654221..2654754) 1 NC_008345.1 PFAM: protein of unknown function DUF1379; KEGG: son:SO2591 hypothetical protein; hypothetical protein 2654754 4279131 Sfri_2219 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750903.1 2654221 R 318167 CDS YP_750904.1 114563391 4279132 complement(2654923..2655942) 1 NC_008345.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2655942 4279132 Sfri_2220 Shewanella frigidimarina NCIMB 400 dihydroorotate dehydrogenase 2 YP_750904.1 2654923 R 318167 CDS YP_750905.1 114563392 4279133 complement(2656004..2660851) 1 NC_008345.1 PFAM: NAD-glutamate dehydrogenase; KEGG: son:SO2593 hypothetical protein; NAD-glutamate dehydrogenase 2660851 4279133 Sfri_2221 Shewanella frigidimarina NCIMB 400 NAD-glutamate dehydrogenase YP_750905.1 2656004 R 318167 CDS YP_750906.1 114563393 4279134 complement(2661180..2663486) 1 NC_008345.1 KEGG: son:SO2594 hypothetical protein; hypothetical protein 2663486 4279134 Sfri_2222 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750906.1 2661180 R 318167 CDS YP_750907.1 114563394 4279135 complement(2663536..2664546) 1 NC_008345.1 KEGG: son:SO2595 BNR repeat protein; BNR repeat-containing protein 2664546 4279135 Sfri_2223 Shewanella frigidimarina NCIMB 400 BNR repeat-containing protein YP_750907.1 2663536 R 318167 CDS YP_750908.1 114563395 4279136 complement(2664605..2665969) 1 NC_008345.1 PFAM: protein of unknown function DUF1329; KEGG: son:SO2596 hypothetical protein; hypothetical protein 2665969 4279136 Sfri_2224 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750908.1 2664605 R 318167 CDS YP_750909.1 114563396 4279137 complement(2665983..2668031) 1 NC_008345.1 PFAM: protein of unknown function DUF1302; KEGG: son:SO2597 hypothetical protein; hypothetical protein 2668031 4279137 Sfri_2225 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750909.1 2665983 R 318167 CDS YP_750910.1 114563397 4279138 complement(2668347..2668565) 1 NC_008345.1 KEGG: son:SO2598 hypothetical protein; hypothetical protein 2668565 4279138 Sfri_2226 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750910.1 2668347 R 318167 CDS YP_750911.1 114563398 4279139 complement(2668653..2671214) 1 NC_008345.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO2600 aminopeptidase N; aminopeptidase N 2671214 pepN 4279139 pepN Shewanella frigidimarina NCIMB 400 aminopeptidase N YP_750911.1 2668653 R 318167 CDS YP_750912.1 114563399 4279140 complement(2671345..2673396) 1 NC_008345.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 2673396 4279140 Sfri_2228 Shewanella frigidimarina NCIMB 400 carboxy-terminal protease YP_750912.1 2671345 R 318167 CDS YP_750913.1 114563400 4279141 complement(2673418..2674029) 1 NC_008345.1 affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 2674029 4279141 Sfri_2229 Shewanella frigidimarina NCIMB 400 putative solute/DNA competence effector YP_750913.1 2673418 R 318167 CDS YP_750914.1 114563401 4279142 complement(2674307..2674771) 1 NC_008345.1 KEGG: son:SO2603 GAF domain-containing protein; putative GAF sensor protein 2674771 4279142 Sfri_2230 Shewanella frigidimarina NCIMB 400 putative GAF sensor protein YP_750914.1 2674307 R 318167 CDS YP_750915.1 114563402 4279143 complement(2674815..2675108) 1 NC_008345.1 PFAM: YebG family protein; KEGG: son:SO2604 hypothetical protein; hypothetical protein 2675108 4279143 Sfri_2231 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750915.1 2674815 R 318167 CDS YP_750916.1 114563403 4279144 2675322..2675948 1 NC_008345.1 PFAM: Paraquat-inducible protein A; KEGG: son:SO2604.1 hypothetical protein; paraquat-inducible protein A 2675948 4279144 Sfri_2232 Shewanella frigidimarina NCIMB 400 paraquat-inducible protein A YP_750916.1 2675322 D 318167 CDS YP_750917.1 114563404 4279145 2675941..2676654 1 NC_008345.1 PFAM: Paraquat-inducible protein A; KEGG: ppr:PBPRA1925 hypothetical uncharacterized paraquat-inducible protein A; paraquat-inducible protein A 2676654 4279145 Sfri_2233 Shewanella frigidimarina NCIMB 400 paraquat-inducible protein A YP_750917.1 2675941 D 318167 CDS YP_750918.1 114563405 4279146 2676641..2679286 1 NC_008345.1 PFAM: Mammalian cell entry related domain protein; KEGG: son:SO2606 PqiB family protein; hypothetical protein 2679286 4279146 Sfri_2234 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750918.1 2676641 D 318167 CDS YP_750919.1 114563406 4279147 complement(2679381..2680619) 1 NC_008345.1 PFAM: nucleoside recognition domain protein; KEGG: son:SO2607 spore maturation protein A-related protein; nucleoside recognition domain-containing protein 2680619 4279147 Sfri_2235 Shewanella frigidimarina NCIMB 400 nucleoside recognition domain-containing protein YP_750919.1 2679381 R 318167 CDS YP_750920.1 114563407 4279148 2680732..2682186 1 NC_008345.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2682186 yebU 4279148 yebU Shewanella frigidimarina NCIMB 400 rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_750920.1 2680732 D 318167 CDS YP_750921.1 114563408 4279149 complement(2683056..2683844) 1 NC_008345.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: son:SO2610 hydrolase, TatD family; TatD family hydrolase 2683844 4279149 Sfri_2237 Shewanella frigidimarina NCIMB 400 TatD family hydrolase YP_750921.1 2683056 R 318167 CDS YP_750922.1 114563409 4279150 complement(2683900..2684226) 1 NC_008345.1 KEGG: son:SO2611 type IV pilus biogenesis protein pilZ; type IV pilus biogenesis protein pilZ 2684226 4279150 Sfri_2238 Shewanella frigidimarina NCIMB 400 type IV pilus biogenesis protein pilZ YP_750922.1 2683900 R 318167 CDS YP_750923.1 114563410 4279151 complement(2684278..2685261) 1 NC_008345.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: son:SO2612 DNA polymerase III, delta prime subunit; DNA polymerase III, delta prime subunit 2685261 4279151 Sfri_2239 Shewanella frigidimarina NCIMB 400 DNA polymerase III, delta prime subunit YP_750923.1 2684278 R 318167 CDS YP_750924.1 114563411 4279152 complement(2685290..2685937) 1 NC_008345.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2685937 tmk 4279152 tmk Shewanella frigidimarina NCIMB 400 thymidylate kinase YP_750924.1 2685290 R 318167 CDS YP_750925.1 114563412 4279153 complement(2685934..2686947) 1 NC_008345.1 PFAM: aminodeoxychorismate lyase; KEGG: son:SO2614 conserved hypothetical protein TIGR00247; aminodeoxychorismate lyase 2686947 4279153 Sfri_2241 Shewanella frigidimarina NCIMB 400 aminodeoxychorismate lyase YP_750925.1 2685934 R 318167 CDS YP_750926.1 114563413 4279154 complement(2686944..2687777) 1 NC_008345.1 PFAM: aminotransferase, class IV; KEGG: son:SO2615 4-amino-4-deoxychorismate lyase; aminotransferase, class IV 2687777 4279154 Sfri_2242 Shewanella frigidimarina NCIMB 400 aminotransferase, class IV YP_750926.1 2686944 R 318167 CDS YP_750927.1 114563414 4279155 complement(2687777..2688361) 1 NC_008345.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2688361 dcd 4279155 dcd Shewanella frigidimarina NCIMB 400 deoxycytidine triphosphate deaminase YP_750927.1 2687777 R 318167 CDS YP_750928.1 114563415 4279156 complement(2688385..2689023) 1 NC_008345.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2689023 4279156 Sfri_2244 Shewanella frigidimarina NCIMB 400 uridine kinase YP_750928.1 2688385 R 318167 CDS YP_750929.1 114563416 4279157 complement(2689033..2690148) 1 NC_008345.1 KEGG: son:SO2618 ATP-binding protein, Mrp/Nbp35 family; ATP-binding protein, Mrp/Nbp35 family protein 2690148 4279157 Sfri_2245 Shewanella frigidimarina NCIMB 400 ATP-binding protein, Mrp/Nbp35 family protein YP_750929.1 2689033 R 318167 CDS YP_750930.1 114563417 4279158 2690305..2692356 1 NC_008345.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2692356 metG 4279158 metG Shewanella frigidimarina NCIMB 400 methionyl-tRNA synthetase YP_750930.1 2690305 D 318167 CDS YP_750931.1 114563418 4279159 complement(2692494..2694419) 1 NC_008345.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: vvy:VV2526 putative TrkA family protein; potassium efflux system protein 2694419 4279159 Sfri_2247 Shewanella frigidimarina NCIMB 400 potassium efflux system protein YP_750931.1 2692494 R 318167 CDS YP_750932.1 114563419 4279160 complement(2694515..2695297) 1 NC_008345.1 PFAM: protein of unknown function DUF34; KEGG: son:SO2621 conserved hypothetical protein TIGR00486; hypothetical protein 2695297 4279160 Sfri_2248 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750932.1 2694515 R 318167 CDS YP_750933.1 114563420 4279161 2695694..2696056 1 NC_008345.1 KEGG: ilo:IL1378 hypothetical protein; hypothetical protein 2696056 4279161 Sfri_2249 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750933.1 2695694 D 318167 CDS YP_750934.1 114563421 4279162 complement(2696180..2696674) 1 NC_008345.1 PFAM: 17 kDa surface antigen; KEGG: son:SO2622 hypothetical protein; 17 kDa surface antigen 2696674 4279162 Sfri_2250 Shewanella frigidimarina NCIMB 400 17 kDa surface antigen YP_750934.1 2696180 R 318167 CDS YP_750935.1 114563422 4279163 2696721..2697428 1 NC_008345.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2697428 aat 4279163 aat Shewanella frigidimarina NCIMB 400 leucyl/phenylalanyl-tRNA--protein transferase YP_750935.1 2696721 D 318167 CDS YP_750936.1 114563423 4279164 2697418..2698137 1 NC_008345.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2698137 4279164 Sfri_2252 Shewanella frigidimarina NCIMB 400 arginyl-tRNA-protein transferase YP_750936.1 2697418 D 318167 CDS YP_750937.1 114563424 4279165 2698217..2698435 1 NC_008345.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2698435 infA 4279165 infA Shewanella frigidimarina NCIMB 400 translation initiation factor IF-1 YP_750937.1 2698217 D 318167 CDS YP_750938.1 114563425 4279166 complement(2698834..2701092) 1 NC_008345.1 KEGG: son:SO2626 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2701092 4279166 Sfri_2254 Shewanella frigidimarina NCIMB 400 ATP-dependent Clp protease ATP-binding protein ClpA YP_750938.1 2698834 R 318167 CDS YP_750939.1 114563426 4279167 complement(2701136..2701444) 1 NC_008345.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2701444 clpS 4279167 clpS Shewanella frigidimarina NCIMB 400 ATP-dependent Clp protease adaptor protein ClpS YP_750939.1 2701136 R 318167 CDS YP_750940.1 114563427 4279168 2701641..2701847 1 NC_008345.1 KEGG: son:SO2628 stress response protein CspD; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 2701847 4279168 Sfri_2256 Shewanella frigidimarina NCIMB 400 cold-shock DNA-binding domain-containing protein YP_750940.1 2701641 D 318167 CDS YP_750941.1 114563428 4279169 complement(2702003..2704228) 1 NC_008345.1 KEGG: son:SO2629 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase 2704228 4279169 Sfri_2257 Shewanella frigidimarina NCIMB 400 isocitrate dehydrogenase YP_750941.1 2702003 R 318167 CDS YP_750942.1 114563429 4279170 2704610..2705317 1 NC_008345.1 KEGG: pha:PSHAa1688 ribosomal large subunit pseudouridine synthase E (pseudouridylate synthase) (uracil hydrolyase); TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; pseudouridine synthase, Rsu 2705317 4279170 Sfri_2258 Shewanella frigidimarina NCIMB 400 pseudouridine synthase, Rsu YP_750942.1 2704610 D 318167 CDS YP_750943.1 114563430 4279171 2705350..2705823 1 NC_008345.1 PFAM: NUDIX hydrolase; KEGG: son:SO2631 MutT/nudix family protein; NUDIX hydrolase 2705823 4279171 Sfri_2259 Shewanella frigidimarina NCIMB 400 NUDIX hydrolase YP_750943.1 2705350 D 318167 CDS YP_750944.1 114563431 4279172 2706082..2707200 1 NC_008345.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2707200 mnmA 4279172 mnmA Shewanella frigidimarina NCIMB 400 tRNA-specific 2-thiouridylase MnmA YP_750944.1 2706082 D 318167 CDS YP_750945.1 114563432 4279173 2707204..2707836 1 NC_008345.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2707836 4279173 Sfri_2261 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750945.1 2707204 D 318167 CDS YP_750946.1 114563433 4279174 2707876..2709246 1 NC_008345.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2709246 4279174 Sfri_2262 Shewanella frigidimarina NCIMB 400 adenylosuccinate lyase YP_750946.1 2707876 D 318167 CDS YP_750947.1 114563434 4279175 2709340..2710482 1 NC_008345.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: son:SO2636 hypothetical protein; cupin 4 family protein 2710482 4279175 Sfri_2263 Shewanella frigidimarina NCIMB 400 cupin 4 family protein YP_750947.1 2709340 D 318167 CDS YP_750948.1 114563435 4279176 complement(2710628..2711068) 1 NC_008345.1 KEGG: son:SO2637 hypothetical protein; hypothetical protein 2711068 4279176 Sfri_2264 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750948.1 2710628 R 318167 CDS YP_750949.1 114563436 4279177 2711353..2712384 1 NC_008345.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: son:SO2638 leucine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase 2712384 4279177 Sfri_2265 Shewanella frigidimarina NCIMB 400 Glu/Leu/Phe/Val dehydrogenase YP_750949.1 2711353 D 318167 CDS YP_750950.1 114563437 4279178 2712645..2713547 1 NC_008345.1 PFAM: metallophosphoesterase; KEGG: son:SO1239 hypothetical protein; metallophosphoesterase 2713547 4279178 Sfri_2266 Shewanella frigidimarina NCIMB 400 metallophosphoesterase YP_750950.1 2712645 D 318167 CDS YP_750951.1 114563438 4279179 2713561..2715300 1 NC_008345.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO1238 acyltransferase family protein; phospholipid/glycerol acyltransferase 2715300 4279179 Sfri_2267 Shewanella frigidimarina NCIMB 400 phospholipid/glycerol acyltransferase YP_750951.1 2713561 D 318167 CDS YP_750952.1 114563439 4279180 2715407..2715865 1 NC_008345.1 PFAM: CBS domain containing protein; KEGG: son:SO1237 acetoin utilization protein AcuB, putative; signal transduction protein 2715865 4279180 Sfri_2268 Shewanella frigidimarina NCIMB 400 signal transduction protein YP_750952.1 2715407 D 318167 CDS YP_750953.1 114563440 4279181 2716224..2716568 1 NC_008345.1 KEGG: son:SO2639 hypothetical protein; hypothetical protein 2716568 4279181 Sfri_2269 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750953.1 2716224 D 318167 CDS YP_750954.1 114563441 4279182 complement(2716611..2717717) 1 NC_008345.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO4043 TonB domain protein; TonB family protein 2717717 4279182 Sfri_2270 Shewanella frigidimarina NCIMB 400 TonB family protein YP_750954.1 2716611 R 318167 CDS YP_750955.1 114563442 4279183 2717945..2718682 1 NC_008345.1 PFAM: protein of unknown function DUF1538; KEGG: ppr:PBPRA2812 putative PTS system mannose-specific, factor IIC; hypothetical protein 2718682 4279183 Sfri_2271 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750955.1 2717945 D 318167 CDS YP_750956.1 114563443 4279184 2718713..2719480 1 NC_008345.1 PFAM: protein of unknown function DUF1538; KEGG: ppr:PBPRA2811 hypothetical PTS system mannose-specific, factor IIC; hypothetical protein 2719480 4279184 Sfri_2272 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750956.1 2718713 D 318167 CDS YP_750957.1 114563444 4279185 2719484..2719834 1 NC_008345.1 KEGG: vvy:VV0993 putative nitrogen regulatory protein P-II; putative nitrogen regulatory protein P-II 2719834 4279185 Sfri_2273 Shewanella frigidimarina NCIMB 400 putative nitrogen regulatory protein P-II YP_750957.1 2719484 D 318167 CDS YP_750958.1 114563445 4279186 2719831..2720235 1 NC_008345.1 PFAM: CBS domain containing protein; KEGG: ppr:PBPRA2809 hypothetical protein; signal-transduction protein 2720235 4279186 Sfri_2274 Shewanella frigidimarina NCIMB 400 signal-transduction protein YP_750958.1 2719831 D 318167 CDS YP_750959.1 114563446 4279187 complement(2720265..2721134) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppr:PBPRA1401 hypothetical transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 2721134 4279187 Sfri_2275 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_750959.1 2720265 R 318167 CDS YP_750960.1 114563447 4279188 2721375..2721578 1 NC_008345.1 KEGG: ppr:PBPRA1400 hypothetical protein; hypothetical protein 2721578 4279188 Sfri_2276 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750960.1 2721375 D 318167 CDS YP_750961.1 114563448 4279189 2721582..2722619 1 NC_008345.1 PFAM: oxidoreductase domain protein; KEGG: lpn:lpg1321 oxidoreductase; oxidoreductase domain-containing protein 2722619 4279189 Sfri_2277 Shewanella frigidimarina NCIMB 400 oxidoreductase domain-containing protein YP_750961.1 2721582 D 318167 CDS YP_750962.1 114563449 4279190 complement(2722581..2722985) 1 NC_008345.1 PFAM: NUDIX hydrolase; KEGG: son:SO0464 MutT/nudix family protein; NUDIX hydrolase 2722985 4279190 Sfri_2278 Shewanella frigidimarina NCIMB 400 NUDIX hydrolase YP_750962.1 2722581 R 318167 CDS YP_750963.1 114563450 4279191 complement(2723034..2723468) 1 NC_008345.1 KEGG: cps:CPS_3134 hypothetical protein; hypothetical protein 2723468 4279191 Sfri_2279 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750963.1 2723034 R 318167 CDS YP_750964.1 114563451 4279192 2723994..2724470 1 NC_008345.1 hypothetical protein 2724470 4279192 Sfri_2280 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750964.1 2723994 D 318167 CDS YP_750965.1 114563452 4279193 2724467..2724988 1 NC_008345.1 PFAM: cation antiporter; KEGG: rru:Rru_A1641 cation antiporter; cation antiporter 2724988 4279193 Sfri_2281 Shewanella frigidimarina NCIMB 400 cation antiporter YP_750965.1 2724467 D 318167 CDS YP_750966.1 114563453 4279194 2724991..2725272 1 NC_008345.1 PFAM: multiple resistance and pH regulation protein F; KEGG: rru:Rru_A1640 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 2725272 4279194 Sfri_2282 Shewanella frigidimarina NCIMB 400 multiple resistance and pH regulation protein F YP_750966.1 2724991 D 318167 CDS YP_750967.1 114563454 4279195 2725265..2725624 1 NC_008345.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: rru:Rru_A1639 Na+/H+ antiporter subunit; monovalent cation/proton antiporter subunit MnhG/PhaG 2725624 4279195 Sfri_2283 Shewanella frigidimarina NCIMB 400 monovalent cation/proton antiporter subunit MnhG/PhaG YP_750967.1 2725265 D 318167 CDS YP_750968.1 114563455 4279196 2725621..2726601 1 NC_008345.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit B 2726601 4279196 Sfri_2284 Shewanella frigidimarina NCIMB 400 putative monovalent cation/H+ antiporter subunit B YP_750968.1 2725621 D 318167 CDS YP_750969.1 114563456 4279197 2726598..2726957 1 NC_008345.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: rru:Rru_A1636 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase, chain 4L 2726957 4279197 Sfri_2285 Shewanella frigidimarina NCIMB 400 NADH-ubiquinone oxidoreductase, chain 4L YP_750969.1 2726598 D 318167 CDS YP_750970.1 114563457 4279198 2726963..2728276 1 NC_008345.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rba:RB1431 putative multicomponent Na+:H+ antiporter subunit D; NADH dehydrogenase (quinone) 2728276 4279198 Sfri_2286 Shewanella frigidimarina NCIMB 400 NADH dehydrogenase (quinone) YP_750970.1 2726963 D 318167 CDS YP_750971.1 114563458 4279199 2728245..2728454 1 NC_008345.1 KEGG: rba:RB1431 putative multicomponent Na+:H+ antiporter subunit D; putative multicomponent Na+:H+ antiporter subunit D 2728454 4279199 Sfri_2287 Shewanella frigidimarina NCIMB 400 putative multicomponent Na+:H+ antiporter subunit D YP_750971.1 2728245 D 318167 CDS YP_750972.1 114563459 4279200 2728451..2729917 1 NC_008345.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rru:Rru_A1634 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 2729917 4279200 Sfri_2288 Shewanella frigidimarina NCIMB 400 NADH dehydrogenase (quinone) YP_750972.1 2728451 D 318167 CDS YP_750973.1 114563460 4279201 2729919..2730233 1 NC_008345.1 KEGG: rru:Rru_A1633 hypothetical protein; hypothetical protein 2730233 4279201 Sfri_2289 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750973.1 2729919 D 318167 CDS YP_750974.1 114563461 4279202 2730223..2731932 1 NC_008345.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit D 2731932 4279202 Sfri_2290 Shewanella frigidimarina NCIMB 400 putative monovalent cation/H+ antiporter subunit D YP_750974.1 2730223 D 318167 CDS YP_750975.1 114563462 4279203 complement(2732799..2735417) 1 NC_008345.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: noc:Noc_2130 cation transporting ATPase, E1-E2 type; P-type HAD superfamily ATPase 2735417 4279203 Sfri_2291 Shewanella frigidimarina NCIMB 400 P-type HAD superfamily ATPase YP_750975.1 2732799 R 318167 CDS YP_750976.1 114563463 4279204 complement(2735419..2736003) 1 NC_008345.1 PFAM: protein of unknown function DUF125, transmembrane; KEGG: dps:DP2435 hypothetical protein; hypothetical protein 2736003 4279204 Sfri_2292 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750976.1 2735419 R 318167 CDS YP_750977.1 114563464 4279205 complement(2736010..2736279) 1 NC_008345.1 PFAM: protein of unknown function DUF211; KEGG: dps:DP2436 hypothetical protein; hypothetical protein 2736279 4279205 Sfri_2293 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750977.1 2736010 R 318167 CDS YP_750978.1 114563465 4279206 complement(2736878..2737297) 1 NC_008345.1 PFAM: regulatory protein, MarR; KEGG: son:SO2640 transcriptional regulator, MarR family; transcriptional regulator, MarR family protein 2737297 4279206 Sfri_2294 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MarR family protein YP_750978.1 2736878 R 318167 CDS YP_750979.1 114563466 4279207 complement(2737576..2738046) 1 NC_008345.1 KEGG: son:SO2642 hypothetical protein; hypothetical protein 2738046 4279207 Sfri_2295 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750979.1 2737576 R 318167 CDS YP_750980.1 114563467 4279208 complement(2738056..2741127) 1 NC_008345.1 PFAM: FAD linked oxidase domain protein; KEGG: son:SO2643 oxidoreductase, FAD-binding, putative; FAD linked oxidase domain-containing protein 2741127 4279208 Sfri_2296 Shewanella frigidimarina NCIMB 400 FAD linked oxidase domain-containing protein YP_750980.1 2738056 R 318167 CDS YP_750981.1 114563468 4279209 complement(2741234..2743660) 1 NC_008345.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2743660 4279209 Sfri_2297 Shewanella frigidimarina NCIMB 400 phosphoenolpyruvate synthase YP_750981.1 2741234 R 318167 CDS YP_750982.1 114563469 4279210 2743730..2744542 1 NC_008345.1 PFAM: protein of unknown function DUF299; KEGG: son:SO2645 hypothetical protein; hypothetical protein 2744542 4279210 Sfri_2298 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750982.1 2743730 D 318167 CDS YP_750983.1 114563470 4279211 2744749..2745813 1 NC_008345.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 2745813 4279211 Sfri_2299 Shewanella frigidimarina NCIMB 400 phospho-2-dehydro-3-deoxyheptonate aldolase YP_750983.1 2744749 D 318167 CDS YP_750984.1 114563471 4279212 complement(2745958..2747181) 1 NC_008345.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO1387 HD domain protein; metal dependent phosphohydrolase 2747181 4279212 Sfri_2300 Shewanella frigidimarina NCIMB 400 metal dependent phosphohydrolase YP_750984.1 2745958 R 318167 CDS YP_750985.1 114563472 4279213 2747574..2748290 1 NC_008345.1 PFAM: protein of unknown function DUF541; KEGG: ilo:IL1781 hypothetical protein; hypothetical protein 2748290 4279213 Sfri_2301 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750985.1 2747574 D 318167 CDS YP_750986.1 114563473 4279214 2748295..2748852 1 NC_008345.1 PFAM: Phosphoglycerate mutase; KEGG: cps:CPS_0333 hypothetical protein; putative phosphohistidine phosphatase, SixA 2748852 4279214 Sfri_2302 Shewanella frigidimarina NCIMB 400 putative phosphohistidine phosphatase, SixA YP_750986.1 2748295 D 318167 CDS YP_750987.1 114563474 4279215 2748934..2749200 1 NC_008345.1 transcriptional antiterminator Rof 2749200 4279215 Sfri_2303 Shewanella frigidimarina NCIMB 400 transcriptional antiterminator Rof YP_750987.1 2748934 D 318167 CDS YP_750988.1 114563475 4279216 2749369..2749806 1 NC_008345.1 PFAM: thioesterase superfamily protein; KEGG: son:SO2647 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 2749806 4279216 Sfri_2304 Shewanella frigidimarina NCIMB 400 thioesterase superfamily protein YP_750988.1 2749369 D 318167 CDS YP_750989.1 114563476 4279217 2749990..2750652 1 NC_008345.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO2648 DNA-binding response regulator, LuxR family; two component transcriptional regulator, LuxR family protein 2750652 4279217 Sfri_2305 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, LuxR family protein YP_750989.1 2749990 D 318167 CDS YP_750990.1 114563477 4279218 2750652..2751266 1 NC_008345.1 PFAM: protein of unknown function DUF938; KEGG: son:SO2050 hypothetical protein; hypothetical protein 2751266 4279218 Sfri_2306 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750990.1 2750652 D 318167 CDS YP_750991.1 114563478 4279219 2751550..2752395 1 NC_008345.1 PFAM: Aldose 1-epimerase; KEGG: son:SO2769 hypothetical protein; aldose 1-epimerase 2752395 4279219 Sfri_2307 Shewanella frigidimarina NCIMB 400 aldose 1-epimerase YP_750991.1 2751550 D 318167 CDS YP_750992.1 114563479 4279220 complement(2752590..2752763) 1 NC_008345.1 KEGG: son:SO4430 hypothetical protein; hypothetical protein 2752763 4279220 Sfri_2308 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750992.1 2752590 R 318167 CDS YP_750993.1 114563480 4279221 complement(2752962..2754680) 1 NC_008345.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 2754680 ushA 4279221 ushA Shewanella frigidimarina NCIMB 400 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic YP_750993.1 2752962 R 318167 CDS YP_750994.1 114563481 4279222 complement(2754992..2755660) 1 NC_008345.1 PFAM: phospholipase/Carboxylesterase; KEGG: son:SO1999 phospholipase/carboxylesterase family protein; carboxylesterase 2755660 4279222 Sfri_2310 Shewanella frigidimarina NCIMB 400 carboxylesterase YP_750994.1 2754992 R 318167 CDS YP_750995.1 114563482 4279223 complement(2755791..2756018) 1 NC_008345.1 KEGG: son:SO1998 hypothetical protein; hypothetical protein 2756018 4279223 Sfri_2311 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750995.1 2755791 R 318167 CDS YP_750996.1 114563483 4279224 complement(2756118..2756600) 1 NC_008345.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1995 peptidyl-prolyl cis-trans isomerase, FkbP family; peptidylprolyl isomerase, FKBP-type 2756600 4279224 Sfri_2312 Shewanella frigidimarina NCIMB 400 peptidylprolyl isomerase, FKBP-type YP_750996.1 2756118 R 318167 CDS YP_750997.1 114563484 4279225 complement(2756685..2757932) 1 NC_008345.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO1994 membrane-bound lytic transglycolase-related protein; lytic murein transglycosylase 2757932 4279225 Sfri_2313 Shewanella frigidimarina NCIMB 400 lytic murein transglycosylase YP_750997.1 2756685 R 318167 CDS YP_750998.1 114563485 4279226 2758384..2758791 1 NC_008345.1 KEGG: son:SO1991 hypothetical protein; hypothetical protein 2758791 4279226 Sfri_2314 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750998.1 2758384 D 318167 CDS YP_750999.1 114563486 4279227 2758856..2759515 1 NC_008345.1 KEGG: son:SO1990 hypothetical protein; hypothetical protein 2759515 4279227 Sfri_2315 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_750999.1 2758856 D 318167 CDS YP_751000.1 114563487 4279228 complement(2759541..2760482) 1 NC_008345.1 PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO1989 chemotaxis protein CheV; response regulator receiver modulated CheW protein 2760482 4279228 Sfri_2316 Shewanella frigidimarina NCIMB 400 response regulator receiver modulated CheW protein YP_751000.1 2759541 R 318167 CDS YP_751001.1 114563488 4279229 2760998..2761588 1 NC_008345.1 SMART: peptidase S16, lon domain protein; KEGG: son:SO1987 ATP-dependent protease La (LON) domain protein; peptidase S16, lon domain-containing protein 2761588 4279229 Sfri_2317 Shewanella frigidimarina NCIMB 400 peptidase S16, lon domain-containing protein YP_751001.1 2760998 D 318167 CDS YP_751002.1 114563489 4279230 2761726..2762388 1 NC_008345.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO1986 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 2762388 4279230 Sfri_2318 Shewanella frigidimarina NCIMB 400 ECF subfamily RNA polymerase sigma-24 factor YP_751002.1 2761726 D 318167 CDS YP_751003.1 114563490 4279231 2762381..2763067 1 NC_008345.1 TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: son:SO1985 transcriptional activator, putative; anti-ECFsigma factor ChrR 2763067 4279231 Sfri_2319 Shewanella frigidimarina NCIMB 400 anti-ECFsigma factor ChrR YP_751003.1 2762381 D 318167 CDS YP_751004.1 114563491 4279232 2763749..2763922 1 NC_008345.1 hypothetical protein 2763922 4279232 Sfri_2320 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751004.1 2763749 D 318167 CDS YP_751005.1 114563492 4279233 complement(2764165..2765136) 1 NC_008345.1 KEGG: son:SO1978 hypothetical protein; hypothetical protein 2765136 4279233 Sfri_2321 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751005.1 2764165 R 318167 CDS YP_751006.1 114563493 4279234 2765334..2765747 1 NC_008345.1 PFAM: protein of unknown function DUF307; KEGG: son:SO1977 hypothetical protein; hypothetical protein 2765747 4279234 Sfri_2322 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751006.1 2765334 D 318167 CDS YP_751007.1 114563494 4279235 2765904..2766371 1 NC_008345.1 PFAM: protein of unknown function DUF55; KEGG: son:SO1969 hypothetical protein; hypothetical protein 2766371 4279235 Sfri_2323 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751007.1 2765904 D 318167 CDS YP_751008.1 114563495 4279236 complement(2766553..2767341) 1 NC_008345.1 PFAM: protein of unknown function DUF124; KEGG: son:SO1966 conserved hypothetical protein TIGR00266; hypothetical protein 2767341 4279236 Sfri_2324 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751008.1 2766553 R 318167 CDS YP_751009.1 114563496 4279237 complement(2767518..2768447) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1965 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 2768447 4279237 Sfri_2325 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_751009.1 2767518 R 318167 CDS YP_751010.1 114563497 4279238 2768667..2769827 1 NC_008345.1 PFAM: homogentisate 1,2-dioxygenase; KEGG: son:SO1963 homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygenase 2769827 4279238 Sfri_2326 Shewanella frigidimarina NCIMB 400 homogentisate 1,2-dioxygenase YP_751010.1 2768667 D 318167 CDS YP_751011.1 114563498 4279239 2769898..2770938 1 NC_008345.1 KEGG: son:SO1962 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2770938 4279239 Sfri_2327 Shewanella frigidimarina NCIMB 400 4-hydroxyphenylpyruvate dioxygenase YP_751011.1 2769898 D 318167 CDS YP_751012.1 114563499 4279240 2771042..2771659 1 NC_008345.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO1954 transporter, LysE family; lysine exporter protein LysE/YggA 2771659 4279240 Sfri_2328 Shewanella frigidimarina NCIMB 400 lysine exporter protein LysE/YggA YP_751012.1 2771042 D 318167 CDS YP_751013.1 114563500 4279241 complement(2771701..2772879) 1 NC_008345.1 PFAM: protein of unknown function DUF482; KEGG: son:SO1953 hypothetical protein; hypothetical protein 2772879 4279241 Sfri_2329 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751013.1 2771701 R 318167 CDS YP_751014.1 114563501 4279242 2772992..2774743 1 NC_008345.1 KEGG: son:SO1952 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2774743 4279242 Sfri_2330 Shewanella frigidimarina NCIMB 400 gamma-glutamyltransferase YP_751014.1 2772992 D 318167 CDS YP_751015.1 114563502 4279243 2775201..2776817 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: hch:HCH_06069 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2776817 4279243 Sfri_2331 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_751015.1 2775201 D 318167 CDS YP_751016.1 114563503 4279244 2776896..2778119 1 NC_008345.1 KEGG: vvu:VV12353 hypothetical protein; hypothetical protein 2778119 4279244 Sfri_2332 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751016.1 2776896 D 318167 CDS YP_751017.1 114563504 4279245 2778131..2778526 1 NC_008345.1 KEGG: sde:Sde_0340 hypothetical protein; hypothetical protein 2778526 4279245 Sfri_2333 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751017.1 2778131 D 318167 CDS YP_751018.1 114563505 4279246 2778764..2780947 1 NC_008345.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: bfs:BF3021 putative peptidyl-dipeptidase; peptidyl-dipeptidase Dcp 2780947 4279246 Sfri_2334 Shewanella frigidimarina NCIMB 400 peptidyl-dipeptidase Dcp YP_751018.1 2778764 D 318167 CDS YP_751019.1 114563506 4279247 2781380..2783479 1 NC_008345.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein 2783479 cpdB 4279247 cpdB Shewanella frigidimarina NCIMB 400 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein YP_751019.1 2781380 D 318167 CDS YP_751020.1 114563507 4279248 complement(2783606..2784091) 1 NC_008345.1 KEGG: son:SO1939 hypothetical protein; hypothetical protein 2784091 4279248 Sfri_2336 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751020.1 2783606 R 318167 CDS YP_751021.1 114563508 4279249 complement(2784084..2784806) 1 NC_008345.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2784806 4279249 Sfri_2337 Shewanella frigidimarina NCIMB 400 NAD-dependent deacetylase YP_751021.1 2784084 R 318167 CDS YP_751022.1 114563509 4279250 2785087..2785596 1 NC_008345.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 2785596 fur 4279250 fur Shewanella frigidimarina NCIMB 400 ferric uptake regulator YP_751022.1 2785087 D 318167 CDS YP_751023.1 114563510 4279251 complement(2785678..2786604) 1 NC_008345.1 PFAM: Auxin Efflux Carrier; KEGG: pha:PSHAa0980 hypothetical protein; auxin efflux carrier 2786604 4279251 Sfri_2339 Shewanella frigidimarina NCIMB 400 auxin efflux carrier YP_751023.1 2785678 R 318167 CDS YP_751024.1 114563511 4279252 complement(2786728..2787600) 1 NC_008345.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: son:SO1933 succinyl-CoA synthetase alpha chain; succinyl-CoA synthetase, alpha subunit 2787600 4279252 Sfri_2340 Shewanella frigidimarina NCIMB 400 succinyl-CoA synthetase, alpha subunit YP_751024.1 2786728 R 318167 CDS YP_751025.1 114563512 4279253 complement(2787600..2788766) 1 NC_008345.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2788766 sucC 4279253 sucC Shewanella frigidimarina NCIMB 400 succinyl-CoA synthetase subunit beta YP_751025.1 2787600 R 318167 CDS YP_751026.1 114563513 4279254 complement(2788842..2790038) 1 NC_008345.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: son:SO1931 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase); 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 2790038 4279254 Sfri_2342 Shewanella frigidimarina NCIMB 400 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase YP_751026.1 2788842 R 318167 CDS YP_751027.1 114563514 4279255 complement(2790067..2792889) 1 NC_008345.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2792889 sucA 4279255 sucA Shewanella frigidimarina NCIMB 400 2-oxoglutarate dehydrogenase E1 component YP_751027.1 2790067 R 318167 CDS YP_751028.1 114563515 4279256 complement(2793092..2793799) 1 NC_008345.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 2793799 sdhB 4279256 sdhB Shewanella frigidimarina NCIMB 400 succinate dehydrogenase iron-sulfur subunit YP_751028.1 2793092 R 318167 CDS YP_751029.1 114563516 4279257 complement(2793816..2795582) 1 NC_008345.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 2795582 sdhA 4279257 sdhA Shewanella frigidimarina NCIMB 400 succinate dehydrogenase flavoprotein subunit YP_751029.1 2793816 R 318167 CDS YP_751030.1 114563517 4279258 complement(2795583..2795930) 1 NC_008345.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: son:SO1927.1 hypothetical succinate dehydrogenase, hydrophobic subunit; succinate dehydrogenase, cytochrome b subunit 2795930 4279258 Sfri_2346 Shewanella frigidimarina NCIMB 400 succinate dehydrogenase, cytochrome b subunit YP_751030.1 2795583 R 318167 CDS YP_751031.1 114563518 4279259 complement(2795924..2796319) 1 NC_008345.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: son:SO1927 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase, cytochrome b subunit 2796319 4279259 Sfri_2347 Shewanella frigidimarina NCIMB 400 succinate dehydrogenase, cytochrome b subunit YP_751031.1 2795924 R 318167 CDS YP_751032.1 114563519 4279260 2796729..2798015 1 NC_008345.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 2798015 gltA 4279260 gltA Shewanella frigidimarina NCIMB 400 type II citrate synthase YP_751032.1 2796729 D 318167 CDS YP_751033.1 114563520 4279261 complement(2798694..2799131) 1 NC_008345.1 hypothetical protein 2799131 4279261 Sfri_2349 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751033.1 2798694 R 318167 CDS YP_751034.1 114563521 4279262 complement(2799118..2799960) 1 NC_008345.1 KEGG: eli:ELI_07940 putative bacteriophage-acquired protein; hypothetical protein 2799960 4279262 Sfri_2350 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751034.1 2799118 R 318167 CDS YP_751035.1 114563522 4279263 complement(2800994..2801359) 1 NC_008345.1 KEGG: vpa:VP1109 hypothetical protein; hypothetical protein 2801359 4279263 Sfri_2352 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751035.1 2800994 R 318167 CDS YP_751036.1 114563523 4279264 complement(2801437..2801793) 1 NC_008345.1 hypothetical protein 2801793 4279264 Sfri_2353 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751036.1 2801437 R 318167 CDS YP_751037.1 114563524 4279265 complement(2801936..2802295) 1 NC_008345.1 hypothetical protein 2802295 4279265 Sfri_2354 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751037.1 2801936 R 318167 CDS YP_751038.1 114563525 4279266 complement(2802296..2806780) 1 NC_008345.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: ppr:PBPRA0678 hypothetical nucleotidyltransferase; YD repeat-containing protein 2806780 4279266 Sfri_2355 Shewanella frigidimarina NCIMB 400 YD repeat-containing protein YP_751038.1 2802296 R 318167 CDS YP_751039.1 114563526 4279267 complement(2806787..2807731) 1 NC_008345.1 KEGG: ppr:PBPRA0677 hypothetical protein; hypothetical protein 2807731 4279267 Sfri_2356 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751039.1 2806787 R 318167 CDS YP_751040.1 114563527 4279268 complement(2807728..2808828) 1 NC_008345.1 hypothetical protein 2808828 4279268 Sfri_2357 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751040.1 2807728 R 318167 CDS YP_751041.1 114563528 4279269 complement(2808850..2809140) 1 NC_008345.1 PFAM: PAAR repeat-containing protein; KEGG: vpa:VPA1025 hypothetical protein; PAAR repeat-containing protein 2809140 4279269 Sfri_2358 Shewanella frigidimarina NCIMB 400 PAAR repeat-containing protein YP_751041.1 2808850 R 318167 CDS YP_751042.1 114563529 4279270 complement(2809183..2809536) 1 NC_008345.1 hypothetical protein 2809536 4279270 Sfri_2359 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751042.1 2809183 R 318167 CDS YP_751043.1 114563530 4279271 complement(2809539..2811395) 1 NC_008345.1 PFAM: Rhs element Vgr protein; KEGG: ppr:PBPRA0675 hypothetical protein; Rhs element Vgr protein 2811395 4279271 Sfri_2360 Shewanella frigidimarina NCIMB 400 Rhs element Vgr protein YP_751043.1 2809539 R 318167 CDS YP_751044.1 114563531 4279272 complement(2811466..2811945) 1 NC_008345.1 PFAM: protein of unknown function DUF796; KEGG: vpa:VPA1027 hypothetical protein; hypothetical protein 2811945 4279272 Sfri_2361 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751044.1 2811466 R 318167 CDS YP_751045.1 114563532 4279273 complement(2812315..2814921) 1 NC_008345.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: ppr:PBPRA0673 putative ATPase with chaperone activity; ATPase 2814921 4279273 Sfri_2362 Shewanella frigidimarina NCIMB 400 ATPase YP_751045.1 2812315 R 318167 CDS YP_751046.1 114563533 4279274 complement(2814941..2815948) 1 NC_008345.1 PFAM: protein of unknown function DUF1305; KEGG: vpa:VPA1029 hypothetical protein; hypothetical protein 2815948 4279274 Sfri_2363 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751046.1 2814941 R 318167 CDS YP_751047.1 114563534 4279275 complement(2815945..2817774) 1 NC_008345.1 PFAM: protein of unknown function DUF879; KEGG: ppr:PBPRA0671 hypothetical protein; hypothetical protein 2817774 4279275 Sfri_2364 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751047.1 2815945 R 318167 CDS YP_751048.1 114563535 4279276 complement(2817771..2818235) 1 NC_008345.1 PFAM: protein of unknown function DUF1316; KEGG: vvy:VVA0983 hypothetical protein; hypothetical protein 2818235 4279276 Sfri_2365 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751048.1 2817771 R 318167 CDS YP_751049.1 114563536 4279277 complement(2818268..2819056) 1 NC_008345.1 PFAM: virulence protein, SciE type; KEGG: ppr:PBPRA0669 hypothetical protein; virulence protein, SciE type 2819056 4279277 Sfri_2366 Shewanella frigidimarina NCIMB 400 virulence protein, SciE type YP_751049.1 2818268 R 318167 CDS YP_751050.1 114563537 4279278 complement(2819071..2820606) 1 NC_008345.1 PFAM: protein of unknown function DUF877; KEGG: ppr:PBPRA0668 hypothetical protein; hypothetical protein 2820606 4279278 Sfri_2367 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751050.1 2819071 R 318167 CDS YP_751051.1 114563538 4279279 complement(2820658..2822151) 1 NC_008345.1 PFAM: protein of unknown function DUF877; KEGG: ppr:PBPRA0667 hypothetical protein; hypothetical protein 2822151 4279279 Sfri_2368 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751051.1 2820658 R 318167 CDS YP_751052.1 114563539 4279280 complement(2822151..2822651) 1 NC_008345.1 PFAM: Uncharacterised conserved protein UCP028301; KEGG: vpa:VPA1035 hypothetical protein; hypothetical protein 2822651 4279280 Sfri_2369 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751052.1 2822151 R 318167 CDS YP_751053.1 114563540 4279281 complement(2822693..2823799) 1 NC_008345.1 PFAM: ImpA domain protein; KEGG: ppr:PBPRA0665 hypothetical protein; ImpA domain-containing protein 2823799 4279281 Sfri_2370 Shewanella frigidimarina NCIMB 400 ImpA domain-containing protein YP_751053.1 2822693 R 318167 CDS YP_751054.1 114563541 4279282 complement(2824086..2824853) 1 NC_008345.1 PFAM: protein phosphatase 2C domain protein; KEGG: vvy:VVA0989 probable phosphoprotein phosphatase; protein serine/threonine phosphatase 2824853 4279282 Sfri_2371 Shewanella frigidimarina NCIMB 400 protein serine/threonine phosphatase YP_751054.1 2824086 R 318167 CDS YP_751055.1 114563542 4279283 complement(2824844..2825575) 1 NC_008345.1 KEGG: ppr:PBPRA0663 hypothetical protein; hypothetical protein 2825575 4279283 Sfri_2372 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751055.1 2824844 R 318167 CDS YP_751056.1 114563543 4279284 complement(2825557..2829105) 1 NC_008345.1 PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: ppr:PBPRA0662 hypothetical protein; ImcF domain-containing protein 2829105 4279284 Sfri_2373 Shewanella frigidimarina NCIMB 400 ImcF domain-containing protein YP_751056.1 2825557 R 318167 CDS YP_751057.1 114563544 4279285 complement(2829129..2830418) 1 NC_008345.1 PFAM: OmpA/MotB domain protein; KEGG: ppr:PBPRA0661 hypothetical protein; OmpA/MotB domain-containing protein 2830418 4279285 Sfri_2374 Shewanella frigidimarina NCIMB 400 OmpA/MotB domain-containing protein YP_751057.1 2829129 R 318167 CDS YP_751058.1 114563545 4279286 complement(2830443..2831771) 1 NC_008345.1 PFAM: protein of unknown function DUF876; KEGG: ppr:PBPRA0660 hypothetical protein; hypothetical protein 2831771 4279286 Sfri_2375 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751058.1 2830443 R 318167 CDS YP_751059.1 114563546 4279287 complement(2831796..2832266) 1 NC_008345.1 KEGG: vpa:VPA1042 hypothetical protein; hypothetical protein 2832266 4279287 Sfri_2376 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751059.1 2831796 R 318167 CDS YP_751060.1 114563547 4279288 complement(2832285..2833661) 1 NC_008345.1 PFAM: Forkhead-associated protein; KEGG: ppr:PBPRA0658 FHA domain-containing protein; FHA domain-containing protein 2833661 4279288 Sfri_2377 Shewanella frigidimarina NCIMB 400 FHA domain-containing protein YP_751060.1 2832285 R 318167 CDS YP_751061.1 114563548 4279289 complement(2833694..2835679) 1 NC_008345.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ppr:PBPRA0657 hypothetical serine/threonine protein kinase; serine/threonine protein kinase 2835679 4279289 Sfri_2378 Shewanella frigidimarina NCIMB 400 serine/threonine protein kinase YP_751061.1 2833694 R 318167 CDS YP_751062.1 114563549 4279290 2835999..2836490 1 NC_008345.1 PFAM: OmpA/MotB domain protein; KEGG: pfo:Pfl_1066 OmpA/MotB; OmpA/MotB domain-containing protein 2836490 4279290 Sfri_2379 Shewanella frigidimarina NCIMB 400 OmpA/MotB domain-containing protein YP_751062.1 2835999 D 318167 CDS YP_751063.1 114563550 4279291 complement(2836885..2837727) 1 NC_008345.1 KEGG: son:SO2529 hypothetical protein; hypothetical protein 2837727 4279291 Sfri_2380 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751063.1 2836885 R 318167 CDS YP_751064.1 114563551 4279292 2838049..2839122 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1925 HlyD family secretion protein; RND family efflux transporter MFP subunit 2839122 4279292 Sfri_2381 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_751064.1 2838049 D 318167 CDS YP_751065.1 114563552 4279293 2839135..2842386 1 NC_008345.1 PFAM: acriflavin resistance protein; KEGG: son:SO1924 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 2842386 4279293 Sfri_2382 Shewanella frigidimarina NCIMB 400 acriflavin resistance protein YP_751065.1 2839135 D 318167 CDS YP_751066.1 114563553 4279294 2842383..2845448 1 NC_008345.1 PFAM: acriflavin resistance protein; KEGG: son:SO1923 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 2845448 4279294 Sfri_2383 Shewanella frigidimarina NCIMB 400 acriflavin resistance protein YP_751066.1 2842383 D 318167 CDS YP_751067.1 114563554 4279295 2845678..2846562 1 NC_008345.1 PFAM: beta-lactamase domain protein; KEGG: ilo:IL0617 Zn-dependent hydrolase, glyoxylase family; beta-lactamase domain-containing protein 2846562 4279295 Sfri_2384 Shewanella frigidimarina NCIMB 400 beta-lactamase domain-containing protein YP_751067.1 2845678 D 318167 CDS YP_751068.1 114563555 4279296 complement(2846678..2847409) 1 NC_008345.1 KEGG: hit:NTHI1650 hypothetical protein; Mn2+-dependent serine/threonine protein kinase 2847409 4279296 Sfri_2385 Shewanella frigidimarina NCIMB 400 Mn2+-dependent serine/threonine protein kinase YP_751068.1 2846678 R 318167 CDS YP_751069.1 114563556 4279297 complement(2847796..2847972) 1 NC_008345.1 PFAM: protein of unknown function DUF343; KEGG: son:SO2800 hypothetical protein; hypothetical protein 2847972 4279297 Sfri_2386 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751069.1 2847796 R 318167 CDS YP_751070.1 114563557 4279298 complement(2847962..2848969) 1 NC_008345.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2848969 lpxK 4279298 lpxK Shewanella frigidimarina NCIMB 400 tetraacyldisaccharide 4'-kinase YP_751070.1 2847962 R 318167 CDS YP_751071.1 114563558 4279299 complement(2848986..2850788) 1 NC_008345.1 KEGG: son:SO2802 ABC transporter, ATP-binding protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 2850788 4279299 Sfri_2388 Shewanella frigidimarina NCIMB 400 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_751071.1 2848986 R 318167 CDS YP_751072.1 114563559 4279300 complement(2850826..2853321) 1 NC_008345.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: son:SO2803 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 2853321 4279300 Sfri_2389 Shewanella frigidimarina NCIMB 400 DNA internalization-related competence protein ComEC/Rec2 YP_751072.1 2850826 R 318167 CDS YP_751073.1 114563560 4279301 2853353..2853862 1 NC_008345.1 KEGG: son:SO2804 hypothetical protein; hypothetical protein 2853862 4279301 Sfri_2390 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751073.1 2853353 D 318167 CDS YP_751074.1 114563561 4279302 complement(2853923..2854354) 1 NC_008345.1 PFAM: regulatory protein, MarR; KEGG: vfi:VFA0025 transcriptional regulator, MarR family; transcriptional regulator, MarR family protein 2854354 4279302 Sfri_2391 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MarR family protein YP_751074.1 2853923 R 318167 CDS YP_751075.1 114563562 4279303 2854552..2855346 1 NC_008345.1 PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: pha:PSHAb0539 putative protein involved in iron transport; FAD-binding 9, siderophore-interacting domain-containing protein 2855346 4279303 Sfri_2392 Shewanella frigidimarina NCIMB 400 FAD-binding 9, siderophore-interacting domain-containing protein YP_751075.1 2854552 D 318167 CDS YP_751076.1 114563563 4279304 complement(2855547..2855807) 1 NC_008345.1 KEGG: son:SO1746 hypothetical protein; hypothetical protein 2855807 4279304 Sfri_2393 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751076.1 2855547 R 318167 CDS YP_751077.1 114563564 4279305 complement(2855804..2856400) 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bpm:BURPS1710b_2160 ribosomal-protein-serine acetyltransferase; N-acetyltransferase GCN5 2856400 4279305 Sfri_2394 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_751077.1 2855804 R 318167 CDS YP_751078.1 114563565 4279306 complement(2856410..2857651) 1 NC_008345.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: son:SO2259 lipoprotein releasing system transmembrane protein LolC, putative; lipoprotein releasing system, transmembrane protein, LolC/E family protein 2857651 4279306 Sfri_2395 Shewanella frigidimarina NCIMB 400 lipoprotein releasing system, transmembrane protein, LolC/E family protein YP_751078.1 2856410 R 318167 CDS YP_751079.1 114563566 4279307 complement(2857648..2858367) 1 NC_008345.1 KEGG: son:SO2258 lipoprotein releasing system ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 2858367 4279307 Sfri_2396 Shewanella frigidimarina NCIMB 400 lipoprotein releasing system, ATP-binding protein YP_751079.1 2857648 R 318167 CDS YP_751080.1 114563567 4279308 complement(2858367..2859611) 1 NC_008345.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: son:SO2257 lipoprotein releasing system transmembrane protein LolE; lipoprotein releasing system, transmembrane protein, LolC/E family protein 2859611 4279308 Sfri_2397 Shewanella frigidimarina NCIMB 400 lipoprotein releasing system, transmembrane protein, LolC/E family protein YP_751080.1 2858367 R 318167 CDS YP_751081.1 114563568 4279309 2859769..2860368 1 NC_008345.1 KEGG: son:SO2256 hypothetical protein; hypothetical protein 2860368 4279309 Sfri_2398 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751081.1 2859769 D 318167 CDS YP_751082.1 114563569 4279310 2860423..2863959 1 NC_008345.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO2255 transcription-repair coupling factor; transcription-repair coupling factor 2863959 4279310 Sfri_2399 Shewanella frigidimarina NCIMB 400 transcription-repair coupling factor YP_751082.1 2860423 D 318167 CDS YP_751083.1 114563570 4279311 2863949..2864941 1 NC_008345.1 KEGG: son:SO2254 hypothetical protein; hypothetical protein 2864941 4279311 Sfri_2400 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751083.1 2863949 D 318167 CDS YP_751084.1 114563571 4279312 complement(2865078..2866103) 1 NC_008345.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 2866103 4279312 Sfri_2401 Shewanella frigidimarina NCIMB 400 beta-hexosaminidase YP_751084.1 2865078 R 318167 CDS YP_751085.1 114563572 4279313 2866337..2867713 1 NC_008345.1 KEGG: son:SO2248 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 2867713 4279313 Sfri_2402 Shewanella frigidimarina NCIMB 400 L-serine dehydratase 1 YP_751085.1 2866337 D 318167 CDS YP_751086.1 114563573 4279314 complement(2867923..2868390) 1 NC_008345.1 PFAM: CreA family protein; KEGG: cps:CPS_1436 CreA protein; CreA family protein 2868390 4279314 Sfri_2403 Shewanella frigidimarina NCIMB 400 CreA family protein YP_751086.1 2867923 R 318167 CDS YP_751087.1 114563574 4279315 complement(2868723..2870129) 1 NC_008345.1 KEGG: son:SO2189 conserved hypothetical protein; putative chaperone 2870129 4279315 Sfri_2404 Shewanella frigidimarina NCIMB 400 putative chaperone YP_751087.1 2868723 R 318167 CDS YP_751088.1 114563575 4279316 2870490..2870762 1 NC_008345.1 hypothetical protein 2870762 4279316 Sfri_2405 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751088.1 2870490 D 318167 CDS YP_751089.1 114563576 4279317 complement(2870824..2871156) 1 NC_008345.1 PFAM: conserved hypothetical protein 103; KEGG: son:SO2014 conserved hypothetical protein TIGR00103; hypothetical protein 2871156 4279317 Sfri_2406 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751089.1 2870824 R 318167 CDS YP_751090.1 114563577 4279318 complement(2871300..2874119) 1 NC_008345.1 KEGG: son:SO2013 DNA polymerase III, gamma and tau subunits; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 2874119 4279318 Sfri_2407 Shewanella frigidimarina NCIMB 400 DNA polymerase III subunits gamma and tau YP_751090.1 2871300 R 318167 CDS YP_751091.1 114563578 4279319 complement(2874270..2874818) 1 NC_008345.1 KEGG: son:SO2012 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; adenine phosphoribosyltransferase 2874818 4279319 Sfri_2408 Shewanella frigidimarina NCIMB 400 adenine phosphoribosyltransferase YP_751091.1 2874270 R 318167 CDS YP_751092.1 114563579 4279320 complement(2874956..2875321) 1 NC_008345.1 PFAM: protein of unknown function DUF454; KEGG: son:SO2011 hypothetical protein; hypothetical protein 2875321 4279320 Sfri_2409 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751092.1 2874956 R 318167 CDS YP_751093.1 114563580 4279321 complement(2875405..2875524) 1 NC_008345.1 KEGG: son:SO2010 hypothetical protein; hypothetical protein 2875524 4279321 Sfri_2410 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751093.1 2875405 R 318167 CDS YP_751094.1 114563581 4279322 complement(2875698..2876459) 1 NC_008345.1 KEGG: son:SO2009 hypothetical protein; hypothetical protein 2876459 4279322 Sfri_2411 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751094.1 2875698 R 318167 CDS YP_751095.1 114563582 4279323 complement(2876459..2877322) 1 NC_008345.1 PFAM: protein of unknown function DUF692; KEGG: son:SO2008 hypothetical protein; hypothetical protein 2877322 4279323 Sfri_2412 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751095.1 2876459 R 318167 CDS YP_751096.1 114563583 4279324 complement(2877423..2877851) 1 NC_008345.1 KEGG: son:SO2007 hypothetical protein; hypothetical protein 2877851 4279324 Sfri_2413 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751096.1 2877423 R 318167 CDS YP_751097.1 114563584 4279325 2878179..2879123 1 NC_008345.1 PFAM: dihydrouridine synthase, DuS; KEGG: son:SO2006 NifR3/Smm1 family protein; dihydrouridine synthase, DuS 2879123 4279325 Sfri_2414 Shewanella frigidimarina NCIMB 400 dihydrouridine synthase, DuS YP_751097.1 2878179 D 318167 CDS YP_751098.1 114563585 4279326 2879456..2879827 1 NC_008345.1 KEGG: son:SO2005 DksA-type zinc finger protein; transcriptional regulators, TraR/DksA family protein 2879827 4279326 Sfri_2415 Shewanella frigidimarina NCIMB 400 transcriptional regulators, TraR/DksA family protein YP_751098.1 2879456 D 318167 CDS YP_751099.1 114563586 4279327 complement(2879956..2882484) 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2427 TonB-dependent receptor, putative; TonB-dependent receptor 2882484 4279327 Sfri_2416 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor YP_751099.1 2879956 R 318167 CDS YP_751100.1 114563587 4279328 complement(2883277..2883771) 1 NC_008345.1 PFAM: nucleoside diphosphate kinase; KEGG: pha:PSHAb0142 nucleoside diphosphate kinase; nucleoside-diphosphate kinase 2883771 4279328 Sfri_2417 Shewanella frigidimarina NCIMB 400 nucleoside-diphosphate kinase YP_751100.1 2883277 R 318167 CDS YP_751101.1 114563588 4279329 complement(2883874..2884770) 1 NC_008345.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO2270 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 2884770 4279329 Sfri_2418 Shewanella frigidimarina NCIMB 400 alpha-L-glutamate ligase YP_751101.1 2883874 R 318167 CDS YP_751102.1 114563589 4279330 complement(2884943..2885278) 1 NC_008345.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: son:SO2269 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S type, ISC system 2885278 4279330 Sfri_2419 Shewanella frigidimarina NCIMB 400 ferredoxin, 2Fe-2S type, ISC system YP_751102.1 2884943 R 318167 CDS YP_751103.1 114563590 4279331 complement(2885287..2887146) 1 NC_008345.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2887146 hscA 4279331 hscA Shewanella frigidimarina NCIMB 400 chaperone protein HscA YP_751103.1 2885287 R 318167 CDS YP_751104.1 114563591 4279332 complement(2887219..2887743) 1 NC_008345.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 2887743 hscB 4279332 hscB Shewanella frigidimarina NCIMB 400 co-chaperone HscB YP_751104.1 2887219 R 318167 CDS YP_751105.1 114563592 4279333 complement(2887800..2888123) 1 NC_008345.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: son:SO2266 HesB/YadR/YfhF family protein; iron-sulfur cluster assembly protein IscA 2888123 4279333 Sfri_2422 Shewanella frigidimarina NCIMB 400 iron-sulfur cluster assembly protein IscA YP_751105.1 2887800 R 318167 CDS YP_751106.1 114563593 4279334 complement(2888138..2888521) 1 NC_008345.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: son:SO2265 NifU family protein; scaffold protein 2888521 4279334 Sfri_2423 Shewanella frigidimarina NCIMB 400 scaffold protein YP_751106.1 2888138 R 318167 CDS YP_751107.1 114563594 4279335 complement(2888594..2889808) 1 NC_008345.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 2889808 4279335 Sfri_2424 Shewanella frigidimarina NCIMB 400 cysteine desulfurase YP_751107.1 2888594 R 318167 CDS YP_751108.1 114563595 4279336 complement(2889890..2890351) 1 NC_008345.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: son:SO2263 Rrf2 family protein; BadM/Rrf2 family transcriptional regulator 2890351 4279336 Sfri_2425 Shewanella frigidimarina NCIMB 400 BadM/Rrf2 family transcriptional regulator YP_751108.1 2889890 R 318167 CDS YP_751109.1 114563596 4279337 complement(2890584..2891405) 1 NC_008345.1 TIGRFAM: serine O-acetyltransferase; KEGG: son:SO2262 serine acetyltransferase; serine O-acetyltransferase 2891405 4279337 Sfri_2426 Shewanella frigidimarina NCIMB 400 serine O-acetyltransferase YP_751109.1 2890584 R 318167 CDS YP_751110.1 114563597 4279338 complement(2891424..2892146) 1 NC_008345.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO2261 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase 2892146 4279338 Sfri_2427 Shewanella frigidimarina NCIMB 400 RNA methyltransferase YP_751110.1 2891424 R 318167 CDS YP_751111.1 114563598 4279339 2892297..2893100 1 NC_008345.1 PFAM: inositol monophosphatase; KEGG: son:SO2260 extragenic suppressor protein SuhB; inositol monophosphatase 2893100 4279339 Sfri_2428 Shewanella frigidimarina NCIMB 400 inositol monophosphatase YP_751111.1 2892297 D 318167 CDS YP_751112.1 114563599 4279340 2893359..2893775 1 NC_008345.1 PFAM: phosphate-starvation-inducible E; KEGG: son:SO2806 hypothetical protein; phosphate-starvation-inducible E 2893775 4279340 Sfri_2429 Shewanella frigidimarina NCIMB 400 phosphate-starvation-inducible E YP_751112.1 2893359 D 318167 CDS YP_751113.1 114563600 4279341 2894035..2894337 1 NC_008345.1 PFAM: type IV pilus assembly PilZ; KEGG: son:SO2807 hypothetical protein; type IV pilus assembly PilZ 2894337 4279341 Sfri_2430 Shewanella frigidimarina NCIMB 400 type IV pilus assembly PilZ YP_751113.1 2894035 D 318167 CDS YP_751114.1 114563601 4279342 2894440..2895108 1 NC_008345.1 KEGG: son:SO2808 hypothetical protein; hypothetical protein 2895108 4279342 Sfri_2431 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751114.1 2894440 D 318167 CDS YP_751115.1 114563602 4279343 2895095..2895445 1 NC_008345.1 KEGG: son:SO2809 RepA domain protein; RepA domain-containing protein 2895445 4279343 Sfri_2432 Shewanella frigidimarina NCIMB 400 RepA domain-containing protein YP_751115.1 2895095 D 318167 CDS YP_751116.1 114563603 4279344 2895846..2897522 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: son:SO2822 sensor histidine kinase; signal transduction histidine kinase LytS 2897522 4279344 Sfri_2433 Shewanella frigidimarina NCIMB 400 signal transduction histidine kinase LytS YP_751116.1 2895846 D 318167 CDS YP_751117.1 114563604 4279345 2897519..2898229 1 NC_008345.1 unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT 2898229 4279345 Sfri_2434 Shewanella frigidimarina NCIMB 400 putative two-component response-regulatory protein YehT YP_751117.1 2897519 D 318167 CDS YP_751118.1 114563605 4279346 2898404..2899864 1 NC_008345.1 PFAM: carbon starvation protein CstA; KEGG: vpa:VP0540 putative carbon starvation protein A; carbon starvation protein CstA 2899864 4279346 Sfri_2435 Shewanella frigidimarina NCIMB 400 carbon starvation protein CstA YP_751118.1 2898404 D 318167 CDS YP_751119.1 114563606 4279347 2899974..2900366 1 NC_008345.1 KEGG: son:SO2827 hypothetical protein; hypothetical protein 2900366 4279347 Sfri_2436 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751119.1 2899974 D 318167 CDS YP_751120.1 114563607 4279348 complement(2900394..2901323) 1 NC_008345.1 KEGG: son:SO2830 hypothetical protein; hypothetical protein 2901323 4279348 Sfri_2437 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751120.1 2900394 R 318167 CDS YP_751121.1 114563608 4279349 complement(2901345..2901953) 1 NC_008345.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 2901953 ribA 4279349 ribA Shewanella frigidimarina NCIMB 400 GTP cyclohydrolase II YP_751121.1 2901345 R 318167 CDS YP_751122.1 114563609 4279350 complement(2901991..2902347) 1 NC_008345.1 KEGG: son:SO2832 hypothetical protein; hypothetical protein 2902347 4279350 Sfri_2439 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751122.1 2901991 R 318167 CDS YP_751123.1 114563610 4279351 2902797..2905274 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1482 TonB-dependent receptor, putative; TonB-dependent receptor, plug 2905274 4279351 Sfri_2440 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor, plug YP_751123.1 2902797 D 318167 CDS YP_751124.1 114563611 4279352 2905481..2906719 1 NC_008345.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bur:Bcep18194_B2709 NADH-flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 2906719 4279352 Sfri_2441 Shewanella frigidimarina NCIMB 400 NADH:flavin oxidoreductase YP_751124.1 2905481 D 318167 CDS YP_751125.1 114563612 4279353 complement(2906824..2907291) 1 NC_008345.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 2907291 nrdG 4279353 nrdG Shewanella frigidimarina NCIMB 400 anaerobic ribonucleotide reductase-activating protein YP_751125.1 2906824 R 318167 CDS YP_751126.1 114563613 4279354 complement(2907291..2909408) 1 NC_008345.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2909408 4279354 Sfri_2443 Shewanella frigidimarina NCIMB 400 anaerobic ribonucleoside triphosphate reductase YP_751126.1 2907291 R 318167 CDS YP_751127.1 114563614 4279355 complement(2910061..2910999) 1 NC_008345.1 PFAM: Patatin; KEGG: son:SO2836 hypothetical protein; patatin 2910999 4279355 Sfri_2444 Shewanella frigidimarina NCIMB 400 patatin YP_751127.1 2910061 R 318167 CDS YP_751128.1 114563615 4279356 2911180..2912535 1 NC_008345.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2838 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 2912535 4279356 Sfri_2445 Shewanella frigidimarina NCIMB 400 DEAD/DEAH box helicase YP_751128.1 2911180 D 318167 CDS YP_751129.1 114563616 4279357 2912695..2913132 1 NC_008345.1 KEGG: son:SO2839 hypothetical protein; hypothetical protein 2913132 4279357 Sfri_2446 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751129.1 2912695 D 318167 CDS YP_751130.1 114563617 4279358 2913259..2913858 1 NC_008345.1 PFAM: protein of unknown function DUF45; KEGG: son:SO2840 hypothetical protein; hypothetical protein 2913858 4279358 Sfri_2447 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751130.1 2913259 D 318167 CDS YP_751131.1 114563618 4279359 complement(2913937..2914311) 1 NC_008345.