-- dump date 20140620_063758 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 318167000001 SEQ_END SEQ_END NC_008345.1 4845257 4845257 DR NC_008345.1; contig end 4845257..4845257 Shewanella frigidimarina NCIMB 400 YP_748702.1 CDS dnaA NC_008345.1 23 1408 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 23..1408 Shewanella frigidimarina NCIMB 400 4277684 YP_748703.1 CDS Sfri_0002 NC_008345.1 1428 2528 D KEGG: son:SO0009 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 1428..2528 Shewanella frigidimarina NCIMB 400 4277685 YP_748704.1 CDS recF NC_008345.1 2617 3699 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 2617..3699 Shewanella frigidimarina NCIMB 400 4277686 YP_748705.1 CDS Sfri_0004 NC_008345.1 3715 6132 D KEGG: son:SO0011 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 3715..6132 Shewanella frigidimarina NCIMB 400 4277687 YP_748706.1 CDS Sfri_0005 NC_008345.1 6233 7285 D SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO0013 hypothetical protein; metal dependent phosphohydrolase 6233..7285 Shewanella frigidimarina NCIMB 400 4277688 YP_748707.1 CDS glyS NC_008345.1 7422 9506 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(7422..9506) Shewanella frigidimarina NCIMB 400 4277689 YP_748708.1 CDS glyQ NC_008345.1 9516 10421 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(9516..10421) Shewanella frigidimarina NCIMB 400 4277690 YP_748709.1 CDS Sfri_0008 NC_008345.1 10534 11097 D KEGG: son:SO0016 DNA-3-methyladenine glycosidase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 10534..11097 Shewanella frigidimarina NCIMB 400 4277691 YP_748710.1 CDS Sfri_0009 NC_008345.1 11162 14344 R PFAM: amidohydrolase; WD40 domain protein beta Propeller; KEGG: son:SO0017 hypothetical amidohydrolase; amidohydrolase complement(11162..14344) Shewanella frigidimarina NCIMB 400 4277692 YP_748711.1 CDS Sfri_0010 NC_008345.1 14637 15080 R KEGG: son:SO0018 hypothetical protein; hypothetical protein complement(14637..15080) Shewanella frigidimarina NCIMB 400 4277693 YP_748712.1 CDS Sfri_0011 NC_008345.1 15084 15329 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA complement(15084..15329) Shewanella frigidimarina NCIMB 400 4277694 YP_748713.1 CDS fadA NC_008345.1 15577 16740 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(15577..16740) Shewanella frigidimarina NCIMB 400 4277695 YP_748714.1 CDS fadB NC_008345.1 16763 18913 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(16763..18913) Shewanella frigidimarina NCIMB 400 4277696 YP_748715.1 CDS Sfri_0014 NC_008345.1 19149 20468 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 19149..20468 Shewanella frigidimarina NCIMB 400 4277697 YP_748716.1 CDS Sfri_0015 NC_008345.1 20461 21075 D PFAM: protein of unknown function UPF0029; KEGG: son:SO0023 conserved hypothetical protein TIGR00257; hypothetical protein 20461..21075 Shewanella frigidimarina NCIMB 400 4277698 YP_748717.1 CDS Sfri_0016 NC_008345.1 21149 22606 D TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: son:SO0024 potassium uptake protein TrkH; potassium uptake protein, TrkH family protein 21149..22606 Shewanella frigidimarina NCIMB 400 4277699 YP_748718.1 CDS Sfri_0017 NC_008345.1 22606 23136 D KEGG: son:SO0025 protoporphyrinogen oxidase; protoporphyrinogen oxidase 22606..23136 Shewanella frigidimarina NCIMB 400 4277700 YP_748719.1 CDS Sfri_0018 NC_008345.1 23262 23567 R PFAM: regulatory protein, ArsR; KEGG: son:SO0026 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(23262..23567) Shewanella frigidimarina NCIMB 400 4278295 YP_748720.1 CDS Sfri_0019 NC_008345.1 23766 24311 D KEGG: son:SO0027 protoporphyrinogen oxidase; protoporphyrinogen oxidase 23766..24311 Shewanella frigidimarina NCIMB 400 4278296 YP_748721.1 CDS Sfri_0020 NC_008345.1 24403 25845 R TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: son:SO0028 potassium uptake protein TrkH; potassium uptake protein, TrkH family protein complement(24403..25845) Shewanella frigidimarina NCIMB 400 4278297 YP_748722.1 CDS trkA NC_008345.1 25852 27261 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(25852..27261) Shewanella frigidimarina NCIMB 400 4278298 YP_748723.1 CDS Sfri_0022 NC_008345.1 27278 28561 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: son:SO0030 Sun protein; sun protein complement(27278..28561) Shewanella frigidimarina NCIMB 400 4278299 YP_748724.1 CDS Sfri_0023 NC_008345.1 28563 29519 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: son:SO0031 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(28563..29519) Shewanella frigidimarina NCIMB 400 4278300 YP_748725.1 CDS def NC_008345.1 29528 30094 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(29528..30094) Shewanella frigidimarina NCIMB 400 4278301 YP_748726.1 CDS Sfri_0025 NC_008345.1 30167 31273 D PFAM: Peptidoglycan-binding LysM; KEGG: son:SO0033 LysM domain protein; peptidoglycan-binding LysM 30167..31273 Shewanella frigidimarina NCIMB 400 4278302 YP_748727.1 CDS Sfri_0026 NC_008345.1 31357 32373 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: son:SO0034 DNA processing protein DprA, putative; DNA protecting protein DprA 31357..32373 Shewanella frigidimarina NCIMB 400 4278303 YP_748728.1 CDS Sfri_0027 NC_008345.1 32376 32849 D PFAM: protein of unknown function DUF494; KEGG: son:SO0035 Smg protein; hypothetical protein 32376..32849 Shewanella frigidimarina NCIMB 400 4278304 YP_748729.1 CDS Sfri_0028 NC_008345.1 32909 33472 D PFAM: DNA topoisomerase, type IA, zn finger domain protein; KEGG: son:SO0036 topoisomerase DNA-binding C4 zinc finger domain protein; DNA topoisomerase type IA Zn finger domain-containing protein 32909..33472 Shewanella frigidimarina NCIMB 400 4278305 YP_748730.1 CDS Sfri_0029 NC_008345.1 33508 34074 D PFAM: SUA5/yciO/yrdC, N-terminal domain protein; KEGG: son:SO0037 Sua5/YciO/YrdC/YwlC family protein; SUA5/yciO/yrdC domain-containing protein 33508..34074 Shewanella frigidimarina NCIMB 400 4278306 YP_748731.1 CDS Sfri_0030 NC_008345.1 34079 35011 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 34079..35011 Shewanella frigidimarina NCIMB 400 4278307 YP_748732.1 CDS Sfri_0031 NC_008345.1 35008 35442 R PFAM: globin; KEGG: son:SO0039 hypothetical globin; globin complement(35008..35442) Shewanella frigidimarina NCIMB 400 4278308 YP_748733.1 CDS Sfri_0032 NC_008345.1 35614 36996 D PFAM: amidohydrolase; KEGG: pha:PSHAa1729 enzyme; amidohydrolase 35614..36996 Shewanella frigidimarina NCIMB 400 4278309 YP_748734.1 CDS Sfri_0033 NC_008345.1 37008 38264 D PFAM: amidohydrolase; KEGG: cps:CPS_3629 amidohydrolase family protein; amidohydrolase 37008..38264 Shewanella frigidimarina NCIMB 400 4278310 YP_748735.1 CDS aroE NC_008345.1 38321 39154 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 38321..39154 Shewanella frigidimarina NCIMB 400 4278311 YP_748736.1 CDS Sfri_0035 NC_008345.1 39154 39411 D KEGG: vfi:VF2534 hypothetical protein; hypothetical protein 39154..39411 Shewanella frigidimarina NCIMB 400 4278312 YP_748737.1 CDS Sfri_0036 NC_008345.1 39408 40631 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO3556 cyclic nucleotide phosphodiesterase, putative; diguanylate cyclase complement(39408..40631) Shewanella frigidimarina NCIMB 400 4278243 YP_748738.1 CDS Sfri_0037 NC_008345.1 40917 41462 R KEGG: son:SO0042 carbonic anhydrase, family 3; carbonic anhydrase complement(40917..41462) Shewanella frigidimarina NCIMB 400 4278244 YP_748739.1 CDS Sfri_0038 NC_008345.1 47851 50334 D KEGG: son:SO4734 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 47851..50334 Shewanella frigidimarina NCIMB 400 4278245 YP_748740.1 CDS Sfri_0039 NC_008345.1 50300 51274 R PFAM: alpha/beta hydrolase fold; KEGG: son:SO4733 lysophospholipase L2; alpha/beta hydrolase complement(50300..51274) Shewanella frigidimarina NCIMB 400 4278246 YP_748741.1 CDS Sfri_0040 NC_008345.1 51337 53145 R PFAM: protein of unknown function DUF885; KEGG: son:SO4732 hypothetical protein; hypothetical protein complement(51337..53145) Shewanella frigidimarina NCIMB 400 4278247 YP_748742.1 CDS Sfri_0041 NC_008345.1 53362 54360 D catalyzes the formation of inosine from adenosine; adenosine deaminase 53362..54360 Shewanella frigidimarina NCIMB 400 4278248 YP_748743.1 CDS Sfri_0042 NC_008345.1 54434 55774 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(54434..55774) Shewanella frigidimarina NCIMB 400 4278249 YP_748744.1 CDS Sfri_0043 NC_008345.1 56007 56756 R PFAM: protein of unknown function DUF833; KEGG: son:SO0126 hypothetical protein; hypothetical protein complement(56007..56756) Shewanella frigidimarina NCIMB 400 4278250 YP_748745.1 CDS Sfri_0044 NC_008345.1 56812 58440 R KEGG: son:SO0127 hypothetical protein; hypothetical protein complement(56812..58440) Shewanella frigidimarina NCIMB 400 4278251 YP_748746.1 CDS Sfri_0045 NC_008345.1 58656 59312 D PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO0129 conserved hypothetical protein TIGR00427; multiple antibiotic resistance (MarC)-like proteins 58656..59312 Shewanella frigidimarina NCIMB 400 4278252 YP_748747.1 CDS Sfri_0046 NC_008345.1 59520 59837 D hypothetical protein 59520..59837 Shewanella frigidimarina NCIMB 400 4278253 YP_748748.1 CDS Sfri_0047 NC_008345.1 59837 62674 D PFAM: PKD domain containing protein; peptidase M6, immune inhibitor A; KEGG: son:SO0130 protease, putative; peptidase M6, immune inhibitor A 59837..62674 Shewanella frigidimarina NCIMB 400 4278254 YP_748749.1 CDS Sfri_0048 NC_008345.1 62765 63379 R PFAM: Chorismate lyase; KEGG: son:SO0131 putative chorismate--pyruvate lyase; chorismate lyase complement(62765..63379) Shewanella frigidimarina NCIMB 400 4278255 YP_748750.1 CDS Sfri_0049 NC_008345.1 63506 63907 D PFAM: flagellar basal body-associated protein FliL; KEGG: son:SO0132 flagellar protein FliL, putative; flagellar basal body-associated protein FliL-like protein 63506..63907 Shewanella frigidimarina NCIMB 400 4278256 YP_748751.1 CDS Sfri_0050 NC_008345.1 63907 64989 D PFAM: protein of unknown function DUF890; KEGG: ppr:PBPRB0892 hypothetical SAM-dependent methyltransferase; putative SAM-dependent methyltransferase 63907..64989 Shewanella frigidimarina NCIMB 400 4278257 YP_748752.1 CDS Sfri_0051 NC_008345.1 64986 65840 R PFAM: formate dehydrogenase, subunit FdhD; KEGG: son:SO4503 formate dehydrogenase accessory protein FdhD, putative; formate dehydrogenase subunit FdhD complement(64986..65840) Shewanella frigidimarina NCIMB 400 4278258 YP_748753.1 CDS Sfri_0052 NC_008345.1 66187 66654 D KEGG: son:SO4504 hypothetical protein; hypothetical protein 66187..66654 Shewanella frigidimarina NCIMB 400 4278259 YP_748754.1 CDS Sfri_0053 NC_008345.1 66651 67307 D KEGG: son:SO4505 hypothetical protein; hypothetical protein 66651..67307 Shewanella frigidimarina NCIMB 400 4277648 YP_748755.1 CDS Sfri_0054 NC_008345.1 67463 69142 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4506 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 67463..69142 Shewanella frigidimarina NCIMB 400 4277649 YP_748756.1 CDS Sfri_0055 NC_008345.1 69153 69818 D PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO4507 TorA specific chaperone, putative; cytoplasmic chaperone TorD family protein 69153..69818 Shewanella frigidimarina NCIMB 400 4277650 YP_748757.1 CDS Sfri_0056 NC_008345.1 69869 70066 D TIGRFAM: Twin-arginine translocation pathway signal; KEGG: son:SO4508 hypothetical protein; twin-arginine translocation pathway signal 69869..70066 Shewanella frigidimarina NCIMB 400 4277651 YP_748758.1 CDS Sfri_0057 NC_008345.1 70083 72932 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4509 formate dehydrogenase, alpha subunit; twin-arginine translocation pathway signal 70083..72932 Shewanella frigidimarina NCIMB 400 4277652 YP_748759.1 CDS Sfri_0058 NC_008345.1 72958 73554 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4510 formate dehydrogenase, iron-sulfur subunit; 4Fe-4S ferredoxin 72958..73554 Shewanella frigidimarina NCIMB 400 4277653 YP_748760.1 CDS Sfri_0059 NC_008345.1 73603 74619 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO4511 formate dehydrogenase, C subunit, putative; formate dehydrogenase, gamma subunit 73603..74619 Shewanella frigidimarina NCIMB 400 4277654 YP_748761.1 CDS Sfri_0060 NC_008345.1 74879 75268 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: ilo:IL1764 lipoprotein A family protein; rare lipoprotein A 74879..75268 Shewanella frigidimarina NCIMB 400 4277655 YP_748762.1 CDS Sfri_0061 NC_008345.1 75399 76208 D hypothetical protein 75399..76208 Shewanella frigidimarina NCIMB 400 4277656 YP_748763.1 CDS Sfri_0062 NC_008345.1 76457 77254 D KEGG: cps:CPS_2860 hypothetical protein; hypothetical protein 76457..77254 Shewanella frigidimarina NCIMB 400 4277657 YP_748764.1 CDS Sfri_0063 NC_008345.1 77363 78286 D KEGG: jan:Jann_3567 hypothetical protein; hypothetical protein 77363..78286 Shewanella frigidimarina NCIMB 400 4277658 YP_748765.1 CDS Sfri_0064 NC_008345.1 78381 79373 D PFAM: alpha/beta hydrolase fold; KEGG: ilo:IL1807 alpha/beta superfamily hydrolase; alpha/beta hydrolase fold 78381..79373 Shewanella frigidimarina NCIMB 400 4277659 YP_748766.1 CDS Sfri_0065 NC_008345.1 79500 80216 D KEGG: cps:CPS_2539 ZIP zinc transporter family protein; ZIP zinc transporter family protein 79500..80216 Shewanella frigidimarina NCIMB 400 4277660 YP_748767.1 CDS Sfri_0066 NC_008345.1 80276 80662 D KEGG: atc:AGR_C_3952 hypothetical protein; hypothetical protein 80276..80662 Shewanella frigidimarina NCIMB 400 4277661 YP_748768.1 CDS Sfri_0067 NC_008345.1 80778 81221 D KEGG: vfi:VF1386 acetyltransferase, GNAT family; GNAT family acetyltransferase 80778..81221 Shewanella frigidimarina NCIMB 400 4277662 YP_748769.1 CDS Sfri_0068 NC_008345.1 81492 82361 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: pha:PSHAb0256 transporter involved in threonine and homoserine efflux; hypothetical protein 81492..82361 Shewanella frigidimarina NCIMB 400 4277663 YP_748770.1 CDS Sfri_0069 NC_008345.1 82458 83498 R hypothetical protein complement(82458..83498) Shewanella frigidimarina NCIMB 400 4277664 YP_748771.1 CDS Sfri_0070 NC_008345.1 83717 84376 D hypothetical protein 83717..84376 Shewanella frigidimarina NCIMB 400 4277665 YP_748772.1 CDS Sfri_0071 NC_008345.1 84393 86246 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: vfi:VF2138 two-component sensor histidine kinase; TPR repeat-containing protein complement(84393..86246) Shewanella frigidimarina NCIMB 400 4278155 YP_748773.1 CDS Sfri_0072 NC_008345.1 86474 86806 D PFAM: small multidrug resistance protein; KEGG: sec:SC050 quaternary ammonium compound resistance protein; small multidrug resistance protein 86474..86806 Shewanella frigidimarina NCIMB 400 4278156 YP_748774.1 CDS Sfri_0073 NC_008345.1 87004 88191 R PFAM: iron-containing alcohol dehydrogenase; KEGG: cac:CAC3392 NADH-dependent butanol dehydrogenase; iron-containing alcohol dehydrogenase complement(87004..88191) Shewanella frigidimarina NCIMB 400 4278157 YP_748775.1 CDS Sfri_0074 NC_008345.1 88420 89289 D PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: dps:DP1867 similar to transcription regulator (AraC-type); AraC family transcriptional regulator 88420..89289 Shewanella frigidimarina NCIMB 400 4278158 YP_748776.1 CDS Sfri_0075 NC_008345.1 89357 89686 D KEGG: vpa:VPA1414 hypothetical protein; hypothetical protein 89357..89686 Shewanella frigidimarina NCIMB 400 4278159 YP_748777.1 CDS Sfri_0076 NC_008345.1 90025 91362 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 90025..91362 Shewanella frigidimarina NCIMB 400 4278160 YP_748778.1 CDS Sfri_0077 NC_008345.1 91451 92296 D PFAM: PfkB domain protein; KEGG: son:SO4458 carbohydrate kinase, PfkB family; ribokinase-like domain-containing protein 91451..92296 Shewanella frigidimarina NCIMB 400 4278161 YP_748779.1 CDS Sfri_0078 NC_008345.1 92590 93282 D PFAM: 3-alpha; MOSC domain containing protein; KEGG: son:SO4456 hypothetical protein; MOSC domain-containing protein 92590..93282 Shewanella frigidimarina NCIMB 400 4278162 YP_748780.1 CDS Sfri_0079 NC_008345.1 93339 93698 D KEGG: son:SO4455 hypothetical protein; hypothetical protein 93339..93698 Shewanella frigidimarina NCIMB 400 4278163 YP_748781.1 CDS Sfri_0080 NC_008345.1 93795 95705 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4454 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(93795..95705) Shewanella frigidimarina NCIMB 400 4278164 YP_748782.1 CDS Sfri_0081 NC_008345.1 95924 97573 R PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: son:SO4453 electron transfer flavoprotein-ubiquinone oxidoreductase, putative; electron-transferring-flavoprotein dehydrogenase complement(95924..97573) Shewanella frigidimarina NCIMB 400 4278165 YP_748783.1 CDS moaA NC_008345.1 97897 98910 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 97897..98910 Shewanella frigidimarina NCIMB 400 4278166 YP_748784.1 CDS moaC NC_008345.1 98997 99473 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 98997..99473 Shewanella frigidimarina NCIMB 400 4278167 YP_748785.1 CDS Sfri_0084 NC_008345.1 99538 99786 D TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: son:SO4450 molybdenum cofactor biosynthesis protein D; molybdopterin converting factor subunit 1 99538..99786 Shewanella frigidimarina NCIMB 400 4278168 YP_748786.1 CDS Sfri_0085 NC_008345.1 99788 100258 D PFAM: molybdopterin biosynthesis MoaE; KEGG: son:SO4449 molybdenum cofactor biosynthesis protein E; molybdopterin biosynthesis MoaE 99788..100258 Shewanella frigidimarina NCIMB 400 4278169 YP_748787.1 CDS Sfri_0086 NC_008345.1 100290 101141 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO4448 molybdenum ABC transporter, periplasmic molybdenum-binding protein; molybdenum ABC transporter, periplasmic molybdate-binding protein 100290..101141 Shewanella frigidimarina NCIMB 400 4278170 YP_748788.1 CDS Sfri_0087 NC_008345.1 101141 101821 D TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4447 molybdenum ABC transporter, permease protein; molybdate ABC transporter inner membrane subunit 101141..101821 Shewanella frigidimarina NCIMB 400 4278171 YP_748789.1 CDS Sfri_0088 NC_008345.1 101802 102923 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4446 molybdenum ABC transporter, ATP-binding protein; ABC transporter 101802..102923 Shewanella frigidimarina NCIMB 400 4278260 YP_748790.1 CDS Sfri_0089 NC_008345.1 103294 103815 D KEGG: son:SO4429 hypothetical protein; hypothetical protein 103294..103815 Shewanella frigidimarina NCIMB 400 4278261 YP_748791.1 CDS Sfri_0090 NC_008345.1 103823 104506 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4428 DNA-binding response regulator; two component transcriptional regulator, winged helix family protein 103823..104506 Shewanella frigidimarina NCIMB 400 4278262 YP_748792.1 CDS Sfri_0091 NC_008345.1 104574 105815 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4427 sensor histidine kinase; sensor signal transduction histidine kinase 104574..105815 Shewanella frigidimarina NCIMB 400 4278263 YP_748793.1 CDS Sfri_0092 NC_008345.1 105856 106533 D TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: pha:PSHAa1657 23S rRNA pseudouridylate synthase; pseudouridine synthase Rlu family protein 105856..106533 Shewanella frigidimarina NCIMB 400 4278264 YP_748794.1 CDS Sfri_0093 NC_008345.1 106610 107890 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4425 GGDEF family protein; diguanylate cyclase complement(106610..107890) Shewanella frigidimarina NCIMB 400 4278265 YP_748795.1 CDS Sfri_0094 NC_008345.1 107995 108162 D PFAM: protein of unknown function UPF0057; KEGG: vpa:VPA0409 plasma membrane protein involved in salt tolerance; hypothetical protein 107995..108162 Shewanella frigidimarina NCIMB 400 4278266 YP_748796.1 CDS Sfri_0095 NC_008345.1 108277 108483 D KEGG: son:SO4421 hypothetical protein; hypothetical protein 108277..108483 Shewanella frigidimarina NCIMB 400 4278267 YP_748797.1 CDS Sfri_0096 NC_008345.1 108516 109286 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB complement(108516..109286) Shewanella frigidimarina NCIMB 400 4278268 YP_748798.1 CDS Sfri_0097 NC_008345.1 109294 110547 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: son:SO0138 molybdopterin biosynthesis MoeA protein; molybdenum cofactor synthesis domain-containing protein complement(109294..110547) Shewanella frigidimarina NCIMB 400 4278269 YP_748799.1 CDS Sfri_0098 NC_008345.1 110654 110977 D PFAM: Excinuclease ABC, C subunit domain protein; KEGG: son:SO0145 hypothetical URI domain endonuclease; excinuclease ABC subunit C 110654..110977 Shewanella frigidimarina NCIMB 400 4278270 YP_748800.1 CDS Sfri_0099 NC_008345.1 111080 111973 D KEGG: hch:HCH_00813 hypothetical protein; hypothetical protein 111080..111973 Shewanella frigidimarina NCIMB 400 4278271 YP_748801.1 CDS Sfri_0100 NC_008345.1 112015 113874 R PFAM: peptidase M14, carboxypeptidase A; KEGG: son:SO0152 hypothetical carboxypeptidase; peptidase M14, carboxypeptidase A complement(112015..113874) Shewanella frigidimarina NCIMB 400 4278272 YP_748802.1 CDS Sfri_0101 NC_008345.1 114063 115604 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(114063..115604) Shewanella frigidimarina NCIMB 400 4278273 YP_748803.1 CDS hslO NC_008345.1 115874 116734 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(115874..116734) Shewanella frigidimarina NCIMB 400 4278274 YP_748804.1 CDS Sfri_0103 NC_008345.1 116760 117158 R PFAM: RNA-binding S4 domain protein; KEGG: son:SO0164 heat shock protein 15; RNA-binding S4 domain-containing protein complement(116760..117158) Shewanella frigidimarina NCIMB 400 4278275 YP_748805.1 CDS Sfri_0104 NC_008345.1 117423 118337 D TIGRFAM: general secretion pathway protein C; KEGG: son:SO0165 general secretion pathway protein C; general secretion pathway protein C 117423..118337 Shewanella frigidimarina NCIMB 400 4278276 YP_748806.1 CDS Sfri_0105 NC_008345.1 118362 120494 D TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: son:SO0166 general secretion pathway protein D; general secretion pathway protein D 118362..120494 Shewanella frigidimarina NCIMB 400 4278277 YP_748807.1 CDS Sfri_0106 NC_008345.1 120502 122046 D KEGG: son:SO0167 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E 120502..122046 Shewanella frigidimarina NCIMB 400 4277176 YP_748808.1 CDS Sfri_0107 NC_008345.1 122050 123282 D TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: son:SO0168 general secretion pathway protein F; general secretion pathway protein F 122050..123282 Shewanella frigidimarina NCIMB 400 4277177 YP_748809.1 CDS Sfri_0108 NC_008345.1 123379 123813 D TIGRFAM: general secretion pathway protein G; PFAM: methylation site containing protein; Bacterial type II secretion system protein G; KEGG: son:SO0169 general secretion pathway protein G; general secretion pathway protein G 123379..123813 Shewanella frigidimarina NCIMB 400 4277178 YP_748810.1 CDS Sfri_0109 NC_008345.1 123815 124387 D TIGRFAM: general secretion pathway protein H; Prepilin-type cleavage/methylation-like; KEGG: son:SO0170 general secretion pathway protein H; general secretion pathway protein H 123815..124387 Shewanella frigidimarina NCIMB 400 4277179 YP_748811.1 CDS Sfri_0110 NC_008345.1 124380 124817 D TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; methylation site containing protein; KEGG: son:SO0171 general secretion pathway protein I; general secretion pathway protein I 124380..124817 Shewanella frigidimarina NCIMB 400 4277180 YP_748812.1 CDS Sfri_0111 NC_008345.1 124798 125508 D TIGRFAM: general secretion pathway protein J; PFAM: methylation site containing protein; KEGG: son:SO0172 general secretion pathway protein J; general secretion pathway protein J 124798..125508 Shewanella frigidimarina NCIMB 400 4277181 YP_748813.1 CDS Sfri_0112 NC_008345.1 125508 126494 D PFAM: General secretion pathway protein K; KEGG: son:SO0173 general secretion pathway protein K; general secretion pathway protein K 125508..126494 Shewanella frigidimarina NCIMB 400 4277182 YP_748814.1 CDS Sfri_0113 NC_008345.1 126546 127751 D TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: son:SO0174 general secretion pathway protein L; general secretion pathway protein L 126546..127751 Shewanella frigidimarina NCIMB 400 4277183 YP_748815.1 CDS Sfri_0114 NC_008345.1 127753 128229 D PFAM: General secretion pathway M protein; KEGG: son:SO0175 general secretion pathway protein M; general secretion pathway M protein 127753..128229 Shewanella frigidimarina NCIMB 400 4277184 YP_748816.1 CDS Sfri_0115 NC_008345.1 128239 129000 D PFAM: type II secretion system protein N; KEGG: son:SO0176 general secretion pathway protein N; type II secretion system protein N 128239..129000 Shewanella frigidimarina NCIMB 400 4277185 YP_748817.1 CDS Sfri_0116 NC_008345.1 129169 129834 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0177 HAD-superfamily hydrolase, subfamily IA, variant 3 protein family; HAD family hydrolase complement(129169..129834) Shewanella frigidimarina NCIMB 400 4277186 YP_748818.1 CDS nudE NC_008345.1 129912 130499 D ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 129912..130499 Shewanella frigidimarina NCIMB 400 4277187 YP_748819.1 CDS Sfri_0118 NC_008345.1 130616 131425 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: son:SO0191 cysQ protein; 3'(2'),5'-bisphosphate nucleotidase 130616..131425 Shewanella frigidimarina NCIMB 400 4277188 YP_748820.1 CDS Sfri_0119 NC_008345.1 131666 132766 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(131666..132766) Shewanella frigidimarina NCIMB 400 4277189 YP_748821.1 CDS Sfri_0120 NC_008345.1 132766 133821 R catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase complement(132766..133821) Shewanella frigidimarina NCIMB 400 4277190 YP_748822.1 CDS Sfri_0121 NC_008345.1 134018 134632 D KEGG: son:SO0193 transcriptional regulator, TetR family; putative transcriptional regulator, TetR family protein 134018..134632 Shewanella frigidimarina NCIMB 400 4277191 YP_748823.1 CDS Sfri_0122 NC_008345.1 134619 136475 D PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: son:SO0194 acyltransferase family protein; phospholipid/glycerol acyltransferase 134619..136475 Shewanella frigidimarina NCIMB 400 4277192 YP_748824.1 CDS Sfri_0123 NC_008345.1 136557 137666 R PFAM: fatty acid desaturase; KEGG: son:SO0197 fatty acid desaturase, family 1; stearoyl-CoA 9-desaturase complement(136557..137666) Shewanella frigidimarina NCIMB 400 4277105 YP_748825.1 CDS Sfri_0124 NC_008345.1 137823 138440 D negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 137823..138440 Shewanella frigidimarina NCIMB 400 4277106 YP_748826.1 CDS Sfri_0125 NC_008345.1 138520 139617 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(138520..139617) Shewanella frigidimarina NCIMB 400 4277107 YP_748827.1 CDS Sfri_0126 NC_008345.1 139747 140526 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 139747..140526 Shewanella frigidimarina NCIMB 400 4277108 YP_748828.1 CDS Sfri_0127 NC_008345.1 140574 141017 R PFAM: RNP-1 like RNA-binding protein; KEGG: son:SO0208 RNA-binding protein; RNP-1 like RNA-binding protein complement(140574..141017) Shewanella frigidimarina NCIMB 400 4277109 YP_748829.1 CDS Sfri_0128 NC_008345.1 147215 147340 D KEGG: son:SOA0117 hypothetical protein; hypothetical protein 147215..147340 Shewanella frigidimarina NCIMB 400 4277110 YP_748830.1 CDS Sfri_0129 NC_008345.1 147337 147870 R KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB complement(147337..147870) Shewanella frigidimarina NCIMB 400 4277111 YP_748831.1 CDS Sfri_0130 NC_008345.1 147884 148363 R KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA complement(147884..148363) Shewanella frigidimarina NCIMB 400 4277112 YP_748832.1 CDS murB NC_008345.1 148584 149600 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 148584..149600 Shewanella frigidimarina NCIMB 400 4277113 YP_748833.1 CDS Sfri_0132 NC_008345.1 149597 150559 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 149597..150559 Shewanella frigidimarina NCIMB 400 4277114 YP_748834.1 CDS Sfri_0133 NC_008345.1 150596 151546 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(150596..151546) Shewanella frigidimarina NCIMB 400 4277115 YP_748835.1 CDS Sfri_0134 NC_008345.1 152246 153430 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 152246..153430 Shewanella frigidimarina NCIMB 400 4277116 YP_748836.1 CDS secE NC_008345.1 153699 154070 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 153699..154070 Shewanella frigidimarina NCIMB 400 4277117 YP_748837.1 CDS Sfri_0136 NC_008345.1 154081 154632 D KEGG: son:SO0219 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; NusG antitermination factor 154081..154632 Shewanella frigidimarina NCIMB 400 4277118 YP_748838.1 CDS rplK NC_008345.1 154762 155190 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 154762..155190 Shewanella frigidimarina NCIMB 400 4277119 YP_748839.1 CDS rplA NC_008345.1 155195 155896 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 155195..155896 Shewanella frigidimarina NCIMB 400 4277120 YP_748840.1 CDS rplJ NC_008345.1 156173 156673 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 156173..156673 Shewanella frigidimarina NCIMB 400 4277121 YP_748841.1 CDS Sfri_0140 NC_008345.1 156728 157093 D PFAM: ribosomal protein L7/L12; KEGG: son:SO0223 50S ribosomal protein L7/L12; 50S ribosomal protein L7/L12 156728..157093 Shewanella frigidimarina NCIMB 400 4277122 YP_748842.1 CDS rpoB NC_008345.1 157329 161360 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 157329..161360 Shewanella frigidimarina NCIMB 400 4277806 YP_748843.1 CDS Sfri_0142 NC_008345.1 161443 165669 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 161443..165669 Shewanella frigidimarina NCIMB 400 4277807 YP_748844.1 CDS rpsL NC_008345.1 165847 166221 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 165847..166221 Shewanella frigidimarina NCIMB 400 4277808 YP_748845.1 CDS Sfri_0144 NC_008345.1 166304 166774 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 166304..166774 Shewanella frigidimarina NCIMB 400 4277809 YP_748846.1 CDS Sfri_0145 NC_008345.1 166853 168949 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 166853..168949 Shewanella frigidimarina NCIMB 400 4277810 YP_748847.1 CDS Sfri_0146 NC_008345.1 169019 170203 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 169019..170203 Shewanella frigidimarina NCIMB 400 4277811 YP_748848.1 CDS Sfri_0147 NC_008345.1 170557 170868 D PFAM: ribosomal protein S10; KEGG: son:SO0230 30S ribosomal protein S10; 30S ribosomal protein S10 170557..170868 Shewanella frigidimarina NCIMB 400 4277812 YP_748849.1 CDS rplC NC_008345.1 170896 171534 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 170896..171534 Shewanella frigidimarina NCIMB 400 4277813 YP_748850.1 CDS rplD NC_008345.1 171552 172157 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 171552..172157 Shewanella frigidimarina NCIMB 400 4277814 YP_748851.1 CDS rplW NC_008345.1 172154 172456 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 172154..172456 Shewanella frigidimarina NCIMB 400 4277815 YP_748852.1 CDS rplB NC_008345.1 172473 173297 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 172473..173297 Shewanella frigidimarina NCIMB 400 4277816 YP_748853.1 CDS rpsS NC_008345.1 173312 173590 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 173312..173590 Shewanella frigidimarina NCIMB 400 4277817 YP_748854.1 CDS rplV NC_008345.1 173606 173938 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 173606..173938 Shewanella frigidimarina NCIMB 400 4277818 YP_748855.1 CDS rpsC NC_008345.1 173951 174640 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 173951..174640 Shewanella frigidimarina NCIMB 400 4277819 YP_748856.1 CDS rplP NC_008345.1 174652 175062 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 174652..175062 Shewanella frigidimarina NCIMB 400 4277820 YP_748857.1 CDS Sfri_0156 NC_008345.1 175062 175253 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 175062..175253 Shewanella frigidimarina NCIMB 400 4277821 YP_748858.1 CDS Sfri_0157 NC_008345.1 175253 175501 D PFAM: ribosomal protein S17; KEGG: son:SO0240 30S ribosomal subunit protein S17; 30S ribosomal protein S17 175253..175501 Shewanella frigidimarina NCIMB 400 4277822 YP_748859.1 CDS rplN NC_008345.1 175678 176046 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 175678..176046 Shewanella frigidimarina NCIMB 400 4277228 YP_748860.1 CDS rplX NC_008345.1 176057 176371 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 176057..176371 Shewanella frigidimarina NCIMB 400 4277229 YP_748861.1 CDS rplE NC_008345.1 176385 176924 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 176385..176924 Shewanella frigidimarina NCIMB 400 4277230 YP_748862.1 CDS rpsN NC_008345.1 176935 177240 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 176935..177240 Shewanella frigidimarina NCIMB 400 4277231 YP_748863.1 CDS rpsH NC_008345.1 177265 177657 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 177265..177657 Shewanella frigidimarina NCIMB 400 4277232 YP_748864.1 CDS rplF NC_008345.1 177668 178201 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 177668..178201 Shewanella frigidimarina NCIMB 400 4277233 YP_748865.1 CDS rplR NC_008345.1 178212 178562 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 178212..178562 Shewanella frigidimarina NCIMB 400 4277234 YP_748866.1 CDS rpsE NC_008345.1 178575 179078 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 