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL1591 glyoxalase/dioxygenase superfamily protein; glyoxalase/bleomycin resistance protein/dioxygenase 2914311 4279359 Sfri_2448 Shewanella frigidimarina NCIMB 400 glyoxalase/bleomycin resistance protein/dioxygenase YP_751131.1 2913937 R 318167 CDS YP_751132.1 114563619 4279360 complement(2914344..2914517) 1 NC_008345.1 KEGG: bur:Bcep18194_B0771 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2914517 4279360 Sfri_2449 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_751132.1 2914344 R 318167 CDS YP_751133.1 114563620 4279361 complement(2914819..2916105) 1 NC_008345.1 PFAM: peptidase M23B; Opacity-associated protein A; KEGG: son:SO2842 peptidase, M23/M37 family; peptidase M23B 2916105 4279361 Sfri_2450 Shewanella frigidimarina NCIMB 400 peptidase M23B YP_751133.1 2914819 R 318167 CDS YP_751134.1 114563621 4279362 complement(2916418..2920116) 1 NC_008345.1 PFAM: SMC domain protein; KEGG: eca:ECA1108 exonuclease; SMC domain-containing protein 2920116 4279362 Sfri_2451 Shewanella frigidimarina NCIMB 400 SMC domain-containing protein YP_751134.1 2916418 R 318167 CDS YP_751135.1 114563622 4279363 complement(2920116..2921444) 1 NC_008345.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD 2921444 4279363 Sfri_2452 Shewanella frigidimarina NCIMB 400 exonuclease subunit SbcD YP_751135.1 2920116 R 318167 CDS YP_751136.1 114563623 4279364 complement(2921551..2922354) 1 NC_008345.1 PFAM: protein of unknown function DUF81; KEGG: son:SO2846 hypothetical protein; hypothetical protein 2922354 4279364 Sfri_2453 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751136.1 2921551 R 318167 CDS YP_751137.1 114563624 4279365 2922610..2923287 1 NC_008345.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ppr:PBPRA1938 putative short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2923287 4279365 Sfri_2454 Shewanella frigidimarina NCIMB 400 short-chain dehydrogenase/reductase SDR YP_751137.1 2922610 D 318167 CDS YP_751138.1 114563625 4279366 2923666..2923902 1 NC_008345.1 KEGG: son:SO1487 hypothetical protein; hypothetical protein 2923902 4279366 Sfri_2455 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751138.1 2923666 D 318167 CDS YP_751139.1 114563626 4279367 complement(2923996..2924382) 1 NC_008345.1 PFAM: protein of unknown function DUF1260; KEGG: son:SO1836 hypothetical protein; hypothetical protein 2924382 4279367 Sfri_2456 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751139.1 2923996 R 318167 CDS YP_751140.1 114563627 4279368 complement(2924393..2924626) 1 NC_008345.1 PFAM: RNA-binding S4 domain protein; KEGG: son:SO1835 hypothetical protein; RNA-binding S4 domain-containing protein 2924626 4279368 Sfri_2457 Shewanella frigidimarina NCIMB 400 RNA-binding S4 domain-containing protein YP_751140.1 2924393 R 318167 CDS YP_751141.1 114563628 4279369 complement(2924677..2925483) 1 NC_008345.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: son:SO2861 hypothetical protein; NAD-dependent epimerase/dehydratase 2925483 4279369 Sfri_2458 Shewanella frigidimarina NCIMB 400 NAD-dependent epimerase/dehydratase YP_751141.1 2924677 R 318167 CDS YP_751142.1 114563629 4279370 complement(2925511..2926713) 1 NC_008345.1 KEGG: son:SO2862 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 2926713 4279370 Sfri_2459 Shewanella frigidimarina NCIMB 400 metal dependent phosphohydrolase YP_751142.1 2925511 R 318167 CDS YP_751143.1 114563630 4279371 complement(2926868..2927389) 1 NC_008345.1 KEGG: son:SO2863 hypothetical protein; hypothetical protein 2927389 4279371 Sfri_2460 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751143.1 2926868 R 318167 CDS YP_751144.1 114563631 4279372 complement(2927444..2929456) 1 NC_008345.1 KEGG: son:SO2896 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase 2929456 4279372 Sfri_2461 Shewanella frigidimarina NCIMB 400 NAD-dependent DNA ligase YP_751144.1 2927444 R 318167 CDS YP_751145.1 114563632 4279373 complement(2929558..2930616) 1 NC_008345.1 TIGRFAM: cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; KEGG: son:SO2897 cell division protein ZipA; cell division protein ZipA 2930616 4279373 Sfri_2462 Shewanella frigidimarina NCIMB 400 cell division protein ZipA YP_751145.1 2929558 R 318167 CDS YP_751146.1 114563633 4279374 complement(2930638..2934072) 1 NC_008345.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: son:SO2898 SMC family protein; chromosome segregation protein SMC 2934072 4279374 Sfri_2463 Shewanella frigidimarina NCIMB 400 chromosome segregation protein SMC YP_751146.1 2930638 R 318167 CDS YP_751147.1 114563634 4279375 2934233..2935006 1 NC_008345.1 putative role in sulfur assimilation; putative sulfate transport protein CysZ 2935006 4279375 Sfri_2464 Shewanella frigidimarina NCIMB 400 putative sulfate transport protein CysZ YP_751147.1 2934233 D 318167 CDS YP_751148.1 114563635 4279376 2935264..2937675 1 NC_008345.1 KEGG: son:SO2900 hypothetical protein; hypothetical protein 2937675 4279376 Sfri_2465 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751148.1 2935264 D 318167 CDS YP_751149.1 114563636 4279377 complement(2937789..2939009) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: hch:HCH_06018 response regulator containing a CheY-like receiver domain and a GGDEF domain; diguanylate cyclase 2939009 4279377 Sfri_2466 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_751149.1 2937789 R 318167 CDS YP_751150.1 114563637 4279378 complement(2939052..2940173) 1 NC_008345.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 2940173 4279378 Sfri_2467 Shewanella frigidimarina NCIMB 400 3-oxoacyl-ACP synthase YP_751150.1 2939052 R 318167 CDS YP_751151.1 114563638 4279379 2940560..2941525 1 NC_008345.1 TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: son:SO2903 cysteine synthase A; cysteine synthase A 2941525 4279379 Sfri_2468 Shewanella frigidimarina NCIMB 400 cysteine synthase A YP_751151.1 2940560 D 318167 CDS YP_751152.1 114563639 4279380 2941840..2942733 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vvy:VVA0738 transcriptional regulator; transcriptional regulator, LysR family protein 2942733 4279380 Sfri_2469 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_751152.1 2941840 D 318167 CDS YP_751153.1 114563640 4279381 complement(2942800..2944476) 1 NC_008345.1 PFAM: formate/nitrite transporter; CBS domain containing protein; KEGG: son:SO2911 formate transporter, putative; formate/nitrite transporter 2944476 4279381 Sfri_2470 Shewanella frigidimarina NCIMB 400 formate/nitrite transporter YP_751153.1 2942800 R 318167 CDS YP_751154.1 114563641 4279382 2945933..2948806 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcv:XCV2894 TonB-dependent outer membrane receptor; TonB-dependent receptor 2948806 4279382 Sfri_2471 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor YP_751154.1 2945933 D 318167 CDS YP_751155.1 114563642 4279383 2949493..2951025 1 NC_008345.1 KEGG: ppr:PBPRA2749 hypothetical integral membrane protein; hypothetical protein 2951025 4279383 Sfri_2472 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751155.1 2949493 D 318167 CDS YP_751156.1 114563643 4279384 2951431..2953713 1 NC_008345.1 KEGG: son:SO2912 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; formate acetyltransferase 2953713 4279384 Sfri_2473 Shewanella frigidimarina NCIMB 400 formate acetyltransferase YP_751156.1 2951431 D 318167 CDS YP_751157.1 114563644 4279385 2953792..2954529 1 NC_008345.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 2954529 pflA 4279385 pflA Shewanella frigidimarina NCIMB 400 pyruvate formate lyase-activating enzyme 1 YP_751157.1 2953792 D 318167 CDS YP_751158.1 114563645 4279386 complement(2954583..2955020) 1 NC_008345.1 PFAM: protein of unknown function DUF412; KEGG: son:SO2914 hypothetical protein; hypothetical protein 2955020 4279386 Sfri_2475 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751158.1 2954583 R 318167 CDS YP_751159.1 114563646 4279387 2955250..2956452 1 NC_008345.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2956452 4279387 Sfri_2476 Shewanella frigidimarina NCIMB 400 acetate kinase YP_751159.1 2955250 D 318167 CDS YP_751160.1 114563647 4279388 2956515..2958662 1 NC_008345.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2958662 4279388 Sfri_2477 Shewanella frigidimarina NCIMB 400 phosphate acetyltransferase YP_751160.1 2956515 D 318167 CDS YP_751161.1 114563648 4279389 complement(2958949..2961636) 1 NC_008345.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2961636 4279389 Sfri_2478 Shewanella frigidimarina NCIMB 400 DNA topoisomerase I YP_751161.1 2958949 R 318167 CDS YP_751162.1 114563649 4279390 2961980..2963314 1 NC_008345.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 2963314 4279390 Sfri_2479 Shewanella frigidimarina NCIMB 400 succinylarginine dihydrolase YP_751162.1 2961980 D 318167 CDS YP_751163.1 114563650 4279391 complement(2963473..2965935) 1 NC_008345.1 PFAM: Ig domain protein, group 1 domain protein; KEGG: cps:CPS_1195 intimin/invasin family protein; Ig domain-containing protein 2965935 4279391 Sfri_2480 Shewanella frigidimarina NCIMB 400 Ig domain-containing protein YP_751163.1 2963473 R 318167 CDS YP_751164.1 114563651 4279392 2966159..2967469 1 NC_008345.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO1948 sodium:dicarboxylate symporter family protein; sodium:dicarboxylate symporter 2967469 4279392 Sfri_2481 Shewanella frigidimarina NCIMB 400 sodium:dicarboxylate symporter YP_751164.1 2966159 D 318167 CDS YP_751165.1 114563652 4279393 2967657..2968331 1 NC_008345.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO0765 threonine efflux protein, putative; lysine exporter protein LysE/YggA 2968331 4279393 Sfri_2482 Shewanella frigidimarina NCIMB 400 lysine exporter protein LysE/YggA YP_751165.1 2967657 D 318167 CDS YP_751166.1 114563653 4279394 complement(2968444..2969961) 1 NC_008345.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cps:CPS_3311 putative phosphonate ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2969961 4279394 Sfri_2483 Shewanella frigidimarina NCIMB 400 binding-protein-dependent transport system inner membrane protein YP_751166.1 2968444 R 318167 CDS YP_751167.1 114563654 4279395 complement(2970019..2970696) 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_3310 putative phosphonate ABC transporter, ATP-binding protein; ABC transporter 2970696 4279395 Sfri_2484 Shewanella frigidimarina NCIMB 400 ABC transporter YP_751167.1 2970019 R 318167 CDS YP_751168.1 114563655 4279396 complement(2970696..2971550) 1 NC_008345.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: cps:CPS_3309 putative phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter, periplasmic phosphonate-binding protein 2971550 4279396 Sfri_2485 Shewanella frigidimarina NCIMB 400 phosphonate ABC transporter, periplasmic phosphonate-binding protein YP_751168.1 2970696 R 318167 CDS YP_751169.1 114563656 4279397 2971790..2972464 1 NC_008345.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1946 transcriptional regulatory protein PhoP; two component transcriptional regulator, winged helix family protein 2972464 4279397 Sfri_2486 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, winged helix family protein YP_751169.1 2971790 D 318167 CDS YP_751170.1 114563657 4279398 2972455..2973807 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1945 sensor protein PhoQ; periplasmic sensor signal transduction histidine kinase 2973807 4279398 Sfri_2487 Shewanella frigidimarina NCIMB 400 periplasmic sensor signal transduction histidine kinase YP_751170.1 2972455 D 318167 CDS YP_751171.1 114563658 4279399 complement(2973878..2974573) 1 NC_008345.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO1944 hypothetical protein; 2OG-Fe(II) oxygenase 2974573 4279399 Sfri_2488 Shewanella frigidimarina NCIMB 400 2OG-Fe(II) oxygenase YP_751171.1 2973878 R 318167 CDS YP_751172.1 114563659 4279400 2974689..2975939 1 NC_008345.1 KEGG: son:SO1942 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 2975939 4279400 Sfri_2489 Shewanella frigidimarina NCIMB 400 metal dependent phosphohydrolase YP_751172.1 2974689 D 318167 CDS YP_751173.1 114563660 4279401 complement(2976116..2977063) 1 NC_008345.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein, CorA family protein; KEGG: son:SO1941 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 2977063 4279401 Sfri_2490 Shewanella frigidimarina NCIMB 400 magnesium and cobalt transport protein CorA YP_751173.1 2976116 R 318167 CDS YP_751174.1 114563661 4279402 complement(2977515..2978543) 1 NC_008345.1 PFAM: 37kDa nucleoid-associated protein; KEGG: son:SO2177 hypothetical protein; nucleoid-associated protein NdpA 2978543 4279402 Sfri_2491 Shewanella frigidimarina NCIMB 400 nucleoid-associated protein NdpA YP_751174.1 2977515 R 318167 CDS YP_751175.1 114563662 4279403 2978727..2978939 1 NC_008345.1 PFAM: protein of unknown function DUF1414; KEGG: son:SO2176 hypothetical protein; hypothetical protein 2978939 4279403 Sfri_2492 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751175.1 2978727 D 318167 CDS YP_751176.1 114563663 4279404 2979025..2980815 1 NC_008345.1 PFAM: sulfatase; KEGG: son:SO2175 hypothetical protein; sulfatase 2980815 4279404 Sfri_2493 Shewanella frigidimarina NCIMB 400 sulfatase YP_751176.1 2979025 D 318167 CDS YP_751177.1 114563664 4279405 complement(2981546..2981986) 1 NC_008345.1 KEGG: aci:ACIAD0819 hypothetical protein; putative signal peptide; hypothetical protein 2981986 4279405 Sfri_2494 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751177.1 2981546 R 318167 CDS YP_751178.1 114563665 4279406 complement(2982841..2983548) 1 NC_008345.1 KEGG: cte:CT1157 hypothetical protein; hypothetical protein 2983548 4279406 Sfri_2495 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751178.1 2982841 R 318167 CDS YP_751179.1 114563666 4279407 complement(2984943..2985872) 1 NC_008345.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: ssp:SSP0073 putative restriction endonuclease; HNH endonuclease 2985872 4279407 Sfri_2497 Shewanella frigidimarina NCIMB 400 HNH endonuclease YP_751179.1 2984943 R 318167 CDS YP_751180.1 114563667 4279408 complement(2986532..2987971) 1 NC_008345.1 PFAM: Ankyrin; KEGG: ani:AN8019.2 hypothetical protein; ankyrin 2987971 4279408 Sfri_2498 Shewanella frigidimarina NCIMB 400 ankyrin YP_751180.1 2986532 R 318167 CDS YP_751181.1 114563668 4279409 complement(2988088..2990166) 1 NC_008345.1 KEGG: gsu:GSU3414 hypothetical protein; hypothetical protein 2990166 4279409 Sfri_2499 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751181.1 2988088 R 318167 CDS YP_751182.1 114563669 4279410 2991322..2991978 1 NC_008345.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: cps:CPS_1156 glutathione-S-transferase domain protein; glutathione S-transferase domain-containing protein 2991978 4279410 Sfri_2500 Shewanella frigidimarina NCIMB 400 glutathione S-transferase domain-containing protein YP_751182.1 2991322 D 318167 CDS YP_751183.1 114563670 4279411 complement(2992131..2992889) 1 NC_008345.1 KEGG: ppr:PBPRA1945 hypothetical protein; hypothetical protein 2992889 4279411 Sfri_2501 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751183.1 2992131 R 318167 CDS YP_751184.1 114563671 4279412 complement(2993350..2994207) 1 NC_008345.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: sil:SPO0261 hypothetical protein; hypothetical protein 2994207 4279412 Sfri_2502 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751184.1 2993350 R 318167 CDS YP_751185.1 114563672 4279413 complement(2994580..2996286) 1 NC_008345.1 activates fatty acids by binding to coenzyme A; AMP-binding protein 2996286 4279413 Sfri_2503 Shewanella frigidimarina NCIMB 400 AMP-binding protein YP_751185.1 2994580 R 318167 CDS YP_751186.1 114563673 4279414 2996780..3000178 1 NC_008345.1 KEGG: pha:PSHAa1151 two-component member protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MHYT domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 3000178 4279414 Sfri_2504 Shewanella frigidimarina NCIMB 400 multi-sensor hybrid histidine kinase YP_751186.1 2996780 D 318167 CDS YP_751187.1 114563674 4279415 3000193..3001188 1 NC_008345.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: pha:PSHAa1150 response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase); response regulator receiver modulated metal dependent phosphohydrolase 3001188 4279415 Sfri_2505 Shewanella frigidimarina NCIMB 400 response regulator receiver modulated metal dependent phosphohydrolase YP_751187.1 3000193 D 318167 CDS YP_751188.1 114563675 4279416 3001314..3002519 1 NC_008345.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pha:PSHAa2207 carbohydrates permease; major facilitator transporter 3002519 4279416 Sfri_2506 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_751188.1 3001314 D 318167 CDS YP_751189.1 114563676 4279417 complement(3002769..3003962) 1 NC_008345.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cps:CPS_3978 oxidoreductase, FAD/FMN-binding; NADH:flavin oxidoreductase 3003962 4279417 Sfri_2507 Shewanella frigidimarina NCIMB 400 NADH:flavin oxidoreductase YP_751189.1 3002769 R 318167 CDS YP_751190.1 114563677 4279418 3004749..3005627 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0295 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 3005627 4279418 Sfri_2509 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_751190.1 3004749 D 318167 CDS YP_751191.1 114563678 4279419 complement(3005760..3006128) 1 NC_008345.1 KEGG: son:SO3623 tetraheme cytochrome c; tetraheme cytochrome c 3006128 4279419 Sfri_2510 Shewanella frigidimarina NCIMB 400 tetraheme cytochrome c YP_751191.1 3005760 R 318167 CDS YP_751192.1 114563679 4279420 complement(3006139..3007662) 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO3058 flavocytochrome c flavin subunit, putative; flavocytochrome c 3007662 4279420 Sfri_2511 Shewanella frigidimarina NCIMB 400 flavocytochrome c YP_751192.1 3006139 R 318167 CDS YP_751193.1 114563680 4279421 3008292..3009191 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_3977 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 3009191 4279421 Sfri_2512 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_751193.1 3008292 D 318167 CDS YP_751194.1 114563681 4279422 complement(3009313..3010800) 1 NC_008345.1 PFAM: glutathione synthase; glutathione synthase, ATP-binding; KEGG: vfi:VF0976 glutathione synthetase; glutathione synthase 3010800 4279422 Sfri_2513 Shewanella frigidimarina NCIMB 400 glutathione synthase YP_751194.1 3009313 R 318167 CDS YP_751195.1 114563682 4279423 complement(3010993..3011532) 1 NC_008345.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigZ 3011532 4279423 Sfri_2514 Shewanella frigidimarina NCIMB 400 RNA polymerase sigma factor SigZ YP_751195.1 3010993 R 318167 CDS YP_751196.1 114563683 4279424 complement(3011634..3011927) 1 NC_008345.1 SMART: regulatory protein, ArsR; KEGG: vpa:VPA0462 hypothetical protein; putative transcriptional regulator, ArsR family protein 3011927 4279424 Sfri_2515 Shewanella frigidimarina NCIMB 400 putative transcriptional regulator, ArsR family protein YP_751196.1 3011634 R 318167 CDS YP_751197.1 114563684 4279425 3012019..3012969 1 NC_008345.1 PFAM: permease; KEGG: vfi:VFA0175 hypothetical membrane spanning protein; permease 3012969 4279425 Sfri_2516 Shewanella frigidimarina NCIMB 400 permease YP_751197.1 3012019 D 318167 CDS YP_751198.1 114563685 4279426 3013249..3014412 1 NC_008345.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: son:SO2045 cation efflux family protein; cation diffusion facilitator family transporter 3014412 4279426 Sfri_2517 Shewanella frigidimarina NCIMB 400 cation diffusion facilitator family transporter YP_751198.1 3013249 D 318167 CDS YP_751199.1 114563686 4279427 3014421..3014828 1 NC_008345.1 PFAM: regulatory protein, MarR; KEGG: vpa:VPA1286 putative transcriptional regulator; transcriptional regulator, MarR family protein 3014828 4279427 Sfri_2518 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MarR family protein YP_751199.1 3014421 D 318167 CDS YP_751200.1 114563687 4279428 complement(3015000..3015335) 1 NC_008345.1 hypothetical protein 3015335 4279428 Sfri_2519 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751200.1 3015000 R 318167 CDS YP_751201.1 114563688 4279429 complement(3015363..3015884) 1 NC_008345.1 KEGG: cps:CPS_4861 hypothetical protein; hypothetical protein 3015884 4279429 Sfri_2520 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751201.1 3015363 R 318167 CDS YP_751202.1 114563689 4279430 complement(3015898..3016596) 1 NC_008345.1 KEGG: cps:CPS_4862 hypothetical protein; hypothetical protein 3016596 4279430 Sfri_2521 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751202.1 3015898 R 318167 CDS YP_751203.1 114563690 4279431 complement(3016753..3017733) 1 NC_008345.1 PFAM: peptidase M56, BlaR1; KEGG: noc:Noc_0291 hypothetical protein; peptidase M56, BlaR1 3017733 4279431 Sfri_2522 Shewanella frigidimarina NCIMB 400 peptidase M56, BlaR1 YP_751203.1 3016753 R 318167 CDS YP_751204.1 114563691 4279432 complement(3017735..3018118) 1 NC_008345.1 PFAM: Penicillinase repressor; KEGG: noc:Noc_0290 penicillinase repressor; transcriptional repressor, CopY family protein 3018118 4279432 Sfri_2523 Shewanella frigidimarina NCIMB 400 transcriptional repressor, CopY family protein YP_751204.1 3017735 R 318167 CDS YP_751205.1 114563692 4279433 3018529..3018702 1 NC_008345.1 KEGG: pha:PSHAa1267 hypothetical protein; hypothetical protein 3018702 4279433 Sfri_2524 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751205.1 3018529 D 318167 CDS YP_751206.1 114563693 4279434 3018943..3019272 1 NC_008345.1 KEGG: son:SO1947 hypothetical protein; hypothetical protein 3019272 4279434 Sfri_2525 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751206.1 3018943 D 318167 CDS YP_751207.1 114563694 4279435 complement(3019285..3019890) 1 NC_008345.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 3019890 4279435 Sfri_2526 Shewanella frigidimarina NCIMB 400 putative sulfite oxidase subunit YedZ YP_751207.1 3019285 R 318167 CDS YP_751208.1 114563695 4279436 complement(3019890..3020927) 1 NC_008345.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 3020927 4279436 Sfri_2527 Shewanella frigidimarina NCIMB 400 putative sulfite oxidase subunit YedY YP_751208.1 3019890 R 318167 CDS YP_751209.1 114563696 4279437 3021235..3022731 1 NC_008345.1 PFAM: protein of unknown function DUF195; KEGG: son:SO2041 hypothetical protein; hypothetical protein 3022731 4279437 Sfri_2528 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751209.1 3021235 D 318167 CDS YP_751210.1 114563697 4279438 3022888..3024816 1 NC_008345.1 PFAM: Lytic transglycosylase, catalytic; KEGG: son:SO2040 soluble lytic murein transglycosylase, putative; lytic transglycosylase, catalytic 3024816 4279438 Sfri_2529 Shewanella frigidimarina NCIMB 400 lytic transglycosylase, catalytic YP_751210.1 3022888 D 318167 CDS YP_751211.1 114563698 4279439 3025235..3026146 1 NC_008345.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: son:SO2153 MoxR protein; ATPase 3026146 4279439 Sfri_2530 Shewanella frigidimarina NCIMB 400 ATPase YP_751211.1 3025235 D 318167 CDS YP_751212.1 114563699 4279440 3026159..3027277 1 NC_008345.1 PFAM: protein of unknown function DUF58; KEGG: son:SO2151 hypothetical protein; hypothetical protein 3027277 4279440 Sfri_2531 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751212.1 3026159 D 318167 CDS YP_751213.1 114563700 4279441 3027274..3029349 1 NC_008345.1 PFAM: transglutaminase domain protein; KEGG: son:SO2150 transglutaminase family protein; transglutaminase domain-containing protein 3029349 4279441 Sfri_2532 Shewanella frigidimarina NCIMB 400 transglutaminase domain-containing protein YP_751213.1 3027274 D 318167 CDS YP_751214.1 114563701 4279442 3029453..3033265 1 NC_008345.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: son:SO2149 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 3033265 4279442 Sfri_2533 Shewanella frigidimarina NCIMB 400 exodeoxyribonuclease V subunit gamma YP_751214.1 3029453 D 318167 CDS YP_751215.1 114563702 4279443 3033265..3037095 1 NC_008345.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: son:SO2148 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 3037095 4279443 Sfri_2534 Shewanella frigidimarina NCIMB 400 exodeoxyribonuclease V subunit beta YP_751215.1 3033265 D 318167 CDS YP_751216.1 114563703 4279444 3037089..3039152 1 NC_008345.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: son:SO2147 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 3039152 4279444 Sfri_2535 Shewanella frigidimarina NCIMB 400 exodeoxyribonuclease V subunit alpha YP_751216.1 3037089 D 318167 CDS YP_751217.1 114563704 4279445 complement(3039991..3040749) 1 NC_008345.1 KEGG: bur:Bcep18194_C6910 hypothetical protein; hypothetical protein 3040749 4279445 Sfri_2536 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751217.1 3039991 R 318167 CDS YP_751218.1 114563705 4279446 complement(3041450..3042700) 1 NC_008345.1 hypothetical protein 3042700 4279446 Sfri_2538 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751218.1 3041450 R 318167 CDS YP_751219.1 114563706 4279447 complement(3043041..3043304) 1 NC_008345.1 hypothetical protein 3043304 4279447 Sfri_2539 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751219.1 3043041 R 318167 CDS YP_751220.1 114563707 4279448 complement(3043502..3043891) 1 NC_008345.1 hypothetical protein 3043891 4279448 Sfri_2540 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751220.1 3043502 R 318167 CDS YP_751221.1 114563708 4279449 complement(3044167..3044388) 1 NC_008345.1 KEGG: pha:PSHAb0268 putative orphan protein; putative orphan protein 3044388 4279449 Sfri_2541 Shewanella frigidimarina NCIMB 400 putative orphan protein YP_751221.1 3044167 R 318167 CDS YP_751222.1 114563709 4279450 3044848..3046446 1 NC_008345.1 PFAM: Alkaline phosphatase; KEGG: cps:CPS_3932 alkaline phosphatase family protein; alkaline phosphatase 3046446 4279450 Sfri_2542 Shewanella frigidimarina NCIMB 400 alkaline phosphatase YP_751222.1 3044848 D 318167 CDS YP_751223.1 114563710 4279451 3046463..3048385 1 NC_008345.1 PFAM: Alkaline phosphatase; KEGG: cps:CPS_3933 alkaline phosphatase family protein; alkaline phosphatase 3048385 4279451 Sfri_2543 Shewanella frigidimarina NCIMB 400 alkaline phosphatase YP_751223.1 3046463 D 318167 CDS YP_751224.1 114563711 4279452 3048477..3049217 1 NC_008345.1 KEGG: pha:PSHAa2975 hypothetical protein ; secreted protein; hypothetical protein 3049217 4279452 Sfri_2544 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751224.1 3048477 D 318167 CDS YP_751225.1 114563712 4279453 3049763..3050212 1 NC_008345.1 KEGG: vvu:VV12469 excinuclease ATPase subunit; excinuclease ATPase subunit 3050212 4279453 Sfri_2545 Shewanella frigidimarina NCIMB 400 excinuclease ATPase subunit YP_751225.1 3049763 D 318167 CDS YP_751226.1 114563713 4279454 3050341..3050688 1 NC_008345.1 PFAM: protein of unknown function UPF0153; KEGG: ppr:PBPRA2316 hypothetical protein; hypothetical protein 3050688 4279454 Sfri_2546 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751226.1 3050341 D 318167 CDS YP_751227.1 114563714 4279455 complement(3050791..3051258) 1 NC_008345.1 KEGG: ilo:IL2513 hypothetical protein; hypothetical protein 3051258 4279455 Sfri_2547 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751227.1 3050791 R 318167 CDS YP_751228.1 114563715 4279456 complement(3051258..3052430) 1 NC_008345.1 PFAM: Propeptide, PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: ilo:IL2512 uncharacterized iron-regulated membrane protein; PepSY-associated TM helix domain-containing protein 3052430 4279456 Sfri_2548 Shewanella frigidimarina NCIMB 400 PepSY-associated TM helix domain-containing protein YP_751228.1 3051258 R 318167 CDS YP_751229.1 114563716 4279457 3052685..3054787 1 NC_008345.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_2724 FhuE receptor; TonB-dependent siderophore receptor 3054787 4279457 Sfri_2549 Shewanella frigidimarina NCIMB 400 TonB-dependent siderophore receptor YP_751229.1 3052685 D 318167 CDS YP_751230.1 114563717 4279458 3055342..3056352 1 NC_008345.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 3056352 ddl 4279458 ddl Shewanella frigidimarina NCIMB 400 D-alanyl-alanine synthetase A YP_751230.1 3055342 D 318167 CDS YP_751231.1 114563718 4279459 complement(3056433..3057032) 1 NC_008345.1 TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: cps:CPS_1055 cytochrome c-type protein NapC; periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family protein 3057032 4279459 Sfri_2551 Shewanella frigidimarina NCIMB 400 periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family protein YP_751231.1 3056433 R 318167 CDS YP_751232.1 114563719 4279460 complement(3057041..3057511) 1 NC_008345.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: ppr:PBPRA2029 hypothetical periplasmic nitrate reductase small subunit precursor; nitrate reductase cytochrome c-type subunit (NapB) 3057511 4279460 Sfri_2552 Shewanella frigidimarina NCIMB 400 nitrate reductase cytochrome c-type subunit (NapB) YP_751232.1 3057041 R 318167 CDS YP_751233.1 114563720 4279461 complement(3057523..3060012) 1 NC_008345.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 3060012 4279461 Sfri_2553 Shewanella frigidimarina NCIMB 400 nitrate reductase catalytic subunit YP_751233.1 3057523 R 318167 CDS YP_751234.1 114563721 4279462 complement(3060015..3060272) 1 NC_008345.1 PFAM: NapD family protein; KEGG: son:SO0849 napD protein; NapD family protein 3060272 4279462 Sfri_2554 Shewanella frigidimarina NCIMB 400 NapD family protein YP_751234.1 3060015 R 318167 CDS YP_751235.1 114563722 4279463 complement(3060306..3060464) 1 NC_008345.1 PFAM: periplasmic nitrate reductase NapE; KEGG: cps:CPS_1060 NapE protein; periplasmic nitrate reductase NapE 3060464 4279463 Sfri_2555 Shewanella frigidimarina NCIMB 400 periplasmic nitrate reductase NapE YP_751235.1 3060306 R 318167 CDS YP_751236.1 114563723 4279464 complement(3060857..3061765) 1 NC_008345.1 KEGG: son:SO2919 hypothetical protein; hypothetical protein 3061765 4279464 Sfri_2556 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751236.1 3060857 R 318167 CDS YP_751237.1 114563724 4279465 complement(3061806..3063020) 1 NC_008345.1 PFAM: protein of unknown function UPF0118; KEGG: son:SO2920 hypothetical protein; hypothetical protein 3063020 4279465 Sfri_2557 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751237.1 3061806 R 318167 CDS YP_751238.1 114563725 4279466 3063179..3063547 1 NC_008345.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 3063547 folX 4279466 folX Shewanella frigidimarina NCIMB 400 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase YP_751238.1 3063179 D 318167 CDS YP_751239.1 114563726 4279467 3063629..3064528 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal; domain of unknown function DUF1731; KEGG: son:SO2922 hypothetical protein; hypothetical protein 3064528 4279467 Sfri_2559 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751239.1 3063629 D 318167 CDS YP_751240.1 114563727 4279468 complement(3064587..3065486) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0997 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 3065486 4279468 Sfri_2560 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_751240.1 3064587 R 318167 CDS YP_751241.1 114563728 4279469 3065802..3066305 1 NC_008345.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO0996 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 3066305 4279469 Sfri_2561 Shewanella frigidimarina NCIMB 400 glyoxalase/bleomycin resistance protein/dioxygenase YP_751241.1 3065802 D 318167 CDS YP_751242.1 114563729 4279470 complement(3066395..3067084) 1 NC_008345.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ppr:PBPRB1023 hypothetical ribosomal small subunit pseudouridine synthase A; pseudouridine synthase, Rsu 3067084 4279470 Sfri_2562 Shewanella frigidimarina NCIMB 400 pseudouridine synthase, Rsu YP_751242.1 3066395 R 318167 CDS YP_751243.1 114563730 4279471 complement(3067233..3068096) 1 NC_008345.1 KEGG: par:Psyc_1092 hypothetical protein; hypothetical protein 3068096 4279471 Sfri_2563 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751243.1 3067233 R 318167 CDS YP_751244.1 114563731 4279472 3068536..3068790 1 NC_008345.1 KEGG: vch:VCA0343 hypothetical protein; hypothetical protein 3068790 4279472 Sfri_2565 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751244.1 3068536 D 318167 CDS YP_751245.1 114563732 4279473 complement(3068857..3071340) 1 NC_008345.1 PFAM: protein of unknown function DUF214; KEGG: son:SO2926 ABC transporter, permease, putative; hypothetical protein 3071340 4279473 Sfri_2566 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751245.1 3068857 R 318167 CDS YP_751246.1 114563733 4279474 complement(3071340..3072089) 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2927 ABC transporter, ATP-binding protein; ABC transporter 3072089 4279474 Sfri_2567 Shewanella frigidimarina NCIMB 400 ABC transporter YP_751246.1 3071340 R 318167 CDS YP_751247.1 114563734 4279475 3072121..3072708 1 NC_008345.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: son:SO2928 acyl-CoA thioesterase I, putative; arylesterase 3072708 4279475 Sfri_2568 Shewanella frigidimarina NCIMB 400 arylesterase YP_751247.1 3072121 D 318167 CDS YP_751248.1 114563735 4279476 3072884..3073951 1 NC_008345.1 KEGG: son:SO2929 hypothetical protein; hypothetical protein 3073951 4279476 Sfri_2569 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751248.1 3072884 D 318167 CDS YP_751249.2 228962557 4279477 complement(3074039..3075049) 1 NC_008345.1 SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 3075049 4279477 Sfri_2570 Shewanella frigidimarina NCIMB 400 putative periplasmic protease YP_751249.2 3074039 R 318167 CDS YP_751250.1 114563737 4279478 complement(3075172..3077661) 1 NC_008345.1 KEGG: son:SO2934 hypothetical protein; hypothetical protein 3077661 4279478 Sfri_2571 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751250.1 3075172 R 318167 CDS YP_751251.1 114563738 4279479 3077921..3078658 1 NC_008345.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO2935 short chain dehydrogenase; short chain dehydrogenase 3078658 4279479 Sfri_2572 Shewanella frigidimarina NCIMB 400 short chain dehydrogenase YP_751251.1 3077921 D 318167 CDS YP_751252.1 114563739 4279480 complement(3078748..3079086) 1 NC_008345.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: son:SO1813 DNA-binding protein, putative; helix-hairpin-helix repeat-containing competence protein ComEA 3079086 4279480 Sfri_2573 Shewanella frigidimarina NCIMB 400 helix-hairpin-helix repeat-containing competence protein ComEA YP_751252.1 3078748 R 318167 CDS YP_751253.1 114563740 4279481 complement(3079227..3080318) 1 NC_008345.1 PFAM: conserved hypothetical protein 1620; KEGG: son:SO1811 hypothetical protein; hypothetical protein 3080318 4279481 Sfri_2574 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751253.1 3079227 R 318167 CDS YP_751254.1 114563741 4279482 complement(3080354..3081796) 1 NC_008345.1 PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: son:SO1810 hypothetical ATPase; hypothetical protein 3081796 4279482 Sfri_2575 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751254.1 3080354 R 318167 CDS YP_751255.1 114563742 4279483 complement(3081850..3082245) 1 NC_008345.1 PFAM: PspC domain protein; KEGG: son:SO1809 phage shock protein C; phage shock protein C, PspC 3082245 4279483 Sfri_2576 Shewanella frigidimarina NCIMB 400 phage shock protein C, PspC YP_751255.1 3081850 R 318167 CDS YP_751256.1 114563743 4279484 complement(3082232..3082465) 1 NC_008345.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 3082465 pspB 4279484 pspB Shewanella frigidimarina NCIMB 400 phage shock protein B YP_751256.1 3082232 R 318167 CDS YP_751257.1 114563744 4279485 complement(3082491..3083174) 1 NC_008345.1 PFAM: PspA/IM30 family protein; KEGG: son:SO1807 phage shock protein A; phage shock protein A, PspA 3083174 4279485 Sfri_2578 Shewanella frigidimarina NCIMB 400 phage shock protein A, PspA YP_751257.1 3082491 R 318167 CDS YP_751258.1 114563745 4279486 3083367..3084446 1 NC_008345.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO1806 psp operon transcriptional activator; sigma54 specific transcriptional regulator, Fis family protein 3084446 4279486 Sfri_2579 Shewanella frigidimarina NCIMB 400 sigma54 specific transcriptional regulator, Fis family protein YP_751258.1 3083367 D 318167 CDS YP_751259.1 114563746 4279487 3084530..3086155 1 NC_008345.1 PFAM: extracellular solute-binding protein, family 5; KEGG: son:SO1805 peptide ABC transporter, periplasmic peptide-binding protein; extracellular solute-binding protein 3086155 4279487 Sfri_2580 Shewanella frigidimarina NCIMB 400 extracellular solute-binding protein YP_751259.1 3084530 D 318167 CDS YP_751260.1 114563747 4279488 3086156..3087187 1 NC_008345.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1804 peptide ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 3087187 4279488 Sfri_2581 Shewanella frigidimarina NCIMB 400 binding-protein-dependent transport systems inner membrane component YP_751260.1 3086156 D 318167 CDS YP_751261.1 114563748 4279489 3087174..3088064 1 NC_008345.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1803 peptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3088064 4279489 Sfri_2582 Shewanella frigidimarina NCIMB 400 binding-protein-dependent transport system inner membrane protein YP_751261.1 3087174 D 318167 CDS YP_751262.1 114563749 4279490 3088068..3089075 1 NC_008345.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; KEGG: son:SO1802 peptide ABC transporter, ATP-binding protein; oligopeptide/dipeptide ABC transporter ATPase 3089075 4279490 Sfri_2583 Shewanella frigidimarina NCIMB 400 oligopeptide/dipeptide ABC transporter ATPase YP_751262.1 3088068 D 318167 CDS YP_751263.1 114563750 4279491 3089056..3089841 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein; ABC transporter 3089841 4279491 Sfri_2584 Shewanella frigidimarina NCIMB 400 ABC transporter YP_751263.1 3089056 D 318167 CDS YP_751264.1 114563751 4279492 3089947..3091149 1 NC_008345.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 3091149 4279492 Sfri_2585 Shewanella frigidimarina NCIMB 400 trans-2-enoyl-CoA reductase YP_751264.1 3089947 D 318167 CDS YP_751265.1 114563752 4279493 complement(3091321..3093087) 1 NC_008345.1 TIGRFAM: flavocytochrome c; PFAM: glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0970 fumarate reductase flavoprotein subunit precursor; flavocytochrome c 3093087 4279493 Sfri_2586 Shewanella frigidimarina NCIMB 400 flavocytochrome c YP_751265.1 3091321 R 318167 CDS YP_751266.1 114563753 4279494 3093358..3094413 1 NC_008345.1 PFAM: porin, Gram-negative type; KEGG: son:SO3896 outer membrane porin, putative; porin 3094413 4279494 Sfri_2587 Shewanella frigidimarina NCIMB 400 porin YP_751266.1 3093358 D 318167 CDS YP_751267.1 114563754 4279495 3094626..3095507 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2561 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 3095507 4279495 Sfri_2588 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_751267.1 3094626 D 318167 CDS YP_751268.1 114563755 4279496 3095604..3096836 1 NC_008345.1 PFAM: protein of unknown function DUF819; KEGG: son:SO3828 hypothetical protein; hypothetical protein 3096836 4279496 Sfri_2589 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751268.1 3095604 D 318167 CDS YP_751269.1 114563756 4279497 complement(3096964..3097869) 1 NC_008345.1 PFAM: transcription activator, effector binding; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: bja:blr4000 transcriptional regulatory protein; transcription activator, effector binding 3097869 4279497 Sfri_2590 Shewanella frigidimarina NCIMB 400 transcription activator, effector binding YP_751269.1 3096964 R 318167 CDS YP_751270.1 114563757 4279498 complement(3097993..3098607) 1 NC_008345.1 PFAM: pentapeptide repeat protein; KEGG: son:SO4064 mcbg protein, putative; pentapeptide repeat-containing protein 3098607 4279498 Sfri_2591 Shewanella frigidimarina NCIMB 400 pentapeptide repeat-containing protein YP_751270.1 3097993 R 318167 CDS YP_751271.1 114563758 4279499 complement(3098688..3100565) 1 NC_008345.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1798 peptidyl-prolyl cis-trans isomerase D; PpiC-type peptidyl-prolyl cis-trans isomerase 3100565 4279499 Sfri_2592 Shewanella frigidimarina NCIMB 400 PpiC-type peptidyl-prolyl cis-trans isomerase YP_751271.1 3098688 R 318167 CDS YP_751272.1 114563759 4279500 complement(3100782..3101057) 1 NC_008345.1 PFAM: histone family protein DNA-binding protein; KEGG: son:SO1797 DNA-binding protein, HU family; histone family protein DNA-binding protein 3101057 4279500 Sfri_2593 Shewanella frigidimarina NCIMB 400 histone family protein DNA-binding protein YP_751272.1 3100782 R 318167 CDS YP_751273.1 114563760 4279501 complement(3101319..3103670) 1 NC_008345.1 KEGG: son:SO1796 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 3103670 4279501 Sfri_2594 Shewanella frigidimarina NCIMB 400 ATP-dependent protease La YP_751273.1 3101319 R 318167 CDS YP_751274.1 114563761 4279502 complement(3103802..3105082) 1 NC_008345.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 3105082 clpX 4279502 clpX Shewanella frigidimarina NCIMB 400 ATP-dependent protease ATP-binding subunit ClpX YP_751274.1 3103802 R 318167 CDS YP_751275.1 114563762 4279503 complement(3105213..3105824) 1 NC_008345.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 3105824 clpP 4279503 clpP Shewanella frigidimarina NCIMB 400 ATP-dependent Clp protease proteolytic subunit YP_751275.1 3105213 R 318167 CDS YP_751276.1 114563763 4279504 complement(3105915..3107219) 1 NC_008345.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 3107219 tig 4279504 tig Shewanella frigidimarina NCIMB 400 trigger factor YP_751276.1 3105915 R 318167 CDS YP_751277.1 114563764 4279505 3108228..3109082 1 NC_008345.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3109082 4279505 Sfri_2598 Shewanella frigidimarina NCIMB 400 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_751277.1 3108228 D 318167 CDS YP_751278.1 114563765 4279506 complement(3109182..3110564) 1 NC_008345.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 3110564 cysS 4279506 cysS Shewanella frigidimarina NCIMB 400 cysteinyl-tRNA synthetase YP_751278.1 3109182 R 318167 CDS YP_751279.1 114563766 4279507 3110708..3111202 1 NC_008345.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO1790 peptidyl-prolyl cis-trans isomerase B; cyclophilin type peptidyl-prolyl cis-trans isomerase 3111202 4279507 Sfri_2600 Shewanella frigidimarina NCIMB 400 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_751279.1 3110708 D 318167 CDS YP_751280.1 114563767 4279508 3111205..3111930 1 NC_008345.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 3111930 4279508 Sfri_2601 Shewanella frigidimarina NCIMB 400 UDP-2,3-diacylglucosamine hydrolase YP_751280.1 3111205 D 318167 CDS YP_751281.1 114563768 4279509 complement(3111996..3112664) 1 NC_008345.1 PFAM: tRNA hydroxylase; KEGG: son:SO1788 tRNA-hydroxylase; tRNA hydroxylase 3112664 4279509 Sfri_2602 Shewanella frigidimarina NCIMB 400 tRNA hydroxylase YP_751281.1 3111996 R 318167 CDS YP_751282.1 114563769 4279510 3112786..3114339 1 NC_008345.1 KEGG: ilo:IL0684 hypothetical protein; hypothetical protein 3114339 4279510 Sfri_2603 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751282.1 3112786 D 318167 CDS YP_751283.1 114563770 4279511 complement(3114622..3115611) 1 NC_008345.1 hypothetical protein 3115611 4279511 Sfri_2604 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751283.1 3114622 R 318167 CDS YP_751284.1 114563771 4279512 complement(3115621..3118884) 1 NC_008345.1 PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain protein; KEGG: pha:PSHAa2091 type I restriction-modification system endonuclease; DEAD/DEAH box helicase motif; type III restriction enzyme, res subunit 3118884 4279512 Sfri_2605 Shewanella frigidimarina NCIMB 400 type III restriction enzyme, res subunit YP_751284.1 3115621 R 318167 CDS YP_751285.1 114563772 4279513 complement(3118894..3120039) 1 NC_008345.1 KEGG: bfr:BF2854 hypothetical protein; hypothetical protein 3120039 4279513 Sfri_2606 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751285.1 3118894 R 318167 CDS YP_751286.1 114563773 4279514 complement(3120040..3121428) 1 NC_008345.1 PFAM: restriction modification system DNA specificity domain; KEGG: pha:PSHAa2093 type I restriction-modification system, S subunit; restriction modification system DNA specificity subunit 3121428 4279514 Sfri_2607 Shewanella frigidimarina NCIMB 400 restriction modification system DNA specificity subunit YP_751286.1 3120040 R 318167 CDS YP_751287.1 114563774 4279515 complement(3121428..3123479) 1 NC_008345.1 PFAM: N-6 DNA methylase; KEGG: pha:PSHAa2094 type I restriction-modification system, M subunit; N-6 adenine-specific DNA methylase; N-6 DNA methylase 3123479 4279515 Sfri_2608 Shewanella frigidimarina NCIMB 400 N-6 DNA methylase YP_751287.1 3121428 R 318167 CDS YP_751288.1 114563775 4279516 3123719..3124207 1 NC_008345.1 hypothetical protein 3124207 4279516 Sfri_2609 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751288.1 3123719 D 318167 CDS YP_751289.1 114563776 4279517 3124210..3125061 1 NC_008345.1 PFAM: plasmid recombination enzyme; KEGG: ana:alr9001 similar to mobilization protein; plasmid recombination enzyme 3125061 4279517 Sfri_2610 Shewanella frigidimarina NCIMB 400 plasmid recombination enzyme YP_751289.1 3124210 D 318167 CDS YP_751290.1 114563777 4279518 complement(3125182..3125943) 1 NC_008345.1 PFAM: tRNA hydroxylase; KEGG: pha:PSHAa2068 tRNA-hydroxylase; tRNA hydroxylase 3125943 4279518 Sfri_2611 Shewanella frigidimarina NCIMB 400 tRNA hydroxylase YP_751290.1 3125182 R 318167 CDS YP_751291.1 114563778 4279519 complement(3125945..3127750) 1 NC_008345.1 PFAM: Recombinase; KEGG: pst:PSPTO2317 hypothetical protein; recombinase 3127750 4279519 Sfri_2612 Shewanella frigidimarina NCIMB 400 recombinase YP_751291.1 3125945 R 318167 CDS YP_751292.1 114563779 4279520 complement(3127722..3127877) 1 NC_008345.1 KEGG: ppr:PBPRA2472 putative tRNA-(MSA)-hydroxylase; putative tRNA-(MSA)-hydroxylase 3127877 4279520 Sfri_2613 Shewanella frigidimarina NCIMB 400 putative tRNA-(MSA)-hydroxylase YP_751292.1 3127722 R 318167 CDS YP_751293.1 114563780 4279521 3128237..3128833 1 NC_008345.1 PFAM: protein of unknown function DUF1282; KEGG: son:SO1787 hypothetical protein; hypothetical protein 3128833 4279521 Sfri_2614 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751293.1 3128237 D 318167 CDS YP_751294.1 114563781 4279522 complement(3128902..3130572) 1 NC_008345.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 3130572 4279522 Sfri_2615 Shewanella frigidimarina NCIMB 400 glutaminyl-tRNA synthetase YP_751294.1 3128902 R 318167 CDS YP_751295.1 114563782 4279523 complement(3130731..3133043) 1 NC_008345.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: son:SO1784 ferrous iron transport protein B; ferrous iron transport protein B 3133043 4279523 Sfri_2616 Shewanella frigidimarina NCIMB 400 ferrous iron transport protein B YP_751295.1 3130731 R 318167 CDS YP_751296.1 114563783 4279524 complement(3133036..3133275) 1 NC_008345.1 PFAM: FeoA family protein; KEGG: son:SO1783 ferrous iron transport protein A; FeoA family protein 3133275 4279524 Sfri_2617 Shewanella frigidimarina NCIMB 400 FeoA family protein YP_751296.1 3133036 R 318167 CDS YP_751297.1 114563784 4279525 complement(3133476..3134012) 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1834 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3134012 4279525 Sfri_2618 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_751297.1 3133476 R 318167 CDS YP_751298.1 114563785 4279526 complement(3134082..3134360) 1 NC_008345.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1832 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase 3134360 4279526 Sfri_2619 Shewanella frigidimarina NCIMB 400 PpiC-type peptidyl-prolyl cis-trans isomerase YP_751298.1 3134082 R 318167 CDS YP_751299.1 114563786 4279527 complement(3134454..3136283) 1 NC_008345.1 PFAM: protein of unknown function DUF885; KEGG: son:SO1831 hypothetical protein; hypothetical protein 3136283 4279527 Sfri_2620 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751299.1 3134454 R 318167 CDS YP_751300.1 114563787 4279528 complement(3136860..3138107) 1 NC_008345.1 SMART: Tetratricopeptide domain protein; KEGG: son:SO1829 TPR domain protein; tetratricopeptide domain-containing protein 3138107 4279528 Sfri_2621 Shewanella frigidimarina NCIMB 400 tetratricopeptide domain-containing protein YP_751300.1 3136860 R 318167 CDS YP_751301.1 114563788 4279529 complement(3138107..3138727) 1 NC_008345.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO1828 TonB2 protein; TonB family protein 3138727 4279529 Sfri_2622 Shewanella frigidimarina NCIMB 400 TonB family protein YP_751301.1 3138107 R 318167 CDS YP_751302.1 114563789 4279530 complement(3138729..3139133) 1 NC_008345.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO1827 TonB system transport protein ExbD2; biopolymer transport protein ExbD/TolR 3139133 4279530 Sfri_2623 Shewanella frigidimarina NCIMB 400 biopolymer transport protein ExbD/TolR YP_751302.1 3138729 R 318167 CDS YP_751303.1 114563790 4279531 complement(3139147..3139674) 1 NC_008345.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO1826 TonB system transport protein ExbB2; MotA/TolQ/ExbB proton channel 3139674 4279531 Sfri_2624 Shewanella frigidimarina NCIMB 400 MotA/TolQ/ExbB proton channel YP_751303.1 3139147 R 318167 CDS YP_751304.1 114563791 4279532 complement(3139674..3141029) 1 NC_008345.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO1825 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 3141029 4279532 Sfri_2625 Shewanella frigidimarina NCIMB 400 MotA/TolQ/ExbB proton channel YP_751304.1 3139674 R 318167 CDS YP_751305.1 114563792 4279533 complement(3141029..3141811) 1 NC_008345.1 KEGG: son:SO1824 hypothetical protein; hypothetical protein 3141811 4279533 Sfri_2626 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751305.1 3141029 R 318167 CDS YP_751306.1 114563793 4279534 complement(3142196..3143155) 1 NC_008345.1 PFAM: Methyltransferase type 11; KEGG: pha:PSHAa1988 S-adenosyl-L-methionine-dependent methyltransferase; methyltransferase type 11 3143155 4279534 Sfri_2627 Shewanella frigidimarina NCIMB 400 methyltransferase type 11 YP_751306.1 3142196 R 318167 CDS YP_751307.1 114563794 4279535 complement(3143255..3145861) 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: vpa:VP0168 putative iron complex outermembrane recepter protein; TonB-dependent receptor 3145861 4279535 Sfri_2628 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor YP_751307.1 3143255 R 318167 CDS YP_751308.1 114563795 4279536 complement(3146439..3148817) 1 NC_008345.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 3148817 4279536 Sfri_2629 Shewanella frigidimarina NCIMB 400 DNA polymerase II YP_751308.1 3146439 R 318167 CDS YP_751309.1 114563796 4279537 3148953..3151028 1 NC_008345.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 3151028 dinG 4279537 dinG Shewanella frigidimarina NCIMB 400 ATP-dependent DNA helicase DinG YP_751309.1 3148953 D 318167 CDS YP_751310.1 114563797 4279538 3151037..3151810 1 NC_008345.1 PFAM: protein of unknown function DUF81; KEGG: son:SO1818 hypothetical protein; hypothetical protein 3151810 4279538 Sfri_2631 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751310.1 3151037 D 318167 CDS YP_751311.1 114563798 4279539 3151807..3152469 1 NC_008345.1 KEGG: son:SO1817 primosomal replication protein N'', putative; primosomal replication protein N'' 3152469 4279539 Sfri_2632 Shewanella frigidimarina NCIMB 400 primosomal replication protein N'' YP_751311.1 3151807 D 318167 CDS YP_751312.1 114563799 4279540 3152479..3153201 1 NC_008345.1 KEGG: son:SO1816 hypothetical protein; hypothetical protein 3153201 4279540 Sfri_2633 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751312.1 3152479 D 318167 CDS YP_751313.1 114563800 4279541 3153201..3154124 1 NC_008345.1 PFAM: histone deacetylase superfamily; KEGG: son:SO1815 histone deacetylase/AcuC/AphA family protein; histone deacetylase superfamily protein 3154124 4279541 Sfri_2634 Shewanella frigidimarina NCIMB 400 histone deacetylase superfamily protein YP_751313.1 3153201 D 318167 CDS YP_751314.1 114563801 4279542 3154223..3154525 1 NC_008345.1 KEGG: son:SO1814 hypothetical protein; hypothetical protein 3154525 4279542 Sfri_2635 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751314.1 3154223 D 318167 CDS YP_751315.1 114563802 4279543 3155410..3157584 1 NC_008345.1 KEGG: son:SO1779 decaheme cytochrome c; decaheme cytochrome c 3157584 4279543 Sfri_2636 Shewanella frigidimarina NCIMB 400 decaheme cytochrome c YP_751315.1 3155410 D 318167 CDS YP_751316.1 114563803 4279544 3157872..3159833 1 NC_008345.1 KEGG: son:SO1778 decaheme cytochrome c; decaheme cytochrome c 3159833 4279544 Sfri_2637 Shewanella frigidimarina NCIMB 400 decaheme cytochrome c YP_751316.1 3157872 D 318167 CDS YP_751317.1 114563804 4279545 3159931..3160920 1 NC_008345.1 TIGRFAM: cytochrome C family protein; KEGG: son:SO1777 decaheme cytochrome c MtrA; cytochrome C family protein 3160920 4279545 Sfri_2638 Shewanella frigidimarina NCIMB 400 cytochrome C family protein YP_751317.1 3159931 D 318167 CDS YP_751318.1 114563805 4279546 3160933..3163020 1 NC_008345.1 KEGG: son:SO1776 outer membrane protein precursor MtrB; outer membrane protein precursor MtrB 3163020 4279546 Sfri_2639 Shewanella frigidimarina NCIMB 400 outer membrane protein precursor MtrB YP_751318.1 3160933 D 318167 CDS YP_751319.1 114563806 4279547 3163305..3164546 1 NC_008345.1 PFAM: sugar diacid recognition domain protein; KEGG: son:SO1774 hypothetical sugar diacid utilization regulator; transcriptional regulator CdaR 3164546 4279547 Sfri_2640 Shewanella frigidimarina NCIMB 400 transcriptional regulator CdaR YP_751319.1 3163305 D 318167 CDS YP_751320.1 114563807 4279548 3164676..3166034 1 NC_008345.1 PFAM: Gluconate transporter; Citrate transporter; KEGG: son:SO1771 permease, GntP family; gluconate transporter 3166034 4279548 Sfri_2641 Shewanella frigidimarina NCIMB 400 gluconate transporter YP_751320.1 3164676 D 318167 CDS YP_751321.1 114563808 4279549 3166055..3167224 1 NC_008345.1 PFAM: glycerate kinase; KEGG: son:SO1770 glycerate kinase; glycerate kinase 3167224 4279549 Sfri_2642 Shewanella frigidimarina NCIMB 400 glycerate kinase YP_751321.1 3166055 D 318167 CDS YP_751322.1 114563809 4279550 3167455..3169095 1 NC_008345.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: son:SO1769 glutamate decarboxylase, putative; pyridoxal-dependent decarboxylase 3169095 4279550 Sfri_2643 Shewanella frigidimarina NCIMB 400 pyridoxal-dependent decarboxylase YP_751322.1 3167455 D 318167 CDS YP_751323.1 114563810 4279551 complement(3169816..3170859) 1 NC_008345.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: son:SO4548 transposase, IS110 family; transposase IS116/IS110/IS902 family protein 3170859 4279551 Sfri_2644 Shewanella frigidimarina NCIMB 400 transposase IS116/IS110/IS902 family protein YP_751323.1 3169816 R 318167 CDS YP_751324.1 114563811 4279552 3171108..3171365 1 NC_008345.1 KEGG: vvy:VVA1570 putative integrase; hypothetical protein 3171365 4279552 Sfri_2645 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751324.1 3171108 D 318167 CDS YP_751325.1 114563812 4279553 complement(3171384..3173051) 1 NC_008345.1 hypothetical protein 3173051 4279553 Sfri_2646 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751325.1 3171384 R 318167 CDS YP_751326.1 114563813 4279554 complement(3174808..3175356) 1 NC_008345.1 KEGG: son:SO1862 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3175356 4279554 Sfri_2647 Shewanella frigidimarina NCIMB 400 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_751326.1 3174808 R 318167 CDS YP_751327.1 114563814 4279555 complement(3175401..3177233) 1 NC_008345.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 3177233 uvrC 4279555 uvrC Shewanella frigidimarina NCIMB 400 excinuclease ABC subunit C YP_751327.1 3175401 R 318167 CDS YP_751328.1 114563815 4279556 complement(3177278..3177922) 1 NC_008345.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 3177922 4279556 Sfri_2649 Shewanella frigidimarina NCIMB 400 response regulator YP_751328.1 3177278 R 318167 CDS YP_751329.1 114563816 4279557 complement(3178173..3178592) 1 NC_008345.1 PFAM: protein of unknown function UPF0047; KEGG: eca:ECA3688 hypothetical protein; hypothetical protein 3178592 4279557 Sfri_2650 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751329.1 3178173 R 318167 CDS YP_751330.1 114563817 4279558 complement(3179103..3180938) 1 NC_008345.1 SMART: PKD domain containing protein; KEGG: vfi:VFA0516 hypothetical protein; PKD domain-containing protein 3180938 4279558 Sfri_2651 Shewanella frigidimarina NCIMB 400 PKD domain-containing protein YP_751330.1 3179103 R 318167 CDS YP_751331.1 114563818 4279559 complement(3181360..3183111) 1 NC_008345.1 KEGG: ppr:PBPRA1203 putative PTS system, glucose-specific IIBC; TIGRFAM: PTS system, glucose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; PTS system glucose-specific transporter subunit IIBC 3183111 4279559 Sfri_2652 Shewanella frigidimarina NCIMB 400 PTS system glucose-specific transporter subunit IIBC YP_751331.1 3181360 R 318167 CDS YP_751332.1 114563819 4279560 complement(3183149..3184198) 1 NC_008345.1 PFAM: PEP-utilizing enzyme; KEGG: pst:PSPTO0954 phosphoenolpyruvate-protein phosphotransferase,EI/HPr/EIIA components; PEP-utilizing protein 3184198 4279560 Sfri_2653 Shewanella frigidimarina NCIMB 400 PEP-utilizing protein YP_751332.1 3183149 R 318167 CDS YP_751333.1 114563820 4279561 complement(3184412..3186556) 1 NC_008345.1 KEGG: cps:CPS_3258 sensory box/GGDEF/GAF/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3186556 4279561 Sfri_2654 Shewanella frigidimarina NCIMB 400 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_751333.1 3184412 R 318167 CDS YP_751334.1 114563821 4279562 3188023..3189813 1 NC_008345.1 KEGG: son:SO1857 hypothetical ATP-dependent protease; ATP-dependent protease 3189813 4279562 Sfri_2655 Shewanella frigidimarina NCIMB 400 ATP-dependent protease YP_751334.1 3188023 D 318167 CDS YP_751335.1 114563822 4279563 3189889..3190404 1 NC_008345.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 3190404 4279563 Sfri_2656 Shewanella frigidimarina NCIMB 400 3-hydroxydecanoyl-ACP dehydratase YP_751335.1 3189889 D 318167 CDS YP_751336.1 114563823 4279564 complement(3190501..3190677) 1 NC_008345.1 PFAM: ribosome modulation factor; KEGG: son:SO1855 ribosome modulation factor; ribosome modulation factor 3190677 4279564 Sfri_2657 Shewanella frigidimarina NCIMB 400 ribosome modulation factor YP_751336.1 3190501 R 318167 CDS YP_751337.1 114563824 4279565 complement(3190929..3192818) 1 NC_008345.1 KEGG: son:SO1854 hypothetical protein; hypothetical protein 3192818 4279565 Sfri_2658 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751337.1 3190929 R 318167 CDS YP_751338.1 114563825 4279566 complement(3192844..3194760) 1 NC_008345.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 3194760 4279566 Sfri_2659 Shewanella frigidimarina NCIMB 400 ABC transporter ATPase YP_751338.1 3192844 R 318167 CDS YP_751339.1 114563826 4279567 complement(3194762..3194998) 1 NC_008345.1 PFAM: glutaredoxin 2; KEGG: son:SO1852 hypothetical protein; glutaredoxin 3194998 4279567 Sfri_2660 Shewanella frigidimarina NCIMB 400 glutaredoxin YP_751339.1 3194762 R 318167 CDS YP_751340.1 114563827 4279568 complement(3194985..3197123) 1 NC_008345.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 3197123 rlmL 4279568 rlmL Shewanella frigidimarina NCIMB 400 23S rRNA m(2)G2445 methyltransferase YP_751340.1 3194985 R 318167 CDS YP_751341.1 114563828 4279569 complement(3198655..3199017) 1 NC_008345.1 PFAM: Rhodanese domain protein; KEGG: ade:Adeh_0436 rhodanese-like; rhodanese domain-containing protein 3199017 4279569 Sfri_2662 Shewanella frigidimarina NCIMB 400 rhodanese domain-containing protein YP_751341.1 3198655 R 318167 CDS YP_751342.1 114563829 4279570 complement(3199399..3199941) 1 NC_008345.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO3075 RNA methyltransferase, TrmH family, putative; tRNA/rRNA methyltransferase SpoU 3199941 4279570 Sfri_2663 Shewanella frigidimarina NCIMB 400 tRNA/rRNA methyltransferase SpoU YP_751342.1 3199399 R 318167 CDS YP_751343.1 114563830 4279571 complement(3199965..3200243) 1 NC_008345.1 KEGG: son:SO3076 hypothetical protein; hypothetical protein 3200243 4279571 Sfri_2664 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751343.1 3199965 R 318167 CDS YP_751344.1 114563831 4279572 complement(3200247..3201398) 1 NC_008345.1 PFAM: ATP-NAD/AcoX kinase; KEGG: son:SO3077 hypothetical protein; ATP-NAD/AcoX kinase 3201398 4279572 Sfri_2665 Shewanella frigidimarina NCIMB 400 ATP-NAD/AcoX kinase YP_751344.1 3200247 R 318167 CDS YP_751345.1 114563832 4279573 complement(3201469..3202641) 1 NC_008345.1 PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: son:SO3078 major facilitator family protein, putative; major facilitator transporter 3202641 4279573 Sfri_2666 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_751345.1 3201469 R 318167 CDS YP_751346.1 114563833 4279574 complement(3202641..3203735) 1 NC_008345.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 3203735 4279574 Sfri_2667 Shewanella frigidimarina NCIMB 400 chorismate synthase YP_751346.1 3202641 R 318167 CDS YP_751347.1 114563834 4279575 complement(3203792..3204736) 1 NC_008345.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 3204736 4279575 Sfri_2668 Shewanella frigidimarina NCIMB 400 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_751347.1 3203792 R 318167 CDS YP_751348.1 114563835 4279576 3204816..3205343 1 NC_008345.1 PFAM: Smr protein/MutS2; KEGG: son:SO3081 Smr domain protein; hypothetical protein 3205343 4279576 Sfri_2669 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751348.1 3204816 D 318167 CDS YP_751349.1 114563836 4279577 complement(3205436..3205909) 1 NC_008345.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: son:SO3082 phosphohistidine phosphatase SixA; phosphohistidine phosphatase, SixA 3205909 4279577 Sfri_2670 Shewanella frigidimarina NCIMB 400 phosphohistidine phosphatase, SixA YP_751349.1 3205436 R 318167 CDS YP_751350.1 114563837 4279578 3206098..3208887 1 NC_008345.1 PFAM: peptidase M16 domain protein; KEGG: son:SO3083 peptidase, M16 family; peptidase M16 domain-containing protein 3208887 4279578 Sfri_2671 Shewanella frigidimarina NCIMB 400 peptidase M16 domain-containing protein YP_751350.1 3206098 D 318167 CDS YP_751351.1 114563838 4279579 3209135..3213490 1 NC_008345.1 KEGG: son:SO3084 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 3213490 4279579 Sfri_2672 Shewanella frigidimarina NCIMB 400 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_751351.1 3209135 D 318167 CDS YP_751352.1 114563839 4279580 3213513..3214394 1 NC_008345.1 KEGG: hsa:176 aggrecan 1 (chondroitin sulfate proteoglycan 1, large aggregating proteoglycan, antigen identified by monoclonal antibody A0122); hypothetical protein 3214394 4279580 Sfri_2673 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751352.1 3213513 D 318167 CDS YP_751353.1 114565217 4280958 3214405..3214521 1 NC_008345.1 hypothetical protein 3214521 4280958 Sfri_4067 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751353.1 3214405 D 318167 CDS YP_751354.1 114563840 4279581 complement(3214631..3214843) 1 NC_008345.1 KEGG: sdn:Sden_1531 hypothetical protein; hypothetical protein 3214843 4279581 Sfri_2675 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751354.1 3214631 R 318167 CDS YP_751355.1 114563841 4279582 complement(3215158..3217290) 1 NC_008345.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 3217290 fadJ 4279582 fadJ Shewanella frigidimarina NCIMB 400 multifunctional fatty acid oxidation complex subunit alpha YP_751355.1 3215158 R 318167 CDS YP_751356.1 114563842 4279583 complement(3217290..3218600) 1 NC_008345.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 3218600 fadI 4279583 fadI Shewanella frigidimarina NCIMB 400 3-ketoacyl-CoA thiolase YP_751356.1 3217290 R 318167 CDS YP_751357.1 114563843 4279584 3218850..3219806 1 NC_008345.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: son:SO3090 MoxR domain protein; ATPase 3219806 4279584 Sfri_2678 Shewanella frigidimarina NCIMB 400 ATPase YP_751357.1 3218850 D 318167 CDS YP_751358.1 114563844 4279585 3219848..3220783 1 NC_008345.1 PFAM: protein of unknown function DUF58; KEGG: son:SO3091 hypothetical protein; hypothetical protein 3220783 4279585 Sfri_2679 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751358.1 3219848 D 318167 CDS YP_751359.1 114563845 4279586 3220784..3221332 1 NC_008345.1 KEGG: son:SO3092 hypothetical protein; hypothetical protein 3221332 4279586 Sfri_2680 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751359.1 3220784 D 318167 CDS YP_751360.1 114563846 4279587 3221326..3222330 1 NC_008345.1 PFAM: von Willebrand factor, type A; KEGG: son:SO3093 von Willebrand factor type A domain protein; von Willebrand factor, type A 3222330 4279587 Sfri_2681 Shewanella frigidimarina NCIMB 400 von Willebrand factor, type A YP_751360.1 3221326 D 318167 CDS YP_751361.1 114563847 4279588 3222330..3224435 1 NC_008345.1 PFAM: TPR repeat-containing protein; von Willebrand factor, type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO3094 TPR domain protein; hypothetical protein 3224435 4279588 Sfri_2682 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751361.1 3222330 D 318167 CDS YP_751362.1 114563848 4279589 3224429..3226063 1 NC_008345.1 KEGG: son:SO3095 hypothetical protein; hypothetical protein 3226063 4279589 Sfri_2683 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751362.1 3224429 D 318167 CDS YP_751363.1 114563849 4279590 3226165..3226728 1 NC_008345.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 3226728 4279590 Sfri_2684 Shewanella frigidimarina NCIMB 400 RNA polymerase sigma factor YP_751363.1 3226165 D 318167 CDS YP_751364.1 114563850 4279591 3226721..3227428 1 NC_008345.1 KEGG: son:SO3097 hypothetical protein; hypothetical protein 3227428 4279591 Sfri_2685 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751364.1 3226721 D 318167 CDS YP_751365.1 114563851 4279592 3227563..3229023 1 NC_008345.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: bha:BH0660 sodium/proline symporter; sodium/proline symporter 3229023 4279592 Sfri_2686 Shewanella frigidimarina NCIMB 400 sodium/proline symporter YP_751365.1 3227563 D 318167 CDS YP_751366.1 114563852 4279593 3229445..3230728 1 NC_008345.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO3099 long-chain fatty acid transport protein, putative; aromatic hydrocarbon degradation membrane protein 3230728 4279593 Sfri_2687 Shewanella frigidimarina NCIMB 400 aromatic hydrocarbon degradation membrane protein YP_751366.1 3229445 D 318167 CDS YP_751367.1 114563853 4279594 3230929..3231990 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3102 AcrA/AcrE family protein; RND family efflux transporter MFP subunit 3231990 4279594 Sfri_2688 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_751367.1 3230929 D 318167 CDS YP_751368.1 114563854 4279595 3231996..3235256 1 NC_008345.1 PFAM: acriflavin resistance protein; KEGG: son:SO3103 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 3235256 4279595 Sfri_2689 Shewanella frigidimarina NCIMB 400 acriflavin resistance protein YP_751368.1 3231996 D 318167 CDS YP_751369.1 114563855 4279596 3235301..3235513 1 NC_008345.1 KEGG: son:SO3104 hypothetical protein; hypothetical protein 3235513 4279596 Sfri_2690 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751369.1 3235301 D 318167 CDS YP_751370.1 114563856 4279597 3235527..3235904 1 NC_008345.1 PFAM: Rhodanese domain protein; KEGG: son:SO3105 phage shock protein E; rhodanese domain-containing protein 3235904 4279597 Sfri_2691 Shewanella frigidimarina NCIMB 400 rhodanese domain-containing protein YP_751370.1 3235527 D 318167 CDS YP_751371.1 114563857 4279598 3236368..3238824 1 NC_008345.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: son:SO3106 cold-active serine alkaline protease; peptidase S8/S53 subtilisin kexin sedolisin 3238824 4279598 Sfri_2692 Shewanella frigidimarina NCIMB 400 peptidase S8/S53 subtilisin kexin sedolisin YP_751371.1 3236368 D 318167 CDS YP_751372.1 114563858 4279599 complement(3238906..3239553) 1 NC_008345.1 PFAM: CBS domain containing protein; KEGG: cps:CPS_1349 CBS domain protein; hypothetical protein 3239553 4279599 Sfri_2693 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751372.1 3238906 R 318167 CDS YP_751373.1 114563859 4279600 complement(3239741..3240277) 1 NC_008345.1 PFAM: YaeQ family protein; KEGG: son:SO3107 hypothetical protein; YaeQ family protein 3240277 4279600 Sfri_2694 Shewanella frigidimarina NCIMB 400 YaeQ family protein YP_751373.1 3239741 R 318167 CDS YP_751374.1 114563860 4279601 complement(3240357..3241268) 1 NC_008345.1 TIGRFAM: siroheme synthase; KEGG: son:SO3108 precorrin-2 oxidase / ferrochelatase; siroheme synthase 3241268 4279601 Sfri_2695 Shewanella frigidimarina NCIMB 400 siroheme synthase YP_751374.1 3240357 R 318167 CDS YP_751375.1 114563861 4279602 complement(3241277..3241636) 1 NC_008345.1 PFAM: Rhodanese domain protein; KEGG: cya:CYA_1705 rhodanese domain protein; rhodanese domain-containing protein 3241636 4279602 Sfri_2696 Shewanella frigidimarina NCIMB 400 rhodanese domain-containing protein YP_751375.1 3241277 R 318167 CDS YP_751376.1 114563862 4279603 complement(3242024..3242344) 1 NC_008345.1 KEGG: son:SO3109 hypothetical protein; hypothetical protein 3242344 4279603 Sfri_2697 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751376.1 3242024 R 318167 CDS YP_751377.1 114563863 4279604 3242551..3242952 1 NC_008345.1 KEGG: sde:Sde_2410 hypothetical protein; hypothetical protein 3242952 4279604 Sfri_2698 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751377.1 3242551 D 318167 CDS YP_751378.1 114563864 4279605 complement(3243220..3244167) 1 NC_008345.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 3244167 secF 4279605 secF Shewanella frigidimarina NCIMB 400 preprotein translocase subunit SecF YP_751378.1 3243220 R 318167 CDS YP_751379.1 114563865 4279606 complement(3244182..3246032) 1 NC_008345.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 3246032 secD 4279606 secD Shewanella frigidimarina NCIMB 400 preprotein translocase subunit SecD YP_751379.1 3244182 R 318167 CDS YP_751380.1 114563866 4279607 complement(3246050..3246382) 1 NC_008345.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 3246382 yajC 4279607 yajC Shewanella frigidimarina NCIMB 400 preprotein translocase subunit YajC YP_751380.1 3246050 R 318167 CDS YP_751381.1 114563867 4279608 complement(3246408..3247532) 1 NC_008345.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 3247532 tgt 4279608 tgt Shewanella frigidimarina NCIMB 400 queuine tRNA-ribosyltransferase YP_751381.1 3246408 R 318167 CDS YP_751382.1 114563868 4279609 complement(3247675..3248715) 1 NC_008345.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 3248715 queA 4279609 queA Shewanella frigidimarina NCIMB 400 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_751382.1 3247675 R 318167 CDS YP_751383.1 114563869 4279610 3249167..3249763 1 NC_008345.1 PFAM: protein of unknown function DUF479; KEGG: son:SO3116 hypothetical protein; hypothetical protein 3249763 4279610 Sfri_2704 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751383.1 3249167 D 318167 CDS YP_751384.1 114563870 4279611 3249793..3250374 1 NC_008345.1 PFAM: Redoxin domain protein; KEGG: son:SO3117 thioredoxin, putative; redoxin domain-containing protein 3250374 4279611 Sfri_2705 Shewanella frigidimarina NCIMB 400 redoxin domain-containing protein YP_751384.1 3249793 D 318167 CDS YP_751385.1 114563871 4279612 3250526..3251179 1 NC_008345.1 PFAM: pseudouridine synthase; KEGG: hch:HCH_04661 pseudouridylate synthases, 23S RNA-specific; pseudouridine synthase 3251179 4279612 Sfri_2706 Shewanella frigidimarina NCIMB 400 pseudouridine synthase YP_751385.1 3250526 D 318167 CDS YP_751386.1 114563872 4279613 complement(3251637..3252878) 1 NC_008345.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3252878 4279613 Sfri_2707 Shewanella frigidimarina NCIMB 400 serine/threonine transporter SstT YP_751386.1 3251637 R 318167 CDS YP_751387.1 114563873 4279614 complement(3253383..3254285) 1 NC_008345.1 PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO3123 chemotaxis protein CheV; response regulator receiver modulated CheW protein 3254285 4279614 Sfri_2708 Shewanella frigidimarina NCIMB 400 response regulator receiver modulated CheW protein YP_751387.1 3253383 R 318167 CDS YP_751388.1 114563874 4279615 complement(3254784..3255263) 1 NC_008345.1 SMART: protein tyrosine phosphatase, catalytic region; KEGG: son:SO3124 tyrosine-specific protein phosphatase, putative; dual specificity protein phosphatase 3255263 4279615 Sfri_2709 Shewanella frigidimarina NCIMB 400 dual specificity protein phosphatase YP_751388.1 3254784 R 318167 CDS YP_751389.1 114563875 4279616 complement(3255275..3256561) 1 NC_008345.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: ppr:PBPRB0199 putative ATP-dependent RNA helicase; DEAD/DEAH box helicase 3256561 4279616 Sfri_2710 Shewanella frigidimarina NCIMB 400 DEAD/DEAH box helicase YP_751389.1 3255275 R 318167 CDS YP_751390.1 114563876 4279617 complement(3256634..3257185) 1 NC_008345.1 KEGG: son:SO3126 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 3257185 4279617 Sfri_2711 Shewanella frigidimarina NCIMB 400 methylated-DNA--protein-cysteine methyltransferase YP_751390.1 3256634 R 318167 CDS YP_751391.1 114563877 4279618 complement(3257190..3258725) 1 NC_008345.1 PFAM: helix-turn-helix- domain containing protein, AraC type; Ada, metal-binding domain protein; AlkA domain protein; SMART: HhH-GPD family protein; KEGG: son:SO3127 Ada regulatory protein, putative; AraC family transcriptional regulator 3258725 4279618 Sfri_2712 Shewanella frigidimarina NCIMB 400 AraC family transcriptional regulator YP_751391.1 3257190 R 318167 CDS YP_751392.1 114563878 4279619 3258938..3260767 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3128 ABC transporter, ATP-binding/permease protein, putative; ABC transporter 3260767 4279619 Sfri_2713 Shewanella frigidimarina NCIMB 400 ABC transporter YP_751392.1 3258938 D 318167 CDS YP_751393.1 114563879 4279620 3261885..3263294 1 NC_008345.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 3263294 gltX 4279620 gltX Shewanella frigidimarina NCIMB 400 glutamyl-tRNA synthetase YP_751393.1 3261885 D 318167 CDS YP_751394.1 114563880 4279621 3265560..3266579 1 NC_008345.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: son:SO3134 C4-dicarboxylate-binding periplasmic protein; TRAP dicarboxylate transporter, DctP subunit 3266579 4279621 Sfri_2715 Shewanella frigidimarina NCIMB 400 TRAP dicarboxylate transporter, DctP subunit YP_751394.1 3265560 D 318167 CDS YP_751395.1 114563881 4279622 3266603..3267304 1 NC_008345.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: son:SO3135 C4-dicarboxylate transporter, putative; tripartite ATP-independent periplasmic transporter DctQ 3267304 4279622 Sfri_2716 Shewanella frigidimarina NCIMB 400 tripartite ATP-independent periplasmic transporter DctQ YP_751395.1 3266603 D 318167 CDS YP_751396.1 114563882 4279623 3267304..3268701 1 NC_008345.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO3136 C4-dicarboxylate transport protein; TRAP dicarboxylate transporter, DctM subunit 3268701 4279623 Sfri_2717 Shewanella frigidimarina NCIMB 400 TRAP dicarboxylate transporter, DctM subunit YP_751396.1 3267304 D 318167 CDS YP_751397.1 114563883 4279624 3268802..3270598 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3136.1 hypothetical two-component sensor histidine kinase protein; periplasmic sensor signal transduction histidine kinase 3270598 4279624 Sfri_2718 Shewanella frigidimarina NCIMB 400 periplasmic sensor signal transduction histidine kinase YP_751397.1 3268802 D 318167 CDS YP_751398.1 114563884 4279625 3270601..3271974 1 NC_008345.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3138 C4-dicarboxylate transport transcriptional regulatory protein; Fis family two component sigma-54-specific transcriptional regulator 3271974 4279625 Sfri_2719 Shewanella frigidimarina NCIMB 400 Fis family two component sigma-54-specific transcriptional regulator YP_751398.1 3270601 D 318167 CDS YP_751399.1 114563885 4279626 complement(3271971..3273206) 1 NC_008345.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1917 multidrug resistance protein, putative; major facilitator transporter 3273206 4279626 Sfri_2720 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_751399.1 3271971 R 318167 CDS YP_751400.1 114563886 4279627 complement(3273309..3273710) 1 NC_008345.1 KEGG: son:SO1913 hypothetical protein; hypothetical protein 3273710 4279627 Sfri_2721 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751400.1 3273309 R 318167 CDS YP_751401.1 114563887 4279628 complement(3273720..3274580) 1 NC_008345.1 KEGG: son:SO1912 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 3274580 4279628 Sfri_2722 Shewanella frigidimarina NCIMB 400 acyl-CoA thioesterase II YP_751401.1 3273720 R 318167 CDS YP_751402.1 114563888 4279629 3274788..3275681 1 NC_008345.1 TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: son:SO1910 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 3275681 4279629 Sfri_2723 Shewanella frigidimarina NCIMB 400 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_751402.1 3274788 D 318167 CDS YP_751403.1 114563889 4279630 complement(3275752..3277281) 1 NC_008345.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 3277281 4279630 Sfri_2724 Shewanella frigidimarina NCIMB 400 6-phosphogluconate dehydrogenase YP_751403.1 3275752 R 318167 CDS YP_751404.1 114563890 4279631 complement(3277535..3279451) 1 NC_008345.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mag:amb2304 acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; AMP-dependent synthetase and ligase 3279451 4279631 Sfri_2725 Shewanella frigidimarina NCIMB 400 AMP-dependent synthetase and ligase YP_751404.1 3277535 R 318167 CDS YP_751405.1 114563891 4279632 3279770..3280180 1 NC_008345.1 PFAM: regulatory protein, MerR; KEGG: son:SO1898 transcriptional regulator, putative; transcriptional regulator, MerR family protein 3280180 4279632 Sfri_2726 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MerR family protein YP_751405.1 3279770 D 318167 CDS YP_751406.1 114563892 4279633 3280306..3281475 1 NC_008345.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO1897 isovaleryl-CoA dehydrogenase; isovaleryl-CoA dehydrogenase 3281475 4279633 Sfri_2727 Shewanella frigidimarina NCIMB 400 isovaleryl-CoA dehydrogenase YP_751406.1 3280306 D 318167 CDS YP_751407.1 114563893 4279634 3281564..3283171 1 NC_008345.1 PFAM: carboxyl transferase; KEGG: son:SO1896 3-methylcrotonyl-CoA carboxylase beta subunit; propionyl-CoA carboxylase 3283171 4279634 Sfri_2728 Shewanella frigidimarina NCIMB 400 propionyl-CoA carboxylase YP_751407.1 3281564 D 318167 CDS YP_751408.1 114563894 4279635 3283210..3284022 1 NC_008345.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO1895 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 3284022 4279635 Sfri_2729 Shewanella frigidimarina NCIMB 400 enoyl-CoA hydratase/isomerase YP_751408.1 3283210 D 318167 CDS YP_751409.1 114563895 4279636 3284025..3286055 1 NC_008345.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO1894 3-methylcrotonyl-CoA carboxylase alpha subunit; carbamoyl-phosphate synthase subunit L 3286055 4279636 Sfri_2730 Shewanella frigidimarina NCIMB 400 carbamoyl-phosphate synthase subunit L YP_751409.1 3284025 D 318167 CDS YP_751410.1 114563896 4279637 3286056..3286946 1 NC_008345.1 PFAM: pyruvate carboxyltransferase; KEGG: son:SO1893 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase 3286946 4279637 Sfri_2731 Shewanella frigidimarina NCIMB 400 pyruvate carboxyltransferase YP_751410.1 3286056 D 318167 CDS YP_751411.1 114563897 4279638 3287013..3287717 1 NC_008345.1 KEGG: son:SO1892 acetate CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 3287717 4279638 Sfri_2732 Shewanella frigidimarina NCIMB 400 3-oxoacid CoA-transferase subunit A YP_751411.1 3287013 D 318167 CDS YP_751412.1 114563898 4279639 3287731..3288387 1 NC_008345.1 KEGG: son:SO1891 3-oxoacid CoA-transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 3288387 4279639 Sfri_2733 Shewanella frigidimarina NCIMB 400 3-oxoacid CoA-transferase subunit B YP_751412.1 3287731 D 318167 CDS YP_751413.1 114563899 4279640 complement(3288526..3289407) 1 NC_008345.1 KEGG: son:SO2355 universal stress protein family; hypothetical protein 3289407 4279640 Sfri_2734 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751413.1 3288526 R 318167 CDS YP_751414.1 114563900 4279641 3290639..3291190 1 NC_008345.1 PFAM: cation antiporter; KEGG: noc:Noc_1287 cation antiporter; cation antiporter 3291190 4279641 Sfri_2735 Shewanella frigidimarina NCIMB 400 cation antiporter YP_751414.1 3290639 D 318167 CDS YP_751415.1 114563901 4279642 3291369..3291647 1 NC_008345.1 KEGG: noc:Noc_1286 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 3291647 4279642 Sfri_2736 Shewanella frigidimarina NCIMB 400 multiple resistance and pH regulation protein F YP_751415.1 3291369 D 318167 CDS YP_751416.1 114563902 4279643 3291634..3291933 1 NC_008345.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 3291933 4279643 Sfri_2737 Shewanella frigidimarina NCIMB 400 putative monovalent cation/H+ antiporter subunit G YP_751416.1 3291634 D 318167 CDS YP_751417.1 114563903 4279644 3291921..3292253 1 NC_008345.1 KEGG: noc:Noc_1284 hypothetical protein; hypothetical protein 3292253 4279644 Sfri_2738 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751417.1 3291921 D 318167 CDS YP_751418.1 114563904 4279645 3292427..3293083 1 NC_008345.1 KEGG: bja:blr7318 hypothetical protein; hypothetical protein 3293083 4279645 Sfri_2739 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751418.1 3292427 D 318167 CDS YP_751419.1 114563905 4279646 3293083..3293391 1 NC_008345.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: noc:Noc_1282 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase, chain 4L 3293391 4279646 Sfri_2740 Shewanella frigidimarina NCIMB 400 NADH-ubiquinone oxidoreductase, chain 4L YP_751419.1 3293083 D 318167 CDS YP_751420.1 114563906 4279647 3293681..3295129 1 NC_008345.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1281 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 3295129 4279647 Sfri_2741 Shewanella frigidimarina NCIMB 400 NADH dehydrogenase (quinone) YP_751420.1 3293681 D 318167 CDS YP_751421.1 114563907 4279648 3295126..3296619 1 NC_008345.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1280 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 3296619 4279648 Sfri_2742 Shewanella frigidimarina NCIMB 400 NADH dehydrogenase (quinone) YP_751421.1 3295126 D 318167 CDS YP_751422.1 114563908 4279649 3296619..3297920 1 NC_008345.1 KEGG: noc:Noc_1279 NADH/ubiquinone/plastoquinone (complex I); formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter MnhD subunit-like protein 3297920 4279649 Sfri_2743 Shewanella frigidimarina NCIMB 400 formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter MnhD subunit-like protein YP_751422.1 3296619 D 318167 CDS YP_751423.1 114563909 4279650 3298451..3300241 1 NC_008345.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: son:SO2768 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 3300241 4279650 Sfri_2744 Shewanella frigidimarina NCIMB 400 acyl-CoA dehydrogenase domain-containing protein YP_751423.1 3298451 D 318167 CDS YP_751424.1 114563910 4279651 complement(3300316..3300894) 1 NC_008345.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 3300894 4279651 Sfri_2745 Shewanella frigidimarina NCIMB 400 thymidine kinase YP_751424.1 3300316 R 318167 CDS YP_751425.1 114563911 4279652 complement(3301054..3302610) 1 NC_008345.1 PFAM: Na+/H+ antiporter NhaC; KEGG: vfi:VF1630 Na(+)/H(+) antiporter; Na+/H+ antiporter NhaC 3302610 4279652 Sfri_2746 Shewanella frigidimarina NCIMB 400 Na+/H+ antiporter NhaC YP_751425.1 3301054 R 318167 CDS YP_751426.1 114563912 4279653 complement(3303312..3304235) 1 NC_008345.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: son:SO3144 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 3304235 4279653 Sfri_2747 Shewanella frigidimarina NCIMB 400 electron transfer flavoprotein subunit alpha YP_751426.1 3303312 R 318167 CDS YP_751427.1 114563913 4279654 complement(3304237..3304986) 1 NC_008345.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: son:SO3145 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein subunit beta 3304986 4279654 Sfri_2748 Shewanella frigidimarina NCIMB 400 electron transfer flavoprotein subunit beta YP_751427.1 3304237 R 318167 CDS YP_751428.1 114563914 4279655 3305422..3305832 1 NC_008345.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: son:SO3146 DNA-binding protein, H-NS family; histone family protein nucleoid-structuring protein H-NS 3305832 4279655 Sfri_2749 Shewanella frigidimarina NCIMB 400 histone family protein nucleoid-structuring protein H-NS YP_751428.1 3305422 D 318167 CDS YP_751429.1 114563915 4279656 3305995..3306390 1 NC_008345.1 KEGG: son:SO3150 lipoprotein, putative; putative lipoprotein 3306390 4279656 Sfri_2750 Shewanella frigidimarina NCIMB 400 putative lipoprotein YP_751429.1 3305995 D 318167 CDS YP_751430.1 114563916 4279657 3306504..3307292 1 NC_008345.1 PFAM: protein of unknown function UPF0066; KEGG: son:SO3151 hypothetical protein; hypothetical protein 3307292 4279657 Sfri_2751 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751430.1 3306504 D 318167 CDS YP_751431.1 114563917 4279658 3307297..3307911 1 NC_008345.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO3152 acetyltransferase, CysE/LacA/LpxA/NodL family; hexapaptide repeat-containing transferase 3307911 4279658 Sfri_2752 Shewanella frigidimarina NCIMB 400 hexapaptide repeat-containing transferase YP_751431.1 3307297 D 318167 CDS YP_751432.1 114563918 4279659 3308026..3309741 1 NC_008345.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3309741 4279659 Sfri_2753 Shewanella frigidimarina NCIMB 400 prolyl-tRNA synthetase YP_751432.1 3308026 D 318167 CDS YP_751433.1 114563919 4279660 complement(3309807..3311207) 1 NC_008345.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3162 sensor histidine kinase; GAF sensor signal transduction histidine kinase 3311207 4279660 Sfri_2754 Shewanella frigidimarina NCIMB 400 GAF sensor signal transduction histidine kinase YP_751433.1 3309807 R 318167 CDS YP_751434.1 114563920 4279661 complement(3311182..3312744) 1 NC_008345.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: vvu:VV20465 response regulator; response regulator receiver modulated metal dependent phosphohydrolase 3312744 4279661 Sfri_2755 Shewanella frigidimarina NCIMB 400 response regulator receiver modulated metal dependent phosphohydrolase YP_751434.1 3311182 R 318167 CDS YP_751435.1 114563921 4279662 3313102..3314235 1 NC_008345.1 PFAM: Patatin; KEGG: son:SO3155 hypothetical protein; patatin 3314235 4279662 Sfri_2756 Shewanella frigidimarina NCIMB 400 patatin YP_751435.1 3313102 D 318167 CDS YP_751436.1 114563922 4279663 3314537..3314968 1 NC_008345.1 KEGG: son:SO3163 lipoprotein; hypothetical protein 3314968 4279663 Sfri_2757 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751436.1 3314537 D 318167 CDS YP_751437.1 114563923 4279664 3315042..3315929 1 NC_008345.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cvi:CV4012 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 3315929 4279664 Sfri_2758 Shewanella frigidimarina NCIMB 400 glucose-1-phosphate thymidylyltransferase YP_751437.1 3315042 D 318167 CDS YP_751438.1 114563924 4279665 3315916..3316485 1 NC_008345.1 KEGG: son:SO3160 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 3316485 4279665 Sfri_2759 Shewanella frigidimarina NCIMB 400 dTDP-4-dehydrorhamnose 3,5-epimerase YP_751438.1 3315916 D 318167 CDS YP_751439.1 114563925 4279666 3316482..3317513 1 NC_008345.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO3167 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 3317513 4279666 Sfri_2760 Shewanella frigidimarina NCIMB 400 dTDP-glucose 4,6-dehydratase YP_751439.1 3316482 D 318167 CDS YP_751440.1 114563926 4279667 3317510..3318412 1 NC_008345.1 PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: syf:Synpcc7942_2099 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 3318412 4279667 Sfri_2761 Shewanella frigidimarina NCIMB 400 dTDP-4-dehydrorhamnose reductase YP_751440.1 3317510 D 318167 CDS YP_751441.1 114563927 4279668 3318558..3318728 1 NC_008345.1 KEGG: son:SO1572 hypothetical protein; hypothetical protein 3318728 4279668 Sfri_2762 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751441.1 3318558 D 318167 CDS YP_751442.1 114563928 4279669 complement(3318883..3320280) 1 NC_008345.1 PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO1565 magnesium transporter, putative; MgtE integral membrane protein 3320280 4279669 Sfri_2763 Shewanella frigidimarina NCIMB 400 MgtE integral membrane protein YP_751442.1 3318883 R 318167 CDS YP_751443.1 114563929 4279670 3320431..3320916 1 NC_008345.1 PFAM: glutathione peroxidase; KEGG: son:SO1563 glutathione peroxidase; glutathione peroxidase 3320916 4279670 Sfri_2764 Shewanella frigidimarina NCIMB 400 glutathione peroxidase YP_751443.1 3320431 D 318167 CDS YP_751444.1 114563930 4279671 complement(3323277..3325058) 1 NC_008345.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1561 peptidase, M1 family; peptidase M1, membrane alanine aminopeptidase 3325058 4279671 Sfri_2765 Shewanella frigidimarina NCIMB 400 peptidase M1, membrane alanine aminopeptidase YP_751444.1 3323277 R 318167 CDS YP_751445.1 114563931 4279672 complement(3325621..3326592) 1 NC_008345.1 TIGRFAM: phosphate binding protein; KEGG: son:SO1560 phosphate-binding protein; phosphate binding protein 3326592 4279672 Sfri_2766 Shewanella frigidimarina NCIMB 400 phosphate binding protein YP_751445.1 3325621 R 318167 CDS YP_751446.1 114563932 4279673 complement(3327068..3328363) 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: son:SO1559 phosphate regulon sensor protein PhoR; PAS/PAC sensor signal transduction histidine kinase 3328363 4279673 Sfri_2767 Shewanella frigidimarina NCIMB 400 PAS/PAC sensor signal transduction histidine kinase YP_751446.1 3327068 R 318167 CDS YP_751447.1 114563933 4279674 complement(3328540..3329229) 1 NC_008345.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1558 phosphate regulon response regulator PhoB; two component transcriptional regulator, winged helix family protein 3329229 4279674 Sfri_2768 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, winged helix family protein YP_751447.1 3328540 R 318167 CDS YP_751448.1 114563934 4279675 complement(3329800..3330744) 1 NC_008345.1 PFAM: porin, Gram-negative type; KEGG: son:SO1557 outer membrane porin, putative; porin 3330744 4279675 Sfri_2769 Shewanella frigidimarina NCIMB 400 porin YP_751448.1 3329800 R 318167 CDS YP_751449.1 114563935 4279676 3331061..3331972 1 NC_008345.1 Required for efficient pilin antigenic variation; recombination associated protein 3331972 rdgC 4279676 rdgC Shewanella frigidimarina NCIMB 400 recombination associated protein YP_751449.1 3331061 D 318167 CDS YP_751450.1 114563936 4279677 3331990..3332547 1 NC_008345.1 PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: ilo:IL2586 glutathione S-transferase related protein; glutathione S-transferase domain-containing protein 3332547 4279677 Sfri_2771 Shewanella frigidimarina NCIMB 400 glutathione S-transferase domain-containing protein YP_751450.1 3331990 D 318167 CDS YP_751451.1 114563937 4279678 complement(3332638..3334464) 1 NC_008345.1 PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: pha:PSHAb0471 hypothetical protein; peptidase M61 domain-containing protein 3334464 4279678 Sfri_2772 Shewanella frigidimarina NCIMB 400 peptidase M61 domain-containing protein YP_751451.1 3332638 R 318167 CDS YP_751452.1 114563938 4279679 3334666..3336822 1 NC_008345.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO1552 TPR domain protein; TPR repeat-containing protein 3336822 4279679 Sfri_2773 Shewanella frigidimarina NCIMB 400 TPR repeat-containing protein YP_751452.1 3334666 D 318167 CDS YP_751453.1 114563939 4279680 3336988..3338580 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1551 GGDEF domain protein; diguanylate cyclase 3338580 4279680 Sfri_2774 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_751453.1 3336988 D 318167 CDS YP_751454.1 114563940 4279681 3338643..3340007 1 NC_008345.1 PFAM: conserved hypothetical protein 730; KEGG: son:SO1550 hypothetical protein; hypothetical protein 3340007 4279681 Sfri_2775 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751454.1 3338643 D 318167 CDS YP_751455.1 114563941 4279682 3340000..3340767 1 NC_008345.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3340767 xni 4279682 xni Shewanella frigidimarina NCIMB 400 exonuclease IX YP_751455.1 3340000 D 318167 CDS YP_751456.1 114563942 4279683 3341015..3341413 1 NC_008345.1 KEGG: son:SO1548 hypothetical protein; hypothetical protein 3341413 4279683 Sfri_2777 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751456.1 3341015 D 318167 CDS YP_751457.1 114563943 4279684 complement(3341509..3344376) 1 NC_008345.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1539 hypothetical protein; peptidase S9 prolyl oligopeptidase 3344376 4279684 Sfri_2778 Shewanella frigidimarina NCIMB 400 peptidase S9 prolyl oligopeptidase YP_751457.1 3341509 R 318167 CDS YP_751458.1 114563944 4279685 3344816..3345826 1 NC_008345.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 3345826 4279685 Sfri_2779 Shewanella frigidimarina NCIMB 400 isocitrate dehydrogenase YP_751458.1 3344816 D 318167 CDS YP_751459.1 114563945 4279686 complement(3345929..3347017) 1 NC_008345.1 KEGG: son:SO1536 hypothetical protein; putative RNA 2'-O-ribose methyltransferase 3347017 4279686 Sfri_2780 Shewanella frigidimarina NCIMB 400 putative RNA 2'-O-ribose methyltransferase YP_751459.1 3345929 R 318167 CDS YP_751460.1 114563946 4279687 complement(3347114..3347494) 1 NC_008345.1 PFAM: protein of unknown function DUF423; KEGG: son:SO1535 hypothetical protein; hypothetical protein 3347494 4279687 Sfri_2781 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751460.1 3347114 R 318167 CDS YP_751461.1 114563947 4279688 complement(3347670..3348380) 1 NC_008345.1 KEGG: son:SO1534 hypothetical protein; hypothetical protein 3348380 4279688 Sfri_2782 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751461.1 3347670 R 318167 CDS YP_751462.1 114563948 4279689 complement(3348361..3349272) 1 NC_008345.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3349272 4279689 Sfri_2783 Shewanella frigidimarina NCIMB 400 DNA-binding transcriptional activator GcvA YP_751462.1 3348361 R 318167 CDS YP_751463.1 114563949 4279690 3349452..3349676 1 NC_008345.1 hypothetical protein 3349676 4279690 Sfri_2784 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751463.1 3349452 D 318167 CDS YP_751464.1 114563950 4279691 complement(3349868..3351322) 1 NC_008345.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 3351322 4279691 Sfri_2785 Shewanella frigidimarina NCIMB 400 thiamine biosynthesis protein ThiI YP_751464.1 3349868 R 318167 CDS YP_751465.1 114563951 4279692 complement(3351685..3352611) 1 NC_008345.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB 3352611 motB 4279692 motB Shewanella frigidimarina NCIMB 400 flagellar motor protein MotB YP_751465.1 3351685 R 318167 CDS YP_751466.1 114563952 4279693 complement(3352615..3353382) 1 NC_008345.1 Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA 3353382 4279693 Sfri_2787 Shewanella frigidimarina NCIMB 400 flagellar motor protein PomA YP_751466.1 3352615 R 318167 CDS YP_751467.1 114563953 4279694 3353722..3353958 1 NC_008345.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: vvy:VV0870 exonuclease VII small subunit; exodeoxyribonuclease VII small subunit 3353958 4279694 Sfri_2788 Shewanella frigidimarina NCIMB 400 exodeoxyribonuclease VII small subunit YP_751467.1 3353722 D 318167 CDS YP_751468.1 114563954 4279695 3353998..3354879 1 NC_008345.1 PFAM: Polyprenyl synthetase; KEGG: son:SO1526 geranyltranstransferase; polyprenyl synthetase 3354879 4279695 Sfri_2789 Shewanella frigidimarina NCIMB 400 polyprenyl synthetase YP_751468.1 3353998 D 318167 CDS YP_751469.1 114563955 4279696 3354902..3356767 1 NC_008345.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3356767 4279696 Sfri_2790 Shewanella frigidimarina NCIMB 400 1-deoxy-D-xylulose-5-phosphate synthase YP_751469.1 3354902 D 318167 CDS YP_751470.1 114563956 4279697 complement(3356950..3357555) 1 NC_008345.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 3357555 4279697 Sfri_2791 Shewanella frigidimarina NCIMB 400 heat shock protein GrpE YP_751470.1 3356950 R 318167 CDS YP_751471.1 114563957 4279698 3357668..3358597 1 NC_008345.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3358597 ppnK 4279698 ppnK Shewanella frigidimarina NCIMB 400 inorganic polyphosphate/ATP-NAD kinase YP_751471.1 3357668 D 318167 CDS YP_751472.1 114563958 4279699 3358928..3360580 1 NC_008345.1 PFAM: L-lactate permease; KEGG: son:SO1522 L-lactate permease, putative; L-lactate permease 3360580 4279699 Sfri_2793 Shewanella frigidimarina NCIMB 400 L-lactate permease YP_751472.1 3358928 D 318167 CDS YP_751473.1 114563959 4279700 3360672..3363476 1 NC_008345.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: son:SO1521 iron-sulfur cluster-binding protein; FAD linked oxidase domain-containing protein 3363476 4279700 Sfri_2794 Shewanella frigidimarina NCIMB 400 FAD linked oxidase domain-containing protein YP_751473.1 3360672 D 318167 CDS YP_751474.1 114563960 4279701 complement(3363660..3364748) 1 NC_008345.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: son:SO1502 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein, P47K 3364748 4279701 Sfri_2795 Shewanella frigidimarina NCIMB 400 cobalamin synthesis protein, P47K YP_751474.1 3363660 R 318167 CDS YP_751475.1 114563961 4279702 complement(3364745..3366016) 1 NC_008345.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1501 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 3366016 4279702 Sfri_2796 Shewanella frigidimarina NCIMB 400 DEAD/DEAH box helicase YP_751475.1 3364745 R 318167 CDS YP_751476.1 114563962 4279703 complement(3366158..3369220) 1 NC_008345.1 KEGG: son:SO1500 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type, transmembrane region; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3369220 4279703 Sfri_2797 Shewanella frigidimarina NCIMB 400 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_751476.1 3366158 R 318167 CDS YP_751477.1 114563963 4279704 3369624..3370772 1 NC_008345.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO1490 alcohol dehydrogenase II; iron-containing alcohol dehydrogenase 3370772 4279704 Sfri_2798 Shewanella frigidimarina NCIMB 400 iron-containing alcohol dehydrogenase YP_751477.1 3369624 D 318167 CDS YP_751478.1 114563964 4279705 3371041..3371406 1 NC_008345.1 KEGG: son:SO1489 hypothetical protein; hypothetical protein 3371406 4279705 Sfri_2799 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751478.1 3371041 D 318167 CDS YP_751479.1 114563965 4279706 complement(3371547..3371915) 1 NC_008345.1 PFAM: thioesterase superfamily protein; KEGG: son:SO1486 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 3371915 4279706 Sfri_2800 Shewanella frigidimarina NCIMB 400 thioesterase superfamily protein YP_751479.1 3371547 R 318167 CDS YP_751480.1 114563966 4279707 complement(3372152..3373162) 1 NC_008345.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO3338 L-allo-threonine aldolase; threonine aldolase 3373162 4279707 Sfri_2801 Shewanella frigidimarina NCIMB 400 threonine aldolase YP_751480.1 3372152 R 318167 CDS YP_751481.1 114563967 4279708 complement(3373209..3373802) 1 NC_008345.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO3341 antioxidant, AhpC/TSA family; redoxin domain-containing protein 3373802 4279708 Sfri_2802 Shewanella frigidimarina NCIMB 400 redoxin domain-containing protein YP_751481.1 3373209 R 318167 CDS YP_751482.1 114563968 4279709 complement(3373869..3374702) 1 NC_008345.1 PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO3340 hypothetical small-conductance mechanosensitive channel; MscS mechanosensitive ion channel 3374702 4279709 Sfri_2803 Shewanella frigidimarina NCIMB 400 MscS mechanosensitive ion channel YP_751482.1 3373869 R 318167 CDS YP_751483.1 114563969 4279710 complement(3374728..3375375) 1 NC_008345.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO3339 OmpA family protein; OmpA/MotB domain-containing protein 3375375 4279710 Sfri_2804 Shewanella frigidimarina NCIMB 400 OmpA/MotB domain-containing protein YP_751483.1 3374728 R 318167 CDS YP_751484.1 114563970 4279711 complement(3377799..3378920) 1 NC_008345.1 PFAM: response regulator receiver; KEGG: son:SO3196 response regulator; response regulator receiver protein 3378920 4279711 Sfri_2806 Shewanella frigidimarina NCIMB 400 response regulator receiver protein YP_751484.1 3377799 R 318167 CDS YP_751485.1 114563971 4279712 complement(3378967..3379746) 1 NC_008345.1 PFAM: VacJ family lipoprotein; KEGG: son:SO3197 vacJ lipoprotein, putative; VacJ family lipoprotein 3379746 4279712 Sfri_2807 Shewanella frigidimarina NCIMB 400 VacJ family lipoprotein YP_751485.1 3378967 R 318167 CDS YP_751486.1 114563972 4279713 3380090..3382219 1 NC_008345.1 KEGG: son:SO3198 hypothetical protein; hypothetical protein 3382219 4279713 Sfri_2808 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751486.1 3380090 D 318167 CDS YP_751487.1 114563973 4279714 3382228..3382542 1 NC_008345.1 KEGG: son:SO3199 FlhB domain protein; FlhB domain-containing protein 3382542 4279714 Sfri_2809 Shewanella frigidimarina NCIMB 400 FlhB domain-containing protein YP_751487.1 3382228 D 318167 CDS YP_751488.1 114563974 4279715 complement(3382585..3382926) 1 NC_008345.1 hypothetical protein 3382926 4279715 Sfri_2810 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751488.1 3382585 R 318167 CDS YP_751489.1 114563975 4279716 3383712..3384680 1 NC_008345.1 KEGG: son:SO2736 hypothetical protein; hypothetical protein 3384680 4279716 Sfri_2811 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751489.1 3383712 D 318167 CDS YP_751490.1 114563976 4279717 complement(3384823..3385770) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: cvi:CV3504 probable two-component response regulator; diguanylate cyclase 3385770 4279717 Sfri_2812 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_751490.1 3384823 R 318167 CDS YP_751491.1 114563977 4279718 complement(3385774..3390672) 1 NC_008345.1 KEGG: cvi:CV1621 probable sensor/response regulatory hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 3390672 4279718 Sfri_2813 Shewanella frigidimarina NCIMB 400 multi-sensor hybrid histidine kinase YP_751491.1 3385774 R 318167 CDS YP_751492.1 114563978 4279719 complement(3391219..3392361) 1 NC_008345.1 KEGG: ava:Ava_4197 hypothetical protein; hypothetical protein 3392361 4279719 Sfri_2814 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751492.1 3391219 R 318167 CDS YP_751493.1 114563979 4279720 complement(3392373..3393017) 1 NC_008345.1 PFAM: Redoxin domain protein; KEGG: pha:PSHAa1831 AhpC-TSA; redoxin domain-containing protein 3393017 4279720 Sfri_2815 Shewanella frigidimarina NCIMB 400 redoxin domain-containing protein YP_751493.1 3392373 R 318167 CDS YP_751494.1 114563980 4279721 3393145..3393711 1 NC_008345.1 PFAM: regulatory protein, TetR; KEGG: rba:RB4571 hypothetical protein; transcriptional regulator, TetR family protein 3393711 4279721 Sfri_2816 Shewanella frigidimarina NCIMB 400 transcriptional regulator, TetR family protein YP_751494.1 3393145 D 318167 CDS YP_751495.1 114563981 4279722 complement(3394154..3396622) 1 NC_008345.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: pha:PSHAa0132 hydrolase; peptidase S9 prolyl oligopeptidase 3396622 4279722 Sfri_2817 Shewanella frigidimarina NCIMB 400 peptidase S9 prolyl oligopeptidase YP_751495.1 3394154 R 318167 CDS YP_751496.1 114563982 4279723 complement(3396884..3398959) 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: plt:Plut_1539 receptor, putative; TonB-dependent receptor, plug 3398959 4279723 Sfri_2818 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor, plug YP_751496.1 3396884 R 318167 CDS YP_751497.1 114563983 4279724 3399036..3399425 1 NC_008345.1 PFAM: regulatory protein, MerR; KEGG: cps:CPS_1955 transcriptional regulator, MerR family; transcriptional regulator, MerR family protein 3399425 4279724 Sfri_2819 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MerR family protein YP_751497.1 3399036 D 318167 CDS YP_751498.1 114563984 4279725 3400051..3401616 1 NC_008345.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pha:PSHAa0443 RNAse; beta-lactamase domain-containing protein 3401616 4279725 Sfri_2820 Shewanella frigidimarina NCIMB 400 beta-lactamase domain-containing protein YP_751498.1 3400051 D 318167 CDS YP_751499.1 114563985 4279726 3401746..3402129 1 NC_008345.1 crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein 3402129 4279726 Sfri_2821 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751499.1 3401746 D 318167 CDS YP_751500.1 114563986 4279727 complement(3402428..3403780) 1 NC_008345.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: msu:MS0967 CpsG protein; phosphoglucosamine mutase 3403780 4279727 Sfri_2822 Shewanella frigidimarina NCIMB 400 phosphoglucosamine mutase YP_751500.1 3402428 R 318167 CDS YP_751501.1 114563987 4279728 complement(3404159..3405046) 1 NC_008345.1 KEGG: ppr:PBPRA2674 putative UTP-glucose-1-phosphateuridylyltransferase, galU; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 3405046 4279728 Sfri_2823 Shewanella frigidimarina NCIMB 400 UTP-glucose-1-phosphate uridylyltransferase YP_751501.1 3404159 R 318167 CDS YP_751502.1 114563988 4279729 complement(3405113..3406186) 1 NC_008345.1 TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: cps:CPS_2091 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 3406186 4279729 Sfri_2824 Shewanella frigidimarina NCIMB 400 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_751502.1 3405113 R 318167 CDS YP_751503.1 114563989 4279730 complement(3406320..3407399) 1 NC_008345.1 TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: ppr:PBPRA2673 hypothetical undecaprenylphosphateN-acetylglucosamine 1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 3407399 4279730 Sfri_2825 Shewanella frigidimarina NCIMB 400 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_751503.1 3406320 R 318167 CDS YP_751504.1 114563990 4279731 complement(3407915..3408970) 1 NC_008345.1 PFAM: glycosyl transferase, group 1; KEGG: sbo:SBO_0859 putative glycosyl transferase; group 1 glycosyl transferase 3408970 4279731 Sfri_2826 Shewanella frigidimarina NCIMB 400 group 1 glycosyl transferase YP_751504.1 3407915 R 318167 CDS YP_751505.1 114563991 4279732 complement(3408967..3409515) 1 NC_008345.1 KEGG: vvy:VV0303 dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 3409515 4279732 Sfri_2827 Shewanella frigidimarina NCIMB 400 dTDP-4-dehydrorhamnose 3,5-epimerase YP_751505.1 3408967 R 318167 CDS YP_751506.1 114563992 4279733 complement(3409516..3410391) 1 NC_008345.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: vvy:VV0302 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 3410391 4279733 Sfri_2828 Shewanella frigidimarina NCIMB 400 dTDP-4-dehydrorhamnose reductase YP_751506.1 3409516 R 318167 CDS YP_751507.1 114563993 4279734 complement(3410394..3411263) 1 NC_008345.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: vfi:VF0167 Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 3411263 4279734 Sfri_2829 Shewanella frigidimarina NCIMB 400 glucose-1-phosphate thymidylyltransferase YP_751507.1 3410394 R 318167 CDS YP_751508.1 114563994 4279735 complement(3411263..3412366) 1 NC_008345.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: vfi:VF0166 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 3412366 4279735 Sfri_2830 Shewanella frigidimarina NCIMB 400 dTDP-glucose 4,6-dehydratase YP_751508.1 3411263 R 318167 CDS YP_751509.1 114563995 4279736 complement(3412382..3413197) 1 NC_008345.1 KEGG: syn:slr2125 hypothetical protein; hypothetical protein 3413197 4279736 Sfri_2831 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751509.1 3412382 R 318167 CDS YP_751510.1 114563996 4279737 complement(3413194..3414057) 1 NC_008345.1 PFAM: glycosyl transferase, family 2; KEGG: cac:CAC2174 glycosyltransferase; glycosyl transferase family protein 3414057 4279737 Sfri_2832 Shewanella frigidimarina NCIMB 400 glycosyl transferase family protein YP_751510.1 3413194 R 318167 CDS YP_751511.1 114563997 4279738 complement(3414044..3415219) 1 NC_008345.1 KEGG: aci:ACIAD3337 hypothetical protein; hypothetical protein 3415219 4279738 Sfri_2833 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751511.1 3414044 R 318167 CDS YP_751512.1 114563998 4279739 complement(3415253..3416470) 1 NC_008345.1 PFAM: polysaccharide biosynthesis protein; KEGG: bba:Bd1688 putative polysaccharide biosynthesis protein CpsL; polysaccharide biosynthesis protein 3416470 4279739 Sfri_2834 Shewanella frigidimarina NCIMB 400 polysaccharide biosynthesis protein YP_751512.1 3415253 R 318167 CDS YP_751513.1 114563999 4279740 complement(3416550..3418322) 1 NC_008345.1 TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; KEGG: nmu:Nmul_A2515 FkbH domain; HAD family phosphatase 3418322 4279740 Sfri_2835 Shewanella frigidimarina NCIMB 400 HAD family phosphatase YP_751513.1 3416550 R 318167 CDS YP_751514.1 114564000 4279741 complement(3418323..3419084) 1 NC_008345.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gvi:glr3777 probable oxidoreductase; short-chain dehydrogenase/reductase SDR 3419084 4279741 Sfri_2836 Shewanella frigidimarina NCIMB 400 short-chain dehydrogenase/reductase SDR YP_751514.1 3418323 R 318167 CDS YP_751515.1 114564001 4279742 complement(3419098..3420045) 1 NC_008345.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: gvi:glr3776 phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 3420045 4279742 Sfri_2837 Shewanella frigidimarina NCIMB 400 D-isomer specific 2-hydroxyacid dehydrogenase YP_751515.1 3419098 R 318167 CDS YP_751516.1 114564002 4279743 complement(3420049..3420747) 1 NC_008345.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: gvi:glr3775 hypothetical protein; acylneuraminate cytidylyltransferase 3420747 4279743 Sfri_2838 Shewanella frigidimarina NCIMB 400 acylneuraminate cytidylyltransferase YP_751516.1 3420049 R 318167 CDS YP_751517.1 114564003 4279744 complement(3420704..3421648) 1 NC_008345.1 PFAM: glycosyl transferase, family 2; KEGG: gvi:glr3774 hypothetical protein; glycosyl transferase family protein 3421648 4279744 Sfri_2839 Shewanella frigidimarina NCIMB 400 glycosyl transferase family protein YP_751517.1 3420704 R 318167 CDS YP_751518.1 114564004 4279745 complement(3421654..3422523) 1 NC_008345.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ret:RHE_CH00852 probable gluconolactonase protein (calcium-binding regucalcin-like); SMP-30/gluconolaconase/LRE domain-containing protein 3422523 4279745 Sfri_2840 Shewanella frigidimarina NCIMB 400 SMP-30/gluconolaconase/LRE domain-containing protein YP_751518.1 3421654 R 318167 CDS YP_751519.1 114564005 4279746 complement(3422883..3423863) 1 NC_008345.1 PFAM: lipopolysaccharide biosynthesis; KEGG: son:SO3191 chain length determinant protein; lipopolysaccharide biosynthesis protein 3423863 4279746 Sfri_2841 Shewanella frigidimarina NCIMB 400 lipopolysaccharide biosynthesis protein YP_751519.1 3422883 R 318167 CDS YP_751520.1 114564006 4279747 complement(3424047..3424424) 1 NC_008345.1 crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein 3424424 4279747 Sfri_2842 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751520.1 3424047 R 318167 CDS YP_751521.1 114564007 4279748 complement(3424583..3427315) 1 NC_008345.1 PFAM: polysaccharide export protein; KEGG: son:SO3193 polysaccharide biosynthesis protein; polysaccharide export protein 3427315 4279748 Sfri_2843 Shewanella frigidimarina NCIMB 400 polysaccharide export protein YP_751521.1 3424583 R 318167 CDS YP_751522.1 114564008 4279749 complement(3427855..3428367) 1 NC_008345.1 KEGG: son:SO3194 transcriptional activator rfaH, putative; TIGRFAM: transcriptional activator RfaH; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; NusG antitermination factor 3428367 4279749 Sfri_2844 Shewanella frigidimarina NCIMB 400 NusG antitermination factor YP_751522.1 3427855 R 318167 CDS YP_751523.1 114564009 4279750 complement(3428958..3429515) 1 NC_008345.1 KEGG: son:SO3343 hypothetical protein; hypothetical protein 3429515 4279750 Sfri_2845 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751523.1 3428958 R 318167 CDS YP_751524.1 114564010 4279751 complement(3429834..3431579) 1 NC_008345.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: cps:CPS_0506 putative sucrose phosphorylase; alpha amylase 3431579 4279751 Sfri_2846 Shewanella frigidimarina NCIMB 400 alpha amylase YP_751524.1 3429834 R 318167 CDS YP_751525.1 114564011 4279752 complement(3431606..3432826) 1 NC_008345.1 KEGG: cps:CPS_0507 hypothetical protein; hypothetical protein 3432826 4279752 Sfri_2847 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751525.1 3431606 R 318167 CDS YP_751526.1 114564012 4279753 complement(3432828..3433688) 1 NC_008345.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 3433688 4279753 Sfri_2848 Shewanella frigidimarina NCIMB 400 mannosyl-3-phosphoglycerate phosphatase YP_751526.1 3432828 R 318167 CDS YP_751527.1 114564013 4279754 complement(3434949..3435368) 1 NC_008345.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3435368 4279754 Sfri_2849 Shewanella frigidimarina NCIMB 400 Holliday junction resolvase-like protein YP_751527.1 3434949 R 318167 CDS YP_751528.1 114564014 4279755 complement(3435548..3436108) 1 NC_008345.1 PFAM: protein of unknown function DUF179; KEGG: son:SO3346 putative transcriptional regulator; hypothetical protein 3436108 4279755 Sfri_2850 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751528.1 3435548 R 318167 CDS YP_751529.1 114564015 4279756 complement(3436142..3436471) 1 NC_008345.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 3436471 4279756 Sfri_2851 Shewanella frigidimarina NCIMB 400 translation initiation factor Sui1 YP_751529.1 3436142 R 318167 CDS YP_751530.1 114564016 4279757 complement(3436726..3437739) 1 NC_008345.1 PFAM: ferrochelatase; KEGG: son:SO3348 ferrochelatase; ferrochelatase 3437739 4279757 Sfri_2852 Shewanella frigidimarina NCIMB 400 ferrochelatase YP_751530.1 3436726 R 318167 CDS YP_751531.1 114564017 4279758 complement(3437992..3438525) 1 NC_008345.1 PFAM: glutathione peroxidase; KEGG: son:SO3349 glutathione peroxidase, putative; glutathione peroxidase 3438525 4279758 Sfri_2853 Shewanella frigidimarina NCIMB 400 glutathione peroxidase YP_751531.1 3437992 R 318167 CDS YP_751532.1 114564018 4279759 complement(3438654..3439757) 1 NC_008345.1 KEGG: cps:CPS_4910 hypothetical protein; hypothetical protein 3439757 4279759 Sfri_2854 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751532.1 3438654 R 318167 CDS YP_751533.1 114564019 4279760 complement(3439996..3440739) 1 NC_008345.1 PFAM: type II secretion system protein E; KEGG: son:SO3350 twitching motility protein PilU; type II secretion system protein E 3440739 4279760 Sfri_2855 Shewanella frigidimarina NCIMB 400 type II secretion system protein E YP_751533.1 3439996 R 318167 CDS YP_751534.1 114564020 4279761 3440781..3441047 1 NC_008345.1 PFAM: transposase IS3/IS911 family protein; KEGG: son:SO4268 ISSod2, transposase OrfA; transposase IS3/IS911 family protein 3441047 4279761 Sfri_2856 Shewanella frigidimarina NCIMB 400 transposase IS3/IS911 family protein YP_751534.1 3440781 D 318167 CDS YP_751535.1 114564021 4279762 3441041..3441868 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: xcv:XCV3412 ISxac2 transposase; integrase catalytic subunit 3441868 4279762 Sfri_2857 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_751535.1 3441041 D 318167 CDS YP_751536.1 114564022 4279763 complement(3441857..3442312) 1 NC_008345.1 KEGG: son:SO3350 twitching motility protein PilU; twitching motility protein PilU 3442312 4279763 Sfri_2858 Shewanella frigidimarina NCIMB 400 twitching motility protein PilU YP_751536.1 3441857 R 318167 CDS YP_751537.1 114564023 4279764 complement(3442325..3443362) 1 NC_008345.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: son:SO3351 twitching motility protein PilT; twitching motility protein 3443362 4279764 Sfri_2859 Shewanella frigidimarina NCIMB 400 twitching motility protein YP_751537.1 3442325 R 318167 CDS YP_751538.1 114564024 4279765 3443390..3444076 1 NC_008345.1 TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase domain protein; KEGG: son:SO3352 conserved hypothetical protein TIGR00044; hypothetical protein 3444076 4279765 Sfri_2860 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751538.1 3443390 D 318167 CDS YP_751539.1 114564025 4279766 3444380..3445198 1 NC_008345.1 KEGG: son:SO3354 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 3445198 4279766 Sfri_2861 Shewanella frigidimarina NCIMB 400 pyrroline-5-carboxylate reductase YP_751539.1 3444380 D 318167 CDS YP_751540.1 114564026 4279767 3445434..3445982 1 NC_008345.1 PFAM: protein of unknown function YGGT; KEGG: son:SO3355 hypothetical protein; hypothetical protein 3445982 4279767 Sfri_2862 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751540.1 3445434 D 318167 CDS YP_751541.1 114564027 4279768 3446003..3446317 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF167; KEGG: son:SO3356 hypothetical protein; hypothetical protein 3446317 4279768 Sfri_2863 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751541.1 3446003 D 318167 CDS YP_751542.1 114564028 4279769 3446353..3446814 1 NC_008345.1 KEGG: son:SO3357 hypothetical protein; hypothetical protein 3446814 4279769 Sfri_2864 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751542.1 3446353 D 318167 CDS YP_751543.1 114564029 4279770 3447083..3447757 1 NC_008345.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 3447757 4279770 Sfri_2865 Shewanella frigidimarina NCIMB 400 putative deoxyribonucleotide triphosphate pyrophosphatase YP_751543.1 3447083 D 318167 CDS YP_751544.1 114564030 4279771 3447758..3448897 1 NC_008345.1 KEGG: son:SO3359 oxygen-independent coproporphyrinogen III oxidase, putative; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase 3448897 4279771 Sfri_2866 Shewanella frigidimarina NCIMB 400 putative oxygen-independent coproporphyrinogen III oxidase YP_751544.1 3447758 D 318167 CDS YP_751545.1 114564031 4279772 3449102..3450958 1 NC_008345.1 PFAM: protein of unknown function DUF885; KEGG: son:SO3361 hypothetical protein; hypothetical protein 3450958 4279772 Sfri_2867 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751545.1 3449102 D 318167 CDS YP_751546.1 114564032 4279773 complement(3451414..3452355) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3363 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 3452355 4279773 Sfri_2868 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_751546.1 3451414 R 318167 CDS YP_751547.1 114564033 4279774 complement(3452766..3453578) 1 NC_008345.1 KEGG: son:SO3364 hypothetical protein; hypothetical protein 3453578 4279774 Sfri_2869 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751547.1 3452766 R 318167 CDS YP_751548.1 114564034 4279775 complement(3453806..3454720) 1 NC_008345.1 catalyzes the formation of glutamate from glutamine; glutaminase 3454720 4279775 Sfri_2870 Shewanella frigidimarina NCIMB 400 glutaminase YP_751548.1 3453806 R 318167 CDS YP_751549.1 114564035 4279776 complement(3454727..3455053) 1 NC_008345.1 PFAM: protein of unknown function DUF469; KEGG: son:SO3366 hypothetical protein; hypothetical protein 3455053 4279776 Sfri_2871 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751549.1 3454727 R 318167 CDS YP_751550.1 114564036 4279777 complement(3455089..3455805) 1 NC_008345.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 3455805 trmB 4279777 trmB Shewanella frigidimarina NCIMB 400 tRNA (guanine-N(7)-)-methyltransferase YP_751550.1 3455089 R 318167 CDS YP_751551.1 114564037 4279778 3456055..3457128 1 NC_008345.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; KEGG: son:SO3368 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase 3457128 4279778 Sfri_2873 Shewanella frigidimarina NCIMB 400 A/G-specific adenine glycosylase YP_751551.1 3456055 D 318167 CDS YP_751552.1 114564038 4279779 3457163..3457441 1 NC_008345.1 PFAM: Fe(II) trafficking protein YggX; KEGG: son:SO3369 hypothetical protein; hypothetical protein 3457441 4279779 Sfri_2874 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751552.1 3457163 D 318167 CDS YP_751553.1 114564039 4279780 complement(3457532..3458107) 1 NC_008345.1 PFAM: YceI family protein; KEGG: son:SO3370 hypothetical protein; hypothetical protein 3458107 4279780 Sfri_2875 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751553.1 3457532 R 318167 CDS YP_751554.1 114564040 4279781 complement(3458211..3458768) 1 NC_008345.1 PFAM: cytochrome B561; KEGG: son:SO3371 hypothetical cytochrome B561; cytochrome B561 3458768 4279781 Sfri_2876 Shewanella frigidimarina NCIMB 400 cytochrome B561 YP_751554.1 3458211 R 318167 CDS YP_751555.1 114564041 4279782 complement(3460049..3460750) 1 NC_008345.1 PFAM: SapC family protein; KEGG: pha:PSHAa1142 hypothetical protein; SapC family protein 3460750 4279782 Sfri_2877 Shewanella frigidimarina NCIMB 400 SapC family protein YP_751555.1 3460049 R 318167 CDS YP_751556.1 114564042 4279783 complement(3460991..3462277) 1 NC_008345.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO3517 NADH dehydrogenase; NADH dehydrogenase 3462277 4279783 Sfri_2878 Shewanella frigidimarina NCIMB 400 NADH dehydrogenase YP_751556.1 3460991 R 318167 CDS YP_751557.1 114564043 4279784 complement(3462356..3462694) 1 NC_008345.1 PFAM: nitrogen regulatory protein P-II; KEGG: son:SO3519 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II 3462694 4279784 Sfri_2879 Shewanella frigidimarina NCIMB 400 nitrogen regulatory protein P-II YP_751557.1 3462356 R 318167 CDS YP_751558.1 114564044 4279785 3463119..3463640 1 NC_008345.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO3520 type IV pilus biogenesis protein, putative; prepilin-type cleavage/methylation-like protein 3463640 4279785 Sfri_2880 Shewanella frigidimarina NCIMB 400 prepilin-type cleavage/methylation-like protein YP_751558.1 3463119 D 318167 CDS YP_751559.1 114564045 4279786 3464139..3464651 1 NC_008345.1 PFAM: methylation site containing protein; KEGG: son:SO3521 type IV pilus biogenesis protein, putative; methylation site containing protein 3464651 4279786 Sfri_2881 Shewanella frigidimarina NCIMB 400 methylation site containing protein YP_751559.1 3464139 D 318167 CDS YP_751560.1 114564046 4279787 complement(3464671..3465087) 1 NC_008345.1 PFAM: methylation site containing protein; KEGG: son:SO3524 type IV pilus biogenesis protein PilE; methylation site containing protein 3465087 4279787 Sfri_2882 Shewanella frigidimarina NCIMB 400 methylation site containing protein YP_751560.1 3464671 R 318167 CDS YP_751561.1 114564047 4279788 complement(3465090..3468704) 1 NC_008345.1 KEGG: son:SO3525 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein, putative 3468704 4279788 Sfri_2883 Shewanella frigidimarina NCIMB 400 type IV pilin biogenesis protein, putative YP_751561.1 3465090 R 318167 CDS YP_751562.1 114564048 4279789 complement(3468706..3469158) 1 NC_008345.1 KEGG: son:SO3526 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX 3469158 4279789 Sfri_2884 Shewanella frigidimarina NCIMB 400 type IV pilus assembly protein PilX YP_751562.1 3468706 R 318167 CDS YP_751563.1 114564049 4279790 complement(3469192..3470214) 1 NC_008345.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO3527 type IV pilus assembly protein PilW; prepilin-type cleavage/methylation-like protein 3470214 4279790 Sfri_2885 Shewanella frigidimarina NCIMB 400 prepilin-type cleavage/methylation-like protein YP_751563.1 3469192 R 318167 CDS YP_751564.1 114564050 4279791 complement(3470214..3470762) 1 NC_008345.1 TIGRFAM: type IV pilus modification protein PilV; PFAM: methylation site containing protein; KEGG: son:SO3528 type IV pilus assembly protein PilV; type IV pilus modification protein PilV 3470762 4279791 Sfri_2886 Shewanella frigidimarina NCIMB 400 type IV pilus modification protein PilV YP_751564.1 3470214 R 318167 CDS YP_751565.1 114564051 4279792 complement(3471047..3472006) 1 NC_008345.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3472006 ispH 4279792 ispH Shewanella frigidimarina NCIMB 400 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_751565.1 3471047 R 318167 CDS YP_751566.1 114564052 4279793 complement(3472019..3472462) 1 NC_008345.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3530 peptidyl-prolyl cis-trans isomerase FkbP; peptidylprolyl isomerase, FKBP-type 3472462 4279793 Sfri_2888 Shewanella frigidimarina NCIMB 400 peptidylprolyl isomerase, FKBP-type YP_751566.1 3472019 R 318167 CDS YP_751567.1 114564053 4279794 complement(3472465..3472977) 1 NC_008345.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 3472977 lspA 4279794 lspA Shewanella frigidimarina NCIMB 400 lipoprotein signal peptidase YP_751567.1 3472465 R 318167 CDS YP_751568.1 114564054 4279795 complement(3472991..3475822) 1 NC_008345.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 3475822 ileS 4279795 ileS Shewanella frigidimarina NCIMB 400 isoleucyl-tRNA synthetase YP_751568.1 3472991 R 318167 CDS YP_751569.1 114564055 4279796 complement(3475847..3476782) 1 NC_008345.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: son:SO3533 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF 3476782 4279796 Sfri_2891 Shewanella frigidimarina NCIMB 400 riboflavin biosynthesis protein RibF YP_751569.1 3475847 R 318167 CDS YP_751570.1 114564056 4279797 complement(3476919..3478493) 1 NC_008345.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: son:SO3534 MviN protein; integral membrane protein MviN 3478493 4279797 Sfri_2892 Shewanella frigidimarina NCIMB 400 integral membrane protein MviN YP_751570.1 3476919 R 318167 CDS YP_751571.1 114564057 4279798 3478737..3479003 1 NC_008345.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3479003 rpsT 4279798 rpsT Shewanella frigidimarina NCIMB 400 30S ribosomal protein S20 YP_751571.1 3478737 D 318167 CDS YP_751572.1 114564058 4279799 complement(3479679..3479975) 1 NC_008345.1 PFAM: regulatory protein, ArsR; KEGG: son:SO3538 transcriptional regulator HlyU; ArsR family transcriptional regulator 3479975 4279799 Sfri_2894 Shewanella frigidimarina NCIMB 400 ArsR family transcriptional regulator YP_751572.1 3479679 R 318167 CDS YP_751573.1 114564059 4279800 3480108..3481553 1 NC_008345.1 PFAM: peptidase M20; peptidase M28; KEGG: son:SO3539 peptidase, M28D family; peptidase M28 3481553 4279800 Sfri_2895 Shewanella frigidimarina NCIMB 400 peptidase M28 YP_751573.1 3480108 D 318167 CDS YP_751574.1 114564060 4279801 complement(3481645..3482421) 1 NC_008345.1 PFAM: protein of unknown function DUF328; KEGG: son:SO3540 hypothetical protein; hypothetical protein 3482421 4279801 Sfri_2896 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751574.1 3481645 R 318167 CDS YP_751575.1 114564061 4279802 complement(3482523..3483965) 1 NC_008345.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO3541 sodium:alanine symporter family protein; amino acid carrier protein 3483965 4279802 Sfri_2897 Shewanella frigidimarina NCIMB 400 amino acid carrier protein YP_751575.1 3482523 R 318167 CDS YP_751576.1 114564062 4279803 3484483..3486849 1 NC_008345.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: son:SO3542 putative phosphoketolase; putative phosphoketolase 3486849 4279803 Sfri_2898 Shewanella frigidimarina NCIMB 400 putative phosphoketolase YP_751576.1 3484483 D 318167 CDS YP_751577.1 114564063 4279804 3487233..3488363 1 NC_008345.1 PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: son:SO3545 OmpA family protein; OmpA/MotB domain-containing protein 3488363 4279804 Sfri_2899 Shewanella frigidimarina NCIMB 400 OmpA/MotB domain-containing protein YP_751577.1 3487233 D 318167 CDS YP_751578.1 114564064 4279805 3488660..3489613 1 NC_008345.1 KEGG: son:SO3546 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 3489613 4279805 Sfri_2900 Shewanella frigidimarina NCIMB 400 transaldolase B YP_751578.1 3488660 D 318167 CDS YP_751579.1 114564065 4279806 3489629..3491266 1 NC_008345.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 3491266 pgi 4279806 pgi Shewanella frigidimarina NCIMB 400 glucose-6-phosphate isomerase YP_751579.1 3489629 D 318167 CDS YP_751580.1 114564066 4279807 3491446..3491631 1 NC_008345.1 KEGG: son:SO3548 hypothetical protein; hypothetical protein 3491631 4279807 Sfri_2902 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751580.1 3491446 D 318167 CDS YP_751581.1 114564067 4279808 complement(3491759..3492301) 1 NC_008345.