178575..179078 Shewanella frigidimarina NCIMB 400 4277235 YP_748867.1 CDS rpmD NC_008345.1 179085 179273 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 179085..179273 Shewanella frigidimarina NCIMB 400 4277236 YP_748868.1 CDS rplO NC_008345.1 179273 179707 D late assembly protein; 50S ribosomal protein L15 179273..179707 Shewanella frigidimarina NCIMB 400 4277237 YP_748869.1 CDS secY NC_008345.1 179715 181055 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 179715..181055 Shewanella frigidimarina NCIMB 400 4277238 YP_748870.1 CDS rpmJ NC_008345.1 181079 181192 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 181079..181192 Shewanella frigidimarina NCIMB 400 4277239 YP_748871.1 CDS rpsM NC_008345.1 181309 181665 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 181309..181665 Shewanella frigidimarina NCIMB 400 4277240 YP_748872.1 CDS Sfri_0171 NC_008345.1 181683 182075 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 181683..182075 Shewanella frigidimarina NCIMB 400 4277241 YP_748873.1 CDS rpsD NC_008345.1 182108 182728 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 182108..182728 Shewanella frigidimarina NCIMB 400 4277242 YP_748874.1 CDS Sfri_0173 NC_008345.1 182753 183742 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 182753..183742 Shewanella frigidimarina NCIMB 400 4277243 YP_748875.1 CDS rplQ NC_008345.1 183783 184178 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 183783..184178 Shewanella frigidimarina NCIMB 400 4277244 YP_748876.1 CDS Sfri_0175 NC_008345.1 185244 185729 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(185244..185729) Shewanella frigidimarina NCIMB 400 4277245 YP_748877.1 CDS Sfri_0176 NC_008345.1 185713 185925 R PFAM: Heme exporter protein D (CcmD); KEGG: son:SO0260 heme exporter protein CcmD; Heme exporter protein CcmD complement(185713..185925) Shewanella frigidimarina NCIMB 400 4277578 YP_748878.1 CDS Sfri_0177 NC_008345.1 185925 186671 R TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: son:SO0261 heme exporter protein CcmC; heme exporter protein CcmC complement(185925..186671) Shewanella frigidimarina NCIMB 400 4277579 YP_748879.1 CDS Sfri_0178 NC_008345.1 186671 187357 R TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: son:SO0262 heme exporter protein CcmB; heme exporter protein CcmB complement(186671..187357) Shewanella frigidimarina NCIMB 400 4277580 YP_748880.1 CDS Sfri_0179 NC_008345.1 187367 188017 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(187367..188017) Shewanella frigidimarina NCIMB 400 4277581 YP_748881.1 CDS Sfri_0180 NC_008345.1 188342 188635 D PFAM: cytochrome c, class I; KEGG: son:SO0264 cytochrome c; cytochrome c, class I 188342..188635 Shewanella frigidimarina NCIMB 400 4277582 YP_748882.1 CDS Sfri_0181 NC_008345.1 188731 189984 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0265 cytochrome c-type biogenesis protein CcmH; hypothetical protein complement(188731..189984) Shewanella frigidimarina NCIMB 400 4277583 YP_748883.1 CDS Sfri_0182 NC_008345.1 190402 192372 D TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO0266 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 190402..192372 Shewanella frigidimarina NCIMB 400 4277584 YP_748884.1 CDS Sfri_0183 NC_008345.1 192389 192943 D TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: son:SO0267 thiol:disulfide interchange protein DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE 192389..192943 Shewanella frigidimarina NCIMB 400 4277585 YP_748885.1 CDS Sfri_0184 NC_008345.1 192943 193425 D PFAM: cytochrome C biogenesis protein; KEGG: son:SO0268 cytochrome c-type biogenesis protein CcmH; cytochrome C biogenesis protein 192943..193425 Shewanella frigidimarina NCIMB 400 4277586 YP_748886.1 CDS Sfri_0185 NC_008345.1 193486 194025 D PFAM: Redoxin domain protein; KEGG: son:SO0269 thioredoxin, putative; redoxin domain-containing protein 193486..194025 Shewanella frigidimarina NCIMB 400 4277587 YP_748887.1 CDS Sfri_0186 NC_008345.1 201080 202354 D TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: son:SO0272 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA 201080..202354 Shewanella frigidimarina NCIMB 400 4277588 YP_748888.1 CDS Sfri_0187 NC_008345.1 202404 205463 R KEGG: son:SO1096 hypothetical protein; hypothetical protein complement(202404..205463) Shewanella frigidimarina NCIMB 400 4277589 YP_748889.1 CDS Sfri_0188 NC_008345.1 205651 206190 R PFAM: protein of unknown function DUF1439; KEGG: son:SO0273 hypothetical protein; hypothetical protein complement(205651..206190) Shewanella frigidimarina NCIMB 400 4277590 YP_748890.1 CDS Sfri_0189 NC_008345.1 206187 208835 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(206187..208835) Shewanella frigidimarina NCIMB 400 4277591 YP_748891.1 CDS Sfri_0190 NC_008345.1 208988 210139 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(208988..210139) Shewanella frigidimarina NCIMB 400 4277592 YP_748892.1 CDS argC NC_008345.1 210403 211383 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 210403..211383 Shewanella frigidimarina NCIMB 400 4277593 YP_748893.1 CDS Sfri_0192 NC_008345.1 211414 212193 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 211414..212193 Shewanella frigidimarina NCIMB 400 4277594 YP_748894.1 CDS Sfri_0193 NC_008345.1 212208 213113 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 212208..213113 Shewanella frigidimarina NCIMB 400 4278119 YP_748895.1 CDS Sfri_0194 NC_008345.1 213206 214429 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 213206..214429 Shewanella frigidimarina NCIMB 400 4278120 YP_748896.1 CDS Sfri_0195 NC_008345.1 214516 215946 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 214516..215946 Shewanella frigidimarina NCIMB 400 4278121 YP_748897.1 CDS Sfri_0196 NC_008345.1 216592 217641 D KEGG: vfi:VF2053 hypothetical protein; hypothetical protein 216592..217641 Shewanella frigidimarina NCIMB 400 4278122 YP_748898.1 CDS Sfri_0197 NC_008345.1 217648 218703 D KEGG: cps:CPS_0837 hypothetical protein; hypothetical protein 217648..218703 Shewanella frigidimarina NCIMB 400 4278123 YP_748899.1 CDS Sfri_0198 NC_008345.1 219013 219951 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: hch:HCH_06939 FOG: GGDEF domain; diguanylate cyclase complement(219013..219951) Shewanella frigidimarina NCIMB 400 4278124 YP_748900.1 CDS Sfri_0199 NC_008345.1 220210 222513 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: gox:GOX0587 membrane-bound aldehyde dehydrogenase, large subunit; twin-arginine translocation pathway signal complement(220210..222513) Shewanella frigidimarina NCIMB 400 4278125 YP_748901.1 CDS Sfri_0200 NC_008345.1 222497 222976 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: gox:GOX0586 membrane-bound aldehyde dehydrogenase, small subunit; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(222497..222976) Shewanella frigidimarina NCIMB 400 4278126 YP_748902.1 CDS Sfri_0201 NC_008345.1 222995 224293 R PFAM: cytochrome c, class I; KEGG: gox:GOX0585 cytochrome c subunit of aldehyde dehydrogenase; cytochrome c, class I complement(222995..224293) Shewanella frigidimarina NCIMB 400 4278127 YP_748903.1 CDS Sfri_0202 NC_008345.1 224961 225278 D hypothetical protein 224961..225278 Shewanella frigidimarina NCIMB 400 4278128 YP_748904.1 CDS Sfri_0203 NC_008345.1 225281 225538 D hypothetical protein 225281..225538 Shewanella frigidimarina NCIMB 400 4278129 YP_748905.1 CDS Sfri_0204 NC_008345.1 225563 227164 D PFAM: PepSY-associated TM helix domain protein; KEGG: pfo:Pfl_0927 aspartate kinase; PepSY-associated TM helix domain-containing protein 225563..227164 Shewanella frigidimarina NCIMB 400 4278130 YP_748906.1 CDS Sfri_0205 NC_008345.1 227239 227934 R PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: vpa:VPA0042 hypothetical protein; pirin domain-containing protein complement(227239..227934) Shewanella frigidimarina NCIMB 400 4278131 YP_748907.1 CDS Sfri_0206 NC_008345.1 228017 228463 R PFAM: DoxX family protein; KEGG: vpa:VPA0043 hypothetical protein; DoxX family protein complement(228017..228463) Shewanella frigidimarina NCIMB 400 4278132 YP_748908.1 CDS Sfri_0207 NC_008345.1 228610 229503 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3318 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 228610..229503 Shewanella frigidimarina NCIMB 400 4278133 YP_748909.1 CDS Sfri_0208 NC_008345.1 229640 230842 R PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_5034 major facilitator superfamily MFS_1; major facilitator transporter complement(229640..230842) Shewanella frigidimarina NCIMB 400 4278134 YP_748910.1 CDS Sfri_0209 NC_008345.1 231035 231916 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppr:PBPRB1652 putative transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 231035..231916 Shewanella frigidimarina NCIMB 400 4278135 YP_748911.1 CDS Sfri_0210 NC_008345.1 232046 232852 D PFAM: aldo/keto reductase; KEGG: xcb:XC_0279 oxidoreductase; aldo/keto reductase 232046..232852 Shewanella frigidimarina NCIMB 400 4278136 YP_748912.1 CDS Sfri_0211 NC_008345.1 233105 233551 D PFAM: regulatory protein, MerR; KEGG: sde:Sde_1934 putative transcriptional regulator, MerR family; transcriptional regulator, MerR family protein 233105..233551 Shewanella frigidimarina NCIMB 400 4277945 YP_748913.1 CDS Sfri_0212 NC_008345.1 233551 235791 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: ilo:IL1218 cation transport ATPase; copper-translocating P-type ATPase 233551..235791 Shewanella frigidimarina NCIMB 400 4277946 YP_748914.1 CDS Sfri_0213 NC_008345.1 235801 236151 D KEGG: ilo:IL1217 likely secreted protein containing plastocyanin domain; plastocyanin domain-containing protein 235801..236151 Shewanella frigidimarina NCIMB 400 4277947 YP_748915.1 CDS Sfri_0214 NC_008345.1 236331 236843 D KEGG: ilo:IL1543 hypothetical protein; hypothetical protein 236331..236843 Shewanella frigidimarina NCIMB 400 4277948 YP_748916.1 CDS Sfri_0215 NC_008345.1 236893 237366 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO4640 antioxidant, AhpC/Tsa family; redoxin domain-containing protein 236893..237366 Shewanella frigidimarina NCIMB 400 4277949 YP_748917.1 CDS Sfri_0216 NC_008345.1 237477 239423 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4635 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(237477..239423) Shewanella frigidimarina NCIMB 400 4277950 YP_748918.1 CDS envZ NC_008345.1 239540 240880 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein complement(239540..240880) Shewanella frigidimarina NCIMB 400 4277951 YP_748919.1 CDS ompR NC_008345.1 240884 241609 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(240884..241609) Shewanella frigidimarina NCIMB 400 4277952 YP_748920.1 CDS Sfri_0219 NC_008345.1 241727 242524 R hypothetical protein complement(241727..242524) Shewanella frigidimarina NCIMB 400 4277953 YP_748921.1 CDS Sfri_0220 NC_008345.1 242736 243647 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(242736..243647) Shewanella frigidimarina NCIMB 400 4277954 YP_748922.1 CDS Sfri_0221 NC_008345.1 243681 244010 R PFAM: cytochrome C oxidase subunit IV; KEGG: cvi:CV3993 cytochrome o ubiquinol oxidase subunit IV; cytochrome C oxidase subunit IV complement(243681..244010) Shewanella frigidimarina NCIMB 400 4277955 YP_748923.1 CDS Sfri_0222 NC_008345.1 244010 244645 R PFAM: cytochrome c oxidase, subunit III; KEGG: pha:PSHAa2229 cytochrome o ubiquinol oxidase subunit III (ubiquinol oxidase chain C); cytochrome c oxidase subunit III complement(244010..244645) Shewanella frigidimarina NCIMB 400 4277956 YP_748924.1 CDS Sfri_0223 NC_008345.1 244645 246627 R PFAM: cytochrome c oxidase, subunit I; KEGG: pha:PSHAa2230 ubiquinol oxidase polypeptide I (cytochrome o subunit 1) (oxidase BO(3) subunit 1) (cytochrome o ubiquinol oxidase subunit 1) (ubiquinol oxidase chain A); cytochrome-c oxidase complement(244645..246627) Shewanella frigidimarina NCIMB 400 4277957 YP_748925.1 CDS Sfri_0224 NC_008345.1 246630 247670 R TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; KEGG: pha:PSHAa2231 ubiquinol oxidase polypeptide II (cytochrome o subunit 2) (oxidase BO(3) subunit 2) (cytochrome o ubiquinol oxidase subunit 2) (ubiquinol oxidase chain B); ubiquinol oxidase, subunit II complement(246630..247670) Shewanella frigidimarina NCIMB 400 4277958 YP_748926.1 CDS Sfri_0225 NC_008345.1 247848 248303 R hypothetical protein complement(247848..248303) Shewanella frigidimarina NCIMB 400 4277959 YP_748927.1 CDS Sfri_0226 NC_008345.1 248689 249216 D PFAM: regulatory protein, TetR; KEGG: ppr:PBPRB1080 hypothetical protein; transcriptional regulator, TetR family protein 248689..249216 Shewanella frigidimarina NCIMB 400 4277960 YP_748928.1 CDS Sfri_0227 NC_008345.1 249219 250268 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ppr:PBPRB1079 hypothetical oxidoreductase protein; alcohol dehydrogenase 249219..250268 Shewanella frigidimarina NCIMB 400 4277961 YP_748929.1 CDS Sfri_0228 NC_008345.1 250509 251321 D PFAM: regulatory protein RecX; KEGG: vfi:VFA0909 putative regulatory protein RecX; regulatory protein RecX 250509..251321 Shewanella frigidimarina NCIMB 400 4278661 YP_748930.1 CDS Sfri_0229 NC_008345.1 251511 252884 R PFAM: fumarate lyase; KEGG: vch:VC1573 fumarate hydratase, class II; fumarate lyase complement(251511..252884) Shewanella frigidimarina NCIMB 400 4278662 YP_748931.1 CDS Sfri_0230 NC_008345.1 252977 255703 D TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: hch:HCH_06874 aconitate hydratase 1; aconitate hydratase 1 252977..255703 Shewanella frigidimarina NCIMB 400 4278663 YP_748932.1 CDS Sfri_0231 NC_008345.1 256270 256950 D KEGG: tbd:Tbd_2287 putative integral membrane protein; putative integral membrane protein 256270..256950 Shewanella frigidimarina NCIMB 400 4278664 YP_748933.1 CDS Sfri_0232 NC_008345.1 257187 257966 R TIGRFAM: acetoin reductases; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL0792 acetoin(diacetyl) reductase; acetoin reductase complement(257187..257966) Shewanella frigidimarina NCIMB 400 4278665 YP_748934.1 CDS Sfri_0233 NC_008345.1 258460 259071 R KEGG: bce:BC2320 hypothetical protein; hypothetical protein complement(258460..259071) Shewanella frigidimarina NCIMB 400 4278666 YP_748935.1 CDS Sfri_0234 NC_008345.1 259285 259770 R TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: vpa:VP0152 transcription elongation factor GreB; transcription elongation factor GreB complement(259285..259770) Shewanella frigidimarina NCIMB 400 4278667 YP_748936.1 CDS Sfri_0235 NC_008345.1 259984 262356 D PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: son:SO4629 hypothetical protein; RNA-binding S1 domain-containing protein 259984..262356 Shewanella frigidimarina NCIMB 400 4278668 YP_748937.1 CDS Sfri_0236 NC_008345.1 262621 264228 D PFAM: sulfatase; protein of unknown function DUF1705; KEGG: vfi:VFA0210 integral membrane protein; sulfatase 262621..264228 Shewanella frigidimarina NCIMB 400 4278669 YP_748938.1 CDS Sfri_0237 NC_008345.1 264239 264682 D PFAM: diacylglycerol kinase; KEGG: pha:PSHAa2773 diacylglycerol kinase (DAGK); diacylglycerol kinase 264239..264682 Shewanella frigidimarina NCIMB 400 4278670 YP_748939.1 CDS Sfri_0238 NC_008345.1 264859 265533 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: vfi:VFA0211 transcriptional regulator; two component transcriptional regulator, winged helix family protein 264859..265533 Shewanella frigidimarina NCIMB 400 4278671 YP_748940.1 CDS Sfri_0239 NC_008345.1 265533 266969 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pha:PSHAa2776 sensor transduction kinase (copper resistance); sensor signal transduction histidine kinase 265533..266969 Shewanella frigidimarina NCIMB 400 4278672 YP_748941.1 CDS Sfri_0240 NC_008345.1 267322 269358 D PFAM: sulfatase; KEGG: son:SO4628 sulfatase; sulfatase 267322..269358 Shewanella frigidimarina NCIMB 400 4278673 YP_748942.1 CDS Sfri_0241 NC_008345.1 269350 269856 R KEGG: son:SO4627 hypothetical protein; hypothetical protein complement(269350..269856) Shewanella frigidimarina NCIMB 400 4278674 YP_748943.1 CDS Sfri_0242 NC_008345.1 269934 270740 R TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: son:SO4626 bioH protein; bioH protein complement(269934..270740) Shewanella frigidimarina NCIMB 400 4278675 YP_748944.1 CDS Sfri_0243 NC_008345.1 270784 271590 D KEGG: son:SO4625 competence protein ComF; competence protein ComF 270784..271590 Shewanella frigidimarina NCIMB 400 4278676 YP_748945.1 CDS Sfri_0244 NC_008345.1 271862 272440 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 271862..272440 Shewanella frigidimarina NCIMB 400 4278677 YP_748946.1 CDS Sfri_0245 NC_008345.1 272549 272878 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: cvi:CV0705 probable FkbP-type peptidyl-prolyl cis-trans isomerase; peptidylprolyl isomerase, FKBP-type complement(272549..272878) Shewanella frigidimarina NCIMB 400 4278678 YP_748947.1 CDS Sfri_0246 NC_008345.1 272915 274849 R PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; phospholipase/Carboxylesterase; KEGG: son:SO4618 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase complement(272915..274849) Shewanella frigidimarina NCIMB 400 4277017 YP_748948.1 CDS Sfri_0247 NC_008345.1 274921 276264 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO4617 DNA-damage-inducible protein F; MATE efflux family protein complement(274921..276264) Shewanella frigidimarina NCIMB 400 4277018 YP_748949.1 CDS Sfri_0248 NC_008345.1 276279 277337 D PFAM: polysaccharide deacetylase; KEGG: son:SO4616 polysaccharide deacetylase family protein; polysaccharide deacetylase 276279..277337 Shewanella frigidimarina NCIMB 400 4277019 YP_748950.1 CDS Sfri_0249 NC_008345.1 277356 277970 R PFAM: electron transport protein SCO1/SenC; KEGG: son:SO4615 SCO1/SenC family protein; electron transport protein SCO1/SenC complement(277356..277970) Shewanella frigidimarina NCIMB 400 4277020 YP_748951.1 CDS Sfri_0250 NC_008345.1 277998 278909 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(277998..278909) Shewanella frigidimarina NCIMB 400 4277021 YP_748952.1 CDS Sfri_0251 NC_008345.1 278923 279903 R PFAM: cytochrome oxidase assembly; KEGG: son:SO4613 cytochrome oxidase assembly protein, putative; cytochrome oxidase assembly complement(278923..279903) Shewanella frigidimarina NCIMB 400 4277022 YP_748953.1 CDS Sfri_0252 NC_008345.1 279903 280454 R KEGG: son:SO4612 hypothetical protein; hypothetical protein complement(279903..280454) Shewanella frigidimarina NCIMB 400 4277023 YP_748954.1 CDS Sfri_0253 NC_008345.1 280512 281339 R KEGG: son:SO4611 hypothetical protein; hypothetical protein complement(280512..281339) Shewanella frigidimarina NCIMB 400 4277024 YP_748955.1 CDS Sfri_0254 NC_008345.1 281326 281505 D KEGG: son:SO4610 hypothetical protein; hypothetical protein 281326..281505 Shewanella frigidimarina NCIMB 400 4277025 YP_748956.1 CDS Sfri_0255 NC_008345.1 281522 282397 R PFAM: cytochrome c oxidase, subunit III; KEGG: son:SO4609 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III complement(281522..282397) Shewanella frigidimarina NCIMB 400 4277026 YP_748957.1 CDS Sfri_0256 NC_008345.1 282394 282957 R involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein complement(282394..282957) Shewanella frigidimarina NCIMB 400 4277027 YP_748958.1 CDS Sfri_0257 NC_008345.1 282959 284554 R PFAM: cytochrome c oxidase, subunit I; KEGG: son:SO4607 cytochrome c oxidase, subunit I; cytochrome-c oxidase complement(282959..284554) Shewanella frigidimarina NCIMB 400 4277028 YP_748959.1 CDS Sfri_0258 NC_008345.1 284564 286150 R PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: son:SO4606 cytochrome c oxidase, subunit II; cytochrome c oxidase, subunit II complement(284564..286150) Shewanella frigidimarina NCIMB 400 4277029 YP_748960.1 CDS Sfri_0259 NC_008345.1 286546 287052 R KEGG: son:SO4604 hypothetical protein; hypothetical protein complement(286546..287052) Shewanella frigidimarina NCIMB 400 4277030 YP_748961.1 CDS Sfri_0260 NC_008345.1 287049 287663 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(287049..287663) Shewanella frigidimarina NCIMB 400 4277031 YP_748962.1 CDS Sfri_0261 NC_008345.1 287928 290351 D PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 287928..290351 Shewanella frigidimarina NCIMB 400 4277032 YP_748963.1 CDS Sfri_0262 NC_008345.1 290351 291607 D TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: son:SO4601 tryptophan-specific transport protein; aromatic amino acid transporter 290351..291607 Shewanella frigidimarina NCIMB 400 4277033 YP_748964.1 CDS Sfri_0263 NC_008345.1 291753 292529 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO4600 antigen, putative; glyoxalase/bleomycin resistance protein/dioxygenase 291753..292529 Shewanella frigidimarina NCIMB 400 4278066 YP_748965.1 CDS Sfri_0264 NC_008345.1 292779 293042 D hypothetical protein 292779..293042 Shewanella frigidimarina NCIMB 400 4278067 YP_748966.1 CDS Sfri_0265 NC_008345.1 293039 293305 D hypothetical protein 293039..293305 Shewanella frigidimarina NCIMB 400 4278068 YP_748967.1 CDS Sfri_0266 NC_008345.1 293402 296545 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SOA0153 heavy metal efflux pump, CzcA family; heavy metal efflux pump, CzcA family protein complement(293402..296545) Shewanella frigidimarina NCIMB 400 4278069 YP_748968.1 CDS Sfri_0267 NC_008345.1 296557 298065 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SOA0154 heavy metal efflux protein, putative; RND family efflux transporter MFP subunit complement(296557..298065) Shewanella frigidimarina NCIMB 400 4278070 YP_748969.1 CDS Sfri_0268 NC_008345.1 298161 298478 R KEGG: son:SO4597 heavy metal efflux system protein, putative; hypothetical protein complement(298161..298478) Shewanella frigidimarina NCIMB 400 4278071 YP_748970.1 CDS Sfri_0269 NC_008345.1 298584 299030 R KEGG: son:SOA0156 hypothetical protein; hypothetical protein complement(298584..299030) Shewanella frigidimarina NCIMB 400 4278072 YP_748971.1 CDS Sfri_0270 NC_008345.1 299214 299939 R KEGG: cps:CPS_0735 hypothetical protein; hypothetical protein complement(299214..299939) Shewanella frigidimarina NCIMB 400 4278073 YP_748972.1 CDS Sfri_0271 NC_008345.1 299939 300697 R KEGG: cps:CPS_0734 hypothetical protein; hypothetical protein complement(299939..300697) Shewanella frigidimarina NCIMB 400 4278074 YP_748973.1 CDS Sfri_0272 NC_008345.1 301407 301970 D PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO4591 tetraheme cytochrome c; NapC/NirT cytochrome c domain-containing protein 301407..301970 Shewanella frigidimarina NCIMB 400 4278075 YP_748974.1 CDS Sfri_0273 NC_008345.1 302050 302352 R hypothetical protein complement(302050..302352) Shewanella frigidimarina NCIMB 400 4278076 YP_748975.1 CDS Sfri_0274 NC_008345.1 302357 302956 R TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: son:SO4587 putative methylase; putative methyltransferase complement(302357..302956) Shewanella frigidimarina NCIMB 400 4278077 YP_748976.1 CDS Sfri_0275 NC_008345.1 303137 304900 D KEGG: son:SO4586 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 303137..304900 Shewanella frigidimarina NCIMB 400 4278078 YP_748977.1 CDS Sfri_0276 NC_008345.1 304904 305593 D KEGG: son:SO4585 cell division ABC transporter, ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 304904..305593 Shewanella frigidimarina NCIMB 400 4278079 YP_748978.1 CDS Sfri_0277 NC_008345.1 305590 306555 D PFAM: protein of unknown function DUF214; KEGG: son:SO4584 cell division ABC transporter, permease protein FtsX; hypothetical protein 305590..306555 Shewanella frigidimarina NCIMB 400 4278080 YP_748979.1 CDS Sfri_0278 NC_008345.1 306788 307645 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 306788..307645 Shewanella frigidimarina NCIMB 400 4278081 YP_748980.1 CDS Sfri_0279 NC_008345.1 307891 309438 R TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO4576 O-succinylbenzoic acid--CoA ligase; o-succinylbenzoate--CoA ligase complement(307891..309438) Shewanella frigidimarina NCIMB 400 4278082 YP_748981.1 CDS Sfri_0280 NC_008345.1 309438 310532 R catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase complement(309438..310532) Shewanella frigidimarina NCIMB 400 4278083 YP_748982.1 CDS Sfri_0281 NC_008345.1 310535 311347 R PFAM: alpha/beta hydrolase fold; KEGG: son:SO4574 hydrolase, alpha/beta fold family; alpha/beta hydrolase complement(310535..311347) Shewanella frigidimarina NCIMB 400 4278556 YP_748983.1 CDS Sfri_0282 NC_008345.1 311347 313086 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(311347..313086) Shewanella frigidimarina NCIMB 400 4278557 YP_748984.1 CDS Sfri_0283 NC_008345.1 313307 314140 D KEGG: son:SO4563 hypothetical protein; putative signal transduction protein 313307..314140 Shewanella frigidimarina NCIMB 400 4278558 YP_748985.1 CDS Sfri_0284 NC_008345.1 314189 314662 R PFAM: regulatory protein, AsnC/Lrp family; KEGG: son:SO4567 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(314189..314662) Shewanella frigidimarina NCIMB 400 4278559 YP_748986.1 CDS Sfri_0285 NC_008345.1 314791 316074 D uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH 314791..316074 Shewanella frigidimarina NCIMB 400 4278560 YP_748987.1 CDS Sfri_0286 NC_008345.1 316086 316535 R PFAM: protein of unknown function DUF1332; KEGG: son:SO4562 hypothetical protein; hypothetical protein complement(316086..316535) Shewanella frigidimarina NCIMB 400 4278561 YP_748988.1 CDS Sfri_0287 NC_008345.1 316665 317228 R KEGG: son:SO4561 hypothetical protein; hypothetical protein complement(316665..317228) Shewanella frigidimarina NCIMB 400 4278562 YP_748989.1 CDS Sfri_0288 NC_008345.1 317399 318121 D KEGG: son:SO4560 hypothetical protein; hypothetical protein 317399..318121 Shewanella frigidimarina NCIMB 400 4278563 YP_748990.1 CDS Sfri_0289 NC_008345.1 318154 319662 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4559 hypothetical protein; Sel1 domain-containing protein 318154..319662 Shewanella frigidimarina NCIMB 400 4278564 YP_748991.1 CDS Sfri_0290 NC_008345.1 319895 321751 D PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cps:CPS_3372 putative transporter; TrkA domain-containing protein 319895..321751 Shewanella frigidimarina NCIMB 400 4278565 YP_748992.1 CDS Sfri_0291 NC_008345.1 322133 322510 D hypothetical protein 322133..322510 Shewanella frigidimarina NCIMB 400 4278566 YP_748993.1 CDS Sfri_0292 NC_008345.1 322507 322740 D hypothetical protein 322507..322740 Shewanella frigidimarina NCIMB 400 4278567 YP_748994.1 CDS Sfri_0293 NC_008345.1 323577 324215 R PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; Male sterility C-terminal; KEGG: pha:PSHAa2082 hypothetical protein; NAD-dependent epimerase/dehydratase complement(323577..324215) Shewanella frigidimarina NCIMB 400 4278568 YP_748995.1 CDS Sfri_0294 NC_008345.1 324562 324900 R hypothetical protein complement(324562..324900) Shewanella frigidimarina NCIMB 400 4278569 YP_748996.1 CDS Sfri_0295 NC_008345.1 325302 325619 R hypothetical protein complement(325302..325619) Shewanella frigidimarina NCIMB 400 4278570 YP_748997.1 CDS Sfri_0296 NC_008345.1 325730 326713 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4556 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(325730..326713) Shewanella frigidimarina NCIMB 400 4278571 YP_748998.1 CDS Sfri_0297 NC_008345.1 326840 328045 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4555 drug resistance transporter, Bcr/CflA family protein; Bcr/CflA subfamily drug resistance transporter 326840..328045 Shewanella frigidimarina NCIMB 400 4278572 YP_748999.1 CDS Sfri_0298 NC_008345.1 328127 329092 R hypothetical protein complement(328127..329092) Shewanella frigidimarina NCIMB 400 4277193 YP_749000.1 CDS Sfri_0299 NC_008345.1 329194 329805 D PFAM: DTW domain containing protein; KEGG: son:SO4554 hypothetical protein; DTW domain-containing protein 329194..329805 Shewanella frigidimarina NCIMB 400 4277194 YP_749001.1 CDS Sfri_0300 NC_008345.1 329811 330194 D KEGG: son:SO4551 hypothetical protein; hypothetical protein 329811..330194 Shewanella frigidimarina NCIMB 400 4277195 YP_749002.1 CDS Sfri_0301 NC_008345.1 330238 330882 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4550 methyltransferase domain protein; methyltransferase type 11 330238..330882 Shewanella frigidimarina NCIMB 400 4277196 YP_749003.1 CDS Sfri_0302 NC_008345.1 331001 332314 D KEGG: ilo:IL0586 metal-dependent hydrolase of the aminoacylase-2/carboxypeptidase-Z family; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 331001..332314 Shewanella frigidimarina NCIMB 400 4277197 YP_749004.1 CDS Sfri_0303 NC_008345.1 332400 333728 D PFAM: peptidase M16 domain protein; KEGG: son:SO4537.2 hypothetical Zn-dependent peptidase; peptidase M16 domain-containing protein 332400..333728 Shewanella frigidimarina NCIMB 400 4277198 YP_749005.1 CDS Sfri_0304 NC_008345.1 333725 335176 D PFAM: peptidase M16 domain protein; KEGG: ppr:PBPRB1337 hypothetical protein; peptidase M16 domain-containing protein 333725..335176 Shewanella frigidimarina NCIMB 400 4277199 YP_749006.1 CDS Sfri_0305 NC_008345.1 335401 335964 D KEGG: son:SO4535 hypothetical protein; hypothetical protein 335401..335964 Shewanella frigidimarina NCIMB 400 4277200 YP_749007.1 CDS Sfri_0306 NC_008345.1 335993 336331 R KEGG: son:SO3676 hypothetical protein; hypothetical protein complement(335993..336331) Shewanella frigidimarina NCIMB 400 4277201 YP_749008.1 CDS Sfri_0307 NC_008345.1 336331 336795 R TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO4529 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase complement(336331..336795) Shewanella frigidimarina NCIMB 400 4277202 YP_749009.1 CDS Sfri_0308 NC_008345.1 337046 338425 R PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa2520 mechanosensitive channel protein; MscS mechanosensitive ion channel complement(337046..338425) Shewanella frigidimarina NCIMB 400 4277203 YP_749010.1 CDS Sfri_0309 NC_008345.1 338743 338901 D PFAM: protein of unknown function UPF0057; KEGG: rru:Rru_A2519 hypothetical protein; hypothetical protein 338743..338901 Shewanella frigidimarina NCIMB 400 4277204 YP_749011.1 CDS Sfri_0310 NC_008345.1 339162 340562 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4478 sensor protein CpxA; periplasmic sensor signal transduction histidine kinase complement(339162..340562) Shewanella frigidimarina NCIMB 400 4277205 YP_749012.1 CDS Sfri_0311 NC_008345.1 340562 341248 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4477 transcriptional regulatory protein CpxR; two component transcriptional regulator, winged helix family protein complement(340562..341248) Shewanella frigidimarina NCIMB 400 4277206 YP_749013.1 CDS Sfri_0312 NC_008345.1 341365 342804 R KEGG: son:SO0975 hypothetical protein; hypothetical protein complement(341365..342804) Shewanella frigidimarina NCIMB 400 4277207 YP_749014.1 CDS Sfri_0313 NC_008345.1 343068 343559 D KEGG: son:SO4476 spheroplast protein y precursor, putative; spheroplast protein y precursor, putative 343068..343559 Shewanella frigidimarina NCIMB 400 4277208 YP_749015.1 CDS Sfri_0314 NC_008345.1 343760 344629 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: son:SO4475 cation efflux family protein; cation diffusion facilitator family transporter 343760..344629 Shewanella frigidimarina NCIMB 400 4277209 YP_749016.1 CDS Sfri_0315 NC_008345.1 344741 345499 R PFAM: catalytic domain of components of various dehydrogenase complexes; KEGG: xft:PD1809 dihydrolipoamide acetyltranferase; dihydrolipoyllysine-residue succinyltransferase complement(344741..345499) Shewanella frigidimarina NCIMB 400 4277210 YP_749017.1 CDS Sfri_0316 NC_008345.1 345514 345816 R KEGG: pca:Pcar_0332 hypothetical protein; hypothetical protein complement(345514..345816) Shewanella frigidimarina NCIMB 400 4277403 YP_749018.1 CDS Sfri_0317 NC_008345.1 345829 346128 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: reu:Reut_B5552 alpha/beta hydrolase fold:biotin/lipoyl attachment; biotin/lipoyl attachment domain-containing protein complement(345829..346128) Shewanella frigidimarina NCIMB 400 4277404 YP_749019.1 CDS Sfri_0318 NC_008345.1 346128 347138 R PFAM: Transketolase, central region; Transketolase domain protein; KEGG: reu:Reut_B5551 transketolase, central region:transketolase, C-terminal; transketolase, central region complement(346128..347138) Shewanella frigidimarina NCIMB 400 4277405 YP_749020.1 CDS Sfri_0319 NC_008345.1 347152 348126 R PFAM: dehydrogenase, E1 component; KEGG: bur:Bcep18194_A5140 pyruvate dehydrogenase (lipoamide); dehydrogenase, E1 component complement(347152..348126) Shewanella frigidimarina NCIMB 400 4277406 YP_749021.1 CDS Sfri_0320 NC_008345.1 349239 350651 R KEGG: son:SO4472 nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator, NtrC, Fis family complement(349239..350651) Shewanella frigidimarina NCIMB 400 4277407 YP_749022.1 CDS Sfri_0321 NC_008345.1 350688 351725 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4471 nitrogen regulation protein; signal transduction histidine kinase, nitrogen specific, NtrB complement(350688..351725) Shewanella frigidimarina NCIMB 400 4277408 YP_749023.1 CDS Sfri_0322 NC_008345.1 351865 352389 R KEGG: son:SO4470 hypothetical protein; hypothetical protein complement(351865..352389) Shewanella frigidimarina NCIMB 400 4277409 YP_749024.1 CDS Sfri_0323 NC_008345.1 352521 352832 R PFAM: protein