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: son:SO3549 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 3492301 4279808 Sfri_2903 Shewanella frigidimarina NCIMB 400 hemerythrin HHE cation binding domain-containing protein YP_751581.1 3491759 R 318167 CDS YP_751582.1 114564068 4279809 complement(3492486..3493769) 1 NC_008345.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 3493769 4279809 Sfri_2904 Shewanella frigidimarina NCIMB 400 threonine synthase YP_751582.1 3492486 R 318167 CDS YP_751583.1 114564069 4279810 complement(3493816..3494775) 1 NC_008345.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 3494775 4279810 Sfri_2905 Shewanella frigidimarina NCIMB 400 homoserine kinase YP_751583.1 3493816 R 318167 CDS YP_751584.1 114564070 4279811 complement(3494772..3497237) 1 NC_008345.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 3497237 thrA 4279811 thrA Shewanella frigidimarina NCIMB 400 bifunctional aspartokinase I/homoserine dehydrogenase I YP_751584.1 3494772 R 318167 CDS YP_751585.1 114564071 4279812 3497964..3498530 1 NC_008345.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3417 peptidyl-prolyl cis-trans isomerase SlyD; peptidylprolyl isomerase, FKBP-type 3498530 4279812 Sfri_2907 Shewanella frigidimarina NCIMB 400 peptidylprolyl isomerase, FKBP-type YP_751585.1 3497964 D 318167 CDS YP_751586.1 114564072 4279813 3498777..3499154 1 NC_008345.1 KEGG: son:SO3418 hypothetical protein; hypothetical protein 3499154 4279813 Sfri_2908 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751586.1 3498777 D 318167 CDS YP_751587.1 114564073 4279814 complement(3499408..3499686) 1 NC_008345.1 TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: son:SO3419 trp operon repressor; Trp operon repressor 3499686 4279814 Sfri_2909 Shewanella frigidimarina NCIMB 400 Trp operon repressor YP_751587.1 3499408 R 318167 CDS YP_751588.1 114564074 4279815 3500001..3500450 1 NC_008345.1 PFAM: cytochrome c, class II; KEGG: son:SO3420 cytochrome c'; cytochrome c, class II 3500450 4279815 Sfri_2910 Shewanella frigidimarina NCIMB 400 cytochrome c, class II YP_751588.1 3500001 D 318167 CDS YP_751589.1 114564075 4279816 complement(3500585..3501250) 1 NC_008345.1 PFAM: cytochrome B561; KEGG: son:SO3421 b-type cytochrome, putative; cytochrome B561 3501250 4279816 Sfri_2911 Shewanella frigidimarina NCIMB 400 cytochrome B561 YP_751589.1 3500585 R 318167 CDS YP_751590.1 114564076 4279817 3501689..3502042 1 NC_008345.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3422 ribosomal subunit interface protein; sigma 54 modulation protein/ribosomal protein S30EA 3502042 4279817 Sfri_2912 Shewanella frigidimarina NCIMB 400 sigma 54 modulation protein/ribosomal protein S30EA YP_751590.1 3501689 D 318167 CDS YP_751591.1 114564077 4279818 3502346..3504292 1 NC_008345.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: son:SO1367 prephenate dehydratase / chorismate mutase / phospho-2-dehydro-3-deoxyheptonate aldolase; chorismate mutase 3504292 4279818 Sfri_2913 Shewanella frigidimarina NCIMB 400 chorismate mutase YP_751591.1 3502346 D 318167 CDS YP_751592.1 114564078 4279819 complement(3504400..3504744) 1 NC_008345.1 KEGG: son:SO1365 hypothetical protein; hypothetical protein 3504744 4279819 Sfri_2914 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751592.1 3504400 R 318167 CDS YP_751593.1 114564079 4279820 complement(3504875..3506026) 1 NC_008345.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 3506026 tyrA 4279820 tyrA Shewanella frigidimarina NCIMB 400 bifunctional chorismate mutase/prephenate dehydrogenase YP_751593.1 3504875 R 318167 CDS YP_751594.1 114564080 4279821 complement(3506026..3507117) 1 NC_008345.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3507117 4279821 Sfri_2916 Shewanella frigidimarina NCIMB 400 phospho-2-dehydro-3-deoxyheptonate aldolase YP_751594.1 3506026 R 318167 CDS YP_751595.1 114564081 4279822 complement(3507622..3507975) 1 NC_008345.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 3507975 rplS 4279822 rplS Shewanella frigidimarina NCIMB 400 50S ribosomal protein L19 YP_751595.1 3507622 R 318167 CDS YP_751596.1 114564082 4279823 complement(3508009..3508755) 1 NC_008345.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 3508755 trmD 4279823 trmD Shewanella frigidimarina NCIMB 400 tRNA (guanine-N(1)-)-methyltransferase YP_751596.1 3508009 R 318167 CDS YP_751597.1 114564083 4279824 complement(3508771..3509301) 1 NC_008345.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 3509301 rimM 4279824 rimM Shewanella frigidimarina NCIMB 400 16S rRNA-processing protein RimM YP_751597.1 3508771 R 318167 CDS YP_751598.1 114564084 4279825 complement(3509323..3509574) 1 NC_008345.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 3509574 rpsP 4279825 rpsP Shewanella frigidimarina NCIMB 400 30S ribosomal protein S16 YP_751598.1 3509323 R 318167 CDS YP_751599.1 114564085 4279826 complement(3509804..3511177) 1 NC_008345.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 3511177 4279826 Sfri_2921 Shewanella frigidimarina NCIMB 400 signal recognition particle protein YP_751599.1 3509804 R 318167 CDS YP_751600.1 114564086 4279827 3511460..3512248 1 NC_008345.1 PFAM: cytochrome c assembly protein; KEGG: son:SO1355 hypothetical protein; cytochrome c assembly protein 3512248 4279827 Sfri_2922 Shewanella frigidimarina NCIMB 400 cytochrome c assembly protein YP_751600.1 3511460 D 318167 CDS YP_751601.1 114564087 4279828 3512401..3513681 1 NC_008345.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO1354 hemolysin protein, putative; hypothetical protein 3513681 4279828 Sfri_2923 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751601.1 3512401 D 318167 CDS YP_751602.1 114564088 4279829 complement(3513743..3514267) 1 NC_008345.1 PFAM: protein of unknown function DUF962; KEGG: son:SO1353 hypothetical protein; hypothetical protein 3514267 4279829 Sfri_2924 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751602.1 3513743 R 318167 CDS YP_751603.1 114564089 4279830 complement(3514573..3514953) 1 NC_008345.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 3514953 acpS 4279830 acpS Shewanella frigidimarina NCIMB 400 4'-phosphopantetheinyl transferase YP_751603.1 3514573 R 318167 CDS YP_751604.1 114564090 4279831 complement(3514953..3515750) 1 NC_008345.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 3515750 4279831 Sfri_2926 Shewanella frigidimarina NCIMB 400 pyridoxine 5'-phosphate synthase YP_751604.1 3514953 R 318167 CDS YP_751605.1 114564091 4279832 complement(3515800..3516522) 1 NC_008345.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: son:SO1350 DNA repair protein RecO; DNA repair protein RecO 3516522 4279832 Sfri_2927 Shewanella frigidimarina NCIMB 400 DNA repair protein RecO YP_751605.1 3515800 R 318167 CDS YP_751606.1 114564092 4279833 complement(3516559..3517563) 1 NC_008345.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 3517563 era 4279833 era Shewanella frigidimarina NCIMB 400 GTP-binding protein Era YP_751606.1 3516559 R 318167 CDS YP_751607.1 114564093 4279834 complement(3517560..3518240) 1 NC_008345.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 3518240 rnc 4279834 rnc Shewanella frigidimarina NCIMB 400 ribonuclease III YP_751607.1 3517560 R 318167 CDS YP_751608.1 114564094 4279835 complement(3518240..3519154) 1 NC_008345.1 KEGG: son:SO1347 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 3519154 4279835 Sfri_2930 Shewanella frigidimarina NCIMB 400 signal peptidase I YP_751608.1 3518240 R 318167 CDS YP_751609.1 114564095 4279836 complement(3519620..3521410) 1 NC_008345.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 3521410 4279836 Sfri_2931 Shewanella frigidimarina NCIMB 400 GTP-binding protein LepA YP_751609.1 3519620 R 318167 CDS YP_751610.1 114564096 4279837 complement(3521636..3522142) 1 NC_008345.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: son:SO1345 sigma-E factor regulatory protein RseC; sigma E positive regulator RseC/MucC 3522142 4279837 Sfri_2932 Shewanella frigidimarina NCIMB 400 sigma E positive regulator RseC/MucC YP_751610.1 3521636 R 318167 CDS YP_751611.1 114564097 4279838 complement(3522306..3523253) 1 NC_008345.1 PFAM: MucB/RseB family protein; KEGG: son:SO1344 sigma-E factor regulatory protein RseB; sigma E regulatory protein, MucB/RseB 3523253 4279838 Sfri_2933 Shewanella frigidimarina NCIMB 400 sigma E regulatory protein, MucB/RseB YP_751611.1 3522306 R 318167 CDS YP_751612.1 114564098 4279839 complement(3523279..3523896) 1 NC_008345.1 PFAM: Anti sigma-E protein RseA domain protein; KEGG: son:SO1343 sigma-E factor negative regulatory protein; anti sigma-E protein RseA domain-containing protein 3523896 4279839 Sfri_2934 Shewanella frigidimarina NCIMB 400 anti sigma-E protein RseA domain-containing protein YP_751612.1 3523279 R 318167 CDS YP_751613.1 114564099 4279840 complement(3523923..3524501) 1 NC_008345.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 3524501 4279840 Sfri_2935 Shewanella frigidimarina NCIMB 400 RNA polymerase sigma factor RpoE YP_751613.1 3523923 R 318167 CDS YP_751614.1 114564100 4279841 3524736..3526352 1 NC_008345.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 3526352 4279841 Sfri_2936 Shewanella frigidimarina NCIMB 400 L-aspartate oxidase YP_751614.1 3524736 D 318167 CDS YP_751615.1 114564101 4279842 complement(3526383..3526856) 1 NC_008345.1 KEGG: son:SO1340 hypothetical protein; hypothetical protein 3526856 4279842 Sfri_2937 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751615.1 3526383 R 318167 CDS YP_751616.1 114564102 4279843 complement(3526837..3527088) 1 NC_008345.1 PFAM: protein of unknown function DUF339; KEGG: son:SO1339 hypothetical protein; hypothetical protein 3527088 4279843 Sfri_2938 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751616.1 3526837 R 318167 CDS YP_751617.1 114564103 4279844 complement(3527115..3528038) 1 NC_008345.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 3528038 nhaR 4279844 nhaR Shewanella frigidimarina NCIMB 400 transcriptional activator NhaR YP_751617.1 3527115 R 318167 CDS YP_751618.1 114564104 4279845 complement(3528209..3528595) 1 NC_008345.1 KEGG: son:SO1337 hypothetical protein; hypothetical protein 3528595 4279845 Sfri_2940 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751618.1 3528209 R 318167 CDS YP_751619.1 114564105 4279846 complement(3528582..3529766) 1 NC_008345.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 3529766 nhaA 4279846 nhaA Shewanella frigidimarina NCIMB 400 pH-dependent sodium/proton antiporter YP_751619.1 3528582 R 318167 CDS YP_751620.1 114564106 4279847 3529982..3530833 1 NC_008345.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 3530833 thyA 4279847 thyA Shewanella frigidimarina NCIMB 400 thymidylate synthase YP_751620.1 3529982 D 318167 CDS YP_751621.1 114564107 4279848 complement(3530911..3531711) 1 NC_008345.1 PFAM: protein of unknown function DUF81; KEGG: son:SO1333 hypothetical protein; hypothetical protein 3531711 4279848 Sfri_2943 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751621.1 3530911 R 318167 CDS YP_751622.1 114564108 4279849 complement(3531800..3534040) 1 NC_008345.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: son:SO1332 phosphoenolpyruvate-protein phosphotransferase PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP 3534040 4279849 Sfri_2944 Shewanella frigidimarina NCIMB 400 phosphoenolpyruvate-protein phosphotransferase PtsP YP_751622.1 3531800 R 318167 CDS YP_751623.1 114564109 4279850 complement(3534065..3534583) 1 NC_008345.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 3534583 4279850 Sfri_2945 Shewanella frigidimarina NCIMB 400 dinucleoside polyphosphate hydrolase YP_751623.1 3534065 R 318167 CDS YP_751624.1 114564110 4279851 3535347..3536015 1 NC_008345.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3536015 4279851 Sfri_2946 Shewanella frigidimarina NCIMB 400 DNA mismatch repair protein YP_751624.1 3535347 D 318167 CDS YP_751625.1 114564111 4279852 3536536..3537558 1 NC_008345.1 KEGG: son:SO1329 adenylate cyclase-related protein; putative adenylate/guanylate cyclase 3537558 4279852 Sfri_2947 Shewanella frigidimarina NCIMB 400 putative adenylate/guanylate cyclase YP_751625.1 3536536 D 318167 CDS YP_751626.1 114564112 4279853 complement(3537758..3538675) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1328 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 3538675 4279853 Sfri_2948 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_751626.1 3537758 R 318167 CDS YP_751627.1 114564113 4279854 complement(3538881..3539246) 1 NC_008345.1 PFAM: Hpt domain protein; KEGG: son:SO1327 sensor histidine kinase-related protein; Hpt protein 3539246 4279854 Sfri_2949 Shewanella frigidimarina NCIMB 400 Hpt protein YP_751627.1 3538881 R 318167 CDS YP_751628.1 114564114 4279855 complement(3539532..3540500) 1 NC_008345.1 KEGG: son:SO1326 hypothetical protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; putative radical SAM protein 3540500 4279855 Sfri_2950 Shewanella frigidimarina NCIMB 400 putative radical SAM protein YP_751628.1 3539532 R 318167 CDS YP_751629.1 114564115 4279856 3541024..3545472 1 NC_008345.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3545472 gltB 4279856 gltB Shewanella frigidimarina NCIMB 400 glutamate synthase subunit alpha YP_751629.1 3541024 D 318167 CDS YP_751630.1 114564116 4279857 3545478..3546884 1 NC_008345.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3546884 gltD 4279857 gltD Shewanella frigidimarina NCIMB 400 glutamate synthase subunit beta YP_751630.1 3545478 D 318167 CDS YP_751631.1 114564117 4279858 complement(3547074..3547742) 1 NC_008345.1 PFAM: type IV pilus assembly PilZ; KEGG: vfi:VF1838 hypothetical protein; type IV pilus assembly PilZ 3547742 4279858 Sfri_2953 Shewanella frigidimarina NCIMB 400 type IV pilus assembly PilZ YP_751631.1 3547074 R 318167 CDS YP_751632.1 114564118 4279859 3548430..3550388 1 NC_008345.1 PFAM: iron permease FTR1; KEGG: ilo:IL0111 high-affinity Fe2+/Pb2+ permease; iron permease FTR1 3550388 4279859 Sfri_2954 Shewanella frigidimarina NCIMB 400 iron permease FTR1 YP_751632.1 3548430 D 318167 CDS YP_751633.1 114564119 4279860 complement(3550510..3550923) 1 NC_008345.1 KEGG: pha:PSHAb0233 hypothetical protein; hypothetical protein 3550923 4279860 Sfri_2955 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751633.1 3550510 R 318167 CDS YP_751634.1 114564120 4279861 3551164..3553536 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAb0232 putative TonB dependent receptor; TonB-dependent receptor 3553536 4279861 Sfri_2956 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor YP_751634.1 3551164 D 318167 CDS YP_751635.1 114564121 4279862 3553548..3555701 1 NC_008345.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: pha:PSHAb0231 mercuric reductase (Hg(II) reductase); pyridine nucleotide-disulfide oxidoreductase dimerisation region 3555701 4279862 Sfri_2957 Shewanella frigidimarina NCIMB 400 pyridine nucleotide-disulfide oxidoreductase dimerisation region YP_751635.1 3553548 D 318167 CDS YP_751636.1 114564122 4279863 3555863..3556756 1 NC_008345.1 PFAM: protein of unknown function DUF547; KEGG: pha:PSHAb0230 putative secreted protein similar to a protein present in D.psychrophila; hypothetical protein 3556756 4279863 Sfri_2958 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751636.1 3555863 D 318167 CDS YP_751637.1 114564123 4279864 3556872..3558131 1 NC_008345.1 KEGG: pha:PSHAb0229 putative ABC-type transport system, periplasmic component; putative ABC transporter solute-binding protein 3558131 4279864 Sfri_2959 Shewanella frigidimarina NCIMB 400 putative ABC transporter solute-binding protein YP_751637.1 3556872 D 318167 CDS YP_751638.1 114564124 4279865 3558128..3559885 1 NC_008345.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pha:PSHAb0228 putative ABC-type transport system, permease component; binding-protein-dependent transport systems inner membrane component 3559885 4279865 Sfri_2960 Shewanella frigidimarina NCIMB 400 binding-protein-dependent transport systems inner membrane component YP_751638.1 3558128 D 318167 CDS YP_751639.1 114564125 4279866 3559894..3560574 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pha:PSHAb0227 putative ABC transporter ATP-binding; ABC transporter 3560574 4279866 Sfri_2961 Shewanella frigidimarina NCIMB 400 ABC transporter YP_751639.1 3559894 D 318167 CDS YP_751640.1 114564126 4279867 3560608..3561273 1 NC_008345.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pha:PSHAb0226 putative CDP-alcohol phosphatidyltransferase or phosphatidylglycerophosphate synthase; CDP-alcohol phosphatidyltransferase 3561273 4279867 Sfri_2962 Shewanella frigidimarina NCIMB 400 CDP-alcohol phosphatidyltransferase YP_751640.1 3560608 D 318167 CDS YP_751641.1 114564127 4279868 3561270..3562082 1 NC_008345.1 KEGG: par:Psyc_1393 possible sterol desaturase; putative sterol desaturase 3562082 4279868 Sfri_2963 Shewanella frigidimarina NCIMB 400 putative sterol desaturase YP_751641.1 3561270 D 318167 CDS YP_751642.1 114564128 4279869 3562302..3563387 1 NC_008345.1 PFAM: chemotaxis sensory transducer; KEGG: son:SO1144 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3563387 4279869 Sfri_2964 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_751642.1 3562302 D 318167 CDS YP_751643.1 114564129 4279870 3563575..3565839 1 NC_008345.1 PFAM: EAL domain protein; KEGG: ilo:IL1784 disrupted signaling protein (xGGDEF and EAL domains); diguanylate phosphodiesterase 3565839 4279870 Sfri_2965 Shewanella frigidimarina NCIMB 400 diguanylate phosphodiesterase YP_751643.1 3563575 D 318167 CDS YP_751644.1 114564130 4279871 3565984..3566676 1 NC_008345.1 PFAM: purine and other phosphorylases, family 1; KEGG: son:SO1322 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase; adenosylhomocysteine nucleosidase 3566676 4279871 Sfri_2966 Shewanella frigidimarina NCIMB 400 adenosylhomocysteine nucleosidase YP_751644.1 3565984 D 318167 CDS YP_751645.1 114564131 4279872 3566760..3567767 1 NC_008345.1 KEGG: son:SO1321 CobD-related protein; CobD-like protein 3567767 4279872 Sfri_2967 Shewanella frigidimarina NCIMB 400 CobD-like protein YP_751645.1 3566760 D 318167 CDS YP_751646.1 114564132 4279873 3567966..3568355 1 NC_008345.1 KEGG: son:SO1320 hypothetical protein; hypothetical protein 3568355 4279873 Sfri_2968 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751646.1 3567966 D 318167 CDS YP_751647.1 114564133 4279874 3568352..3568978 1 NC_008345.1 PFAM: protein of unknown function UPF0126; KEGG: son:SO1319 hypothetical protein; hypothetical protein 3568978 4279874 Sfri_2969 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751647.1 3568352 D 318167 CDS YP_751648.1 114564134 4279875 3568980..3569456 1 NC_008345.1 KEGG: son:SO1318 hypothetical protein; hypothetical protein 3569456 4279875 Sfri_2970 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751648.1 3568980 D 318167 CDS YP_751649.1 114564135 4279876 complement(3569551..3570747) 1 NC_008345.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 3570747 4279876 Sfri_2971 Shewanella frigidimarina NCIMB 400 tyrosyl-tRNA synthetase YP_751649.1 3569551 R 318167 CDS YP_751650.1 114564136 4279877 3570873..3572411 1 NC_008345.1 PFAM: peptidase M23B; KEGG: son:SO1314 peptidase, M23/M37 family; peptidase M23B 3572411 4279877 Sfri_2972 Shewanella frigidimarina NCIMB 400 peptidase M23B YP_751650.1 3570873 D 318167 CDS YP_751651.1 114564137 4279878 3572448..3573560 1 NC_008345.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 3573560 anmK 4279878 anmK Shewanella frigidimarina NCIMB 400 anhydro-N-acetylmuramic acid kinase YP_751651.1 3572448 D 318167 CDS YP_751652.1 114564138 4279879 3573663..3574061 1 NC_008345.1 KEGG: son:SO1306 hypothetical protein; hypothetical protein 3574061 4279879 Sfri_2974 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751652.1 3573663 D 318167 CDS YP_751653.1 114564139 4279880 3574068..3574532 1 NC_008345.1 KEGG: son:SO1305 hypothetical protein; hypothetical protein 3574532 4279880 Sfri_2975 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751653.1 3574068 D 318167 CDS YP_751654.1 114564140 4279881 complement(3574935..3575285) 1 NC_008345.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 3575285 4279881 Sfri_2976 Shewanella frigidimarina NCIMB 400 iron-sulfur cluster insertion protein ErpA YP_751654.1 3574935 R 318167 CDS YP_751655.1 114564141 4279882 complement(3575307..3576080) 1 NC_008345.1 KEGG: son:SO1303 hypothetical protein; hypothetical protein 3576080 4279882 Sfri_2977 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751655.1 3575307 R 318167 CDS YP_751656.1 114564142 4279883 3576404..3578128 1 NC_008345.1 PFAM: Cl- channel, voltage-gated family protein; KEGG: son:SO1302 chloride channel; Cl- channel, voltage-gated family protein 3578128 4279883 Sfri_2978 Shewanella frigidimarina NCIMB 400 Cl- channel, voltage-gated family protein YP_751656.1 3576404 D 318167 CDS YP_751657.1 114564143 4279884 3578635..3579654 1 NC_008345.1 Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase 3579654 4279884 Sfri_2979 Shewanella frigidimarina NCIMB 400 aspartate carbamoyltransferase YP_751657.1 3578635 D 318167 CDS YP_751658.1 114564144 4279885 3579681..3580967 1 NC_008345.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3580967 4279885 Sfri_2980 Shewanella frigidimarina NCIMB 400 glutamate-1-semialdehyde aminotransferase YP_751658.1 3579681 D 318167 CDS YP_751659.1 114564145 4279886 3581292..3582539 1 NC_008345.1 PFAM: Citrate transporter; KEGG: sde:Sde_2571 endonuclease III/Nth; citrate transporter 3582539 4279886 Sfri_2981 Shewanella frigidimarina NCIMB 400 citrate transporter YP_751659.1 3581292 D 318167 CDS YP_751660.1 114564146 4279887 complement(3582628..3583737) 1 NC_008345.1 KEGG: son:SO1298 general secretion pathway protein B; general secretion pathway protein B 3583737 4279887 Sfri_2982 Shewanella frigidimarina NCIMB 400 general secretion pathway protein B YP_751660.1 3582628 R 318167 CDS YP_751661.1 114564147 4279888 complement(3583737..3585410) 1 NC_008345.1 PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: son:SO1297 general secretion pathway protein A; peptidoglycan binding domain-containing protein 3585410 4279888 Sfri_2983 Shewanella frigidimarina NCIMB 400 peptidoglycan binding domain-containing protein YP_751661.1 3583737 R 318167 CDS YP_751662.1 114564148 4279889 3585541..3586785 1 NC_008345.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: vfi:VF2244 tRNA nucleotidyltransferase; metal dependent phosphohydrolase 3586785 4279889 Sfri_2984 Shewanella frigidimarina NCIMB 400 metal dependent phosphohydrolase YP_751662.1 3585541 D 318167 CDS YP_751663.1 114564149 4279890 3587054..3587320 1 NC_008345.1 KEGG: son:SO1295 major outer membrane lipoprotein, putative; major outer membrane lipoprotein, putative 3587320 4279890 Sfri_2985 Shewanella frigidimarina NCIMB 400 major outer membrane lipoprotein, putative YP_751663.1 3587054 D 318167 CDS YP_751664.1 114564150 4279891 3587379..3587723 1 NC_008345.1 KEGG: tcr:508693.190 hypothetical protein Pfam: Plasmodium_HRP TolA PROSITE: GLU_RICH; hypothetical protein 3587723 4279891 Sfri_2986 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751664.1 3587379 D 318167 CDS YP_751665.1 114564151 4279892 complement(3588010..3588852) 1 NC_008345.1 KEGG: son:SO1294 ribosomal RNA large subunit methyltransferase A, putative; ribosomal RNA large subunit methyltransferase A 3588852 4279892 Sfri_2987 Shewanella frigidimarina NCIMB 400 ribosomal RNA large subunit methyltransferase A YP_751665.1 3588010 R 318167 CDS YP_751666.1 114564152 4279893 complement(3588959..3589759) 1 NC_008345.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 3589759 4279893 Sfri_2988 Shewanella frigidimarina NCIMB 400 undecaprenyl pyrophosphate phosphatase YP_751666.1 3588959 R 318167 CDS YP_751667.1 114564153 4279894 complement(3589794..3590309) 1 NC_008345.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: son:SO1292 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3590309 4279894 Sfri_2989 Shewanella frigidimarina NCIMB 400 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_751667.1 3589794 R 318167 CDS YP_751668.1 114564154 4279895 complement(3590346..3590699) 1 NC_008345.1 TIGRFAM: dihydroneopterin aldolase; KEGG: son:SO1291 dihydroneopterin aldolase; dihydroneopterin aldolase 3590699 4279895 Sfri_2990 Shewanella frigidimarina NCIMB 400 dihydroneopterin aldolase YP_751668.1 3590346 R 318167 CDS YP_751669.1 114564155 4279896 3590979..3591572 1 NC_008345.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 3591572 4279896 Sfri_2991 Shewanella frigidimarina NCIMB 400 putative glycerol-3-phosphate acyltransferase PlsY YP_751669.1 3590979 D 318167 CDS YP_751670.1 114564156 4279897 complement(3591651..3592667) 1 NC_008345.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 3592667 4279897 Sfri_2992 Shewanella frigidimarina NCIMB 400 putative DNA-binding/iron metalloprotein/AP endonuclease YP_751670.1 3591651 R 318167 CDS YP_751671.1 114564157 4279898 3593142..3593357 1 NC_008345.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3593357 rpsU 4279898 rpsU Shewanella frigidimarina NCIMB 400 30S ribosomal protein S21 YP_751671.1 3593142 D 318167 CDS YP_751672.1 114564158 4279899 3593365..3593808 1 NC_008345.1 PFAM: GatB/Yqey domain protein; KEGG: son:SO1287 hypothetical protein; GatB/Yqey domain-containing protein 3593808 4279899 Sfri_2994 Shewanella frigidimarina NCIMB 400 GatB/Yqey domain-containing protein YP_751672.1 3593365 D 318167 CDS YP_751673.1 114564159 4279900 3593898..3595625 1 NC_008345.1 KEGG: son:SO1286 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase DnaG, DnaB-binding; DNA primase catalytic core, N-terminal domain protein; SMART: Toprim sub domain protein; DNA primase 3595625 4279900 Sfri_2995 Shewanella frigidimarina NCIMB 400 DNA primase YP_751673.1 3593898 D 318167 CDS YP_751674.1 114564160 4279901 3595767..3597611 1 NC_008345.1 TIGRFAM: RNA polymerase sigma factor RpoD; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: son:SO1284 RNA polymerase sigma-70 factor; RNA polymerase sigma-70 subunit RpoD 3597611 4279901 Sfri_2996 Shewanella frigidimarina NCIMB 400 RNA polymerase sigma-70 subunit RpoD YP_751674.1 3595767 D 318167 CDS YP_751675.1 114564161 4279902 3599501..3600457 1 NC_008345.1 KEGG: hch:HCH_00813 hypothetical protein; hypothetical protein 3600457 4279902 Sfri_2998 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751675.1 3599501 D 318167 CDS YP_751676.1 114564162 4279903 complement(3600502..3602148) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; Cache domain protein; KEGG: tdn:Tmden_0836 diguanylate cyclase (GGDEF domain); diguanylate cyclase 3602148 4279903 Sfri_2999 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_751676.1 3600502 R 318167 CDS YP_751677.1 114564163 4279904 complement(3602336..3603058) 1 NC_008345.1 PFAM: protein of unknown function DUF599; KEGG: son:SO3776 hypothetical protein; hypothetical protein 3603058 4279904 Sfri_3000 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751677.1 3602336 R 318167 CDS YP_751678.1 114564164 4279905 complement(3603144..3603803) 1 NC_008345.1 PFAM: pseudouridine synthase; KEGG: pha:PSHAa1206 23S rRNA pseudouridylate synthase; pseudouridine synthase 3603803 4279905 Sfri_3001 Shewanella frigidimarina NCIMB 400 pseudouridine synthase YP_751678.1 3603144 R 318167 CDS YP_751679.1 114564165 4279906 complement(3603898..3606015) 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO1278 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3606015 4279906 Sfri_3002 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_751679.1 3603898 R 318167 CDS YP_751680.1 114564166 4279907 complement(3606150..3607424) 1 NC_008345.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 3607424 4279907 Sfri_3003 Shewanella frigidimarina NCIMB 400 4-aminobutyrate aminotransferase YP_751680.1 3606150 R 318167 CDS YP_751681.1 114564167 4279908 complement(3607436..3608884) 1 NC_008345.1 KEGG: son:SO1275 succinate-semialdehyde dehydrogenase (NADP+); TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate-semialdehyde dehydrogenase 3608884 4279908 Sfri_3004 Shewanella frigidimarina NCIMB 400 succinate-semialdehyde dehydrogenase YP_751681.1 3607436 R 318167 CDS YP_751682.1 114564168 4279909 complement(3608965..3610251) 1 NC_008345.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO1274 probable oxidoreductase; FAD dependent oxidoreductase 3610251 4279909 Sfri_3005 Shewanella frigidimarina NCIMB 400 FAD dependent oxidoreductase YP_751682.1 3608965 R 318167 CDS YP_751683.1 114564169 4279910 complement(3610459..3611274) 1 NC_008345.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1273 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3611274 4279910 Sfri_3006 Shewanella frigidimarina NCIMB 400 binding-protein-dependent transport system inner membrane protein YP_751683.1 3610459 R 318167 CDS YP_751684.1 114564170 4279911 complement(3611271..3612170) 1 NC_008345.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1272 polyamine ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 3612170 4279911 Sfri_3007 Shewanella frigidimarina NCIMB 400 binding-protein-dependent transport systems inner membrane component YP_751684.1 3611271 R 318167 CDS YP_751685.1 114564171 4279912 complement(3612167..3613303) 1 NC_008345.1 KEGG: son:SO1271 polyamine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 3613303 4279912 Sfri_3008 Shewanella frigidimarina NCIMB 400 spermidine/putrescine ABC transporter ATPase YP_751685.1 3612167 R 318167 CDS YP_751686.1 114564172 4279913 complement(3613463..3614563) 1 NC_008345.1 PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO1270 polyamine ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein 3614563 4279913 Sfri_3009 Shewanella frigidimarina NCIMB 400 extracellular solute-binding protein YP_751686.1 3613463 R 318167 CDS YP_751687.1 114564173 4279914 complement(3614822..3616222) 1 NC_008345.1 PFAM: aminotransferase class-III; KEGG: cps:CPS_4663 aminotransferase, class III; putative aminotransferase 3616222 4279914 Sfri_3010 Shewanella frigidimarina NCIMB 400 putative aminotransferase YP_751687.1 3614822 R 318167 CDS YP_751688.1 114564174 4279915 complement(3616320..3617675) 1 NC_008345.1 PFAM: glutamine synthetase, catalytic region; KEGG: son:SO1268 glutamine synthetase; glutamate--ammonia ligase 3617675 4279915 Sfri_3011 Shewanella frigidimarina NCIMB 400 glutamate--ammonia ligase YP_751688.1 3616320 R 318167 CDS YP_751689.1 114564175 4279916 complement(3617678..3618442) 1 NC_008345.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: son:SO1267 hypothetical glutamine amidotransferase; peptidase C26 3618442 4279916 Sfri_3012 Shewanella frigidimarina NCIMB 400 peptidase C26 YP_751689.1 3617678 R 318167 CDS YP_751690.1 114564176 4279917 complement(3618887..3619435) 1 NC_008345.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: son:SO1265 transcriptional regulator, putative; XRE family transcriptional regulator 3619435 4279917 Sfri_3013 Shewanella frigidimarina NCIMB 400 XRE family transcriptional regulator YP_751690.1 3618887 R 318167 CDS YP_751691.1 114564177 4279918 3619669..3620976 1 NC_008345.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO1264 hypothetical oxidoreductase; FAD dependent oxidoreductase 3620976 4279918 Sfri_3014 Shewanella frigidimarina NCIMB 400 FAD dependent oxidoreductase YP_751691.1 3619669 D 318167 CDS YP_751692.1 114564178 4279919 complement(3621622..3623058) 1 NC_008345.1 hypothetical protein 3623058 4279919 Sfri_3015 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751692.1 3621622 R 318167 CDS YP_751693.1 114564179 4279920 3623223..3623534 1 NC_008345.1 PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 3623534 4279920 Sfri_3016 Shewanella frigidimarina NCIMB 400 transposase IS3/IS911 family protein YP_751693.1 3623223 D 318167 CDS YP_751694.1 114564180 4279921 3623588..3624400 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 3624400 4279921 Sfri_3017 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_751694.1 3623588 D 318167 CDS YP_751695.1 114564181 4279922 complement(3624789..3625505) 1 NC_008345.1 KEGG: vvy:VV2226 hypothetical protein; hypothetical protein 3625505 4279922 Sfri_3018 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751695.1 3624789 R 318167 CDS YP_751696.1 114564182 4279923 complement(3626410..3627243) 1 NC_008345.1 PFAM: Rhodanese domain protein; KEGG: son:SO1261 mercaptopyruvate sulfurtransferase; 3-mercaptopyruvate sulfurtransferase 3627243 4279923 Sfri_3019 Shewanella frigidimarina NCIMB 400 3-mercaptopyruvate sulfurtransferase YP_751696.1 3626410 R 318167 CDS YP_751697.1 114564183 4279924 complement(3627294..3627716) 1 NC_008345.1 KEGG: hch:HCH_02647 hypothetical protein; hypothetical protein 3627716 4279924 Sfri_3020 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751697.1 3627294 R 318167 CDS YP_751698.1 114564184 4279925 complement(3627953..3629449) 1 NC_008345.1 PFAM: aldehyde dehydrogenase; KEGG: son:SO3496 aldehyde dehydrogenase; aldehyde dehydrogenase 3629449 4279925 Sfri_3021 Shewanella frigidimarina NCIMB 400 aldehyde dehydrogenase YP_751698.1 3627953 R 318167 CDS YP_751699.1 114564185 4279926 3629762..3631114 1 NC_008345.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 3631114 4279926 Sfri_3022 Shewanella frigidimarina NCIMB 400 beta alanine--pyruvate transaminase YP_751699.1 3629762 D 318167 CDS YP_751700.1 114564186 4279927 3631168..3632667 1 NC_008345.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: hch:HCH_01157 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 3632667 4279927 Sfri_3023 Shewanella frigidimarina NCIMB 400 methylmalonate-semialdehyde dehydrogenase YP_751700.1 3631168 D 318167 CDS YP_751701.1 114564187 4279928 3632680..3633054 1 NC_008345.1 PFAM: protein of unknown function DUF861, cupin_3; KEGG: son:SO3501 hypothetical protein; hypothetical protein 3633054 4279928 Sfri_3024 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751701.1 3632680 D 318167 CDS YP_751702.1 114564188 4279929 3633175..3633897 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO3502 hypothetical protein; hypothetical protein 3633897 4279929 Sfri_3025 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751702.1 3633175 D 318167 CDS YP_751703.1 114564189 4279930 complement(3634028..3634207) 1 NC_008345.1 hypothetical protein 3634207 4279930 Sfri_3026 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751703.1 3634028 R 318167 CDS YP_751704.1 114564190 4279931 3634615..3634959 1 NC_008345.1 KEGG: son:SO3374 hypothetical protein; hypothetical protein 3634959 4279931 Sfri_3027 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751704.1 3634615 D 318167 CDS YP_751705.1 114564191 4279932 complement(3635049..3635693) 1 NC_008345.1 KEGG: son:SO3376 hypothetical protein; hypothetical protein 3635693 4279932 Sfri_3028 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751705.1 3635049 R 318167 CDS YP_751706.1 114564192 4279933 complement(3635693..3636304) 1 NC_008345.1 KEGG: son:SO3377 hypothetical protein; hypothetical protein 3636304 4279933 Sfri_3029 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751706.1 3635693 R 318167 CDS YP_751707.1 114564193 4279934 complement(3636391..3636981) 1 NC_008345.1 KEGG: son:SO3378 hypothetical protein; hypothetical protein 3636981 4279934 Sfri_3030 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751707.1 3636391 R 318167 CDS YP_751708.1 114564194 4279935 complement(3637002..3638240) 1 NC_008345.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO3379 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 3638240 4279935 Sfri_3031 Shewanella frigidimarina NCIMB 400 cyclopropane-fatty-acyl-phospholipid synthase YP_751708.1 3637002 R 318167 CDS YP_751709.1 114564195 4279936 complement(3638341..3639162) 1 NC_008345.1 PFAM: protein of unknown function DUF1365; KEGG: son:SO3380 hypothetical protein; hypothetical protein 3639162 4279936 Sfri_3032 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751709.1 3638341 R 318167 CDS YP_751710.1 114564196 4279937 complement(3639159..3640427) 1 NC_008345.1 PFAM: amine oxidase; KEGG: son:SO3381 hypothetical protein; amine oxidase 3640427 4279937 Sfri_3033 Shewanella frigidimarina NCIMB 400 amine oxidase YP_751710.1 3639159 R 318167 CDS YP_751711.1 114564197 4279938 complement(3640482..3641231) 1 NC_008345.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO3382 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 3641231 4279938 Sfri_3034 Shewanella frigidimarina NCIMB 400 short-chain dehydrogenase/reductase SDR YP_751711.1 3640482 R 318167 CDS YP_751712.1 114564198 4279939 complement(3641231..3641734) 1 NC_008345.1 PFAM: protein of unknown function DUF1486; KEGG: son:SO3383 transcriptional regulator-related protein; hypothetical protein 3641734 4279939 Sfri_3035 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751712.1 3641231 R 318167 CDS YP_751713.1 114564199 4279940 complement(3641962..3643371) 1 NC_008345.1 PFAM: cytochrome c552; KEGG: stm:STM4277 nitrite reductase periplasmic cytochrome c552; nitrite reductase (cytochrome; ammonia-forming) 3643371 4279940 Sfri_3036 Shewanella frigidimarina NCIMB 400 nitrite reductase (cytochrome; ammonia-forming) YP_751713.1 3641962 R 318167 CDS YP_751714.1 114564200 4279941 complement(3643502..3644713) 1 NC_008345.1 PFAM: NnrS family protein; KEGG: vch:VC2330 putative uncharacterized protein involved in response to NO; NnrS family protein 3644713 4279941 Sfri_3037 Shewanella frigidimarina NCIMB 400 NnrS family protein YP_751714.1 3643502 R 318167 CDS YP_751715.1 114564201 4279942 complement(3645027..3646460) 1 NC_008345.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: son:SO3384 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase 3646460 4279942 Sfri_3038 Shewanella frigidimarina NCIMB 400 deoxyribodipyrimidine photo-lyase YP_751715.1 3645027 R 318167 CDS YP_751716.1 114564202 4279943 complement(3646472..3647434) 1 NC_008345.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: son:SO3386 hypothetical protein; hypothetical protein 3647434 4279943 Sfri_3039 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751716.1 3646472 R 318167 CDS YP_751717.1 114564203 4279944 complement(3647694..3648623) 1 NC_008345.1 PFAM: protein of unknown function DUF368; KEGG: son:SO1400 hypothetical protein; hypothetical protein 3648623 4279944 Sfri_3040 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751717.1 3647694 R 318167 CDS YP_751718.1 114564204 4279945 3648763..3649239 1 NC_008345.1 KEGG: cps:CPS_4932 hypothetical protein; hypothetical protein 3649239 4279945 Sfri_3041 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751718.1 3648763 D 318167 CDS YP_751719.1 114564205 4279946 3649284..3650171 1 NC_008345.1 PFAM: band 7 protein; KEGG: son:SO0445 HflC protein, putative; hypothetical protein 3650171 4279946 Sfri_3042 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751719.1 3649284 D 318167 CDS YP_751720.1 114564206 4279947 3650389..3651537 1 NC_008345.1 PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: son:SO1396 hypothetical protein; hypothetical protein 3651537 4279947 Sfri_3043 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751720.1 3650389 D 318167 CDS YP_751721.1 114564207 4279948 3651657..3652007 1 NC_008345.1 PFAM: protein of unknown function DUF1294; KEGG: son:SO1395 membrane protein,putative; hypothetical protein 3652007 4279948 Sfri_3044 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751721.1 3651657 D 318167 CDS YP_751722.1 114564208 4279949 3652116..3652580 1 NC_008345.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1390 peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 3652580 4279949 Sfri_3045 Shewanella frigidimarina NCIMB 400 peptidylprolyl isomerase, FKBP-type YP_751722.1 3652116 D 318167 CDS YP_751723.1 114564209 4279950 complement(3652701..3653915) 1 NC_008345.1 PFAM: peptidase M24; KEGG: cps:CPS_1459 metallopeptidase, M24 family; peptidase M24 3653915 4279950 Sfri_3046 Shewanella frigidimarina NCIMB 400 peptidase M24 YP_751723.1 3652701 R 318167 CDS YP_751724.1 114564210 4279951 3654187..3655974 1 NC_008345.1 PFAM: peptidase M24; KEGG: son:SO1388 aminopeptidase P, putative; peptidase M24 3655974 4279951 Sfri_3047 Shewanella frigidimarina NCIMB 400 peptidase M24 YP_751724.1 3654187 D 318167 CDS YP_751725.1 114564211 4279952 3656744..3658099 1 NC_008345.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: son:SO1236 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 3658099 4279952 Sfri_3048 Shewanella frigidimarina NCIMB 400 xanthine/uracil/vitamin C permease YP_751725.1 3656744 D 318167 CDS YP_751726.1 114564212 4279953 3658718..3660181 1 NC_008345.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 3660181 4279953 Sfri_3049 Shewanella frigidimarina NCIMB 400 F0F1 ATP synthase subunit beta YP_751726.1 3658718 D 318167 CDS YP_751727.1 114564213 4279954 3660218..3660628 1 NC_008345.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 3660628 4279954 Sfri_3050 Shewanella frigidimarina NCIMB 400 F0F1 ATP synthase subunit epsilon YP_751727.1 3660218 D 318167 CDS YP_751728.1 114564214 4279955 3660829..3661206 1 NC_008345.1 TIGRFAM: F0F1-ATPase subunit, putative; KEGG: mba:Mbar_A3104 H(+)-transporting ATP synthase, gene 1; F0F1-ATPase subunit, putative 3661206 4279955 Sfri_3051 Shewanella frigidimarina NCIMB 400 F0F1-ATPase subunit, putative YP_751728.1 3660829 D 318167 CDS YP_751729.1 114564215 4279956 3661313..3661657 1 NC_008345.1 KEGG: rfr:Rfer_1164 hypothetical protein; hypothetical protein 3661657 4279956 Sfri_3052 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751729.1 3661313 D 318167 CDS YP_751730.1 114564216 4279957 3661654..3662394 1 NC_008345.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 3662394 4279957 Sfri_3053 Shewanella frigidimarina NCIMB 400 F0F1 ATP synthase subunit A YP_751730.1 3661654 D 318167 CDS YP_751731.1 114564217 4279958 3662426..3662707 1 NC_008345.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 3662707 4279958 Sfri_3054 Shewanella frigidimarina NCIMB 400 F0F1 ATP synthase subunit C YP_751731.1 3662426 D 318167 CDS YP_751732.1 114564218 4279959 3662711..3663547 1 NC_008345.1 KEGG: mac:MA2435 H(+)-transporting ATP synthase, subunit B; H(+)-transporting ATP synthase subunit B 3663547 4279959 Sfri_3055 Shewanella frigidimarina NCIMB 400 H(+)-transporting ATP synthase subunit B YP_751732.1 3662711 D 318167 CDS YP_751733.1 114564219 4279960 3663531..3665084 1 NC_008345.1 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 3665084 4279960 Sfri_3056 Shewanella frigidimarina NCIMB 400 F0F1 ATP synthase subunit alpha YP_751733.1 3663531 D 318167 CDS YP_751734.1 114564220 4279961 3665081..3665959 1 NC_008345.1 PFAM: H+transporting two-sector ATPase, gamma subunit; KEGG: rfr:Rfer_1169 H+-transporting two-sector ATPase, gamma subunit; H+transporting two-sector ATPase subunit gamma 3665959 4279961 Sfri_3057 Shewanella frigidimarina NCIMB 400 H+transporting two-sector ATPase subunit gamma YP_751734.1 3665081 D 318167 CDS YP_751735.1 114564221 4279962 3666276..3667049 1 NC_008345.1 PFAM: MltA-interacting MipA family protein; KEGG: vch:VC1318 outer membrane protein OmpV; MltA-interacting MipA family protein 3667049 4279962 Sfri_3058 Shewanella frigidimarina NCIMB 400 MltA-interacting MipA family protein YP_751735.1 3666276 D 318167 CDS YP_751736.1 114564222 4279963 3667069..3667527 1 NC_008345.1 KEGG: ccr:CC0125 hypothetical protein; hypothetical protein 3667527 4279963 Sfri_3059 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751736.1 3667069 D 318167 CDS YP_751737.1 114564223 4279964 3667715..3668713 1 NC_008345.1 KEGG: vvu:VV21138 hypothetical protein; hypothetical protein 3668713 4279964 Sfri_3060 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751737.1 3667715 D 318167 CDS YP_751738.1 114564224 4279965 complement(3668852..3670162) 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sde:Sde_0291 helix-turn-helix, AraC type; periplasmic sensor signal transduction histidine kinase 3670162 4279965 Sfri_3061 Shewanella frigidimarina NCIMB 400 periplasmic sensor signal transduction histidine kinase YP_751738.1 3668852 R 318167 CDS YP_751739.1 114564225 4279966 complement(3670159..3670863) 1 NC_008345.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cps:CPS_1426 transcriptional regulatory protein RstA; two component transcriptional regulator, winged helix family protein 3670863 4279966 Sfri_3062 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, winged helix family protein YP_751739.1 3670159 R 318167 CDS YP_751740.1 114564226 4279967 complement(3670866..3671285) 1 NC_008345.1 KEGG: sde:Sde_0289 hypothetical protein; hypothetical protein 3671285 4279967 Sfri_3063 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751740.1 3670866 R 318167 CDS YP_751741.1 114564227 4279968 complement(3671294..3672154) 1 NC_008345.1 PFAM: MltA-interacting MipA family protein; KEGG: sde:Sde_0288 hypothetical protein; MltA-interacting MipA family protein 3672154 4279968 Sfri_3064 Shewanella frigidimarina NCIMB 400 MltA-interacting MipA family protein YP_751741.1 3671294 R 318167 CDS YP_751742.1 114564228 4279969 complement(3672397..3672819) 1 NC_008345.1 PFAM: regulatory protein, MarR; KEGG: ppr:PBPRB1248 hypothetical transcriptional regulator, MarR family; transcriptional regulator, MarR family protein 3672819 4279969 Sfri_3065 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MarR family protein YP_751742.1 3672397 R 318167 CDS YP_751743.1 114564229 4279970 3672919..3673365 1 NC_008345.1 hypothetical protein 3673365 4279970 Sfri_3066 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751743.1 3672919 D 318167 CDS YP_751744.1 114564230 4279971 3673410..3673847 1 NC_008345.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: cps:CPS_4882 hypothetical protein; cupin 3673847 4279971 Sfri_3067 Shewanella frigidimarina NCIMB 400 cupin YP_751744.1 3673410 D 318167 CDS YP_751745.1 114564231 4279972 3674357..3675658 1 NC_008345.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1383 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 3675658 4279972 Sfri_3068 Shewanella frigidimarina NCIMB 400 DEAD/DEAH box helicase YP_751745.1 3674357 D 318167 CDS YP_751746.1 114564232 4279973 3675784..3676419 1 NC_008345.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO1381 hypothetical protein; redoxin domain-containing protein 3676419 4279973 Sfri_3069 Shewanella frigidimarina NCIMB 400 redoxin domain-containing protein YP_751746.1 3675784 D 318167 CDS YP_751747.1 114564233 4279974 3676745..3677935 1 NC_008345.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 3677935 purT 4279974 purT Shewanella frigidimarina NCIMB 400 phosphoribosylglycinamide formyltransferase 2 YP_751747.1 3676745 D 318167 CDS YP_751748.1 114564234 4279975 complement(3678517..3679470) 1 NC_008345.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO3631 glycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 3679470 4279975 Sfri_3072 Shewanella frigidimarina NCIMB 400 D-isomer specific 2-hydroxyacid dehydrogenase YP_751748.1 3678517 R 318167 CDS YP_751749.1 114564235 4279976 complement(3679517..3680290) 1 NC_008345.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 3680290 djlA 4279976 djlA Shewanella frigidimarina NCIMB 400 Dna-J like membrane chaperone protein YP_751749.1 3679517 R 318167 CDS YP_751750.1 114564236 4279977 complement(3680350..3681048) 1 NC_008345.1 PFAM: Nucleotidyl transferase; KEGG: son:SO3634 nucleotidyltransferase family protein; nucleotidyl transferase 3681048 4279977 Sfri_3074 Shewanella frigidimarina NCIMB 400 nucleotidyl transferase YP_751750.1 3680350 R 318167 CDS YP_751751.1 114564237 4279978 complement(3681045..3682073) 1 NC_008345.1 PFAM: aminoglycoside phosphotransferase; KEGG: son:SO3635 hypothetical phosphotransferase; aminoglycoside phosphotransferase 3682073 4279978 Sfri_3075 Shewanella frigidimarina NCIMB 400 aminoglycoside phosphotransferase YP_751751.1 3681045 R 318167 CDS YP_751752.1 114564238 4279979 3682217..3684517 1 NC_008345.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: son:SO3636 organic solvent tolerance protein; organic solvent tolerance protein 3684517 4279979 Sfri_3076 Shewanella frigidimarina NCIMB 400 organic solvent tolerance protein YP_751752.1 3682217 D 318167 CDS YP_751753.1 114564239 4279980 3684662..3685966 1 NC_008345.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO3637 survival protein surA; PpiC-type peptidyl-prolyl cis-trans isomerase 3685966 4279980 Sfri_3077 Shewanella frigidimarina NCIMB 400 PpiC-type peptidyl-prolyl cis-trans isomerase YP_751753.1 3684662 D 318167 CDS YP_751754.1 114564240 4279981 3685976..3686959 1 NC_008345.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3686959 pdxA 4279981 pdxA Shewanella frigidimarina NCIMB 400 4-hydroxythreonine-4-phosphate dehydrogenase YP_751754.1 3685976 D 318167 CDS YP_751755.1 114564241 4279982 3686969..3687775 1 NC_008345.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3687775 ksgA 4279982 ksgA Shewanella frigidimarina NCIMB 400 dimethyladenosine transferase YP_751755.1 3686969 D 318167 CDS YP_751756.1 114564242 4279983 3687824..3688204 1 NC_008345.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 3688204 apaG 4279983 apaG Shewanella frigidimarina NCIMB 400 ApaG protein YP_751756.1 3687824 D 318167 CDS YP_751757.1 114564243 4279984 3688208..3689026 1 NC_008345.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 3689026 apaH 4279984 apaH Shewanella frigidimarina NCIMB 400 diadenosine tetraphosphatase YP_751757.1 3688208 D 318167 CDS YP_751758.1 114564244 4279985 3689181..3691202 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3642 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3691202 4279985 Sfri_3082 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_751758.1 3689181 D 318167 CDS YP_751759.1 114564245 4279986 complement(3691675..3692061) 1 NC_008345.1 KEGG: son:SO3645 hypothetical protein; hypothetical protein 3692061 4279986 Sfri_3083 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751759.1 3691675 R 318167 CDS YP_751760.1 114564246 4279987 complement(3692159..3692641) 1 NC_008345.1 PFAM: dihydrofolate reductase region; KEGG: son:SO3646 dihydrofolate reductase; dihydrofolate reductase 3692641 4279987 Sfri_3084 Shewanella frigidimarina NCIMB 400 dihydrofolate reductase YP_751760.1 3692159 R 318167 CDS YP_751761.1 114564247 4279988 complement(3692661..3693131) 1 NC_008345.1 KEGG: son:SO3647 hypothetical protein; hypothetical protein 3693131 4279988 Sfri_3085 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751761.1 3692661 R 318167 CDS YP_751762.1 114564248 4279989 complement(3693131..3693889) 1 NC_008345.1 PFAM: protein of unknown function DUF1212; KEGG: son:SO3648 hypothetical protein; hypothetical protein 3693889 4279989 Sfri_3086 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751762.1 3693131 R 318167 CDS YP_751763.1 114564249 4279990 complement(3693910..3695076) 1 NC_008345.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 3695076 obgE 4279990 obgE Shewanella frigidimarina NCIMB 400 GTPase ObgE YP_751763.1 3693910 R 318167 CDS YP_751764.1 114564250 4279991 complement(3695277..3695531) 1 NC_008345.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 3695531 rpmA 4279991 rpmA Shewanella frigidimarina NCIMB 400 50S ribosomal protein L27 YP_751764.1 3695277 R 318167 CDS YP_751765.1 114564251 4279992 complement(3695548..3695859) 1 NC_008345.1 PFAM: ribosomal protein L21; KEGG: son:SO3652 ribosomal protein L21; 50S ribosomal protein L21 3695859 rplU 4279992 rplU Shewanella frigidimarina NCIMB 400 50S ribosomal protein L21 YP_751765.1 3695548 R 318167 CDS YP_751766.1 114564252 4279993 3696263..3697234 1 NC_008345.1 PFAM: Polyprenyl synthetase; KEGG: son:SO3653 octaprenyl-diphosphate synthase; trans-hexaprenyltranstransferase 3697234 4279993 Sfri_3090 Shewanella frigidimarina NCIMB 400 trans-hexaprenyltranstransferase YP_751766.1 3696263 D 318167 CDS YP_751767.1 114564253 4279994 complement(3697343..3698005) 1 NC_008345.1 TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: son:SO3654 uracil-DNA glycosylase; uracil-DNA glycosylase 3698005 4279994 Sfri_3091 Shewanella frigidimarina NCIMB 400 uracil-DNA glycosylase YP_751767.1 3697343 R 318167 CDS YP_751768.1 114564254 4279995 3698085..3698645 1 NC_008345.1 PFAM: methylation site containing protein; KEGG: son:SO3655 pilin, putative; methylation site containing protein 3698645 4279995 Sfri_3092 Shewanella frigidimarina NCIMB 400 methylation site containing protein YP_751768.1 3698085 D 318167 CDS YP_751769.1 114564255 4279996 3698716..3699042 1 NC_008345.1 KEGG: son:SO3656 hypothetical protein; hypothetical protein 3699042 4279996 Sfri_3093 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751769.1 3698716 D 318167 CDS YP_751770.1 114564256 4279997 complement(3699238..3699855) 1 NC_008345.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO3657 transporter, LysE family; lysine exporter protein LysE/YggA 3699855 4279997 Sfri_3094 Shewanella frigidimarina NCIMB 400 lysine exporter protein LysE/YggA YP_751770.1 3699238 R 318167 CDS YP_751771.1 114564257 4279998 3699992..3700525 1 NC_008345.1 KEGG: son:SO3659 thiol:disulfide interchange protein, putative; thiol:disulfide interchange protein, putative 3700525 4279998 Sfri_3095 Shewanella frigidimarina NCIMB 400 thiol:disulfide interchange protein, putative YP_751771.1 3699992 D 318167 CDS YP_751772.1 114564258 4279999 complement(3700647..3703202) 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAb0299 putative TonB-dependent outer membrane receptor; TonB-dependent receptor 3703202 4279999 Sfri_3096 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor YP_751772.1 3700647 R 318167 CDS YP_751773.1 114564259 4280000 3703662..3705260 1 NC_008345.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO3664 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 3705260 4280000 Sfri_3097 Shewanella frigidimarina NCIMB 400 AMP-dependent synthetase and ligase YP_751773.1 3703662 D 318167 CDS YP_751774.1 114564260 4280001 complement(3705496..3707316) 1 NC_008345.1 KEGG: son:SO3665 ABC transporter, ATP-binding/permease protein, putative; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein 3707316 4280001 Sfri_3098 Shewanella frigidimarina NCIMB 400 lipid ABC transporter ATPase/inner membrane protein YP_751774.1 3705496 R 318167 CDS YP_751775.1 114564261 4280002 3707442..3707960 1 NC_008345.1 PFAM: methylation site containing protein; KEGG: ppr:PBPRA3276 putative MSHA pilin protein MshA; methylation site containing protein 3707960 4280002 Sfri_3099 Shewanella frigidimarina NCIMB 400 methylation site containing protein YP_751775.1 3707442 D 318167 CDS YP_751776.1 114564262 4280003 complement(3707989..3708399) 1 NC_008345.1 KEGG: cps:CPS_4848 hypothetical protein; hypothetical protein 3708399 4280003 Sfri_3100 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751776.1 3707989 R 318167 CDS YP_751777.1 114564263 4280004 3708731..3709909 1 NC_008345.1 PFAM: methyltransferase small; Methyltransferase type 12; KEGG: son:SO1097 putative ribosomal RNA small subunit methyltransferase D; rRNA (guanine-N(2)-)-methyltransferase 3709909 4280004 Sfri_3101 Shewanella frigidimarina NCIMB 400 rRNA (guanine-N(2)-)-methyltransferase YP_751777.1 3708731 D 318167 CDS YP_751778.1 114564264 4280005 complement(3710884..3711624) 1 NC_008345.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pha:PSHAa1739 regulatory protein, GntR; GntR family transcriptional regulator 3711624 4280005 Sfri_3102 Shewanella frigidimarina NCIMB 400 GntR family transcriptional regulator YP_751778.1 3710884 R 318167 CDS YP_751779.1 114564265 4280006 3712472..3714763 1 NC_008345.1 KEGG: pha:PSHAa1749 alginate lyase precursor; Poly(beta-D-mannuronate) lyase 3714763 4280006 Sfri_3103 Shewanella frigidimarina NCIMB 400 Poly(beta-D-mannuronate) lyase YP_751779.1 3712472 D 318167 CDS YP_751780.1 114564266 4280007 3714760..3717042 1 NC_008345.1 PFAM: Heparinase II/III family protein; KEGG: pha:PSHAa1748 chondroitin AC/alginate lyase; heparinase II/III family protein 3717042 4280007 Sfri_3104 Shewanella frigidimarina NCIMB 400 heparinase II/III family protein YP_751780.1 3714760 D 318167 CDS YP_751781.1 114564267 4280008 3717074..3717421 1 NC_008345.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: pha:PSHAa1747 pectin degradation protein (sugar phosphate isomerase); cupin 3717421 4280008 Sfri_3105 Shewanella frigidimarina NCIMB 400 cupin YP_751781.1 3717074 D 318167 CDS YP_751782.1 114564268 4280009 3717418..3718704 1 NC_008345.1 PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_3282 putative hexuronate transporter; major facilitator transporter 3718704 4280009 Sfri_3106 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_751782.1 3717418 D 318167 CDS YP_751783.1 114564269 4280010 3718707..3719648 1 NC_008345.1 PFAM: PfkB domain protein; KEGG: pha:PSHAa1745 ketodeoxygluconokinase; ribokinase-like domain-containing protein 3719648 4280010 Sfri_3107 Shewanella frigidimarina NCIMB 400 ribokinase-like domain-containing protein YP_751783.1 3718707 D 318167 CDS YP_751784.1 114564270 4280011 3719835..3720608 1 NC_008345.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0151 hypothetical SAM-dependent methyltransferase; methyltransferase type 12 3720608 4280011 Sfri_3108 Shewanella frigidimarina NCIMB 400 methyltransferase type 12 YP_751784.1 3719835 D 318167 CDS YP_751785.1 114564271 4280012 complement(3720639..3721517) 1 NC_008345.1 KEGG: son:SO3807 sterol desaturase family protein; sterol desaturase family protein 3721517 4280012 Sfri_3109 Shewanella frigidimarina NCIMB 400 sterol desaturase family protein YP_751785.1 3720639 R 318167 CDS YP_751786.1 114564272 4280013 complement(3721753..3722820) 1 NC_008345.1 KEGG: son:SO3808 hypothetical protein; hypothetical protein 3722820 4280013 Sfri_3110 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751786.1 3721753 R 318167 CDS YP_751787.1 114564273 4280014 3723050..3723616 1 NC_008345.1 KEGG: son:SO3811 lipoprotein, putative; putative lipoprotein 3723616 4280014 Sfri_3111 Shewanella frigidimarina NCIMB 400 putative lipoprotein YP_751787.1 3723050 D 318167 CDS YP_751788.1 114564274 4280015 3723676..3724260 1 NC_008345.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO3812 peptidyl-prolyl cis-trans isomerase A; peptidyl-prolyl cis-trans isomerase, cyclophilin type 3724260 4280015 Sfri_3112 Shewanella frigidimarina NCIMB 400 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_751788.1 3723676 D 318167 CDS YP_751789.1 114564275 4280016 3724588..3724923 1 NC_008345.1 KEGG: son:SO3813 hypothetical protein; hypothetical protein 3724923 4280016 Sfri_3113 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751789.1 3724588 D 318167 CDS YP_751790.1 114564276 4280017 3725052..3726479 1 NC_008345.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3814 AmpG protein, putative; major facilitator transporter 3726479 4280017 Sfri_3114 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_751790.1 3725052 D 318167 CDS YP_751791.1 114564277 4280018 3726903..3727604 1 NC_008345.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3727604 4280018 Sfri_3115 Shewanella frigidimarina NCIMB 400 tRNA guanosine-2'-O-methyltransferase YP_751791.1 3726903 D 318167 CDS YP_751792.1 114564278 4280019 complement(3727802..3728605) 1 NC_008345.1 PFAM: polysaccharide deacetylase; KEGG: cps:CPS_3729 polysaccharide deacetylase family protein; polysaccharide deacetylase 3728605 4280019 Sfri_3116 Shewanella frigidimarina NCIMB 400 polysaccharide deacetylase YP_751792.1 3727802 R 318167 CDS YP_751793.1 114564279 4280020 3728931..3729557 1 NC_008345.1 KEGG: cps:CPS_1552 hypothetical protein; hypothetical protein 3729557 4280020 Sfri_3117 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751793.1 3728931 D 318167 CDS YP_751794.1 114564280 4280021 complement(3729673..3730380) 1 NC_008345.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ppr:PBPRA1226 hypothetical protein; lysine exporter protein LysE/YggA 3730380 4280021 Sfri_3118 Shewanella frigidimarina NCIMB 400 lysine exporter protein LysE/YggA YP_751794.1 3729673 R 318167 CDS YP_751795.1 114564281 4280022 complement(3730607..3730855) 1 NC_008345.1 KEGG: ppr:PBPRA1944 hypothetical protein; hypothetical protein 3730855 4280022 Sfri_3119 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751795.1 3730607 R 318167 CDS YP_751796.1 114564282 4280023 complement(3731139..3733397) 1 NC_008345.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: sde:Sde_1409 signal transduction histidine kinase-like; multi-sensor hybrid histidine kinase 3733397 4280023 Sfri_3120 Shewanella frigidimarina NCIMB 400 multi-sensor hybrid histidine kinase YP_751796.1 3731139 R 318167 CDS YP_751797.1 114564283 4280024 complement(3733384..3734193) 1 NC_008345.1 KEGG: mag:amb1049 ABC-type phosphate/phosphonate transport system; ABC-type phosphate/phosphonate transport system 3734193 4280024 Sfri_3121 Shewanella frigidimarina NCIMB 400 ABC-type phosphate/phosphonate transport system YP_751797.1 3733384 R 318167 CDS YP_751798.1 114564284 4280025 3734625..3736898 1 NC_008345.1 KEGG: ilo:IL1414 catalase; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 3736898 4280025 Sfri_3122 Shewanella frigidimarina NCIMB 400 catalase/peroxidase HPI YP_751798.1 3734625 D 318167 CDS YP_751799.1 114564285 4280026 complement(3737317..3738066) 1 NC_008345.1 hypothetical protein 3738066 4280026 Sfri_3123 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751799.1 3737317 R 318167 CDS YP_751800.1 114564286 4280027 3738593..3739840 1 NC_008345.1 PFAM: beta-lactamase; KEGG: sil:SPO0810 6-aminohexanoate-dimer hydrolase, putative; 6-aminohexanoate-dimer hydrolase 3739840 4280027 Sfri_3124 Shewanella frigidimarina NCIMB 400 6-aminohexanoate-dimer hydrolase YP_751800.1 3738593 D 318167 CDS YP_751801.1 114564287 4280028 complement(3740059..3740511) 1 NC_008345.1 KEGG: son:SO1432 hypothetical protein; hypothetical protein 3740511 4280028 Sfri_3125 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751801.1 3740059 R 318167 CDS YP_751802.1 114564288 4280029 complement(3740574..3741233) 1 NC_008345.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO1431 hypothetical protein; cytoplasmic chaperone TorD family protein 3741233 4280029 Sfri_3126 Shewanella frigidimarina NCIMB 400 cytoplasmic chaperone TorD family protein YP_751802.1 3740574 R 318167 CDS YP_751803.1 114564289 4280030 complement(3741318..3741953) 1 NC_008345.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1430 anaerobic dimethyl sulfoxide reductase, B subunit; 4Fe-4S ferredoxin 3741953 4280030 Sfri_3127 Shewanella frigidimarina NCIMB 400 4Fe-4S ferredoxin YP_751803.1 3741318 R 318167 CDS YP_751804.1 114564290 4280031 complement(3741966..3744395) 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO1429 anaerobic dimethyl sulfoxide reductase, A subunit; anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein 3744395 4280031 Sfri_3128 Shewanella frigidimarina NCIMB 400 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein YP_751804.1 3741966 R 318167 CDS YP_751805.1 114564291 4280032 complement(3744436..3746442) 1 NC_008345.1 KEGG: son:SO1428 outer membrane protein; outer membrane protein 3746442 4280032 Sfri_3129 Shewanella frigidimarina NCIMB 400 outer membrane protein YP_751805.1 3744436 R 318167 CDS YP_751806.1 114564292 4280033 complement(3746458..3747411) 1 NC_008345.1 TIGRFAM: cytochrome C family protein; KEGG: son:SO1427 decaheme cytochrome c; cytochrome C family protein 3747411 4280033 Sfri_3130 Shewanella frigidimarina NCIMB 400 cytochrome C family protein YP_751806.1 3746458 R 318167 CDS YP_751807.1 114564293 4280034 3748558..3748992 1 NC_008345.1 KEGG: vvy:VV1376 hypothetical protein; hypothetical protein 3748992 4280034 Sfri_3131 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751807.1 3748558 D 318167 CDS YP_751808.1 114564294 4280035 3749009..3750160 1 NC_008345.1 PFAM: lipase, class 3; KEGG: vvy:VVA0214 predicted lipase; lipase, class 3 3750160 4280035 Sfri_3132 Shewanella frigidimarina NCIMB 400 lipase, class 3 YP_751808.1 3749009 D 318167 CDS YP_751809.1 114564295 4280036 3750495..3750932 1 NC_008345.1 KEGG: vvy:VV1376 hypothetical protein; hypothetical protein 3750932 4280036 Sfri_3133 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751809.1 3750495 D 318167 CDS YP_751810.1 114564296 4280037 3751405..3751857 1 NC_008345.1 hypothetical protein 3751857 4280037 Sfri_3134 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751810.1 3751405 D 318167 CDS YP_751811.1 114564297 4280038 complement(3751933..3752358) 1 NC_008345.1 PFAM: CBS domain containing protein; KEGG: son:SO0805 CBS domain protein; hypothetical protein 3752358 4280038 Sfri_3135 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751811.1 3751933 R 318167 CDS YP_751812.1 114564298 4280039 complement(3752448..3753182) 1 NC_008345.1 KEGG: cps:CPS_3694 hypothetical protein; hypothetical protein 3753182 4280039 Sfri_3136 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751812.1 3752448 R 318167 CDS YP_751813.1 114564299 4280040 complement(3753450..3755645) 1 NC_008345.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 3755645 4280040 Sfri_3137 Shewanella frigidimarina NCIMB 400 malate synthase G YP_751813.1 3753450 R 318167 CDS YP_751814.1 114564300 4280041 complement(3755917..3756867) 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: hch:HCH_02324 transcriptional regulator; transcriptional regulator, LysR family protein 3756867 4280041 Sfri_3138 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_751814.1 3755917 R 318167 CDS YP_751815.1 114564301 4280042 3756977..3758557 1 NC_008345.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 3758557 4280042 Sfri_3139 Shewanella frigidimarina NCIMB 400 isocitrate lyase YP_751815.1 3756977 D 318167 CDS YP_751816.1 114564302 4280043 3759074..3759976 1 NC_008345.1 KEGG: son:SO0784 hypothetical protein; hypothetical protein 3759976 4280043 Sfri_3140 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751816.1 3759074 D 318167 CDS YP_751817.1 114564303 4280044 3760091..3760789 1 NC_008345.1 hypothetical protein 3760789 4280044 Sfri_3141 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751817.1 3760091 D 318167 CDS YP_751818.1 114564304 4280045 3760767..3761753 1 NC_008345.1 TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; KEGG: mth:MTH830 hypothetical protein; beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein 3761753 4280045 Sfri_3142 Shewanella frigidimarina NCIMB 400 beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein YP_751818.1 3760767 D 318167 CDS YP_751819.1 114564305 4280046 3761746..3762897 1 NC_008345.1 hypothetical protein 3762897 4280046 Sfri_3143 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751819.1 3761746 D 318167 CDS YP_751820.1 114564306 4280047 3762942..3763253 1 NC_008345.1 PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 3763253 4280047 Sfri_3144 Shewanella frigidimarina NCIMB 400 transposase IS3/IS911 family protein YP_751820.1 3762942 D 318167 CDS YP_751821.1 114564307 4280048 3763307..3764119 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 3764119 4280048 Sfri_3145 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_751821.1 3763307 D 318167 CDS YP_751822.1 114564308 4280049 3765462..3766655 1 NC_008345.1 PFAM: transposase, IS4 family protein; KEGG: ret:RHE_CH01332 probable insertion sequence transposase protein, IS10; transposase, IS4 family protein 3766655 4280049 Sfri_3147 Shewanella frigidimarina NCIMB 400 transposase, IS4 family protein YP_751822.1 3765462 D 318167 CDS YP_751823.1 114564309 4280050 3766755..3766997 1 NC_008345.1 hypothetical protein 3766997 4280050 Sfri_3148 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751823.1 3766755 D 318167 CDS YP_751824.1 114564310 4280051 complement(3767594..3770482) 1 NC_008345.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3770482 4280051 Sfri_3149 Shewanella frigidimarina NCIMB 400 glycine dehydrogenase YP_751824.1 3767594 R 318167 CDS YP_751825.1 114564311 4280052 complement(3770722..3771111) 1 NC_008345.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 3771111 4280052 Sfri_3150 Shewanella frigidimarina NCIMB 400 glycine cleavage system protein H YP_751825.1 3770722 R 318167 CDS YP_751826.1 114564312 4280053 complement(3771194..3772288) 1 NC_008345.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 3772288 gcvT 4280053 gcvT Shewanella frigidimarina NCIMB 400 glycine cleavage system aminomethyltransferase T YP_751826.1 3771194 R 318167 CDS YP_751827.1 114564313 4280054 complement(3772508..3773731) 1 NC_008345.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0778 oxidoreductase, FAD-binding, UbiH/Coq6 family; ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein 3773731 4280054 Sfri_3152 Shewanella frigidimarina NCIMB 400 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein YP_751827.1 3772508 R 318167 CDS YP_751828.1 114564314 4280055 complement(3773756..3775030) 1 NC_008345.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0777 2-octaprenyl-6-methoxyphenol hydroxylase; 2-polyprenyl-6-methoxyphenol 4-hydroxylase 3775030 4280055 Sfri_3153 Shewanella frigidimarina NCIMB 400 2-polyprenyl-6-methoxyphenol 4-hydroxylase YP_751828.1 3773756 R 318167 CDS YP_751829.1 114564315 4280056 complement(3775059..3775634) 1 NC_008345.1 TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: son:SO0776 hypothetical protein; yecA family protein 3775634 4280056 Sfri_3154 Shewanella frigidimarina NCIMB 400 yecA family protein YP_751829.1 3775059 R 318167 CDS YP_751830.1 114564316 4280057 3775847..3776146 1 NC_008345.1 PFAM: protein of unknown function DUF710; KEGG: son:SO0775 hypothetical protein; hypothetical protein 3776146 4280057 Sfri_3155 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751830.1 3775847 D 318167 CDS YP_751831.1 114564317 4280058 3776712..3778169 1 NC_008345.1 KEGG: cpe:CPE1877 probable glycerophosphodiester phosphodiesterase; glycerophosphoryl diester phosphodiesterase-like protein 3778169 4280058 Sfri_3156 Shewanella frigidimarina NCIMB 400 glycerophosphoryl diester phosphodiesterase-like protein YP_751831.1 3776712 D 318167 CDS YP_751832.1 114564318 4280059 3778220..3780682 1 NC_008345.1 hypothetical protein 3780682 4280059 Sfri_3157 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751832.1 3778220 D 318167 CDS YP_751833.1 114564319 4280060 3780786..3782678 1 NC_008345.1 KEGG: cfa:484672 similar to fls485; hypothetical protein 3782678 4280060 Sfri_3158 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751833.1 3780786 D 318167 CDS YP_751834.1 114564320 4280061 3782848..3783543 1 NC_008345.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: son:SO0774 5-formyltetrahydrofolate cyclo-ligase family protein; 5-formyltetrahydrofolate cyclo-ligase 3783543 4280061 Sfri_3159 Shewanella frigidimarina NCIMB 400 5-formyltetrahydrofolate cyclo-ligase YP_751834.1 3782848 D 318167 CDS YP_751835.1 114564321 4280062 complement(3783911..3785218) 1 NC_008345.1 KEGG: son:SO1095 O-acetylhomoserine (thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 3785218 4280062 Sfri_3160 Shewanella frigidimarina NCIMB 400 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_751835.1 3783911 R 318167 CDS YP_751836.1 114564322 4280063 complement(3785348..3786106) 1 NC_008345.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: son:SO0772 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 3786106 4280063 Sfri_3161 Shewanella frigidimarina NCIMB 400 short chain dehydrogenase YP_751836.1 3785348 R 318167 CDS YP_751837.1 114564323 4280064 complement(3786334..3787002) 1 NC_008345.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 3787002 folE 4280064 folE Shewanella frigidimarina NCIMB 400 GTP cyclohydrolase I YP_751837.1 3786334 R 318167 CDS YP_751838.1 114564324 4280065 complement(3787029..3787391) 1 NC_008345.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 3787391 folX 4280065 folX Shewanella frigidimarina NCIMB 400 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase YP_751838.1 3787029 R 318167 CDS YP_751839.1 114564325 4280066 3787581..3787970 1 NC_008345.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: son:SO0771 hypothetical protein; thiol-disulfide oxidoreductase 3787970 4280066 Sfri_3164 Shewanella frigidimarina NCIMB 400 thiol-disulfide oxidoreductase YP_751839.1 3787581 D 318167 CDS YP_751840.1 114564326 4280067 3787982..3788866 1 NC_008345.1 KEGG: cps:CPS_0516 oxidoreductase, short-chain dehydrogenase/reductase family; hypothetical protein 3788866 4280067 Sfri_3165 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751840.1 3787982 D 318167 CDS YP_751841.1 114564327 4280068 3789174..3789974 1 NC_008345.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cps:CPS_0943 D-beta-hydroxybutyrate dehydrogenase; short-chain dehydrogenase/reductase SDR 3789974 4280068 Sfri_3166 Shewanella frigidimarina NCIMB 400 short-chain dehydrogenase/reductase SDR YP_751841.1 3789174 D 318167 CDS YP_751842.1 114564328 4280069 complement(3790089..3791021) 1 NC_008345.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: cps:CPS_0941 putative lipase; alpha/beta hydrolase domain-containing protein 3791021 4280069 Sfri_3167 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase domain-containing protein YP_751842.1 3790089 R 318167 CDS YP_751843.1 114564329 4280070 complement(3791021..3792193) 1 NC_008345.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0940 major facilitator family transporter; major facilitator transporter 3792193 4280070 Sfri_3168 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_751843.1 3791021 R 318167 CDS YP_751844.1 114564330 4280071 3792362..3795868 1 NC_008345.1 TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cps:CPS_0939 sensory box sensor histidine kinase/response regulator; multi-sensor hybrid histidine kinase 3795868 4280071 Sfri_3169 Shewanella frigidimarina NCIMB 400 multi-sensor hybrid histidine kinase YP_751844.1 3792362 D 318167 CDS YP_751845.1 114564331 4280072 complement(3795996..3796679) 1 NC_008345.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: cps:CPS_0937 DNA-binding response regulator, LuxR family; two component transcriptional regulator, LuxR family protein 3796679 4280072 Sfri_3170 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, LuxR family protein YP_751845.1 3795996 R 318167 CDS YP_751846.1 114564332 4280073 complement(3796793..3799072) 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa2947 TonB-dependent receptor; TonB-dependent receptor 3799072 4280073 Sfri_3171 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor YP_751846.1 3796793 R 318167 CDS YP_751847.1 114564333 4280074 complement(3799290..3800192) 1 NC_008345.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: cps:CPS_0935 putative polyhydroxyalkanoate depolymerase; esterase, PHB depolymerase family protein 3800192 4280074 Sfri_3172 Shewanella frigidimarina NCIMB 400 esterase, PHB depolymerase family protein YP_751847.1 3799290 R 318167 CDS YP_751848.1 114564334 4280075 complement(3800557..3801492) 1 NC_008345.1 oxidizes malate to oxaloacetate; malate dehydrogenase 3801492 4280075 Sfri_3173 Shewanella frigidimarina NCIMB 400 malate dehydrogenase YP_751848.1 3800557 R 318167 CDS YP_751849.1 114564335 4280076 3802023..3802472 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0920 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3802472 4280076 Sfri_3174 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_751849.1 3802023 D 318167 CDS YP_751850.1 114564336 4280077 complement(3802590..3803378) 1 NC_008345.1 PFAM: ribonuclease H; KEGG: ppr:PBPRA1876 hypothetical ribonuclease HI; ribonuclease H 3803378 4280077 Sfri_3175 Shewanella frigidimarina NCIMB 400 ribonuclease H YP_751850.1 3802590 R 318167 CDS YP_751851.1 114564337 4280078 complement(3803553..3804356) 1 NC_008345.1 KEGG: son:SO0150 lipoprotein, putative; putative lipoprotein 3804356 4280078 Sfri_3176 Shewanella frigidimarina NCIMB 400 putative lipoprotein YP_751851.1 3803553 R 318167 CDS YP_751852.1 114564338 4280079 3804634..3805206 1 NC_008345.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 3805206 4280079 Sfri_3177 Shewanella frigidimarina NCIMB 400 NTPase YP_751852.1 3804634 D 318167 CDS YP_751853.1 114564339 4280080 3805199..3805720 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0916 putative acetyltransferase; N-acetyltransferase GCN5 3805720 4280080 Sfri_3178 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_751853.1 3805199 D 318167 CDS YP_751854.1 114564340 4280081 complement(3805792..3807747) 1 NC_008345.1 SMART: Ankyrin; ankyrin 3807747 4280081 Sfri_3179 Shewanella frigidimarina NCIMB 400 ankyrin YP_751854.1 3805792 R 318167 CDS YP_751855.1 114564341 4280082 3807928..3808968 1 NC_008345.1 PFAM: aldo/keto reductase; KEGG: son:SO0900 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 3808968 4280082 Sfri_3180 Shewanella frigidimarina NCIMB 400 aldo/keto reductase YP_751855.1 3807928 D 318167 CDS YP_751856.1 114564342 4280083 3809081..3810370 1 NC_008345.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; KEGG: son:SO3789 aminotransferase, class V; SufS subfamily cysteine desulfurase 3810370 4280083 Sfri_3181 Shewanella frigidimarina NCIMB 400 SufS subfamily cysteine desulfurase YP_751856.1 3809081 D 318167 CDS YP_751857.1 114564343 4280084 3810436..3810891 1 NC_008345.1 PFAM: Fe-S metabolism associated SufE; KEGG: son:SO3790 hypothetical protein; Fe-S metabolism associated SufE 3810891 4280084 Sfri_3182 Shewanella frigidimarina NCIMB 400 Fe-S metabolism associated SufE YP_751857.1 3810436 D 318167 CDS YP_751858.1 114564344 4280085 3810919..3812085 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase M19, renal dipeptidase; KEGG: son:SO3791 renal dipeptidase family protein; twin-arginine translocation pathway signal 3812085 4280085 Sfri_3183 Shewanella frigidimarina NCIMB 400 twin-arginine translocation pathway signal YP_751858.1 3810919 D 318167 CDS YP_751859.1 114564345 4280086 complement(3812235..3812858) 1 NC_008345.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 3812858 4280086 Sfri_3184 Shewanella frigidimarina NCIMB 400 adenylylsulfate kinase YP_751859.1 3812235 R 318167 CDS YP_751860.1 114564346 4280087 complement(3812904..3814628) 1 NC_008345.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vpa:VP0295 putative sodium/sulfate symporter; TrkA domain-containing protein 3814628 4280087 Sfri_3185 Shewanella frigidimarina NCIMB 400 TrkA domain-containing protein YP_751860.1 3812904 R 318167 CDS YP_751861.1 114564347 4280088 complement(3814632..3816074) 1 NC_008345.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 3816074 cysN 4280088 cysN Shewanella frigidimarina NCIMB 400 sulfate adenylyltransferase subunit 1 YP_751861.1 3814632 R 318167 CDS YP_751862.1 114564348 4280089 complement(3816135..3817043) 1 NC_008345.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 3817043 4280089 Sfri_3187 Shewanella frigidimarina NCIMB 400 sulfate adenylyltransferase subunit 2 YP_751862.1 3816135 R 318167 CDS YP_751863.1 114564349 4280090 complement(3817097..3817915) 1 NC_008345.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO3728 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 3817915 4280090 Sfri_3188 Shewanella frigidimarina NCIMB 400 uroporphyrin-III C-methyltransferase YP_751863.1 3817097 R 318167 CDS YP_751864.1 114564350 4280091 3818182..3819090 1 NC_008345.1 PFAM: phospholipase A1; KEGG: hch:HCH_01113 outer membrane phospholipase A; phospholipase A(1) 3819090 4280091 Sfri_3189 Shewanella frigidimarina NCIMB 400 phospholipase A(1) YP_751864.1 3818182 D 318167 CDS YP_751865.1 114564351 4280092 complement(3819254..3820978) 1 NC_008345.1 KEGG: son:SO3733 hypothetical protein; hypothetical protein 3820978 4280092 Sfri_3190 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751865.1 3819254 R 318167 CDS YP_751866.1 114564352 4280093 complement(3821859..3822650) 1 NC_008345.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 3822650 4280093 Sfri_3191 Shewanella frigidimarina NCIMB 400 phosphoadenosine phosphosulfate reductase YP_751866.1 3821859 R 318167 CDS YP_751867.1 114564353 4280094 complement(3822643..3824334) 1 NC_008345.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 3824334 4280094 Sfri_3192 Shewanella frigidimarina NCIMB 400 sulfite reductase subunit beta YP_751867.1 3822643 R 318167 CDS YP_751868.1 114564354 4280095 complement(3824413..3826203) 1 NC_008345.1 TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: son:SO3738 sulfite reductase (NADPH) flavoprotein alpha-component; sulfite reductase (NADPH) flavoprotein, alpha chain 3826203 4280095 Sfri_3193 Shewanella frigidimarina NCIMB 400 sulfite reductase (NADPH) flavoprotein, alpha chain YP_751868.1 3824413 R 318167 CDS YP_751869.1 114564355 4280096 3826670..3828199 1 NC_008345.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 3828199 pntA 4280096 pntA Shewanella frigidimarina NCIMB 400 NAD(P) transhydrogenase subunit alpha YP_751869.1 3826670 D 318167 CDS YP_751870.1 114564356 4280097 3828211..3829695 1 NC_008345.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 3829695 pntB 4280097 pntB Shewanella frigidimarina NCIMB 400 pyridine nucleotide transhydrogenase YP_751870.1 3828211 D 318167 CDS YP_751871.1 114564357 4280098 3829799..3830815 1 NC_008345.1 KEGG: chy:CHY_1906 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 3830815 4280098 Sfri_3196 Shewanella frigidimarina NCIMB 400 PAS/PAC sensor-containing diguanylate cyclase YP_751871.1 3829799 D 318167 CDS YP_751872.1 114564358 4280099 3831570..3832268 1 NC_008345.1 KEGG: son:SO4011 hypothetical protein; hypothetical protein 3832268 4280099 Sfri_3197 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751872.1 3831570 D 318167 CDS YP_751873.1 114564359 4280100 complement(3832492..3832968) 1 NC_008345.1 PFAM: regulatory protein, TetR; KEGG: son:SO3743 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein 3832968 4280100 Sfri_3198 Shewanella frigidimarina NCIMB 400 transcriptional regulator, TetR family protein YP_751873.1 3832492 R 318167 CDS YP_751874.1 114564360 4280101 complement(3833203..3834036) 1 NC_008345.1 KEGG: son:SO3744 hypothetical protein; hypothetical protein 3834036 4280101 Sfri_3199 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751874.1 3833203 R 318167 CDS YP_751875.1 114564361 4280102 complement(3834187..3835617) 1 NC_008345.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3835617 4280102 Sfri_3200 Shewanella frigidimarina NCIMB 400 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_751875.1 3834187 R 318167 CDS YP_751876.1 114564362 4280103 3835717..3836649 1 NC_008345.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: son:SO3746 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 3836649 4280103 Sfri_3201 Shewanella frigidimarina NCIMB 400 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_751876.1 3835717 D 318167 CDS YP_751877.1 114564363 4280104 complement(3836815..3837195) 1 NC_008345.1 hypothetical protein 3837195 4280104 Sfri_3202 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751877.1 3836815 R 318167 CDS YP_751878.1 114564364 4280105 complement(3837327..3837998) 1 NC_008345.1 PFAM: nitroreductase; KEGG: cps:CPS_3676 nitroreductase family protein; nitroreductase 3837998 4280105 Sfri_3203 Shewanella frigidimarina NCIMB 400 nitroreductase YP_751878.1 3837327 R 318167 CDS YP_751879.1 114564365 4280106 3838190..3838870 1 NC_008345.1 KEGG: bba:Bd1175 nucleoside-diphosphate-sugar epimerase; nucleoside-diphosphate-sugar epimerase 3838870 4280106 Sfri_3204 Shewanella frigidimarina NCIMB 400 nucleoside-diphosphate-sugar epimerase YP_751879.1 3838190 D 318167 CDS YP_751880.1 114564366 4280107 3838982..3839155 1 NC_008345.1 KEGG: son:SO3777 hypothetical protein; hypothetical protein 3839155 4280107 Sfri_3205 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751880.1 3838982 D 318167 CDS YP_751881.1 114564367 4280108 complement(3839332..3840549) 1 NC_008345.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 3840549 4280108 Sfri_3206 Shewanella frigidimarina NCIMB 400 Na(+)-translocating NADH-quinone reductase subunit F YP_751881.1 3839332 R 318167 CDS YP_751882.1 114564368 4280109 complement(3840574..3841182) 1 NC_008345.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 3841182 4280109 Sfri_3207 Shewanella frigidimarina NCIMB 400 Na(+)-translocating NADH-quinone reductase subunit E YP_751882.1 3840574 R 318167 CDS YP_751883.1 114564369 4280110 complement(3841192..3841812) 1 NC_008345.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 3841812 4280110 Sfri_3208 Shewanella frigidimarina NCIMB 400 Na(+)-translocating NADH-quinone reductase subunit D YP_751883.1 3841192 R 318167 CDS YP_751884.1 114564370 4280111 complement(3841813..3842580) 1 NC_008345.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 3842580 4280111 Sfri_3209 Shewanella frigidimarina NCIMB 400 Na(+)-translocating NADH-quinone reductase subunit C YP_751884.1 3841813 R 318167 CDS YP_751885.1 114564371 4280112 complement(3842570..3843784) 1 NC_008345.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 3843784 4280112 Sfri_3210 Shewanella frigidimarina NCIMB 400 Na(+)-translocating NADH-quinone reductase subunit B YP_751885.1 3842570 R 318167 CDS YP_751886.1 114564372 4280113 complement(3843784..3845163) 1 NC_008345.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 3845163 4280113 Sfri_3211 Shewanella frigidimarina NCIMB 400 Na(+)-translocating NADH-quinone reductase subunit A YP_751886.1 3843784 R 318167 CDS YP_751887.2 162139116 4280114 complement(3845509..3847212) 1 NC_008345.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 3847212 4280114 Sfri_3212 Shewanella frigidimarina NCIMB 400 cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_751887.2 3845509 R 318167 CDS YP_751888.1 114564374 4280115 complement(3847254..3849044) 1 NC_008345.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 3849044 4280115 Sfri_3213 Shewanella frigidimarina NCIMB 400 cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_751888.1 3847254 R 318167 CDS YP_751889.1 114564375 4280116 complement(3849366..3850424) 1 NC_008345.1 KEGG: son:SO3782 hypothetical protein; hypothetical protein 3850424 4280116 Sfri_3214 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751889.1 3849366 R 318167 CDS YP_751890.1 114564376 4280117 3850761..3852194 1 NC_008345.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO3783 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 3852194 4280117 Sfri_3215 Shewanella frigidimarina NCIMB 400 DEAD/DEAH box helicase YP_751890.1 3850761 D 318167 CDS YP_751891.1 114564377 4280118 complement(3852309..3853712) 1 NC_008345.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 3853712 4280118 Sfri_3216 Shewanella frigidimarina NCIMB 400 ATP-dependent RNA helicase DbpA YP_751891.1 3852309 R 318167 CDS YP_751892.1 114564378 4280119 complement(3854038..3854904) 1 NC_008345.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: son:SO0895 pirin family protein; pirin domain-containing protein 3854904 4280119 Sfri_3217 Shewanella frigidimarina NCIMB 400 pirin domain-containing protein YP_751892.1 3854038 R 318167 CDS YP_751893.1 114564379 4280120 3855126..3856022 1 NC_008345.1 KEGG: son:SO2446 hypothetical protein; hypothetical protein 3856022 4280120 Sfri_3218 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751893.1 3855126 D 318167 CDS YP_751894.1 114564380 4280121 complement(3856208..3857758) 1 NC_008345.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: vch:VCA0988 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3857758 4280121 Sfri_3219 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_751894.1 3856208 R 318167 CDS YP_751895.1 114564381 4280122 complement(3858219..3858701) 1 NC_008345.1 KEGG: vpa:VP0089 hypothetical protein; hypothetical protein 3858701 4280122 Sfri_3220 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751895.1 3858219 R 318167 CDS YP_751896.1 114564382 4280123 complement(3858726..3858974) 1 NC_008345.1 KEGG: vpa:VP0088 hypothetical protein; hypothetical protein 3858974 4280123 Sfri_3221 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751896.1 3858726 R 318167 CDS YP_751897.1 114564383 4280124 complement(3859382..3860971) 1 NC_008345.1 PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO0449 hypothetical protein; PepSY-associated TM helix domain-containing protein 3860971 4280124 Sfri_3222 Shewanella frigidimarina NCIMB 400 PepSY-associated TM helix domain-containing protein YP_751897.1 3859382 R 318167 CDS YP_751898.1 114564384 4280125 complement(3860968..3861270) 1 NC_008345.1 KEGG: son:SO0448 hypothetical protein; hypothetical protein 3861270 4280125 Sfri_3223 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751898.1 3860968 R 318167 CDS YP_751899.1 114564385 4280126 complement(3861267..3861539) 1 NC_008345.1 KEGG: son:SO0447 hypothetical protein; hypothetical protein 3861539 4280126 Sfri_3224 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751899.1 3861267 R 318167 CDS YP_751900.1 114564386 4280127 complement(3861727..3863874) 1 NC_008345.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bpa:BPP0079 ferric siderophore receptor; TonB-dependent siderophore receptor 3863874 4280127 Sfri_3225 Shewanella frigidimarina NCIMB 400 TonB-dependent siderophore receptor YP_751900.1 3861727 R 318167 CDS YP_751901.1 114564387 4280128 3864443..3864817 1 NC_008345.1 KEGG: son:SO1940 hypothetical protein; hypothetical protein 3864817 4280128 Sfri_3226 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751901.1 3864443 D 318167 CDS YP_751902.1 114564388 4280129 complement(3864994..3866073) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rru:Rru_A3391 putative diguanylate cyclase (GGDEF domain); diguanylate cyclase 3866073 4280129 Sfri_3227 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_751902.1 3864994 R 318167 CDS YP_751903.1 114564389 4280130 3866399..3866650 1 NC_008345.1 KEGG: ppr:PBPRA1285 hypothetical protein; hypothetical protein 3866650 4280130 Sfri_3228 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751903.1 3866399 D 318167 CDS YP_751904.1 114564390 4280131 complement(3866987..3867631) 1 NC_008345.1 KEGG: bca:BCE1051 hypothetical protein; hypothetical protein 3867631 4280131 Sfri_3229 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751904.1 3866987 R 318167 CDS YP_751905.1 114564391 4280132 complement(3868214..3869065) 1 NC_008345.1 KEGG: vvy:VVA0209 hypothetical protein; hypothetical protein 3869065 4280132 Sfri_3230 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751905.1 3868214 R 318167 CDS YP_751906.1 114564392 4280133 complement(3869706..3870476) 1 NC_008345.1 PFAM: ABC-2 type transporter; KEGG: son:SO3801 ABC transporter, permease protein; ABC-2 type transporter 3870476 4280133 Sfri_3231 Shewanella frigidimarina NCIMB 400 ABC-2 type transporter YP_751906.1 3869706 R 318167 CDS YP_751907.1 114564393 4280134 complement(3870476..3871411) 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3802 ABC transporter, ATP-binding protein; ABC transporter 3871411 4280134 Sfri_3232 Shewanella frigidimarina NCIMB 400 ABC transporter YP_751907.1 3870476 R 318167 CDS YP_751908.1 114564394 4280135 complement(3871562..3872092) 1 NC_008345.1 KEGG: son:SO3803 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 3872092 4280135 Sfri_3233 Shewanella frigidimarina NCIMB 400 hypoxanthine phosphoribosyltransferase YP_751908.1 3871562 R 318167 CDS YP_751909.1 114564395 4280136 complement(3872100..3872759) 1 NC_008345.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: son:SO3804 phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative; aromatic acid decarboxylase 3872759 4280136 Sfri_3234 Shewanella frigidimarina NCIMB 400 aromatic acid decarboxylase YP_751909.1 3872100 R 318167 CDS YP_751910.1 114564396 4280137 complement(3872786..3874225) 1 NC_008345.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO3805 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 3874225 4280137 Sfri_3235 Shewanella frigidimarina NCIMB 400 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_751910.1 3872786 R 318167 CDS YP_751911.1 114564397 4280138 complement(3874323..3874625) 1 NC_008345.1 PFAM: branched-chain amino acid transport; KEGG: son:SO1759 hypothetical protein; branched-chain amino acid transport 3874625 4280138 Sfri_3236 Shewanella frigidimarina NCIMB 400 branched-chain amino acid transport YP_751911.1 3874323 R 318167 CDS YP_751912.1 114564398 4280139 complement(3874622..3875482) 1 NC_008345.1 PFAM: AzlC family protein; KEGG: son:SO1760 AzlC family protein; AzlC family protein 3875482 4280139 Sfri_3237 Shewanella frigidimarina NCIMB 400 AzlC family protein YP_751912.1 3874622 R 318167 CDS YP_751913.1 114564399 4280140 complement(3875779..3876531) 1 NC_008345.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1065 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA; peptidylprolyl isomerase, FKBP-type 3876531 4280140 Sfri_3238 Shewanella frigidimarina NCIMB 400 peptidylprolyl isomerase, FKBP-type YP_751913.1 3875779 R 318167 CDS YP_751914.1 114564400 4280141 3876700..3877668 1 NC_008345.1 PFAM: WD-40 repeat protein; KEGG: son:SO1064 hypothetical WD domain protein; WD-40 repeat-containing protein 3877668 4280141 Sfri_3239 Shewanella frigidimarina NCIMB 400 WD-40 repeat-containing protein YP_751914.1 3876700 D 318167 CDS YP_751915.1 114564401 4280142 3877704..3877916 1 NC_008345.1 PFAM: SlyX family protein; KEGG: son:SO1063 SlyX protein; SlyX family protein 3877916 4280142 Sfri_3240 Shewanella frigidimarina NCIMB 400 SlyX family protein YP_751915.1 3877704 D 318167 CDS YP_751916.1 114564402 4280143 3878141..3878653 1 NC_008345.1 KEGG: son:SO1062 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 3878653 4280143 Sfri_3241 Shewanella frigidimarina NCIMB 400 peptide deformylase YP_751916.1 3878141 D 318167 CDS YP_751917.1 114564403 4280144 3878647..3880017 1 NC_008345.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO1061 TPR domain protein; TPR repeat-containing protein 3880017 4280144 Sfri_3242 Shewanella frigidimarina NCIMB 400 TPR repeat-containing protein YP_751917.1 3878647 D 318167 CDS YP_751918.1 114564404 4280145 3880055..3880660 1 NC_008345.1 KEGG: son:SO1060 hypothetical protein; hypothetical protein 3880660 4280145 Sfri_3243 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751918.1 3880055 D 318167 CDS YP_751919.1 114564405 4280146 3880737..3883400 1 NC_008345.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1059 aminopeptidase N; aminopeptidase N 3883400 4280146 Sfri_3244 Shewanella frigidimarina NCIMB 400 aminopeptidase N YP_751919.1 3880737 D 318167 CDS YP_751920.1 114564406 4280147 complement(3883559..3884692) 1 NC_008345.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: son:SO1148 hypothetical protein; endonuclease/exonuclease/phosphatase 3884692 4280147 Sfri_3245 Shewanella frigidimarina NCIMB 400 endonuclease/exonuclease/phosphatase YP_751920.1 3883559 R 318167 CDS YP_751921.1 114564407 4280148 3885036..3885641 1 NC_008345.1 KEGG: cps:CPS_0513 hypothetical protein; hypothetical protein 3885641 4280148 Sfri_3246 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751921.1 3885036 D 318167 CDS YP_751922.1 114564408 4280149 3885667..3886272 1 NC_008345.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: vvu:VV20013 predicted phosphatase; HAD family hydrolase 3886272 4280149 Sfri_3247 Shewanella frigidimarina NCIMB 400 HAD family hydrolase YP_751922.1 3885667 D 318167 CDS YP_751923.1 114564409 4280150 3886313..3886534 1 NC_008345.1 KEGG: vpa:VPA1560 hypothetical protein; hypothetical protein 3886534 4280150 Sfri_3248 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751923.1 3886313 D 318167 CDS YP_751924.1 114564410 4280151 complement(3886670..3887539) 1 NC_008345.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: cps:CPS_1747 hypothetical protein; Sel1 domain-containing protein 3887539 4280151 Sfri_3249 Shewanella frigidimarina NCIMB 400 Sel1 domain-containing protein YP_751924.1 3886670 R 318167 CDS YP_751925.1 114564411 4280152 complement(3887776..3888801) 1 NC_008345.1 KEGG: son:SO4050 hypothetical protein; hypothetical protein 3888801 4280152 Sfri_3250 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751925.1 3887776 R 318167 CDS YP_751926.1 114564412 4280153 complement(3888922..3889992) 1 NC_008345.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO4051 HlyD family secretion protein; secretion protein HlyD family protein 3889992 4280153 Sfri_3251 Shewanella frigidimarina NCIMB 400 secretion protein HlyD family protein YP_751926.1 3888922 R 318167 CDS YP_751927.1 114564413 4280154 complement(3889989..3890474) 1 NC_008345.1 PFAM: regulatory protein, MarR; KEGG: son:SO4052 transcriptional regulator, MarR family; transcriptional regulator, MarR family protein 3890474 4280154 Sfri_3252 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MarR family protein YP_751927.1 3889989 R 318167 CDS YP_751928.1 114564414 4280155 3890768..3893056 1 NC_008345.1 KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein; putative nitric oxide reductase (subunit B) transmembrane protein 3893056 4280155 Sfri_3253 Shewanella frigidimarina NCIMB 400 putative nitric oxide reductase (subunit B) transmembrane protein YP_751928.1 3890768 D 318167 CDS YP_751929.1 114564415 4280156 3893198..3894748 1 NC_008345.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 3894748 4280156 Sfri_3254 Shewanella frigidimarina NCIMB 400 anaerobic nitric oxide reductase transcriptional regulator YP_751929.1 3893198 D 318167 CDS YP_751930.1 114564416 4280157 3894913..3895830 1 NC_008345.1 PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: son:SO3748 LysM domain protein; ErfK/YbiS/YcfS/YnhG family protein 3895830 4280157 Sfri_3255 Shewanella frigidimarina NCIMB 400 ErfK/YbiS/YcfS/YnhG family protein YP_751930.1 3894913 D 318167 CDS YP_751931.1 114564417 4280158 complement(3895976..3896773) 1 NC_008345.1 PFAM: protein of unknown function DUF583; KEGG: son:SO1662 hypothetical Ccm2-related protein; hypothetical protein 3896773 4280158 Sfri_3256 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751931.1 3895976 R 318167 CDS YP_751932.1 114564418 4280159 3896876..3898093 1 NC_008345.1 PFAM: AFG1-family ATPase; KEGG: son:SO3756 hypothetical ATPase; AFG1 family ATPase 3898093 4280159 Sfri_3257 Shewanella frigidimarina NCIMB 400 AFG1 family ATPase YP_751932.1 3896876 D 318167 CDS YP_751933.1 114564419 4280160 complement(3898147..3898431) 1 NC_008345.1 KEGG: ilo:IL2440 hypothetical protein; hypothetical protein 3898431 4280160 Sfri_3258 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751933.1 3898147 R 318167 CDS YP_751934.1 114564420 4280161 3898659..3899612 1 NC_008345.1 PFAM: protein of unknown function DUF897; KEGG: son:SO3758 hypothetical protein; hypothetical protein 3899612 4280161 Sfri_3259 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751934.1 3898659 D 318167 CDS YP_751935.1 114564421 4280162 complement(3899835..3900818) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: son:SO3759 GGDEF domain protein; GAF sensor-containing diguanylate cyclase 3900818 4280162 Sfri_3260 Shewanella frigidimarina NCIMB 400 GAF sensor-containing diguanylate cyclase YP_751935.1 3899835 R 318167 CDS YP_751936.1 114564422 4280163 complement(3900905..3903754) 1 NC_008345.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3903754 4280163 Sfri_3261 Shewanella frigidimarina NCIMB 400 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_751936.1 3900905 R 318167 CDS YP_751937.1 114564423 4280164 3903918..3904880 1 NC_008345.1 KEGG: son:SO3761 hypothetical protein; hypothetical protein 3904880 4280164 Sfri_3262 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751937.1 3903918 D 318167 CDS YP_751938.1 114564424 4280165 3904894..3905793 1 NC_008345.1 PFAM: protein of unknown function DUF350; KEGG: son:SO3762 hypothetical protein; hypothetical protein 3905793 4280165 Sfri_3263 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751938.1 3904894 D 318167 CDS YP_751939.1 114564425 4280166 3905797..3907557 1 NC_008345.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 3907557 4280166 Sfri_3264 Shewanella frigidimarina NCIMB 400 spermidine synthase YP_751939.1 3905797 D 318167 CDS YP_751940.1 114564426 4280167 3907637..3908050 1 NC_008345.1 KEGG: son:SO3764 hypothetical protein; hypothetical protein 3908050 4280167 Sfri_3265 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751940.1 3907637 D 318167 CDS YP_751941.1 114564427 4280168 3908061..3908750 1 NC_008345.1 PFAM: PspA/IM30 family protein; KEGG: son:SO3765 hypothetical protein; phage shock protein A, PspA 3908750 4280168 Sfri_3266 Shewanella frigidimarina NCIMB 400 phage shock protein A, PspA YP_751941.1 3908061 D 318167 CDS YP_751942.1 114564428 4280169 3908757..3909410 1 NC_008345.1 KEGG: son:SO3766 hypothetical protein; hypothetical protein 3909410 4280169 Sfri_3267 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751942.1 3908757 D 318167 CDS YP_751943.1 114564429 4280170 3909434..3909769 1 NC_008345.1 KEGG: son:SO3767 hypothetical protein; hypothetical protein 3909769 4280170 Sfri_3268 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751943.1 3909434 D 318167 CDS YP_751944.1 114564430 4280171 3909899..3910708 1 NC_008345.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: son:SO3768 ion transporter; Ion transport 2 domain-containing protein 3910708 4280171 Sfri_3269 Shewanella frigidimarina NCIMB 400 Ion transport 2 domain-containing protein YP_751944.1 3909899 D 318167 CDS YP_751945.1 114564431 4280172 complement(3910920..3913220) 1 NC_008345.1 KEGG: son:SO0633 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; penicillin-binding protein 1B 3913220 4280172 Sfri_3270 Shewanella frigidimarina NCIMB 400 penicillin-binding protein 1B YP_751945.1 3910920 R 318167 CDS YP_751946.1 114564432 4280173 complement(3913289..3915835) 1 NC_008345.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent, C-terminal domain protein; KEGG: son:SO0632 ATP-dependent helicase HrpB; ATP-dependent helicase HrpB 3915835 4280173 Sfri_3271 Shewanella frigidimarina NCIMB 400 ATP-dependent helicase HrpB YP_751946.1 3913289 R 318167 CDS YP_751947.1 114564433 4280174 complement(3916025..3918286) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO0628 GGDEF domain protein; diguanylate cyclase/phosphodiesterase 3918286 4280174 Sfri_3272 Shewanella frigidimarina NCIMB 400 diguanylate cyclase/phosphodiesterase YP_751947.1 3916025 R 318167 CDS YP_751948.1 114564434 4280175 3918420..3919040 1 NC_008345.1 KEGG: son:SO0627 putative 2'-5' RNA ligase; putative 2'-5' RNA ligase 3919040 4280175 Sfri_3273 Shewanella frigidimarina NCIMB 400 putative 2'-5' RNA ligase YP_751948.1 3918420 D 318167 CDS YP_751949.1 114564435 4280176 complement(3919095..3920369) 1 NC_008345.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 3920369 4280176 Sfri_3274 Shewanella frigidimarina NCIMB 400 aminopeptidase B YP_751949.1 3919095 R 318167 CDS YP_751950.1 114564436 4280177 3920514..3921218 1 NC_008345.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 3921218 4280177 Sfri_3275 Shewanella frigidimarina NCIMB 400 sugar fermentation stimulation protein A YP_751950.1 3920514 D 318167 CDS YP_751951.1 114564437 4280178 3921337..3921780 1 NC_008345.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: son:SO0874 DnaK suppressor protein; transcriptional regulators, TraR/DksA family protein 3921780 4280178 Sfri_3276 Shewanella frigidimarina NCIMB 400 transcriptional regulators, TraR/DksA family protein YP_751951.1 3921337 D 318167 CDS YP_751952.1 114564438 4280179 3921921..3922802 1 NC_008345.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: son:SO0873 glutamyl-tRNA synthetase domain protein; glutamate--tRNA ligase 3922802 4280179 Sfri_3277 Shewanella frigidimarina NCIMB 400 glutamate--tRNA ligase YP_751952.1 3921921 D 318167 CDS YP_751953.1 114564439 4280180 3923284..3924345 1 NC_008345.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: son:SO0872 tRNA nucleotidyltransferase (CCA-adding enzyme); poly(A) polymerase 3924345 4280180 Sfri_3278 Shewanella frigidimarina NCIMB 400 poly(A) polymerase YP_751953.1 3923284 D 318167 CDS YP_751954.1 114564440 4280181 3924351..3924836 1 NC_008345.1 KEGG: son:SO0871 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3924836 4280181 Sfri_3279 Shewanella frigidimarina NCIMB 400 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_751954.1 3924351 D 318167 CDS YP_751955.1 114564441 4280182 3924905..3925699 1 NC_008345.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3925699 panB 4280182 panB Shewanella frigidimarina NCIMB 400 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_751955.1 3924905 D 318167 CDS YP_751956.1 114564442 4280183 3925941..3926795 1 NC_008345.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3926795 panC 4280183 panC Shewanella frigidimarina NCIMB 400 pantoate--beta-alanine ligase YP_751956.1 3925941 D 318167 CDS YP_751957.1 114564443 4280184 3927285..3927803 1 NC_008345.1 KEGG: son:SO0868 hypothetical protein; hypothetical protein 3927803 4280184 Sfri_3282 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751957.1 3927285 D 318167 CDS YP_751958.1 114564444 4280185 complement(3927841..3928038) 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO0886 hypothetical protein; hypothetical protein 3928038 4280185 Sfri_3283 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751958.1 3927841 R 318167 CDS YP_751959.1 114564445 4280186 3928215..3930125 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0885 ABC transporter, ATP-binding protein; ABC transporter 3930125 4280186 Sfri_3284 Shewanella frigidimarina NCIMB 400 ABC transporter YP_751959.1 3928215 D 318167 CDS YP_751960.1 114564446 4280187 3930198..3930689 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO0884 hypothetical protein; hypothetical protein 3930689 4280187 Sfri_3285 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751960.1 3930198 D 318167 CDS YP_751961.1 114564447 4280188 complement(3930762..3932351) 1 NC_008345.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: son:SO0882 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 3932351 4280188 Sfri_3286 Shewanella frigidimarina NCIMB 400 glucose-methanol-choline oxidoreductase YP_751961.1 3930762 R 318167 CDS YP_751962.1 114564448 4280189 complement(3932375..3932887) 1 NC_008345.1 KEGG: son:SO0881 hypothetical protein; hypothetical protein 3932887 4280189 Sfri_3287 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751962.1 3932375 R 318167 CDS YP_751963.1 114564449 4280190 3933000..3934016 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO0880 hypothetical protein; alpha/beta hydrolase 3934016 4280190 Sfri_3288 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase YP_751963.1 3933000 D 318167 CDS YP_751964.1 114564450 4280191 3934027..3934275 1 NC_008345.1 KEGG: son:SO0879 hypothetical protein; hypothetical protein 3934275 4280191 Sfri_3289 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751964.1 3934027 D 318167 CDS YP_751965.1 114564451 4280192 3934409..3935305 1 NC_008345.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: son:SO0878 phosphoribulokinase; phosphoribulokinase 3935305 4280192 Sfri_3290 Shewanella frigidimarina NCIMB 400 phosphoribulokinase YP_751965.1 3934409 D 318167 CDS YP_751966.1 114564452 4280193 complement(3935544..3936323) 1 NC_008345.1 PFAM: Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO0625 hypothetical protein; TPR repeat-containing protein 3936323 4280193 Sfri_3291 Shewanella frigidimarina NCIMB 400 TPR repeat-containing protein YP_751966.1 3935544 R 318167 CDS YP_751967.1 114564453 4280194 3936621..3937256 1 NC_008345.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3937256 4280194 Sfri_3292 Shewanella frigidimarina NCIMB 400 cAMP-regulatory protein YP_751967.1 3936621 D 318167 CDS YP_751968.1 114564454 4280195 3937388..3937738 1 NC_008345.1 KEGG: son:SO0623 hypothetical protein; hypothetical protein 3937738 4280195 Sfri_3293 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751968.1 3937388 D 318167 CDS YP_751969.1 114564455 4280196 3937719..3938393 1 NC_008345.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO0622 DNA-binding response regulator; two component transcriptional regulator, winged helix family protein 3938393 4280196 Sfri_3294 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, winged helix family protein YP_751969.1 3937719 D 318167 CDS YP_751970.1 114564456 4280197 3938390..3939724 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0621 sensor histidine kinase; sensor signal transduction histidine kinase 3939724 4280197 Sfri_3295 Shewanella frigidimarina NCIMB 400 sensor signal transduction histidine kinase YP_751970.1 3938390 D 318167 CDS YP_751971.1 114564457 4280198 complement(3939802..3940602) 1 NC_008345.1 KEGG: son:SO0620 hypothetical protein; hypothetical protein 3940602 4280198 Sfri_3296 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751971.1 3939802 R 318167 CDS YP_751972.1 114564458 4280199 complement(3940672..3942132) 1 NC_008345.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 3942132 astD 4280199 astD Shewanella frigidimarina NCIMB 400 succinylglutamic semialdehyde dehydrogenase YP_751972.1 3940672 R 318167 CDS YP_751973.2 228962556 4280200 complement(3942142..3943161) 1 NC_008345.1 PFAM: arginine N-succinyltransferase beta subunit; KEGG: son:SO0618 arginine N-succinyltransferase; arginine N-succinyltransferase 3943161 4280200 Sfri_3298 Shewanella frigidimarina NCIMB 400 arginine N-succinyltransferase YP_751973.2 3942142 R 318167 CDS YP_751974.1 114564460 4280201 complement(3943279..3944496) 1 NC_008345.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 3944496 argD 4280201 argD Shewanella frigidimarina NCIMB 400 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_751974.1 3943279 R 318167 CDS YP_751975.1 114564461 4280202 complement(3944832..3945974) 1 NC_008345.1 KEGG: son:SO0615 hypothetical protein; hypothetical protein 3945974 4280202 Sfri_3300 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751975.1 3944832 R 318167 CDS YP_751976.1 114564462 4280203 complement(3946077..3948566) 1 NC_008345.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: son:SO0614 dipeptidyl peptidase IV, putative; peptidase S9 prolyl oligopeptidase 3948566 4280203 Sfri_3301 Shewanella frigidimarina NCIMB 400 peptidase S9 prolyl oligopeptidase YP_751976.1 3946077 R 318167 CDS YP_751977.1 114564463 4280204 complement(3948695..3949264) 1 NC_008345.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: son:SO0613 para-aminobenzoate synthase glutamine amidotransferase, component II; glutamine amidotransferase of anthranilate synthase 3949264 4280204 Sfri_3302 Shewanella frigidimarina NCIMB 400 glutamine amidotransferase of anthranilate synthase YP_751977.1 3948695 R 318167 CDS YP_751978.1 114564464 4280205 complement(3949362..3949832) 1 NC_008345.1 PFAM: Stringent starvation protein B; KEGG: son:SO0612 stringent starvation protein b; ClpXP protease specificity-enhancing factor 3949832 4280205 Sfri_3303 Shewanella frigidimarina NCIMB 400 ClpXP protease specificity-enhancing factor YP_751978.1 3949362 R 318167 CDS YP_751979.1 114564465 4280206 complement(3949832..3950461) 1 NC_008345.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 3950461 sspA 4280206 sspA Shewanella frigidimarina NCIMB 400 stringent starvation protein A YP_751979.1 3949832 R 318167 CDS YP_751980.1 114564466 4280207 complement(3950557..3951291) 1 NC_008345.1 PFAM: cytochrome c1; KEGG: son:SO0610 ubiquinol-cytochrome c reductase cytochrome c1 subunit; cytochrome c1 3951291 4280207 Sfri_3305 Shewanella frigidimarina NCIMB 400 cytochrome c1 YP_751980.1 3950557 R 318167 CDS YP_751981.1 114564467 4280208 complement(3951291..3952505) 1 NC_008345.1 PFAM: Cytochrome b/b6, N-terminal domain protein; Cytochrome b/b6, C-terminal domain protein; KEGG: son:SO0609 ubiquinol-cytochrome c reductase, cytochrome b; cytochrome b/b6 domain-containing protein 3952505 4280208 Sfri_3306 Shewanella frigidimarina NCIMB 400 cytochrome b/b6 domain-containing protein YP_751981.1 3951291 R 318167 CDS YP_751982.1 114564468 4280209 complement(3952505..3953095) 1 NC_008345.1 KEGG: son:SO0608 ubiquinol-cytochrome c reductase iron-sulfur subunit; TIGRFAM: Twin-arginine translocation pathway signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 3953095 4280209 Sfri_3307 Shewanella frigidimarina NCIMB 400 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_751982.1 3952505 R 318167 CDS YP_751983.1 114564469 4280210 complement(3953509..3954387) 1 NC_008345.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: son:SO0606 hflC protein; HflC protein 3954387 4280210 Sfri_3308 Shewanella frigidimarina NCIMB 400 HflC protein YP_751983.1 3953509 R 318167 CDS YP_751984.1 114564470 4280211 complement(3954390..3955550) 1 NC_008345.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: son:SO0605 hflK protein; HflK protein 3955550 4280211 Sfri_3309 Shewanella frigidimarina NCIMB 400 HflK protein YP_751984.1 3954390 R 318167 CDS YP_751985.1 114564471 4280212 complement(3955584..3956891) 1 NC_008345.1 PFAM: GTP-binding protein, HSR1-related; KEGG: son:SO0604 GTP-binding protein HflX; HSR1-like GTP-binding protein 3956891 4280212 Sfri_3310 Shewanella frigidimarina NCIMB 400 HSR1-like GTP-binding protein YP_751985.1 3955584 R 318167 CDS YP_751986.1 114564472 4280213 complement(3956912..3957169) 1 NC_008345.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: son:SO0603 host factor-I protein; RNA chaperone Hfq 3957169 4280213 Sfri_3311 Shewanella frigidimarina NCIMB 400 RNA chaperone Hfq YP_751986.1 3956912 R 318167 CDS YP_751987.1 114564473 4280214 complement(3957252..3958142) 1 NC_008345.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 3958142 miaA 4280214 miaA Shewanella frigidimarina NCIMB 400 tRNA delta(2)-isopentenylpyrophosphate transferase YP_751987.1 3957252 R 318167 CDS YP_751988.1 114564474 4280215 complement(3958180..3960039) 1 NC_008345.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 3960039 mutL 4280215 mutL Shewanella frigidimarina NCIMB 400 DNA mismatch repair protein YP_751988.1 3958180 R 318167 CDS YP_751989.1 114564475 4280216 complement(3960041..3961384) 1 NC_008345.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: son:SO0600 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 3961384 4280216 Sfri_3314 Shewanella frigidimarina NCIMB 400 N-acetylmuramoyl-L-alanine amidase YP_751989.1 3960041 R 318167 CDS YP_751990.1 114564476 4280217 complement(3961392..3961850) 1 NC_008345.1 PFAM: protein of unknown function UPF0079; KEGG: son:SO0599 conserved hypothetical protein TIGR00150; hypothetical protein 3961850 4280217 Sfri_3315 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751990.1 3961392 R 318167 CDS YP_751991.1 114564477 4280218 complement(3962023..3962478) 1 NC_008345.1 KEGG: son:SO0595 hypothetical protein; hypothetical protein 3962478 4280218 Sfri_3316 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751991.1 3962023 R 318167 CDS YP_751992.1 114564478 4280219 complement(3963714..3964259) 1 NC_008345.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 3964259 4280219 Sfri_3317 Shewanella frigidimarina NCIMB 400 oligoribonuclease YP_751992.1 3963714 R 318167 CDS YP_751993.1 114564479 4280220 3964372..3965433 1 NC_008345.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 3965433 4280220 Sfri_3318 Shewanella frigidimarina NCIMB 400 ribosome-associated GTPase YP_751993.1 3964372 D 318167 CDS YP_751994.1 114564480 4280221 3965489..3966355 1 NC_008345.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 3966355 psd 4280221 psd Shewanella frigidimarina NCIMB 400 phosphatidylserine decarboxylase YP_751994.1 3965489 D 318167 CDS YP_751995.1 114564481 4280222 3966361..3967233 1 NC_008345.1 PFAM: protein of unknown function DUF6, transmembrane; UAA transporter; KEGG: cps:CPS_3514 membrane protein; hypothetical protein 3967233 4280222 Sfri_3320 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_751995.1 3966361 D 318167 CDS YP_751996.1 114564482 4280223 3967252..3970488 1 NC_008345.1 PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0588 transporter, putative; MscS mechanosensitive ion channel 3970488 4280223 Sfri_3321 Shewanella frigidimarina NCIMB 400 MscS mechanosensitive ion channel YP_751996.1 3967252 D 318167 CDS YP_751997.1 114564483 4280224 3970513..3971247 1 NC_008345.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: son:SO0587 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3971247 4280224 Sfri_3322 Shewanella frigidimarina NCIMB 400 glycerophosphoryl diester phosphodiesterase YP_751997.1 3970513 D 318167 CDS YP_751998.1 114564484 4280225 3971281..3972234 1 NC_008345.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO0585 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase 3972234 4280225 Sfri_3323 Shewanella frigidimarina NCIMB 400 D-isomer specific 2-hydroxyacid dehydrogenase YP_751998.1 3971281 D 318167 CDS YP_751999.1 114564485 4280226 3972589..3972780 1 NC_008345.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: son:SO0583 bacterioferritin-associated ferredoxin; BFD/(2Fe-2S)-binding domain-containing protein 3972780 4280226 Sfri_3324 Shewanella frigidimarina NCIMB 400 BFD/(2Fe-2S)-binding domain-containing protein YP_751999.1 3972589 D 318167 CDS YP_752000.1 114564486 4280227 complement(3972874..3975177) 1 NC_008345.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3975177 4280227 Sfri_3325 Shewanella frigidimarina NCIMB 400 DNA topoisomerase IV subunit A YP_752000.1 3972874 R 318167 CDS YP_752001.1 114564487 4280228 complement(3975170..3976354) 1 NC_008345.1 PFAM: glucose sorbosone dehydrogenase; KEGG: son:SO3898 L-sorbosone dehydrogenase, putative; glucose sorbosone dehydrogenase 3976354 4280228 Sfri_3326 Shewanella frigidimarina NCIMB 400 glucose sorbosone dehydrogenase YP_752001.1 3975170 R 318167 CDS YP_752002.1 114564488 4280229 complement(3976379..3978265) 1 NC_008345.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3978265 4280229 Sfri_3327 Shewanella frigidimarina NCIMB 400 DNA topoisomerase IV subunit B YP_752002.1 3976379 R 318167 CDS YP_752003.1 114564489 4280230 complement(3978336..3978908) 1 NC_008345.1 PFAM: protein of unknown function UPF0227; KEGG: son:SO3900 hypothetical protein; hypothetical protein 3978908 4280230 Sfri_3328 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752003.1 3978336 R 318167 CDS YP_752004.1 114564490 4280231 complement(3978973..3979812) 1 NC_008345.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; KEGG: son:SO3901 lacZ expression regulator; calcineurin phosphoesterase C-terminal domain-containing protein 3979812 4280231 Sfri_3329 Shewanella frigidimarina NCIMB 400 calcineurin phosphoesterase C-terminal domain-containing protein YP_752004.1 3978973 R 318167 CDS YP_752005.1 114564491 4280232 complement(3979848..3980285) 1 NC_008345.1 PFAM: protein of unknown function DUF1249; KEGG: son:SO3902 hypothetical protein; hypothetical protein 3980285 4280232 Sfri_3330 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752005.1 3979848 R 318167 CDS YP_752006.1 114564492 4280233 complement(3980325..3980951) 1 NC_008345.1 KEGG: son:SO3903 ADP-ribose pyrophosphatase; TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase; nucleoside diphosphate pyrophosphatase 3980951 4280233 Sfri_3331 Shewanella frigidimarina NCIMB 400 nucleoside diphosphate pyrophosphatase YP_752006.1 3980325 R 318167 CDS YP_752007.1 114564493 4280234 3981377..3982672 1 NC_008345.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3982672 tolC 4280234 tolC Shewanella frigidimarina NCIMB 400 outer membrane channel protein YP_752007.1 3981377 D 318167 CDS YP_752008.1 114564494 4280235 complement(3982797..3983531) 1 NC_008345.1 KEGG: son:SO3905 hypothetical protein; hypothetical protein 3983531 4280235 Sfri_3333 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752008.1 3982797 R 318167 CDS YP_752009.1 114564495 4280236 complement(3983534..3984505) 1 NC_008345.1 KEGG: son:SO3906 hypothetical protein; hypothetical protein 3984505 4280236 Sfri_3334 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752009.1 3983534 R 318167 CDS YP_752010.1 114564496 4280237 complement(3984518..3985006) 1 NC_008345.1 PFAM: protein of unknown function DUF461; KEGG: son:SO3907 hypothetical protein; hypothetical protein 3985006 4280237 Sfri_3335 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752010.1 3984518 R 318167 CDS YP_752011.1 114564497 4280238 3985042..3985779 1 NC_008345.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO3908 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 3985779 4280238 Sfri_3336 Shewanella frigidimarina NCIMB 400 enoyl-CoA hydratase/isomerase YP_752011.1 3985042 D 318167 CDS YP_752012.1 114564498 4280239 complement(3985850..3986050) 1 NC_008345.1 KEGG: son:SO3909 hypothetical protein; hypothetical protein 3986050 4280239 Sfri_3337 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752012.1 3985850 R 318167 CDS YP_752013.1 114564499 4280240 complement(3986232..3986537) 1 NC_008345.1 KEGG: son:SO3910 hypothetical protein; hypothetical protein 3986537 4280240 Sfri_3338 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752013.1 3986232 R 318167 CDS YP_752014.1 114564500 4280241 3987098..3987493 1 NC_008345.1 KEGG: dde:Dde_2987 transposase; transposase 3987493 4280241 Sfri_3339 Shewanella frigidimarina NCIMB 400 transposase YP_752014.1 3987098 D 318167 CDS YP_752015.1 114564501 4280242 3987598..3988326 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: par:Psyc_0937 putative transposase OrfB; integrase catalytic subunit 3988326 4280242 Sfri_3340 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_752015.1 3987598 D 318167 CDS YP_752016.1 114564502 4280243 complement(3988537..3989586) 1 NC_008345.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: son:SO3912 TIM-barrel protein, yjbN family; tRNA-dihydrouridine synthase A 3989586 4280243 Sfri_3341 Shewanella frigidimarina NCIMB 400 tRNA-dihydrouridine synthase A YP_752016.1 3988537 R 318167 CDS YP_752017.1 114564503 4280244 complement(3990055..3990576) 1 NC_008345.1 KEGG: son:SO0147 hypothetical protein; hypothetical protein 3990576 4280244 Sfri_3342 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752017.1 3990055 R 318167 CDS YP_752018.1 114564504 4280245 complement(3990824..3991219) 1 NC_008345.1 PFAM: Cupin 2, conserved barrel domain protein; cupin 3991219 4280245 Sfri_3343 Shewanella frigidimarina NCIMB 400 cupin YP_752018.1 3990824 R 318167 CDS YP_752019.1 114564505 4280246 3991917..3992384 1 NC_008345.1 PFAM: CheC domain protein; KEGG: son:SO3915 putative chemotaxis protein CheX; CheC domain-containing protein 3992384 4280246 Sfri_3344 Shewanella frigidimarina NCIMB 400 CheC domain-containing protein YP_752019.1 3991917 D 318167 CDS YP_752020.1 114564506 4280247 complement(3992551..3993669) 1 NC_008345.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 3993669 alr 4280247 alr Shewanella frigidimarina NCIMB 400 alanine racemase YP_752020.1 3992551 R 318167 CDS YP_752021.1 114564507 4280248 complement(3993816..3995222) 1 NC_008345.1 KEGG: son:SO3917 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; replicative DNA helicase 3995222 4280248 Sfri_3346 Shewanella frigidimarina NCIMB 400 replicative DNA helicase YP_752021.1 3993816 R 318167 CDS YP_752022.1 114564508 4280249 3995353..3998178 1 NC_008345.1 KEGG: son:SO3918 hypothetical protein; hypothetical protein 3998178 4280249 Sfri_3347 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752022.1 3995353 D 318167 CDS YP_752023.1 114564509 4280250 complement(3998364..3998816) 1 NC_008345.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3998816 rplI 4280250 rplI Shewanella frigidimarina NCIMB 400 50S ribosomal protein L9 YP_752023.1 3998364 R 318167 CDS YP_752024.1 114564510 4280251 complement(3998862..3999089) 1 NC_008345.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 3999089 rpsR 4280251 rpsR Shewanella frigidimarina NCIMB 400 30S ribosomal protein S18 YP_752024.1 3998862 R 318167 CDS YP_752025.1 114564511 4280252 complement(3999102..3999389) 1 NC_008345.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 3999389 4280252 Sfri_3350 Shewanella frigidimarina NCIMB 400 primosomal replication protein N YP_752025.1 3999102 R 318167 CDS YP_752026.1 114564512 4280253 complement(3999411..3999803) 1 NC_008345.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 3999803 rpsF 4280253 rpsF Shewanella frigidimarina NCIMB 400 30S ribosomal protein S6 YP_752026.1 3999411 R 318167 CDS YP_752027.1 114564513 4280254 4000020..4000772 1 NC_008345.1 PFAM: protein of unknown function DUF481; KEGG: son:SO3931 putative salt-induced outer membrane protein; hypothetical protein 4000772 4280254 Sfri_3352 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752027.1 4000020 D 318167 CDS YP_752028.1 114564514 4280255 4000854..4002278 1 NC_008345.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3933 hypothetical protein; major facilitator transporter 4002278 4280255 Sfri_3353 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_752028.1 4000854 D 318167 CDS YP_752029.1 114564515 4280256 complement(4002482..4003222) 1 NC_008345.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4003222 4280256 Sfri_3354 Shewanella frigidimarina NCIMB 400 23S rRNA (guanosine-2'-O-)-methyltransferase YP_752029.1 4002482 R 318167 CDS YP_752030.1 114564516 4280257 complement(4003227..4005716) 1 NC_008345.1 KEGG: son:SO3935 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain protein; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R 4005716 4280257 Sfri_3355 Shewanella frigidimarina NCIMB 400 ribonuclease R YP_752030.1 4003227 R 318167 CDS YP_752031.1 114564517 4280258 complement(4005754..4006395) 1 NC_008345.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO3936 sodium-type flagellar protein MotX; Sel1 domain-containing protein 4006395 4280258 Sfri_3356 Shewanella frigidimarina NCIMB 400 Sel1 domain-containing protein YP_752031.1 4005754 R 318167 CDS YP_752032.1 114564518 4280259 complement(4006494..4007789) 1 NC_008345.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 4007789 4280259 Sfri_3357 Shewanella frigidimarina NCIMB 400 adenylosuccinate synthetase YP_752032.1 4006494 R 318167 CDS YP_752033.1 114564519 4280260 complement(4007859..4008047) 1 NC_008345.1 KEGG: son:SO3938 hypothetical protein; hypothetical protein 4008047 4280260 Sfri_3358 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752033.1 4007859 R 318167 CDS YP_752034.1 114564520 4280261 complement(4008439..4008831) 1 NC_008345.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 4008831 rpsI 4280261 rpsI Shewanella frigidimarina NCIMB 400 30S ribosomal protein S9 YP_752034.1 4008439 R 318167 CDS YP_752035.1 114564521 4280262 complement(4008849..4009277) 1 NC_008345.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 4009277 rplM 4280262 rplM Shewanella frigidimarina NCIMB 400 50S ribosomal protein L13 YP_752035.1 4008849 R 318167 CDS YP_752036.1 114564522 4280263 complement(4009541..4010653) 1 NC_008345.1 PFAM: AFG1-family ATPase; KEGG: son:SO3941 hypothetical protein; AFG1 family ATPase 4010653 4280263 Sfri_3361 Shewanella frigidimarina NCIMB 400 AFG1 family ATPase YP_752036.1 4009541 R 318167 CDS YP_752037.1 114564523 4280264 4010976..4012325 1 NC_008345.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3942 serine protease, HtrA/DegQ/DegS family; protease Do 4012325 4280264 Sfri_3362 Shewanella frigidimarina NCIMB 400 protease Do YP_752037.1 4010976 D 318167 CDS YP_752038.1 114564524 4280265 4012481..4013560 1 NC_008345.1 TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3943 protease DegS; periplasmic serine protease DegS 4013560 4280265 Sfri_3363 Shewanella frigidimarina NCIMB 400 periplasmic serine protease DegS YP_752038.1 4012481 D 318167 CDS YP_752039.1 114564525 4280266 complement(4013670..4014929) 1 NC_008345.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 4014929 4280266 Sfri_3364 Shewanella frigidimarina NCIMB 400 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_752039.1 4013670 R 318167 CDS YP_752040.1 114564526 4280267 complement(4014945..4015196) 1 NC_008345.1 PFAM: BolA family protein; KEGG: son:SO3949 BolA/YrbA family protein; BolA family protein 4015196 4280267 Sfri_3365 Shewanella frigidimarina NCIMB 400 BolA family protein YP_752040.1 4014945 R 318167 CDS YP_752041.1 114564527 4280268 complement(4015201..4015524) 1 NC_008345.1 KEGG: son:SO3950 SpoIIAA family protein; SpoIIAA family protein 4015524 4280268 Sfri_3366 Shewanella frigidimarina NCIMB 400 SpoIIAA family protein YP_752041.1 4015201 R 318167 CDS YP_752042.1 114564528 4280269 complement(4015521..4016189) 1 NC_008345.1 PFAM: toluene tolerance family protein; KEGG: son:SO3951 hypothetical protein; toluene tolerance family protein 4016189 4280269 Sfri_3367 Shewanella frigidimarina NCIMB 400 toluene tolerance family protein YP_752042.1 4015521 R 318167 CDS YP_752043.1 114564529 4280270 complement(4016200..4016673) 1 NC_008345.1 PFAM: Mammalian cell entry related domain protein; KEGG: son:SO3952 mce-related protein; hypothetical protein 4016673 4280270 Sfri_3368 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752043.1 4016200 R 318167 CDS YP_752044.1 114564530 4280271 complement(4016715..4017500) 1 NC_008345.1 PFAM: protein of unknown function DUF140; KEGG: son:SO3953 putative membrane protein; hypothetical protein 4017500 4280271 Sfri_3369 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752044.1 4016715 R 318167 CDS YP_752045.1 114564531 4280272 complement(4017487..4018311) 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3954 ABC transporter, ATP-binding protein, putative; ABC transporter 4018311 4280272 Sfri_3370 Shewanella frigidimarina NCIMB 400 ABC transporter YP_752045.1 4017487 R 318167 CDS YP_752046.1 114564532 4280273 4018489..4019451 1 NC_008345.