of unknown function DUF1255; KEGG: son:SO4467 hypothetical protein; hypothetical protein complement(352521..352832) Shewanella frigidimarina NCIMB 400 4277410 YP_749025.1 CDS Sfri_0324 NC_008345.1 353180 354991 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: son:SO4408 virulence regulator BipA; GTP-binding protein TypA complement(353180..354991) Shewanella frigidimarina NCIMB 400 4277411 YP_749026.1 CDS glnA NC_008345.1 355472 356881 D forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 355472..356881 Shewanella frigidimarina NCIMB 400 4277412 YP_749027.1 CDS Sfri_0326 NC_008345.1 357125 357325 D KEGG: rfr:Rfer_2487 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 357125..357325 Shewanella frigidimarina NCIMB 400 4277413 YP_749028.1 CDS Sfri_0327 NC_008345.1 357379 357918 D PFAM: methylation site containing protein; KEGG: hch:HCH_06146 type II secretory pathway, pseudopilin PulG; methylation site containing protein 357379..357918 Shewanella frigidimarina NCIMB 400 4277414 YP_749029.1 CDS Sfri_0328 NC_008345.1 358111 358581 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: pha:PSHAa0053 transcriptional regulator; AsnC family transcriptional regulator 358111..358581 Shewanella frigidimarina NCIMB 400 4277415 YP_749030.1 CDS Sfri_0329 NC_008345.1 358697 359344 R KEGG: son:SO4403 hypothetical protein; hypothetical protein complement(358697..359344) Shewanella frigidimarina NCIMB 400 4277416 YP_749031.1 CDS Sfri_0330 NC_008345.1 359407 359631 R KEGG: son:SO4402 hypothetical protein; hypothetical protein complement(359407..359631) Shewanella frigidimarina NCIMB 400 4277417 YP_749032.1 CDS rbn NC_008345.1 359737 360699 D RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 359737..360699 Shewanella frigidimarina NCIMB 400 4277418 YP_749033.1 CDS Sfri_0332 NC_008345.1 360849 361286 D PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: son:SO4398 D-Tyr-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase 360849..361286 Shewanella frigidimarina NCIMB 400 4277419 YP_749034.1 CDS Sfri_0333 NC_008345.1 361356 361850 D TIGRFAM: thioesterase domain, putative; KEGG: son:SO4397 hypothetical acetyltransferase; thioesterase domain-containing protein 361356..361850 Shewanella frigidimarina NCIMB 400 4277141 YP_749035.1 CDS Sfri_0334 NC_008345.1 362004 362597 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 362004..362597 Shewanella frigidimarina NCIMB 400 4277142 YP_749036.1 CDS Sfri_0335 NC_008345.1 362853 363464 D PFAM: electron transport protein SCO1/SenC; KEGG: sde:Sde_0045 GGDEF; electron transport protein SCO1/SenC 362853..363464 Shewanella frigidimarina NCIMB 400 4277143 YP_749037.1 CDS Sfri_0336 NC_008345.1 363475 364977 D PFAM: chemotaxis sensory transducer; KEGG: pha:PSHAb0277 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 363475..364977 Shewanella frigidimarina NCIMB 400 4277144 YP_749038.1 CDS Sfri_0337 NC_008345.1 365049 366275 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II complement(365049..366275) Shewanella frigidimarina NCIMB 400 4277145 YP_749039.1 CDS fabG NC_008345.1 366272 366997 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(366272..366997) Shewanella frigidimarina NCIMB 400 4277146 YP_749040.1 CDS Sfri_0339 NC_008345.1 367061 367552 R PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: son:SO4381 thioester dehydrase family protein; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ complement(367061..367552) Shewanella frigidimarina NCIMB 400 4277147 YP_749041.1 CDS Sfri_0340 NC_008345.1 367557 368759 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(367557..368759) Shewanella frigidimarina NCIMB 400 4277148 YP_749042.1 CDS Sfri_0341 NC_008345.1 368838 369458 R KEGG: son:SO4379 hypothetical protein; hypothetical protein complement(368838..369458) Shewanella frigidimarina NCIMB 400 4277149 YP_749043.1 CDS Sfri_0342 NC_008345.1 369448 370716 R PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: son:SO4378 FAD-binding protein; tryptophan halogenase complement(369448..370716) Shewanella frigidimarina NCIMB 400 4277150 YP_749044.1 CDS Sfri_0343 NC_008345.1 370706 373114 R KEGG: son:SO4377 hypothetical protein; hypothetical protein complement(370706..373114) Shewanella frigidimarina NCIMB 400 4277151 YP_749045.1 CDS Sfri_0344 NC_008345.1 373114 373929 R KEGG: son:SO4376 hypothetical protein; hypothetical protein complement(373114..373929) Shewanella frigidimarina NCIMB 400 4277152 YP_749046.1 CDS Sfri_0345 NC_008345.1 373929 374360 R KEGG: son:SO4375 hypothetical 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase complement(373929..374360) Shewanella frigidimarina NCIMB 400 4277153 YP_749047.1 CDS Sfri_0346 NC_008345.1 374361 375923 R PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO4374 histidine ammonia-lyase, putative; histidine ammonia-lyase complement(374361..375923) Shewanella frigidimarina NCIMB 400 4277154 YP_749048.1 CDS Sfri_0347 NC_008345.1 375928 377748 R PFAM: glycosyl transferase, family 2; lipid A biosynthesis acyltransferase; KEGG: son:SO4373 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(375928..377748) Shewanella frigidimarina NCIMB 400 4277155 YP_749049.1 CDS Sfri_0348 NC_008345.1 377745 378137 R KEGG: son:SO4372 thioester dehydrase family protein; thioester dehydrase family protein complement(377745..378137) Shewanella frigidimarina NCIMB 400 4277156 YP_749050.1 CDS Sfri_0349 NC_008345.1 378130 379497 R KEGG: son:SO4371 hypothetical protein; hypothetical protein complement(378130..379497) Shewanella frigidimarina NCIMB 400 4277157 YP_749051.1 CDS Sfri_0350 NC_008345.1 379490 380041 R KEGG: son:SO4370 hypothetical protein; hypothetical protein complement(379490..380041) Shewanella frigidimarina NCIMB 400 4277158 YP_749052.1 CDS Sfri_0351 NC_008345.1 380041 380289 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(380041..380289) Shewanella frigidimarina NCIMB 400 4277595 YP_749053.1 CDS Sfri_0352 NC_008345.1 380298 380552 R KEGG: son:SO4368 acyl carrier protein, putative; hypothetical protein complement(380298..380552) Shewanella frigidimarina NCIMB 400 4277596 YP_749054.1 CDS Sfri_0353 NC_008345.1 380581 381435 R PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO4367 acyltransferase family protein; phospholipid/glycerol acyltransferase complement(380581..381435) Shewanella frigidimarina NCIMB 400 4277597 YP_749055.1 CDS Sfri_0354 NC_008345.1 381428 382207 R KEGG: son:SO4366 hypothetical protein; hypothetical protein complement(381428..382207) Shewanella frigidimarina NCIMB 400 4277598 YP_749056.1 CDS Sfri_0355 NC_008345.1 382456 383343 R KEGG: son:SO4365 hypothetical protein; hypothetical protein complement(382456..383343) Shewanella frigidimarina NCIMB 400 4277599 YP_749057.1 CDS Sfri_0356 NC_008345.1 383480 385597 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(383480..385597) Shewanella frigidimarina NCIMB 400 4277600 YP_749058.1 CDS Sfri_0357 NC_008345.1 385696 386304 R PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO0351 DNA-binding response regulator, LuxR family; two component transcriptional regulator, LuxR family protein complement(385696..386304) Shewanella frigidimarina NCIMB 400 4277601 YP_749059.1 CDS Sfri_0358 NC_008345.1 386301 387395 R PFAM: histidine kinase, dimerisation and phosphoacceptor region; KEGG: son:SO0352 sensor histidine kinase, putative; histidine kinase, dimerisation and phosphoacceptor region complement(386301..387395) Shewanella frigidimarina NCIMB 400 4277602 YP_749060.1 CDS Sfri_0359 NC_008345.1 387473 388165 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0353 TPR domain protein; TPR repeat-containing protein complement(387473..388165) Shewanella frigidimarina NCIMB 400 4277603 YP_749061.1 CDS Sfri_0360 NC_008345.1 388373 389302 R TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: son:SO0354 sodium/calcium exchanger; Na+/Ca+ antiporter, CaCA family protein complement(388373..389302) Shewanella frigidimarina NCIMB 400 4277604 YP_749062.1 CDS Sfri_0361 NC_008345.1 389443 391170 R PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0355 AMP-binding protein; AMP-dependent synthetase and ligase complement(389443..391170) Shewanella frigidimarina NCIMB 400 4277605 YP_749063.1 CDS Sfri_0362 NC_008345.1 391345 391728 R TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: son:SO0358 endoribonuclease L-PSP, putative; putative endoribonuclease L-PSP complement(391345..391728) Shewanella frigidimarina NCIMB 400 4277606 YP_749064.1 CDS Sfri_0363 NC_008345.1 391759 393867 R KEGG: son:SO0359 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase complement(391759..393867) Shewanella frigidimarina NCIMB 400 4277607 YP_749065.1 CDS rpoZ NC_008345.1 393881 394159 R promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(393881..394159) Shewanella frigidimarina NCIMB 400 4277608 YP_749066.1 CDS gmk NC_008345.1 394220 394843 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(394220..394843) Shewanella frigidimarina NCIMB 400 4277609 YP_749067.1 CDS Sfri_0366 NC_008345.1 395217 396506 D KEGG: son:SO0362 hypothetical protein; hypothetical protein 395217..396506 Shewanella frigidimarina NCIMB 400 4277610 YP_749068.1 CDS Sfri_0367 NC_008345.1 396582 397652 D PFAM: aminoglycoside phosphotransferase; KEGG: son:SO0364 hypothetical protein; aminoglycoside phosphotransferase 396582..397652 Shewanella frigidimarina NCIMB 400 4277611 YP_749069.1 CDS Sfri_0368 NC_008345.1 397787 398488 D manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 397787..398488 Shewanella frigidimarina NCIMB 400 4278784 YP_749070.1 CDS Sfri_0369 NC_008345.1 398568 401225 R TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: son:SO0280 penicillin-binding protein 1A; penicillin-binding protein, 1A family protein complement(398568..401225) Shewanella frigidimarina NCIMB 400 4278785 YP_749071.1 CDS Sfri_0370 NC_008345.1 401339 402418 D TIGRFAM: type IV pilus assembly protein PilM; KEGG: son:SO0281 type IV pilus biogenesis protein PilM; type IV pilus assembly protein PilM 401339..402418 Shewanella frigidimarina NCIMB 400 4278786 YP_749072.1 CDS Sfri_0371 NC_008345.1 402406 402990 D PFAM: Fimbrial assembly family protein; KEGG: son:SO0282 type IV pilus biogenesis protein PilN; fimbrial assembly family protein 402406..402990 Shewanella frigidimarina NCIMB 400 4278787 YP_749073.1 CDS Sfri_0372 NC_008345.1 402987 403604 D PFAM: Pilus assembly protein, PilO; KEGG: son:SO0283 type IV pilus biogenesis protein PilO; pilus assembly protein, PilO 402987..403604 Shewanella frigidimarina NCIMB 400 4278788 YP_749074.1 CDS Sfri_0373 NC_008345.1 403604 404122 D PFAM: Pilus assembly protein, PilQ; KEGG: son:SO0284 type IV pilus biogenesis protein PilP; pilus assembly protein, PilQ 403604..404122 Shewanella frigidimarina NCIMB 400 4278789 YP_749075.1 CDS Sfri_0374 NC_008345.1 404144 406192 D TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain protein; KEGG: son:SO0285 type IV pilus biogenesis protein PilQ; type IV pilus secretin PilQ 404144..406192 Shewanella frigidimarina NCIMB 400 4278790 YP_749076.1 CDS aroK NC_008345.1 406639 407154 D type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 406639..407154 Shewanella frigidimarina NCIMB 400 4278791 YP_749077.1 CDS aroB NC_008345.1 407163 408239 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 407163..408239 Shewanella frigidimarina NCIMB 400 4278792 YP_749078.1 CDS Sfri_0377 NC_008345.1 408290 409693 D PFAM: Sporulation domain protein; KEGG: son:SO0288 DamX domain protein; sporulation domain-containing protein 408290..409693 Shewanella frigidimarina NCIMB 400 4278793 YP_749079.1 CDS Sfri_0378 NC_008345.1 409826 410662 D KEGG: son:SO0289 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 409826..410662 Shewanella frigidimarina NCIMB 400 4278794 YP_749080.1 CDS Sfri_0379 NC_008345.1 410695 410874 R KEGG: son:SO0290 hypothetical protein; hypothetical protein complement(410695..410874) Shewanella frigidimarina NCIMB 400 4278795 YP_749081.1 CDS Sfri_0380 NC_008345.1 410874 411269 R KEGG: son:SO0291 hypothetical protein; hypothetical protein complement(410874..411269) Shewanella frigidimarina NCIMB 400 4278796 YP_749082.1 CDS Sfri_0381 NC_008345.1 411523 412194 D PFAM: ribulose-phosphate 3-epimerase; KEGG: son:SO0292 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 411523..412194 Shewanella frigidimarina NCIMB 400 4278797 YP_749083.1 CDS Sfri_0382 NC_008345.1 412225 412914 D TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0293 phosphoglycolate phosphatase; phosphoglycolate phosphatase 412225..412914 Shewanella frigidimarina NCIMB 400 4278798 YP_749084.1 CDS Sfri_0383 NC_008345.1 412955 413953 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 412955..413953 Shewanella frigidimarina NCIMB 400 4278799 YP_749085.1 CDS Sfri_0384 NC_008345.1 413999 414868 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0295 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(413999..414868) Shewanella frigidimarina NCIMB 400 4278800 YP_749086.1 CDS Sfri_0385 NC_008345.1 415010 415885 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO0296 integral membrane domain protein; hypothetical protein 415010..415885 Shewanella frigidimarina NCIMB 400 4278801 YP_749087.1 CDS Sfri_0386 NC_008345.1 415922 416491 R PFAM: transport-associated; KEGG: son:SO0297 lipoprotein, putative; transport-associated complement(415922..416491) Shewanella frigidimarina NCIMB 400 4278226 YP_749088.1 CDS Sfri_0387 NC_008345.1 416488 417081 R TIGRFAM: phosphoheptose isomerase; KEGG: son:SO0298 phosphoheptose isomerase; phosphoheptose isomerase complement(416488..417081) Shewanella frigidimarina NCIMB 400 4278227 YP_749089.1 CDS Sfri_0388 NC_008345.1 417211 417537 R PFAM: protein of unknown function UPF0102; KEGG: son:SO0299 predicted endonuclease; hypothetical protein complement(417211..417537) Shewanella frigidimarina NCIMB 400 4278228 YP_749090.1 CDS Sfri_0389 NC_008345.1 417534 419357 R PFAM: LppC family lipoprotein; KEGG: son:SO0300 lipoprotein, putative; LppC family lipoprotein complement(417534..419357) Shewanella frigidimarina NCIMB 400 4278229 YP_749091.1 CDS Sfri_0390 NC_008345.1 419447 420289 D TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO0301 hypothetical methyltransferase; hypothetical protein 419447..420289 Shewanella frigidimarina NCIMB 400 4278230 YP_749092.1 CDS Sfri_0391 NC_008345.1 421132 423270 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcb:XC_2846 iron receptor; TonB-dependent siderophore receptor 421132..423270 Shewanella frigidimarina NCIMB 400 4278231 YP_749093.1 CDS Sfri_0392 NC_008345.1 423365 425518 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sde:Sde_2885 histidine kinase; TonB-dependent receptor, plug complement(423365..425518) Shewanella frigidimarina NCIMB 400 4278232 YP_749094.1 CDS Sfri_0393 NC_008345.1 426017 427696 R KEGG: son:SO0306 hypothetical protein; hypothetical protein complement(426017..427696) Shewanella frigidimarina NCIMB 400 4278233 YP_749095.1 CDS Sfri_0394 NC_008345.1 427952 429172 R PFAM: protein of unknown function DUF1212; KEGG: son:SO0308 hypothetical protein; hypothetical protein complement(427952..429172) Shewanella frigidimarina NCIMB 400 4278234 YP_749096.1 CDS Sfri_0395 NC_008345.1 429336 429731 D KEGG: son:SO0309 hypothetical protein; hypothetical protein 429336..429731 Shewanella frigidimarina NCIMB 400 4278235 YP_749097.1 CDS Sfri_0396 NC_008345.1 429934 432255 D PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: son:SO0311 hypothetical Fe-S oxidoreductase; hypothetical protein 429934..432255 Shewanella frigidimarina NCIMB 400 4278236 YP_749098.1 CDS Sfri_0397 NC_008345.1 432456 433058 D KEGG: son:SO0321 hypothetical protein; hypothetical protein 432456..433058 Shewanella frigidimarina NCIMB 400 4278237 YP_749099.1 CDS Sfri_0399 NC_008345.1 433762 434805 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: son:SO4548 transposase, IS110 family; transposase IS116/IS110/IS902 family protein complement(433762..434805) Shewanella frigidimarina NCIMB 400 4278238 YP_749100.1 CDS Sfri_0400 NC_008345.1 435379 436218 D hypothetical protein 435379..436218 Shewanella frigidimarina NCIMB 400 4278239 YP_749101.1 CDS Sfri_0401 NC_008345.1 436304 437137 D KEGG: lpn:lpg2572 hypothetical protein; hypothetical protein 436304..437137 Shewanella frigidimarina NCIMB 400 4278240 YP_749102.1 CDS Sfri_0402 NC_008345.1 437982 438563 R KEGG: son:SO0322 hypothetical protein; hypothetical protein complement(437982..438563) Shewanella frigidimarina NCIMB 400 4278241 YP_749103.1 CDS Sfri_0403 NC_008345.1 438728 439666 R KEGG: son:SO0323 hypothetical protein; hypothetical protein complement(438728..439666) Shewanella frigidimarina NCIMB 400 4278242 YP_749104.1 CDS Sfri_0404 NC_008345.1 439731 440123 R KEGG: son:SO0324 hypothetical protein; hypothetical protein complement(439731..440123) Shewanella frigidimarina NCIMB 400 4277736 YP_749105.1 CDS Sfri_0405 NC_008345.1 440484 441431 D KEGG: son:SO0326 hypothetical protein; hypothetical protein 440484..441431 Shewanella frigidimarina NCIMB 400 4277737 YP_749106.1 CDS Sfri_0406 NC_008345.1 441539 441871 D hypothetical protein 441539..441871 Shewanella frigidimarina NCIMB 400 4277738 YP_749107.1 CDS Sfri_0407 NC_008345.1 441861 443342 D PFAM: protein of unknown function UPF0061; KEGG: son:SO0330 hypothetical protein; hypothetical protein 441861..443342 Shewanella frigidimarina NCIMB 400 4277739 YP_749108.1 CDS Sfri_0408 NC_008345.1 443368 443670 D KEGG: son:SO0331 hypothetical protein; hypothetical protein 443368..443670 Shewanella frigidimarina NCIMB 400 4277740 YP_749109.1 CDS Sfri_0409 NC_008345.1 443681 444682 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 443681..444682 Shewanella frigidimarina NCIMB 400 4277741 YP_749110.1 CDS Sfri_0410 NC_008345.1 444814 445431 D PFAM: DSBA oxidoreductase; KEGG: son:SO0333 thiol:disulfide interchange protein DsbA; DSBA oxidoreductase 444814..445431 Shewanella frigidimarina NCIMB 400 4277742 YP_749111.1 CDS Sfri_0411 NC_008345.1 445936 446139 D PFAM: protein of unknown function DUF1107; KEGG: son:SO0334 hypothetical protein; hypothetical protein 445936..446139 Shewanella frigidimarina NCIMB 400 4277743 YP_749112.1 CDS Sfri_0412 NC_008345.1 446145 446366 R PFAM: protein of unknown function DUF904; KEGG: son:SO0335 hypothetical protein; hypothetical protein complement(446145..446366) Shewanella frigidimarina NCIMB 400 4277744 YP_749113.1 CDS Sfri_0413 NC_008345.1 446539 446892 D PFAM: Endoribonuclease L-PSP; KEGG: son:SO0337 hypothetical translation initiation inhibitor, YjgF family; endoribonuclease L-PSP 446539..446892 Shewanella frigidimarina NCIMB 400 4277745 YP_749114.1 CDS Sfri_0414 NC_008345.1 447128 448219 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 447128..448219 Shewanella frigidimarina NCIMB 400 4277746 YP_749115.1 CDS Sfri_0415 NC_008345.1 448276 452736 R KEGG: son:SO0341 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(448276..452736) Shewanella frigidimarina NCIMB 400 4277747 YP_749116.1 CDS Sfri_0416 NC_008345.1 453023 453928 R PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0347 acyltransferase family protein; putative acyltransferase complement(453023..453928) Shewanella frigidimarina NCIMB 400 4277748 YP_749117.1 CDS Sfri_0417 NC_008345.1 453935 454831 R PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0348 acyltransferase family protein; putative acyltransferase complement(453935..454831) Shewanella frigidimarina NCIMB 400 4277749 YP_749118.1 CDS Sfri_0418 NC_008345.1 454911 456434 R KEGG: son:SO0349 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI complement(454911..456434) Shewanella frigidimarina NCIMB 400 4277750 YP_749119.1 CDS Sfri_0419 NC_008345.1 456801 458108 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO4351 CBS domain protein; hypothetical protein 456801..458108 Shewanella frigidimarina NCIMB 400 4277751 YP_749120.1 CDS Sfri_0420 NC_008345.1 458141 459013 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY complement(458141..459013) Shewanella frigidimarina NCIMB 400 4277752 YP_749121.1 CDS Sfri_0421 NC_008345.1 459222 460703 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 459222..460703 Shewanella frigidimarina NCIMB 400 4277753 YP_749122.1 CDS Sfri_0422 NC_008345.1 461286 462953 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 461286..462953 Shewanella frigidimarina NCIMB 400 4278399 YP_749123.1 CDS ilvM NC_008345.1 462950 463207 D KEGG: son:SO4346 acetolactate synthase small subunit; acetolactate synthase 2 regulatory subunit 462950..463207 Shewanella frigidimarina NCIMB 400 4278400 YP_749124.1 CDS Sfri_0424 NC_008345.1 463340 465199 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 463340..465199 Shewanella frigidimarina NCIMB 400 4278401 YP_749125.1 CDS Sfri_0425 NC_008345.1 465201 466772 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 465201..466772 Shewanella frigidimarina NCIMB 400 4278402 YP_749126.1 CDS Sfri_0426 NC_008345.1 467208 468350 D PFAM: aminotransferase, class V; KEGG: son:SO4343 aminotransferase, class V; alanine--glyoxylate transaminase 467208..468350 Shewanella frigidimarina NCIMB 400 4278403 YP_749127.1 CDS Sfri_0427 NC_008345.1 468469 468720 R PFAM: protein of unknown function DUF526; KEGG: son:SO4329 hypothetical protein; hypothetical protein complement(468469..468720) Shewanella frigidimarina NCIMB 400 4278404 YP_749128.1 CDS Sfri_0428 NC_008345.1 468864 470876 D TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: son:SO4325 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep 468864..470876 Shewanella frigidimarina NCIMB 400 4278405 YP_749129.1 CDS Sfri_0429 NC_008345.1 470901 473525 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO4324 GGDEF domain protein; GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(470901..473525) Shewanella frigidimarina NCIMB 400 4278406 YP_749130.1 CDS Sfri_0430 NC_008345.1 474956 476878 R PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO4323 GGDEF domain protein; diguanylate cyclase/phosphodiesterase complement(474956..476878) Shewanella frigidimarina NCIMB 400 4278407 YP_749131.1 CDS Sfri_0431 NC_008345.1 476886 477536 R KEGG: son:SO4322 hypothetical protein; hypothetical protein complement(476886..477536) Shewanella frigidimarina NCIMB 400 4278408 YP_749132.1 CDS Sfri_0432 NC_008345.1 477619 478221 R PFAM: OmpA/MotB domain protein; KEGG: son:SO4321 OmpA family protein; OmpA/MotB domain-containing protein complement(477619..478221) Shewanella frigidimarina NCIMB 400 4278409 YP_749133.1 CDS Sfri_0433 NC_008345.1 478221 479630 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: son:SO4320 agglutination protein; type I secretion outer membrane protein, TolC family protein complement(478221..479630) Shewanella frigidimarina NCIMB 400 4278410 YP_749134.1 CDS Sfri_0434 NC_008345.1 479653 481035 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: son:SO4319 HlyD family secretion protein; type I secretion membrane fusion protein, HlyD family protein complement(479653..481035) Shewanella frigidimarina NCIMB 400 4278411 YP_749135.1 CDS Sfri_0435 NC_008345.1 481032 483209 R PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase; KEGG: son:SO4318 toxin secretion ATP-binding protein; ABC transporter complement(481032..483209) Shewanella frigidimarina NCIMB 400 4278412 YP_749136.1 CDS Sfri_0436 NC_008345.1 483293 500656 R TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor, type A; Cadherin; KEGG: pfo:Pfl_0133 von Willebrand factor, type A; outer membrane adhesin-like protein complement(483293..500656) Shewanella frigidimarina NCIMB 400 4278413 YP_749137.1 CDS Sfri_0437 NC_008345.1 501023 502192 R PFAM: HemY domain protein; KEGG: son:SO4316 HemY protein; HemY domain-containing protein complement(501023..502192) Shewanella frigidimarina NCIMB 400 4278414 YP_749138.1 CDS Sfri_0438 NC_008345.1 502189 503439 R PFAM: protein of unknown function DUF513, hemX; KEGG: son:SO4315 hemX protein; hypothetical protein complement(502189..503439) Shewanella frigidimarina NCIMB 400 4278415 YP_749139.1 CDS Sfri_0439 NC_008345.1 503525 504244 R PFAM: Uroporphyrinogen III synthase HEM4; KEGG: son:SO4314 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 complement(503525..504244) Shewanella frigidimarina NCIMB 400 4278137 YP_749140.1 CDS hemC NC_008345.1 504270 505199 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(504270..505199) Shewanella frigidimarina NCIMB 400 4278138 YP_749141.1 CDS cyaA NC_008345.1 505474 507933 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 505474..507933 Shewanella frigidimarina NCIMB 400 4278139 YP_749142.1 CDS Sfri_0442 NC_008345.1 508004 508339 R PFAM: Frataxin family protein; KEGG: son:SO4311 CyaY protein; frataxin family protein complement(508004..508339) Shewanella frigidimarina NCIMB 400 4278140 YP_749143.1 CDS Sfri_0443 NC_008345.1 508407 508601 D KEGG: son:SO4310 hypothetical protein; hypothetical protein 508407..508601 Shewanella frigidimarina NCIMB 400 4278141 YP_749144.1 CDS Sfri_0444 NC_008345.1 508622 509866 D TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: son:SO4309 diaminopimelate decarboxylase; diaminopimelate decarboxylase 508622..509866 Shewanella frigidimarina NCIMB 400 4278142 YP_749145.1 CDS dapF NC_008345.1 509907 510734 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 509907..510734 Shewanella frigidimarina NCIMB 400 4278143 YP_749146.1 CDS Sfri_0446 NC_008345.1 510731 511471 D PFAM: protein of unknown function DUF484; KEGG: son:SO4307 hypothetical protein; hypothetical protein 510731..511471 Shewanella frigidimarina NCIMB 400 4278144 YP_749147.1 CDS Sfri_0447 NC_008345.1 511565 512464 D TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO4306 integrase/recombinase XerC; tyrosine recombinase XerC 511565..512464 Shewanella frigidimarina NCIMB 400 4278145 YP_749148.1 CDS Sfri_0448 NC_008345.1 512464 513204 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO4305 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; HAD family hydrolase 512464..513204 Shewanella frigidimarina NCIMB 400 4278146 YP_749149.1 CDS Sfri_0449 NC_008345.1 513184 513699 R PFAM: AAA-4 family protein; KEGG: son:SO4303 hypothetical protein; putative transcriptional regulator complement(513184..513699) Shewanella frigidimarina NCIMB 400 4278147 YP_749150.1 CDS Sfri_0450 NC_008345.1 513820 514353 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: son:SO4302 hypothetical protein; hemerythrin HHE cation binding domain-containing protein complement(513820..514353) Shewanella frigidimarina NCIMB 400 4278148 YP_749151.1 CDS Sfri_0451 NC_008345.1 514448 515704 R PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: cps:CPS_3966 kelch motif domain protein; kelch repeat-containing protein complement(514448..515704) Shewanella frigidimarina NCIMB 400 4278149 YP_749152.1 CDS Sfri_0452 NC_008345.1 516325 519312 D PFAM: UvrD/REP helicase; DNA topoisomerase, type IA, zn finger domain protein; KEGG: cps:CPS_2454 helicase IV; UvrD/REP helicase 516325..519312 Shewanella frigidimarina NCIMB 400 4278150 YP_749153.1 CDS fis NC_008345.1 519454 519759 R Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis complement(519454..519759) Shewanella frigidimarina NCIMB 400 4278151 YP_749154.1 CDS Sfri_0454 NC_008345.1 519783 520745 R TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; dihydroorotate dehydrogenase; KEGG: son:SO0394 tRNA-dihydrouridine synthase B; putative TIM-barrel protein, nifR3 family protein complement(519783..520745) Shewanella frigidimarina NCIMB 400 4278152 YP_749155.1 CDS prmA NC_008345.1 521043 521924 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(521043..521924) Shewanella frigidimarina NCIMB 400 4278153 YP_749156.1 CDS Sfri_0456 NC_008345.1 522446 523189 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 522446..523189 Shewanella frigidimarina NCIMB 400 4278154 YP_749157.1 CDS Sfri_0457 NC_008345.1 523199 525199 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 523199..525199 Shewanella frigidimarina NCIMB 400 4277070 YP_749158.1 CDS frdB NC_008345.1 525201 525926 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 525201..525926 Shewanella frigidimarina NCIMB 400 4277071 YP_749159.1 CDS rho NC_008345.1 526763 528025 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(526763..528025) Shewanella frigidimarina NCIMB 400 4277072 YP_749160.1 CDS Sfri_0460 NC_008345.1 528248 528574 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0406 thioredoxin 1; thioredoxin complement(528248..528574) Shewanella frigidimarina NCIMB 400 4277073 YP_749161.1 CDS Sfri_0461 NC_008345.1 528728 530032 D enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 528728..530032 Shewanella frigidimarina NCIMB 400 4277074 YP_749162.1 CDS Sfri_0462 NC_008345.1 530036 530977 D PFAM: Ppx/GppA phosphatase; KEGG: son:SO0408 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase; Ppx/GppA phosphatase 530036..530977 Shewanella frigidimarina NCIMB 400 4277075 YP_749163.1 CDS Sfri_0463 NC_008345.1 531094 531696 R KEGG: son:SO0409 hypothetical protein; hypothetical protein complement(531094..531696) Shewanella frigidimarina NCIMB 400 4277076 YP_749164.1 CDS Sfri_0464 NC_008345.1 531846 532574 R PFAM: Integrase, catalytic region; KEGG: par:Psyc_0937 putative transposase OrfB; integrase catalytic subunit complement(531846..532574) Shewanella frigidimarina NCIMB 400 4277077 YP_749165.1 CDS Sfri_0465 NC_008345.1 532679 533074 R KEGG: dde:Dde_2987 transposase; transposase complement(532679..533074) Shewanella frigidimarina NCIMB 400 4277078 YP_749166.1 CDS Sfri_0466 NC_008345.1 533177 534190 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(533177..534190) Shewanella frigidimarina NCIMB 400 4277079 YP_749167.1 CDS Sfri_0467 NC_008345.1 534205 536130 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, transmembrane region; KEGG: son:SO4207 GGDEF domain protein; diguanylate cyclase complement(534205..536130) Shewanella frigidimarina NCIMB 400 4277080 YP_749168.1 CDS Sfri_0468 NC_008345.1 536130 536945 R PFAM: TatD-related deoxyribonuclease; KEGG: son:SO4206 hydrolase, TatD family; TatD-related deoxyribonuclease complement(536130..536945) Shewanella frigidimarina NCIMB 400 4277081 YP_749169.1 CDS Sfri_0469 NC_008345.1 536964 537500 R KEGG: son:SO4205 hypothetical protein; hypothetical protein complement(536964..537500) Shewanella frigidimarina NCIMB 400 4277082 YP_749170.1 CDS Sfri_0470 NC_008345.1 537546 538292 R TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: son:SO4204 Sec-independent periplasmic protein translocation protein TatC; Sec-independent protein translocase subunit TatC complement(537546..538292) Shewanella frigidimarina NCIMB 400 4277083 YP_749171.1 CDS Sfri_0471 NC_008345.1 538305 538709 R TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: son:SO4203 Sec-independent protein translocase protein TatB; twin-arginine translocation protein subunit TatB complement(538305..538709) Shewanella frigidimarina NCIMB 400 4277084 YP_749172.1 CDS Sfri_0472 NC_008345.1 538716 538961 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: son:SO4202 Sec-independent protein translocase protein TatA; twin arginine-targeting protein translocase complement(538716..538961) Shewanella frigidimarina NCIMB 400 4277085 YP_749173.1 CDS Sfri_0473 NC_008345.1 539071 540720 R TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: son:SO4201 ubiquinone biosynthesis protein AarF; 2-polyprenylphenol 6-hydroxylase complement(539071..540720) Shewanella frigidimarina NCIMB 400 4277086 YP_749174.1 CDS Sfri_0474 NC_008345.1 540717 541337 R PFAM: protein of unknown function DUF1243; KEGG: son:SO4200 conserved hypothetical protein; hypothetical protein complement(540717..541337) Shewanella frigidimarina NCIMB 400 4278538 YP_749175.1 CDS Sfri_0475 NC_008345.1 541337 542092 R TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4199 ubiquinone/menaquinone biosynthesis methlytransferase UbiE; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase LpxD complement(541337..542092) Shewanella frigidimarina NCIMB 400 4278539 YP_749176.1 CDS Sfri_0476 NC_008345.1 542349 543377 R PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: son:SO4198 arginase family protein; arginase/agmatinase/formiminoglutamase complement(542349..543377) Shewanella frigidimarina NCIMB 400 4278540 YP_749177.1 CDS Sfri_0477 NC_008345.1 543476 543961 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(543476..543961) Shewanella frigidimarina NCIMB 400 4278541 YP_749178.1 CDS Sfri_0478 NC_008345.1 544348 544596 D KEGG: son:SO4196 hypothetical protein; hypothetical protein 544348..544596 Shewanella frigidimarina NCIMB 400 4278542 YP_749179.1 CDS Sfri_0479 NC_008345.1 545053 545565 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO4195 PAP2 family protein; PA-phosphatase-like phosphoesterase 545053..545565 Shewanella frigidimarina NCIMB 400 4278543 YP_749180.1 CDS Sfri_0480 NC_008345.1 545723 546772 D TIGRFAM: conserved hypothetical protein; KEGG: son:SO4194 hypothetical protein; hypothetical protein 545723..546772 Shewanella frigidimarina NCIMB 400 4278544 YP_749181.1 CDS Sfri_0481 NC_008345.1 546845 547312 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(546845..547312) Shewanella frigidimarina NCIMB 400 4278545 YP_749182.1 CDS hemE NC_008345.1 547769 548833 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 547769..548833 Shewanella frigidimarina NCIMB 400 4278546 YP_749183.1 CDS Sfri_0483 NC_008345.1 549493 549789 D hypothetical protein 549493..549789 Shewanella frigidimarina NCIMB 400 4278547 YP_749184.1 CDS Sfri_0484 NC_008345.1 549967 551424 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cps:CPS_0650 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase complement(549967..551424) Shewanella frigidimarina NCIMB 400 4278548 YP_749185.1 CDS Sfri_0485 NC_008345.1 551424 552158 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sde:Sde_3703 response regulator receiver domain protein (CheY-like); two component transcriptional regulator, winged helix family protein complement(551424..552158) Shewanella frigidimarina NCIMB 400 4278549 YP_749186.1 CDS Sfri_0486 NC_008345.1 552269 552994 R KEGG: cps:CPS_0652 hypothetical protein; hypothetical protein complement(552269..552994) Shewanella frigidimarina NCIMB 400 4278550 YP_749187.1 CDS Sfri_0487 NC_008345.1 553006 553707 R KEGG: sde:Sde_3701 hypothetical protein; hypothetical protein complement(553006..553707) Shewanella frigidimarina NCIMB 400 4278551 YP_749188.1 CDS Sfri_0488 NC_008345.1 553850 554407 D KEGG: cps:CPS_4285 acetyltransferase, GNAT family; GNAT family acetyltransferase 553850..554407 Shewanella frigidimarina NCIMB 400 4278552 YP_749189.1 CDS Sfri_0489 NC_008345.1 554447 555787 D PFAM: FAD dependent oxidoreductase; KEGG: cps:CPS_1461 putative oxidoreductase; FAD dependent oxidoreductase 554447..555787 Shewanella frigidimarina NCIMB 400 4278553 YP_749190.1 CDS Sfri_0490 NC_008345.1 555821 557320 R PFAM: Na+/H+ antiporter NhaC; KEGG: pha:PSHAa1677 Na+/H+ antiporter NnaC; Na+/H+ antiporter NhaC complement(555821..557320) Shewanella frigidimarina NCIMB 400 4278554 YP_749191.1 CDS Sfri_0491 NC_008345.1 557680 557898 R KEGG: son:SO0439 hypothetical protein; hypothetical protein complement(557680..557898) Shewanella frigidimarina NCIMB 400 4278555 YP_749192.1 CDS Sfri_0492 NC_008345.1 558155 559456 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(558155..559456) Shewanella frigidimarina NCIMB 400 4278573 YP_749193.1 CDS purH NC_008345.1 559676 561265 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(559676..561265) Shewanella frigidimarina NCIMB 400 4278574 YP_749194.1 CDS zntR NC_008345.1 561573 562034 D mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 561573..562034 Shewanella frigidimarina NCIMB 400 4278575 YP_749195.1 CDS Sfri_0495 NC_008345.1 562037 563569 D PFAM: permease; KEGG: son:SO0444 hypothetical protein; permease 562037..563569 Shewanella frigidimarina NCIMB 400 4278576 YP_749196.1 CDS Sfri_0497 NC_008345.1 564100 564222 R hypothetical protein complement(564100..564222) Shewanella frigidimarina NCIMB 400 4278577 YP_749197.1 CDS Sfri_0498 NC_008345.1 564496 565434 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0523 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(564496..565434) Shewanella frigidimarina NCIMB 400 4278578 YP_749198.1 CDS Sfri_0499 NC_008345.1 565531 566625 D PFAM: secretion protein HlyD family protein; KEGG: son:SO0524 HlyD family secretion protein; secretion protein HlyD family protein 565531..566625 Shewanella frigidimarina NCIMB 400 4278579 YP_749199.1 CDS Sfri_0500 NC_008345.1 566627 568258 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0525 drug resistance transporter, EmrB/QacA family protein; EmrB/QacA family drug resistance transporter 566627..568258 Shewanella frigidimarina NCIMB 400 4278580 YP_749200.1 CDS Sfri_0501 NC_008345.1 568305 568769 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0526 acetyltransferase, GNAT family; N-acetyltransferase GCN5 568305..568769 Shewanella frigidimarina NCIMB 400 4278581 YP_749201.1 CDS Sfri_0502 NC_008345.1 568866 569183 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0527 hypothetical protein; antibiotic biosynthesis monooxygenase 568866..569183 Shewanella frigidimarina NCIMB 400 4278582 YP_749202.1 CDS Sfri_0503 NC_008345.1 569378 570421 R PFAM: porin, Gram-negative type; KEGG: son:SO3896 outer membrane porin, putative; porin complement(569378..570421) Shewanella frigidimarina NCIMB 400 4278583 YP_749203.1 CDS Sfri_0504 NC_008345.1 571212 572015 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: son:SO3895 HesA/MoeB/ThiF family protein; UBA/THIF-type NAD/FAD binding protein 571212..572015 Shewanella frigidimarina NCIMB 400 4278584 YP_749204.1 CDS Sfri_0505 NC_008345.1 572026 573618 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3894 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase complement(572026..573618) Shewanella frigidimarina NCIMB 400 4278585 YP_749205.1 CDS Sfri_0506 NC_008345.1 573849 574460 D KEGG: son:SO3892 hypothetical protein; hypothetical protein 573849..574460 Shewanella frigidimarina NCIMB 400 4278586 YP_749206.1 CDS Sfri_0507 NC_008345.1 574647 574778 R KEGG: ppr:PBPRA2831 conserved hypothetical protein; hypothetical protein complement(574647..574778) Shewanella frigidimarina NCIMB 400 4278587 YP_749207.1 CDS Sfri_0508 NC_008345.1 575637 577280 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; 4-vinyl reductase, 4VR; SMART: AAA ATPase; KEGG: gme:Gmet_2116 transcriptional regulator, fis family; sigma54 specific transcriptional regulator, Fis family protein complement(575637..577280) Shewanella frigidimarina NCIMB 400 4278588 YP_749208.1 CDS Sfri_0509 NC_008345.1 577479 577835 R KEGG: son:SO3056 tetraheme cytochrome c; tetraheme cytochrome c complement(577479..577835) Shewanella frigidimarina NCIMB 400 4278589 YP_749209.1 CDS Sfri_0510 NC_008345.1 577874 579076 R KEGG: ilo:IL2008 secreted protein of porin family; secreted porin family protein complement(577874..579076) Shewanella frigidimarina NCIMB 400 4278643 YP_749210.1 CDS Sfri_0511 NC_008345.1 579146 580678 R KEGG: dsy:DSY2606 putative fumarate reductase flavoprotein subunit; TIGRFAM: Twin-arginine translocation pathway signal; flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; flavocytochrome c complement(579146..580678) Shewanella frigidimarina NCIMB 400 4278644 YP_749211.1 CDS Sfri_0512 NC_008345.1 581602 582300 D hypothetical protein 581602..582300 Shewanella frigidimarina NCIMB 400 4278645 YP_749212.1 CDS Sfri_0513 NC_008345.1 582403 586041 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO3800 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin complement(582403..586041) Shewanella frigidimarina NCIMB 400 4278646 YP_749213.1 CDS Sfri_0514 NC_008345.1 586334 586795 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(586334..586795) Shewanella frigidimarina NCIMB 400 4278647 YP_749214.1 CDS Sfri_0515 NC_008345.1 586896 587573 R PFAM: pseudouridine synthase; KEGG: hch:HCH_04661 pseudouridylate synthases, 23S RNA-specific; pseudouridylate synthase complement(586896..587573) Shewanella frigidimarina NCIMB 400 4278648 YP_749215.1 CDS Sfri_0516 NC_008345.1 587668 587958 R KEGG: son:SO0973 hypothetical protein; hypothetical protein complement(587668..587958) Shewanella frigidimarina NCIMB 400 4278649 YP_749216.1 CDS Sfri_0517 NC_008345.1 587991 588410 R KEGG: son:SO0971 hypothetical protein; hypothetical protein complement(587991..588410) Shewanella frigidimarina NCIMB 400 4278650 YP_749217.1 CDS Sfri_0518 NC_008345.1 588987 589976 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO0968 D-lactate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 588987..589976 Shewanella frigidimarina NCIMB 400 4278651 YP_749218.1 CDS Sfri_0519 NC_008345.1 590077 590814 D PFAM: dienelactone hydrolase; KEGG: pha:PSHAa2188 hydrolase; dienelactone hydrolase 590077..590814 Shewanella frigidimarina NCIMB 400 4278652 YP_749219.1 CDS Sfri_0520 NC_008345.1 590884 591423 R KEGG: son:SO0961 hypothetical protein; hypothetical protein complement(590884..591423) Shewanella frigidimarina NCIMB 400 4278653 YP_749220.1 CDS Sfri_0521 NC_008345.1 591575 592318 D KEGG: son:SO0960 hypothetical spermidine synthase; putative spermidine synthase 591575..592318 Shewanella frigidimarina NCIMB 400 4278654 YP_749221.1 CDS Sfri_0522 NC_008345.1 592539 593108 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO0958 alkyl hydroperoxide reductase, C subunit; alkyl hydroperoxide reductase 592539..593108 Shewanella frigidimarina NCIMB 400 4278655 YP_749222.1 CDS Sfri_0523 NC_008345.1 593221 594786 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0956 alkyl hydroperoxide reductase, F subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 593221..594786 Shewanella frigidimarina NCIMB 400 4278656 YP_749223.1 CDS Sfri_0524 NC_008345.1 595234 596853 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: hch:HCH_06069 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 595234..596853 Shewanella frigidimarina NCIMB 400 4278657 YP_749224.1 CDS Sfri_0525 NC_008345.1 597251 600922 D KEGG: son:SO4008 hypothetical protein; hypothetical protein 597251..600922 Shewanella frigidimarina NCIMB 400 4278658 YP_749225.1 CDS Sfri_0526 NC_008345.1 600922 601575 D KEGG: son:SO4007 hypothetical protein; hypothetical protein 600922..601575 Shewanella frigidimarina NCIMB 400 4278659 YP_749226.1 CDS Sfri_0527 NC_008345.1 601572 602792 D KEGG: son:SO4006 hypothetical protein; hypothetical protein 601572..602792 Shewanella frigidimarina NCIMB 400 4278660 YP_749227.1 CDS Sfri_0528 NC_008345.1 602780 603784 D KEGG: son:SO4005 hypothetical protein; hypothetical protein 602780..603784 Shewanella frigidimarina NCIMB 400 4276948 YP_749228.1 CDS Sfri_0529 NC_008345.1 604347 605468 D PFAM: sodium:dicarboxylate symporter; KEGG: son:SO4004 proton/glutamate symporter, putative; sodium:dicarboxylate symporter 604347..605468 Shewanella frigidimarina NCIMB 400 4276949 YP_749229.1 CDS Sfri_0530 NC_008345.1 605615 606826 R hypothetical protein complement(605615..606826) Shewanella frigidimarina NCIMB 400 4276950 YP_749230.1 CDS Sfri_0531 NC_008345.1 607034 608026 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(607034..608026) Shewanella frigidimarina NCIMB 400 4276951 YP_749231.1 CDS Sfri_0532 NC_008345.1 608202 610505 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: son:SO3990 dipeptidyl peptidase IV; peptidase S9B dipeptidylpeptidase IV subunit 608202..610505 Shewanella frigidimarina NCIMB 400 4276952 YP_749232.1 CDS Sfri_0533 NC_008345.1 610595 611311 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO3988 aerobic respiration control protein ArcA; two-component response regulator complement(610595..611311) Shewanella frigidimarina NCIMB 400 4276953 YP_749233.1 CDS Sfri_0534 NC_008345.1 611977 612420 D KEGG: son:SO3987 hypothetical protein; hypothetical protein 611977..612420 Shewanella frigidimarina NCIMB 400 4276954 YP_749234.1 CDS Sfri_0535 NC_008345.1 613005 614384 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 613005..614384 Shewanella frigidimarina NCIMB 400 4276955 YP_749235.1 CDS Sfri_0536 NC_008345.1 614754 615872 D PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO3985 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 614754..615872 Shewanella frigidimarina NCIMB 400 4276956 YP_749236.1 CDS Sfri_0537 NC_008345.1 615944 617080 R PFAM: peptidase M50; KEGG: son:SO0823 hypothetical protein; peptidase M50 complement(615944..617080) Shewanella frigidimarina NCIMB 400 4276957 YP_749237.1 CDS Sfri_0538 NC_008345.1 617296 617658 R KEGG: son:SO0824 hypothetical protein; hypothetical protein complement(617296..617658) Shewanella frigidimarina NCIMB 400 4276958 YP_749238.1 CDS Sfri_0539 NC_008345.1 617703 619370 R PFAM: protein of unknown function DUF342; KEGG: son:SO0826 hypothetical protein; hypothetical protein complement(617703..619370) Shewanella frigidimarina NCIMB 400 4276959 YP_749239.1 CDS Sfri_0540 NC_008345.1 619548 620585 R PFAM: methyltransferase small; Methyltransferase small, N-terminal domain protein; KEGG: son:SO0828 ribosomal RNA small subunit methyltransferase C; rRNA (guanine-N(2)-)-methyltransferase complement(619548..620585) Shewanella frigidimarina NCIMB 400 4276960 YP_749240.1 CDS Sfri_0541 NC_008345.1 620690 622057 R PFAM: Alkaline phosphatase; KEGG: son:SO0830 alkaline phosphatase; alkaline phosphatase complement(620690..622057) Shewanella frigidimarina NCIMB 400 4276961 YP_749241.1 CDS Sfri_0542 NC_008345.1 622066 623019 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(622066..623019) Shewanella frigidimarina NCIMB 400 4276962 YP_749242.1 CDS Sfri_0543 NC_008345.1 623058 623798 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(623058..623798) Shewanella frigidimarina NCIMB 400 4276963 YP_749243.1 CDS Sfri_0544 NC_008345.1 623849 624613 R PFAM: Endonuclease I; KEGG: son:SO0833 endonuclease I; deoxyribonuclease I complement(623849..624613) Shewanella frigidimarina NCIMB 400 4276964 YP_749244.1 CDS Sfri_0545 NC_008345.1 624707 625318 R PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: son:SO0834 sprT protein, putative; hypothetical protein complement(624707..625318) Shewanella frigidimarina NCIMB 400 4278713 YP_749245.1 CDS Sfri_0546 NC_008345.1 625401 626585 R KEGG: son:SO0835 hypothetical protein; hypothetical protein complement(625401..626585) Shewanella frigidimarina NCIMB 400 4278714 YP_749246.1 CDS Sfri_0547 NC_008345.1 626923 627834 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0839 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(626923..627834) Shewanella frigidimarina NCIMB 400 4278715 YP_749247.1 CDS Sfri_0548 NC_008345.1 627964 632517 D PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase; carbamoyl-phosphate synthase subunit L 627964..632517 Shewanella frigidimarina NCIMB 400 4278716 YP_749248.1 CDS Sfri_0549 NC_008345.1 632671 634137 D KEGG: son:SO0841 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3; diguanylate cyclase 632671..634137 Shewanella frigidimarina NCIMB 400 4278717 YP_749249.1 CDS Sfri_0550 NC_008345.1 634530 636623 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 634530..636623 Shewanella frigidimarina NCIMB 400 4278718 YP_749250.1 CDS Sfri_0551 NC_008345.1 636730 637614 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0843 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(636730..637614) Shewanella frigidimarina NCIMB 400 4278719 YP_749251.1 CDS Sfri_0552 NC_008345.1 638003 638434 R KEGG: son:SO0845 cytochrome c-type protein NapB; cytochrome c-type protein NapB complement(638003..638434) Shewanella frigidimarina NCIMB 400 4278720 YP_749252.1 CDS Sfri_0553 NC_008345.1 638536 641019 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(638536..641019) Shewanella frigidimarina NCIMB 400 4278721 YP_749253.1 CDS Sfri_0554 NC_008345.1 641432 642619 R KEGG: son:SO0855 hypothetical protein; hypothetical protein complement(641432..642619) Shewanella frigidimarina NCIMB 400 4278722 YP_749254.1 CDS Sfri_0555 NC_008345.1 642616 645213 R PFAM: protein of unknown function DUF214; KEGG: son:SO0856 putative ABC transport system permease protein; hypothetical protein complement(642616..645213) Shewanella frigidimarina NCIMB 400 4278723 YP_749255.1 CDS Sfri_0556 NC_008345.1 645218 645922 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0857 ABC transporter, ATP-binding protein; ABC transporter complement(645218..645922) Shewanella frigidimarina NCIMB 400 4278724 YP_749256.1 CDS Sfri_0557 NC_008345.1 646068 647030 R PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: son:SO0861 hypothetical protein; glycine cleavage T protein (aminomethyl transferase) complement(646068..647030) Shewanella frigidimarina NCIMB 400 4278725 YP_749257.1 CDS Sfri_0558 NC_008345.1 647203 648432 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(647203..648432) Shewanella frigidimarina NCIMB 400 4278726 YP_749258.1 CDS Sfri_0559 NC_008345.1 648625 649248 D KEGG: son:SO0863 hypothetical protein; hypothetical protein 648625..649248 Shewanella frigidimarina NCIMB 400 4278727 YP_749259.1 CDS Sfri_0560 NC_008345.1 649717 650385 D PFAM: regulatory protein, LuxR; KEGG: son:SO0864 transcriptional regulator, LuxR family; transcriptional regulator, LuxR family protein 649717..650385 Shewanella frigidimarina NCIMB 400 4278728 YP_749260.1 CDS Sfri_0561 NC_008345.1 650531 650968 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO1068 hypothetical protein; hypothetical protein 650531..650968 Shewanella frigidimarina NCIMB 400 4278729 YP_749261.1 CDS Sfri_0562 NC_008345.1 651194 651436 D KEGG: son:SO1069 hypothetical protein; hypothetical protein 651194..651436 Shewanella frigidimarina NCIMB 400 4278730 YP_749262.1 CDS Sfri_0563 NC_008345.1 651700 653160 D PFAM: Catalase domain protein; KEGG: son:SO1070 catalase; catalase 651700..653160 Shewanella frigidimarina NCIMB 400 4278504 YP_749263.1 CDS Sfri_0564 NC_008345.1 653315 654799 R PFAM: adenylate cyclase; KEGG: son:SO3769 hypothetical protein; adenylate cyclase complement(653315..654799) Shewanella frigidimarina NCIMB 400 4278505 YP_749264.1 CDS Sfri_0565 NC_008345.1 655036 655716 D PFAM: protein of unknown function DUF47; KEGG: son:SO3770 conserved hypothetical protein TIGR00153; hypothetical protein 655036..655716 Shewanella frigidimarina NCIMB 400 4278506 YP_749265.1 CDS Sfri_0566 NC_008345.1 655742 657010 D PFAM: phosphate transporter; KEGG: son:SO3771 phosphate transporter, putative; phosphate transporter 655742..657010 Shewanella frigidimarina NCIMB 400 4278507 YP_749266.1 CDS Sfri_0567 NC_008345.1 657151 657732 D PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: son:SO3772 SH3 domain protein; SH3 type 3 domain-containing protein 657151..657732 Shewanella frigidimarina NCIMB 400 4278508 YP_749267.1 CDS Sfri_0568 NC_008345.1 658135 661329 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 658135..661329 Shewanella frigidimarina NCIMB 400 4278509 YP_749268.1 CDS Sfri_0569 NC_008345.1 661394 661678 R KEGG: vpa:VPA0120 hypothetical protein; hypothetical protein complement(661394..661678) Shewanella frigidimarina NCIMB 400 4278510 YP_749269.1 CDS Sfri_0570 NC_008345.1 662046 663389 D PFAM: Na+/H+ antiporter NhaC; KEGG: son:SO1087 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC 662046..663389 Shewanella frigidimarina NCIMB 400 4278511 YP_749270.1 CDS Sfri_0571 NC_008345.1 663678 664322 D KEGG: son:SO1086 hypothetical protein; hypothetical protein 663678..664322 Shewanella frigidimarina NCIMB 400 4278512 YP_749271.1 CDS Sfri_0572 NC_008345.1 664353 665069 D TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pha:PSHAa0085 ribosomal RNA pseudouridylate synthase; pseudouridine synthase, Rsu 664353..665069 Shewanella frigidimarina NCIMB 400 4278513 YP_749272.1 CDS Sfri_0573 NC_008345.1 665073 667229 R KEGG: son:SO1075 hypothetical protein; hypothetical protein complement(665073..667229) Shewanella frigidimarina NCIMB 400 4278514 YP_749273.1 CDS Sfri_0574 NC_008345.1 667445 668647 R PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: son:SO1074 tyrosine-specific transport protein, putative; aromatic amino acid permease complement(667445..668647) Shewanella frigidimarina NCIMB 400 4278515 YP_749274.1 CDS Sfri_0575 NC_008345.1 669112 669666 D PFAM: protein of unknown function UPF0016; KEGG: son:SO1071 hypothetical protein; hypothetical protein 669112..669666 Shewanella frigidimarina NCIMB 400 4278516 YP_749275.1 CDS Sfri_0576 NC_008345.1 669871 670251 D KEGG: pha:PSHAb0212 hypothetical protein; hypothetical protein 669871..670251 Shewanella frigidimarina NCIMB 400 4278517 YP_749276.1 CDS Sfri_0577 NC_008345.1 670352 670546 R KEGG: son:SO0974 hypothetical protein; hypothetical protein complement(670352..670546) Shewanella frigidimarina NCIMB 400 4278518 YP_749277.1 CDS Sfri_0578 NC_008345.1 670709 671200 D PFAM: regulatory protein, MarR; KEGG: son:SO0977 transcriptional regulator, MarR family; transcriptional regulator, MarR family protein 670709..671200 Shewanella frigidimarina NCIMB 400 4278519 YP_749278.1 CDS rumB NC_008345.1 671190 672323 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 671190..672323 Shewanella frigidimarina NCIMB 400 4278520 YP_749279.1 CDS Sfri_0580 NC_008345.1 672503 673654 D TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: son:SO0986 chromate transporter, putative; chromate transporter, chromate ion transporter (CHR) family protein 672503..673654 Shewanella frigidimarina NCIMB 400 4278749 YP_749280.1 CDS Sfri_0581 NC_008345.1 673789 675453 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: son:SO0987 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 673789..675453 Shewanella frigidimarina NCIMB 400 4278750 YP_749281.1 CDS Sfri_0582 NC_008345.1 676080 677042 D TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: cps:CPS_4083 peptide chain release factor 2, programmed frameshift; peptide chain release factor 2 676080..677042 Shewanella frigidimarina NCIMB 400 4278751 YP_749282.1 CDS lysS NC_008345.1 677097 678599 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 677097..678599 Shewanella frigidimarina NCIMB 400 4278752 YP_749283.1 CDS Sfri_0584 NC_008345.1 678722 679150 R PFAM: thioesterase superfamily protein; KEGG: vpa:VPA0775 hypothetical protein; thioesterase superfamily protein complement(678722..679150) Shewanella frigidimarina NCIMB 400 4278753 YP_749284.1 CDS Sfri_0585 NC_008345.1 679193 680902 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: vch:VCA0644 NADH oxidase, putative; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(679193..680902) Shewanella frigidimarina NCIMB 400 4278754 YP_749285.1 CDS Sfri_0586 NC_008345.1 680946 681386 R PFAM: ferric-uptake regulator; KEGG: aci:ACIAD0910 negative regulator of ferric iron uptake; Fur family ferric uptake regulator complement(680946..681386) Shewanella frigidimarina NCIMB 400 4278755 YP_749286.1 CDS Sfri_0587 NC_008345.1 681432 681713 R PFAM: protein of unknown function DUF134; KEGG: ppr:PBPRB1238 putative DNA-binding protein; hypothetical protein complement(681432..681713) Shewanella frigidimarina NCIMB 400 4278756 YP_749287.1 CDS Sfri_0588 NC_008345.1 682064 683005 R SMART: WD-40 repeat protein; KEGG: cps:CPS_0436 hypothetical protein; WD-40 repeat-containing protein complement(682064..683005) Shewanella frigidimarina NCIMB 400 4278757 YP_749288.1 CDS Sfri_0589 NC_008345.1 683288 684325 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 683288..684325 Shewanella frigidimarina NCIMB 400 4278758 YP_749289.1 CDS Sfri_0590 NC_008345.1 684488 687922 R KEGG: cps:CPS_1933 sensory box/GGDEF/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(684488..687922) Shewanella frigidimarina NCIMB 400 4278759 YP_749290.1 CDS Sfri_0591 NC_008345.1 688460 688972 D KEGG: son:SO4593 hypothetical protein; hypothetical protein 688460..688972 Shewanella frigidimarina NCIMB 400 4278760 YP_749291.1 CDS Sfri_0592 NC_008345.1 689813 691402 D PFAM: peptidase S41; KEGG: pha:PSHAa0289 hypothetical protein; peptidase S41 689813..691402 Shewanella frigidimarina NCIMB 400 4278761 YP_749292.1 CDS Sfri_0593 NC_008345.1 691402 691794 D KEGG: pha:PSHAa0288 hypothetical protein; hypothetical protein 691402..691794 Shewanella frigidimarina NCIMB 400 4278762 YP_749293.1 CDS Sfri_0594 NC_008345.1 692154 693593 R PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_04311 outer membrane protein and related peptidoglycan-associated (LipO)protein; OmpA/MotB domain-containing protein complement(692154..693593) Shewanella frigidimarina NCIMB 400 4278763 YP_749294.1 CDS Sfri_0596 NC_008345.1 694584 695222 D PFAM: protein of unknown function UPF0126; KEGG: son:SO3342 hypothetical protein; hypothetical protein 694584..695222 Shewanella frigidimarina NCIMB 400 4278764 YP_749295.1 CDS Sfri_0597 NC_008345.1 695198 696073 D hypothetical protein 695198..696073 Shewanella frigidimarina NCIMB 400 4278765 YP_749296.1 CDS Sfri_0598 NC_008345.1 696159 696665 D hypothetical protein 696159..696665 Shewanella frigidimarina NCIMB 400 4278766 YP_749297.1 CDS Sfri_0599 NC_008345.1 696822 698060 D hypothetical protein 696822..698060 Shewanella frigidimarina NCIMB 400 4278521 YP_749298.1 CDS Sfri_0600 NC_008345.1 698123 698731 D hypothetical protein 698123..698731 Shewanella frigidimarina NCIMB 400 4278522 YP_749299.1 CDS Sfri_0601 NC_008345.1 699056 700873 R KEGG: ilo:IL0291 hypothetical protein; hypothetical protein complement(699056..700873) Shewanella frigidimarina NCIMB 400 4278523 YP_749300.1 CDS Sfri_0602 NC_008345.1 701022 701654 R PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: vpa:VPA1447 putative transcriptional regulator, LuxR family; transcriptional regulator, LuxR family protein complement(701022..701654) Shewanella frigidimarina NCIMB 400 4278524 YP_749301.1 CDS Sfri_0603 NC_008345.1 701982 702863 R catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F complement(701982..702863) Shewanella frigidimarina NCIMB 400 4278525 YP_749302.1 CDS Sfri_0604 NC_008345.1 703004 703909 R PFAM: protein of unknown function DUF72; KEGG: ppr:PBPRA1111 hypothetical protein; hypothetical protein complement(703004..703909) Shewanella frigidimarina NCIMB 400 4278526 YP_749303.1 CDS Sfri_0605 NC_008345.1 704130 707177 D KEGG: pfo:Pfl_4564 hypothetical protein; hypothetical protein 704130..707177 Shewanella frigidimarina NCIMB 400 4278527 YP_749304.1 CDS Sfri_0606 NC_008345.1 707260 707700 R KEGG: ilo:IL0121 hypothetical protein; hypothetical protein complement(707260..707700) Shewanella frigidimarina NCIMB 400 4278528 YP_749305.1 CDS Sfri_0607 NC_008345.1 707974 708498 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1049 acetyltransferase, GNAT family; N-acetyltransferase GCN5 707974..708498 Shewanella frigidimarina NCIMB 400 4278529 YP_749306.1 CDS Sfri_0608 NC_008345.1 708988 710253 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO3388 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 708988..710253 Shewanella frigidimarina NCIMB 400 4278530 YP_749307.1 CDS Sfri_0609 NC_008345.1 710427 712487 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF839; KEGG: son:SO2385 hypothetical protein; twin-arginine translocation pathway signal 710427..712487 Shewanella frigidimarina NCIMB 400 4278531 YP_749308.1 CDS Sfri_0610 NC_008345.1 712641 713027 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vch:VCA0890 glyoxylase I family protein; glyoxalase/bleomycin resistance protein/dioxygenase 712641..713027 Shewanella frigidimarina NCIMB 400 4278532 YP_749309.1 CDS Sfri_0611 NC_008345.1 713278 715599 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpa:RPA3480 putative outer membrane receptor for iron transport; TonB-dependent receptor 713278..715599 Shewanella frigidimarina NCIMB 400 4278533 YP_749310.1 CDS Sfri_0612 NC_008345.1 715614 716294 D PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: aci:ACIAD0531 putative hydroxylase; 2OG-Fe(II) oxygenase 715614..716294 Shewanella frigidimarina NCIMB 400 4278534 YP_749311.1 CDS Sfri_0613 NC_008345.1 716455 717396 R PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4568 formate-dependent nitrite reductase, nrfD protein; polysulfide reductase NrfD complement(716455..717396) Shewanella frigidimarina NCIMB 400 4278535 YP_749312.1 CDS Sfri_0614 NC_008345.1 717393 718079 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: vfi:VF1552 thiosulfate reductase electron transport subunit; twin-arginine translocation pathway signal complement(717393..718079) Shewanella frigidimarina NCIMB 400 4278536 YP_749313.1 CDS Sfri_0615 NC_008345.1 718086 718550 R KEGG: eca:ECA1876 cytochrome C-type protein; hypothetical protein complement(718086..718550) Shewanella frigidimarina NCIMB 400 4278537 YP_749314.1 CDS Sfri_0616 NC_008345.1 718626 719090 R hypothetical protein complement(718626..719090) Shewanella frigidimarina NCIMB 400 4278416 YP_749315.1 CDS Sfri_0617 NC_008345.1 719609 720568 D PFAM: regulatory protein, LysR; KEGG: son:SO4571 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 719609..720568 Shewanella frigidimarina NCIMB 400 4278417 YP_749316.1 CDS Sfri_0618 NC_008345.1 721380 722360 R PFAM: Mg2 transporter protein, CorA family protein; KEGG: son:SO3984 magnesium transporter, putative; Mg2 transporter protein, CorA family protein complement(721380..722360) Shewanella frigidimarina NCIMB 400 4278418 YP_749317.1 CDS Sfri_0619 NC_008345.1 722546 722917 D PFAM: Uncharacterised conserved protein UCP006287; KEGG: son:SO3983 hypothetical protein; hypothetical protein 722546..722917 Shewanella frigidimarina NCIMB 400 4278419 YP_749318.1 CDS Sfri_0620 NC_008345.1 723008 723637 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: son:SO3982 DNA-binding nitrate/nitrite response regulator; two component transcriptional regulator, LuxR family protein complement(723008..723637) Shewanella frigidimarina NCIMB 400 4278420 YP_749319.1 CDS Sfri_0621 NC_008345.1 723630 725345 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: son:SO3981 nitrate/nitrite sensor protein NarQ; nitrate/nitrite sensor protein NarQ complement(723630..725345) Shewanella frigidimarina NCIMB 400 4278421 YP_749320.1 CDS nrfA NC_008345.1 725629 727020 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 725629..727020 Shewanella frigidimarina NCIMB 400 4278422 YP_749321.1 CDS Sfri_0623 NC_008345.1 727357 727695 D PFAM: nitrogen regulatory protein P-II; KEGG: son:SO0761 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II 727357..727695 Shewanella frigidimarina NCIMB 400 4278423 YP_749322.1 CDS Sfri_0624 NC_008345.1 727706 728956 D PFAM: Rh family protein/ammonium transporter; KEGG: son:SO0760 ammonium transporter; Rh family protein/ammonium transporter 727706..728956 Shewanella frigidimarina NCIMB 400 4278424 YP_749323.1 CDS Sfri_0625 NC_008345.1 729144 729437 D KEGG: son:SO0758 hypothetical protein; hypothetical protein 729144..729437 Shewanella frigidimarina NCIMB 400 4278425 YP_749324.1 CDS Sfri_0626 NC_008345.1 729535 730755 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0757 TPR domain protein; TPR repeat-containing protein 729535..730755 Shewanella frigidimarina NCIMB 400 4278426 YP_749325.1 CDS Sfri_0627 NC_008345.1 730761 731603 R KEGG: mag:amb0186 ABC-type amino acid transport/signal transduction systems; ABC-type amino acid transport/signal transduction systems complement(730761..731603) Shewanella frigidimarina NCIMB 400 4278427 YP_749326.1 CDS Sfri_0628 NC_008345.1 732034 733089 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 732034..733089 Shewanella frigidimarina NCIMB 400 4278428 YP_749327.1 CDS Sfri_0629 NC_008345.1 733134 733310 R KEGG: son:SO0755 hypothetical protein; hypothetical protein complement(733134..733310) Shewanella frigidimarina NCIMB 400 4278429 YP_749328.1 CDS Sfri_0630 NC_008345.1 733662 735455 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0754 ABC transporter, ATP-binding protein; ABC transporter 733662..735455 Shewanella frigidimarina NCIMB 400 4278430 YP_749329.1 CDS Sfri_0631 NC_008345.1 735739 735957 D KEGG: son:SO0753 hypothetical protein; hypothetical protein 735739..735957 Shewanella frigidimarina NCIMB 400 4278431 YP_749330.1 CDS Sfri_0632 NC_008345.1 736192 736383 R KEGG: son:SO0752 hypothetical protein; hypothetical protein complement(736192..736383) Shewanella frigidimarina NCIMB 400 4278432 YP_749331.1 CDS Sfri_0633 NC_008345.1 736532 738019 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: son:SO0750 glutamate synthase, putative; ferredoxin-dependent glutamate synthase complement(736532..738019) Shewanella frigidimarina NCIMB 400 4278433 YP_749332.1 CDS Sfri_0634 NC_008345.1 738226 738843 D KEGG: son:SO0748 hypothetical protein; hypothetical protein 738226..738843 Shewanella frigidimarina NCIMB 400 4278590 YP_749333.1 CDS Sfri_0635 NC_008345.1 738987 739736 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO0747 ferredoxin--NADP reductase; oxidoreductase FAD/NAD(P)-binding subunit 738987..739736 Shewanella frigidimarina NCIMB 400 4278591 YP_749334.1 CDS Sfri_0636 NC_008345.1 739953 740960 D PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO0744 iron(III) ABC transporter, periplasmic iron(III)-binding protein; extracellular solute-binding protein 739953..740960 Shewanella frigidimarina NCIMB 400 4278592 YP_749335.1 CDS Sfri_0637 NC_008345.1 741047 742678 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO0743 iron(III) ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 741047..742678 Shewanella frigidimarina NCIMB 400 4278593 YP_749336.1 CDS Sfri_0638 NC_008345.1 742681 743712 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: son:SO0742 iron(III) ABC transporter, ATP-binding protein; ABC transporter 742681..743712 Shewanella frigidimarina NCIMB 400 4278594 YP_749337.1 CDS Sfri_0639 NC_008345.1 744074 745012 D TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: son:SO0740 melanin biosynthesis protein TyrA, putative; Dyp-type peroxidase family protein 744074..745012 Shewanella frigidimarina NCIMB 400 4278595 YP_749338.1 CDS Sfri_0640 NC_008345.1 745075 745545 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(745075..745545) Shewanella frigidimarina NCIMB 400 4278596 YP_749339.1 CDS Sfri_0641 NC_008345.1 745712 746137 R PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: son:SO0923 hypothetical protein; hypothetical protein complement(745712..746137) Shewanella frigidimarina NCIMB 400 4278597 YP_749340.1 CDS Sfri_0642 NC_008345.1 746260 746478 D KEGG: son:SO0924 hypothetical protein; hypothetical protein 746260..746478 Shewanella frigidimarina NCIMB 400 4278598 YP_749341.1 CDS Sfri_0643 NC_008345.1 746482 747030 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0926 acetyltransferase, GNAT family; N-acetyltransferase GCN5 746482..747030 Shewanella frigidimarina NCIMB 