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: ppr:PBPRA3249 putative Ca2+/Na+ antiporter; Na+/Ca+ antiporter, CaCA family protein 4019451 4280273 Sfri_3371 Shewanella frigidimarina NCIMB 400 Na+/Ca+ antiporter, CaCA family protein YP_752046.1 4018489 D 318167 CDS YP_752047.1 114564533 4280274 4019496..4020473 1 NC_008345.1 KEGG: son:SO3956 carbohydrate isomerase, KpsF/GutQ family; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 4020473 4280274 Sfri_3372 Shewanella frigidimarina NCIMB 400 KpsF/GutQ family protein YP_752047.1 4019496 D 318167 CDS YP_752048.1 114564534 4280275 4020476..4021042 1 NC_008345.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4021042 4280275 Sfri_3373 Shewanella frigidimarina NCIMB 400 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_752048.1 4020476 D 318167 CDS YP_752049.1 114564535 4280276 4021039..4021599 1 NC_008345.1 PFAM: protein of unknown function DUF1239; KEGG: son:SO3958 hypothetical protein; hypothetical protein 4021599 4280276 Sfri_3374 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752049.1 4021039 D 318167 CDS YP_752050.1 114564536 4280277 4021586..4022167 1 NC_008345.1 PFAM: OstA family protein; KEGG: son:SO3959 hypothetical protein; OstA family protein 4022167 4280277 Sfri_3375 Shewanella frigidimarina NCIMB 400 OstA family protein YP_752050.1 4021586 D 318167 CDS YP_752051.1 114564537 4280278 4022164..4022895 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3960 ABC transporter, ATP-binding protein; ABC transporter 4022895 4280278 Sfri_3376 Shewanella frigidimarina NCIMB 400 ABC transporter YP_752051.1 4022164 D 318167 CDS YP_752052.1 114564538 4280279 4023038..4024522 1 NC_008345.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 4024522 4280279 Sfri_3377 Shewanella frigidimarina NCIMB 400 RNA polymerase factor sigma-54 YP_752052.1 4023038 D 318167 CDS YP_752053.1 114564539 4280280 4024548..4024835 1 NC_008345.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3962 ribosomal subunit interface protein; sigma 54 modulation protein/ribosomal protein S30EA 4024835 4280280 Sfri_3378 Shewanella frigidimarina NCIMB 400 sigma 54 modulation protein/ribosomal protein S30EA YP_752053.1 4024548 D 318167 CDS YP_752054.1 114564540 4280281 4024838..4025281 1 NC_008345.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: son:SO3963 nitrogen regulatory IIA protein; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 4025281 4280281 Sfri_3379 Shewanella frigidimarina NCIMB 400 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_752054.1 4024838 D 318167 CDS YP_752055.1 114564541 4280282 4025278..4026141 1 NC_008345.1 PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: son:SO3964 hypothetical protein; hypothetical protein 4026141 4280282 Sfri_3380 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752055.1 4025278 D 318167 CDS YP_752056.1 114564542 4280283 4026162..4026437 1 NC_008345.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: son:SO3965 phosphocarrier protein NPR; phosphocarrier, HPr family protein 4026437 4280283 Sfri_3381 Shewanella frigidimarina NCIMB 400 phosphocarrier, HPr family protein YP_752056.1 4026162 D 318167 CDS YP_752057.1 114564543 4280284 4026947..4028311 1 NC_008345.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO3966 magnesium transporter; magnesium transporter 4028311 4280284 Sfri_3382 Shewanella frigidimarina NCIMB 400 magnesium transporter YP_752057.1 4026947 D 318167 CDS YP_752058.1 114564544 4280285 4029002..4029253 1 NC_008345.1 KEGG: son:SO3972 hypothetical transposase; putative transposase 4029253 4280285 Sfri_3383 Shewanella frigidimarina NCIMB 400 putative transposase YP_752058.1 4029002 D 318167 CDS YP_752059.1 114564545 4280286 complement(4029981..4032470) 1 NC_008345.1 KEGG: cvi:CV1620 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 4032470 4280286 Sfri_3384 Shewanella frigidimarina NCIMB 400 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_752059.1 4029981 R 318167 CDS YP_752060.1 114564546 4280287 4032888..4033538 1 NC_008345.1 KEGG: vch:VC1349 sensory box sensor histidine kinase/response regulator; hypothetical protein 4033538 4280287 Sfri_3385 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752060.1 4032888 D 318167 CDS YP_752061.1 114564547 4280288 4033767..4034762 1 NC_008345.1 KEGG: vch:VC1369 hypothetical protein; hypothetical protein 4034762 4280288 Sfri_3386 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752061.1 4033767 D 318167 CDS YP_752062.1 114564548 4280289 4034766..4036094 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: vch:VC1370 GGDEF family protein; diguanylate cyclase 4036094 4280289 Sfri_3387 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_752062.1 4034766 D 318167 CDS YP_752063.1 114564549 4280290 complement(4036064..4036630) 1 NC_008345.1 KEGG: son:SO0508 hypothetical protein; hypothetical protein 4036630 4280290 Sfri_3388 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752063.1 4036064 R 318167 CDS YP_752064.1 114564550 4280291 4037113..4038594 1 NC_008345.1 TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: son:SO0506 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; UbiD family decarboxylase 4038594 4280291 Sfri_3389 Shewanella frigidimarina NCIMB 400 UbiD family decarboxylase YP_752064.1 4037113 D 318167 CDS YP_752065.1 114564551 4280292 4038676..4039374 1 NC_008345.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 4039374 fre 4280292 fre Shewanella frigidimarina NCIMB 400 FMN reductase YP_752065.1 4038676 D 318167 CDS YP_752066.1 114564552 4280293 4039650..4040204 1 NC_008345.1 KEGG: sai:Saci_1672 conserved crenarchaeal protein; hypothetical protein 4040204 4280293 Sfri_3391 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752066.1 4039650 D 318167 CDS YP_752067.1 114564553 4280294 4040204..4040944 1 NC_008345.1 PFAM: deoxyUTP pyrophosphatase; dUTP pyrophosphatase 4040944 4280294 Sfri_3392 Shewanella frigidimarina NCIMB 400 dUTP pyrophosphatase YP_752067.1 4040204 D 318167 CDS YP_752068.1 114564554 4280295 4040999..4041532 1 NC_008345.1 KEGG: cgb:cg3155 deoxycytidine triphosphate deaminase; deoxycytidine deaminase-like protein 4041532 4280295 Sfri_3393 Shewanella frigidimarina NCIMB 400 deoxycytidine deaminase-like protein YP_752068.1 4040999 D 318167 CDS YP_752069.1 114564555 4280296 complement(4041636..4042661) 1 NC_008345.1 hypothetical protein 4042661 4280296 Sfri_3394 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752069.1 4041636 R 318167 CDS YP_752070.1 114564556 4280297 complement(4042812..4043729) 1 NC_008345.1 KEGG: ilo:IL2088 predicted hydrolase of the alpha/beta superfamily; alpha/beta fold family hydrolase 4043729 4280297 Sfri_3395 Shewanella frigidimarina NCIMB 400 alpha/beta fold family hydrolase YP_752070.1 4042812 R 318167 CDS YP_752071.1 114564557 4280298 complement(4043763..4044623) 1 NC_008345.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 4044623 ubiA 4280298 ubiA Shewanella frigidimarina NCIMB 400 4-hydroxybenzoate octaprenyltransferase YP_752071.1 4043763 R 318167 CDS YP_752072.1 114564558 4280299 complement(4044661..4046844) 1 NC_008345.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4046844 uvrD 4280299 uvrD Shewanella frigidimarina NCIMB 400 DNA-dependent helicase II YP_752072.1 4044661 R 318167 CDS YP_752073.1 114564559 4280300 4047278..4048156 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VPA0365 putative transcriptional regulator protein; transcriptional regulator, LysR family protein 4048156 4280300 Sfri_3398 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_752073.1 4047278 D 318167 CDS YP_752074.1 114564560 4280301 complement(4048327..4049265) 1 NC_008345.1 PFAM: band 7 protein; KEGG: son:SO4128 SPFH domain/Band 7 family protein; hypothetical protein 4049265 4280301 Sfri_3399 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752074.1 4048327 R 318167 CDS YP_752075.1 114564561 4280302 complement(4049265..4050194) 1 NC_008345.1 PFAM: band 7 protein; KEGG: son:SO4129 SPFH domain/Band 7 family protein; hypothetical protein 4050194 4280302 Sfri_3400 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752075.1 4049265 R 318167 CDS YP_752076.1 114564562 4280303 complement(4050408..4050869) 1 NC_008345.1 PFAM: protein of unknown function DUF107; KEGG: son:SO4130 hypothetical protein; hypothetical protein 4050869 4280303 Sfri_3401 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752076.1 4050408 R 318167 CDS YP_752077.1 114564563 4280304 4051361..4052113 1 NC_008345.1 KEGG: son:SO4131 hypothetical protein; hypothetical protein 4052113 4280304 Sfri_3402 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752077.1 4051361 D 318167 CDS YP_752078.1 114564564 4280305 complement(4052300..4053058) 1 NC_008345.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4053058 4280305 Sfri_3403 Shewanella frigidimarina NCIMB 400 uridine phosphorylase YP_752078.1 4052300 R 318167 CDS YP_752079.1 114564565 4280306 4053500..4053721 1 NC_008345.1 KEGG: son:SO4134 hypothetical protein; hypothetical protein 4053721 4280306 Sfri_3404 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752079.1 4053500 D 318167 CDS YP_752080.1 114564566 4280307 complement(4053784..4054959) 1 NC_008345.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: son:SO4136 decarboxylase, pyridoxal-dependent; diaminopimelate decarboxylase 4054959 4280307 Sfri_3405 Shewanella frigidimarina NCIMB 400 diaminopimelate decarboxylase YP_752080.1 4053784 R 318167 CDS YP_752081.1 114564567 4280308 4055318..4056151 1 NC_008345.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa0714 mechanosensitive channel protein; MscS mechanosensitive ion channel 4056151 4280308 Sfri_3406 Shewanella frigidimarina NCIMB 400 MscS mechanosensitive ion channel YP_752081.1 4055318 D 318167 CDS YP_752082.1 114564568 4280309 4056706..4057980 1 NC_008345.1 TIGRFAM: ribokinase; PFAM: regulatory protein, DeoR; PfkB domain protein; Helix-turn-helix, type 11 domain protein; Phosphomethylpyrimidine kinase type-1; KEGG: ecc:c2492 putative carbohydrate kinase; ribokinase 4057980 4280309 Sfri_3407 Shewanella frigidimarina NCIMB 400 ribokinase YP_752082.1 4056706 D 318167 CDS YP_752083.1 114564569 4280310 complement(4058118..4059092) 1 NC_008345.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ppr:PBPRB1417 hypothetical inosine-uridine preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase 4059092 4280310 Sfri_3408 Shewanella frigidimarina NCIMB 400 inosine/uridine-preferring nucleoside hydrolase YP_752083.1 4058118 R 318167 CDS YP_752084.1 114564570 4280311 4059691..4060107 1 NC_008345.1 KEGG: cps:CPS_1160 hypothetical protein; hypothetical protein 4060107 4280311 Sfri_3409 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752084.1 4059691 D 318167 CDS YP_752085.1 114564571 4280312 4060104..4060298 1 NC_008345.1 PFAM: helix-turn-helix domain protein; KEGG: cps:CPS_1159 DNA-binding protein; transcriptional regulator, XRE family protein 4060298 4280312 Sfri_3410 Shewanella frigidimarina NCIMB 400 transcriptional regulator, XRE family protein YP_752085.1 4060104 D 318167 CDS YP_752086.1 114564572 4280313 complement(4060381..4061154) 1 NC_008345.1 SMART: Elongator protein 3/MiaB/NifB; KEGG: son:SO0528 hypothetical protein; elongator protein 3/MiaB/NifB 4061154 4280313 Sfri_3411 Shewanella frigidimarina NCIMB 400 elongator protein 3/MiaB/NifB YP_752086.1 4060381 R 318167 CDS YP_752087.1 114564573 4280314 4061695..4063863 1 NC_008345.1 PFAM: SEC-C motif domain protein; NERD domain protein; KEGG: ppr:PBPRB1686 hypothetical SecA-related protein; NERD domain-containing protein 4063863 4280314 Sfri_3412 Shewanella frigidimarina NCIMB 400 NERD domain-containing protein YP_752087.1 4061695 D 318167 CDS YP_752088.1 114564574 4280315 4064082..4068119 1 NC_008345.1 KEGG: vfi:VFA0705 hypothetical protein; hypothetical protein 4068119 4280315 Sfri_3413 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752088.1 4064082 D 318167 CDS YP_752089.1 114564575 4280316 4068282..4069841 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: pha:PSHAa0416 transposase; integrase catalytic subunit 4069841 4280316 Sfri_3414 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_752089.1 4068282 D 318167 CDS YP_752090.1 114564576 4280317 4069870..4070628 1 NC_008345.1 PFAM: IstB domain protein ATP-binding protein; KEGG: pha:PSHAa0414 transposase; IstB ATP binding domain-containing protein 4070628 4280317 Sfri_3415 Shewanella frigidimarina NCIMB 400 IstB ATP binding domain-containing protein YP_752090.1 4069870 D 318167 CDS YP_752091.1 114564577 4280318 4070675..4073164 1 NC_008345.1 KEGG: vfi:VFA0705 hypothetical protein; hypothetical protein 4073164 4280318 Sfri_3416 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752091.1 4070675 D 318167 CDS YP_752092.1 114564578 4280319 4073379..4073738 1 NC_008345.1 KEGG: vfi:VFA0704 hypothetical protein; hypothetical protein 4073738 4280319 Sfri_3417 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752092.1 4073379 D 318167 CDS YP_752093.1 114564579 4280320 complement(4074001..4075410) 1 NC_008345.1 PFAM: type III restriction enzyme, res subunit; KEGG: ppr:PBPRA1805 hypothetical protein; type III restriction enzyme, res subunit 4075410 4280320 Sfri_3418 Shewanella frigidimarina NCIMB 400 type III restriction enzyme, res subunit YP_752093.1 4074001 R 318167 CDS YP_752094.1 114564580 4280321 complement(4075416..4075952) 1 NC_008345.1 KEGG: ppr:PBPRA1806 hypothetical protein; hypothetical protein 4075952 4280321 Sfri_3419 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752094.1 4075416 R 318167 CDS YP_752095.1 114564581 4280322 4076084..4076290 1 NC_008345.1 PFAM: helix-turn-helix domain protein; KEGG: vvy:VV0142 predicted transcriptional regulator; transcriptional regulator, XRE family protein 4076290 4280322 Sfri_3420 Shewanella frigidimarina NCIMB 400 transcriptional regulator, XRE family protein YP_752095.1 4076084 D 318167 CDS YP_752096.1 114564582 4280323 complement(4076566..4076889) 1 NC_008345.1 hypothetical protein 4076889 4280323 Sfri_3421 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752096.1 4076566 R 318167 CDS YP_752097.1 114564583 4280324 complement(4077200..4077721) 1 NC_008345.1 KEGG: vfi:VFA1144 hypothetical cytosolic protein; hypothetical protein 4077721 4280324 Sfri_3423 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752097.1 4077200 R 318167 CDS YP_752098.1 114564584 4280325 complement(4078252..4078578) 1 NC_008345.1 PFAM: small multidrug resistance protein; KEGG: son:SOA0159 multidrug efflux transporter; small multidrug resistance protein 4078578 4280325 Sfri_3425 Shewanella frigidimarina NCIMB 400 small multidrug resistance protein YP_752098.1 4078252 R 318167 CDS YP_752099.1 114564585 4280326 complement(4078819..4079658) 1 NC_008345.1 PFAM: putative esterase; KEGG: son:SOA0160 esterase, putative; carboxylesterase 4079658 4280326 Sfri_3426 Shewanella frigidimarina NCIMB 400 carboxylesterase YP_752099.1 4078819 R 318167 CDS YP_752100.1 114564586 4280327 complement(4079745..4080875) 1 NC_008345.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SOA0161 zinc-binding dehydrogenase; alcohol dehydrogenase 4080875 4280327 Sfri_3427 Shewanella frigidimarina NCIMB 400 alcohol dehydrogenase YP_752100.1 4079745 R 318167 CDS YP_752101.1 114564587 4280328 complement(4081138..4081404) 1 NC_008345.1 PFAM: zinc finger, DksA/TraR C4-type; KEGG: pae:PA4870 hypothetical protein; hypothetical protein 4081404 4280328 Sfri_3428 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752101.1 4081138 R 318167 CDS YP_752102.1 114564588 4280329 complement(4082026..4082214) 1 NC_008345.1 KEGG: pst:PSPTO5035 glutathione synthetase; glutathione synthetase 4082214 4280329 Sfri_3429 Shewanella frigidimarina NCIMB 400 glutathione synthetase YP_752102.1 4082026 R 318167 CDS YP_752103.1 114564589 4280330 complement(4082268..4083860) 1 NC_008345.1 TIGRFAM: glutamate--cysteine ligase; KEGG: pfl:PFL_0273 glutamate--cysteine ligase; glutamate--cysteine ligase 4083860 4280330 Sfri_3430 Shewanella frigidimarina NCIMB 400 glutamate--cysteine ligase YP_752103.1 4082268 R 318167 CDS YP_752104.1 114564590 4280331 4084432..4085721 1 NC_008345.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vch:VC1890 NADH dehydrogenase; NADH dehydrogenase 4085721 4280331 Sfri_3431 Shewanella frigidimarina NCIMB 400 NADH dehydrogenase YP_752104.1 4084432 D 318167 CDS YP_752105.1 114564591 4280332 complement(4086657..4087145) 1 NC_008345.1 KEGG: hch:HCH_02210 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; hypothetical protein 4087145 4280332 Sfri_3432 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752105.1 4086657 R 318167 CDS YP_752106.1 114564592 4280333 complement(4087449..4088123) 1 NC_008345.1 PFAM: IstB domain protein ATP-binding protein; KEGG: pha:PSHAa0414 transposase; IstB ATP binding domain-containing protein 4088123 4280333 Sfri_3434 Shewanella frigidimarina NCIMB 400 IstB ATP binding domain-containing protein YP_752106.1 4087449 R 318167 CDS YP_752107.1 114564593 4280334 complement(4088544..4089152) 1 NC_008345.1 catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein 4089152 4280334 Sfri_3436 Shewanella frigidimarina NCIMB 400 glutathione-dependent formaldehyde-activating protein YP_752107.1 4088544 R 318167 CDS YP_752108.1 114564594 4280335 complement(4089258..4089665) 1 NC_008345.1 KEGG: ppr:PBPRB1571 hypothetical protein; hypothetical protein 4089665 4280335 Sfri_3437 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752108.1 4089258 R 318167 CDS YP_752109.1 114564595 4280336 complement(4089945..4090427) 1 NC_008345.1 catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein 4090427 4280336 Sfri_3438 Shewanella frigidimarina NCIMB 400 glutathione-dependent formaldehyde-activating protein YP_752109.1 4089945 R 318167 CDS YP_752110.1 114564596 4280337 complement(4090567..4091718) 1 NC_008345.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SOA0164 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 4091718 4280337 Sfri_3439 Shewanella frigidimarina NCIMB 400 iron-containing alcohol dehydrogenase YP_752110.1 4090567 R 318167 CDS YP_752111.1 114564597 4280338 4092056..4092925 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SOA0165 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 4092925 4280338 Sfri_3440 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_752111.1 4092056 D 318167 CDS YP_752112.1 114564598 4280339 complement(4093517..4093924) 1 NC_008345.1 KEGG: psp:PSPPH_1146 TetR family transcriptional regulator-like protein; TetR family transcriptional regulator-like protein 4093924 4280339 Sfri_3441 Shewanella frigidimarina NCIMB 400 TetR family transcriptional regulator-like protein YP_752112.1 4093517 R 318167 CDS YP_752113.1 114564599 4280340 complement(4093917..4095719) 1 NC_008345.1 PFAM: phage integrase family protein; KEGG: pst:PSPTO3615 site-specific recombinase, phage integrase family; phage integrase family protein 4095719 4280340 Sfri_3442 Shewanella frigidimarina NCIMB 400 phage integrase family protein YP_752113.1 4093917 R 318167 CDS YP_752114.1 114564600 4280341 complement(4095716..4097353) 1 NC_008345.1 KEGG: psp:PSPPH_1148 hypothetical protein; hypothetical protein 4097353 4280341 Sfri_3443 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752114.1 4095716 R 318167 CDS YP_752115.1 114564601 4280342 complement(4097362..4098495) 1 NC_008345.1 PFAM: phage integrase family protein; KEGG: psp:PSPPH_1149 site-specific recombinase, phage integrase family; phage integrase family protein 4098495 4280342 Sfri_3444 Shewanella frigidimarina NCIMB 400 phage integrase family protein YP_752115.1 4097362 R 318167 CDS YP_752116.1 114564602 4280343 complement(4099854..4100345) 1 NC_008345.1 PFAM: phage integrase family protein; KEGG: vvu:VV20655 integrase; phage integrase family protein 4100345 4280343 Sfri_3446 Shewanella frigidimarina NCIMB 400 phage integrase family protein YP_752116.1 4099854 R 318167 CDS YP_752117.1 114564603 4280344 4101371..4102543 1 NC_008345.1 PFAM: AAA-4 family protein; KEGG: tcx:Tcr_0336 hypothetical protein; putative transcriptional regulator 4102543 4280344 Sfri_3447 Shewanella frigidimarina NCIMB 400 putative transcriptional regulator YP_752117.1 4101371 D 318167 CDS YP_752118.1 114564604 4280345 complement(4102937..4103359) 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; KEGG: nmu:Nmul_A0917 hypothetical protein; hypothetical protein 4103359 4280345 Sfri_3448 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752118.1 4102937 R 318167 CDS YP_752119.1 114564605 4280346 complement(4103411..4103677) 1 NC_008345.1 KEGG: son:SOA0173 hypothetical protein; hypothetical protein 4103677 4280346 Sfri_3449 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752119.1 4103411 R 318167 CDS YP_752120.1 114564606 4280347 4103830..4104096 1 NC_008345.1 PFAM: transposase IS3/IS911 family protein; KEGG: son:SO4268 ISSod2, transposase OrfA; transposase IS3/IS911 family protein 4104096 4280347 Sfri_3450 Shewanella frigidimarina NCIMB 400 transposase IS3/IS911 family protein YP_752120.1 4103830 D 318167 CDS YP_752121.1 114564607 4280348 4104163..4104909 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: xcv:XCV1296 ISxac2 transposase; integrase catalytic subunit 4104909 4280348 Sfri_3451 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_752121.1 4104163 D 318167 CDS YP_752122.1 114564608 4280349 4104936..4105157 1 NC_008345.1 KEGG: son:SOA0013 umuD protein; umuD protein 4105157 4280349 Sfri_3452 Shewanella frigidimarina NCIMB 400 umuD protein YP_752122.1 4104936 D 318167 CDS YP_752123.1 114564609 4280350 4105158..4106414 1 NC_008345.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: son:SOA0012 umuC protein; DNA-directed DNA polymerase 4106414 4280350 Sfri_3453 Shewanella frigidimarina NCIMB 400 DNA-directed DNA polymerase YP_752123.1 4105158 D 318167 CDS YP_752124.1 114564610 4280351 4107415..4107771 1 NC_008345.1 hypothetical protein 4107771 4280351 Sfri_3454 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752124.1 4107415 D 318167 CDS YP_752125.1 114564611 4280352 4107847..4109196 1 NC_008345.1 PFAM: outer membrane efflux protein; KEGG: cps:CPS_1957 putative RND efflux system protein; outer membrane efflux protein 4109196 4280352 Sfri_3455 Shewanella frigidimarina NCIMB 400 outer membrane efflux protein YP_752125.1 4107847 D 318167 CDS YP_752126.1 114564612 4280353 4109193..4110119 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rpa:RPA2055 possible RND divalent metal cation efflux membrane fusion protein CzcB precursor; RND family efflux transporter MFP subunit 4110119 4280353 Sfri_3456 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_752126.1 4109193 D 318167 CDS YP_752127.1 114564613 4280354 4110210..4113326 1 NC_008345.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rpa:RPA2056 RND divalent metal cation efflux transporter CzcA; heavy metal efflux pump, CzcA family protein 4113326 4280354 Sfri_3457 Shewanella frigidimarina NCIMB 400 heavy metal efflux pump, CzcA family protein YP_752127.1 4110210 D 318167 CDS YP_752128.1 114564614 4280355 4113762..4114121 1 NC_008345.1 hypothetical protein 4114121 4280355 Sfri_3458 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752128.1 4113762 D 318167 CDS YP_752129.1 114564615 4280356 4114512..4114679 1 NC_008345.1 KEGG: vvy:VV0140 integrase; hypothetical protein 4114679 4280356 Sfri_3459 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752129.1 4114512 D 318167 CDS YP_752130.1 114564616 4280357 complement(4114890..4115498) 1 NC_008345.1 PFAM: Group II intron, maturase-specific domain protein; KEGG: plt:Plut_1820 RNA-directed DNA polymerase; maturase-specific domain-containing protein 4115498 4280357 Sfri_3460 Shewanella frigidimarina NCIMB 400 maturase-specific domain-containing protein YP_752130.1 4114890 R 318167 CDS YP_752131.1 114564617 4280358 complement(4115544..4115984) 1 NC_008345.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: pfl:PFL_5893 Cd(II)/Pb(II)-responsive transcriptional regulator; transcriptional regulator, MerR family protein 4115984 4280358 Sfri_3461 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MerR family protein YP_752131.1 4115544 R 318167 CDS YP_752132.1 114564618 4280359 4116070..4118475 1 NC_008345.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pfl:PFL_5892 cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase 4118475 4280359 Sfri_3462 Shewanella frigidimarina NCIMB 400 heavy metal translocating P-type ATPase YP_752132.1 4116070 D 318167 CDS YP_752133.1 114564619 4280360 4118472..4119551 1 NC_008345.1 TIGRFAM: lipoprotein signal peptidase; PFAM: phosphoesterase, PA-phosphatase related; peptidase A8, signal peptidase II; KEGG: ilo:IL0633 lipoprotein signal peptidase; lipoprotein signal peptidase 4119551 4280360 Sfri_3463 Shewanella frigidimarina NCIMB 400 lipoprotein signal peptidase YP_752133.1 4118472 D 318167 CDS YP_752134.1 114564620 4280361 4119681..4120238 1 NC_008345.1 PFAM: Resolvase, N-terminal domain protein; Resolvase helix-turn-helix domain protein; KEGG: sty:HCM1.168 resolvase; resolvase domain-containing protein 4120238 4280361 Sfri_3464 Shewanella frigidimarina NCIMB 400 resolvase domain-containing protein YP_752134.1 4119681 D 318167 CDS YP_752135.1 114564621 4280362 4120241..4121821 1 NC_008345.1 PFAM: transposase Tn3 family protein; KEGG: sec:SC008 transposase; transposase Tn3 family protein 4121821 4280362 Sfri_3465 Shewanella frigidimarina NCIMB 400 transposase Tn3 family protein YP_752135.1 4120241 D 318167 CDS YP_752136.1 114564622 4280363 4121926..4124904 1 NC_008345.1 PFAM: transposase Tn3 family protein; KEGG: reu:Reut_D6457 transposase Tn3; transposase Tn3 family protein 4124904 4280363 Sfri_3466 Shewanella frigidimarina NCIMB 400 transposase Tn3 family protein YP_752136.1 4121926 D 318167 CDS YP_752137.1 114564623 4280364 4125082..4125984 1 NC_008345.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pha:PSHAb0288 putative cation efflux protein; cation diffusion facilitator family transporter 4125984 4280364 Sfri_3467 Shewanella frigidimarina NCIMB 400 cation diffusion facilitator family transporter YP_752137.1 4125082 D 318167 CDS YP_752138.1 114564624 4280365 4125971..4126408 1 NC_008345.1 KEGG: tdn:Tmden_0321 PAP2 superfamily protein; PAP2 superfamily protein 4126408 4280365 Sfri_3468 Shewanella frigidimarina NCIMB 400 PAP2 superfamily protein YP_752138.1 4125971 D 318167 CDS YP_752139.1 114564625 4280366 4126523..4129174 1 NC_008345.1 PFAM: transposase Tn3 family protein; KEGG: reu:Reut_D6457 transposase Tn3; transposase Tn3 family protein 4129174 4280366 Sfri_3469 Shewanella frigidimarina NCIMB 400 transposase Tn3 family protein YP_752139.1 4126523 D 318167 CDS YP_752140.1 114564626 4280367 complement(4129062..4132148) 1 NC_008345.1 PFAM: transposase Tn3 family protein; KEGG: reu:Reut_D6457 transposase Tn3; transposase Tn3 family protein 4132148 4280367 Sfri_3470 Shewanella frigidimarina NCIMB 400 transposase Tn3 family protein YP_752140.1 4129062 R 318167 CDS YP_752141.1 114564627 4280368 complement(4132172..4132483) 1 NC_008345.1 PFAM: plasmid stabilization system; KEGG: son:SOA0088 plasmid stabilization protein ParE, putative; plasmid stabilization system protein 4132483 4280368 Sfri_3471 Shewanella frigidimarina NCIMB 400 plasmid stabilization system protein YP_752141.1 4132172 R 318167 CDS YP_752142.1 114564628 4280369 complement(4132483..4132743) 1 NC_008345.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: son:SOA0087 hypothetical protein; prevent-host-death family protein 4132743 4280369 Sfri_3472 Shewanella frigidimarina NCIMB 400 prevent-host-death family protein YP_752142.1 4132483 R 318167 CDS YP_752143.1 114564629 4280370 complement(4132936..4133895) 1 NC_008345.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pae:PA0397 probable cation efflux system protein; cation diffusion facilitator family transporter 4133895 4280370 Sfri_3473 Shewanella frigidimarina NCIMB 400 cation diffusion facilitator family transporter YP_752143.1 4132936 R 318167 CDS YP_752144.1 114564630 4280371 complement(4133915..4134481) 1 NC_008345.1 PFAM: Resolvase, N-terminal domain protein; Resolvase helix-turn-helix domain protein; KEGG: rru:Rru_B0010 resolvase; resolvase domain-containing protein 4134481 4280371 Sfri_3474 Shewanella frigidimarina NCIMB 400 resolvase domain-containing protein YP_752144.1 4133915 R 318167 CDS YP_752145.1 114564631 4280372 complement(4134489..4134794) 1 NC_008345.1 KEGG: bur:Bcep18194_A3305 hypothetical protein; hypothetical protein 4134794 4280372 Sfri_3475 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752145.1 4134489 R 318167 CDS YP_752146.1 114564632 4280373 4138049..4138639 1 NC_008345.1 PFAM: Resolvase, N-terminal domain protein; KEGG: son:SOA0086 site-specific recombinase, resolvase family; resolvase domain-containing protein 4138639 4280373 Sfri_3477 Shewanella frigidimarina NCIMB 400 resolvase domain-containing protein YP_752146.1 4138049 D 318167 CDS YP_752147.1 114564633 4280374 4138774..4140399 1 NC_008345.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: son:SO2048 membrane protein, putative; sulfatase 4140399 4280374 Sfri_3478 Shewanella frigidimarina NCIMB 400 sulfatase YP_752147.1 4138774 D 318167 CDS YP_752148.1 114564634 4280375 4140638..4141108 1 NC_008345.1 KEGG: xac:XAC2430 Tn5044 transposase; Tn5044 transposase 4141108 4280375 Sfri_3479 Shewanella frigidimarina NCIMB 400 Tn5044 transposase YP_752148.1 4140638 D 318167 CDS YP_752149.1 114564635 4280376 complement(4141564..4141971) 1 NC_008345.1 KEGG: psp:PSPPH_1146 TetR family transcriptional regulator-like protein; TetR family transcriptional regulator-like protein 4141971 4280376 Sfri_3480 Shewanella frigidimarina NCIMB 400 TetR family transcriptional regulator-like protein YP_752149.1 4141564 R 318167 CDS YP_752150.1 114564636 4280377 complement(4141964..4143766) 1 NC_008345.1 PFAM: phage integrase family protein; KEGG: pst:PSPTO3615 site-specific recombinase, phage integrase family; phage integrase family protein 4143766 4280377 Sfri_3481 Shewanella frigidimarina NCIMB 400 phage integrase family protein YP_752150.1 4141964 R 318167 CDS YP_752151.1 114564637 4280378 complement(4143763..4145400) 1 NC_008345.1 KEGG: psp:PSPPH_1148 hypothetical protein; hypothetical protein 4145400 4280378 Sfri_3482 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752151.1 4143763 R 318167 CDS YP_752152.1 114564638 4280379 complement(4145409..4146542) 1 NC_008345.1 PFAM: phage integrase family protein; KEGG: psp:PSPPH_1149 site-specific recombinase, phage integrase family; phage integrase family protein 4146542 4280379 Sfri_3483 Shewanella frigidimarina NCIMB 400 phage integrase family protein YP_752152.1 4145409 R 318167 CDS YP_752153.1 114564639 4280380 complement(4147787..4148218) 1 NC_008345.1 hypothetical protein 4148218 4280380 Sfri_3485 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752153.1 4147787 R 318167 CDS YP_752154.1 114564640 4280381 4149067..4150539 1 NC_008345.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: plt:Plut_1820 RNA-directed DNA polymerase; RNA-directed DNA polymerase 4150539 4280381 Sfri_3486 Shewanella frigidimarina NCIMB 400 RNA-directed DNA polymerase YP_752154.1 4149067 D 318167 CDS YP_752155.1 114564641 4280382 complement(4151239..4152897) 1 NC_008345.1 TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: tbd:Tbd_1341 mercuric reductase MerA; putative mercuric reductase 4152897 4280382 Sfri_3488 Shewanella frigidimarina NCIMB 400 putative mercuric reductase YP_752155.1 4151239 R 318167 CDS YP_752156.1 114564642 4280383 complement(4152932..4153351) 1 NC_008345.1 PFAM: MerC mercury resistance protein; KEGG: neu:NE0840 putative mercury transport protein; putative mercury transport protein MerC 4153351 4280383 Sfri_3489 Shewanella frigidimarina NCIMB 400 putative mercury transport protein MerC YP_752156.1 4152932 R 318167 CDS YP_752157.1 114564643 4280384 complement(4153362..4153649) 1 NC_008345.1 TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: ilo:IL1645 periplasmic mercuric ion binding protein, MerP; mercuric transport protein periplasmic component 4153649 4280384 Sfri_3490 Shewanella frigidimarina NCIMB 400 mercuric transport protein periplasmic component YP_752157.1 4153362 R 318167 CDS YP_752158.1 114564644 4280385 complement(4153736..4154083) 1 NC_008345.1 PFAM: Mercuric transport protein MerT; KEGG: sty:HCM1.234c putative mercuric transport protein; mercuric transporter MerT 4154083 4280385 Sfri_3491 Shewanella frigidimarina NCIMB 400 mercuric transporter MerT YP_752158.1 4153736 R 318167 CDS YP_752159.1 114564645 4280386 complement(4154174..4154581) 1 NC_008345.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: pol:Bpro_2232 transcriptional regulator, MerR family; transcriptional regulator, MerR family protein 4154581 4280386 Sfri_3492 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MerR family protein YP_752159.1 4154174 R 318167 CDS YP_752160.1 114564646 4280387 complement(4155116..4155754) 1 NC_008345.1 KEGG: cps:CPS_0186 hypothetical protein; hypothetical protein 4155754 4280387 Sfri_3493 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752160.1 4155116 R 318167 CDS YP_752161.1 114564647 4280388 complement(4155751..4159269) 1 NC_008345.1 PFAM: phage integrase family protein; KEGG: cps:CPS_0185 putative site-specific recombinase, phage integrase family; phage integrase family protein 4159269 4280388 Sfri_3494 Shewanella frigidimarina NCIMB 400 phage integrase family protein YP_752161.1 4155751 R 318167 CDS YP_752162.1 114564648 4280389 complement(4159262..4160719) 1 NC_008345.1 PFAM: phage integrase family protein; KEGG: cps:CPS_0184 site-specific recombinase, phage integrase family; phage integrase family protein 4160719 4280389 Sfri_3495 Shewanella frigidimarina NCIMB 400 phage integrase family protein YP_752162.1 4159262 R 318167 CDS YP_752163.1 114564649 4280390 complement(4160793..4160909) 1 NC_008345.1 KEGG: son:SO0528 hypothetical protein; hypothetical protein 4160909 4280390 Sfri_3496 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752163.1 4160793 R 318167 CDS YP_752164.1 114564650 4280391 4161065..4161322 1 NC_008345.1 hypothetical protein 4161322 4280391 Sfri_3497 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752164.1 4161065 D 318167 CDS YP_752165.1 114564651 4280392 complement(4161389..4162048) 1 NC_008345.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 4162048 4280392 Sfri_3498 Shewanella frigidimarina NCIMB 400 thiopurine S-methyltransferase YP_752165.1 4161389 R 318167 CDS YP_752166.1 114564652 4280393 complement(4162147..4162506) 1 NC_008345.1 KEGG: son:SO0581 hypothetical protein; hypothetical protein 4162506 4280393 Sfri_3499 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752166.1 4162147 R 318167 CDS YP_752167.1 114564653 4280394 4162787..4164619 1 NC_008345.1 PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: son:SO0579 serine/threonine protein kinase, putative; serine/threonine protein kinase 4164619 4280394 Sfri_3500 Shewanella frigidimarina NCIMB 400 serine/threonine protein kinase YP_752167.1 4162787 D 318167 CDS YP_752168.1 114564654 4280395 complement(4164731..4167127) 1 NC_008345.1 KEGG: son:SO0578 hypothetical protein; hypothetical protein 4167127 4280395 Sfri_3501 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752168.1 4164731 R 318167 CDS YP_752169.1 114564655 4280396 complement(4167167..4170877) 1 NC_008345.1 KEGG: son:SO0577 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Cache domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 4170877 4280396 Sfri_3502 Shewanella frigidimarina NCIMB 400 multi-sensor hybrid histidine kinase YP_752169.1 4167167 R 318167 CDS YP_752170.1 114564656 4280397 complement(4171139..4173403) 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_0977 TonB-dependent receptor; TonB-dependent receptor 4173403 4280397 Sfri_3503 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor YP_752170.1 4171139 R 318167 CDS YP_752171.1 114564657 4280398 4173620..4174642 1 NC_008345.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cps:CPS_0978 transcription regulator, LacI family; transcriptional regulator, LacI family protein 4174642 4280398 Sfri_3504 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LacI family protein YP_752171.1 4173620 D 318167 CDS YP_752172.1 114564658 4280399 4174754..4175992 1 NC_008345.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0981 hypothetical protein; major facilitator transporter 4175992 4280399 Sfri_3505 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_752172.1 4174754 D 318167 CDS YP_752173.1 114564659 4280400 4176009..4177547 1 NC_008345.1 PFAM: glycoside hydrolase, family 37; KEGG: cbu:CBU_1346 trehalase; Alpha,alpha-trehalase 4177547 4280400 Sfri_3506 Shewanella frigidimarina NCIMB 400 Alpha,alpha-trehalase YP_752173.1 4176009 D 318167 CDS YP_752174.1 114564660 4280401 complement(4177617..4179011) 1 NC_008345.1 PFAM: PhoH family protein; SMART: AAA ATPase; Nucleotide binding protein, PINc; KEGG: son:SO0576 PhoH family protein; PhoH family protein 4179011 4280401 Sfri_3507 Shewanella frigidimarina NCIMB 400 PhoH family protein YP_752174.1 4177617 R 318167 CDS YP_752175.1 114564661 4280402 4179335..4182241 1 NC_008345.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 4182241 4280402 Sfri_3508 Shewanella frigidimarina NCIMB 400 ATP-dependent helicase HepA YP_752175.1 4179335 D 318167 CDS YP_752176.1 114564662 4280403 4182290..4183246 1 NC_008345.1 KEGG: son:SO0573 hypothetical protein; hypothetical protein 4183246 4280403 Sfri_3509 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752176.1 4182290 D 318167 CDS YP_752177.1 114564663 4280404 complement(4183298..4184104) 1 NC_008345.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4184104 4280404 Sfri_3510 Shewanella frigidimarina NCIMB 400 enoyl-CoA hydratase YP_752177.1 4183298 R 318167 CDS YP_752178.1 114564664 4280405 4184547..4185542 1 NC_008345.1 PFAM: response regulator receiver; KEGG: son:SO0570 response regulator; CheC, inhibitor of MCP methylation 4185542 4280405 Sfri_3511 Shewanella frigidimarina NCIMB 400 CheC, inhibitor of MCP methylation YP_752178.1 4184547 D 318167 CDS YP_752179.1 114564665 4280406 4185558..4186514 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO0569 sensory box/GGDEF family protein; diguanylate cyclase 4186514 4280406 Sfri_3512 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_752179.1 4185558 D 318167 CDS YP_752180.1 114564666 4280407 complement(4186598..4187029) 1 NC_008345.1 PFAM: protein of unknown function DUF1260; KEGG: son:SO0568 hypothetical protein; hypothetical protein 4187029 4280407 Sfri_3513 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752180.1 4186598 R 318167 CDS YP_752181.1 114564667 4280408 complement(4187125..4187859) 1 NC_008345.1 KEGG: son:SO0567 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferases 4187859 4280408 Sfri_3514 Shewanella frigidimarina NCIMB 400 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_752181.1 4187125 R 318167 CDS YP_752182.1 114564668 4280409 complement(4188007..4188792) 1 NC_008345.1 PFAM: ABC-3 protein; KEGG: son:SO0566 ABC 3 transport family protein; ABC-3 protein 4188792 4280409 Sfri_3515 Shewanella frigidimarina NCIMB 400 ABC-3 protein YP_752182.1 4188007 R 318167 CDS YP_752183.1 114564669 4280410 complement(4188797..4189663) 1 NC_008345.1 PFAM: periplasmic solute binding protein; KEGG: son:SO0565 adhesion protein, putative; periplasmic solute binding protein 4189663 4280410 Sfri_3516 Shewanella frigidimarina NCIMB 400 periplasmic solute binding protein YP_752183.1 4188797 R 318167 CDS YP_752184.1 114564670 4280411 complement(4189686..4190879) 1 NC_008345.1 KEGG: son:SO0564 hypothetical protein; hypothetical protein 4190879 4280411 Sfri_3517 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752184.1 4189686 R 318167 CDS YP_752185.1 114564671 4280412 complement(4190967..4191257) 1 NC_008345.1 KEGG: son:SO1155 hypothetical protein; hypothetical protein 4191257 4280412 Sfri_3518 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752185.1 4190967 R 318167 CDS YP_752186.1 114564672 4280413 4191484..4191609 1 NC_008345.1 KEGG: son:SO0563 hypothetical protein; hypothetical protein 4191609 4280413 Sfri_3519 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752186.1 4191484 D 318167 CDS YP_752187.1 114564673 4280414 complement(4191615..4191944) 1 NC_008345.1 KEGG: son:SO0562 hypothetical protein; hypothetical protein 4191944 4280414 Sfri_3520 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752187.1 4191615 R 318167 CDS YP_752188.1 114564674 4280415 4192069..4193712 1 NC_008345.1 PFAM: MscS Mechanosensitive ion channel; KEGG: vfi:VFA1107 mechanosensitive ion channel; MscS mechanosensitive ion channel 4193712 4280415 Sfri_3521 Shewanella frigidimarina NCIMB 400 MscS mechanosensitive ion channel YP_752188.1 4192069 D 318167 CDS YP_752189.1 114564675 4280416 complement(4193794..4194660) 1 NC_008345.1 PFAM: MaoC domain protein dehydratase; KEGG: son:SO0559 MaoC domain protein; dehydratase 4194660 4280416 Sfri_3522 Shewanella frigidimarina NCIMB 400 dehydratase YP_752189.1 4193794 R 318167 CDS YP_752190.1 114564676 4280417 4194931..4195701 1 NC_008345.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0558 smtA protein; methyltransferase type 12 4195701 4280417 Sfri_3523 Shewanella frigidimarina NCIMB 400 methyltransferase type 12 YP_752190.1 4194931 D 318167 CDS YP_752191.1 114564677 4280418 complement(4195769..4196677) 1 NC_008345.1 PFAM: GumN family protein; KEGG: son:SO0557 hypothetical protein; GumN family protein 4196677 4280418 Sfri_3524 Shewanella frigidimarina NCIMB 400 GumN family protein YP_752191.1 4195769 R 318167 CDS YP_752192.1 114564678 4280419 4196730..4197038 1 NC_008345.1 KEGG: son:SO0556 hypothetical protein; hypothetical protein 4197038 4280419 Sfri_3525 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752192.1 4196730 D 318167 CDS YP_752193.1 114564679 4280420 4197456..4199201 1 NC_008345.1 PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: son:SO0555 hypothetical protein; diguanylate cyclase/phosphodiesterase 4199201 4280420 Sfri_3527 Shewanella frigidimarina NCIMB 400 diguanylate cyclase/phosphodiesterase YP_752193.1 4197456 D 318167 CDS YP_752194.1 114564680 4280421 complement(4199196..4199720) 1 NC_008345.1 KEGG: son:SO0554 hypothetical protein; hypothetical protein 4199720 4280421 Sfri_3528 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752194.1 4199196 R 318167 CDS YP_752195.1 114564681 4280422 complement(4199957..4200466) 1 NC_008345.1 KEGG: son:SO0551 hypothetical protein; hypothetical protein 4200466 4280422 Sfri_3529 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752195.1 4199957 R 318167 CDS YP_752196.1 114564682 4280423 4200524..4200931 1 NC_008345.1 KEGG: son:SO0550 hypothetical protein; hypothetical protein 4200931 4280423 Sfri_3530 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752196.1 4200524 D 318167 CDS YP_752197.1 114564683 4280424 4201054..4201851 1 NC_008345.1 PFAM: response regulator receiver; KEGG: son:SO0549 chemotaxis protein CheY/response regulator receiver domain protein; response regulator receiver protein 4201851 4280424 Sfri_3531 Shewanella frigidimarina NCIMB 400 response regulator receiver protein YP_752197.1 4201054 D 318167 CDS YP_752198.1 114564684 4280425 4202007..4202279 1 NC_008345.1 PFAM: histone family protein DNA-binding protein; KEGG: son:SO0548 DNA-binding protein, HU family; histone family protein DNA-binding protein 4202279 4280425 Sfri_3532 Shewanella frigidimarina NCIMB 400 histone family protein DNA-binding protein YP_752198.1 4202007 D 318167 CDS YP_752199.1 114564685 4280426 4202674..4203360 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO0547 hypothetical protein; hypothetical protein 4203360 4280426 Sfri_3533 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752199.1 4202674 D 318167 CDS YP_752200.1 114564686 4280427 4203680..4203856 1 NC_008345.1 KEGG: son:SO0543 hypothetical protein; hypothetical protein 4203856 4280427 Sfri_3534 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752200.1 4203680 D 318167 CDS YP_752201.1 114564687 4280428 complement(4203941..4204918) 1 NC_008345.1 KEGG: cjr:CJE1262 general glycosylation pathway protein; hypothetical protein 4204918 4280428 Sfri_3535 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752201.1 4203941 R 318167 CDS YP_752202.1 114564688 4280429 4205154..4206506 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1704; KEGG: son:SO0542 hypothetical protein; hypothetical protein 4206506 4280429 Sfri_3536 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752202.1 4205154 D 318167 CDS YP_752203.1 114564689 4280430 4206645..4207616 1 NC_008345.1 KEGG: ppr:PBPRA2313 hypothetical membrane protein; hypothetical protein 4207616 4280430 Sfri_3537 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752203.1 4206645 D 318167 CDS YP_752204.1 114564690 4280431 4207613..4208584 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRA2312 putative ABC-type multidrug transport system, ATPase component; ABC transporter 4208584 4280431 Sfri_3538 Shewanella frigidimarina NCIMB 400 ABC transporter YP_752204.1 4207613 D 318167 CDS YP_752205.1 114564691 4280432 4208596..4209705 1 NC_008345.1 PFAM: ABC-2 type transporter; KEGG: ppr:PBPRA2311 putative transmembrane protein; ABC-2 type transporter 4209705 4280432 Sfri_3539 Shewanella frigidimarina NCIMB 400 ABC-2 type transporter YP_752205.1 4208596 D 318167 CDS YP_752206.1 114564692 4280433 complement(4209750..4210148) 1 NC_008345.1 hypothetical protein 4210148 4280433 Sfri_3540 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752206.1 4209750 R 318167 CDS YP_752207.1 114564693 4280434 complement(4210259..4211632) 1 NC_008345.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: ppr:PBPRB1320 putative sodium/alanine symporter; amino acid carrier protein 4211632 4280434 Sfri_3541 Shewanella frigidimarina NCIMB 400 amino acid carrier protein YP_752207.1 4210259 R 318167 CDS YP_752208.1 114564694 4280435 complement(4211837..4212370) 1 NC_008345.1 KEGG: lic:LIC12691 hypothetical protein; hypothetical protein 4212370 4280435 Sfri_3542 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752208.1 4211837 R 318167 CDS YP_752209.1 114564695 4280436 complement(4212598..4212963) 1 NC_008345.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: ilo:IL0788 DSBH domain containing protein; cupin 4212963 4280436 Sfri_3543 Shewanella frigidimarina NCIMB 400 cupin YP_752209.1 4212598 R 318167 CDS YP_752210.1 114564696 4280437 complement(4213006..4213284) 1 NC_008345.1 KEGG: sdn:Sden_0645 hypothetical protein; hypothetical protein 4213284 4280437 Sfri_3544 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752210.1 4213006 R 318167 CDS YP_752211.1 114564697 4280438 complement(4213464..4214582) 1 NC_008345.1 KEGG: son:SO4047 cytochrome c family protein; cytochrome c family protein 4214582 4280438 Sfri_3545 Shewanella frigidimarina NCIMB 400 cytochrome c family protein YP_752211.1 4213464 R 318167 CDS YP_752212.1 114564698 4280439 complement(4214593..4215225) 1 NC_008345.1 KEGG: son:SO4048 cytochrome c family protein; cytochrome c family protein 4215225 4280439 Sfri_3546 Shewanella frigidimarina NCIMB 400 cytochrome c family protein YP_752212.1 4214593 R 318167 CDS YP_752213.1 114564699 4280440 complement(4215382..4216266) 1 NC_008345.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 4216266 metF 4280440 metF Shewanella frigidimarina NCIMB 400 5,10-methylenetetrahydrofolate reductase YP_752213.1 4215382 R 318167 CDS YP_752214.1 114564700 4280441 4216788..4217279 1 NC_008345.1 PFAM: protein of unknown function DUF1097; KEGG: son:SO3047 hypothetical protein; hypothetical protein 4217279 4280441 Sfri_3548 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752214.1 4216788 D 318167 CDS YP_752215.1 114564701 4280442 complement(4217431..4217679) 1 NC_008345.1 KEGG: cps:CPS_3145 hypothetical protein; hypothetical protein 4217679 4280442 Sfri_3549 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752215.1 4217431 R 318167 CDS YP_752216.1 114564702 4280443 complement(4217805..4220198) 1 NC_008345.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4220198 metL 4280443 metL Shewanella frigidimarina NCIMB 400 bifunctional aspartate kinase II/homoserine dehydrogenase II YP_752216.1 4217805 R 318167 CDS YP_752217.1 114564703 4280444 complement(4220330..4221499) 1 NC_008345.1 KEGG: son:SO4056 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-succinylhomoserine (thiol)-lyase 4221499 4280444 Sfri_3551 Shewanella frigidimarina NCIMB 400 O-succinylhomoserine (thiol)-lyase YP_752217.1 4220330 R 318167 CDS YP_752218.1 114564704 4280445 4221709..4222023 1 NC_008345.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4222023 4280445 Sfri_3552 Shewanella frigidimarina NCIMB 400 transcriptional repressor protein MetJ YP_752218.1 4221709 D 318167 CDS YP_752219.1 114564705 4280446 4222098..4222838 1 NC_008345.1 PFAM: protein of unknown function DUF81; KEGG: son:SO4058 hypothetical protein; hypothetical protein 4222838 4280446 Sfri_3553 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752219.1 4222098 D 318167 CDS YP_752220.1 114564706 4280447 4223195..4223524 1 NC_008345.1 KEGG: son:SO4142 cytochrome c family protein; cytochrome c family protein 4223524 4280447 Sfri_3554 Shewanella frigidimarina NCIMB 400 cytochrome c family protein YP_752220.1 4223195 D 318167 CDS YP_752221.1 114564707 4280448 4223673..4225385 1 NC_008345.1 KEGG: son:SO4143 hypothetical protein; hypothetical protein 4225385 4280448 Sfri_3555 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752221.1 4223673 D 318167 CDS YP_752222.1 114564708 4280449 4225448..4226842 1 NC_008345.1 KEGG: son:SO4144 cytochrome c, putative; cytochrome c, putative 4226842 4280449 Sfri_3556 Shewanella frigidimarina NCIMB 400 cytochrome c, putative YP_752222.1 4225448 D 318167 CDS YP_752223.1 114564709 4280450 complement(4226937..4227917) 1 NC_008345.1 PFAM: pseudouridine synthase; KEGG: rfr:Rfer_1895 pseudouridine synthase; pseudouridine synthase 4227917 4280450 Sfri_3557 Shewanella frigidimarina NCIMB 400 pseudouridine synthase YP_752223.1 4226937 R 318167 CDS YP_752224.1 114564710 4280451 complement(4228029..4228607) 1 NC_008345.1 SMART: peptidase S16, lon domain protein; KEGG: son:SO4182 ATP-dependent protease La (LON) domain protein, putative; peptidase S16, lon domain-containing protein 4228607 4280451 Sfri_3558 Shewanella frigidimarina NCIMB 400 peptidase S16, lon domain-containing protein YP_752224.1 4228029 R 318167 CDS YP_752225.1 114564711 4280452 complement(4228821..4229876) 1 NC_008345.1 KEGG: ilo:IL1449 alpha/beta superfamily hydrolase; alpha/beta fold family hydrolase 4229876 4280452 Sfri_3559 Shewanella frigidimarina NCIMB 400 alpha/beta fold family hydrolase YP_752225.1 4228821 R 318167 CDS YP_752226.1 114564712 4280453 4229982..4230443 1 NC_008345.1 PFAM: conserved hypothetical protein 22; KEGG: son:SO4189 hypothetical protein; hypothetical protein 4230443 4280453 Sfri_3560 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752226.1 4229982 D 318167 CDS YP_752227.1 114564713 4280454 4230824..4231747 1 NC_008345.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 4231747 4280454 Sfri_3561 Shewanella frigidimarina NCIMB 400 putative manganese-dependent inorganic pyrophosphatase YP_752227.1 4230824 D 318167 CDS YP_752228.1 114564714 4280455 complement(4231797..4232525) 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: par:Psyc_0937 putative transposase OrfB; integrase catalytic subunit 4232525 4280455 Sfri_3562 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_752228.1 4231797 R 318167 CDS YP_752229.1 114564715 4280456 complement(4232630..4233025) 1 NC_008345.1 KEGG: dde:Dde_2987 transposase; transposase 4233025 4280456 Sfri_3563 Shewanella frigidimarina NCIMB 400 transposase YP_752229.1 4232630 R 318167 CDS YP_752230.1 114564716 4280457 complement(4233139..4233543) 1 NC_008345.1 KEGG: son:SO0454 hypothetical protein; hypothetical protein 4233543 4280457 Sfri_3564 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752230.1 4233139 R 318167 CDS YP_752231.1 114564717 4280458 complement(4233543..4235594) 1 NC_008345.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO0455 hypothetical transporter; TRAP transporter, 4TM/12TM fusion protein 4235594 4280458 Sfri_3565 Shewanella frigidimarina NCIMB 400 TRAP transporter, 4TM/12TM fusion protein YP_752231.1 4233543 R 318167 CDS YP_752232.1 114564718 4280459 complement(4235780..4236733) 1 NC_008345.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: son:SO0456 immunogenic-related protein; TRAP transporter solute receptor, TAXI family protein 4236733 4280459 Sfri_3566 Shewanella frigidimarina NCIMB 400 TRAP transporter solute receptor, TAXI family protein YP_752232.1 4235780 R 318167 CDS YP_752233.1 114564719 4280460 complement(4237065..4238339) 1 NC_008345.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pha:PSHAa2187 hypothetical protein; glycerophosphoryl diester phosphodiesterase 4238339 4280460 Sfri_3567 Shewanella frigidimarina NCIMB 400 glycerophosphoryl diester phosphodiesterase YP_752233.1 4237065 R 318167 CDS YP_752234.1 114564720 4280461 4238576..4239217 1 NC_008345.1 KEGG: pha:PSHAb0519 hypothetical protein; hypothetical protein 4239217 4280461 Sfri_3568 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752234.1 4238576 D 318167 CDS YP_752235.1 114564721 4280462 4239396..4240076 1 NC_008345.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 4240076 mtgA 4280462 mtgA Shewanella frigidimarina NCIMB 400 monofunctional biosynthetic peptidoglycan transglycosylase YP_752235.1 4239396 D 318167 CDS YP_752236.1 114564722 4280463 4240308..4242284 1 NC_008345.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: eba:ebA5328 conserved hypothetical protein, predicted radical-SAM emzyme; radical SAM domain-containing protein 4242284 4280463 Sfri_3570 Shewanella frigidimarina NCIMB 400 radical SAM domain-containing protein YP_752236.1 4240308 D 318167 CDS YP_752237.1 114564723 4280464 4242503..4242937 1 NC_008345.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: ppr:PBPRB1018 putative deoxycytidylate deaminase; zinc-binding CMP/dCMP deaminase 4242937 4280464 Sfri_3571 Shewanella frigidimarina NCIMB 400 zinc-binding CMP/dCMP deaminase YP_752237.1 4242503 D 318167 CDS YP_752238.1 114564724 4280465 complement(4243124..4243534) 1 NC_008345.1 hypothetical protein 4243534 4280465 Sfri_3572 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752238.1 4243124 R 318167 CDS YP_752239.1 114564725 4280466 complement(4243726..4244271) 1 NC_008345.1 hypothetical protein 4244271 4280466 Sfri_3573 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752239.1 4243726 R 318167 CDS YP_752240.1 114564726 4280467 complement(4244714..4244995) 1 NC_008345.1 KEGG: noc:Noc_0526 hypothetical protein; hypothetical protein 4244995 4280467 Sfri_3574 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752240.1 4244714 R 318167 CDS YP_752241.1 114564727 4280468 complement(4245077..4245424) 1 NC_008345.1 hypothetical protein 4245424 4280468 Sfri_3575 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752241.1 4245077 R 318167 CDS YP_752242.1 114564728 4280469 4246303..4246884 1 NC_008345.1 KEGG: son:SO0090 hypothetical protein; hypothetical protein 4246884 4280469 Sfri_3576 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752242.1 4246303 D 318167 CDS YP_752243.1 114564729 4280470 4247424..4248398 1 NC_008345.1 KEGG: cps:CPS_1152 hypothetical protein; hypothetical protein 4248398 4280470 Sfri_3577 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752243.1 4247424 D 318167 CDS YP_752244.1 114564730 4280471 4248443..4249510 1 NC_008345.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4249510 4280471 Sfri_3578 Shewanella frigidimarina NCIMB 400 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_752244.1 4248443 D 318167 CDS YP_752245.1 114564731 4280472 complement(4249559..4250539) 1 NC_008345.1 KEGG: pca:Pcar_3022 probable integral membrane protein; putative integral membrane protein 4250539 4280472 Sfri_3579 Shewanella frigidimarina NCIMB 400 putative integral membrane protein YP_752245.1 4249559 R 318167 CDS YP_752246.1 114564732 4280473 complement(4250827..4253511) 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_3993 TonB-dependent receptor; TonB-dependent receptor, plug 4253511 4280473 Sfri_3580 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor, plug YP_752246.1 4250827 R 318167 CDS YP_752247.1 114564733 4280474 complement(4253596..4256430) 1 NC_008345.1 KEGG: cps:CPS_3994 putative lipoprotein; putative lipoprotein 4256430 4280474 Sfri_3581 Shewanella frigidimarina NCIMB 400 putative lipoprotein YP_752247.1 4253596 R 318167 CDS YP_752248.1 114564734 4280475 complement(4256648..4257022) 1 NC_008345.1 hypothetical protein 4257022 4280475 Sfri_3582 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752248.1 4256648 R 318167 CDS YP_752249.1 114564735 4280476 4257326..4258534 1 NC_008345.1 PFAM: sodium/hydrogen exchanger; KEGG: bfs:BF2202 putative Na+/H+ exchanger; sodium/hydrogen exchanger 4258534 4280476 Sfri_3583 Shewanella frigidimarina NCIMB 400 sodium/hydrogen exchanger YP_752249.1 4257326 D 318167 CDS YP_752250.1 114564736 4280477 complement(4258596..4259813) 1 NC_008345.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; peptidase M56, BlaR1; KEGG: xac:XAC3362 TonB-like protein; TonB family protein 4259813 4280477 Sfri_3584 Shewanella frigidimarina NCIMB 400 TonB family protein YP_752250.1 4258596 R 318167 CDS YP_752251.1 114564737 4280478 complement(4259813..4260187) 1 NC_008345.1 PFAM: Penicillinase repressor; KEGG: ccr:CC1640 transcriptional regulator, BlaI family; transcriptional repressor, CopY family protein 4260187 4280478 Sfri_3585 Shewanella frigidimarina NCIMB 400 transcriptional repressor, CopY family protein YP_752251.1 4259813 R 318167 CDS YP_752252.1 114564738 4280479 complement(4260376..4263564) 1 NC_008345.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SO0520 heavy metal efflux pump, CzcA family; heavy metal efflux pump, CzcA family protein 4263564 4280479 Sfri_3586 Shewanella frigidimarina NCIMB 400 heavy metal efflux pump, CzcA family protein YP_752252.1 4260376 R 318167 CDS YP_752253.1 114564739 4280480 complement(4263581..4264540) 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO0519 cation efflux protein, putative; RND family efflux transporter MFP subunit 4264540 4280480 Sfri_3587 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_752253.1 4263581 R 318167 CDS YP_752254.1 114564740 4280481 complement(4264528..4264947) 1 NC_008345.1 hypothetical protein 4264947 4280481 Sfri_3588 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752254.1 4264528 R 318167 CDS YP_752255.1 114564741 4280482 complement(4265053..4265463) 1 NC_008345.1 KEGG: son:SO0516 hypothetical protein; hypothetical protein 4265463 4280482 Sfri_3589 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752255.1 4265053 R 318167 CDS YP_752256.1 114564742 4280483 complement(4265508..4265684) 1 NC_008345.1 KEGG: son:SO0515 hypothetical protein; hypothetical protein 4265684 4280483 Sfri_3590 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752256.1 4265508 R 318167 CDS YP_752257.1 114564743 4280484 complement(4265855..4266220) 1 NC_008345.1 KEGG: son:SO0514 hypothetical protein; hypothetical protein 4266220 4280484 Sfri_3591 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752257.1 4265855 R 318167 CDS YP_752258.1 114564744 4280485 4266550..4266966 1 NC_008345.1 PFAM: Class I peptide chain release factor; KEGG: son:SO0513 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein 4266966 4280485 Sfri_3592 Shewanella frigidimarina NCIMB 400 peptidyl-tRNA hydrolase domain-containing protein YP_752258.1 4266550 D 318167 CDS YP_752259.1 114564745 4280486 4267191..4267637 1 NC_008345.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 4267637 4280486 Sfri_3593 Shewanella frigidimarina NCIMB 400 3-dehydroquinate dehydratase YP_752259.1 4267191 D 318167 CDS YP_752260.1 114564746 4280487 4267663..4268055 1 NC_008345.1 KEGG: pha:PSHAa1486 hypothetical protein; hypothetical protein 4268055 4280487 Sfri_3594 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752260.1 4267663 D 318167 CDS YP_752261.1 114564747 4280488 4268147..4269154 1 NC_008345.1 KEGG: son:SO2451 hypothetical protein; hypothetical protein 4269154 4280488 Sfri_3595 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752261.1 4268147 D 318167 CDS YP_752262.1 114564748 4280489 complement(4269258..4271021) 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Alkaline phosphatase; KEGG: son:SO0806 alkaline phosphatase, putative; twin-arginine translocation pathway signal 4271021 4280489 Sfri_3596 Shewanella frigidimarina NCIMB 400 twin-arginine translocation pathway signal YP_752262.1 4269258 R 318167 CDS YP_752263.1 114564749 4280490 4271344..4271766 1 NC_008345.1 PFAM: OsmC family protein; KEGG: vvy:VVA1125 predicted redox protein; OsmC family protein 4271766 4280490 Sfri_3597 Shewanella frigidimarina NCIMB 400 OsmC family protein YP_752263.1 4271344 D 318167 CDS YP_752264.1 114564750 4280491 complement(4271900..4272910) 1 NC_008345.1 PFAM: luciferase family protein; KEGG: pha:PSHAb0540 putative alkanal monooxygenase (FMN-linked); luciferase family protein 4272910 4280491 Sfri_3598 Shewanella frigidimarina NCIMB 400 luciferase family protein YP_752264.1 4271900 R 318167 CDS YP_752265.1 114564751 4280492 complement(4273000..4273524) 1 NC_008345.1 KEGG: son:SO1504 hypothetical protein; hypothetical protein 4273524 4280492 Sfri_3599 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752265.1 4273000 R 318167 CDS YP_752266.1 114564752 4280493 complement(4273718..4274485) 1 NC_008345.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cps:CPS_0824 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 4274485 4280493 Sfri_3600 Shewanella frigidimarina NCIMB 400 short-chain dehydrogenase/reductase SDR YP_752266.1 4273718 R 318167 CDS YP_752267.1 114564753 4280494 4274591..4274926 1 NC_008345.1 PFAM: helix-turn-helix, HxlR type; KEGG: cps:CPS_0823 transcriptional regulator; transcriptional regulator, HxlR family protein 4274926 4280494 Sfri_3601 Shewanella frigidimarina NCIMB 400 transcriptional regulator, HxlR family protein YP_752267.1 4274591 D 318167 CDS YP_752268.1 114564754 4280495 complement(4274972..4276444) 1 NC_008345.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: son:SO0541 metallo-beta-lactamase family protein; RNA-metabolising metallo-beta-lactamase 4276444 4280495 Sfri_3602 Shewanella frigidimarina NCIMB 400 RNA-metabolising metallo-beta-lactamase YP_752268.1 4274972 R 318167 CDS YP_752269.1 114564755 4280496 4276814..4278022 1 NC_008345.1 PFAM: porin, Gram-negative type; KEGG: son:SO1821 outer membrane porin, putative; porin 4278022 4280496 Sfri_3603 Shewanella frigidimarina NCIMB 400 porin YP_752269.1 4276814 D 318167 CDS YP_752270.1 114564756 4280497 complement(4278189..4278734) 1 NC_008345.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO2572 peptidyl-prolyl cis-trans isomerase B; cyclophilin type peptidyl-prolyl cis-trans isomerase 4278734 4280497 Sfri_3604 Shewanella frigidimarina NCIMB 400 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_752270.1 4278189 R 318167 CDS YP_752271.1 114564757 4280498 complement(4279047..4280387) 1 NC_008345.1 KEGG: pha:PSHAa2344 hydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 4280387 4280498 Sfri_3605 Shewanella frigidimarina NCIMB 400 amidohydrolase YP_752271.1 4279047 R 318167 CDS YP_752272.1 114564758 4280499 4280546..4281070 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rba:RB2931 conserved hypothetical protein-putative acetyltransferase; N-acetyltransferase GCN5 4281070 4280499 Sfri_3606 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_752272.1 4280546 D 318167 CDS YP_752273.1 114564759 4280500 4281646..4283508 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: vvy:VVA0651 GGDEF family protein; GAF sensor-containing diguanylate cyclase/phosphodiesterase 4283508 4280500 Sfri_3607 Shewanella frigidimarina NCIMB 400 GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_752273.1 4281646 D 318167 CDS YP_752274.1 114564760 4280501 complement(4283613..4284824) 1 NC_008345.