400 4278599 YP_749342.1 CDS Sfri_0644 NC_008345.1 747077 747433 D KEGG: son:SO0927 hypothetical protein; hypothetical protein 747077..747433 Shewanella frigidimarina NCIMB 400 4278600 YP_749343.1 CDS Sfri_0645 NC_008345.1 747584 748174 R PFAM: GCN5-related N-acetyltransferase; KEGG: vch:VC0317 hypothetical protein; N-acetyltransferase GCN5 complement(747584..748174) Shewanella frigidimarina NCIMB 400 4278601 YP_749344.1 CDS Sfri_0646 NC_008345.1 748322 749473 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(748322..749473) Shewanella frigidimarina NCIMB 400 4278602 YP_749345.1 CDS Sfri_0647 NC_008345.1 749965 752007 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 749965..752007 Shewanella frigidimarina NCIMB 400 4278603 YP_749346.1 CDS Sfri_0648 NC_008345.1 752197 753216 D NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 752197..753216 Shewanella frigidimarina NCIMB 400 4278604 YP_749347.1 CDS pgk NC_008345.1 753293 754468 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 753293..754468 Shewanella frigidimarina NCIMB 400 4278605 YP_749348.1 CDS Sfri_0650 NC_008345.1 754624 755688 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 754624..755688 Shewanella frigidimarina NCIMB 400 4278606 YP_749349.1 CDS Sfri_0651 NC_008345.1 755881 757221 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: plu:plu0798 hypothetical protein; MATE efflux family protein 755881..757221 Shewanella frigidimarina NCIMB 400 4278172 YP_749350.1 CDS Sfri_0652 NC_008345.1 757337 758077 D PFAM: protein of unknown function DUF481; KEGG: son:SO0934 hypothetical protein; hypothetical protein 757337..758077 Shewanella frigidimarina NCIMB 400 4278173 YP_749351.1 CDS Sfri_0653 NC_008345.1 758599 759345 D KEGG: son:SO0940 transcriptional regulator-related protein; hypothetical protein 758599..759345 Shewanella frigidimarina NCIMB 400 4278174 YP_749352.1 CDS Sfri_0654 NC_008345.1 759362 759913 D hypothetical protein 759362..759913 Shewanella frigidimarina NCIMB 400 4278175 YP_749353.1 CDS Sfri_0655 NC_008345.1 760003 761445 D KEGG: son:SO0942 hypothetical protein; hypothetical protein 760003..761445 Shewanella frigidimarina NCIMB 400 4278176 YP_749354.1 CDS Sfri_0656 NC_008345.1 761606 763855 R KEGG: son:SO0943 sensory box protein, putative; sensory box protein complement(761606..763855) Shewanella frigidimarina NCIMB 400 4278177 YP_749355.1 CDS Sfri_0657 NC_008345.1 763946 764578 R PFAM: Radical SAM domain protein; KEGG: son:SO0944 hypothetical protein; radical SAM domain-containing protein complement(763946..764578) Shewanella frigidimarina NCIMB 400 4278178 YP_749356.1 CDS Sfri_0658 NC_008345.1 764724 767876 R PFAM: acriflavin resistance protein; KEGG: son:SO0945 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(764724..767876) Shewanella frigidimarina NCIMB 400 4278179 YP_749357.1 CDS Sfri_0659 NC_008345.1 767879 769078 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO0946 hypothetical protein; RND family efflux transporter MFP subunit complement(767879..769078) Shewanella frigidimarina NCIMB 400 4278180 YP_749358.1 CDS Sfri_0660 NC_008345.1 769532 770752 R facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB complement(769532..770752) Shewanella frigidimarina NCIMB 400 4278181 YP_749359.1 CDS Sfri_0661 NC_008345.1 770806 771561 R PFAM: methyltransferase small; KEGG: son:SO0948 hypothetical protein; methyltransferase small complement(770806..771561) Shewanella frigidimarina NCIMB 400 4278182 YP_749360.1 CDS Sfri_0662 NC_008345.1 772058 773374 D PFAM: branched-chain amino acid transport system II carrier protein; KEGG: son:SO0949 branched-chain amino acid transport system II carrier protein BrnQ; branched-chain amino acid transport system II carrier protein 772058..773374 Shewanella frigidimarina NCIMB 400 4278183 YP_749361.1 CDS Sfri_0663 NC_008345.1 773452 774369 D TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO0950 integrase/recombinase XerD; tyrosine recombinase XerD 773452..774369 Shewanella frigidimarina NCIMB 400 4278184 YP_749362.1 CDS Sfri_0664 NC_008345.1 774487 775242 D KEGG: son:SO0951 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 774487..775242 Shewanella frigidimarina NCIMB 400 4278185 YP_749363.1 CDS Sfri_0665 NC_008345.1 775358 777082 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: son:SO0952 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 775358..777082 Shewanella frigidimarina NCIMB 400 4278186 YP_749364.1 CDS Sfri_0666 NC_008345.1 777913 778674 R KEGG: son:SO3580 putative lipoprotein; putative lipoprotein complement(777913..778674) Shewanella frigidimarina NCIMB 400 4278187 YP_749365.1 CDS Sfri_0667 NC_008345.1 778798 779772 D KEGG: pha:PSHAa0933 pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 778798..779772 Shewanella frigidimarina NCIMB 400 4278188 YP_749366.1 CDS Sfri_0668 NC_008345.1 779772 780500 D PFAM: protein of unknown function DUF152; KEGG: son:SO3578 conserved hypothetical protein TIGR00726; hypothetical protein 779772..780500 Shewanella frigidimarina NCIMB 400 4278189 YP_749367.1 CDS Sfri_0669 NC_008345.1 780641 783238 D PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: son:SO3577 clpB protein; ATPase 780641..783238 Shewanella frigidimarina NCIMB 400 4277211 YP_749368.1 CDS Sfri_0670 NC_008345.1 783300 783743 R KEGG: son:SO3576 hypothetical protein; hypothetical protein complement(783300..783743) Shewanella frigidimarina NCIMB 400 4277212 YP_749369.1 CDS Sfri_0671 NC_008345.1 783843 784667 D KEGG: son:SO3575 CDP-diacylglycerol--serine O-phosphatidyltransferase, putative; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 783843..784667 Shewanella frigidimarina NCIMB 400 4277213 YP_749370.1 CDS Sfri_0672 NC_008345.1 791293 791826 R KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB complement(791293..791826) Shewanella frigidimarina NCIMB 400 4277214 YP_749371.1 CDS Sfri_0673 NC_008345.1 791840 792319 R KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA complement(791840..792319) Shewanella frigidimarina NCIMB 400 4277215 YP_749372.1 CDS Sfri_0674 NC_008345.1 798590 799123 R KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB complement(798590..799123) Shewanella frigidimarina NCIMB 400 4277216 YP_749373.1 CDS Sfri_0675 NC_008345.1 799137 799616 R KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA complement(799137..799616) Shewanella frigidimarina NCIMB 400 4277217 YP_749374.1 CDS Sfri_0677 NC_008345.1 801030 802082 R PFAM: porin, Gram-negative type; KEGG: cps:CPS_3847 porin; porin complement(801030..802082) Shewanella frigidimarina NCIMB 400 4277218 YP_749375.1 CDS frdB NC_008345.1 802323 803048 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit complement(802323..803048) Shewanella frigidimarina NCIMB 400 4277219 YP_749376.1 CDS Sfri_0679 NC_008345.1 803045 805054 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit complement(803045..805054) Shewanella frigidimarina NCIMB 400 4277220 YP_749377.1 CDS Sfri_0680 NC_008345.1 805258 805983 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit complement(805258..805983) Shewanella frigidimarina NCIMB 400 4277221 YP_749378.1 CDS Sfri_0681 NC_008345.1 806121 807368 R TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter; KEGG: vfi:VF2354 anaerobic C4-dicarboxylate transporter; anaerobic c4-dicarboxylate antiporter complement(806121..807368) Shewanella frigidimarina NCIMB 400 4277222 YP_749379.1 CDS aspA NC_008345.1 807535 808977 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(807535..808977) Shewanella frigidimarina NCIMB 400 4277223 YP_749380.1 CDS Sfri_0683 NC_008345.1 809484 810434 D KEGG: vpa:VPA0374 periplasmic L-asparaginase II; TIGRFAM: L-asparaginases, type II; PFAM: Asparaginase/glutaminase; L-asparaginases, type II 809484..810434 Shewanella frigidimarina NCIMB 400 4277224 YP_749381.1 CDS Sfri_0684 NC_008345.1 810479 810790 D PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 810479..810790 Shewanella frigidimarina NCIMB 400 4277225 YP_749382.1 CDS Sfri_0685 NC_008345.1 810844 811656 D PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 810844..811656 Shewanella frigidimarina NCIMB 400 4277226 YP_749383.1 CDS Sfri_0687 NC_008345.1 812668 814029 R KEGG: vpa:VP1880 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(812668..814029) Shewanella frigidimarina NCIMB 400 4277227 YP_749384.1 CDS Sfri_0688 NC_008345.1 814097 815356 R PFAM: aromatic amino acid permease; KEGG: vpa:VP1879 serine transporter; aromatic amino acid permease complement(814097..815356) Shewanella frigidimarina NCIMB 400 4278731 YP_749385.1 CDS Sfri_0689 NC_008345.1 815553 816230 R PFAM: YheO domain protein; KEGG: vvy:VV1021 hypothetical protein; YheO domain-containing protein complement(815553..816230) Shewanella frigidimarina NCIMB 400 4278732 YP_749386.1 CDS Sfri_0690 NC_008345.1 816774 817148 D KEGG: son:SO1159 hypothetical protein; hypothetical protein 816774..817148 Shewanella frigidimarina NCIMB 400 4278733 YP_749387.1 CDS Sfri_0691 NC_008345.1 817135 817593 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: son:SO1160 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 817135..817593 Shewanella frigidimarina NCIMB 400 4278734 YP_749388.1 CDS Sfri_0692 NC_008345.1 817670 818635 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(817670..818635) Shewanella frigidimarina NCIMB 400 4278735 YP_749389.1 CDS lipB NC_008345.1 818635 819285 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(818635..819285) Shewanella frigidimarina NCIMB 400 4278736 YP_749390.1 CDS Sfri_0694 NC_008345.1 819389 819655 R PFAM: protein of unknown function DUF493; KEGG: son:SO1163 hypothetical protein; hypothetical protein complement(819389..819655) Shewanella frigidimarina NCIMB 400 4278737 YP_749391.1 CDS Sfri_0695 NC_008345.1 819811 821022 R PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: son:SO1164 D-alanyl-D-alanine carboxypeptidase; Serine-type D-Ala-D-Ala carboxypeptidase complement(819811..821022) Shewanella frigidimarina NCIMB 400 4278738 YP_749392.1 CDS Sfri_0696 NC_008345.1 821176 821988 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: son:SO1165 rare lipoprotein A; rare lipoprotein A complement(821176..821988) Shewanella frigidimarina NCIMB 400 4278739 YP_749393.1 CDS Sfri_0697 NC_008345.1 821978 822991 R TIGRFAM: lytic murein transglycosylase B; KEGG: son:SO1166 membrane-bound lytic transglycosylase, putative; lytic murein transglycosylase B complement(821978..822991) Shewanella frigidimarina NCIMB 400 4278740 YP_749394.1 CDS Sfri_0698 NC_008345.1 823006 824127 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: son:SO1167 rod shape-determining protein RodA; rod shape-determining protein RodA complement(823006..824127) Shewanella frigidimarina NCIMB 400 4278741 YP_749395.1 CDS Sfri_0699 NC_008345.1 824109 825965 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: son:SO1168 penicillin-binding protein 2; peptidoglycan glycosyltransferase complement(824109..825965) Shewanella frigidimarina NCIMB 400 4278742 YP_749396.1 CDS Sfri_0700 NC_008345.1 826095 826565 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(826095..826565) Shewanella frigidimarina NCIMB 400 4278743 YP_749397.1 CDS Sfri_0701 NC_008345.1 826565 826894 R TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: son:SO1170 iojap domain protein; iojap family protein complement(826565..826894) Shewanella frigidimarina NCIMB 400 4278744 YP_749398.1 CDS Sfri_0702 NC_008345.1 827056 827691 R KEGG: son:SO1171 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(827056..827691) Shewanella frigidimarina NCIMB 400 4278745 YP_749399.1 CDS Sfri_0703 NC_008345.1 827713 828747 R KEGG: son:SO1172 DNA polymerase III delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta complement(827713..828747) Shewanella frigidimarina NCIMB 400 4278746 YP_749400.1 CDS Sfri_0704 NC_008345.1 828747 829256 R PFAM: Rare lipoprotein B; KEGG: son:SO1173 rare lipoprotein B; rare lipoprotein B complement(828747..829256) Shewanella frigidimarina NCIMB 400 4278747 YP_749401.1 CDS leuS NC_008345.1 829380 831998 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(829380..831998) Shewanella frigidimarina NCIMB 400 4278748 YP_749402.1 CDS Sfri_0706 NC_008345.1 832092 832592 D PFAM: protein of unknown function DUF1451; KEGG: son:SO1175 hypothetical protein; hypothetical protein 832092..832592 Shewanella frigidimarina NCIMB 400 4278348 YP_749403.1 CDS Sfri_0707 NC_008345.1 832609 832911 R hypothetical protein complement(832609..832911) Shewanella frigidimarina NCIMB 400 4278349 YP_749404.1 CDS Sfri_0708 NC_008345.1 833012 833524 R PFAM: methylation site containing protein; KEGG: son:SO1176 hypothetical protein; methylation site containing protein complement(833012..833524) Shewanella frigidimarina NCIMB 400 4278350 YP_749405.1 CDS lnt NC_008345.1 833537 835099 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(833537..835099) Shewanella frigidimarina NCIMB 400 4278351 YP_749406.1 CDS Sfri_0710 NC_008345.1 835103 835981 R PFAM: CBS domain containing protein; transporter-associated region; KEGG: son:SO1178 magnesium and cobalt efflux protein CorC; hypothetical protein complement(835103..835981) Shewanella frigidimarina NCIMB 400 4278352 YP_749407.1 CDS Sfri_0711 NC_008345.1 836027 836497 R PFAM: protein of unknown function UPF0054; KEGG: son:SO1179 conserved hypothetical protein TIGR00043; putative metalloprotease complement(836027..836497) Shewanella frigidimarina NCIMB 400 4278353 YP_749408.1 CDS Sfri_0712 NC_008345.1 836494 837537 R PFAM: PhoH family protein; KEGG: son:SO1180 PhoH family protein; PhoH family protein complement(836494..837537) Shewanella frigidimarina NCIMB 400 4278354 YP_749409.1 CDS Sfri_0713 NC_008345.1 837730 839154 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(837730..839154) Shewanella frigidimarina NCIMB 400 4278355 YP_749410.1 CDS Sfri_0714 NC_008345.1 839238 839645 R hypothetical protein complement(839238..839645) Shewanella frigidimarina NCIMB 400 4278356 YP_749411.1 CDS Sfri_0715 NC_008345.1 839857 841095 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: son:SO1183 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; ubiquinone biosynthesis hydroxylase 839857..841095 Shewanella frigidimarina NCIMB 400 4278357 YP_749412.1 CDS Sfri_0716 NC_008345.1 841314 841901 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 841314..841901 Shewanella frigidimarina NCIMB 400 4278358 YP_749413.1 CDS Sfri_0717 NC_008345.1 841979 843070 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 841979..843070 Shewanella frigidimarina NCIMB 400 4278359 YP_749414.1 CDS Sfri_0718 NC_008345.1 844392 845426 D PFAM: Patatin; KEGG: pha:PSHAb0541 putative hydrolase similar to YjjU; patatin 844392..845426 Shewanella frigidimarina NCIMB 400 4278360 YP_749415.1 CDS Sfri_0719 NC_008345.1 845685 846632 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(845685..846632) Shewanella frigidimarina NCIMB 400 4278361 YP_749416.1 CDS ipk NC_008345.1 846723 847595 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(846723..847595) Shewanella frigidimarina NCIMB 400 4278362 YP_749417.1 CDS Sfri_0721 NC_008345.1 847641 848252 R PFAM: outer membrane lipoprotein LolB; KEGG: son:SO3835 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB complement(847641..848252) Shewanella frigidimarina NCIMB 400 4278363 YP_749418.1 CDS hemA NC_008345.1 848490 849740 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 848490..849740 Shewanella frigidimarina NCIMB 400 4278364 YP_749419.1 CDS prfA NC_008345.1 849755 850840 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 849755..850840 Shewanella frigidimarina NCIMB 400 4277630 YP_749420.1 CDS Sfri_0724 NC_008345.1 850850 851704 D TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 12; KEGG: son:SO3832 hemK family protein; HemK family modification methylase 850850..851704 Shewanella frigidimarina NCIMB 400 4277631 YP_749421.1 CDS Sfri_0725 NC_008345.1 851829 852224 D PFAM: Invasion gene expression up-regulator, SirB; KEGG: son:SO3830 hypothetical protein; invasion gene expression up-regulator, SirB 851829..852224 Shewanella frigidimarina NCIMB 400 4277632 YP_749422.1 CDS Sfri_0726 NC_008345.1 852235 853023 D KEGG: son:SO3829 hypothetical protein; hypothetical protein 852235..853023 Shewanella frigidimarina NCIMB 400 4277633 YP_749423.1 CDS Sfri_0727 NC_008345.1 853217 854464 D PFAM: protein of unknown function DUF819; KEGG: son:SO3828 hypothetical protein; hypothetical protein 853217..854464 Shewanella frigidimarina NCIMB 400 4277634 YP_749424.1 CDS Sfri_0728 NC_008345.1 854482 855333 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 854482..855333 Shewanella frigidimarina NCIMB 400 4277635 YP_749425.1 CDS Sfri_0729 NC_008345.1 855503 856375 D KEGG: son:SO3822 hypothetical protein; hypothetical protein 855503..856375 Shewanella frigidimarina NCIMB 400 4277636 YP_749426.1 CDS Sfri_0730 NC_008345.1 856470 857438 R KEGG: son:SO3817 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase complement(856470..857438) Shewanella frigidimarina NCIMB 400 4277637 YP_749427.1 CDS Sfri_0731 NC_008345.1 857445 857801 R PFAM: VanZ family protein; KEGG: son:SO3816 hypothetical protein; VanZ family protein complement(857445..857801) Shewanella frigidimarina NCIMB 400 4277638 YP_749428.1 CDS Sfri_0732 NC_008345.1 858140 858625 D putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 858140..858625 Shewanella frigidimarina NCIMB 400 4277639 YP_749429.1 CDS Sfri_0733 NC_008345.1 859090 859476 D KEGG: son:SO0792 hypothetical protein; hypothetical protein 859090..859476 Shewanella frigidimarina NCIMB 400 4277640 YP_749430.1 CDS Sfri_0734 NC_008345.1 859821 860396 R PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: vpa:VP0636 putative outer membrane protein A; OmpA domain-containing protein complement(859821..860396) Shewanella frigidimarina NCIMB 400 4277641 YP_749431.1 CDS Sfri_0735 NC_008345.1 861223 861435 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: ppr:PBPRB0036 putative Cold shock-like protein; cold-shock DNA-binding domain-containing protein 861223..861435 Shewanella frigidimarina NCIMB 400 4277642 YP_749432.1 CDS Sfri_0736 NC_008345.1 861745 861975 D KEGG: son:SO0793 hypothetical protein; hypothetical protein 861745..861975 Shewanella frigidimarina NCIMB 400 4277643 YP_749433.1 CDS Sfri_0737 NC_008345.1 862520 863536 D KEGG: bbr:BB0920 hypothetical protein; hypothetical protein 862520..863536 Shewanella frigidimarina NCIMB 400 4277644 YP_749434.1 CDS Sfri_0738 NC_008345.1 864240 866426 D TIGRFAM: uncharacterized domain; PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: cps:CPS_1756 hypothetical protein; hypothetical protein 864240..866426 Shewanella frigidimarina NCIMB 400 4277645 YP_749435.1 CDS Sfri_0739 NC_008345.1 866514 868001 R KEGG: mhu:Mhun_2822 spore coat assembly protein-like; spore coat assembly protein-like protein complement(866514..868001) Shewanella frigidimarina NCIMB 400 4277646 YP_749436.1 CDS Sfri_0740 NC_008345.1 868349 869752 D hypothetical protein 868349..869752 Shewanella frigidimarina NCIMB 400 4277647 YP_749437.1 CDS Sfri_0741 NC_008345.1 869889 870137 D KEGG: ppr:PBPRB1083 hypothetical protein; hypothetical protein 869889..870137 Shewanella frigidimarina NCIMB 400 4278278 YP_749438.1 CDS Sfri_0742 NC_008345.1 870214 871416 R PFAM: Rh family protein/ammonium transporter; KEGG: ppr:PBPRB0379 putative ammonium permease; Rh family protein/ammonium transporter complement(870214..871416) Shewanella frigidimarina NCIMB 400 4278279 YP_749439.1 CDS Sfri_0743 NC_008345.1 871832 873001 D KEGG: cps:CPS_0669 lipid-transfer protein; lipid-transfer protein 871832..873001 Shewanella frigidimarina NCIMB 400 4278280 YP_749440.1 CDS Sfri_0745 NC_008345.1 874696 875238 D KEGG: par:Psyc_1394 hypothetical protein; hypothetical protein 874696..875238 Shewanella frigidimarina NCIMB 400 4278281 YP_749441.1 CDS Sfri_0746 NC_008345.1 875419 876066 D PFAM: DSBA oxidoreductase; KEGG: pst:PSPTO4177 2-hydroxychromene-2-carboxylate isomerase family protein; DSBA oxidoreductase 875419..876066 Shewanella frigidimarina NCIMB 400 4278282 YP_749442.1 CDS Sfri_0747 NC_008345.1 876116 878461 R TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: eca:ECA1964 putative molybdopterin oxidoreductase; oxidoreductase alpha (molybdopterin) subunit complement(876116..878461) Shewanella frigidimarina NCIMB 400 4278283 YP_749443.1 CDS Sfri_0748 NC_008345.1 878454 879269 R TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; KEGG: pfo:Pfl_0280 formate dehydrogenase, subunit FdhD; formate dehydrogenase family accessory protein FdhD complement(878454..879269) Shewanella frigidimarina NCIMB 400 4278284 YP_749444.1 CDS Sfri_0749 NC_008345.1 879404 880303 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VPA0961 putative transcriptional regulator; transcriptional regulator, LysR family protein 879404..880303 Shewanella frigidimarina NCIMB 400 4278285 YP_749445.1 CDS Sfri_0750 NC_008345.1 880644 880928 D PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO1850 DnaJ domain protein; heat shock protein DnaJ domain-containing protein 880644..880928 Shewanella frigidimarina NCIMB 400 4278286 YP_749446.1 CDS Sfri_0751 NC_008345.1 880936 881463 D KEGG: son:SO1849 hypothetical protein; hypothetical protein 880936..881463 Shewanella frigidimarina NCIMB 400 4278287 YP_749447.1 CDS Sfri_0752 NC_008345.1 881460 882215 D KEGG: son:SO1848 hypothetical protein; hypothetical protein 881460..882215 Shewanella frigidimarina NCIMB 400 4278288 YP_749448.1 CDS Sfri_0753 NC_008345.1 882227 883120 D KEGG: son:SO1846 hypothetical protein; hypothetical protein 882227..883120 Shewanella frigidimarina NCIMB 400 4278289 YP_749449.1 CDS Sfri_0754 NC_008345.1 883550 883861 D PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 883550..883861 Shewanella frigidimarina NCIMB 400 4278290 YP_749450.1 CDS Sfri_0755 NC_008345.1 883915 884727 D PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 883915..884727 Shewanella frigidimarina NCIMB 400 4278291 YP_749451.1 CDS Sfri_0756 NC_008345.1 884915 885307 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nwi:Nwi_1214 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 884915..885307 Shewanella frigidimarina NCIMB 400 4278292 YP_749452.1 CDS Sfri_0757 NC_008345.1 885546 886775 D PFAM: sodium:dicarboxylate symporter; KEGG: oih:OB1282 H(+):sodium-glutamate symporter; sodium:dicarboxylate symporter 885546..886775 Shewanella frigidimarina NCIMB 400 4278293 YP_749453.1 CDS Sfri_0758 NC_008345.1 886809 888023 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pha:PSHAa2647 conserved protein of unknown function with GGDEF domain; diguanylate cyclase complement(886809..888023) Shewanella frigidimarina NCIMB 400 4278294 YP_749454.1 CDS Sfri_0760 NC_008345.1 888658 889206 D PFAM: NUDIX hydrolase; KEGG: ppr:PBPRB0617 putative MutT/NUDIX family protein; NUDIX hydrolase 888658..889206 Shewanella frigidimarina NCIMB 400 4277927 YP_749455.1 CDS Sfri_0761 NC_008345.1 889308 890186 R KEGG: ppr:PBPRA3144 putative pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase complement(889308..890186) Shewanella frigidimarina NCIMB 400 4277928 YP_749456.1 CDS Sfri_0762 NC_008345.1 890224 891471 R TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: pha:PSHAa0280 gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase complement(890224..891471) Shewanella frigidimarina NCIMB 400 4277929 YP_749457.1 CDS Sfri_0763 NC_008345.1 891468 892574 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(891468..892574) Shewanella frigidimarina NCIMB 400 4277930 YP_749458.1 CDS Sfri_0764 NC_008345.1 892589 894085 R TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: cps:CPS_3463 proline/sodium symporter; sodium/proline symporter complement(892589..894085) Shewanella frigidimarina NCIMB 400 4277931 YP_749459.1 CDS Sfri_0765 NC_008345.1 895110 895778 D PFAM: regulatory protein, TetR; KEGG: psb:Psyr_2754 regulatory protein, TetR; transcriptional regulator, TetR family protein 895110..895778 Shewanella frigidimarina NCIMB 400 4277932 YP_749460.1 CDS Sfri_0766 NC_008345.1 895826 896809 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: psb:Psyr_2753 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase 895826..896809 Shewanella frigidimarina NCIMB 400 4277933 YP_749461.1 CDS Sfri_0767 NC_008345.1 897038 899083 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1500 sensory box protein; diguanylate cyclase/phosphodiesterase complement(897038..899083) Shewanella frigidimarina NCIMB 400 4277934 YP_749462.1 CDS Sfri_0768 NC_008345.1 899088 899618 R KEGG: gme:Gmet_1668 putative transmembrane protein; hypothetical protein complement(899088..899618) Shewanella frigidimarina NCIMB 400 4277935 YP_749463.1 CDS Sfri_0769 NC_008345.1 899627 901690 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug; TonB-dependent receptor, plug complement(899627..901690) Shewanella frigidimarina NCIMB 400 4277936 YP_749464.1 CDS Sfri_0770 NC_008345.1 902012 902527 D KEGG: ppr:PBPRB1424 hypothetical protein; hypothetical protein 902012..902527 Shewanella frigidimarina NCIMB 400 4277937 YP_749465.1 CDS Sfri_0771 NC_008345.1 902892 905474 D PFAM: peptidase S45, penicillin amidase; KEGG: son:SO0918 aculeacin A acylase; peptidase S45, penicillin amidase 902892..905474 Shewanella frigidimarina NCIMB 400 4277938 YP_749466.1 CDS Sfri_0772 NC_008345.1 906036 907505 D PFAM: carbon starvation protein CstA; KEGG: pha:PSHAb0210 cold-shock regulated carbon starvation protein A; carbon starvation protein CstA 906036..907505 Shewanella frigidimarina NCIMB 400 4277939 YP_749467.1 CDS Sfri_0773 NC_008345.1 907584 908798 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4404 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin complement(907584..908798) Shewanella frigidimarina NCIMB 400 4277940 YP_749468.1 CDS Sfri_0774 NC_008345.1 909042 910064 D KEGG: son:SO1975 zinc carboxypeptidase-related protein; zinc carboxypeptidase-related protein 909042..910064 Shewanella frigidimarina NCIMB 400 4277941 YP_749469.1 CDS Sfri_0775 NC_008345.1 910084 910878 D PFAM: alpha/beta hydrolase fold; KEGG: son:SO1976 hydrolase, alpha/beta fold family; alpha/beta hydrolase 910084..910878 Shewanella frigidimarina NCIMB 400 4277942 YP_749470.1 CDS Sfri_0776 NC_008345.1 911065 911964 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vvy:VVA0252 transcriptional regulator; transcriptional regulator, LysR family protein complement(911065..911964) Shewanella frigidimarina NCIMB 400 4277943 YP_749471.1 CDS Sfri_0777 NC_008345.1 911993 913579 R PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: son:SO4169 hypothetical protein; deoxyribodipyrimidine photolyase-like protein complement(911993..913579) Shewanella frigidimarina NCIMB 400 4277944 YP_749472.1 CDS Sfri_0778 NC_008345.1 913591 913731 R KEGG: csa:Csal_0772 hypothetical protein; hypothetical protein complement(913591..913731) Shewanella frigidimarina NCIMB 400 4278696 YP_749473.1 CDS Sfri_0779 NC_008345.1 913721 915235 R PFAM: DNA photolyase, FAD-binding; KEGG: pha:PSHAa2200 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase complement(913721..915235) Shewanella frigidimarina NCIMB 400 4278697 YP_749474.1 CDS Sfri_0780 NC_008345.1 915440 916078 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: son:SO0768 putative NADH-flavin reductase; NAD-dependent epimerase/dehydratase 915440..916078 Shewanella frigidimarina NCIMB 400 4278698 YP_749475.1 CDS Sfri_0781 NC_008345.1 916928 918748 D PFAM: KAP P-loop domain protein; KEGG: sar:SAR1897 hypothetical protein; KAP P-loop domain-containing protein 916928..918748 Shewanella frigidimarina NCIMB 400 4278699 YP_749476.1 CDS Sfri_0783 NC_008345.1 919350 920252 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VP2378 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(919350..920252) Shewanella frigidimarina NCIMB 400 4278700 YP_749477.1 CDS Sfri_0784 NC_008345.1 920452 921420 D PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: vch:VC2323 hypothetical protein; C4-dicarboxylate transporter/malic acid transport protein 920452..921420 Shewanella frigidimarina NCIMB 400 4278701 YP_749478.1 CDS Sfri_0785 NC_008345.1 921435 921908 D TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ilo:IL0308 hypothetical protein; ybaK/ebsC protein 921435..921908 Shewanella frigidimarina NCIMB 400 4278702 YP_749479.1 CDS Sfri_0786 NC_008345.1 922292 922993 R KEGG: son:SO3571 hypothetical protein; hypothetical protein complement(922292..922993) Shewanella frigidimarina NCIMB 400 4278703 YP_749480.1 CDS Sfri_0787 NC_008345.1 923058 923903 R PFAM: pseudouridine synthase; KEGG: cps:CPS_3679 RNA pseudouridine synthase family protein; pseudouridine synthase complement(923058..923903) Shewanella frigidimarina NCIMB 400 4278704 YP_749481.1 CDS Sfri_0788 NC_008345.1 924085 924861 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 924085..924861 Shewanella frigidimarina NCIMB 400 4278705 YP_749482.1 CDS Sfri_0789 NC_008345.1 924971 925813 R PFAM: sulfotransferase; KEGG: rru:Rru_A1463 sulfotransferase; sulfotransferase complement(924971..925813) Shewanella frigidimarina NCIMB 400 4278706 YP_749483.1 CDS Sfri_0790 NC_008345.1 926338 927828 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: vfi:VFA1052 sulfate transporter; sulfate transporter 926338..927828 Shewanella frigidimarina NCIMB 400 4278707 YP_749484.1 CDS Sfri_0791 NC_008345.1 927858 928715 D PFAM: UspA domain protein; KEGG: plt:Plut_0944 UspA-related nucleotide-binding protein; UspA domain-containing protein 927858..928715 Shewanella frigidimarina NCIMB 400 4278708 YP_749485.1 CDS Sfri_0792 NC_008345.1 929140 933360 R TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO0988 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha complement(929140..933360) Shewanella frigidimarina NCIMB 400 4278709 YP_749486.1 CDS Sfri_0793 NC_008345.1 933803 934519 R PFAM: protein of unknown function DUF541; KEGG: son:SO4070 hypothetical protein; hypothetical protein complement(933803..934519) Shewanella frigidimarina NCIMB 400 4278710 YP_749487.1 CDS Sfri_0794 NC_008345.1 934684 935589 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_A1003 regulatory protein, LysR:LysR, substrate-binding; transcriptional regulator, LysR family protein complement(934684..935589) Shewanella frigidimarina NCIMB 400 4278711 YP_749488.1 CDS Sfri_0795 NC_008345.1 935681 936496 D PFAM: class II aldolase/adducin family protein; KEGG: rso:RSc1767 hypothetical protein; hypothetical protein 935681..936496 Shewanella frigidimarina NCIMB 400 4278712 YP_749489.1 CDS Sfri_0796 NC_008345.1 936633 937526 D PFAM: Bile acid:sodium symporter; KEGG: syn:sll1428 P3 protein; bile acid:sodium symporter 936633..937526 Shewanella frigidimarina NCIMB 400 4277892 YP_749490.1 CDS Sfri_0797 NC_008345.1 937732 938856 R KEGG: son:SO1695 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(937732..938856) Shewanella frigidimarina NCIMB 400 4277893 YP_749491.1 CDS Sfri_0798 NC_008345.1 939390 939773 R KEGG: son:SO1698 hypothetical protein; hypothetical protein complement(939390..939773) Shewanella frigidimarina NCIMB 400 4277894 YP_749492.1 CDS Sfri_0799 NC_008345.1 939783 943091 R PFAM: TPR repeat-containing protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO1699 transcriptional regulator; transcriptional regulator CadC complement(939783..943091) Shewanella frigidimarina NCIMB 400 4277895 YP_749493.1 CDS Sfri_0800 NC_008345.1 943297 944262 R PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; KEGG: bja:bll0134 2-dehydropantoate 2-reductase; 2-dehydropantoate 2-reductase complement(943297..944262) Shewanella frigidimarina NCIMB 400 4277896 YP_749494.1 CDS Sfri_0801 NC_008345.1 944402 945715 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cps:CPS_1348 putative Xaa-Pro dipeptidase; amidohydrolase 944402..945715 Shewanella frigidimarina NCIMB 400 4277897 YP_749495.1 CDS Sfri_0802 NC_008345.1 946091 947056 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: syf:Synpcc7942_1811 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; diguanylate cyclase 946091..947056 Shewanella frigidimarina NCIMB 400 4277898 YP_749496.1 CDS Sfri_0803 NC_008345.1 947260 947706 R PFAM: regulatory protein, MarR; KEGG: pae:PA2849 probable transcriptional regulator; transcriptional regulator, MarR family protein complement(947260..947706) Shewanella frigidimarina NCIMB 400 4277899 YP_749497.1 CDS Sfri_0804 NC_008345.1 947912 948940 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: vpa:VPA1416 putative oxidoreductase; alcohol dehydrogenase 947912..948940 Shewanella frigidimarina NCIMB 400 4277900 YP_749498.1 CDS Sfri_0805 NC_008345.1 948984 949661 D PFAM: ThiJ/PfpI domain protein; KEGG: psp:PSPPH_3239 ThiJ/PfpI family protein; ThiJ/PfpI domain-containing protein 948984..949661 Shewanella frigidimarina NCIMB 400 4277901 YP_749499.1 CDS Sfri_0806 NC_008345.1 949794 950414 D PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: pha:PSHAb0122 putative glutathione S-transferase; glutathione S-transferase domain-containing protein 949794..950414 Shewanella frigidimarina NCIMB 400 4277902 YP_749500.1 CDS Sfri_0807 NC_008345.1 950638 951237 D KEGG: cps:CPS_1725 hypothetical protein; hypothetical protein 950638..951237 Shewanella frigidimarina NCIMB 400 4277903 YP_749501.1 CDS Sfri_0808 NC_008345.1 951227 952060 R KEGG: son:SO3722 hypothetical protein; hypothetical protein complement(951227..952060) Shewanella frigidimarina NCIMB 400 4277904 YP_749502.1 CDS Sfri_0809 NC_008345.1 952126 953349 R PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_0120 transporter, MFS superfamily; major facilitator transporter complement(952126..953349) Shewanella frigidimarina NCIMB 400 4277905 YP_749503.1 CDS Sfri_0810 NC_008345.1 953546 954949 D KEGG: cps:CPS_0693 hypothetical protein; hypothetical protein 953546..954949 Shewanella frigidimarina NCIMB 400 4277906 YP_749504.1 CDS Sfri_0811 NC_008345.1 954993 956156 D KEGG: cps:CPS_0694 putative lipoprotein; putative lipoprotein 954993..956156 Shewanella frigidimarina NCIMB 400 4277907 YP_749505.1 CDS Sfri_0812 NC_008345.1 956299 957927 D PFAM: protein of unknown function DUF1111; KEGG: cps:CPS_0695 putative lipoprotein; hypothetical protein 956299..957927 Shewanella frigidimarina NCIMB 400 4277908 YP_749506.1 CDS Sfri_0813 NC_008345.1 958120 958641 D KEGG: son:SO3720 protoporphyrinogen oxidase; protoporphyrinogen oxidase 958120..958641 Shewanella frigidimarina NCIMB 400 4277909 YP_749507.1 CDS Sfri_0814 NC_008345.1 958645 959160 D KEGG: son:SO3719 hypothetical protein; hypothetical protein 958645..959160 Shewanella frigidimarina NCIMB 400 4278767 YP_749508.1 CDS Sfri_0815 NC_008345.1 959231 960130 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_4921 substrate-binding transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(959231..960130) Shewanella frigidimarina NCIMB 400 4278768 YP_749509.1 CDS Sfri_0816 NC_008345.1 960263 961234 D PFAM: aldo/keto reductase; KEGG: pha:PSHAa0541 oxidoreductase, aldo/keto reductase; aldo/keto reductase 960263..961234 Shewanella frigidimarina NCIMB 400 4278769 YP_749510.1 CDS Sfri_0817 NC_008345.1 961308 963107 D PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: cps:CPS_0985 putative alpha amylase; alpha amylase, catalytic region 961308..963107 Shewanella frigidimarina NCIMB 400 4278770 YP_749511.1 CDS Sfri_0818 NC_008345.1 963168 963824 R PFAM: DSBA oxidoreductase; KEGG: son:SO3718 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase complement(963168..963824) Shewanella frigidimarina NCIMB 400 4278771 YP_749512.1 CDS Sfri_0819 NC_008345.1 964284 964943 R PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO3716 DnaJ domain protein; heat shock protein DnaJ domain-containing protein complement(964284..964943) Shewanella frigidimarina NCIMB 400 4278772 YP_749513.1 CDS Sfri_0820 NC_008345.1 965302 965868 D KEGG: son:SO0807 hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase 965302..965868 Shewanella frigidimarina NCIMB 400 4278773 YP_749514.1 CDS Sfri_0821 NC_008345.1 966001 967935 D PFAM: peptidase U32; KEGG: son:SO3797 peptidase, U32 family; peptidase U32 966001..967935 Shewanella frigidimarina NCIMB 400 4278774 YP_749515.1 CDS Sfri_0822 NC_008345.1 968130 968453 D KEGG: son:SO0808 hypothetical protein; hypothetical protein 968130..968453 Shewanella frigidimarina NCIMB 400 4278775 YP_749516.1 CDS Sfri_0823 NC_008345.1 968579 969244 D hypothetical protein 968579..969244 Shewanella frigidimarina NCIMB 400 4278776 YP_749517.1 CDS Sfri_0824 NC_008345.1 969911 971890 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0815 TonB-dependent receptor C-terminal domain protein; TonB-dependent receptor, plug 969911..971890 Shewanella frigidimarina NCIMB 400 4278777 YP_749518.1 CDS Sfri_0825 NC_008345.1 972004 972750 D KEGG: son:SO0816 hypothetical protein; putative signal transduction protein 972004..972750 Shewanella frigidimarina NCIMB 400 4278778 YP_749519.1 CDS Sfri_0826 NC_008345.1 972733 973635 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0817 transcriptional activator protein MetR; transcriptional regulator, LysR family protein complement(972733..973635) Shewanella frigidimarina NCIMB 400 4278779 YP_749520.1 CDS Sfri_0829 NC_008345.1 974405 974680 D PFAM: protein of unknown function DUF1458; KEGG: rso:RS05065 hypothetical protein; hypothetical protein 974405..974680 Shewanella frigidimarina NCIMB 400 4278780 YP_749521.1 CDS Sfri_0830 NC_008345.1 974702 975988 R TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: son:SO3861 iron-sulfur cluster-binding protein; putative iron-sulfur cluster binding protein complement(974702..975988) Shewanella frigidimarina NCIMB 400 4278781 YP_749522.1 CDS Sfri_0831 NC_008345.1 975972 977855 R KEGG: cps:CPS_0629 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase complement(975972..977855) Shewanella frigidimarina NCIMB 400 4278782 YP_749523.1 CDS Sfri_0832 NC_008345.1 978274 978708 D KEGG: son:SO3856 hypothetical protein; hypothetical protein 978274..978708 Shewanella frigidimarina NCIMB 400 4278783 YP_749524.1 CDS Sfri_0833 NC_008345.1 978865 980553 R malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase complement(978865..980553) Shewanella frigidimarina NCIMB 400 4276930 YP_749525.1 CDS Sfri_0834 NC_008345.1 980840 981304 R PFAM: protein of unknown function DUF1456; KEGG: son:SO3852 hypothetical protein; hypothetical protein complement(980840..981304) Shewanella frigidimarina NCIMB 400 4276931 YP_749526.1 CDS Sfri_0835 NC_008345.1 981506 982771 R KEGG: vpa:VP2681 putative manganese transporter; putative manganese transporter complement(981506..982771) Shewanella frigidimarina NCIMB 400 4276932 YP_749527.1 CDS Sfri_0836 NC_008345.1 982784 983323 R PFAM: membrane-flanked domain; KEGG: son:SO3849 hypothetical protein; membrane-flanked domain-containing protein complement(982784..983323) Shewanella frigidimarina NCIMB 400 4276933 YP_749528.1 CDS Sfri_0837 NC_008345.1 983548 986115 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa0840 TonB-dependent receptor; TonB-dependent receptor 983548..986115 Shewanella frigidimarina NCIMB 400 4276934 YP_749529.1 CDS Sfri_0838 NC_008345.1 986163 986846 D PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: sme:SMb20420 putative glutathione S-transferase protein; glutathione S-transferase domain-containing protein 986163..986846 Shewanella frigidimarina NCIMB 400 4276935 YP_749530.1 CDS Sfri_0839 NC_008345.1 986909 987421 R KEGG: son:SO3848 hypothetical protein; hypothetical protein complement(986909..987421) Shewanella frigidimarina NCIMB 400 4276936 YP_749531.1 CDS Sfri_0840 NC_008345.1 987501 987902 R KEGG: son:SO3847 hypothetical protein; hypothetical protein complement(987501..987902) Shewanella frigidimarina NCIMB 400 4276937 YP_749532.1 CDS Sfri_0841 NC_008345.1 988018 988797 R KEGG: son:SO3846 hypothetical protein; hypothetical protein complement(988018..988797) Shewanella frigidimarina NCIMB 400 4276938 YP_749533.1 CDS Sfri_0842 NC_008345.1 989013 991100 R PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO3844 peptidase, M13 family; endothelin-converting protein 1 complement(989013..991100) Shewanella frigidimarina NCIMB 400 4276939 YP_749534.1 CDS Sfri_0843 NC_008345.1 991393 992082 D TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ssn:SSO_2239 16S pseudouridylate 516 synthase; pseudouridine synthase, Rsu 991393..992082 Shewanella frigidimarina NCIMB 400 4276940 YP_749535.1 CDS Sfri_0844 NC_008345.1 992287 993225 R KEGG: son:SO3842 hypothetical protein; hypothetical protein complement(992287..993225) Shewanella frigidimarina NCIMB 400 4276941 YP_749536.1 CDS Sfri_0845 NC_008345.1 993222 993830 R KEGG: son:SO3841 hypothetical protein; hypothetical protein complement(993222..993830) Shewanella frigidimarina NCIMB 400 4276942 YP_749537.1 CDS Sfri_0846 NC_008345.1 993827 994324 R PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO3840 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(993827..994324) Shewanella frigidimarina NCIMB 400 4276943 YP_749538.1 CDS Sfri_0847 NC_008345.1 994624 996486 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3838 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 994624..996486 Shewanella frigidimarina NCIMB 400 4276944 YP_749539.1 CDS Sfri_0848 NC_008345.1 996639 997298 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(996639..997298) Shewanella frigidimarina NCIMB 400 4276945 YP_749540.1 CDS Sfri_0849 NC_008345.1 997363 998175 R PFAM: MscS Mechanosensitive ion channel; KEGG: pca:Pcar_2715 small-conductance mechanosensitive channel; MscS mechanosensitive ion channel complement(997363..998175) Shewanella frigidimarina NCIMB 400 4276946 YP_749541.1 CDS Sfri_0850 NC_008345.1 998187 999539 R KEGG: pca:Pcar_2714 hypothetical protein; hypothetical protein complement(998187..999539) Shewanella frigidimarina NCIMB 400 4276947 YP_749542.1 CDS pbpG NC_008345.1 999830 1000738 D specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 999830..1000738 Shewanella frigidimarina NCIMB 400 4278679 YP_749543.1 CDS Sfri_0852 NC_008345.1 1000910 1001554 D KEGG: ilo:IL0065 predicted transcription negative regulator; anti-ECFsigma factor ChrR 1000910..1001554 Shewanella frigidimarina NCIMB 400 4278680 YP_749544.1 CDS Sfri_0853 NC_008345.1 1001641 1002258 D PFAM: Negative transcriptional regulator; KEGG: gka:GK0739 transcriptional repressor of sporulation and degradative enzyme production; negative transcriptional regulator 1001641..1002258 Shewanella frigidimarina NCIMB 400 4278681 YP_749545.1 CDS Sfri_0854 NC_008345.1 1002358 1003656 D PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_1258 putative MFS transporter family protein; major facilitator transporter 1002358..1003656 Shewanella frigidimarina NCIMB 400 4278682 YP_749546.1 CDS Sfri_0855 NC_008345.1 1003892 1004242 D KEGG: vfi:VFA0727 hypothetical cytosolic protein; hypothetical protein 1003892..1004242 Shewanella frigidimarina NCIMB 400 4278683 YP_749547.1 CDS Sfri_0856 NC_008345.1 1004418 1004966 D PFAM: methylation site containing protein; KEGG: son:SO3781 hypothetical protein; methylation site containing protein 1004418..1004966 Shewanella frigidimarina NCIMB 400 4278684 YP_749548.1 CDS Sfri_0857 NC_008345.1 1005349 1005837 D KEGG: nmu:Nmul_A1768 hypothetical protein; hypothetical protein 1005349..1005837 Shewanella frigidimarina NCIMB 400 4278685 YP_749549.1 CDS Sfri_0858 NC_008345.1 1005955 1007244 R PFAM: cytochrome c, class I; KEGG: pae:PA4619 probable C-type cytochrome; cytochrome c, class I complement(1005955..1007244) Shewanella frigidimarina NCIMB 400 4278686 YP_749550.1 CDS Sfri_0859 NC_008345.1 1007241 1007777 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bur:Bcep18194_B1542 (2Fe-2S)-binding protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(1007241..1007777) Shewanella frigidimarina NCIMB 400 4278687 YP_749551.1 CDS Sfri_0860 NC_008345.1 1007774 1010647 R PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: pfo:Pfl_1905 twin-arginine translocation pathway signal; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase complement(1007774..1010647) Shewanella frigidimarina NCIMB 400 4278688 YP_749552.1 CDS Sfri_0861 NC_008345.1 1011558 1013186 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3582 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1011558..1013186 Shewanella frigidimarina NCIMB 400 4278689 YP_749553.1 CDS Sfri_0862 NC_008345.1 1013523 1014809 D PFAM: acetyl-CoA hydrolase/transferase; KEGG: son:SO1708 4-hydroxybutyrate coenzyme A transferase; acetyl-CoA hydrolase/transferase 1013523..1014809 Shewanella frigidimarina NCIMB 400 4278690 YP_749554.1 CDS Sfri_0863 NC_008345.1 1015589 1016314 D hypothetical protein 1015589..1016314 Shewanella frigidimarina NCIMB 400 4278691 YP_749555.1 CDS Sfri_0864 NC_008345.1 1016762 1017805 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: sde:Sde_3077 response regulator receiver domain protein (CheY-like); transposase IS116/IS110/IS902 family protein complement(1016762..1017805) Shewanella frigidimarina NCIMB 400 4278692 YP_749556.1 CDS Sfri_0865 NC_008345.1 1018193 1018504 D PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 1018193..1018504 Shewanella frigidimarina NCIMB 400 4278693 YP_749557.1 CDS Sfri_0866 NC_008345.1 1018558 1019370 D PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 1018558..1019370 Shewanella frigidimarina NCIMB 400 4278694 YP_749558.1 CDS Sfri_0867 NC_008345.1 1019805 1020227 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0452 thioredoxin 2; thioredoxin 1019805..1020227 Shewanella frigidimarina NCIMB 400 4278695 YP_749559.1 CDS Sfri_0868 NC_008345.1 1020322 1020768 D KEGG: vch:VCA0425 hypothetical protein; hypothetical protein 1020322..1020768 Shewanella frigidimarina NCIMB 400 4278625 YP_749560.1 CDS Sfri_0869 NC_008345.1 1021085 1021564 D KEGG: ppr:PBPRA1069 hypothetical protein; hypothetical protein 1021085..1021564 Shewanella frigidimarina NCIMB 400 4278626 YP_749561.1 CDS Sfri_0870 NC_008345.1 1022002 1023156 R PFAM: lipase, class 3; KEGG: vvy:VVA0214 predicted lipase; lipase, class 3 complement(1022002..1023156) Shewanella frigidimarina NCIMB 400 4278627 YP_749562.1 CDS Sfri_0871 NC_008345.1 1023185 1023757 R KEGG: ppr:PBPRA1068 hypothetical protein; hypothetical protein complement(1023185..1023757) Shewanella frigidimarina NCIMB 400 4278628 YP_749563.1 CDS metH NC_008345.1 1024225 1027941 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(1024225..1027941) Shewanella frigidimarina NCIMB 400 4278629 YP_749564.1 CDS Sfri_0873 NC_008345.1 1028212 1028955 D PFAM: Phosphoglycerate mutase; KEGG: son:SO1031 alpha-ribazole-5'-phosphate phosphatase, putative; phosphoglycerate mutase 1028212..1028955 Shewanella frigidimarina NCIMB 400 4278630 YP_749565.1 CDS Sfri_0874 NC_008345.1 1029253 1030062 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1033 iron-compound ABC transporter, ATP-binding protein, putative; ABC transporter 1029253..1030062 Shewanella frigidimarina NCIMB 400 4278631 YP_749566.1 CDS Sfri_0875 NC_008345.1 1030055 1031161 D PFAM: transport system permease protein; KEGG: son:SO1034 iron-compound ABC transporter, permease protein; transport system permease protein 1030055..1031161 Shewanella frigidimarina NCIMB 400 4278632 YP_749567.1 CDS cobT NC_008345.1 1031291 1032346 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1031291..1032346 Shewanella frigidimarina NCIMB 400 4278633 YP_749568.1 CDS cobS NC_008345.1 1032356 1033141 D catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1032356..1033141 Shewanella frigidimarina NCIMB 400 4278634 YP_749569.1 CDS Sfri_0878 NC_008345.1 1033141 1033671 D PFAM: cobalbumin biosynthesis enzyme; KEGG: son:SO1037 cobinamide kinase/cobinamide phosphate guanylyltransferase; cobalbumin biosynthesis protein 1033141..1033671 Shewanella frigidimarina NCIMB 400 4278635 YP_749570.1 CDS Sfri_0879 NC_008345.1 1033671 1035242 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1033671..1035242 Shewanella frigidimarina NCIMB 400 4278636 YP_749571.1 CDS Sfri_0880 NC_008345.1 1035239 1035868 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1035239..1035868 Shewanella frigidimarina NCIMB 400 4278637 YP_749572.1 CDS Sfri_0881 NC_008345.1 1035945 1036754 R SMART: extracellular solute-binding protein, family 3; KEGG: hch:HCH_00910 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; extracellular solute-binding protein complement(1035945..1036754) Shewanella frigidimarina NCIMB 400 4278638 YP_749573.1 CDS Sfri_0882 NC_008345.1 1036904 1037260 R PFAM: helix-turn-helix, HxlR type; KEGG: cps:CPS_1319 transcriptional regulator; transcriptional regulator, HxlR family protein complement(1036904..1037260) Shewanella frigidimarina NCIMB 400 4278639 YP_749574.1 CDS Sfri_0883 NC_008345.1 1037382 1038743 D PFAM: aldehyde dehydrogenase; KEGG: cps:CPS_1321 aldehyde dehydrogenase (NAD) family protein; aldehyde dehydrogenase 1037382..1038743 Shewanella frigidimarina NCIMB 400 4278640 YP_749575.1 CDS Sfri_0884 NC_008345.1 1038754 1039533 D SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: cps:CPS_1322 oxidoreductase, 2OG-Fe(II) oxygenase family; prolyl 4-hydroxylase, alpha subunit 1038754..1039533 Shewanella frigidimarina NCIMB 400 4278641 YP_749576.1 CDS Sfri_0885 NC_008345.1 1040133 1040717 D hypothetical protein 1040133..1040717 Shewanella frigidimarina NCIMB 400 4278642 YP_749577.1 CDS Sfri_0886 NC_008345.1 1040904 1042643 R PFAM: pseudouridine synthase; KEGG: vfi:VFA0485 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase complement(1040904..1042643) Shewanella frigidimarina NCIMB 400 4276983 YP_749578.1 CDS Sfri_0887 NC_008345.1 1042814 1043599 R PFAM: beta-lactamase domain protein; KEGG: bce:BC3440 beta-lactamase, type II; Beta-lactamase complement(1042814..1043599) Shewanella frigidimarina NCIMB 400 4276984 YP_749579.1 CDS Sfri_0888 NC_008345.1 1043864 1044247 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppr:PBPRB0453 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(1043864..1044247) Shewanella frigidimarina NCIMB 400 4276985 YP_749580.1 CDS Sfri_0889 NC_008345.1 1044314 1045636 R PFAM: ABC-1 domain protein; KEGG: vpa:VPA1239 putative ABC transporter; hypothetical protein complement(1044314..1045636) Shewanella frigidimarina NCIMB 400 4276986 YP_749581.1 CDS Sfri_0890 NC_008345.1 1045817 1047391 D PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: eli:ELI_00455 TPR domain protein; sulfotransferase 1045817..1047391 Shewanella frigidimarina NCIMB 400 4276987 YP_749582.1 CDS Sfri_0891 NC_008345.1 1047519 1048694 R PFAM: SEC-C motif domain protein; Aspartyl/Asparaginyl beta-hydroxylase; KEGG: cps:CPS_4429 aspartyl/asparaginyl beta-hydroxylase family protein; SecC motif-containing protein complement(1047519..1048694) Shewanella frigidimarina NCIMB 400 4276988 YP_749583.1 CDS Sfri_0892 NC_008345.1 1048794 1049822 R PFAM: sulfotransferase; SEC-C motif domain protein; KEGG: tbd:Tbd_0299 hypothetical protein; SecC motif-containing protein complement(1048794..1049822) Shewanella frigidimarina NCIMB 400 4276989 YP_749584.1 CDS Sfri_0893 NC_008345.1 1049881 1050423 R PFAM: isochorismatase hydrolase; KEGG: son:SO0762 isochorismatase family protein; isochorismatase hydrolase complement(1049881..1050423) Shewanella frigidimarina NCIMB 400 4276990 YP_749585.1 CDS Sfri_0894 NC_008345.1 1050555 1051592 D KEGG: son:SO3711 hypothetical protein; hypothetical protein 1050555..1051592 Shewanella frigidimarina NCIMB 400 4276991 YP_749586.1 CDS Sfri_0895 NC_008345.1 1051732 1052598 D PFAM: periplasmic binding protein; KEGG: son:SO3709 ABC transporter, periplasmic substrate-binding protein, putative; periplasmic binding protein 1051732..1052598 Shewanella frigidimarina NCIMB 400 4276992 YP_749587.1 CDS Sfri_0896 NC_008345.1 1053434 1054522 D KEGG: sec:SC147 hypothetical protein; hypothetical protein 1053434..1054522 Shewanella frigidimarina NCIMB 400 4276993 YP_749588.1 CDS Sfri_0897 NC_008345.1 1055324 1056583 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO3694 HlyD family secretion protein; RND family efflux transporter MFP subunit 1055324..1056583 Shewanella frigidimarina NCIMB 400 4276994 YP_749589.1 CDS Sfri_0898 NC_008345.1 1057023 1057721 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3692 ABC transporter, ATP-binding protein; ABC transporter 1057023..1057721 Shewanella frigidimarina NCIMB 400 4276995 YP_749590.1 CDS Sfri_0899 NC_008345.1 1057732 1059045 D PFAM: protein of unknown function DUF214; KEGG: xcv:XCV3757 ABC transporter permease; hypothetical protein 1057732..1059045 Shewanella frigidimarina NCIMB 400 4276996 YP_749591.1 CDS Sfri_0900 NC_008345.1 1059076 1060284 D PFAM: protein of unknown function DUF214; KEGG: son:SO3690 ABC transporter, permease protein; hypothetical protein 1059076..1060284 Shewanella frigidimarina NCIMB 400 4276997 YP_749592.1 CDS Sfri_0901 NC_008345.1 1060404 1061852 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: son:SO3689 sigma-54 dependent nitrogen response regulator; Fis family two component sigma-54-specific transcriptional regulator 1060404..1061852 Shewanella frigidimarina NCIMB 400 4276998 YP_749593.1 CDS Sfri_0902 NC_008345.1 1061855 1063210 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3688 nitrogen regulation protein NtrY, putative; periplasmic sensor signal transduction histidine kinase 1061855..1063210 Shewanella frigidimarina NCIMB 400 4276999 YP_749594.1 CDS Sfri_0903 NC_008345.1 1063461 1064270 R KEGG: cps:CPS_3405 hypothetical protein; hypothetical protein complement(1063461..1064270) Shewanella frigidimarina NCIMB 400 4278607 YP_749595.1 CDS Sfri_0904 NC_008345.1 1064273 1065211 R PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: cps:CPS_3406 hypothetical protein; hypothetical protein complement(1064273..1065211) Shewanella frigidimarina NCIMB 400 4278608 YP_749596.1 CDS Sfri_0905 NC_008345.1 1065336 1065794 R KEGG: cps:CPS_3407 putative lipoprotein; putative lipoprotein complement(1065336..1065794) Shewanella frigidimarina NCIMB 400 4278609 YP_749597.1 CDS Sfri_0906 NC_008345.1 1066181 1066564 D KEGG: son:SO3708 hypothetical protein; hypothetical protein 1066181..1066564 Shewanella frigidimarina NCIMB 400 4278610 YP_749598.1 CDS Sfri_0907 NC_008345.1 1066679 1066924 R KEGG: son:SO3591 hypothetical protein; hypothetical protein complement(1066679..1066924) Shewanella frigidimarina NCIMB 400 4278611 YP_749599.1 CDS Sfri_0908 NC_008345.1 1067012 1067632 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: vpa:VP2915 hypothetical protein; uracil-DNA glycosylase superfamily protein 1067012..1067632 Shewanella frigidimarina NCIMB 400 4278612 YP_749600.1 CDS Sfri_0909 NC_008345.1 1067675 1068175 R KEGG: son:SO3587 hypothetical protein; hypothetical protein complement(1067675..1068175) Shewanella frigidimarina NCIMB 400 4278613 YP_749601.1 CDS Sfri_0910 NC_008345.1 1068323 1070971 R KEGG: pha:PSHAa2038 uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; DNA polymerase, beta domain protein region; metal-dependent phosphohydrolase, HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase, HD region; UTP-GlnB uridylyltransferase, GlnD complement(1068323..1070971) Shewanella frigidimarina NCIMB 400 4278614 YP_749602.1 CDS Sfri_0911 NC_008345.1 1071053 1071766 D TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; KEGG: cps:CPS_4413 putative ribosomal small subunit pseudouridine synthase A; pseudouridine synthase, Rsu 1071053..1071766 Shewanella frigidimarina NCIMB 400 4278615 YP_749603.1 CDS Sfri_0912 NC_008345.1 1071831 1072787 D PFAM: regulatory protein, LysR; KEGG: son:SO1661 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 1071831..1072787 Shewanella frigidimarina NCIMB 400 4278616 YP_749604.1 CDS Sfri_0913 NC_008345.1 1073125 1075437 D KEGG: son:SO1659 decaheme cytochrome c; decaheme cytochrome c 1073125..1075437 Shewanella frigidimarina NCIMB 400 4278617 YP_749605.1 CDS Sfri_0914 NC_008345.1 1076067 1077602 R PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1505 transporter, putative; major facilitator transporter complement(1076067..1077602) Shewanella frigidimarina NCIMB 400 4278618 YP_749606.1 CDS Sfri_0915 NC_008345.1 1077885 1078223 R PFAM: SEC-C motif domain protein; KEGG: ppr:PBPRA1441 hypothetical protein; SecC motif-containing protein complement(1077885..1078223) Shewanella frigidimarina NCIMB 400 4278619 YP_749607.1 CDS valS NC_008345.1 1078439 1081345 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1078439..1081345) Shewanella frigidimarina NCIMB 400 4278620 YP_749608.1 CDS Sfri_0917 NC_008345.1 1081379 1081828 R PFAM: DNA polymerase III chi subunit, HolC; KEGG: son:SO3423 DNA polymerase III, chi subunit; DNA polymerase III chi subunit, HolC complement(1081379..1081828) Shewanella frigidimarina NCIMB 400 4278621 YP_749609.1 CDS Sfri_0918 NC_008345.1 1081914 1082285 R KEGG: ilo:IL0309 hypothetical protein; hypothetical protein complement(1081914..1082285) Shewanella frigidimarina NCIMB 400 4278622 YP_749610.1 CDS Sfri_0919 NC_008345.1 1082298 1083221 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pfo:Pfl_4320 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(1082298..1083221) Shewanella frigidimarina NCIMB 400 4278623 YP_749611.1 CDS Sfri_0920 NC_008345.1 1083338 1084093 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hch:HCH_02025 short-chain alcohol dehydrogenase-like protein; short-chain dehydrogenase/reductase SDR 1083338..1084093 Shewanella frigidimarina NCIMB 400 4278624 YP_749612.1 CDS Sfri_0921 NC_008345.1 1084130 1084912 R SMART: extracellular solute-binding protein, family 3; KEGG: bba:Bd2855 putative ABC amino acid transporter solute binding protein; extracellular solute-binding protein complement(1084130..1084912) Shewanella frigidimarina NCIMB 400 4277334 YP_749613.1 CDS Sfri_0922 NC_008345.1 1085101 1086384 R uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC complement(1085101..1086384) Shewanella frigidimarina NCIMB 400 4277335 YP_749614.1 CDS Sfri_0923 NC_008345.1 1086588 1087490 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2374 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator 1086588..1087490 Shewanella frigidimarina NCIMB 400 4277336 YP_749615.1 CDS Sfri_0924 NC_008345.1 1087601 1089109 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1087601..1089109) Shewanella frigidimarina NCIMB 400 4277337 YP_749616.1 CDS Sfri_0925 NC_008345.1 1089382 1090494 D PFAM: permease YjgP/YjgQ family protein; KEGG: son:SO1369 hypothetical protein; YjgP/YjgQ family permease 1089382..1090494 Shewanella frigidimarina NCIMB 400 4277338 YP_749617.1 CDS Sfri_0926 NC_008345.1 1090491 1091549 D PFAM: permease YjgP/YjgQ family protein; KEGG: son:SO1370 hypothetical protein; YjgP/YjgQ family permease 1090491..1091549 Shewanella frigidimarina NCIMB 400 4277339 YP_749618.1 CDS Sfri_0927 NC_008345.1 1091677 1092186 R PFAM: RDD domain containing protein; KEGG: son:SO1371 hypothetical protein; RDD domain-containing protein complement(1091677..1092186) Shewanella frigidimarina NCIMB 400 4277340 YP_749619.1 CDS Sfri_0928 NC_008345.1 1092214 1092468 R KEGG: son:SO1372 hypothetical protein; hypothetical protein complement(1092214..1092468) Shewanella frigidimarina NCIMB 400 4277341 YP_749620.1 CDS Sfri_0929 NC_008345.1 1092484 1092834 R PFAM: protein of unknown function DUF486; KEGG: son:SO1373 hypothetical protein; hypothetical protein complement(1092484..1092834) Shewanella frigidimarina NCIMB 400 4277342 YP_749621.1 CDS Sfri_0930 NC_008345.1 1092845 1093339 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1374 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(1092845..1093339) Shewanella frigidimarina NCIMB 400 4277343 YP_749622.1 CDS Sfri_0931 NC_008345.1 1093456 1094043 D KEGG: eli:ELI_10435 hypothetical protein; hypothetical protein 1093456..1094043 Shewanella frigidimarina NCIMB 400 4277344 YP_749623.1 CDS Sfri_0932 NC_008345.1 1094062 1094805 R KEGG: hch:HCH_04001 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; hypothetical protein complement(1094062..1094805) Shewanella frigidimarina NCIMB 400 4277345 YP_749624.1 CDS Sfri_0933 NC_008345.1 1094857 1095501 R KEGG: son:SO1380 hypothetical protein; hypothetical protein complement(1094857..1095501) Shewanella frigidimarina NCIMB 400 4277346 YP_749625.1 CDS Sfri_0934 NC_008345.1 1095658 1096236 R KEGG: son:SO3597 hypothetical protein; hypothetical protein complement(1095658..1096236) Shewanella frigidimarina NCIMB 400 4277347 YP_749626.1 CDS Sfri_0935 NC_008345.1 1096427 1096741 D PFAM: protein of unknown function DUF1289; KEGG: son:SO3596 hypothetical protein; hypothetical protein 1096427..1096741 Shewanella frigidimarina NCIMB 400 4277348 YP_749627.1 CDS Sfri_0936 NC_008345.1 1096751 1097371 R PFAM: regulatory protein, TetR; KEGG: son:SO3684 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein complement(1096751..1097371) Shewanella frigidimarina NCIMB 400 4277349 YP_749628.1 CDS Sfri_0937 NC_008345.1 1097501 1098922 R PFAM: aldehyde dehydrogenase; KEGG: son:SO3683 coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase complement(1097501..1098922) Shewanella frigidimarina NCIMB 400 4277350 YP_749629.1 CDS Sfri_0938 NC_008345.1 1099180 1099611 D PFAM: UspA domain protein; KEGG: son:SO3681 universal stress protein family; UspA domain-containing protein 1099180..1099611 Shewanella frigidimarina NCIMB 400 4277666 YP_749630.1 CDS Sfri_0939 NC_008345.1 1099651 1100211 R PFAM: protein of unknown function DUF924; KEGG: ilo:IL1577 hypothetical protein; hypothetical protein complement(1099651..1100211) Shewanella frigidimarina NCIMB 400 4277667 YP_749631.1 CDS Sfri_0940 NC_008345.1 1100216 1101841 R PFAM: membrane-flanked domain; KEGG: sde:Sde_3047 serine/threonine protein kinase; membrane-flanked domain-containing protein complement(1100216..1101841) Shewanella frigidimarina NCIMB 400 4277668 YP_749632.1 CDS Sfri_0941 NC_008345.1 1101888 1102616 R PFAM: membrane-flanked domain; KEGG: sde:Sde_3048 hypothetical protein; membrane-flanked domain-containing protein complement(1101888..1102616) Shewanella frigidimarina NCIMB 400 4277669 YP_749633.1 CDS Sfri_0942 NC_008345.1 1102870 1103196 D KEGG: son:SO3679 hypothetical protein; hypothetical protein 1102870..1103196 Shewanella frigidimarina NCIMB 400 4277670 YP_749634.1 CDS Sfri_0943 NC_008345.1 1103238 1104206 D PFAM: Mg2 transporter protein, CorA family protein; KEGG: bsu:BG12913 similar to divalent cation transport protein; Mg2 transporter protein, CorA family protein 1103238..1104206 Shewanella frigidimarina NCIMB 400 4277671 YP_749635.1 CDS Sfri_0944 NC_008345.1 1104237 1104896 D PFAM: 2OG-Fe(II) oxygenase; KEGG: son:SO1098 hypothetical alkylated DNA repair protein; 2OG-Fe(II) oxygenase 1104237..1104896 Shewanella frigidimarina NCIMB 400 4277672 YP_749636.1 CDS Sfri_0945 NC_008345.1 1105169 1105468 D PFAM: BolA family protein; KEGG: son:SO1099 bolA protein; BolA family protein 1105169..1105468 Shewanella frigidimarina NCIMB 400 4277673 YP_749637.1 CDS Sfri_0946 NC_008345.1 1105633 1106757 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: son:SO1100 extracellular solute-binding protein, family 7; TRAP dicarboxylate transporter- DctP subunit 1105633..1106757 Shewanella frigidimarina NCIMB 400 4277674 YP_749638.1 CDS Sfri_0947 NC_008345.1 1106845 1107354 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1106845..1107354 Shewanella frigidimarina NCIMB 400 4277675 YP_749639.1 CDS Sfri_0948 NC_008345.1 1107557 1109632 D KEGG: son:SO1102 TonB-dependent receptor C-terminal region domain lipoprotein; TonB-dependent receptor domain-containing protein 1107557..1109632 Shewanella frigidimarina NCIMB 400 4277676 YP_749640.1 CDS Sfri_0949 NC_008345.1 1110090 1111424 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1110090..1111424 Shewanella frigidimarina NCIMB 400 4277677 YP_749641.1 CDS Sfri_0950 NC_008345.1 1111424 1112623 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1111424..1112623 Shewanella frigidimarina NCIMB 400 4277678 YP_749642.1 CDS Sfri_0951 NC_008345.1 1112616 1113401 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1112616..1113401 Shewanella frigidimarina NCIMB 400 4277679 YP_749643.1 CDS Sfri_0952 NC_008345.1 1113401 1114033 D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1113401..1114033 Shewanella frigidimarina NCIMB 400 4277680 YP_749644.1 CDS Sfri_0953 NC_008345.1 1114039 1114647 D Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1114039..1114647 Shewanella frigidimarina NCIMB 400 4277681 YP_749645.1 CDS Sfri_0954 NC_008345.1 1114694 1115941 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1114694..1115941 Shewanella frigidimarina NCIMB 400 4277682 YP_749646.1 CDS Sfri_0955 NC_008345.1 1116063 1117076 D PFAM: ApbE family lipoprotein; KEGG: son:SO1109 thiamin biosynthesis lipoprotein ApbE; ApbE family lipoprotein 1116063..1117076 Shewanella frigidimarina NCIMB 400 4277683 YP_749647.1 CDS Sfri_0956 NC_008345.1 1117162 1117386 D PFAM: protein of unknown function DUF539; KEGG: son:SO1110 hypothetical protein; hypothetical protein 1117162..1117386 Shewanella frigidimarina NCIMB 400 4277754 YP_749648.1 CDS Sfri_0957 NC_008345.1 1117620 1118090 D TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: son:SO1111 bacterioferritin subunit 2; bacterioferritin 1117620..1118090 Shewanella frigidimarina NCIMB 400 4277755 YP_749649.1 CDS Sfri_0958 NC_008345.1 1118103 1118570 D TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: son:SO1112 bacterioferritin subunit 1; bacterioferritin 1118103..1118570 Shewanella frigidimarina NCIMB 400 4277756 YP_749650.1 CDS Sfri_0959 NC_008345.1 1118895 1119368 D KEGG: ppr:PBPRA2528 hypothetical protein; hypothetical protein 1118895..1119368 Shewanella frigidimarina NCIMB 400 4277757 YP_749651.1 CDS Sfri_0960 NC_008345.1 1119370 1119888 D PFAM: Ankyrin; KEGG: ppr:PBPRA2368 hypothetical protein; ankyrin 1119370..1119888 Shewanella frigidimarina NCIMB 400 4277758 YP_749652.1 CDS Sfri_0961 NC_008345.1 1120087 1121166 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1120087..1121166 Shewanella frigidimarina NCIMB 400 4277759 YP_749653.1 CDS Sfri_0962 NC_008345.1 1121276 1122739 R KEGG: son:SO1115 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase complement(1121276..1122739) Shewanella frigidimarina NCIMB 400 4277760 YP_749654.1 CDS Sfri_0963 NC_008345.1 1122922 1124460 D PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: son:SO1117 cytosol aminopeptidase, putative; peptidase M17, leucyl aminopeptidase domain-containing protein 1122922..1124460 Shewanella frigidimarina NCIMB 400 4277761 YP_749655.1 CDS Sfri_0964 NC_008345.1 1124724 1124903 D hypothetical protein 1124724..1124903 Shewanella frigidimarina NCIMB 400 4277762 YP_749656.1 CDS Sfri_0965 NC_008345.1 1125346 1126635 D PFAM: Xanthine/uracil/vitamin C