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO1364 iron-sulfur cluster-binding protein; oxidoreductase FAD-binding subunit 4284824 4280501 Sfri_3608 Shewanella frigidimarina NCIMB 400 oxidoreductase FAD-binding subunit YP_752274.1 4283613 R 318167 CDS YP_752275.1 114564761 4280502 complement(4284938..4286596) 1 NC_008345.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 4286596 4280502 Sfri_3609 Shewanella frigidimarina NCIMB 400 hydroxylamine reductase YP_752275.1 4284938 R 318167 CDS YP_752276.1 114564762 4280503 complement(4286968..4287954) 1 NC_008345.1 KEGG: vpa:VP0375 putative lipoprotein; hypothetical protein 4287954 4280503 Sfri_3610 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752276.1 4286968 R 318167 CDS YP_752277.1 114564763 4280504 4288242..4288931 1 NC_008345.1 KEGG: son:SO0114 hypothetical protein; hypothetical protein 4288931 4280504 Sfri_3611 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752277.1 4288242 D 318167 CDS YP_752278.1 114564764 4280505 complement(4289033..4289293) 1 NC_008345.1 KEGG: son:SO2181 hypothetical protein; hypothetical protein 4289293 4280505 Sfri_3612 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752278.1 4289033 R 318167 CDS YP_752279.1 114564765 4280506 4289579..4291735 1 NC_008345.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO3564 peptidyl-dipeptidase Dcp; peptidyl-dipeptidase Dcp 4291735 4280506 Sfri_3613 Shewanella frigidimarina NCIMB 400 peptidyl-dipeptidase Dcp YP_752279.1 4289579 D 318167 CDS YP_752280.1 114564766 4280507 4292507..4293628 1 NC_008345.1 hypothetical protein 4293628 4280507 Sfri_3614 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752280.1 4292507 D 318167 CDS YP_752281.1 114564767 4280508 complement(4293862..4294674) 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 4294674 4280508 Sfri_3615 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_752281.1 4293862 R 318167 CDS YP_752282.1 114564768 4280509 complement(4294728..4295039) 1 NC_008345.1 PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 4295039 4280509 Sfri_3616 Shewanella frigidimarina NCIMB 400 transposase IS3/IS911 family protein YP_752282.1 4294728 R 318167 CDS YP_752283.1 114564769 4280510 4295394..4296050 1 NC_008345.1 hypothetical protein 4296050 4280510 Sfri_3617 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752283.1 4295394 D 318167 CDS YP_752284.1 114564770 4280511 4296382..4296840 1 NC_008345.1 KEGG: xcb:XC_2154 hypothetical protein; hypothetical protein 4296840 4280511 Sfri_3618 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752284.1 4296382 D 318167 CDS YP_752285.1 114564771 4280512 4296854..4297303 1 NC_008345.1 PFAM: protein of unknown function DUF1499; KEGG: dps:DP1404 hypothetical protein; hypothetical protein 4297303 4280512 Sfri_3619 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752285.1 4296854 D 318167 CDS YP_752286.1 114564772 4280513 4297528..4297719 1 NC_008345.1 KEGG: pha:PSHAb0267 hypothetical protein; hypothetical protein 4297719 4280513 Sfri_3620 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752286.1 4297528 D 318167 CDS YP_752287.1 114564773 4280514 complement(4297940..4298536) 1 NC_008345.1 PFAM: DSBA oxidoreductase; KEGG: reu:Reut_A2829 DsbA oxidoreductase; DSBA oxidoreductase 4298536 4280514 Sfri_3621 Shewanella frigidimarina NCIMB 400 DSBA oxidoreductase YP_752287.1 4297940 R 318167 CDS YP_752288.1 114564774 4280515 complement(4299034..4300797) 1 NC_008345.1 PFAM: band 7 protein; KEGG: son:SO1377 hypothetical protein; hypothetical protein 4300797 4280515 Sfri_3622 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752288.1 4299034 R 318167 CDS YP_752289.1 114564775 4280516 complement(4300892..4301530) 1 NC_008345.1 PFAM: protein of unknown function DUF1449; KEGG: son:SO1376 hypothetical protein; hypothetical protein 4301530 4280516 Sfri_3623 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752289.1 4300892 R 318167 CDS YP_752290.1 114564776 4280517 complement(4301903..4302781) 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: pfl:PFL_0960 hydrolase, alpha/beta fold family; alpha/beta hydrolase 4302781 4280517 Sfri_3624 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase YP_752290.1 4301903 R 318167 CDS YP_752291.1 114564777 4280518 4303177..4303920 1 NC_008345.1 PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_1586 protein of unknown function DUF81; hypothetical protein 4303920 4280518 Sfri_3625 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752291.1 4303177 D 318167 CDS YP_752292.1 114564778 4280519 4303980..4304609 1 NC_008345.1 KEGG: son:SO0492 hypothetical flavoprotein oxygenase; flavoprotein oxygenase 4304609 4280519 Sfri_3626 Shewanella frigidimarina NCIMB 400 flavoprotein oxygenase YP_752292.1 4303980 D 318167 CDS YP_752293.1 114564779 4280520 4304692..4305681 1 NC_008345.1 KEGG: vfi:VF1129 hypothetical protein; hypothetical protein 4305681 4280520 Sfri_3627 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752293.1 4304692 D 318167 CDS YP_752294.1 114564780 4280521 4305902..4307068 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vvy:VVA0239 hypothetical protein; diguanylate cyclase 4307068 4280521 Sfri_3628 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_752294.1 4305902 D 318167 CDS YP_752295.1 114564781 4280522 complement(4307134..4307637) 1 NC_008345.1 KEGG: ppr:PBPRB1268 hypothetical protein; glycine cleavage system regulatory protein-like protein 4307637 4280522 Sfri_3629 Shewanella frigidimarina NCIMB 400 glycine cleavage system regulatory protein-like protein YP_752295.1 4307134 R 318167 CDS YP_752296.1 114564782 4280523 4308330..4308959 1 NC_008345.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: son:SO3588 gpr1/fun34/YaaH family protein; GPR1/FUN34/yaaH family protein 4308959 4280523 Sfri_3630 Shewanella frigidimarina NCIMB 400 GPR1/FUN34/yaaH family protein YP_752296.1 4308330 D 318167 CDS YP_752297.1 114564783 4280524 complement(4309027..4309545) 1 NC_008345.1 KEGG: son:SO0941 hypothetical protein; hypothetical protein 4309545 4280524 Sfri_3631 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752297.1 4309027 R 318167 CDS YP_752298.1 114564784 4280525 complement(4309550..4310347) 1 NC_008345.1 PFAM: transcriptional regulator domain protein; KEGG: son:SO0940 transcriptional regulator-related protein; response regulator receiver protein 4310347 4280525 Sfri_3632 Shewanella frigidimarina NCIMB 400 response regulator receiver protein YP_752298.1 4309550 R 318167 CDS YP_752299.1 114564785 4280526 4310807..4311628 1 NC_008345.1 KEGG: son:SO0939 cytochrome c, putative; cytochrome c, putative 4311628 4280526 Sfri_3633 Shewanella frigidimarina NCIMB 400 cytochrome c, putative YP_752299.1 4310807 D 318167 CDS YP_752300.1 114564786 4280527 4311639..4312223 1 NC_008345.1 KEGG: son:SO0938 hypothetical protein; hypothetical protein 4312223 4280527 Sfri_3634 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752300.1 4311639 D 318167 CDS YP_752301.1 114564787 4280528 complement(4312473..4314566) 1 NC_008345.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO2047 prolyl oligopeptidase family protein; prolyl oligopeptidase 4314566 4280528 Sfri_3635 Shewanella frigidimarina NCIMB 400 prolyl oligopeptidase YP_752301.1 4312473 R 318167 CDS YP_752302.1 114564788 4280529 4314795..4315073 1 NC_008345.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ppr:PBPRB0852 putative peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase 4315073 4280529 Sfri_3636 Shewanella frigidimarina NCIMB 400 PpiC-type peptidyl-prolyl cis-trans isomerase YP_752302.1 4314795 D 318167 CDS YP_752303.1 114564789 4280530 complement(4315248..4315973) 1 NC_008345.1 KEGG: neu:NE1275 hypothetical protein; hypothetical protein 4315973 4280530 Sfri_3637 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752303.1 4315248 R 318167 CDS YP_752304.1 114564790 4280531 4316217..4318043 1 NC_008345.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: cps:CPS_0753 alkaline serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 4318043 4280531 Sfri_3638 Shewanella frigidimarina NCIMB 400 peptidase S8/S53 subtilisin kexin sedolisin YP_752304.1 4316217 D 318167 CDS YP_752305.1 114564791 4280532 complement(4318432..4319193) 1 NC_008345.1 hypothetical protein 4319193 4280532 Sfri_3639 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752305.1 4318432 R 318167 CDS YP_752306.1 114564792 4280533 4319604..4319855 1 NC_008345.1 KEGG: son:SO0721 hypothetical protein; hypothetical protein 4319855 4280533 Sfri_3640 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752306.1 4319604 D 318167 CDS YP_752307.1 114564793 4280534 complement(4319937..4320956) 1 NC_008345.1 hypothetical protein 4320956 4280534 Sfri_3641 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752307.1 4319937 R 318167 CDS YP_752308.1 114564794 4280535 complement(4320961..4323192) 1 NC_008345.1 PFAM: peptidase domain protein; PGAP1 family protein; KEGG: vvy:VVA0946 hypothetical protein; peptidase domain-containing protein 4323192 4280535 Sfri_3642 Shewanella frigidimarina NCIMB 400 peptidase domain-containing protein YP_752308.1 4320961 R 318167 CDS YP_752309.1 114564795 4280536 complement(4323288..4323779) 1 NC_008345.1 PFAM: regulatory protein, MarR; KEGG: vpa:VP1763 transcriptional regulator, MarR family; transcriptional regulator, MarR family protein 4323779 4280536 Sfri_3643 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MarR family protein YP_752309.1 4323288 R 318167 CDS YP_752310.1 114564796 4280537 4323926..4324807 1 NC_008345.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: vpa:VP1764 putative transmembrane protein; hypothetical protein 4324807 4280537 Sfri_3644 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752310.1 4323926 D 318167 CDS YP_752311.1 114564797 4280538 complement(4324852..4325364) 1 NC_008345.1 KEGG: cps:CPS_0512 putative lipoprotein; putative lipoprotein 4325364 4280538 Sfri_3645 Shewanella frigidimarina NCIMB 400 putative lipoprotein YP_752311.1 4324852 R 318167 CDS YP_752312.1 114564798 4280539 complement(4325520..4325906) 1 NC_008345.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pae:PA4486 4-carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 4325906 4280539 Sfri_3646 Shewanella frigidimarina NCIMB 400 carboxymuconolactone decarboxylase YP_752312.1 4325520 R 318167 CDS YP_752313.1 114564799 4280540 4326215..4326829 1 NC_008345.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: son:SO0733 cold shock domain family protein; cold-shock DNA-binding domain-containing protein 4326829 4280540 Sfri_3647 Shewanella frigidimarina NCIMB 400 cold-shock DNA-binding domain-containing protein YP_752313.1 4326215 D 318167 CDS YP_752314.1 114564800 4280541 complement(4326972..4327973) 1 NC_008345.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: pae:PA2096 probable transcriptional regulator; AraC family transcriptional regulator 4327973 4280541 Sfri_3648 Shewanella frigidimarina NCIMB 400 AraC family transcriptional regulator YP_752314.1 4326972 R 318167 CDS YP_752315.1 114564801 4280542 4328194..4329660 1 NC_008345.1 KEGG: bur:Bcep18194_C7122 flavin-containing monooxygenase FMO; flavin-containing monooxygenase FMO 4329660 4280542 Sfri_3649 Shewanella frigidimarina NCIMB 400 flavin-containing monooxygenase FMO YP_752315.1 4328194 D 318167 CDS YP_752316.1 114564802 4280543 4329749..4330519 1 NC_008345.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: pae:PA2099 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 4330519 4280543 Sfri_3650 Shewanella frigidimarina NCIMB 400 short-chain dehydrogenase/reductase SDR YP_752316.1 4329749 D 318167 CDS YP_752317.1 114564803 4280544 4330564..4331685 1 NC_008345.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rpa:RPA2425 putative lipase/esterase; alpha/beta hydrolase domain-containing protein 4331685 4280544 Sfri_3651 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase domain-containing protein YP_752317.1 4330564 D 318167 CDS YP_752318.1 114564804 4280545 4331882..4332160 1 NC_008345.1 hypothetical protein 4332160 4280545 Sfri_3652 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752318.1 4331882 D 318167 CDS YP_752319.1 114564805 4280546 complement(4332446..4333195) 1 NC_008345.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4069 hypothetical protein; methyltransferase type 12 4333195 4280546 Sfri_3653 Shewanella frigidimarina NCIMB 400 methyltransferase type 12 YP_752319.1 4332446 R 318167 CDS YP_752320.1 114564806 4280547 complement(4333711..4334157) 1 NC_008345.1 hypothetical protein 4334157 4280547 Sfri_3654 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752320.1 4333711 R 318167 CDS YP_752321.1 114564807 4280548 4334432..4334920 1 NC_008345.1 PFAM: Uncharacterized protein UPF0114; KEGG: son:SO3997 hypothetical protein; hypothetical protein 4334920 4280548 Sfri_3655 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752321.1 4334432 D 318167 CDS YP_752322.1 114564808 4280549 complement(4334985..4335221) 1 NC_008345.1 PFAM: helix-turn-helix domain protein; KEGG: son:SO0705 transcriptional regulator, Cro/CI family; transcriptional regulator, XRE family protein 4335221 4280549 Sfri_3656 Shewanella frigidimarina NCIMB 400 transcriptional regulator, XRE family protein YP_752322.1 4334985 R 318167 CDS YP_752323.1 114564809 4280550 4335461..4336516 1 NC_008345.1 PFAM: NERD domain protein; KEGG: pha:PSHAb0100 putative orphan protein; NERD domain-containing protein 4336516 4280550 Sfri_3657 Shewanella frigidimarina NCIMB 400 NERD domain-containing protein YP_752323.1 4335461 D 318167 CDS YP_752324.1 114564810 4280551 4336551..4337279 1 NC_008345.1 PFAM: protein of unknown function DUF88; KEGG: syn:slr1870 hypothetical protein; hypothetical protein 4337279 4280551 Sfri_3658 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752324.1 4336551 D 318167 CDS YP_752325.1 114564811 4280552 complement(4337530..4339533) 1 NC_008345.1 KEGG: pgi:PG1436 ATPase, putative; ATPase 4339533 4280552 Sfri_3659 Shewanella frigidimarina NCIMB 400 ATPase YP_752325.1 4337530 R 318167 CDS YP_752326.1 114564812 4280553 complement(4339965..4341602) 1 NC_008345.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 4341602 groEL 4280553 groEL Shewanella frigidimarina NCIMB 400 chaperonin GroEL YP_752326.1 4339965 R 318167 CDS YP_752327.1 114564813 4280554 complement(4341660..4341950) 1 NC_008345.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4341950 groES 4280554 groES Shewanella frigidimarina NCIMB 400 co-chaperonin GroES YP_752327.1 4341660 R 318167 CDS YP_752328.1 114564814 4280555 4342165..4343595 1 NC_008345.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO0702 MATE efflux family protein; MATE efflux family protein 4343595 4280555 Sfri_3662 Shewanella frigidimarina NCIMB 400 MATE efflux family protein YP_752328.1 4342165 D 318167 CDS YP_752329.1 114564815 4280556 4343686..4344063 1 NC_008345.1 KEGG: pha:PSHAb0447 hypothetical protein; hypothetical protein 4344063 4280556 Sfri_3663 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752329.1 4343686 D 318167 CDS YP_752330.1 114564816 4280557 complement(4344259..4344906) 1 NC_008345.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: son:SO0698 FxsA protein; FxsA cytoplasmic membrane protein 4344906 4280557 Sfri_3664 Shewanella frigidimarina NCIMB 400 FxsA cytoplasmic membrane protein YP_752330.1 4344259 R 318167 CDS YP_752331.1 114564817 4280558 4345135..4345461 1 NC_008345.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: son:SO0697 periplasmic divalent cation tolerance protein CutA; CutA1 divalent ion tolerance protein 4345461 4280558 Sfri_3665 Shewanella frigidimarina NCIMB 400 CutA1 divalent ion tolerance protein YP_752331.1 4345135 D 318167 CDS YP_752332.1 114564818 4280559 4345434..4347320 1 NC_008345.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 4347320 dipZ 4280559 dipZ Shewanella frigidimarina NCIMB 400 thiol:disulfide interchange protein YP_752332.1 4345434 D 318167 CDS YP_752333.1 114564819 4280560 4347773..4349443 1 NC_008345.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: son:SO0695 glutathione-regulated potassium-efflux system protein KefC, putative; sodium/hydrogen exchanger 4349443 4280560 Sfri_3667 Shewanella frigidimarina NCIMB 400 sodium/hydrogen exchanger YP_752333.1 4347773 D 318167 CDS YP_752334.1 114564820 4280561 4349616..4350758 1 NC_008345.1 KEGG: son:SO0694 galactokinase; TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; galactokinase 4350758 4280561 Sfri_3668 Shewanella frigidimarina NCIMB 400 galactokinase YP_752334.1 4349616 D 318167 CDS YP_752335.1 114564821 4280562 4350784..4351818 1 NC_008345.1 PFAM: Aldose 1-epimerase; KEGG: son:SO0693 aldose 1-epimerase; aldose 1-epimerase 4351818 4280562 Sfri_3669 Shewanella frigidimarina NCIMB 400 aldose 1-epimerase YP_752335.1 4350784 D 318167 CDS YP_752336.1 114564822 4280563 4351808..4352221 1 NC_008345.1 KEGG: vpa:VPA0336 hypothetical protein; hypothetical protein 4352221 4280563 Sfri_3670 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752336.1 4351808 D 318167 CDS YP_752337.1 114564823 4280564 complement(4352340..4352777) 1 NC_008345.1 KEGG: son:SO0691 hypothetical protein; hypothetical protein 4352777 4280564 Sfri_3671 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752337.1 4352340 R 318167 CDS YP_752338.1 114564824 4280565 complement(4353154..4354167) 1 NC_008345.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0640 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase 4354167 4280565 Sfri_3672 Shewanella frigidimarina NCIMB 400 alcohol dehydrogenase YP_752338.1 4353154 R 318167 CDS YP_752339.1 114564825 4280566 4354363..4355154 1 NC_008345.1 KEGG: cps:CPS_4859 putative cation efflux protein; putative cation efflux protein 4355154 4280566 Sfri_3673 Shewanella frigidimarina NCIMB 400 putative cation efflux protein YP_752339.1 4354363 D 318167 CDS YP_752340.1 114564826 4280567 complement(4355323..4357050) 1 NC_008345.1 putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM 4357050 4280567 Sfri_3674 Shewanella frigidimarina NCIMB 400 putative sulfate transporter YchM YP_752340.1 4355323 R 318167 CDS YP_752341.1 114564827 4280568 complement(4357338..4358594) 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pfl:PFL_5112 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 4358594 4280568 Sfri_3675 Shewanella frigidimarina NCIMB 400 periplasmic sensor signal transduction histidine kinase YP_752341.1 4357338 R 318167 CDS YP_752342.1 114564828 4280569 complement(4358653..4359345) 1 NC_008345.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_04130 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two component transcriptional regulator, winged helix family protein 4359345 4280569 Sfri_3676 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, winged helix family protein YP_752342.1 4358653 R 318167 CDS YP_752343.1 114564829 4280570 complement(4359366..4362527) 1 NC_008345.1 PFAM: acriflavin resistance protein; KEGG: hch:HCH_04131 cation/multidrug efflux pump; acriflavin resistance protein 4362527 4280570 Sfri_3677 Shewanella frigidimarina NCIMB 400 acriflavin resistance protein YP_752343.1 4359366 R 318167 CDS YP_752344.1 114564830 4280571 complement(4362530..4363750) 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: hch:HCH_04132 membrane-fusion protein; RND family efflux transporter MFP subunit 4363750 4280571 Sfri_3678 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_752344.1 4362530 R 318167 CDS YP_752345.1 114564831 4280572 complement(4363740..4365143) 1 NC_008345.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: hch:HCH_04133 outer membrane protein; RND efflux system, outer membrane lipoprotein, NodT family protein 4365143 4280572 Sfri_3679 Shewanella frigidimarina NCIMB 400 RND efflux system, outer membrane lipoprotein, NodT family protein YP_752345.1 4363740 R 318167 CDS YP_752346.1 114564832 4280573 complement(4365418..4366326) 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC1175 haloalkane dehalogenase, putative; haloalkane dehalogenase 4366326 4280573 Sfri_3680 Shewanella frigidimarina NCIMB 400 haloalkane dehalogenase YP_752346.1 4365418 R 318167 CDS YP_752347.1 114564833 4280574 complement(4366530..4366976) 1 NC_008345.1 KEGG: son:SO1432 hypothetical protein; hypothetical protein 4366976 4280574 Sfri_3681 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752347.1 4366530 R 318167 CDS YP_752348.1 114564834 4280575 complement(4366991..4367650) 1 NC_008345.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO1431 hypothetical protein; cytoplasmic chaperone TorD family protein 4367650 4280575 Sfri_3682 Shewanella frigidimarina NCIMB 400 cytoplasmic chaperone TorD family protein YP_752348.1 4366991 R 318167 CDS YP_752349.1 114564835 4280576 complement(4367708..4368370) 1 NC_008345.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1430 anaerobic dimethyl sulfoxide reductase, B subunit; 4Fe-4S ferredoxin 4368370 4280576 Sfri_3683 Shewanella frigidimarina NCIMB 400 4Fe-4S ferredoxin YP_752349.1 4367708 R 318167 CDS YP_752350.1 114564836 4280577 complement(4368385..4370901) 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO1429 anaerobic dimethyl sulfoxide reductase, A subunit; anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein 4370901 4280577 Sfri_3684 Shewanella frigidimarina NCIMB 400 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein YP_752350.1 4368385 R 318167 CDS YP_752351.1 114564837 4280578 complement(4370935..4372944) 1 NC_008345.1 KEGG: son:SO1428 outer membrane protein; outer membrane protein 4372944 4280578 Sfri_3685 Shewanella frigidimarina NCIMB 400 outer membrane protein YP_752351.1 4370935 R 318167 CDS YP_752352.1 114564838 4280579 complement(4372959..4373903) 1 NC_008345.1 TIGRFAM: cytochrome C family protein; KEGG: son:SO1427 decaheme cytochrome c; cytochrome C family protein 4373903 4280579 Sfri_3686 Shewanella frigidimarina NCIMB 400 cytochrome C family protein YP_752352.1 4372959 R 318167 CDS YP_752353.1 114564839 4280580 4374348..4375142 1 NC_008345.1 hypothetical protein 4375142 4280580 Sfri_3687 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752353.1 4374348 D 318167 CDS YP_752354.1 114564840 4280581 complement(4375464..4376849) 1 NC_008345.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: ade:Adeh_2101 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma-54-specific transcriptional regulator 4376849 4280581 Sfri_3688 Shewanella frigidimarina NCIMB 400 Fis family two component sigma-54-specific transcriptional regulator YP_752354.1 4375464 R 318167 CDS YP_752355.1 114564841 4280582 complement(4376853..4378820) 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; SMART: extracellular solute-binding protein, family 3; KEGG: gsu:GSU3419 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 4378820 4280582 Sfri_3689 Shewanella frigidimarina NCIMB 400 periplasmic sensor signal transduction histidine kinase YP_752355.1 4376853 R 318167 CDS YP_752356.1 114564842 4280583 4379265..4381016 1 NC_008345.1 KEGG: son:SO0970 fumarate reductase flavoprotein subunit precursor; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; flavocytochrome c 4381016 4280583 Sfri_3690 Shewanella frigidimarina NCIMB 400 flavocytochrome c YP_752356.1 4379265 D 318167 CDS YP_752357.1 114564843 4280584 4381420..4381827 1 NC_008345.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppr:PBPRA1918 putative glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 4381827 4280584 Sfri_3691 Shewanella frigidimarina NCIMB 400 glyoxalase/bleomycin resistance protein/dioxygenase YP_752357.1 4381420 D 318167 CDS YP_752358.1 114564844 4280585 complement(4382030..4383283) 1 NC_008345.1 PFAM: outer membrane porin; KEGG: tdn:Tmden_1456 hypothetical protein; outer membrane porin 4383283 4280585 Sfri_3692 Shewanella frigidimarina NCIMB 400 outer membrane porin YP_752358.1 4382030 R 318167 CDS YP_752359.1 114564845 4280586 complement(4383349..4383705) 1 NC_008345.1 KEGG: ade:Adeh_2097 hypothetical protein; hypothetical protein 4383705 4280586 Sfri_3693 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752359.1 4383349 R 318167 CDS YP_752360.1 114564846 4280587 complement(4383773..4385452) 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: dsy:DSY3663 putative fumarate reductase flavoprotein subunit; twin-arginine translocation pathway signal 4385452 4280587 Sfri_3694 Shewanella frigidimarina NCIMB 400 twin-arginine translocation pathway signal YP_752360.1 4383773 R 318167 CDS YP_752361.1 114564847 4280588 4385928..4386653 1 NC_008345.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: gsu:GSU3396 transcriptional regulator, GntR family; regulatory protein GntR 4386653 4280588 Sfri_3695 Shewanella frigidimarina NCIMB 400 regulatory protein GntR YP_752361.1 4385928 D 318167 CDS YP_752362.1 114564848 4280589 4387002..4388732 1 NC_008345.1 PFAM: Tannase and feruloyl esterase; KEGG: reu:Reut_B4873 feruloyl esterase; feruloyl esterase 4388732 4280589 Sfri_3696 Shewanella frigidimarina NCIMB 400 feruloyl esterase YP_752362.1 4387002 D 318167 CDS YP_752363.1 114564849 4280590 complement(4388929..4389687) 1 NC_008345.1 KEGG: noc:Noc_2228 hypothetical protein; hypothetical protein 4389687 4280590 Sfri_3697 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752363.1 4388929 R 318167 CDS YP_752364.1 114564850 4280591 complement(4389816..4391396) 1 NC_008345.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 4391396 4280591 Sfri_3698 Shewanella frigidimarina NCIMB 400 anaerobic nitric oxide reductase transcriptional regulator YP_752364.1 4389816 R 318167 CDS YP_752365.1 114564851 4280592 4391583..4392764 1 NC_008345.1 PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ppu:PP0808 flavohemoprotein; globin 4392764 4280592 Sfri_3699 Shewanella frigidimarina NCIMB 400 globin YP_752365.1 4391583 D 318167 CDS YP_752366.1 114564852 4280593 complement(4392898..4394055) 1 NC_008345.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: noc:Noc_0207 protein phosphatase 2C-like, stage II sporulation E; serine phosphatase 4394055 4280593 Sfri_3700 Shewanella frigidimarina NCIMB 400 serine phosphatase YP_752366.1 4392898 R 318167 CDS YP_752367.1 114564853 4280594 complement(4394065..4394640) 1 NC_008345.1 PFAM: toluene tolerance family protein; KEGG: gme:Gmet_0784 toluene tolerance; toluene tolerance family protein 4394640 4280594 Sfri_3701 Shewanella frigidimarina NCIMB 400 toluene tolerance family protein YP_752367.1 4394065 R 318167 CDS YP_752368.1 114564854 4280595 complement(4394640..4395089) 1 NC_008345.1 PFAM: Mammalian cell entry related domain protein; KEGG: pca:Pcar_0449 putative ABC transport system substrate-binding protein; hypothetical protein 4395089 4280595 Sfri_3702 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752368.1 4394640 R 318167 CDS YP_752369.1 114564855 4280596 complement(4395102..4395896) 1 NC_008345.1 PFAM: protein of unknown function DUF140; KEGG: pca:Pcar_0447 putative ABC transport system permease protein; hypothetical protein 4395896 4280596 Sfri_3703 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752369.1 4395102 R 318167 CDS YP_752370.1 114564856 4280597 complement(4395896..4396693) 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb0331 ABC-type transport system; ABC transporter 4396693 4280597 Sfri_3704 Shewanella frigidimarina NCIMB 400 ABC transporter YP_752370.1 4395896 R 318167 CDS YP_752371.1 114564857 4280598 complement(4396686..4397015) 1 NC_008345.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mag:amb0333 anti-anti-sigma regulatory factor; anti-sigma-factor antagonist 4397015 4280598 Sfri_3705 Shewanella frigidimarina NCIMB 400 anti-sigma-factor antagonist YP_752371.1 4396686 R 318167 CDS YP_752372.1 114564858 4280599 complement(4397022..4397423) 1 NC_008345.1 KEGG: mag:amb0334 serine phosphatase RsbU; putative anti-sigma regulatory factor 4397423 4280599 Sfri_3706 Shewanella frigidimarina NCIMB 400 putative anti-sigma regulatory factor YP_752372.1 4397022 R 318167 CDS YP_752373.1 114564859 4280600 complement(4397427..4398092) 1 NC_008345.1 PFAM: VacJ family lipoprotein; KEGG: ilo:IL1097 surface lipoprotein; VacJ family lipoprotein 4398092 4280600 Sfri_3707 Shewanella frigidimarina NCIMB 400 VacJ family lipoprotein YP_752373.1 4397427 R 318167 CDS YP_752374.1 114564860 4280601 complement(4398499..4398717) 1 NC_008345.1 KEGG: hch:HCH_02263 hypothetical protein; hypothetical protein 4398717 4280601 Sfri_3708 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752374.1 4398499 R 318167 CDS YP_752375.1 114564861 4280602 4399048..4399794 1 NC_008345.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: son:SO1652 putative histidinol phosphatase; putative hydrolase 4399794 4280602 Sfri_3709 Shewanella frigidimarina NCIMB 400 putative hydrolase YP_752375.1 4399048 D 318167 CDS YP_752376.1 114564862 4280603 complement(4399965..4400693) 1 NC_008345.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: son:SO4028 single-strand binding protein; single-strand binding protein 4400693 4280603 Sfri_3710 Shewanella frigidimarina NCIMB 400 single-strand binding protein YP_752376.1 4399965 R 318167 CDS YP_752377.1 114564863 4280604 complement(4400759..4402126) 1 NC_008345.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4029 transporter, putative; major facilitator transporter 4402126 4280604 Sfri_3711 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_752377.1 4400759 R 318167 CDS YP_752378.1 114564864 4280605 4402371..4405232 1 NC_008345.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: son:SO4030 excinuclease ABC, A subunit; excinuclease ABC subunit A 4405232 4280605 Sfri_3712 Shewanella frigidimarina NCIMB 400 excinuclease ABC subunit A YP_752378.1 4402371 D 318167 CDS YP_752379.1 114564865 4280606 4405283..4406254 1 NC_008345.1 PFAM: peptidase M28; KEGG: son:SO4032 hypothetical protein; peptidase M28 4406254 4280606 Sfri_3713 Shewanella frigidimarina NCIMB 400 peptidase M28 YP_752379.1 4405283 D 318167 CDS YP_752380.1 114564866 4280607 4406509..4408413 1 NC_008345.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO4034 ATP-dependent RNA helicase DeaD; DEAD/DEAH box helicase 4408413 4280607 Sfri_3714 Shewanella frigidimarina NCIMB 400 DEAD/DEAH box helicase YP_752380.1 4406509 D 318167 CDS YP_752381.1 114564867 4280608 complement(4408850..4409818) 1 NC_008345.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4040 integral membrane domain protein; hypothetical protein 4409818 4280608 Sfri_3715 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752381.1 4408850 R 318167 CDS YP_752382.1 114564868 4280609 4410026..4411129 1 NC_008345.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 4411129 4280609 Sfri_3716 Shewanella frigidimarina NCIMB 400 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_752382.1 4410026 D 318167 CDS YP_752383.1 114564869 4280610 4411467..4413647 1 NC_008345.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_2724 FhuE receptor; TonB-dependent siderophore receptor 4413647 4280610 Sfri_3717 Shewanella frigidimarina NCIMB 400 TonB-dependent siderophore receptor YP_752383.1 4411467 D 318167 CDS YP_752384.1 114564870 4280611 complement(4413770..4416382) 1 NC_008345.1 PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; Endonuclease/exonuclease/phosphatase; KEGG: son:SO1066 extracellular nuclease; endonuclease/exonuclease/phosphatase 4416382 4280611 Sfri_3718 Shewanella frigidimarina NCIMB 400 endonuclease/exonuclease/phosphatase YP_752384.1 4413770 R 318167 CDS YP_752385.1 114564871 4280612 4416962..4418401 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vvy:VVA0728 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4418401 4280612 Sfri_3719 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_752385.1 4416962 D 318167 CDS YP_752386.1 114564872 4280613 complement(4418534..4419901) 1 NC_008345.1 KEGG: son:SO4018 hypothetical protein; hypothetical protein 4419901 4280613 Sfri_3720 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752386.1 4418534 R 318167 CDS YP_752387.1 114564873 4280614 complement(4420099..4421478) 1 NC_008345.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: son:SO4078 PmbA protein; C69 family peptidase 4421478 4280614 Sfri_3721 Shewanella frigidimarina NCIMB 400 C69 family peptidase YP_752387.1 4420099 R 318167 CDS YP_752388.1 114564874 4280615 4421638..4422171 1 NC_008345.1 PFAM: protein of unknown function DUF615; KEGG: son:SO4079 hypothetical protein; hypothetical protein 4422171 4280615 Sfri_3722 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752388.1 4421638 D 318167 CDS YP_752389.1 114564875 4280616 4422219..4424699 1 NC_008345.1 PFAM: Ig domain protein, group 1 domain protein; KEGG: son:SO4080 hypothetical protein; Ig domain-containing protein 4424699 4280616 Sfri_3723 Shewanella frigidimarina NCIMB 400 Ig domain-containing protein YP_752389.1 4422219 D 318167 CDS YP_752390.1 114564876 4280617 4425008..4425409 1 NC_008345.1 hypothetical protein 4425409 4280617 Sfri_3724 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752390.1 4425008 D 318167 CDS YP_752391.1 114564877 4280618 4425746..4426636 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_4160 substrate-binding transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 4426636 4280618 Sfri_3725 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_752391.1 4425746 D 318167 CDS YP_752392.1 114564878 4280619 4427032..4427544 1 NC_008345.1 KEGG: cps:CPS_4161 hypothetical protein; hypothetical protein 4427544 4280619 Sfri_3726 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752392.1 4427032 D 318167 CDS YP_752393.1 114564879 4280620 complement(4427727..4428872) 1 NC_008345.1 KEGG: son:SO4087 conserved hypothetical protein; hypothetical protein 4428872 4280620 Sfri_3727 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752393.1 4427727 R 318167 CDS YP_752394.1 114564880 4280621 complement(4428869..4430041) 1 NC_008345.1 KEGG: son:SO4088 conserved hypothetical protein; hypothetical protein 4430041 4280621 Sfri_3728 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752394.1 4428869 R 318167 CDS YP_752395.1 114564881 4280622 complement(4430054..4431043) 1 NC_008345.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO4089 HlyD family secretion protein; secretion protein HlyD family protein 4431043 4280622 Sfri_3729 Shewanella frigidimarina NCIMB 400 secretion protein HlyD family protein YP_752395.1 4430054 R 318167 CDS YP_752396.1 114564882 4280623 complement(4431033..4432466) 1 NC_008345.1 PFAM: outer membrane efflux protein; KEGG: son:SO4090 outer membrane efflux protein; outer membrane efflux protein 4432466 4280623 Sfri_3730 Shewanella frigidimarina NCIMB 400 outer membrane efflux protein YP_752396.1 4431033 R 318167 CDS YP_752397.1 114564883 4280624 complement(4432650..4434098) 1 NC_008345.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: son:SO4091 TldD protein; C69 family peptidase 4434098 4280624 Sfri_3731 Shewanella frigidimarina NCIMB 400 C69 family peptidase YP_752397.1 4432650 R 318167 CDS YP_752398.1 114564884 4280625 complement(4434194..4435024) 1 NC_008345.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: son:SO4092 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4435024 4280625 Sfri_3732 Shewanella frigidimarina NCIMB 400 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_752398.1 4434194 R 318167 CDS YP_752399.1 114564885 4280626 complement(4434948..4439279) 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO4093 hypothetical protein; hypothetical protein 4439279 4280626 Sfri_3733 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752399.1 4434948 R 318167 CDS YP_752400.1 114564886 4280627 complement(4439279..4440769) 1 NC_008345.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 4440769 4280627 Sfri_3734 Shewanella frigidimarina NCIMB 400 ribonuclease G YP_752400.1 4439279 R 318167 CDS YP_752401.1 114564887 4280628 complement(4440851..4441438) 1 NC_008345.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO4095 maf protein; maf protein 4441438 4280628 Sfri_3735 Shewanella frigidimarina NCIMB 400 maf protein YP_752401.1 4440851 R 318167 CDS YP_752402.1 114564888 4280629 complement(4441496..4441987) 1 NC_008345.1 PFAM: Rod shape-determining protein MreD; KEGG: son:SO4096 rod shape-determining protein MreD; rod shape-determining protein MreD 4441987 4280629 Sfri_3736 Shewanella frigidimarina NCIMB 400 rod shape-determining protein MreD YP_752402.1 4441496 R 318167 CDS YP_752403.1 114564889 4280630 complement(4441984..4442946) 1 NC_008345.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 4442946 4280630 Sfri_3737 Shewanella frigidimarina NCIMB 400 rod shape-determining protein MreC YP_752403.1 4441984 R 318167 CDS YP_752404.1 114564890 4280631 complement(4443010..4444059) 1 NC_008345.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 4444059 4280631 Sfri_3738 Shewanella frigidimarina NCIMB 400 rod shape-determining protein MreB YP_752404.1 4443010 R 318167 CDS YP_752405.1 114564891 4280632 complement(4444252..4448850) 1 NC_008345.1 KEGG: son:SO4100 MSHA biogenesis protein MshQ; hypothetical protein 4448850 4280632 Sfri_3739 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752405.1 4444252 R 318167 CDS YP_752406.1 114564892 4280633 complement(4448840..4449295) 1 NC_008345.1 KEGG: son:SO4101 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP 4449295 4280633 Sfri_3740 Shewanella frigidimarina NCIMB 400 MSHA biogenesis protein MshP YP_752406.1 4448840 R 318167 CDS YP_752407.1 114564893 4280634 complement(4449285..4450112) 1 NC_008345.1 PFAM: methylation site containing protein; KEGG: son:SO4102 MSHA biogenesis protein MshO; methylation site containing protein 4450112 4280634 Sfri_3741 Shewanella frigidimarina NCIMB 400 methylation site containing protein YP_752407.1 4449285 R 318167 CDS YP_752408.1 114564894 4280635 complement(4450112..4450648) 1 NC_008345.1 PFAM: methylation site containing protein; KEGG: son:SO4103 MSHA pilin protein MshD; methylation site containing protein 4450648 4280635 Sfri_3742 Shewanella frigidimarina NCIMB 400 methylation site containing protein YP_752408.1 4450112 R 318167 CDS YP_752409.1 114564895 4280636 complement(4450638..4451117) 1 NC_008345.1 PFAM: methylation site containing protein; KEGG: son:SO4104 MSHA pilin protein MshC; methylation site containing protein 4451117 4280636 Sfri_3743 Shewanella frigidimarina NCIMB 400 methylation site containing protein YP_752409.1 4450638 R 318167 CDS YP_752410.1 114564896 4280637 complement(4451358..4451879) 1 NC_008345.1 PFAM: methylation site containing protein; KEGG: son:SO4105 MSHA pilin protein MshA; methylation site containing protein 4451879 4280637 Sfri_3744 Shewanella frigidimarina NCIMB 400 methylation site containing protein YP_752410.1 4451358 R 318167 CDS YP_752411.1 114564897 4280638 complement(4451945..4452550) 1 NC_008345.1 PFAM: methylation site containing protein; KEGG: son:SO4106 MSHA pilin protein MshB; methylation site containing protein 4452550 4280638 Sfri_3745 Shewanella frigidimarina NCIMB 400 methylation site containing protein YP_752411.1 4451945 R 318167 CDS YP_752412.1 114564898 4280639 complement(4452660..4453238) 1 NC_008345.1 KEGG: son:SO4107 hypothetical protein; hypothetical protein 4453238 4280639 Sfri_3746 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752412.1 4452660 R 318167 CDS YP_752413.1 114564899 4280640 complement(4453283..4454497) 1 NC_008345.1 PFAM: type II secretion system protein; KEGG: son:SO4108 MSHA biogenesis protein MshG; type II secretion system protein 4454497 4280640 Sfri_3747 Shewanella frigidimarina NCIMB 400 type II secretion system protein YP_752413.1 4453283 R 318167 CDS YP_752414.1 114564900 4280641 complement(4454500..4456260) 1 NC_008345.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO4109 MSHA biogenesis protein MshE; type II secretion system protein E 4456260 4280641 Sfri_3748 Shewanella frigidimarina NCIMB 400 type II secretion system protein E YP_752414.1 4454500 R 318167 CDS YP_752415.1 114564901 4280642 complement(4456257..4457534) 1 NC_008345.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO4110 MSHA biogenesis protein MshN, putative; hypothetical protein 4457534 4280642 Sfri_3749 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752415.1 4456257 R 318167 CDS YP_752416.1 114564902 4280643 complement(4457549..4458493) 1 NC_008345.1 KEGG: son:SO4111 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM 4458493 4280643 Sfri_3750 Shewanella frigidimarina NCIMB 400 MSHA biogenesis protein MshM YP_752416.1 4457549 R 318167 CDS YP_752417.1 114564903 4280644 complement(4458563..4460233) 1 NC_008345.1 TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB, short N-terminal domain protein; KEGG: son:SO4112 MSHA biogenesis protein MshL; pilus (MSHA type) biogenesis protein MshL 4460233 4280644 Sfri_3751 Shewanella frigidimarina NCIMB 400 pilus (MSHA type) biogenesis protein MshL YP_752417.1 4458563 R 318167 CDS YP_752418.1 114564904 4280645 complement(4460247..4460573) 1 NC_008345.1 KEGG: son:SO4113 MSHA biogenesis protein MshK; MSHA biogenesis protein MshK 4460573 4280645 Sfri_3752 Shewanella frigidimarina NCIMB 400 MSHA biogenesis protein MshK YP_752418.1 4460247 R 318167 CDS YP_752419.1 114564905 4280646 complement(4460554..4461210) 1 NC_008345.1 KEGG: son:SO4114 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ 4461210 4280646 Sfri_3753 Shewanella frigidimarina NCIMB 400 MSHA biogenesis protein MshJ YP_752419.1 4460554 R 318167 CDS YP_752420.1 114564906 4280647 complement(4461207..4461755) 1 NC_008345.1 KEGG: vch:VC0399 MSHA biogenesis protein MshI; hypothetical protein 4461755 4280647 Sfri_3754 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752420.1 4461207 R 318167 CDS YP_752421.1 114564907 4280648 complement(4461824..4462729) 1 NC_008345.1 KEGG: son:SO4114.2 hypothetical biogenesis protein MshI; biogenesis protein MshI 4462729 4280648 Sfri_3755 Shewanella frigidimarina NCIMB 400 biogenesis protein MshI YP_752421.1 4461824 R 318167 CDS YP_752422.1 114564908 4280649 complement(4462992..4464902) 1 NC_008345.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 4464902 4280649 Sfri_3756 Shewanella frigidimarina NCIMB 400 regulatory protein CsrD YP_752422.1 4462992 R 318167 CDS YP_752423.1 114564909 4280650 complement(4465106..4466353) 1 NC_008345.1 PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: son:SO4118 malate oxidoreductase, putative; malate dehydrogenase 4466353 4280650 Sfri_3757 Shewanella frigidimarina NCIMB 400 malate dehydrogenase YP_752423.1 4465106 R 318167 CDS YP_752424.1 114564910 4280651 complement(4466787..4466999) 1 NC_008345.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 4466999 rpmE 4280651 rpmE Shewanella frigidimarina NCIMB 400 50S ribosomal protein L31 YP_752424.1 4466787 R 318167 CDS YP_752425.1 114564911 4280652 complement(4467142..4468377) 1 NC_008345.1 KEGG: son:SO4121 hypothetical protein; hypothetical protein 4468377 4280652 Sfri_3759 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752425.1 4467142 R 318167 CDS YP_752426.1 114564912 4280653 complement(4468667..4469503) 1 NC_008345.1 KEGG: son:SO4121 hypothetical protein; hypothetical protein 4469503 4280653 Sfri_3760 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752426.1 4468667 R 318167 CDS YP_752427.1 114564913 4280654 4469588..4471783 1 NC_008345.1 TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO4122 primosomal protein N'; primosomal protein N' 4471783 4280654 Sfri_3761 Shewanella frigidimarina NCIMB 400 primosomal protein N' YP_752427.1 4469588 D 318167 CDS YP_752428.1 114564914 4280655 4471963..4473708 1 NC_008345.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 4473708 argS 4280655 argS Shewanella frigidimarina NCIMB 400 arginyl-tRNA synthetase YP_752428.1 4471963 D 318167 CDS YP_752429.1 114564915 4280656 4473711..4474310 1 NC_008345.1 PFAM: Sporulation domain protein; KEGG: son:SO4124 cell division protein FtsN, putative; sporulation domain-containing protein 4474310 4280656 Sfri_3763 Shewanella frigidimarina NCIMB 400 sporulation domain-containing protein YP_752429.1 4473711 D 318167 CDS YP_752430.1 114564916 4280657 4474481..4475005 1 NC_008345.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4475005 4280657 Sfri_3764 Shewanella frigidimarina NCIMB 400 ATP-dependent protease peptidase subunit YP_752430.1 4474481 D 318167 CDS YP_752431.1 114564917 4280658 4475031..4476356 1 NC_008345.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4476356 hslU 4280658 hslU Shewanella frigidimarina NCIMB 400 ATP-dependent protease ATP-binding subunit HslU YP_752431.1 4475031 D 318167 CDS YP_752432.1 114564918 4280659 4476532..4476918 1 NC_008345.1 PFAM: protein of unknown function DUF971; KEGG: son:SO4164 hypothetical protein; hypothetical protein 4476918 4280659 Sfri_3766 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752432.1 4476532 D 318167 CDS YP_752433.1 114564919 4280660 4476962..4477267 1 NC_008345.1 hypothetical protein 4477267 4280660 Sfri_3767 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752433.1 4476962 D 318167 CDS YP_752434.1 114564920 4280661 complement(4477529..4477816) 1 NC_008345.1 hypothetical protein 4477816 4280661 Sfri_3768 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752434.1 4477529 R 318167 CDS YP_752435.1 114564921 4280662 4478111..4478890 1 NC_008345.1 hypothetical protein 4478890 4280662 Sfri_3769 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752435.1 4478111 D 318167 CDS YP_752436.1 114564922 4280663 4479098..4480141 1 NC_008345.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: son:SO4548 transposase, IS110 family; transposase IS116/IS110/IS902 family protein 4480141 4280663 Sfri_3770 Shewanella frigidimarina NCIMB 400 transposase IS116/IS110/IS902 family protein YP_752436.1 4479098 D 318167 CDS YP_752437.1 114564923 4280664 complement(4480959..4483556) 1 NC_008345.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 4483556 4280664 Sfri_3771 Shewanella frigidimarina NCIMB 400 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_752437.1 4480959 R 318167 CDS YP_752438.1 114564924 4280665 4483962..4484618 1 NC_008345.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 4484618 4280665 Sfri_3772 Shewanella frigidimarina NCIMB 400 2-deoxyglucose-6-phosphatase YP_752438.1 4483962 D 318167 CDS YP_752439.1 114564925 4280666 complement(4484950..4487214) 1 NC_008345.1 PFAM: Patatin; KEGG: son:SO0428 hypothetical protein; patatin 4487214 4280666 Sfri_3773 Shewanella frigidimarina NCIMB 400 patatin YP_752439.1 4484950 R 318167 CDS YP_752440.1 114564926 4280667 complement(4487323..4491786) 1 NC_008345.1 KEGG: son:SO0427 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 4491786 4280667 Sfri_3774 Shewanella frigidimarina NCIMB 400 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_752440.1 4487323 R 318167 CDS YP_752441.1 114564927 4280668 complement(4492187..4493617) 1 NC_008345.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 4493617 4280668 Sfri_3775 Shewanella frigidimarina NCIMB 400 dihydrolipoamide dehydrogenase YP_752441.1 4492187 R 318167 CDS YP_752442.1 114564928 4280669 complement(4493817..4495814) 1 NC_008345.1 KEGG: son:SO0425 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 4495814 4280669 Sfri_3776 Shewanella frigidimarina NCIMB 400 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_752442.1 4493817 R 318167 CDS YP_752443.1 114564929 4280670 complement(4495826..4498492) 1 NC_008345.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 4498492 aceE 4280670 aceE Shewanella frigidimarina NCIMB 400 pyruvate dehydrogenase subunit E1 YP_752443.1 4495826 R 318167 CDS YP_752444.1 114564930 4280671 complement(4498584..4499336) 1 NC_008345.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 4499336 pdhR 4280671 pdhR Shewanella frigidimarina NCIMB 400 transcriptional regulator PdhR YP_752444.1 4498584 R 318167 CDS YP_752445.1 114564931 4280672 complement(4499635..4500486) 1 NC_008345.1 involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 4500486 4280672 Sfri_3779 Shewanella frigidimarina NCIMB 400 regulatory protein AmpE YP_752445.1 4499635 R 318167 CDS YP_752446.1 114564932 4280673 complement(4500612..4501166) 1 NC_008345.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: son:SO0421 AmpD protein; N-acetyl-anhydromuranmyl-L-alanine amidase 4501166 4280673 Sfri_3780 Shewanella frigidimarina NCIMB 400 N-acetyl-anhydromuranmyl-L-alanine amidase YP_752446.1 4500612 R 318167 CDS YP_752447.1 114564933 4280674 4501586..4502464 1 NC_008345.1 KEGG: ppr:PBPRA3199 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 4502464 4280674 Sfri_3781 Shewanella frigidimarina NCIMB 400 nicotinate-nucleotide pyrophosphorylase YP_752447.1 4501586 D 318167 CDS YP_752448.1 114564934 4280675 4503464..4503910 1 NC_008345.1 PFAM: Fimbrial protein pilin; methylation site containing protein; KEGG: xcb:XC_1058 pilin; methylation site containing protein 4503910 4280675 Sfri_3782 Shewanella frigidimarina NCIMB 400 methylation site containing protein YP_752448.1 4503464 D 318167 CDS YP_752449.1 114564935 4280676 4504003..4505709 1 NC_008345.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO0416 type IV pilus biogenesis protein PilB; type IV-A pilus assembly ATPase PilB 4505709 4280676 Sfri_3783 Shewanella frigidimarina NCIMB 400 type IV-A pilus assembly ATPase PilB YP_752449.1 4504003 D 318167 CDS YP_752450.1 114564936 4280677 4505817..4507076 1 NC_008345.1 PFAM: type II secretion system protein; KEGG: son:SO0415 type IV pilus biogenesis protein PilC; type II secretion system protein 4507076 4280677 Sfri_3784 Shewanella frigidimarina NCIMB 400 type II secretion system protein YP_752450.1 4505817 D 318167 CDS YP_752451.1 114564937 4280678 4507106..4508032 1 NC_008345.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: son:SO0414 leader peptidase (prepilin peptidase) / N-methyltransferase; prepilin peptidase 4508032 4280678 Sfri_3785 Shewanella frigidimarina NCIMB 400 prepilin peptidase YP_752451.1 4507106 D 318167 CDS YP_752452.1 114564938 4280679 4508029..4508658 1 NC_008345.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 4508658 coaE 4280679 coaE Shewanella frigidimarina NCIMB 400 dephospho-CoA kinase YP_752452.1 4508029 D 318167 CDS YP_752453.1 114564939 4280680 4508651..4509385 1 NC_008345.1 PFAM: protein of unknown function DUF1342; KEGG: son:SO0412 hypothetical protein; hypothetical protein 4509385 4280680 Sfri_3787 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752453.1 4508651 D 318167 CDS YP_752454.1 114564940 4280681 4509422..4509640 1 NC_008345.1 PFAM: protein of unknown function DUF329; KEGG: son:SO0411 hypothetical protein; hypothetical protein 4509640 4280681 Sfri_3788 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752454.1 4509422 D 318167 CDS YP_752455.1 114564941 4280682 4509664..4510059 1 NC_008345.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: son:SO0410 mutator mutT protein; mutator MutT protein 4510059 4280682 Sfri_3789 Shewanella frigidimarina NCIMB 400 mutator MutT protein YP_752455.1 4509664 D 318167 CDS YP_752456.1 114564942 4280683 complement(4510983..4511516) 1 NC_008345.1 KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB 4511516 4280683 Sfri_3792 Shewanella frigidimarina NCIMB 400 ISSod10, transposase OrfB YP_752456.1 4510983 R 318167 CDS YP_752457.1 114564943 4280684 complement(4511530..4512009) 1 NC_008345.1 KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA 4512009 4280684 Sfri_3793 Shewanella frigidimarina NCIMB 400 ISSod10, transposase OrfA YP_752457.1 4511530 R 318167 CDS YP_752458.1 114564944 4280685 complement(4518767..4519303) 1 NC_008345.1 KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB 4519303 4280685 Sfri_3794 Shewanella frigidimarina NCIMB 400 ISSod10, transposase OrfB YP_752458.1 4518767 R 318167 CDS YP_752459.1 114564945 4280686 complement(4519317..4519796) 1 NC_008345.1 KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA 4519796 4280686 Sfri_3795 Shewanella frigidimarina NCIMB 400 ISSod10, transposase OrfA YP_752459.1 4519317 R 318167 CDS YP_752460.1 114564946 4280687 complement(4526231..4528951) 1 NC_008345.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 4528951 4280687 Sfri_3796 Shewanella frigidimarina NCIMB 400 preprotein translocase subunit SecA YP_752460.1 4526231 R 318167 CDS YP_752461.1 114564947 4280688 complement(4529010..4529909) 1 NC_008345.1 PFAM: peptidase M23B; KEGG: son:SO4212 peptidase, M23/M37 family; peptidase M23B 4529909 4280688 Sfri_3797 Shewanella frigidimarina NCIMB 400 peptidase M23B YP_752461.1 4529010 R 318167 CDS YP_752462.1 114564948 4280689 4529937..4530389 1 NC_008345.1 KEGG: son:SO4213 hypothetical protein; hypothetical protein 4530389 4280689 Sfri_3798 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752462.1 4529937 D 318167 CDS YP_752463.1 114564949 4280690 complement(4530394..4531314) 1 NC_008345.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 4531314 lpxC 4280690 lpxC Shewanella frigidimarina NCIMB 400 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_752463.1 4530394 R 318167 CDS YP_752464.1 114564950 4280691 complement(4531525..4532691) 1 NC_008345.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 4532691 4280691 Sfri_3800 Shewanella frigidimarina NCIMB 400 cell division protein FtsZ YP_752464.1 4531525 R 318167 CDS YP_752465.1 114564951 4280692 complement(4532718..4533953) 1 NC_008345.1 PFAM: cell division protein FtsA; KEGG: son:SO4216 cell division protein FtsA; cell division protein FtsA 4533953 4280692 Sfri_3801 Shewanella frigidimarina NCIMB 400 cell division protein FtsA YP_752465.1 4532718 R 318167 CDS YP_752466.1 114564952 4280693 complement(4533950..4534720) 1 NC_008345.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: son:SO4217 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein 4534720 4280693 Sfri_3802 Shewanella frigidimarina NCIMB 400 polypeptide-transport-associated domain-containing protein YP_752466.1 4533950 R 318167 CDS YP_752467.1 114564953 4280694 complement(4534842..4536299) 1 NC_008345.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 4536299 murC 4280694 murC Shewanella frigidimarina NCIMB 400 UDP-N-acetylmuramate--L-alanine ligase YP_752467.1 4534842 R 318167 CDS YP_752468.1 114564954 4280695 complement(4536301..4537404) 1 NC_008345.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 4537404 murG 4280695 murG Shewanella frigidimarina NCIMB 400 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_752468.1 4536301 R 318167 CDS YP_752469.1 114564955 4280696 complement(4537404..4538618) 1 NC_008345.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: son:SO4220 cell division protein FtsW; cell division protein FtsW 4538618 4280696 Sfri_3805 Shewanella frigidimarina NCIMB 400 cell division protein FtsW YP_752469.1 4537404 R 318167 CDS YP_752470.1 114564956 4280697 complement(4538608..4539930) 1 NC_008345.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 4539930 murD 4280697 murD Shewanella frigidimarina NCIMB 400 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_752470.1 4538608 R 318167 CDS YP_752471.1 114564957 4280698 complement(4539953..4541035) 1 NC_008345.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 4541035 mraY 4280698 mraY Shewanella frigidimarina NCIMB 400 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_752471.1 4539953 R 318167 CDS YP_752472.1 114564958 4280699 complement(4541036..4542424) 1 NC_008345.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO4223 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 4542424 4280699 Sfri_3808 Shewanella frigidimarina NCIMB 400 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_752472.1 4541036 R 318167 CDS YP_752473.1 114564959 4280700 complement(4542421..4543911) 1 NC_008345.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 4543911 murE 4280700 murE Shewanella frigidimarina NCIMB 400 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_752473.1 4542421 R 318167 CDS YP_752474.1 114564960 4280701 complement(4543898..4545646) 1 NC_008345.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: son:SO4225 peptidoglycan synthetase FtsI; peptidoglycan glycosyltransferase 4545646 4280701 Sfri_3810 Shewanella frigidimarina NCIMB 400 peptidoglycan glycosyltransferase YP_752474.1 4543898 R 318167 CDS YP_752475.1 114564961 4280702 complement(4545658..4545972) 1 NC_008345.1 PFAM: cell division protein FtsL; KEGG: son:SO4226 cell division protein FtsL; cell division protein FtsL 4545972 4280702 Sfri_3811 Shewanella frigidimarina NCIMB 400 cell division protein FtsL YP_752475.1 4545658 R 318167 CDS YP_752476.1 114564962 4280703 complement(4545987..4546928) 1 NC_008345.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: son:SO4227 putative S-adenosyl methionine adenyltransferase; S-adenosyl-methyltransferase MraW 4546928 mraW 4280703 mraW Shewanella frigidimarina NCIMB 400 S-adenosyl-methyltransferase MraW YP_752476.1 4545987 R 318167 CDS YP_752477.1 114564963 4280704 complement(4546954..4547412) 1 NC_008345.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 4547412 4280704 Sfri_3813 Shewanella frigidimarina NCIMB 400 cell division protein MraZ YP_752477.1 4546954 R 318167 CDS YP_752478.1 114564964 4280705 4548550..4548870 1 NC_008345.1 KEGG: son:SO4229 hypothetical protein; hypothetical protein 4548870 4280705 Sfri_3814 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752478.1 4548550 D 318167 CDS YP_752479.1 114564965 4280706 complement(4548883..4550379) 1 NC_008345.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: son:SO4230 glycerol kinase; glycerol kinase 4550379 4280706 Sfri_3815 Shewanella frigidimarina NCIMB 400 glycerol kinase YP_752479.1 4548883 R 318167 CDS YP_752480.1 114564966 4280707 complement(4550575..4551927) 1 NC_008345.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO4232 long-chain fatty acid transport protein; aromatic hydrocarbon degradation membrane protein 4551927 4280707 Sfri_3816 Shewanella frigidimarina NCIMB 400 aromatic hydrocarbon degradation membrane protein YP_752480.1 4550575 R 318167 CDS YP_752481.1 114564967 4280708 complement(4552406..4553011) 1 NC_008345.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 4553011 leuD 4280708 leuD Shewanella frigidimarina NCIMB 400 isopropylmalate isomerase small subunit YP_752481.1 4552406 R 318167 CDS YP_752482.1 114564968 4280709 complement(4553031..4554443) 1 NC_008345.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 4554443 4280709 Sfri_3818 Shewanella frigidimarina NCIMB 400 isopropylmalate isomerase large subunit YP_752482.1 4553031 R 318167 CDS YP_752483.1 114564969 4280710 complement(4554443..4555537) 1 NC_008345.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 4555537 4280710 Sfri_3819 Shewanella frigidimarina NCIMB 400 3-isopropylmalate dehydrogenase YP_752483.1 4554443 R 318167 CDS YP_752484.1 114564970 4280711 complement(4555534..4557102) 1 NC_008345.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 4557102 4280711 Sfri_3820 Shewanella frigidimarina NCIMB 400 2-isopropylmalate synthase YP_752484.1 4555534 R 318167 CDS YP_752485.1 114564971 4280712 4557707..4559470 1 NC_008345.1 KEGG: son:SO4240 hypothetical protein; hypothetical protein 4559470 4280712 Sfri_3821 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752485.1 4557707 D 318167 CDS YP_752486.1 114564972 4280713 complement(4559475..4561322) 1 NC_008345.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO4241 ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase RecQ 4561322 4280713 Sfri_3822 Shewanella frigidimarina NCIMB 400 ATP-dependent DNA helicase RecQ YP_752486.1 4559475 R 318167 CDS YP_752487.1 114564973 4280714 4561524..4561988 1 NC_008345.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO4242 hypothetical protein; hypothetical protein 4561988 4280714 Sfri_3823 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752487.1 4561524 D 318167 CDS YP_752488.1 114564974 4280715 4562113..4563021 1 NC_008345.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4243 rarD protein; transporter DMT superfamily protein 4563021 4280715 Sfri_3824 Shewanella frigidimarina NCIMB 400 transporter DMT superfamily protein YP_752488.1 4562113 D 318167 CDS YP_752489.1 114564975 4280716 complement(4563137..4564456) 1 NC_008345.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 4564456 4280716 Sfri_3825 Shewanella frigidimarina NCIMB 400 N-acetylglutamate synthase YP_752489.1 4563137 R 318167 CDS YP_752490.1 114564976 4280717 complement(4564933..4565106) 1 NC_008345.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 4565106 rpmG 4280717 rpmG Shewanella frigidimarina NCIMB 400 50S ribosomal protein L33 YP_752490.1 4564933 R 318167 CDS YP_752491.1 114564977 4280718 complement(4565113..4565349) 1 NC_008345.1 required for 70S ribosome assembly; 50S ribosomal protein L28 4565349 rpmB 4280718 rpmB Shewanella frigidimarina NCIMB 400 50S ribosomal protein L28 YP_752491.1 4565113 R 318167 CDS YP_752492.1 114564978 4280719 complement(4565471..4566148) 1 NC_008345.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 4566148 radC 4280719 radC Shewanella frigidimarina NCIMB 400 DNA repair protein RadC YP_752492.1 4565471 R 318167 CDS YP_752493.1 114564979 4280720 4566645..4567847 1 NC_008345.1 KEGG: son:SO4249 DNA/pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 4567847 4280720 Sfri_3829 Shewanella frigidimarina NCIMB 400 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_752493.1 4566645 D 318167 CDS YP_752494.1 114564980 4280721 4567844..4568302 1 NC_008345.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 4568302 dut 4280721 dut Shewanella frigidimarina NCIMB 400 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_752494.1 4567844 D 318167 CDS YP_752495.1 114564981 4280722 4568338..4568931 1 NC_008345.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 4568931 slmA 4280722 slmA Shewanella frigidimarina NCIMB 400 nucleoid occlusion protein YP_752495.1 4568338 D 318167 CDS YP_752496.1 114564982 4280723 4569073..4571052 1 NC_008345.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: son:SO4252 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase 4571052 4280723 Sfri_3832 Shewanella frigidimarina NCIMB 400 peptidase S9 prolyl oligopeptidase YP_752496.1 4569073 D 318167 CDS YP_752497.1 114564983 4280724 4571310..4573259 1 NC_008345.1 PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO4252 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase 4573259 4280724 Sfri_3833 Shewanella frigidimarina NCIMB 400 peptidase S9 prolyl oligopeptidase YP_752497.1 4571310 D 318167 CDS YP_752498.1 114564984 4280725 4573438..4574088 1 NC_008345.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 4574088 folE 4280725 folE Shewanella frigidimarina NCIMB 400 GTP cyclohydrolase I YP_752498.1 4573438 D 318167 CDS YP_752499.1 114564985 4280726 complement(4574174..4574815) 1 NC_008345.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 4574815 pyrE 4280726 pyrE Shewanella frigidimarina NCIMB 400 orotate phosphoribosyltransferase YP_752499.1 4574174 R 318167 CDS YP_752500.1 114564986 4280727 complement(4574888..4575601) 1 NC_008345.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 4575601 rph 4280727 rph Shewanella frigidimarina NCIMB 400 ribonuclease PH YP_752500.1 4574888 R 318167 CDS YP_752501.1 114564987 4280728 4575779..4576642 1 NC_008345.1 TIGRFAM: conserved hypothetical protein; PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: son:SO4257 conserved hypothetical protein TIGR00255; hypothetical protein 4576642 4280728 Sfri_3837 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752501.1 4575779 D 318167 CDS YP_752502.1 114564988 4280729 4577027..4578313 1 NC_008345.1 KEGG: nfa:nfa34960 hypothetical protein; hypothetical protein 4578313 4280729 Sfri_3838 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752502.1 4577027 D 318167 CDS YP_752503.1 114564989 4280730 4578345..4580357 1 NC_008345.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: nfa:nfa34950 hypothetical protein; peptidase S15 4580357 4280730 Sfri_3839 Shewanella frigidimarina NCIMB 400 peptidase S15 YP_752503.1 4578345 D 318167 CDS YP_752504.1 114564990 4280731 4580743..4581951 1 NC_008345.1 PFAM: protein of unknown function DUF1006; KEGG: son:SO4332 hypothetical protein; hypothetical protein 4581951 4280731 Sfri_3840 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752504.1 4580743 D 318167 CDS YP_752505.1 114564991 4280732 4582173..4583489 1 NC_008345.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 4583489 4280732 Sfri_3841 Shewanella frigidimarina NCIMB 400 anaerobic C4-dicarboxylate transporter YP_752505.1 4582173 D 318167 CDS YP_752506.1 114564992 4280733 complement(4584098..4587283) 1 NC_008345.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO0368 helicase; type III restriction enzyme, res subunit 4587283 4280733 Sfri_3842 Shewanella frigidimarina NCIMB 400 type III restriction enzyme, res subunit YP_752506.1 4584098 R 318167 CDS YP_752507.1 114564993 4280734 complement(4587369..4588475) 1 NC_008345.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: son:SO0367 hypothetical protein; filamentation induced by cAMP protein fic 4588475 4280734 Sfri_3843 Shewanella frigidimarina NCIMB 400 filamentation induced by cAMP protein fic YP_752507.1 4587369 R 318167 CDS YP_752508.1 114564994 4280735 4588709..4589491 1 NC_008345.1 KEGG: son:SO0366 hypothetical protein; hypothetical protein 4589491 4280735 Sfri_3844 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752508.1 4588709 D 318167 CDS YP_752509.1 114564995 4280736 complement(4589571..4591001) 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0365 hypothetical permeases of the major facilitator superfamily; twin-arginine translocation pathway signal 4591001 4280736 Sfri_3845 Shewanella frigidimarina NCIMB 400 twin-arginine translocation pathway signal YP_752509.1 4589571 R 318167 CDS YP_752510.1 114564996 4280737 complement(4591050..4591316) 1 NC_008345.1 hypothetical protein 4591316 4280737 Sfri_3846 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752510.1 4591050 R 318167 CDS YP_752511.1 114564997 4280738 complement(4591486..4593678) 1 NC_008345.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 4593678 4280738 Sfri_3847 Shewanella frigidimarina NCIMB 400 glucosyltransferase MdoH YP_752511.1 4591486 R 318167 CDS YP_752512.1 114564998 4280739 complement(4593681..4595360) 1 NC_008345.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 4595360 mdoG 4280739 mdoG Shewanella frigidimarina NCIMB 400 glucan biosynthesis protein G YP_752512.1 4593681 R 318167 CDS YP_752513.1 114564999 4280740 4595914..4596885 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: vvy:VV1990 lactonizing lipase; alpha/beta hydrolase fold 4596885 4280740 Sfri_3849 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase fold YP_752513.1 4595914 D 318167 CDS YP_752514.1 114565000 4280741 4596891..4597889 1 NC_008345.1 KEGG: aci:ACIAD3308 lipase chaperone; lipase chaperone-like protein 4597889 4280741 Sfri_3850 Shewanella frigidimarina NCIMB 400 lipase chaperone-like protein YP_752514.1 4596891 D 318167 CDS YP_752515.1 114565001 4280742 4598671..4600806 1 NC_008345.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: vpa:VPA1656 ferric vibrioferrin receptor; TonB-dependent siderophore receptor 4600806 4280742 Sfri_3851 Shewanella frigidimarina NCIMB 400 TonB-dependent siderophore receptor YP_752515.1 4598671 D 318167 CDS YP_752516.1 114565002 4280743 complement(4601031..4602434) 1 NC_008345.1 PFAM: chemotaxis sensory transducer; KEGG: ppr:PBPRB1866 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4602434 4280743 Sfri_3852 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_752516.1 4601031 R 318167 CDS YP_752517.1 114565003 4280744 complement(4602762..4603550) 1 NC_008345.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: pha:PSHAa2408 transcriptional regulator (AraC/XylS); AraC family transcriptional regulator 4603550 4280744 Sfri_3853 Shewanella frigidimarina NCIMB 400 AraC family transcriptional regulator YP_752517.1 4602762 R 318167 CDS YP_752518.1 114565004 4280745 4603654..4604862 1 NC_008345.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa2409 permease; major facilitator transporter 4604862 4280745 Sfri_3854 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_752518.1 4603654 D 318167 CDS YP_752519.1 114565005 4280746 complement(4605045..4605593) 1 NC_008345.1 PFAM: HPP family protein; KEGG: tdn:Tmden_1127 HPP; HPP family protein 4605593 4280746 Sfri_3855 Shewanella frigidimarina NCIMB 400 HPP family protein YP_752519.1 4605045 R 318167 CDS YP_752520.1 114565006 4280747 complement(4605757..4606665) 1 NC_008345.1 KEGG: pha:PSHAb0203 putative SmvA (YddG) efflux protein; hypothetical protein 4606665 4280747 Sfri_3856 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752520.1 4605757 R 318167 CDS YP_752521.1 114565007 4280748 complement(4606677..4607504) 1 NC_008345.1 PFAM: protein of unknown function DUF548; KEGG: son:SO4658 hypothetical protein; hypothetical protein 4607504 4280748 Sfri_3857 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752521.1 4606677 R 318167 CDS YP_752522.1 114565008 4280749 4607572..4608429 1 NC_008345.1 PFAM: protein of unknown function DUF519; KEGG: son:SO4659 hypothetical protein; hypothetical protein 4608429 4280749 Sfri_3858 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752522.1 4607572 D 318167 CDS YP_752523.1 114565009 4280750 complement(4608785..4610221) 1 NC_008345.1 PFAM: peptidase M20; peptidase M28; KEGG: ilo:IL1071 probable aminopeptidase fused to fibronectin type 3 domain; peptidase M28 4610221 4280750 Sfri_3859 Shewanella frigidimarina NCIMB 400 peptidase M28 YP_752523.1 4608785 R 318167 CDS YP_752524.1 114565010 4280751 complement(4610238..4611227) 1 NC_008345.1 PFAM: Lytic transglycosylase, catalytic; KEGG: son:SO4660 transglycosylase SLT domain protein; lytic transglycosylase, catalytic 4611227 4280751 Sfri_3860 Shewanella frigidimarina NCIMB 400 lytic transglycosylase, catalytic YP_752524.1 4610238 R 318167 CDS YP_752525.1 114565011 4280752 complement(4611232..4611771) 1 NC_008345.1 KEGG: son:SO4662 lemA protein; hypothetical protein 4611771 4280752 Sfri_3861 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752525.1 4611232 R 318167 CDS YP_752526.1 114565012 4280753 complement(4612190..4615345) 1 NC_008345.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO4692 AcrB/AcrD/AcrF family protein; transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein 4615345 4280753 Sfri_3862 Shewanella frigidimarina NCIMB 400 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_752526.1 4612190 R 318167 CDS YP_752527.1 114565013 4280754 complement(4615355..4616503) 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO4693 multidrug resistance protein, AcrA/AcrE family; RND family efflux transporter MFP subunit 4616503 4280754 Sfri_3863 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_752527.1 4615355 R 318167 CDS YP_752528.1 114565014 4280755 complement(4616831..4617940) 1 NC_008345.1 KEGG: vfi:VFA0087 outer membrane protein RomA; outer membrane protein RomA 4617940 4280755 Sfri_3864 Shewanella frigidimarina NCIMB 400 outer membrane protein RomA YP_752528.1 4616831 R 318167 CDS YP_752529.1 114565015 4280756 4618037..4618654 1 NC_008345.1 PFAM: regulatory protein, TetR; KEGG: vvy:VVA1153 transcriptional regulator; transcriptional regulator, TetR family protein 4618654 4280756 Sfri_3865 Shewanella frigidimarina NCIMB 400 transcriptional regulator, TetR family protein YP_752529.1 4618037 D 318167 CDS YP_752530.1 114565016 4280757 complement(4618672..4619358) 1 NC_008345.1 KEGG: son:SO4696 hypothetical 3-methyladenine DNA glycosylase; 3-methyladenine DNA glycosylase 4619358 4280757 Sfri_3866 Shewanella frigidimarina NCIMB 400 3-methyladenine DNA glycosylase YP_752530.1 4618672 R 318167 CDS YP_752531.1 114565017 4280758 complement(4619456..4619986) 1 NC_008345.1 KEGG: son:SO4698 hypothetical protein; hypothetical protein 4619986 4280758 Sfri_3867 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752531.1 4619456 R 318167 CDS YP_752532.1 114565018 4280759 4620527..4621183 1 NC_008345.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 4621183 ribB 4280759 ribB Shewanella frigidimarina NCIMB 400 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_752532.1 4620527 D 318167 CDS YP_752533.1 114565019 4280760 complement(4621838..4622701) 1 NC_008345.1 KEGG: sru:SRU_1646 hypothetical protein; hypothetical protein 4622701 4280760 Sfri_3869 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752533.1 4621838 R 318167 CDS YP_752534.1 114565020 4280761 complement(4622717..4622926) 1 NC_008345.1 SMART: helix-turn-helix domain protein; KEGG: tcx:Tcr_2183 transcriptional regulator, XRE family; transcriptional regulator, XRE family protein 4622926 4280761 Sfri_3870 Shewanella frigidimarina NCIMB 400 transcriptional regulator, XRE family protein YP_752534.1 4622717 R 318167 CDS YP_752535.1 114565021 4280762 complement(4622926..4623507) 1 NC_008345.1 KEGG: lpp:lpp0491 hypothetical protein; hypothetical protein 4623507 4280762 Sfri_3871 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752535.1 4622926 R 318167 CDS YP_752536.1 114565022 4280763 4623840..4624196 1 NC_008345.1 PFAM: regulatory protein, MerR; KEGG: vpa:VPA1142 putative transcriptional regulator, MerR family; transcriptional regulator, MerR family protein 4624196 4280763 Sfri_3872 Shewanella frigidimarina NCIMB 400 transcriptional regulator, MerR family protein YP_752536.1 4623840 D 318167 CDS YP_752537.1 114565023 4280764 4624255..4624632 1 NC_008345.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: vpa:VPA1141 gamma-carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 4624632 4280764 Sfri_3873 Shewanella frigidimarina NCIMB 400 carboxymuconolactone decarboxylase YP_752537.1 4624255 D 318167 CDS YP_752538.1 114565024 4280765 complement(4624770..4626809) 1 NC_008345.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO4699 oligopeptidase A; oligopeptidase A 4626809 4280765 Sfri_3874 Shewanella frigidimarina NCIMB 400 oligopeptidase A YP_752538.1 4624770 R 318167 CDS YP_752539.1 114565025 4280766 4627162..4627941 1 NC_008345.1 KEGG: son:SO4700 hypothetical protein; hypothetical protein 4627941 4280766 Sfri_3875 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752539.1 4627162 D 318167 CDS YP_752540.1 114565026 4280767 4628020..4628550 1 NC_008345.1 KEGG: son:SO4701 hypothetical protein; hypothetical protein 4628550 4280767 Sfri_3876 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752540.1 4628020 D 318167 CDS YP_752541.1 114565027 4280768 4628628..4629983 1 NC_008345.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 4629983 4280768 Sfri_3877 Shewanella frigidimarina NCIMB 400 glutathione reductase YP_752541.1 4628628 D 318167 CDS YP_752542.1 114565028 4280769 complement(4630202..4631236) 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: bja:bll1855 putative transposase; integrase catalytic subunit 4631236 4280769 Sfri_3878 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_752542.1 4630202 R 318167 CDS YP_752543.1 114565029 4280770 complement(4631273..4632874) 1 NC_008345.1 PFAM: sodium/sulphate symporter; KEGG: bpe:BP0380 putative sodium:sulfate symportert; sodium/sulfate symporter 4632874 4280770 Sfri_3879 Shewanella frigidimarina NCIMB 400 sodium/sulfate symporter YP_752543.1 4631273 R 318167 CDS YP_752544.1 114565030 4280771 4633200..4633835 1 NC_008345.1 hypothetical protein 4633835 4280771 Sfri_3880 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752544.1 4633200 D 318167 CDS YP_752545.1 114565031 4280772 4633893..4634363 1 NC_008345.1 PFAM: adenylate cyclase; KEGG: bfs:BF0324 hypothetical protein; adenylate cyclase 4634363 4280772 Sfri_3881 Shewanella frigidimarina NCIMB 400 adenylate cyclase YP_752545.1 4633893 D 318167 CDS YP_752546.1 114565032 4280773 4635124..4636470 1 NC_008345.1 PFAM: phosphate-selective porin O and P; KEGG: noc:Noc_2418 phosphate-selective porin O and P; phosphate-selective porin O and P 4636470 4280773 Sfri_3882 Shewanella frigidimarina NCIMB 400 phosphate-selective porin O and P YP_752546.1 4635124 D 318167 CDS YP_752547.1 114565033 4280774 4636483..4637310 1 NC_008345.1 hypothetical protein 4637310 4280774 Sfri_3883 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752547.1 4636483 D 318167 CDS YP_752548.1 114565034 4280775 4637392..4638060 1 NC_008345.1 PFAM: protein of unknown function DUF47; KEGG: tma:TM0914 hypothetical protein; hypothetical protein 4638060 4280775 Sfri_3884 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752548.1 4637392 D 318167 CDS YP_752549.1 114565035 4280776 4638072..4639115 1 NC_008345.1 PFAM: phosphate transporter; KEGG: tma:TM0917 phosphate permease, putative; phosphate transporter 4639115 4280776 Sfri_3885 Shewanella frigidimarina NCIMB 400 phosphate transporter YP_752549.1 4638072 D 318167 CDS YP_752550.1 114565036 4280777 complement(4639219..4639524) 1 NC_008345.1 KEGG: cps:CPS_1942 hypothetical protein; hypothetical protein 4639524 4280777 Sfri_3886 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752550.1 4639219 R 318167 CDS YP_752551.1 114565037 4280778 complement(4639521..4642574) 1 NC_008345.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cps:CPS_1943 cation efflux system protein CzcA; heavy metal efflux pump, CzcA family protein 4642574 4280778 Sfri_3887 Shewanella frigidimarina NCIMB 400 heavy metal efflux pump, CzcA family protein YP_752551.1 4639521 R 318167 CDS YP_752552.1 114565038 4280779 complement(4642576..4643604) 1 NC_008345.1 KEGG: cps:CPS_1944 hypothetical protein; hypothetical protein 4643604 4280779 Sfri_3888 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752552.1 4642576 R 318167 CDS YP_752553.1 114565039 4280780 complement(4643601..4644905) 1 NC_008345.1 KEGG: ilo:IL0061 outer membrane protein; hypothetical protein 4644905 4280780 Sfri_3889 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752553.1 4643601 R 318167 CDS YP_752554.1 114565040 4280781 4644973..4645497 1 NC_008345.1 PFAM: regulatory protein, LuxR; KEGG: cps:CPS_1945 hypothetical protein; transcriptional regulator, LuxR family protein 4645497 4280781 Sfri_3890 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LuxR family protein YP_752554.1 4644973 D 318167 CDS YP_752555.1 114565041 4280782 complement(4645694..4646347) 1 NC_008345.1 putative transcriptional regulator, TetR family protein 4646347 4280782 Sfri_3891 Shewanella frigidimarina NCIMB 400 putative transcriptional regulator, TetR family protein YP_752555.1 4645694 R 318167 CDS YP_752556.1 114565042 4280783 4646469..4647335 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ret:RHE_CH02498 probable transcriptional regulator protein, LysR family; transcriptional regulator, LysR family protein 4647335 4280783 Sfri_3892 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_752556.1 4646469 D 318167 CDS YP_752557.1 114565043 4280784 complement(4647426..4648727) 1 NC_008345.1 TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter; KEGG: vfi:VF2354 anaerobic C4-dicarboxylate transporter; anaerobic c4-dicarboxylate antiporter 4648727 4280784 Sfri_3893 Shewanella frigidimarina NCIMB 400 anaerobic c4-dicarboxylate antiporter YP_752557.1 4647426 R 318167 CDS YP_752558.1 114565044 4280785 complement(4649032..4650159) 1 NC_008345.1 KEGG: son:SO1412 hypothetical protein; hypothetical protein 4650159 4280785 Sfri_3894 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752558.1 4649032 R 318167 CDS YP_752559.1 114565045 4280786 complement(4650200..4651453) 1 NC_008345.1 hypothetical protein 4651453 4280786 Sfri_3895 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752559.1 4650200 R 318167 CDS YP_752560.1 114565046 4280787 complement(4651762..4652115) 1 NC_008345.1 KEGG: son:SO3623 tetraheme cytochrome c; tetraheme cytochrome c 4652115 4280787 Sfri_3896 Shewanella frigidimarina NCIMB 400 tetraheme cytochrome c YP_752560.1 4651762 R 318167 CDS YP_752561.1 114565047 4280788 complement(4652144..4653664) 1 NC_008345.1 TIGRFAM: Twin-arginine translocation pathway signal; flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO3624 flavocytochrome c flavin subunit; flavocytochrome c 4653664 4280788 Sfri_3897 Shewanella frigidimarina NCIMB 400 flavocytochrome c YP_752561.1 4652144 R 318167 CDS YP_752562.1 114565048 4280789 4653921..4654853 1 NC_008345.1 KEGG: cps:CPS_3986 hypothetical protein; hypothetical protein 4654853 4280789 Sfri_3898 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752562.1 4653921 D 318167 CDS YP_752563.1 114565049 4280790 4655033..4655842 1 NC_008345.1 PFAM: protein of unknown function DUF347; KEGG: mlo:mlr4456 putative integral membrane protein; hypothetical protein 4655842 4280790 Sfri_3899 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752563.1 4655033 D 318167 CDS YP_752564.1 114565050 4280791 4655868..4656626 1 NC_008345.1 PFAM: protein of unknown function DUF347; KEGG: dar:Daro_2299 protein of unknown function DUF347; hypothetical protein 4656626 4280791 Sfri_3900 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752564.1 4655868 D 318167 CDS YP_752565.1 114565051 4280792 4656670..4657347 1 NC_008345.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dar:Daro_2298 response regulator receiver:transcriptional regulatory protein, C-terminal; two component transcriptional regulator, winged helix family protein 4657347 4280792 Sfri_3901 Shewanella frigidimarina NCIMB 400 two component transcriptional regulator, winged helix family protein YP_752565.1 4656670 D 318167 CDS YP_752566.1 114565052 4280793 4657311..4658651 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: bur:Bcep18194_A5020 periplasmic sensor signal transduction histidine kinase; periplasmic sensor signal transduction histidine kinase 4658651 4280793 Sfri_3902 Shewanella frigidimarina NCIMB 400 periplasmic sensor signal transduction histidine kinase YP_752566.1 4657311 D 318167 CDS YP_752567.1 114565053 4280794 complement(4658728..4660263) 1 NC_008345.1 PFAM: helix-turn-helix domain protein; KEGG: son:SO4705 transcriptional regulator, putative; transcriptional regulator, XRE family protein 4660263 4280794 Sfri_3903 Shewanella frigidimarina NCIMB 400 transcriptional regulator, XRE family protein YP_752567.1 4658728 R 318167 CDS YP_752568.1 114565054 4280795 4660411..4660929 1 NC_008345.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4660929 4280795 Sfri_3904 Shewanella frigidimarina NCIMB 400 malate synthase YP_752568.1 4660411 D 318167 CDS YP_752569.1 114565055 4280796 complement(4661078..4662541) 1 NC_008345.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO3660.1 hypothetical ferredoxin; 4Fe-4S ferredoxin 4662541 4280796 Sfri_3905 Shewanella frigidimarina NCIMB 400 4Fe-4S ferredoxin YP_752569.1 4661078 R 318167 CDS YP_752570.1 114565056 4280797 complement(4662715..4664157) 1 NC_008345.1 KEGG: son:SO3660 sigma-54 dependent transcriptional regulator/sensory box protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AAA ATPase; transcriptional regulator, Fis family protein 4664157 4280797 Sfri_3906 Shewanella frigidimarina NCIMB 400 transcriptional regulator, Fis family protein YP_752570.1 4662715 R 318167 CDS YP_752571.1 114565057 4280798 complement(4664334..4664900) 1 NC_008345.1 PFAM: Paraquat-inducible protein A; KEGG: son:SO4710 hypothetical protein; paraquat-inducible protein A 4664900 4280798 Sfri_3907 Shewanella frigidimarina NCIMB 400 paraquat-inducible protein A YP_752571.1 4664334 R 318167 CDS YP_752572.1 114565058 4280799 4665127..4665798 1 NC_008345.1 KEGG: psp:PSPPH_3940 hypothetical protein; hypothetical protein 4665798 4280799 Sfri_3908 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752572.1 4665127 D 318167 CDS YP_752573.1 114565059 4280800 4665800..4668130 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: ilo:IL0935 signaling protein with a sensor domain, HAMP, GGDEF and EAL domains; diguanylate cyclase/phosphodiesterase 4668130 4280800 Sfri_3909 Shewanella frigidimarina NCIMB 400 diguanylate cyclase/phosphodiesterase YP_752573.1 4665800 D 318167 CDS YP_752574.1 114565060 4280801 4668130..4668972 1 NC_008345.1 KEGG: ilo:IL0934 hypothetical protein; hypothetical protein 4668972 4280801 Sfri_3910 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752574.1 4668130 D 318167 CDS YP_752575.1 114565061 4280802 4668972..4669403 1 NC_008345.1 PFAM: globin; KEGG: pha:PSHAa0458 protozoan/cyanobacterial globin protein; globin 4669403 4280802 Sfri_3911 Shewanella frigidimarina NCIMB 400 globin YP_752575.1 4668972 D 318167 CDS YP_752576.1 114565062 4280803 complement(4669435..4670628) 1 NC_008345.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO4711 HD domain protein; metal dependent phosphohydrolase 4670628 4280803 Sfri_3912 Shewanella frigidimarina NCIMB 400 metal dependent phosphohydrolase YP_752576.1 4669435 R 318167 CDS YP_752577.1 114565063 4280804 4670949..4672331 1 NC_008345.1 TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: son:SO4713 menaquinone-specific isochorismate synthase, putative; isochorismate synthase 4672331 4280804 Sfri_3913 Shewanella frigidimarina NCIMB 400 isochorismate synthase YP_752577.1 4670949 D 318167 CDS YP_752578.1 114565064 4280805 4672636..4673316 1 NC_008345.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: son:SO4715 hypothetical protein; hypothetical protein 4673316 4280805 Sfri_3914 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752578.1 4672636 D 318167 CDS YP_752579.1 114565065 4280806 complement(4674010..4676154) 1 NC_008345.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4717 sensor histidine kinase; sensor signal transduction histidine kinase 4676154 4280806 Sfri_3915 Shewanella frigidimarina NCIMB 400 sensor signal transduction histidine kinase YP_752579.1 4674010 R 318167 CDS YP_752580.1 114565066 4280807 complement(4676157..4677545) 1 NC_008345.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO4718 sigma-54 dependent response regulator; Fis family two component sigma-54-specific transcriptional regulator 4677545 4280807 Sfri_3916 Shewanella frigidimarina NCIMB 400 Fis family two component sigma-54-specific transcriptional regulator YP_752580.1 4676157 R 318167 CDS YP_752581.1 114565067 4280808 4677840..4678664 1 NC_008345.1 KEGG: son:SO4719 putative sulfate transport system substrate-binding protein; putative sulfate transport system substrate-binding protein 4678664 4280808 Sfri_3917 Shewanella frigidimarina NCIMB 400 putative sulfate transport system substrate-binding protein YP_752581.1 4677840 D 318167 CDS YP_752582.1 114565068 4280809 4678661..4679368 1 NC_008345.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4720 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4679368 4280809 Sfri_3918 Shewanella frigidimarina NCIMB 400 binding-protein-dependent transport system inner membrane protein YP_752582.1 4678661 D 318167 CDS YP_752583.1 114565069 4280810 4679370..4680119 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4721 ABC transporter, ATP-binding protein; ABC transporter 4680119 4280810 Sfri_3919 Shewanella frigidimarina NCIMB 400 ABC transporter YP_752583.1 4679370 D 318167 CDS YP_752584.1 114565070 4280811 4680103..4680693 1 NC_008345.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: son:SO4722 molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein A 4680693 4280811 Sfri_3920 Shewanella frigidimarina NCIMB 400 molybdopterin-guanine dinucleotide biosynthesis protein A YP_752584.1 4680103 D 318167 CDS YP_752585.1 114565071 4280812 4680711..4682528 1 NC_008345.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin binding domain; molybdopterin-guanine dinucleotide biosynthesis MobB region; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: son:SO4723 molybdopterin biosynthesis MoeA protein, putative; putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA 4682528 4280812 Sfri_3921 Shewanella frigidimarina NCIMB 400 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA YP_752585.1 4680711 D 318167 CDS YP_752586.1 114565072 4280813 4682537..4683523 1 NC_008345.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 4683523 4280813 Sfri_3922 Shewanella frigidimarina NCIMB 400 molybdenum cofactor biosynthesis protein A YP_752586.1 4682537 D 318167 CDS YP_752587.1 114565073 4280814 4683630..4684088 1 NC_008345.1 KEGG: son:SO4725 hypothetical protein; hypothetical protein 4684088 4280814 Sfri_3923 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752587.1 4683630 D 318167 CDS YP_752588.1 114565074 4280815 4684098..4684913 1 NC_008345.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 4684913 4280815 Sfri_3924 Shewanella frigidimarina NCIMB 400 formamidopyrimidine-DNA glycosylase YP_752588.1 4684098 D 318167 CDS YP_752589.1 114565075 4280816 complement(4685008..4686507) 1 NC_008345.1 KEGG: son:SO4685 hypothetical protein; hypothetical protein 4686507 4280816 Sfri_3925 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752589.1 4685008 R 318167 CDS YP_752590.1 114565076 4280817 complement(4686512..4687018) 1 NC_008345.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 4687018 coaD 4280817 coaD Shewanella frigidimarina NCIMB 400 phosphopantetheine adenylyltransferase YP_752590.1 4686512 R 318167 CDS YP_752591.1 114565077 4280818 complement(4687124..4687876) 1 NC_008345.1 PFAM: glycosyl transferase, family 25; KEGG: msu:MS0446 glycosyltransferase involved in LPS biosynthesis; glycosyl transferase family protein 4687876 4280818 Sfri_3927 Shewanella frigidimarina NCIMB 400 glycosyl transferase family protein YP_752591.1 4687124 R 318167 CDS YP_752592.1 114565078 4280819 4688380..4689381 1 NC_008345.1 KEGG: hit:NTHI0649 ADP-heptose--lipooligosaccharide heptosyltransferase III; ADP-heptose--LPS heptosyltransferase III 4689381 4280819 Sfri_3928 Shewanella frigidimarina NCIMB 400 ADP-heptose--LPS heptosyltransferase III YP_752592.1 4688380 D 318167 CDS YP_752593.1 114565079 4280820 4689438..4690391 1 NC_008345.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: pca:Pcar_0024 ADP-L-glycero-D-mannoheptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 4690391 4280820 Sfri_3929 Shewanella frigidimarina NCIMB 400 ADP-L-glycero-D-manno-heptose-6-epimerase YP_752593.1 4689438 D 318167 CDS YP_752594.1 114565080 4280821 complement(4690492..4690884) 1 NC_008345.1 TIGRFAM: cytidyltransferase-related domain; PFAM: cytidylyltransferase; KEGG: cps:CPS_4205 glycerol-3-phosphate cytidyltransferase; cytidyltransferase-like protein 4690884 4280821 Sfri_3930 Shewanella frigidimarina NCIMB 400 cytidyltransferase-like protein YP_752594.1 4690492 R 318167 CDS YP_752595.1 114565081 4280822 complement(4690893..4691951) 1 NC_008345.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: gox:GOX2059 hypothetical protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 4691951 4280822 Sfri_3931 Shewanella frigidimarina NCIMB 400 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_752595.1 4690893 R 318167 CDS YP_752596.1 114565082 4280823 4692170..4693285 1 NC_008345.1 KEGG: reu:Reut_A2557 glycosyl transferase, family 9; ADP-heptose--LPS heptosyltransferase-like protein 4693285 4280823 Sfri_3932 Shewanella frigidimarina NCIMB 400 ADP-heptose--LPS heptosyltransferase-like protein YP_752596.1 4692170 D 318167 CDS YP_752597.1 114565083 4280824 4693327..4694175 1 NC_008345.1 PFAM: glycosyl transferase, family 8; glycosyl transferase family protein 4694175 4280824 Sfri_3933 Shewanella frigidimarina NCIMB 400 glycosyl transferase family protein YP_752597.1 4693327 D 318167 CDS YP_752598.1 114565084 4280825 complement(4694218..4695249) 1 NC_008345.1 PFAM: glycosyl transferase, family 9; KEGG: son:SO4678 heptosyl transferase, glycosyltransferase family 9 protein; glycosyl transferase family protein 4695249 4280825 Sfri_3934 Shewanella frigidimarina NCIMB 400 glycosyl transferase family protein YP_752598.1 4694218 R 318167 CDS YP_752599.1 114565085 4280826 4695360..4696088 1 NC_008345.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 4696088 4280826 Sfri_3935 Shewanella frigidimarina NCIMB 400 3-deoxy-D-manno-octulosonic-acid kinase YP_752599.1 4695360 D 318167 CDS YP_752600.1 114565086 4280827 complement(4696178..4697440) 1 NC_008345.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: son:SO4676 3-deoxy-D-manno-octulosonic-acid (KDO) transferase; 3-deoxy-D-manno-octulosonic-acid transferase 4697440 4280827 Sfri_3936 Shewanella frigidimarina NCIMB 400 3-deoxy-D-manno-octulosonic-acid transferase YP_752600.1 4696178 R 318167 CDS YP_752601.1 114565087 4280828 4697558..4698220 1 NC_008345.1 PFAM: regulatory protein, TetR; KEGG: son:SO4675 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein 4698220 4280828 Sfri_3937 Shewanella frigidimarina NCIMB 400 transcriptional regulator, TetR family protein YP_752601.1 4697558 D 318167 CDS YP_752602.1 114565088 4280829 4698548..4699741 1 NC_008345.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 4699741 4280829 Sfri_3938 Shewanella frigidimarina NCIMB 400 2-amino-3-ketobutyrate coenzyme A ligase YP_752602.1 4698548 D 318167 CDS YP_752603.1 114565089 4280830 4699828..4700853 1 NC_008345.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 4700853 tdh 4280830 tdh Shewanella frigidimarina NCIMB 400 L-threonine 3-dehydrogenase YP_752603.1 4699828 D 318167 CDS YP_752604.1 114565090 4280831 4700979..4701287 1 NC_008345.1 PFAM: Rhodanese domain protein; KEGG: son:SO4672 glpE protein; rhodanese domain-containing protein 4701287 4280831 Sfri_3940 Shewanella frigidimarina NCIMB 400 rhodanese domain-containing protein YP_752604.1 4700979 D 318167 CDS YP_752605.1 114565091 4280832 4701284..4702135 1 NC_008345.1 PFAM: Rhomboid family protein; KEGG: son:SO4671 glpG protein; rhomboid family protein 4702135 4280832 Sfri_3941 Shewanella frigidimarina NCIMB 400 rhomboid family protein YP_752605.1 4701284 D 318167 CDS YP_752606.1 114565092 4280833 complement(4702218..4702871) 1 NC_008345.1 PFAM: ThiJ/PfpI domain protein; KEGG: son:SO4670 enhancing lycopene biosynthesis protein; isoprenoid biosynthesis protein with amidotransferase-like domain 4702871 4280833 Sfri_3942 Shewanella frigidimarina NCIMB 400 isoprenoid biosynthesis protein with amidotransferase-like domain YP_752606.1 4702218 R 318167 CDS YP_752607.1 114565093 4280834 4703403..4706159 1 NC_008345.1 KEGG: son:SO4669 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I 4706159 4280834 Sfri_3943 Shewanella frigidimarina NCIMB 400 DNA polymerase I YP_752607.1 4703403 D 318167 CDS YP_752608.1 114565094 4280835 complement(4706897..4707571) 1 NC_008345.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 4707571 engB 4280835 engB Shewanella frigidimarina NCIMB 400 ribosome biogenesis GTP-binding protein YsxC YP_752608.1 4706897 R 318167 CDS YP_752609.1 114565095 4280836 4707835..4708458 1 NC_008345.1 PFAM: cytochrome c, class I; KEGG: son:SO4666 cytochrome c; cytochrome c, class I 4708458 4280836 Sfri_3945 Shewanella frigidimarina NCIMB 400 cytochrome c, class I YP_752609.1 4707835 D 318167 CDS YP_752610.1 114565096 4280837 4709299..4709961 1 NC_008345.1 KEGG: son:SO4727 hypothetical protein; hypothetical protein 4709961 4280837 Sfri_3946 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752610.1 4709299 D 318167 CDS YP_752611.1 114565097 4280838 4710017..4710565 1 NC_008345.1 KEGG: son:SO4728 hypothetical protein; hypothetical protein 4710565 4280838 Sfri_3947 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752611.1 4710017 D 318167 CDS YP_752612.1 114565098 4280839 4710661..4711128 1 NC_008345.1 KEGG: son:SO4729 hypothetical protein; hypothetical protein 4711128 4280839 Sfri_3948 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752612.1 4710661 D 318167 CDS YP_752613.1 114565099 4280840 4711490..4712044 1 NC_008345.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0123 acyltransferase family protein; phospholipid/glycerol acyltransferase 4712044 4280840 Sfri_3949 Shewanella frigidimarina NCIMB 400 phospholipid/glycerol acyltransferase YP_752613.1 4711490 D 318167 CDS YP_752614.1 114565100 4280841 complement(4712143..4713567) 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; KEGG: bha:BH2279 hypothetical protein; alpha/beta hydrolase 4713567 4280841 Sfri_3950 Shewanella frigidimarina NCIMB 400 alpha/beta hydrolase YP_752614.1 4712143 R 318167 CDS YP_752615.1 114565101 4280842 complement(4713643..4714911) 1 NC_008345.1 PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0121 hypothetical small-conductance mechanosensitive channel; MscS mechanosensitive ion channel 4714911 4280842 Sfri_3951 Shewanella frigidimarina NCIMB 400 MscS mechanosensitive ion channel YP_752615.1 4713643 R 318167 CDS YP_752616.1 114565102 4280843 complement(4715257..4716795) 1 NC_008345.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 4716795 4280843 Sfri_3952 Shewanella frigidimarina NCIMB 400 histidine ammonia-lyase YP_752616.1 4715257 R 318167 CDS YP_752617.1 114565103 4280844 complement(4716799..4718469) 1 NC_008345.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 4718469 4280844 Sfri_3953 Shewanella frigidimarina NCIMB 400 urocanate hydratase YP_752617.1 4716799 R 318167 CDS YP_752618.1 114565104 4280845 complement(4718565..4719308) 1 NC_008345.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: son:SO0096 histidine utilization repressor; transcriptional regulator, histidine utilization repressor, GntR family protein 4719308 4280845 Sfri_3954 Shewanella frigidimarina NCIMB 400 transcriptional regulator, histidine utilization repressor, GntR family protein YP_752618.1 4718565 R 318167 CDS YP_752619.1 114565105 4280846 4719406..4720638 1 NC_008345.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 4720638 4280846 Sfri_3955 Shewanella frigidimarina NCIMB 400 imidazolonepropionase YP_752619.1 4719406 D 318167 CDS YP_752620.1 114565106 4280847 4720958..4721740 1 NC_008345.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pha:PSHAa1832 cryptic haloacid dehalogenase 1 (partial); haloacid dehalogenase, type II 4721740 4280847 Sfri_3956 Shewanella frigidimarina NCIMB 400 haloacid dehalogenase, type II YP_752620.1 4720958 D 318167 CDS YP_752621.1 114565107 4280848 4721921..4723582 1 NC_008345.1 PFAM: Amidohydrolase 3; KEGG: cps:CPS_2795 amidohydrolase family protein; amidohydrolase 3 4723582 4280848 Sfri_3957 Shewanella frigidimarina NCIMB 400 amidohydrolase 3 YP_752621.1 4721921 D 318167 CDS YP_752622.1 114565108 4280849 4723737..4724009 1 NC_008345.1 KEGG: son:SO0637 hypothetical protein; hypothetical protein 4724009 4280849 Sfri_3958 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752622.1 4723737 D 318167 CDS YP_752623.1 114565109 4280850 4724009..4724503 1 NC_008345.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vvu:VV12537 putative acetyltransferase; N-acetyltransferase GCN5 4724503 4280850 Sfri_3959 Shewanella frigidimarina NCIMB 400 N-acetyltransferase GCN5 YP_752623.1 4724009 D 318167 CDS YP_752624.1 114565110 4280851 complement(4724855..4725682) 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: xcv:XCV3412 ISxac2 transposase; integrase catalytic subunit 4725682 4280851 Sfri_3960 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_752624.1 4724855 R 318167 CDS YP_752625.1 114565111 4280852 complement(4725676..4725942) 1 NC_008345.1 PFAM: transposase IS3/IS911 family protein; KEGG: son:SO4268 ISSod2, transposase OrfA; transposase IS3/IS911 family protein 4725942 4280852 Sfri_3961 Shewanella frigidimarina NCIMB 400 transposase IS3/IS911 family protein YP_752625.1 4725676 R 318167 CDS YP_752626.1 114565112 4280853 complement(4725978..4726481) 1 NC_008345.1 hypothetical protein 4726481 4280853 Sfri_3962 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752626.1 4725978 R 318167 CDS YP_752627.1 114565113 4280854 complement(4726988..4727227) 1 NC_008345.1 KEGG: son:SO3280 hypothetical protein; hypothetical protein 4727227 4280854 Sfri_3963 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752627.1 4726988 R 318167 CDS YP_752628.1 114565114 4280855 4727409..4729274 1 NC_008345.1 PFAM: protein of unknown function DUF885; KEGG: cps:CPS_3202 putative lipoprotein; hypothetical protein 4729274 4280855 Sfri_3964 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752628.1 4727409 D 318167 CDS YP_752629.1 114565115 4280856 complement(4729417..4730622) 1 NC_008345.1 KEGG: ilo:IL2526 predicted hydrolase of the alpha/beta superfamily; hypothetical protein 4730622 4280856 Sfri_3965 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752629.1 4729417 R 318167 CDS YP_752630.1 114565116 4280857 4730835..4731515 1 NC_008345.1 TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0084 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4731515 4280857 Sfri_3966 Shewanella frigidimarina NCIMB 400 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_752630.1 4730835 D 318167 CDS YP_752631.1 114565117 4280858 complement(4731581..4732606) 1 NC_008345.1 KEGG: son:SO2207 hypothetical protein; hypothetical protein 4732606 4280858 Sfri_3967 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752631.1 4731581 R 318167 CDS YP_752632.1 114565118 4280859 4732744..4733166 1 NC_008345.1 PFAM: thioesterase superfamily protein; KEGG: son:SO0080 hypothetical 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 4733166 4280859 Sfri_3968 Shewanella frigidimarina NCIMB 400 thioesterase superfamily protein YP_752632.1 4732744 D 318167 CDS YP_752633.1 114565119 4280860 4733233..4733490 1 NC_008345.1 KEGG: son:SO0079 hypothetical protein; hypothetical protein 4733490 4280860 Sfri_3969 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752633.1 4733233 D 318167 CDS YP_752634.1 114565120 4280861 complement(4733511..4733978) 1 NC_008345.1 PFAM: thioesterase superfamily protein; KEGG: son:SO0077 hypothetical 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 4733978 4280861 Sfri_3970 Shewanella frigidimarina NCIMB 400 thioesterase superfamily protein YP_752634.1 4733511 R 318167 CDS YP_752635.1 114565121 4280862 complement(4734204..4734719) 1 NC_008345.1 hypothetical protein 4734719 4280862 Sfri_3971 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752635.1 4734204 R 318167 CDS YP_752636.1 114565122 4280863 complement(4734719..4735660) 1 NC_008345.1 KEGG: pfl:PFL_0585 hypothetical protein; hypothetical protein 4735660 4280863 Sfri_3972 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752636.1 4734719 R 318167 CDS YP_752637.1 114565123 4280864 complement(4735787..4737580) 1 NC_008345.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0075 AMP-binding family protein; AMP-dependent synthetase and ligase 4737580 4280864 Sfri_3973 Shewanella frigidimarina NCIMB 400 AMP-dependent synthetase and ligase YP_752637.1 4735787 R 318167 CDS YP_752638.1 114565124 4280865 complement(4737707..4738999) 1 NC_008345.1 KEGG: son:SO0074 hypothetical protein; hypothetical protein 4738999 4280865 Sfri_3974 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752638.1 4737707 R 318167 CDS YP_752639.1 114565125 4280866 complement(4738996..4739865) 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0073 ABC transporter, ATP-binding protein; ABC transporter 4739865 4280866 Sfri_3975 Shewanella frigidimarina NCIMB 400 ABC transporter YP_752639.1 4738996 R 318167 CDS YP_752640.1 114565126 4280867 complement(4739911..4740288) 1 NC_008345.1 PFAM: regulatory protein GntR, HTH; KEGG: son:SO0072 transcriptional regulator, GntR family; transcriptional regulator, GntR family protein 4740288 4280867 Sfri_3976 Shewanella frigidimarina NCIMB 400 transcriptional regulator, GntR family protein YP_752640.1 4739911 R 318167 CDS YP_752641.1 114565127 4280868 4740383..4741981 1 NC_008345.1 PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: son:SO0071 hydrolase, alpha/beta hydrolase fold family; TAP domain-containing protein 4741981 4280868 Sfri_3977 Shewanella frigidimarina NCIMB 400 TAP domain-containing protein YP_752641.1 4740383 D 318167 CDS YP_752642.1 114565128 4280869 4741984..4742718 1 NC_008345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0070 ATP-binding transport protein NatA; ABC transporter 4742718 4280869 Sfri_3978 Shewanella frigidimarina NCIMB 400 ABC transporter YP_752642.1 4741984 D 318167 CDS YP_752643.1 114565129 4280870 4742718..4743851 1 NC_008345.1 PFAM: ABC-2 type transporter; KEGG: son:SO0069 transport protein, putative; ABC-2 type transporter 4743851 4280870 Sfri_3979 Shewanella frigidimarina NCIMB 400 ABC-2 type transporter YP_752643.1 4742718 D 318167 CDS YP_752644.1 114565130 4280871 4744004..4744228 1 NC_008345.1 KEGG: son:SO0068 hypothetical protein; hypothetical protein 4744228 4280871 Sfri_3980 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752644.1 4744004 D 318167 CDS YP_752645.1 114565131 4280872 complement(4744281..4745843) 1 NC_008345.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; CHASE4 domain protein; KEGG: vch:VC2285 GGDEF family protein; diguanylate cyclase 4745843 4280872 Sfri_3981 Shewanella frigidimarina NCIMB 400 diguanylate cyclase YP_752645.1 4744281 R 318167 CDS YP_752646.1 114565132 4280873 complement(4746064..4746597) 1 NC_008345.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 4746597 mogA 4280873 mogA Shewanella frigidimarina NCIMB 400 molybdenum cofactor biosynthesis protein MogA YP_752646.1 4746064 R 318167 CDS YP_752647.1 114565133 4280874 4746915..4747412 1 NC_008345.1 PFAM: methylation site containing protein; KEGG: son:SO4105 MSHA pilin protein MshA; methylation site containing protein 4747412 4280874 Sfri_3983 Shewanella frigidimarina NCIMB 400 methylation site containing protein YP_752647.1 4746915 D 318167 CDS YP_752648.1 114565134 4280875 complement(4747523..4748158) 1 NC_008345.1 PFAM: regulatory protein, TetR; KEGG: son:SO3494 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein 4748158 4280875 Sfri_3984 Shewanella frigidimarina NCIMB 400 transcriptional regulator, TetR family protein YP_752648.1 4747523 R 318167 CDS YP_752649.1 114565135 4280876 4748570..4749802 1 NC_008345.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3493 RND multidrug efflux membrane fusion protein MexE; RND family efflux transporter MFP subunit 4749802 4280876 Sfri_3985 Shewanella frigidimarina NCIMB 400 RND family efflux transporter MFP subunit YP_752649.1 4748570 D 318167 CDS YP_752650.1 114565136 4280877 4749815..4752976 1 NC_008345.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO3492 RND multidrug efflux transporter MexF; transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein 4752976 4280877 Sfri_3986 Shewanella frigidimarina NCIMB 400 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_752650.1 4749815 D 318167 CDS YP_752651.1 114565137 4280878 complement(4753067..4754026) 1 NC_008345.1 PFAM: PfkB domain protein; KEGG: cps:CPS_2648 carbohydrate kinase, PfkB family; ribokinase-like domain-containing protein 4754026 4280878 Sfri_3987 Shewanella frigidimarina NCIMB 400 ribokinase-like domain-containing protein YP_752651.1 4753067 R 318167 CDS YP_752652.1 114565138 4280879 complement(4754160..4756556) 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC1136 TonB-dependent receptor; TonB-dependent receptor 4756556 4280879 Sfri_3988 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor YP_752652.1 4754160 R 318167 CDS YP_752653.1 114565139 4280880 complement(4756825..4758045) 1 NC_008345.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC1133 transporter, putative; major facilitator transporter 4758045 4280880 Sfri_3989 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_752653.1 4756825 R 318167 CDS YP_752654.1 114565140 4280881 4758234..4759715 1 NC_008345.1 KEGG: atc:AGR_pTi_251 sucrose phosphorylase SplA; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; sucrose phosphorylase 4759715 4280881 Sfri_3990 Shewanella frigidimarina NCIMB 400 sucrose phosphorylase YP_752654.1 4758234 D 318167 CDS YP_752655.1 114565141 4280882 complement(4759846..4760877) 1 NC_008345.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: hch:HCH_04796 transcriptional regulator; transcriptional regulator, LacI family protein 4760877 4280882 Sfri_3991 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LacI family protein YP_752655.1 4759846 R 318167 CDS YP_752656.1 114565142 4280883 complement(4761018..4761608) 1 NC_008345.1 PFAM: NLP/P60 protein; KEGG: son:SO0061 lipoprotein, NLP/P60 family; NLP/P60 protein 4761608 4280883 Sfri_3992 Shewanella frigidimarina NCIMB 400 NLP/P60 protein YP_752656.1 4761018 R 318167 CDS YP_752657.1 114565143 4280884 complement(4761669..4762253) 1 NC_008345.1 PFAM: regulatory protein, TetR; KEGG: nmu:Nmul_A1967 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein 4762253 4280884 Sfri_3993 Shewanella frigidimarina NCIMB 400 transcriptional regulator, TetR family protein YP_752657.1 4761669 R 318167 CDS YP_752658.1 114565144 4280885 complement(4762638..4762910) 1 NC_008345.1 hypothetical protein 4762910 4280885 Sfri_3994 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752658.1 4762638 R 318167 CDS YP_752659.1 114565145 4280886 complement(4762991..4763539) 1 NC_008345.1 PFAM: transport-associated; KEGG: pha:PSHAa0325 hypothetical protein; transport-associated 4763539 4280886 Sfri_3995 Shewanella frigidimarina NCIMB 400 transport-associated YP_752659.1 4762991 R 318167 CDS YP_752660.1 114565146 4280887 complement(4763930..4764466) 1 NC_008345.1 hypothetical protein 4764466 4280887 Sfri_3996 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752660.1 4763930 R 318167 CDS YP_752661.1 114565147 4280888 4764677..4766044 1 NC_008345.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: vpa:VP0080 putative sigma-54 interacting response regulator transcription regulator protein; sigma54 specific transcriptional regulator, Fis family protein 4766044 4280888 Sfri_3997 Shewanella frigidimarina NCIMB 400 sigma54 specific transcriptional regulator, Fis family protein YP_752661.1 4764677 D 318167 CDS YP_752662.1 114565148 4280889 complement(4766065..4767717) 1 NC_008345.1 PFAM: Dual specificity protein phosphatase; diacylglycerol kinase, catalytic region; KEGG: pha:PSHAb0333 methylglyoxal synthase; hypothetical protein 4767717 4280889 Sfri_3998 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752662.1 4766065 R 318167 CDS YP_752663.1 114565149 4280890 complement(4767934..4768128) 1 NC_008345.1 KEGG: pha:PSHAa0536 hypothetical protein; hypothetical protein 4768128 4280890 Sfri_3999 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752663.1 4767934 R 318167 CDS YP_752664.1 114565150 4280891 complement(4768208..4768384) 1 NC_008345.1 PFAM: protein of unknown function DUF1328; KEGG: pha:PSHAa0537 hypothetical protein; hypothetical protein 4768384 4280891 Sfri_4000 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752664.1 4768208 R 318167 CDS YP_752665.1 114565151 4280892 complement(4768712..4769929) 1 NC_008345.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3354 hypothetical protein; major facilitator transporter 4769929 4280892 Sfri_4001 Shewanella frigidimarina NCIMB 400 major facilitator transporter YP_752665.1 4768712 R 318167 CDS YP_752666.1 114565152 4280893 complement(4769935..4770945) 1 NC_008345.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 4770945 4280893 Sfri_4002 Shewanella frigidimarina NCIMB 400 glyceraldehyde-3-phosphate dehydrogenase YP_752666.1 4769935 R 318167 CDS YP_752667.1 114565153 4280894 complement(4771082..4772101) 1 NC_008345.1 PFAM: Bile acid:sodium symporter; KEGG: cps:CPS_3442 putative arsenical-resistance protein; bile acid:sodium symporter 4772101 4280894 Sfri_4003 Shewanella frigidimarina NCIMB 400 bile acid:sodium symporter YP_752667.1 4771082 R 318167 CDS YP_752668.1 114565154 4280895 complement(4772179..4772991) 1 NC_008345.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; regulatory protein, ArsR; KEGG: cps:CPS_3358 transcriptional regulator, ArsR family; transcriptional regulator, ArsR family protein 4772991 4280895 Sfri_4004 Shewanella frigidimarina NCIMB 400 transcriptional regulator, ArsR family protein YP_752668.1 4772179 R 318167 CDS YP_752669.1 114565155 4280896 complement(4773208..4775298) 1 NC_008345.1 KEGG: gsu:GSU1927 sensory box/response regulator; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; SMART: PAS domain containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 4775298 4280896 Sfri_4005 Shewanella frigidimarina NCIMB 400 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_752669.1 4773208 R 318167 CDS YP_752670.1 114565156 4280897 complement(4775298..4777646) 1 NC_008345.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: tbd:Tbd_1268 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase 4777646 4280897 Sfri_4006 Shewanella frigidimarina NCIMB 400 multi-sensor hybrid histidine kinase YP_752670.1 4775298 R 318167 CDS YP_752671.1 114565157 4280898 complement(4777643..4778182) 1 NC_008345.1 KEGG: hch:HCH_02557 hypothetical protein; hypothetical protein 4778182 4280898 Sfri_4007 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752671.1 4777643 R 318167 CDS YP_752672.1 114565158 4280899 complement(4778193..4780235) 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug; TonB-dependent receptor, plug 4780235 4280899 Sfri_4008 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor, plug YP_752672.1 4778193 R 318167 CDS YP_752673.1 114565159 4280900 complement(4780587..4781123) 1 NC_008345.1 KEGG: hch:HCH_02557 hypothetical protein; hypothetical protein 4781123 4280900 Sfri_4009 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752673.1 4780587 R 318167 CDS YP_752674.1 114565160 4280901 complement(4781134..4783170) 1 NC_008345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug; TonB-dependent receptor, plug 4783170 4280901 Sfri_4010 Shewanella frigidimarina NCIMB 400 TonB-dependent receptor, plug YP_752674.1 4781134 R 318167 CDS YP_752675.1 114565161 4280902 4783766..4784017 1 NC_008345.1 PFAM: SpoVT/AbrB domain protein; KEGG: xac:XACa0028 plasmid stable inheritance protein I; transcriptional regulator/antitoxin MazE 4784017 4280902 Sfri_4011 Shewanella frigidimarina NCIMB 400 transcriptional regulator/antitoxin MazE YP_752675.1 4783766 D 318167 CDS YP_752676.1 114565162 4280903 complement(4784242..4785741) 1 NC_008345.1 KEGG: hch:HCH_03615 hypothetical protein; hypothetical protein 4785741 4280903 Sfri_4012 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752676.1 4784242 R 318167 CDS YP_752677.1 114565163 4280904 complement(4785780..4786592) 1 NC_008345.1 PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 4786592 4280904 Sfri_4013 Shewanella frigidimarina NCIMB 400 integrase catalytic subunit YP_752677.1 4785780 R 318167 CDS YP_752678.1 114565164 4280905 complement(4786646..4786957) 1 NC_008345.1 PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 4786957 4280905 Sfri_4014 Shewanella frigidimarina NCIMB 400 transposase IS3/IS911 family protein YP_752678.1 4786646 R 318167 CDS YP_752679.1 114565165 4280906 4787021..4787548 1 NC_008345.1 hypothetical protein 4787548 4280906 Sfri_4015 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752679.1 4787021 D 318167 CDS YP_752680.1 114565166 4280907 4787575..4788936 1 NC_008345.1 hypothetical protein 4788936 4280907 Sfri_4016 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752680.1 4787575 D 318167 CDS YP_752681.1 114565167 4280908 complement(4789127..4790308) 1 NC_008345.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0054 conserved hypothetical protein TIGR00275; hypothetical protein 4790308 4280908 Sfri_4017 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752681.1 4789127 R 318167 CDS YP_752682.1 114565168 4280909 complement(4790433..4791449) 1 NC_008345.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 4791449 gpsA 4280909 gpsA Shewanella frigidimarina NCIMB 400 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_752682.1 4790433 R 318167 CDS YP_752683.1 114565169 4280910 complement(4791453..4791926) 1 NC_008345.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 4791926 4280910 Sfri_4019 Shewanella frigidimarina NCIMB 400 preprotein translocase subunit SecB YP_752683.1 4791453 R 318167 CDS YP_752684.1 114565170 4280911 complement(4792133..4792567) 1 NC_008345.1 PFAM: Rhodanese domain protein; KEGG: son:SO0050 rhodanese domain protein; rhodanese domain-containing protein 4792567 4280911 Sfri_4020 Shewanella frigidimarina NCIMB 400 rhodanese domain-containing protein YP_752684.1 4792133 R 318167 CDS YP_752685.1 114565171 4280912 4792819..4794360 1 NC_008345.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 4794360 4280912 Sfri_4021 Shewanella frigidimarina NCIMB 400 phosphoglyceromutase YP_752685.1 4792819 D 318167 CDS YP_752686.1 114565172 4280913 4794371..4795504 1 NC_008345.1 PFAM: peptidase M23B; KEGG: son:SO0048 peptidase, M23/M37 family; peptidase M23B 4795504 4280913 Sfri_4022 Shewanella frigidimarina NCIMB 400 peptidase M23B YP_752686.1 4794371 D 318167 CDS YP_752687.1 114565173 4280914 4795738..4796454 1 NC_008345.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: son:SO0046 hypothetical protein; hypothetical protein 4796454 4280914 Sfri_4023 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752687.1 4795738 D 318167 CDS YP_752688.1 114565174 4280915 complement(4796429..4796884) 1 NC_008345.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: son:SO0045 Rrf2 family protein; BadM/Rrf2 family transcriptional regulator 4796884 4280915 Sfri_4024 Shewanella frigidimarina NCIMB 400 BadM/Rrf2 family transcriptional regulator YP_752688.1 4796429 R 318167 CDS YP_752689.1 114565175 4280916 complement(4796920..4797171) 1 NC_008345.1 PFAM: protein of unknown function UPF0153; KEGG: son:SO0044 hypothetical protein; hypothetical protein 4797171 4280916 Sfri_4025 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752689.1 4796920 R 318167 CDS YP_752690.1 114565176 4280917 4797414..4798346 1 NC_008345.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 4798346 rihA 4280917 rihA Shewanella frigidimarina NCIMB 400 ribonucleoside hydrolase 1 YP_752690.1 4797414 D 318167 CDS YP_752691.1 114565177 4280918 4798447..4798899 1 NC_008345.1 KEGG: son:SO2875 ISSod10, transposase OrfB; hypothetical protein 4798899 4280918 Sfri_4027 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752691.1 4798447 D 318167 CDS YP_752692.1 114565178 4280919 complement(4804828..4806255) 1 NC_008345.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4737 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 4806255 4280919 Sfri_4028 Shewanella frigidimarina NCIMB 400 4Fe-4S ferredoxin YP_752692.1 4804828 R 318167 CDS YP_752693.1 114565179 4280920 4806332..4806679 1 NC_008345.1 KEGG: son:SO4738 hypothetical protein; hypothetical protein 4806679 4280920 Sfri_4029 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752693.1 4806332 D 318167 CDS YP_752694.1 114565180 4280921 4806779..4807693 1 NC_008345.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 4807693 4280921 Sfri_4030 Shewanella frigidimarina NCIMB 400 naphthoate synthase YP_752694.1 4806779 D 318167 CDS YP_752695.1 114565181 4280922 4807891..4808112 1 NC_008345.1 KEGG: son:SO4740 hypothetical protein; hypothetical protein 4808112 4280922 Sfri_4031 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752695.1 4807891 D 318167 CDS YP_752696.1 114565182 4280923 4808891..4810492 1 NC_008345.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cps:CPS_4692 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4810492 4280923 Sfri_4032 Shewanella frigidimarina NCIMB 400 methyl-accepting chemotaxis sensory transducer YP_752696.1 4808891 D 318167 CDS YP_752697.1 114565183 4280924 complement(4810511..4811272) 1 NC_008345.1 PFAM: PepSY-associated TM helix domain protein; KEGG: cps:CPS_4600 hypothetical protein; PepSY-associated TM helix domain-containing protein 4811272 4280924 Sfri_4033 Shewanella frigidimarina NCIMB 400 PepSY-associated TM helix domain-containing protein YP_752697.1 4810511 R 318167 CDS YP_752698.1 114565184 4280925 complement(4811314..4811844) 1 NC_008345.1 PFAM: FMN-binding domain protein; KEGG: cps:CPS_4601 hypothetical protein; FMN-binding domain-containing protein 4811844 4280925 Sfri_4034 Shewanella frigidimarina NCIMB 400 FMN-binding domain-containing protein YP_752698.1 4811314 R 318167 CDS YP_752699.1 114565185 4280926 complement(4811959..4813134) 1 NC_008345.1 PFAM: phosphate-selective porin O and P; KEGG: cps:CPS_4602 hypothetical protein; phosphate-selective porin O and P 4813134 4280926 Sfri_4035 Shewanella frigidimarina NCIMB 400 phosphate-selective porin O and P YP_752699.1 4811959 R 318167 CDS YP_752700.1 114565186 4280927 4813681..4814346 1 NC_008345.1 KEGG: sde:Sde_2848 histidine kinase; histidine kinase 4814346 4280927 Sfri_4036 Shewanella frigidimarina NCIMB 400 histidine kinase YP_752700.1 4813681 D 318167 CDS YP_752701.1 114565187 4280928 4814835..4816028 1 NC_008345.1 SMART: PUA domain containing protein; KEGG: son:SO1149 hypothetical SAM-dependent methyltransferase; PUA domain-containing protein 4816028 4280928 Sfri_4037 Shewanella frigidimarina NCIMB 400 PUA domain-containing protein YP_752701.1 4814835 D 318167 CDS YP_752702.1 114565188 4280929 complement(4816195..4816533) 1 NC_008345.1 PFAM: protein of unknown function DUF805; KEGG: cps:CPS_3606 hypothetical protein; hypothetical protein 4816533 4280929 Sfri_4038 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752702.1 4816195 R 318167 CDS YP_752703.1 114565189 4280930 complement(4816682..4817743) 1 NC_008345.1 PFAM: protein of unknown function DUF450; KEGG: vpa:VPA1572 hypothetical protein; hypothetical protein 4817743 4280930 Sfri_4039 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752703.1 4816682 R 318167 CDS YP_752704.1 114565190 4280931 complement(4817885..4819714) 1 NC_008345.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 4819714 4280931 Sfri_4040 Shewanella frigidimarina NCIMB 400 glucosamine--fructose-6-phosphate aminotransferase YP_752704.1 4817885 R 318167 CDS YP_752705.1 114565191 4280932 complement(4819752..4820522) 1 NC_008345.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: son:SO4742 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 4820522 4280932 Sfri_4041 Shewanella frigidimarina NCIMB 400 DeoR family transcriptional regulator YP_752705.1 4819752 R 318167 CDS YP_752706.1 114565192 4280933 complement(4820709..4822802) 1 NC_008345.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4743 TonB-dependent receptor, putative; TonB-dependent siderophore receptor 4822802 4280933 Sfri_4042 Shewanella frigidimarina NCIMB 400 TonB-dependent siderophore receptor YP_752706.1 4820709 R 318167 CDS YP_752707.1 114565193 4280934 complement(4823072..4824436) 1 NC_008345.1 KEGG: son:SO4745 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; UDP-N-acetylglucosamine pyrophosphorylase 4824436 4280934 Sfri_4043 Shewanella frigidimarina NCIMB 400 UDP-N-acetylglucosamine pyrophosphorylase YP_752707.1 4823072 R 318167 CDS YP_752708.1 114565194 4280935 complement(4824585..4825013) 1 NC_008345.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase, delta/epsilon subunit; KEGG: son:SO4746 ATP synthase F1, epsilon subunit; ATP synthase F1 subunit epsilon 4825013 4280935 Sfri_4044 Shewanella frigidimarina NCIMB 400 ATP synthase F1 subunit epsilon YP_752708.1 4824585 R 318167 CDS YP_752709.1 114565195 4280936 complement(4825050..4826441) 1 NC_008345.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 4826441 4280936 Sfri_4045 Shewanella frigidimarina NCIMB 400 F0F1 ATP synthase subunit beta YP_752709.1 4825050 R 318167 CDS YP_752710.1 114565196 4280937 complement(4826477..4827337) 1 NC_008345.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 4827337 4280937 Sfri_4046 Shewanella frigidimarina NCIMB 400 F0F1 ATP synthase subunit gamma YP_752710.1 4826477 R 318167 CDS YP_752711.1 114565197 4280938 complement(4827391..4828932) 1 NC_008345.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 4828932 4280938 Sfri_4047 Shewanella frigidimarina NCIMB 400 F0F1 ATP synthase subunit alpha YP_752711.1 4827391 R 318167 CDS YP_752712.1 114565198 4280939 complement(4828947..4829480) 1 NC_008345.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 4829480 4280939 Sfri_4048 Shewanella frigidimarina NCIMB 400 F0F1 ATP synthase subunit delta YP_752712.1 4828947 R 318167 CDS YP_752713.1 114565199 4280940 complement(4829497..4829967) 1 NC_008345.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 4829967 4280940 Sfri_4049 Shewanella frigidimarina NCIMB 400 F0F1 ATP synthase subunit B YP_752713.1 4829497 R 318167 CDS YP_752714.1 114565200 4280941 complement(4830005..4830256) 1 NC_008345.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 4830256 4280941 Sfri_4050 Shewanella frigidimarina NCIMB 400 F0F1 ATP synthase subunit C YP_752714.1 4830005 R 318167 CDS YP_752715.1 114565201 4280942 complement(4830322..4831116) 1 NC_008345.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 4831116 4280942 Sfri_4051 Shewanella frigidimarina NCIMB 400 F0F1 ATP synthase subunit A YP_752715.1 4830322 R 318167 CDS YP_752716.1 114565202 4280943 complement(4831129..4831518) 1 NC_008345.1 PFAM: ATP synthase I chain; KEGG: son:SO4754 ATP synthase protein I; ATP synthase I chain 4831518 4280943 Sfri_4052 Shewanella frigidimarina NCIMB 400 ATP synthase I chain YP_752716.1 4831129 R 318167 CDS YP_752717.1 114565203 4280944 complement(4831738..4832619) 1 NC_008345.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: son:SO4755 ParB family protein; parB-like partition proteins 4832619 4280944 Sfri_4053 Shewanella frigidimarina NCIMB 400 parB-like partition proteins YP_752717.1 4831738 R 318167 CDS YP_752718.1 114565204 4280945 complement(4832629..4833417) 1 NC_008345.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO4756 ParA family protein; cobyrinic acid a,c-diamide synthase 4833417 4280945 Sfri_4054 Shewanella frigidimarina NCIMB 400 cobyrinic acid a,c-diamide synthase YP_752718.1 4832629 R 318167 CDS YP_752719.1 114565205 4280946 complement(4833480..4834121) 1 NC_008345.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4834121 gidB 4280946 gidB Shewanella frigidimarina NCIMB 400 16S rRNA methyltransferase GidB YP_752719.1 4833480 R 318167 CDS YP_752720.1 114565206 4280947 complement(4834213..4836102) 1 NC_008345.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 4836102 4280947 Sfri_4056 Shewanella frigidimarina NCIMB 400 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_752720.1 4834213 R 318167 CDS YP_752721.1 114565207 4280948 complement(4836574..4837014) 1 NC_008345.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 4837014 4280948 Sfri_4057 Shewanella frigidimarina NCIMB 400 flavodoxin YP_752721.1 4836574 R 318167 CDS YP_752722.1 114565208 4280949 complement(4837298..4838143) 1 NC_008345.1 PFAM: putative esterase; KEGG: ppr:PBPRA0783 putative esterase; carboxylesterase 4838143 4280949 Sfri_4058 Shewanella frigidimarina NCIMB 400 carboxylesterase YP_752722.1 4837298 R 318167 CDS YP_752723.1 114565209 4280950 complement(4838217..4839347) 1 NC_008345.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ppr:PBPRA0784 putative alcohol dehydrogenase class III; alcohol dehydrogenase 4839347 4280950 Sfri_4059 Shewanella frigidimarina NCIMB 400 alcohol dehydrogenase YP_752723.1 4838217 R 318167 CDS YP_752724.1 114565210 4280951 4839489..4840355 1 NC_008345.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2053 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 4840355 4280951 Sfri_4060 Shewanella frigidimarina NCIMB 400 transcriptional regulator, LysR family protein YP_752724.1 4839489 D 318167 CDS YP_752725.1 114565211 4280952 complement(4840407..4841021) 1 NC_008345.1 KEGG: vpa:VPA0793 DNA polymerase III epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 4841021 4280952 Sfri_4061 Shewanella frigidimarina NCIMB 400 DNA polymerase III subunit epsilon YP_752725.1 4840407 R 318167 CDS YP_752726.1 114565212 4280953 complement(4841032..4842393) 1 NC_008345.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4842393 trmE 4280953 trmE Shewanella frigidimarina NCIMB 400 tRNA modification GTPase TrmE YP_752726.1 4841032 R 318167 CDS YP_752727.1 114565213 4280954 complement(4842475..4844103) 1 NC_008345.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: son:SO0004 inner membrane protein, 60 kDa; 60 kDa inner membrane insertion protein 4844103 4280954 Sfri_4063 Shewanella frigidimarina NCIMB 400 60 kDa inner membrane insertion protein YP_752727.1 4842475 R 318167 CDS YP_752728.1 114565214 4280955 complement(4844107..4844361) 1 NC_008345.1 PFAM: protein of unknown function DUF37; KEGG: son:SO0005 conserved hypothetical protein TIGR00278; hypothetical protein 4844361 4280955 Sfri_4064 Shewanella frigidimarina NCIMB 400 hypothetical protein YP_752728.1 4844107 R 318167 CDS YP_752729.1 114565215 4280956 complement(4844328..4844684) 1 NC_008345.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4844684 rnpA 4280956 rnpA Shewanella frigidimarina NCIMB 400 ribonuclease P YP_752729.1 4844328 R 318167 CDS YP_752730.1 114565216 4280957 complement(4844697..4844834) 1 NC_008345.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4844834 rpmH 4280957 rpmH Shewanella frigidimarina NCIMB 400 50S ribosomal protein L34 YP_752730.1 4844697 R 318167 CDS