permease; KEGG: son:SO1120 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 1125346..1126635 Shewanella frigidimarina NCIMB 400 4277763 YP_749657.1 CDS Sfri_0966 NC_008345.1 1126919 1128028 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1126919..1128028 Shewanella frigidimarina NCIMB 400 4277764 YP_749658.1 CDS proA NC_008345.1 1128039 1129313 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1128039..1129313 Shewanella frigidimarina NCIMB 400 4277765 YP_749659.1 CDS Sfri_0968 NC_008345.1 1129396 1129731 R KEGG: son:SO1123 hypothetical protein; hypothetical protein complement(1129396..1129731) Shewanella frigidimarina NCIMB 400 4277766 YP_749660.1 CDS dnaK NC_008345.1 1130511 1132427 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1130511..1132427 Shewanella frigidimarina NCIMB 400 4277767 YP_749661.1 CDS Sfri_0970 NC_008345.1 1132539 1133669 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1132539..1133669 Shewanella frigidimarina NCIMB 400 4277768 YP_749662.1 CDS Sfri_0971 NC_008345.1 1133772 1135004 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1136 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 1133772..1135004 Shewanella frigidimarina NCIMB 400 4277769 YP_749663.1 CDS Sfri_0972 NC_008345.1 1135127 1135933 D PFAM: peptidase M48, Ste24p; KEGG: son:SO1137 hypothetical protein; peptidase M48, Ste24p 1135127..1135933 Shewanella frigidimarina NCIMB 400 4277770 YP_749664.1 CDS Sfri_0973 NC_008345.1 1136013 1136630 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1139 peptidyl-prolyl cis-trans isomerase FklB; peptidylprolyl isomerase, FKBP-type 1136013..1136630 Shewanella frigidimarina NCIMB 400 4278190 YP_749665.1 CDS Sfri_0974 NC_008345.1 1136714 1137526 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1136714..1137526 Shewanella frigidimarina NCIMB 400 4278191 YP_749666.1 CDS Sfri_0975 NC_008345.1 1137713 1138858 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1137713..1138858 Shewanella frigidimarina NCIMB 400 4278192 YP_749667.1 CDS carB NC_008345.1 1138882 1142103 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1138882..1142103 Shewanella frigidimarina NCIMB 400 4278193 YP_749668.1 CDS Sfri_0977 NC_008345.1 1142334 1142810 D TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO1191 transcription elongation factor GreA; transcription elongation factor GreA 1142334..1142810 Shewanella frigidimarina NCIMB 400 4278194 YP_749669.1 CDS Sfri_0978 NC_008345.1 1143257 1143892 D KEGG: ppr:PBPRB0499 hypothetical protein; hypothetical protein 1143257..1143892 Shewanella frigidimarina NCIMB 400 4278195 YP_749670.1 CDS secD NC_008345.1 1144029 1145840 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1144029..1145840 Shewanella frigidimarina NCIMB 400 4278196 YP_749671.1 CDS secF NC_008345.1 1145845 1146768 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1145845..1146768 Shewanella frigidimarina NCIMB 400 4278197 YP_749672.1 CDS Sfri_0981 NC_008345.1 1146836 1147135 R PFAM: protein of unknown function UPF0044; KEGG: son:SO1195 putative RNA-binding protein containing KH domain; hypothetical protein complement(1146836..1147135) Shewanella frigidimarina NCIMB 400 4278198 YP_749673.1 CDS rrmJ NC_008345.1 1147226 1147855 D Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 1147226..1147855 Shewanella frigidimarina NCIMB 400 4278199 YP_749674.1 CDS Sfri_0983 NC_008345.1 1147902 1149875 D KEGG: son:SO1197 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 1147902..1149875 Shewanella frigidimarina NCIMB 400 4278200 YP_749675.1 CDS Sfri_0984 NC_008345.1 1149915 1150778 D KEGG: son:SO1198 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 1149915..1150778 Shewanella frigidimarina NCIMB 400 4278201 YP_749676.1 CDS glmM NC_008345.1 1150833 1152170 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1150833..1152170 Shewanella frigidimarina NCIMB 400 4278202 YP_749677.1 CDS Sfri_0986 NC_008345.1 1152310 1153092 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1152310..1153092 Shewanella frigidimarina NCIMB 400 4278203 YP_749678.1 CDS secG NC_008345.1 1153097 1153432 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: son:SO1201 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 1153097..1153432 Shewanella frigidimarina NCIMB 400 4278204 YP_749679.1 CDS Sfri_0988 NC_008345.1 1153817 1154314 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1153817..1154314 Shewanella frigidimarina NCIMB 400 4278205 YP_749680.1 CDS nusA NC_008345.1 1154346 1155845 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1154346..1155845 Shewanella frigidimarina NCIMB 400 4278206 YP_749681.1 CDS infB NC_008345.1 1155871 1158516 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1155871..1158516 Shewanella frigidimarina NCIMB 400 4278207 YP_749682.1 CDS rbfA NC_008345.1 1158583 1159014 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1158583..1159014 Shewanella frigidimarina NCIMB 400 4278365 YP_749683.1 CDS truB NC_008345.1 1159014 1159967 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1159014..1159967 Shewanella frigidimarina NCIMB 400 4278366 YP_749684.1 CDS rpsO NC_008345.1 1160109 1160378 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1160109..1160378 Shewanella frigidimarina NCIMB 400 4278367 YP_749685.1 CDS Sfri_0994 NC_008345.1 1161509 1163545 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1208 GGDEF domain protein; diguanylate cyclase/phosphodiesterase complement(1161509..1163545) Shewanella frigidimarina NCIMB 400 4278368 YP_749686.1 CDS Sfri_0995 NC_008345.1 1163942 1166038 D KEGG: son:SO1209 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 1163942..1166038 Shewanella frigidimarina NCIMB 400 4278369 YP_749687.1 CDS Sfri_0996 NC_008345.1 1166185 1167096 D lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 1166185..1167096 Shewanella frigidimarina NCIMB 400 4278370 YP_749688.1 CDS prfC NC_008345.1 1167173 1168753 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1167173..1168753 Shewanella frigidimarina NCIMB 400 4278371 YP_749689.1 CDS Sfri_0998 NC_008345.1 1168835 1169035 D hypothetical protein 1168835..1169035 Shewanella frigidimarina NCIMB 400 4278372 YP_749690.1 CDS Sfri_0999 NC_008345.1 1169028 1169789 D PFAM: TatD-related deoxyribonuclease; KEGG: son:SO1213 hydrolase, TatD family; TatD-related deoxyribonuclease 1169028..1169789 Shewanella frigidimarina NCIMB 400 4278373 YP_749691.1 CDS Sfri_1000 NC_008345.1 1169967 1171229 D TIGRFAM: nucleoside transporter; PFAM: Na dependent nucleoside transporter; nucleoside recognition domain protein; Na dependent nucleoside transporter domain protein; KEGG: son:SO1214 NupC family protein; nucleoside transporter 1169967..1171229 Shewanella frigidimarina NCIMB 400 4278374 YP_749692.1 CDS Sfri_1001 NC_008345.1 1171592 1172431 D PFAM: nucleoside-specific channel-forming protein, Tsx; KEGG: son:SO1215 outer membrane protein OmpK, putative; nucleoside-specific channel-forming protein, Tsx 1171592..1172431 Shewanella frigidimarina NCIMB 400 4278375 YP_749693.1 CDS Sfri_1002 NC_008345.1 1172811 1173584 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1172811..1173584 Shewanella frigidimarina NCIMB 400 4278376 YP_749694.1 CDS deoA NC_008345.1 1173712 1175043 D Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 1173712..1175043 Shewanella frigidimarina NCIMB 400 4278377 YP_749695.1 CDS Sfri_1004 NC_008345.1 1175056 1176273 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1175056..1176273 Shewanella frigidimarina NCIMB 400 4278378 YP_749696.1 CDS deoD NC_008345.1 1176375 1177085 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1176375..1177085 Shewanella frigidimarina NCIMB 400 4278379 YP_749697.1 CDS Sfri_1006 NC_008345.1 1177161 1177853 R KEGG: son:SO1222 membrane protein; membrane protein complement(1177161..1177853) Shewanella frigidimarina NCIMB 400 4278380 YP_749698.1 CDS Sfri_1007 NC_008345.1 1178016 1179002 D KEGG: son:SO1223 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB 1178016..1179002 Shewanella frigidimarina NCIMB 400 4278381 YP_749699.1 CDS Sfri_1008 NC_008345.1 1179121 1180029 D KEGG: son:SO1224 hypothetical protein; hypothetical protein 1179121..1180029 Shewanella frigidimarina NCIMB 400 4277123 YP_749700.1 CDS Sfri_1009 NC_008345.1 1180179 1182563 R PFAM: type IV pilus assembly PilZ; KEGG: son:SO1225 hypothetical protein; type IV pilus assembly PilZ complement(1180179..1182563) Shewanella frigidimarina NCIMB 400 4277124 YP_749701.1 CDS Sfri_1010 NC_008345.1 1182995 1184374 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1182995..1184374 Shewanella frigidimarina NCIMB 400 4277125 YP_749702.1 CDS Sfri_1011 NC_008345.1 1184464 1184829 R PFAM: type IV pilus assembly PilZ; KEGG: son:SO1227 hypothetical protein; type IV pilus assembly PilZ complement(1184464..1184829) Shewanella frigidimarina NCIMB 400 4277126 YP_749703.1 CDS Sfri_1012 NC_008345.1 1184987 1186339 R PFAM: nucleoside recognition domain protein; KEGG: son:SO1245 hypothetical protein; nucleoside recognition domain-containing protein complement(1184987..1186339) Shewanella frigidimarina NCIMB 400 4277127 YP_749704.1 CDS Sfri_1013 NC_008345.1 1186708 1187649 R PFAM: peptidase U32; KEGG: son:SO1248 hypothetical peptidase; peptidase U32 complement(1186708..1187649) Shewanella frigidimarina NCIMB 400 4277128 YP_749705.1 CDS Sfri_1014 NC_008345.1 1187659 1188660 R PFAM: peptidase U32; KEGG: son:SO1249 peptidase, U32 family; peptidase U32 complement(1187659..1188660) Shewanella frigidimarina NCIMB 400 4277129 YP_749706.1 CDS Sfri_1015 NC_008345.1 1188801 1189298 D KEGG: son:SO1250 hypothetical protein; hypothetical protein 1188801..1189298 Shewanella frigidimarina NCIMB 400 4277130 YP_749707.1 CDS Sfri_1016 NC_008345.1 1189402 1189569 R KEGG: son:SO1251 ferredoxin, 4Fe-4S; ferredoxin, 4Fe-4S complement(1189402..1189569) Shewanella frigidimarina NCIMB 400 4277131 YP_749708.1 CDS Sfri_1017 NC_008345.1 1189733 1191193 R KEGG: rfr:Rfer_1881 Ig-like, group 2; Ig-like, group 2 complement(1189733..1191193) Shewanella frigidimarina NCIMB 400 4277132 YP_749709.1 CDS Sfri_1018 NC_008345.1 1191486 1194164 R PFAM: Ig domain protein, group 2 domain protein; KEGG: lil:LA3075 surface protein Lk90-like protein; Ig domain-containing protein complement(1191486..1194164) Shewanella frigidimarina NCIMB 400 4277133 YP_749710.1 CDS Sfri_1019 NC_008345.1 1194719 1197328 D KEGG: rfr:Rfer_3548 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 1194719..1197328 Shewanella frigidimarina NCIMB 400 4277134 YP_749711.1 CDS Sfri_1020 NC_008345.1 1197328 1198878 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: gme:Gmet_2223 transcriptional regulator, NifA subfamily, fis family; Fis family two component sigma-54-specific transcriptional regulator 1197328..1198878 Shewanella frigidimarina NCIMB 400 4277135 YP_749712.1 CDS Sfri_1021 NC_008345.1 1199071 1199328 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1251 ferredoxin, 4Fe-4S; 4Fe-4S ferredoxin complement(1199071..1199328) Shewanella frigidimarina NCIMB 400 4277136 YP_749713.1 CDS Sfri_1022 NC_008345.1 1199341 1200705 R PFAM: peptidase U32; KEGG: son:SO1252 peptidase, U32 family; peptidase U32 complement(1199341..1200705) Shewanella frigidimarina NCIMB 400 4277137 YP_749714.1 CDS Sfri_1023 NC_008345.1 1200953 1201795 D KEGG: son:SO1254 hypothetical protein; putative signal transduction protein 1200953..1201795 Shewanella frigidimarina NCIMB 400 4277138 YP_749715.1 CDS Sfri_1024 NC_008345.1 1201920 1203422 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO1255 cyclic nucleotide phosphodiesterase, putative; diguanylate cyclase/phosphodiesterase 1201920..1203422 Shewanella frigidimarina NCIMB 400 4277139 YP_749716.1 CDS Sfri_1025 NC_008345.1 1203488 1203919 R PFAM: thioesterase superfamily protein; KEGG: son:SO1256 hypothetical 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein complement(1203488..1203919) Shewanella frigidimarina NCIMB 400 4277140 YP_749717.1 CDS Sfri_1026 NC_008345.1 1203954 1204766 R KEGG: son:SO1260 hypothetical amino acid ABC transporter; amino acid ABC transporter complement(1203954..1204766) Shewanella frigidimarina NCIMB 400 4277840 YP_749718.1 CDS Sfri_1027 NC_008345.1 1205109 1208939 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: bca:BCE5479 sensory box/GGDEF family protein; diguanylate cyclase/phosphodiesterase complement(1205109..1208939) Shewanella frigidimarina NCIMB 400 4277841 YP_749719.1 CDS Sfri_1028 NC_008345.1 1209463 1209936 R PFAM: protein of unknown function DUF88; KEGG: son:SO3490 hypothetical protein; hypothetical protein complement(1209463..1209936) Shewanella frigidimarina NCIMB 400 4277842 YP_749720.1 CDS Sfri_1029 NC_008345.1 1209954 1213058 R PFAM: acriflavin resistance protein; KEGG: son:SO3484 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(1209954..1213058) Shewanella frigidimarina NCIMB 400 4277843 YP_749721.1 CDS Sfri_1030 NC_008345.1 1213058 1214155 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3483 HlyD family secretion protein; RND family efflux transporter MFP subunit complement(1213058..1214155) Shewanella frigidimarina NCIMB 400 4277844 YP_749722.1 CDS Sfri_1031 NC_008345.1 1214419 1215654 R KEGG: ppr:PBPRA1873 hypothetical protein; hypothetical protein complement(1214419..1215654) Shewanella frigidimarina NCIMB 400 4277845 YP_749723.1 CDS Sfri_1032 NC_008345.1 1215943 1217610 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(1215943..1217610) Shewanella frigidimarina NCIMB 400 4277846 YP_749724.1 CDS glyA NC_008345.1 1217872 1219125 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1217872..1219125 Shewanella frigidimarina NCIMB 400 4277847 YP_749725.1 CDS nrdR NC_008345.1 1219240 1219689 D TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone domain protein; KEGG: son:SO3470 ATP-cone domain protein; transcriptional regulator NrdR 1219240..1219689 Shewanella frigidimarina NCIMB 400 4277848 YP_749726.1 CDS Sfri_1035 NC_008345.1 1219754 1220899 D KEGG: son:SO3469 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 1219754..1220899 Shewanella frigidimarina NCIMB 400 4277849 YP_749727.1 CDS Sfri_1036 NC_008345.1 1220964 1221623 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1220964..1221623 Shewanella frigidimarina NCIMB 400 4277850 YP_749728.1 CDS Sfri_1037 NC_008345.1 1221748 1222851 D PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: son:SO3467 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1221748..1222851 Shewanella frigidimarina NCIMB 400 4277851 YP_749729.1 CDS ribH NC_008345.1 1222975 1223451 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1222975..1223451 Shewanella frigidimarina NCIMB 400 4277852 YP_749730.1 CDS nusB NC_008345.1 1223465 1223869 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1223465..1223869 Shewanella frigidimarina NCIMB 400 4277853 YP_749731.1 CDS Sfri_1040 NC_008345.1 1223957 1224913 D KEGG: son:SO3464 thiamin-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 1223957..1224913 Shewanella frigidimarina NCIMB 400 4277854 YP_749732.1 CDS Sfri_1041 NC_008345.1 1224924 1225415 D PFAM: phosphatidylglycerophosphatase A; KEGG: son:SO3463 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase 1224924..1225415 Shewanella frigidimarina NCIMB 400 4277855 YP_749733.1 CDS Sfri_1042 NC_008345.1 1225547 1226689 R KEGG: son:SO2460 hypothetical protein; hypothetical protein complement(1225547..1226689) Shewanella frigidimarina NCIMB 400 4277856 YP_749734.1 CDS Sfri_1043 NC_008345.1 1226761 1228419 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: son:SO3462 DNA repair protein RecN; recombination and repair protein complement(1226761..1228419) Shewanella frigidimarina NCIMB 400 4278208 YP_749735.1 CDS Sfri_1044 NC_008345.1 1228548 1229516 R PFAM: Auxin Efflux Carrier; KEGG: son:SO3461 transporter, putative; auxin efflux carrier complement(1228548..1229516) Shewanella frigidimarina NCIMB 400 4278209 YP_749736.1 CDS Sfri_1045 NC_008345.1 1229605 1229805 R KEGG: son:SO3459 hypothetical protein; hypothetical protein complement(1229605..1229805) Shewanella frigidimarina NCIMB 400 4278210 YP_749737.1 CDS Sfri_1046 NC_008345.1 1229890 1230495 R PFAM: protein of unknown function DUF416; KEGG: son:SO3458 hypothetical protein; hypothetical protein complement(1229890..1230495) Shewanella frigidimarina NCIMB 400 4278211 YP_749738.1 CDS Sfri_1047 NC_008345.1 1230476 1233334 R part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA complement(1230476..1233334) Shewanella frigidimarina NCIMB 400 4278212 YP_749739.1 CDS rumA NC_008345.1 1233437 1234804 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1233437..1234804 Shewanella frigidimarina NCIMB 400 4278213 YP_749740.1 CDS Sfri_1049 NC_008345.1 1234926 1237196 D KEGG: son:SO3455 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1234926..1237196 Shewanella frigidimarina NCIMB 400 4278214 YP_749741.1 CDS mazG NC_008345.1 1237288 1238109 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1237288..1238109 Shewanella frigidimarina NCIMB 400 4278215 YP_749742.1 CDS pyrG NC_008345.1 1238224 1239861 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1238224..1239861 Shewanella frigidimarina NCIMB 400 4278216 YP_749743.1 CDS eno NC_008345.1 1240136 1241437 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1240136..1241437 Shewanella frigidimarina NCIMB 400 4278217 YP_749744.1 CDS Sfri_1053 NC_008345.1 1241538 1241840 D PFAM: Septum formation initiator; KEGG: son:SO3439 cell division protein FtsB; septum formation initiator 1241538..1241840 Shewanella frigidimarina NCIMB 400 4278218 YP_749745.1 CDS ispD NC_008345.1 1241903 1242601 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1241903..1242601 Shewanella frigidimarina NCIMB 400 4278219 YP_749746.1 CDS ispF NC_008345.1 1242663 1243142 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1242663..1243142 Shewanella frigidimarina NCIMB 400 4278220 YP_749747.1 CDS Sfri_1056 NC_008345.1 1243170 1244243 D PFAM: tRNA pseudouridine synthase D, TruD; KEGG: son:SO3436 tRNA pseudouridine synthase D; pseudouridylate synthase 1243170..1244243 Shewanella frigidimarina NCIMB 400 4278221 YP_749748.1 CDS surE NC_008345.1 1244247 1244996 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1244247..1244996 Shewanella frigidimarina NCIMB 400 4278222 YP_749749.1 CDS Sfri_1058 NC_008345.1 1244993 1245628 D KEGG: son:SO3434 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1244993..1245628 Shewanella frigidimarina NCIMB 400 4278223 YP_749750.1 CDS Sfri_1059 NC_008345.1 1245732 1246661 D PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: son:SO3433 lipoprotein NlpD; peptidase M23B 1245732..1246661 Shewanella frigidimarina NCIMB 400 4278224 YP_749751.1 CDS Sfri_1060 NC_008345.1 1246740 1247711 D TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: son:SO3432 RNA polymerase sigma-38 factor; RNA polymerase subunit sigma 28 1246740..1247711 Shewanella frigidimarina NCIMB 400 4278225 YP_749752.1 CDS Sfri_1061 NC_008345.1 1248096 1250681 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1248096..1250681) Shewanella frigidimarina NCIMB 400 4277823 YP_749753.1 CDS recA NC_008345.1 1250967 1252031 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1250967..1252031 Shewanella frigidimarina NCIMB 400 4277824 YP_749754.1 CDS alaS NC_008345.1 1252831 1255455 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1252831..1255455 Shewanella frigidimarina NCIMB 400 4277825 YP_749755.1 CDS Sfri_1064 NC_008345.1 1255913 1256110 D affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1255913..1256110 Shewanella frigidimarina NCIMB 400 4277826 YP_749756.1 CDS Sfri_1065 NC_008345.1 1258384 1258626 D TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: vvy:VV2800 oxaloacetate decarboxylase, gamma subunit; sodium pump decarboxylase subunit gamma 1258384..1258626 Shewanella frigidimarina NCIMB 400 4277827 YP_749757.1 CDS Sfri_1066 NC_008345.1 1258640 1260418 D catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 1258640..1260418 Shewanella frigidimarina NCIMB 400 4277828 YP_749758.1 CDS Sfri_1067 NC_008345.1 1260428 1261558 D KEGG: vpa:VP2543 oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; sodium ion-translocating decarboxylase subunit beta 1260428..1261558 Shewanella frigidimarina NCIMB 400 4277829 YP_749759.1 CDS Sfri_1068 NC_008345.1 1261894 1263165 D KEGG: cps:CPS_3313 putative lipoprotein; putative lipoprotein 1261894..1263165 Shewanella frigidimarina NCIMB 400 4277830 YP_749760.1 CDS Sfri_1069 NC_008345.1 1263247 1264497 R PFAM: sodium:dicarboxylate symporter; KEGG: son:SO3562 proton/glutamate symporter, putative; sodium:dicarboxylate symporter complement(1263247..1264497) Shewanella frigidimarina NCIMB 400 4277831 YP_749761.1 CDS Sfri_1070 NC_008345.1 1265066 1265494 D KEGG: son:SO3561 hypothetical protein; hypothetical protein 1265066..1265494 Shewanella frigidimarina NCIMB 400 4277832 YP_749762.1 CDS Sfri_1071 NC_008345.1 1265573 1268404 D PFAM: peptidase M16 domain protein; KEGG: son:SO3560 peptidase, M16 family; peptidase M16 domain-containing protein 1265573..1268404 Shewanella frigidimarina NCIMB 400 4277833 YP_749763.1 CDS Sfri_1072 NC_008345.1 1268748 1270367 D involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 1268748..1270367 Shewanella frigidimarina NCIMB 400 4277834 YP_749764.1 CDS Sfri_1073 NC_008345.1 1270370 1270804 D KEGG: son:SO3558 hypothetical protein; hypothetical protein 1270370..1270804 Shewanella frigidimarina NCIMB 400 4277835 YP_749765.1 CDS Sfri_1074 NC_008345.1 1270992 1271609 D KEGG: son:SO3557 hypothetical protein; hypothetical protein 1270992..1271609 Shewanella frigidimarina NCIMB 400 4277836 YP_749766.1 CDS Sfri_1075 NC_008345.1 1271876 1272958 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1271876..1272958) Shewanella frigidimarina NCIMB 400 4277837 YP_749767.1 CDS Sfri_1076 NC_008345.1 1272958 1273449 R KEGG: son:SO3554 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(1272958..1273449) Shewanella frigidimarina NCIMB 400 4277838 YP_749768.1 CDS Sfri_1077 NC_008345.1 1273755 1275593 D PFAM: von Willebrand factor, type A; KEGG: son:SO3552 von Willebrand factor type A domain protein; von Willebrand factor, type A 1273755..1275593 Shewanella frigidimarina NCIMB 400 4277839 YP_749769.1 CDS Sfri_1078 NC_008345.1 1275594 1276232 D PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO3551 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1275594..1276232 Shewanella frigidimarina NCIMB 400 4277612 YP_749770.1 CDS Sfri_1079 NC_008345.1 1276229 1277077 D KEGG: son:SO3550 hypothetical protein; hypothetical protein 1276229..1277077 Shewanella frigidimarina NCIMB 400 4277613 YP_749771.1 CDS Sfri_1080 NC_008345.1 1277280 1280564 D PFAM: peptidase S41; WD40 domain protein beta Propeller; KEGG: son:SO3411 protease, putative; peptidase S41 1277280..1280564 Shewanella frigidimarina NCIMB 400 4277614 YP_749772.1 CDS Sfri_1081 NC_008345.1 1280681 1281118 R PFAM: OsmC family protein; KEGG: son:SO3409 OsmC/Ohr family protein; OsmC family protein complement(1280681..1281118) Shewanella frigidimarina NCIMB 400 4277615 YP_749773.1 CDS Sfri_1082 NC_008345.1 1281394 1281669 D hypothetical protein 1281394..1281669 Shewanella frigidimarina NCIMB 400 4277616 YP_749774.1 CDS Sfri_1083 NC_008345.1 1281773 1282423 R PFAM: DSBA oxidoreductase; KEGG: ppr:PBPRB0337 hypothetical 2-hydroxychromene-2-carboxylateisomerase family protein; DSBA oxidoreductase complement(1281773..1282423) Shewanella frigidimarina NCIMB 400 4277617 YP_749775.1 CDS Sfri_1084 NC_008345.1 1282848 1283204 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein; sigma 54 modulation protein/ribosomal protein S30EA 1282848..1283204 Shewanella frigidimarina NCIMB 400 4277618 YP_749776.1 CDS Sfri_1085 NC_008345.1 1283517 1284590 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cps:CPS_4684 GGDEF domain protein; diguanylate cyclase complement(1283517..1284590) Shewanella frigidimarina NCIMB 400 4277619 YP_749777.1 CDS Sfri_1086 NC_008345.1 1285125 1285850 R PFAM: protein of unknown function DUF28; KEGG: son:SO3401 hypothetical protein; hypothetical protein complement(1285125..1285850) Shewanella frigidimarina NCIMB 400 4277620 YP_749778.1 CDS Sfri_1087 NC_008345.1 1286405 1286716 D KEGG: son:SO3395 hypothetical protein; hypothetical protein 1286405..1286716 Shewanella frigidimarina NCIMB 400 4277621 YP_749779.1 CDS Sfri_1088 NC_008345.1 1286804 1287400 R PFAM: regulatory protein, TetR; KEGG: son:SO3393 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein complement(1286804..1287400) Shewanella frigidimarina NCIMB 400 4277622 YP_749780.1 CDS Sfri_1089 NC_008345.1 1287546 1288589 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ppr:PBPRB1366 putative NADH-dependent flavin oxidoreductase; NADH:flavin oxidoreductase 1287546..1288589 Shewanella frigidimarina NCIMB 400 4277623 YP_749781.1 CDS Sfri_1090 NC_008345.1 1288828 1290153 D PFAM: protein kinase; leucine-rich repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein, typical subtype; KEGG: son:SO4016 hypothetical protein; serine/threonine protein kinase 1288828..1290153 Shewanella frigidimarina NCIMB 400 4277624 YP_749782.1 CDS Sfri_1091 NC_008345.1 1290354 1290545 D KEGG: bte:BTH_II1256 thioredoxin; hypothetical protein 1290354..1290545 Shewanella frigidimarina NCIMB 400 4277625 YP_749783.1 CDS Sfri_1092 NC_008345.1 1290796 1291140 D TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: cps:CPS_1298 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA 1290796..1291140 Shewanella frigidimarina NCIMB 400 4277626 YP_749784.1 CDS Sfri_1093 NC_008345.1 1291785 1292393 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: hhe:HH1827 hypothetical protein; Sel1 domain-containing protein complement(1291785..1292393) Shewanella frigidimarina NCIMB 400 4277627 YP_749785.1 CDS smpB NC_008345.1 1293504 1293992 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1293504..1293992) Shewanella frigidimarina NCIMB 400 4277628 YP_749786.1 CDS Sfri_1095 NC_008345.1 1294245 1294679 D PFAM: cyclase/dehydrase; KEGG: son:SO1474 hypothetical protein; cyclase/dehydrase 1294245..1294679 Shewanella frigidimarina NCIMB 400 4277629 YP_749787.1 CDS Sfri_1096 NC_008345.1 1294672 1295007 D PFAM: protein of unknown function UPF0125; KEGG: son:SO1475 hypothetical protein; hypothetical protein 1294672..1295007 Shewanella frigidimarina NCIMB 400 4277159 YP_749788.1 CDS Sfri_1097 NC_008345.1 1295193 1295696 R PFAM: SmpA/OmlA domain protein; KEGG: son:SO1476 small protein A; SmpA/OmlA domain-containing protein complement(1295193..1295696) Shewanella frigidimarina NCIMB 400 4277160 YP_749789.1 CDS Sfri_1098 NC_008345.1 1296011 1296850 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO1478 methylase, putative; uroporphyrin-III C/tetrapyrrole methyltransferase 1296011..1296850 Shewanella frigidimarina NCIMB 400 4277161 YP_749790.1 CDS Sfri_1099 NC_008345.1 1297165 1297377 D KEGG: son:SO1479 hypothetical protein; hypothetical protein 1297165..1297377 Shewanella frigidimarina NCIMB 400 4277162 YP_749791.1 CDS Sfri_1100 NC_008345.1 1297400 1299130 D KEGG: son:SO1480 GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 1297400..1299130 Shewanella frigidimarina NCIMB 400 4277163 YP_749792.1 CDS Sfri_1101 NC_008345.1 1300467 1302119 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 1300467..1302119 Shewanella frigidimarina NCIMB 400 4277164 YP_749793.1 CDS Sfri_1102 NC_008345.1 1302210 1303526 D TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: son:SO1484 isocitrate lyase; isocitrate lyase 1302210..1303526 Shewanella frigidimarina NCIMB 400 4277165 YP_749794.1 CDS Sfri_1103 NC_008345.1 1304050 1305504 D PFAM: GAF domain protein; KEGG: son:SO3337 hypothetical protein; putative signal transduction protein 1304050..1305504 Shewanella frigidimarina NCIMB 400 4277166 YP_749795.1 CDS Sfri_1104 NC_008345.1 1305614 1306219 R KEGG: son:SO3336 hypothetical protein; hypothetical protein complement(1305614..1306219) Shewanella frigidimarina NCIMB 400 4277167 YP_749796.1 CDS Sfri_1105 NC_008345.1 1306269 1307093 R PFAM: protein of unknown function DUF980; KEGG: son:SO3335 hypothetical protein; hypothetical protein complement(1306269..1307093) Shewanella frigidimarina NCIMB 400 4277168 YP_749797.1 CDS Sfri_1106 NC_008345.1 1307451 1307873 R KEGG: son:SO3332 transcriptional regulator, CopG family; CopG family transcriptional regulator complement(1307451..1307873) Shewanella frigidimarina NCIMB 400 4277169 YP_749798.1 CDS Sfri_1107 NC_008345.1 1307833 1308579 R KEGG: son:SO3331 hypothetical protein; hypothetical protein complement(1307833..1308579) Shewanella frigidimarina NCIMB 400 4277170 YP_749799.1 CDS Sfri_1108 NC_008345.1 1309353 1309568 D KEGG: cps:CPS_4821 hypothetical protein; hypothetical protein 1309353..1309568 Shewanella frigidimarina NCIMB 400 4277171 YP_749800.1 CDS Sfri_1109 NC_008345.1 1309638 1310171 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3324 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(1309638..1310171) Shewanella frigidimarina NCIMB 400 4277172 YP_749801.1 CDS Sfri_1110 NC_008345.1 1310200 1310502 R KEGG: son:SO3325 NrfJ-related protein; NrfJ-related protein complement(1310200..1310502) Shewanella frigidimarina NCIMB 400 4277173 YP_749802.1 CDS Sfri_1111 NC_008345.1 1310693 1312429 R PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: son:SO3317 5'-nucleotidase, putative; metallophosphoesterase complement(1310693..1312429) Shewanella frigidimarina NCIMB 400 4277174 YP_749803.1 CDS Sfri_1112 NC_008345.1 1312652 1313734 R PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: son:SO3316 hypothetical protein; hypothetical protein complement(1312652..1313734) Shewanella frigidimarina NCIMB 400 4277175 YP_749804.1 CDS Sfri_1113 NC_008345.1 1313849 1314970 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1313849..1314970 Shewanella frigidimarina NCIMB 400 4277034 YP_749805.1 CDS Sfri_1114 NC_008345.1 1315002 1315787 D KEGG: son:SO3314 fimbrial biogenesis and twitching motility protein, putative; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1315002..1315787 Shewanella frigidimarina NCIMB 400 4277035 YP_749806.1 CDS Sfri_1115 NC_008345.1 1315787 1316764 D KEGG: son:SO3313 hypothetical protein; hypothetical protein 1315787..1316764 Shewanella frigidimarina NCIMB 400 4277036 YP_749807.1 CDS ispG NC_008345.1 1316796 1317911 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1316796..1317911 Shewanella frigidimarina NCIMB 400 4277037 YP_749808.1 CDS hisS NC_008345.1 1318010 1319284 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1318010..1319284 Shewanella frigidimarina NCIMB 400 4277038 YP_749809.1 CDS Sfri_1118 NC_008345.1 1319311 1319931 D KEGG: son:SO3310 hypothetical protein; hypothetical protein 1319311..1319931 Shewanella frigidimarina NCIMB 400 4277039 YP_749810.1 CDS Sfri_1119 NC_008345.1 1319944 1321179 D with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1319944..1321179 Shewanella frigidimarina NCIMB 400 4277040 YP_749811.1 CDS engA NC_008345.1 1321283 1322749 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1321283..1322749 Shewanella frigidimarina NCIMB 400 4277041 YP_749812.1 CDS Sfri_1121 NC_008345.1 1322949 1323158 D KEGG: cps:CPS_0070 hypothetical protein; hypothetical protein 1322949..1323158 Shewanella frigidimarina NCIMB 400 4277042 YP_749813.1 CDS Sfri_1122 NC_008345.1 1323175 1323576 R hypothetical protein complement(1323175..1323576) Shewanella frigidimarina NCIMB 400 4277043 YP_749814.1 CDS Sfri_1123 NC_008345.1 1323714 1324280 D PFAM: cytochrome B561; KEGG: bba:Bd1410 putative Ni,Fe-hydrogenase I cytochrome b subunit; cytochrome B561 1323714..1324280 Shewanella frigidimarina NCIMB 400 4277044 YP_749815.1 CDS Sfri_1124 NC_008345.1 1324364 1324909 D PFAM: Redoxin domain protein; KEGG: son:SO2100 thioredoxin family protein; redoxin domain-containing protein 1324364..1324909 Shewanella frigidimarina NCIMB 400 4277045 YP_749816.1 CDS Sfri_1125 NC_008345.1 1324914 1325153 D KEGG: son:SO2101 lipoprotein, putative; putative lipoprotein 1324914..1325153 Shewanella frigidimarina NCIMB 400 4277046 YP_749817.1 CDS Sfri_1126 NC_008345.1 1325144 1326442 D KEGG: son:SO2102 hypothetical protein; hypothetical protein 1325144..1326442 Shewanella frigidimarina NCIMB 400 4277047 YP_749818.1 CDS Sfri_1127 NC_008345.1 1326499 1327395 D PFAM: ApbE family lipoprotein; KEGG: son:SO2103 ApbE family protein; ApbE family lipoprotein 1326499..1327395 Shewanella frigidimarina NCIMB 400 4277048 YP_749819.1 CDS Sfri_1128 NC_008345.1 1327412 1328071 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2104 DNA-binding response regulator YgiX, putative; two component transcriptional regulator, winged helix family protein 1327412..1328071 Shewanella frigidimarina NCIMB 400 4277049 YP_749820.1 CDS Sfri_1129 NC_008345.1 1328158 1329561 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2105 sensor protein YgiY, putative; periplasmic sensor signal transduction histidine kinase 1328158..1329561 Shewanella frigidimarina NCIMB 400 4277050 YP_749821.1 CDS Sfri_1130 NC_008345.1 1329668 1331203 R KEGG: son:SO4649 hypothetical protein; hypothetical protein complement(1329668..1331203) Shewanella frigidimarina NCIMB 400 4277051 YP_749822.1 CDS Sfri_1131 NC_008345.1 1331379 1332707 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4648 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase complement(1331379..1332707) Shewanella frigidimarina NCIMB 400 4278032 YP_749823.1 CDS Sfri_1132 NC_008345.1 1332700 1333383 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4647 DNA-binding response regulator; two component transcriptional regulator, winged helix family protein complement(1332700..1333383) Shewanella frigidimarina NCIMB 400 4278033 YP_749824.1 CDS Sfri_1133 NC_008345.1 1333387 1333743 R PFAM: Propeptide, PepSY amd peptidase M4; KEGG: son:SO4646 hypothetical protein; peptidase complement(1333387..1333743) Shewanella frigidimarina NCIMB 400 4278034 YP_749825.1 CDS Sfri_1134 NC_008345.1 1334085 1334966 D KEGG: son:SO4645 hypothetical protein; hypothetical protein 1334085..1334966 Shewanella frigidimarina NCIMB 400 4278035 YP_749826.1 CDS Sfri_1135 NC_008345.1 1335069 1335746 D PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: son:SO3969 OmpA family protein; OmpA/MotB domain-containing protein 1335069..1335746 Shewanella frigidimarina NCIMB 400 4278036 YP_749827.1 CDS xseA NC_008345.1 1335999 1337351 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1335999..1337351) Shewanella frigidimarina NCIMB 400 4278037 YP_749828.1 CDS Sfri_1137 NC_008345.1 1337458 1338924 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1337458..1338924 Shewanella frigidimarina NCIMB 400 4278038 YP_749829.1 CDS guaA NC_008345.1 1339029 1340606 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1339029..1340606 Shewanella frigidimarina NCIMB 400 4278039 YP_749830.1 CDS Sfri_1139 NC_008345.1 1340706 1341275 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: son:SO3291 cytidine/deoxycytidylate deaminase family protein; zinc-binding CMP/dCMP deaminase 1340706..1341275 Shewanella frigidimarina NCIMB 400 4278040 YP_749831.1 CDS Sfri_1140 NC_008345.1 1341591 1343021 R YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase complement(1341591..1343021) Shewanella frigidimarina NCIMB 400 4278041 YP_749832.1 CDS Sfri_1141 NC_008345.1 1343377 1347258 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1343377..1347258 Shewanella frigidimarina NCIMB 400 4278042 YP_749833.1 CDS Sfri_1142 NC_008345.1 1348398 1349954 D PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: son:SO3286 cytochrome bd-I oxidase subunit I; cytochrome bd ubiquinol oxidase, subunit I 1348398..1349954 Shewanella frigidimarina NCIMB 400 4278043 YP_749834.1 CDS Sfri_1143 NC_008345.1 1349970 1351109 D TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: son:SO3285 cytochrome bd-I oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II 1349970..1351109 Shewanella frigidimarina NCIMB 400 4278044 YP_749835.1 CDS Sfri_1144 NC_008345.1 1351127 1351237 D TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: ppr:PBPRA2556 hypothetical protein; cyd operon protein YbgT 1351127..1351237 Shewanella frigidimarina NCIMB 400 4278045 YP_749836.1 CDS Sfri_1145 NC_008345.1 1351601 1352050 D KEGG: hch:HCH_03970 protein required for attachment to host cells; host cell attachment-required protein 1351601..1352050 Shewanella frigidimarina NCIMB 400 4278046 YP_749837.1 CDS Sfri_1146 NC_008345.1 1352295 1354301 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3282 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(1352295..1354301) Shewanella frigidimarina NCIMB 400 4278047 YP_749838.1 CDS Sfri_1147 NC_008345.1 1354448 1357513 R PFAM: acriflavin resistance protein; KEGG: son:SO3279 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(1354448..1357513) Shewanella frigidimarina NCIMB 400 4278048 YP_749839.1 CDS Sfri_1148 NC_008345.1 1357510 1358631 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO3278 hypothetical protein; RND family efflux transporter MFP subunit complement(1357510..1358631) Shewanella frigidimarina NCIMB 400 4277857 YP_749840.1 CDS Sfri_1149 NC_008345.1 1358846 1359526 D PFAM: regulatory protein, TetR; KEGG: son:SO3277 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein 1358846..1359526 Shewanella frigidimarina NCIMB 400 4277858 YP_749841.1 CDS Sfri_1150 NC_008345.1 1359660 1360592 D KEGG: son:SO3276 hypothetical protein; hypothetical protein 1359660..1360592 Shewanella frigidimarina NCIMB 400 4277859 YP_749842.1 CDS Sfri_1151 NC_008345.1 1360676 1361122 R PFAM: protein of unknown function DUF400; KEGG: son:SO3256 hypothetical protein; hypothetical protein complement(1360676..1361122) Shewanella frigidimarina NCIMB 400 4277860 YP_749843.1 CDS Sfri_1152 NC_008345.1 1361119 1361829 R KEGG: son:SO3257 hypothetical protein; hypothetical protein complement(1361119..1361829) Shewanella frigidimarina NCIMB 400 4277861 YP_749844.1 CDS Sfri_1153 NC_008345.1 1362099 1363307 D KEGG: son:SO3258 hypothetical protein; hypothetical protein 1362099..1363307 Shewanella frigidimarina NCIMB 400 4277862 YP_749845.1 CDS Sfri_1154 NC_008345.1 1363799 1364278 D KEGG: son:SO3274 hypothetical protein; hypothetical protein 1363799..1364278 Shewanella frigidimarina NCIMB 400 4277863 YP_749846.1 CDS Sfri_1155 NC_008345.1 1364359 1364919 D KEGG: son:SO3275 hypothetical protein; hypothetical protein 1364359..1364919 Shewanella frigidimarina NCIMB 400 4277864 YP_749847.1 CDS Sfri_1156 NC_008345.1 1365076 1365549 R PFAM: FlgN family protein; KEGG: son:SO3255 flagellar biosynthetic protein FlgN; FlgN family protein complement(1365076..1365549) Shewanella frigidimarina NCIMB 400 4277865 YP_749848.1 CDS Sfri_1157 NC_008345.1 1365652 1365981 R PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: son:SO3254 negative regulator of flagellin synthesis FlgM; anti-sigma-28 factor FlgM complement(1365652..1365981) Shewanella frigidimarina NCIMB 400 4277866 YP_749849.1 CDS flgA NC_008345.1 1366056 1366763 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1366056..1366763) Shewanella frigidimarina NCIMB 400 4277867 YP_749850.1 CDS Sfri_1159 NC_008345.1 1367134 1368054 D PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO3252 chemotaxis protein CheV; response regulator receiver modulated CheW protein 1367134..1368054 Shewanella frigidimarina NCIMB 400 4277868 YP_749851.1 CDS Sfri_1160 NC_008345.1 1368127 1368960 D PFAM: MCP methyltransferase, CheR-type; KEGG: son:SO3251 chemotaxis protein methyltransferase CheR; chemotaxis protein CheR 1368127..1368960 Shewanella frigidimarina NCIMB 400 4277869 YP_749852.1 CDS flgB NC_008345.1 1369097 1369495 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 1369097..1369495 Shewanella frigidimarina NCIMB 400 4277870 YP_749853.1 CDS flgC NC_008345.1 1369498 1369914 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1369498..1369914 Shewanella frigidimarina NCIMB 400 4277871 YP_749854.1 CDS flgD NC_008345.1 1369938 1370723 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1369938..1370723 Shewanella frigidimarina NCIMB 400 4277872 YP_749855.1 CDS flgE NC_008345.1 1370784 1372163 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1370784..1372163 Shewanella frigidimarina NCIMB 400 4277873 YP_749856.1 CDS flgF NC_008345.1 1372452 1373195 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1372452..1373195 Shewanella frigidimarina NCIMB 400 4277874 YP_749857.1 CDS flgG NC_008345.1 1373207 1373995 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1373207..1373995 Shewanella frigidimarina NCIMB 400 4278434 YP_749858.1 CDS flgH NC_008345.1 1374005 1374679 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 1374005..1374679 Shewanella frigidimarina NCIMB 400 4278435 YP_749859.1 CDS flgI NC_008345.1 1374690 1375796 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1374690..1375796 Shewanella frigidimarina NCIMB 400 4278436 YP_749860.1 CDS flgJ NC_008345.1 1375808 1376941 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1375808..1376941 Shewanella frigidimarina NCIMB 400 4278437 YP_749861.1 CDS Sfri_1170 NC_008345.1 1376941 1378869 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: son:SO3239.3 hypothetical flagellar hook-associated protein; flagellar hook-associated protein FlgK 1376941..1378869 Shewanella frigidimarina NCIMB 400 4278438 YP_749862.1 CDS flgL NC_008345.1 1378880 1380085 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 1378880..1380085 Shewanella frigidimarina NCIMB 400 4278439 YP_749863.1 CDS Sfri_1172 NC_008345.1 1380178 1381626 D PFAM: flagellin domain protein; KEGG: pae:PA1092 flagellin type B; flagellin domain-containing protein 1380178..1381626 Shewanella frigidimarina NCIMB 400 4278440 YP_749864.1 CDS Sfri_1173 NC_008345.1 1381888 1383333 D PFAM: flagellin domain protein; KEGG: pae:PA1092 flagellin type B; flagellin domain-containing protein 1381888..1383333 Shewanella frigidimarina NCIMB 400 4278441 YP_749865.1 CDS Sfri_1174 NC_008345.1 1383550 1383999 D PFAM: flagellar protein FlaG protein; KEGG: son:SO3236 flagellin FlaG; flagellar protein FlaG protein 1383550..1383999 Shewanella frigidimarina NCIMB 400 4278442 YP_749866.1 CDS Sfri_1175 NC_008345.1 1384065 1385429 D PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: son:SO3235 flagellar hook-associated protein FliD; flagellar hook-associated 2 domain-containing protein 1384065..1385429 Shewanella frigidimarina NCIMB 400 4278443 YP_749867.1 CDS Sfri_1176 NC_008345.1 1385517 1385861 D KEGG: son:SO3234 hypothetical protein; hypothetical protein 1385517..1385861 Shewanella frigidimarina NCIMB 400 4278444 YP_749868.1 CDS fliS NC_008345.1 1385868 1386272 D flagellin specific chaperone; flagellar protein FliS 1385868..1386272 Shewanella frigidimarina NCIMB 400 4278445 YP_749869.1 CDS Sfri_1178 NC_008345.1 1386925 1388355 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: son:SO3232 flagellar regulatory protein A; sigma54 specific transcriptional regulator, Fis family protein 1386925..1388355 Shewanella frigidimarina NCIMB 400 4278446 YP_749870.1 CDS Sfri_1179 NC_008345.1 1388861 1389931 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: son:SO3231 flagellar regulatory protein B; PAS/PAC sensor signal transduction histidine kinase 1388861..1389931 Shewanella frigidimarina NCIMB 400 4278447 YP_749871.1 CDS Sfri_1180 NC_008345.1 1389924 1391273 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: son:SO3230 flagellar regulatory protein C; Fis family two component sigma-54-specific transcriptional regulator 1389924..1391273 Shewanella frigidimarina NCIMB 400 4278448 YP_749872.1 CDS Sfri_1181 NC_008345.1 1391514 1391855 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: son:SO3229 flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 1391514..1391855 Shewanella frigidimarina NCIMB 400 4278449 YP_749873.1 CDS fliF NC_008345.1 1391931 1393607 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1391931..1393607 Shewanella frigidimarina NCIMB 400 4278450 YP_749874.1 CDS fliG NC_008345.1 1393600 1394655 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1393600..1394655 Shewanella frigidimarina NCIMB 400 4277052 YP_749875.1 CDS fliH NC_008345.1 1394810 1396021 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1394810..1396021 Shewanella frigidimarina NCIMB 400 4277053 YP_749876.1 CDS fliI NC_008345.1 1396002 1397342 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1396002..1397342 Shewanella frigidimarina NCIMB 400 4277054 YP_749877.1 CDS Sfri_1186 NC_008345.1 1397348 1397794 D TIGRFAM: flagellar export protein FliJ; KEGG: son:SO3224 flagellar protein FliJ; flagellar export protein FliJ 1397348..1397794 Shewanella frigidimarina NCIMB 400 4277055 YP_749878.1 CDS Sfri_1187 NC_008345.1 1398099 1399637 D PFAM: flagellar hook-length control protein; KEGG: son:SO3223 flagellar hook-length control protein FliK; flagellar hook-length control protein 1398099..1399637 Shewanella frigidimarina NCIMB 400 4277056 YP_749879.1 CDS fliL NC_008345.1 1399731 1400252 D interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1399731..1400252 Shewanella frigidimarina NCIMB 400 4277057 YP_749880.1 CDS fliM NC_008345.1 1400282 1401310 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1400282..1401310 Shewanella frigidimarina NCIMB 400 4277058 YP_749881.1 CDS fliN NC_008345.1 1401322 1401705 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1401322..1401705 Shewanella frigidimarina NCIMB 400 4277059 YP_749882.1 CDS Sfri_1191 NC_008345.1 1401791 1402201 D PFAM: flagellar biosynthesis protein, FliO; KEGG: son:SO3219 flagellar protein FliO; flagellar biosynthesis protein, FliO 1401791..1402201 Shewanella frigidimarina NCIMB 400 4277060 YP_749883.1 CDS fliP NC_008345.1 1402201 1402962 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1402201..1402962 Shewanella frigidimarina NCIMB 400 4277061 YP_749884.1 CDS Sfri_1193 NC_008345.1 1402975 1403244 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: son:SO3217 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 1402975..1403244 Shewanella frigidimarina NCIMB 400 4277062 YP_749885.1 CDS fliR NC_008345.1 1403248 1404051 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1403248..1404051 Shewanella frigidimarina NCIMB 400 4277063 YP_749886.1 CDS flhB NC_008345.1 1404061 1405194 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1404061..1405194 Shewanella frigidimarina NCIMB 400 4277064 YP_749887.1 CDS flhA NC_008345.1 1405311 1407410 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1405311..1407410 Shewanella frigidimarina NCIMB 400 4277065 YP_749888.1 CDS flhF NC_008345.1 1407440 1408825 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1407440..1408825 Shewanella frigidimarina NCIMB 400 4277066 YP_749889.1 CDS Sfri_1198 NC_008345.1 1408830 1409711 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3211 flagellar biosynthetic protein FlhG; cobyrinic acid a,c-diamide synthase 1408830..1409711 Shewanella frigidimarina NCIMB 400 4277067 YP_749890.1 CDS fliA NC_008345.1 1409704 1410423 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1409704..1410423 Shewanella frigidimarina NCIMB 400 4277068 YP_749891.1 CDS Sfri_1200 NC_008345.1 1410480 1410851 D PFAM: response regulator receiver; KEGG: son:SO3209 chemotaxis protein CheY; response regulator receiver protein 1410480..1410851 Shewanella frigidimarina NCIMB 400 4277069 YP_749892.1 CDS Sfri_1201 NC_008345.1 1410865 1411602 D PFAM: Chemotaxis phosphatase, CheZ; KEGG: son:SO3208 chemotaxis protein CheZ; chemotaxis phosphatase, CheZ 1410865..1411602 Shewanella frigidimarina NCIMB 400 4278015 YP_749893.1 CDS Sfri_1202 NC_008345.1 1411618 1413828 D PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: son:SO3207 chemotaxis protein; CheA signal transduction histidine kinase 1411618..1413828 Shewanella frigidimarina NCIMB 400 4278016 YP_749894.1 CDS Sfri_1203 NC_008345.1 1413859 1415055 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1413859..1415055 Shewanella frigidimarina NCIMB 400 4278017 YP_749895.1 CDS Sfri_1204 NC_008345.1 1415084 1415512 D KEGG: son:SO3205 hypothetical protein; hypothetical protein 1415084..1415512 Shewanella frigidimarina NCIMB 400 4278018 YP_749896.1 CDS Sfri_1205 NC_008345.1 1415558 1416352 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3204 ParA family protein; cobyrinic acid a,c-diamide synthase 1415558..1416352 Shewanella frigidimarina NCIMB 400 4278019 YP_749897.1 CDS Sfri_1206 NC_008345.1 1416336 1417418 D PFAM: CheW domain protein; KEGG: son:SO3203 CheW domain protein; CheW protein 1416336..1417418 Shewanella frigidimarina NCIMB 400 4278020 YP_749898.1 CDS Sfri_1207 NC_008345.1 1417421 1417915 D PFAM: CheW domain protein; KEGG: son:SO3202 purine-binding chemotaxis protein CheW; CheW protein 1417421..1417915 Shewanella frigidimarina NCIMB 400 4278021 YP_749899.1 CDS Sfri_1208 NC_008345.1 1418008 1418406 D KEGG: son:SO3200 hypothetical protein; hypothetical protein 1418008..1418406 Shewanella frigidimarina NCIMB 400 4278022 YP_749900.1 CDS Sfri_1209 NC_008345.1 1418495 1419871 R PFAM: Fmu (Sun) domain protein; KEGG: son:SO1575 NOL1/NOP2/sun family putative RNA methylase; Fmu (Sun) domain-containing protein complement(1418495..1419871) Shewanella frigidimarina NCIMB 400 4278023 YP_749901.1 CDS Sfri_1210 NC_008345.1 1420316 1420987 R TIGRFAM: conserved hypothetical protein; KEGG: son:SO1579 hypothetical protein; hypothetical protein complement(1420316..1420987) Shewanella frigidimarina NCIMB 400 4278024 YP_749902.1 CDS Sfri_1211 NC_008345.1 1421457 1421888 D PFAM: protein of unknown function DUF785; KEGG: ilo:IL0498 predicted aspartyl protease; hypothetical protein 1421457..1421888 Shewanella frigidimarina NCIMB 400 4278025 YP_749903.1 CDS Sfri_1212 NC_008345.1 1421892 1422797 D TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: vfi:VF0658 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 1421892..1422797 Shewanella frigidimarina NCIMB 400 4278026 YP_749904.1 CDS Sfri_1213 NC_008345.1 1422797 1423810 D PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO1583 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 1422797..1423810 Shewanella frigidimarina NCIMB 400 4278027 YP_749905.1 CDS Sfri_1214 NC_008345.1 1424345 1425928 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: ilo:IL0032 methyl-accepting chemotaxis protein (PAS/PAC and MSP doamins); methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1424345..1425928 Shewanella frigidimarina NCIMB 400 4278028 YP_749906.1 CDS Sfri_1215 NC_008345.1 1426034 1428070 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cps:CPS_4528 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(1426034..1428070) Shewanella frigidimarina NCIMB 400 4278029 YP_749907.1 CDS Sfri_1216 NC_008345.1 1428443 1429135 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1585 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase 1428443..1429135 Shewanella frigidimarina NCIMB 400 4278030 YP_749908.1 CDS Sfri_1217 NC_008345.1 1429234 1429491 R KEGG: son:SO1588 hypothetical protein; hypothetical protein complement(1429234..1429491) Shewanella frigidimarina NCIMB 400 4278031 YP_749909.1 CDS Sfri_1218 NC_008345.1 1429556 1431184 R PFAM: 2-nitropropane dioxygenase, NPD; KEGG: son:SO1597 hypothetical protein; 2-nitropropane dioxygenase complement(1429556..1431184) Shewanella frigidimarina NCIMB 400 4278468 YP_749910.1 CDS Sfri_1219 NC_008345.1 1431202 1437159 R PFAM: beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: son:SO1599 multi-domain beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ complement(1431202..1437159) Shewanella frigidimarina NCIMB 400 4278469 YP_749911.1 CDS Sfri_1220 NC_008345.1 1437156 1439249 R KEGG: ppr:PBPRA1459 omega-3 polyunsaturated fatty acid synthase PfaB; omega-3 polyunsaturated fatty acid synthase PfaB complement(1437156..1439249) Shewanella frigidimarina NCIMB 400 4278470 YP_749912.1 CDS Sfri_1221 NC_008345.1 1439246 1447108 R PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KEGG: ppr:PBPRA1460 omega-3 polyunsaturated fatty acid synthase PfaA; beta-ketoacyl synthase complement(1439246..1447108) Shewanella frigidimarina NCIMB 400 4278471 YP_749913.1 CDS Sfri_1222 NC_008345.1 1447092 1447973 R KEGG: son:SO1603 transcriptional regulator, putative; transcriptional regulator complement(1447092..1447973) Shewanella frigidimarina NCIMB 400 4278472 YP_749914.1 CDS Sfri_1223 NC_008345.1 1448419 1449417 R KEGG: sde:Sde_3560 hypothetical protein; hypothetical protein complement(1448419..1449417) Shewanella frigidimarina NCIMB 400 4278473 YP_749915.1 CDS Sfri_1224 NC_008345.1 1449419 1449952 R KEGG: sde:Sde_3561 sigma-70 factor; sigma-70 factor complement(1449419..1449952) Shewanella frigidimarina NCIMB 400 4278474 YP_749916.1 CDS Sfri_1225 NC_008345.1 1449949 1450515 R KEGG: sde:Sde_3562 hypothetical protein; hypothetical protein complement(1449949..1450515) Shewanella frigidimarina NCIMB 400 4278475 YP_749917.1 CDS Sfri_1226 NC_008345.1 1450521 1451174 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: sde:Sde_3563 ATPase; MotA/TolQ/ExbB proton channel complement(1450521..1451174) Shewanella frigidimarina NCIMB 400 4278476 YP_749918.1 CDS Sfri_1227 NC_008345.1 1451307 1451660 R hypothetical protein complement(1451307..1451660) Shewanella frigidimarina NCIMB 400 4278477 YP_749919.1 CDS Sfri_1228 NC_008345.1 1451662 1452453 R PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_02603 FOG: TPR repeat; TPR repeat-containing protein complement(1451662..1452453) Shewanella frigidimarina NCIMB 400 4278478 YP_749920.1 CDS Sfri_1229 NC_008345.1 1452440 1455490 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_02602 hypothetical protein; TPR repeat-containing protein complement(1452440..1455490) Shewanella frigidimarina NCIMB 400 4278479 YP_749921.1 CDS Sfri_1230 NC_008345.1 1455490 1457568 R KEGG: sde:Sde_3567 hypothetical protein; hypothetical protein complement(1455490..1457568) Shewanella frigidimarina NCIMB 400 4278480 YP_749922.1 CDS Sfri_1231 NC_008345.1 1457728 1458288 R KEGG: sde:Sde_3568 helix-turn-helix, AraC type; helix-turn-helix, AraC type complement(1457728..1458288) Shewanella frigidimarina NCIMB 400 4278481 YP_749923.1 CDS Sfri_1232 NC_008345.1 1458343 1459506 R KEGG: hch:HCH_02599 hypothetical protein; hypothetical protein complement(1458343..1459506) Shewanella frigidimarina NCIMB 400 4278482 YP_749924.1 CDS Sfri_1233 NC_008345.1 1459484 1459744 R KEGG: sde:Sde_3552 lipoprotein, putative; putative lipoprotein complement(1459484..1459744) Shewanella frigidimarina NCIMB 400 4278483 YP_749925.1 CDS Sfri_1234 NC_008345.1 1459749 1460252 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: hch:HCH_02597 thiol-disulfide isomerase and thioredoxins; redoxin domain-containing protein complement(1459749..1460252) Shewanella frigidimarina NCIMB 400 4278484 YP_749926.1 CDS Sfri_1235 NC_008345.1 1460330 1460962 R KEGG: hch:HCH_02596 hypothetical protein; hypothetical protein complement(1460330..1460962) Shewanella frigidimarina NCIMB 400 4278485 YP_749927.1 CDS Sfri_1236 NC_008345.1 1460962 1461702 R PFAM: protein of unknown function DUF1058; SH3, type 3 domain protein; KEGG: sde:Sde_3549 hypothetical protein; hypothetical protein complement(1460962..1461702) Shewanella frigidimarina NCIMB 400 4277351 YP_749928.1 CDS Sfri_1237 NC_008345.1 1461760 1464417 R KEGG: hch:HCH_02594 hypothetical protein; hypothetical protein complement(1461760..1464417) Shewanella frigidimarina NCIMB 400 4277352 YP_749929.1 CDS Sfri_1238 NC_008345.1 1464721 1465989 D KEGG: hch:HCH_02593 hypothetical protein; hypothetical protein 1464721..1465989 Shewanella frigidimarina NCIMB 400 4277353 YP_749930.1 CDS Sfri_1239 NC_008345.1 1466004 1468430 D KEGG: hch:HCH_02592 hypothetical protein; hypothetical protein 1466004..1468430 Shewanella frigidimarina NCIMB 400 4277354 YP_749931.1 CDS Sfri_1240 NC_008345.1 1468575 1470152 D TIGRFAM: Twin-arginine translocation pathway signal; KEGG: hch:HCH_02591 hypothetical protein; twin-arginine translocation pathway signal 1468575..1470152 Shewanella frigidimarina NCIMB 400 4277355 YP_749932.1 CDS Sfri_1241 NC_008345.1 1470805 1471881 D KEGG: sty:HCM2.0093c hypothetical protein; hypothetical protein 1470805..1471881 Shewanella frigidimarina NCIMB 400 4277356 YP_749933.1 CDS Sfri_1242 NC_008345.1 1472307 1473050 D KEGG: sty:STY3192 hypothetical protein; hypothetical protein 1472307..1473050 Shewanella frigidimarina NCIMB 400 4277357 YP_749934.1 CDS Sfri_1243 NC_008345.1 1473171 1473650 D hypothetical protein 1473171..1473650 Shewanella frigidimarina NCIMB 400 4277358 YP_749935.1 CDS Sfri_1244 NC_008345.1 1473891 1474937 R PFAM: ApbE family lipoprotein; KEGG: sde:Sde_3569 membrane protein; ApbE family lipoprotein complement(1473891..1474937) Shewanella frigidimarina NCIMB 400 4277359 YP_749936.1 CDS Sfri_1245 NC_008345.1 1475090 1476085 D PFAM: 4'-phosphopantetheinyl transferase; KEGG: son:SO1604 4'-phosphopantetheinyl transferase family protein; 4'-phosphopantetheinyl transferase 1475090..1476085 Shewanella frigidimarina NCIMB 400 4277360 YP_749937.1 CDS Sfri_1246 NC_008345.1 1476242 1478233 R PFAM: beta-lactamase domain protein; KEGG: son:SO1606 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein complement(1476242..1478233) Shewanella frigidimarina NCIMB 400 4277361 YP_749938.1 CDS Sfri_1247 NC_008345.1 1478449 1479405 D PFAM: regulatory protein, LysR; KEGG: son:SO1607 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 1478449..1479405 Shewanella frigidimarina NCIMB 400 4277362 YP_749939.1 CDS queF NC_008345.1 1479554 1480411 R catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(1479554..1480411) Shewanella frigidimarina NCIMB 400 4277363 YP_749940.1 CDS Sfri_1249 NC_008345.1 1480466 1481116 D putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 1480466..1481116 Shewanella frigidimarina NCIMB 400 4277364 YP_749941.1 CDS Sfri_1250 NC_008345.1 1481231 1483951 R KEGG: son:SO4019 hypothetical protein; hypothetical protein complement(1481231..1483951) Shewanella frigidimarina NCIMB 400 4277365 YP_749942.1 CDS Sfri_1251 NC_008345.1 1483960 1484733 R KEGG: son:SO1610 hypothetical protein; hypothetical protein complement(1483960..1484733) Shewanella frigidimarina NCIMB 400 4277366 YP_749943.1 CDS Sfri_1252 NC_008345.1 1484734 1485099 R KEGG: son:SO1611 hypothetical protein; hypothetical protein complement(1484734..1485099) Shewanella frigidimarina NCIMB 400 4277367 YP_749944.1 CDS Sfri_1253 NC_008345.1 1485259 1485642 D KEGG: son:SO1612 hypothetical protein; hypothetical protein 1485259..1485642 Shewanella frigidimarina NCIMB 400 4277385 YP_749945.1 CDS Sfri_1254 NC_008345.1 1485677 1485913 R KEGG: pha:PSHAa1976 hypothetical protein; hypothetical protein complement(1485677..1485913) Shewanella frigidimarina NCIMB 400 4277386 YP_749946.1 CDS Sfri_1255 NC_008345.1 1486087 1486716 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1614 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1486087..1486716 Shewanella frigidimarina NCIMB 400 4277387 YP_749947.1 CDS Sfri_1256 NC_008345.1 1486786 1487094 D KEGG: son:SO1615 hypothetical protein; hypothetical protein 1486786..1487094 Shewanella frigidimarina NCIMB 400 4277388 YP_749948.1 CDS Sfri_1257 NC_008345.1 1488253 1489299 D PFAM: Semialdehyde dehydrogenase, NAD - binding; oxidoreductase domain protein; Oxidoreductase, C-terminal domain protein; KEGG: yps:YPTB2178 putative oxidoreductase; oxidoreductase domain-containing protein 1488253..1489299 Shewanella frigidimarina NCIMB 400 4277389 YP_749949.1 CDS Sfri_1258 NC_008345.1 1490579 1491286 D hypothetical protein 1490579..1491286 Shewanella frigidimarina NCIMB 400 4277390 YP_749950.1 CDS Sfri_1259 NC_008345.1 1491381 1491767 R KEGG: son:SO1617 hypothetical protein; hypothetical protein complement(1491381..1491767) Shewanella frigidimarina NCIMB 400 4277391 YP_749951.1 CDS Sfri_1260 NC_008345.1 1491764 1492777 R KEGG: son:SO1618 hypothetical protein; hypothetical protein complement(1491764..1492777) Shewanella frigidimarina NCIMB 400 4277392 YP_749952.1 CDS Sfri_1261 NC_008345.1 1492826 1493188 D PFAM: protein of unknown function DUF446; KEGG: son:SO1619 hypothetical protein; hypothetical protein 1492826..1493188 Shewanella frigidimarina NCIMB 400 4277393 YP_749953.1 CDS Sfri_1262 NC_008345.1 1493272 1494153 D PFAM: pseudouridine synthase; KEGG: vfi:VF0613 tRNA pseudouridine synthase C; pseudouridylate synthase 1493272..1494153 Shewanella frigidimarina NCIMB 400 4277394 YP_749954.1 CDS Sfri_1263 NC_008345.1 1494481 1494945 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 1494481..1494945 Shewanella frigidimarina NCIMB 400 4277395 YP_749955.1 CDS Sfri_1264 NC_008345.1 1494897 1496375 D TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: son:SO1623 PTS system, glucose-specific IIBC component; PTS system glucose-like transporter subunit IIB 1494897..1496375 Shewanella frigidimarina NCIMB 400 4277396 YP_749956.1 CDS purU NC_008345.1 1496555 1497427 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1496555..1497427 Shewanella frigidimarina NCIMB 400 4277397 YP_749957.1 CDS Sfri_1266 NC_008345.1 1497594 1499489 D PFAM: CBS domain containing protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mag:amb0553 response regulator; metal dependent phosphohydrolase 1497594..1499489 Shewanella frigidimarina NCIMB 400 4277398 YP_749958.1 CDS dapD NC_008345.1 1499626 1500450 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(1499626..1500450) Shewanella frigidimarina NCIMB 400 4277399 YP_749959.1 CDS Sfri_1268 NC_008345.1 1500501 1503074 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(1500501..1503074) Shewanella frigidimarina NCIMB 400 4277400 YP_749960.1 CDS Sfri_1269 NC_008345.1 1503099 1503896 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1503099..1503896) Shewanella frigidimarina NCIMB 400 4277401 YP_749961.1 CDS rpsB NC_008345.1 1504247 1504975 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1504247..1504975 Shewanella frigidimarina NCIMB 400 4277402 YP_749962.1 CDS tsf NC_008345.1 1505093 1505944 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1505093..1505944 Shewanella frigidimarina NCIMB 400 4278382 YP_749963.1 CDS pyrH NC_008345.1 1506013 1506750 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1506013..1506750 Shewanella frigidimarina NCIMB 400 4278383 YP_749964.1 CDS frr NC_008345.1 1506870 1507427 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1506870..1507427 Shewanella frigidimarina NCIMB 400 4278384 YP_749965.1 CDS Sfri_1274 NC_008345.1 1507509 1508333 D KEGG: son:SO1633 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 1507509..1508333 Shewanella frigidimarina NCIMB 400 4278385 YP_749966.1 CDS Sfri_1275 NC_008345.1 1508353 1509210 D PFAM: phosphatidate cytidylyltransferase; KEGG: son:SO1634 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1508353..1509210 Shewanella frigidimarina NCIMB 400 4278386 YP_749967.1 CDS Sfri_1276 NC_008345.1 1509216 1510406 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1509216..1510406 Shewanella frigidimarina NCIMB 400 4278387 YP_749968.1 CDS Sfri_1277 NC_008345.1 1510419 1511789 D TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: son:SO1636 membrane-associated zinc metalloprotease, putative; putative membrane-associated zinc metalloprotease 1510419..1511789 Shewanella frigidimarina NCIMB 400 4278388 YP_749969.1 CDS Sfri_1278 NC_008345.1 1511821 1514304 D PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO1637 bacterial surface antigen; surface antigen (D15) 1511821..1514304 Shewanella frigidimarina NCIMB 400 4278389 YP_749970.1 CDS Sfri_1279 NC_008345.1 1514370 1514867 D PFAM: outer membrane chaperone Skp (OmpH); KEGG: son:SO1638 outer membrane protein OmpH; outer membrane chaperone Skp (OmpH) 1514370..1514867 Shewanella frigidimarina NCIMB 400 4278390 YP_749971.1 CDS lpxD NC_008345.1 1514873 1515895 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1514873..1515895 Shewanella frigidimarina NCIMB 400 4278391 YP_749972.1 CDS fabZ NC_008345.1 1515927 1516388 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1515927..1516388 Shewanella frigidimarina NCIMB 400 4278392 YP_749973.1 CDS Sfri_1282 NC_008345.1 1516385 1517155 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1516385..1517155 Shewanella frigidimarina NCIMB 400 4278393 YP_749974.1 CDS lpxB NC_008345.1 1517165 1518313 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1517165..1518313 Shewanella frigidimarina NCIMB 400 4278394 YP_749975.1 CDS rnhB NC_008345.1 1518334 1518972 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1518334..1518972 Shewanella frigidimarina NCIMB 400 4278395 YP_749976.1 CDS dnaE NC_008345.1 1519083 1522559 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1519083..1522559 Shewanella frigidimarina NCIMB 400 4278396 YP_749977.1 CDS Sfri_1286 NC_008345.1 1522569 1524035 D TIGRFAM: tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase-like; PFAM: PP-loop domain protein; KEGG: son:SO1645 cell cycle protein MesJ; tRNA(Ile)-lysidine synthetase 1522569..1524035 Shewanella frigidimarina NCIMB 400 4278397 YP_749978.1 CDS Sfri_1287 NC_008345.1 1524300 1525889 D PFAM: peptidase M28; KEGG: son:SO2198 hypothetical aminopeptidase; peptidase M28 1524300..1525889 Shewanella frigidimarina NCIMB 400 4278398 YP_749979.1 CDS Sfri_1288 NC_008345.1 1526736 1527998 D hypothetical protein 1526736..1527998 Shewanella frigidimarina NCIMB 400 4278486 YP_749980.1 CDS Sfri_1289 NC_008345.1 1528484 1529527 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: sde:Sde_3077 response regulator receiver domain protein (CheY-like); transposase IS116/IS110/IS902 family protein complement(1528484..1529527) Shewanella frigidimarina NCIMB 400 4278487 YP_749981.1 CDS Sfri_1290 NC_008345.1 1530169 1531263 R PFAM: GCN5-related N-acetyltransferase; KEGG: vvu:VV11783 acetyltransferase; N-acetyltransferase GCN5 complement(1530169..1531263) Shewanella frigidimarina NCIMB 400 4278488 YP_749982.1 CDS Sfri_1291 NC_008345.1 1531339 1532790 D PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: vch:VC2333 ribosomal protein S6 modification protein-related protein; RimK domain-containing protein ATP-grasp 1531339..1532790 Shewanella frigidimarina NCIMB 400 4278489 YP_749983.1 CDS Sfri_1292 NC_008345.1 1532879 1533760 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1646 GGDEF family protein; diguanylate cyclase complement(1532879..1533760) Shewanella frigidimarina NCIMB 400 4278490 YP_749984.1 CDS Sfri_1293 NC_008345.1 1533923 1535875 D TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: son:SO1647 glutathione-regulated potassium-efflux system protein KefB, putative; potassium efflux system protein 1533923..1535875 Shewanella frigidimarina NCIMB 400 4278491 YP_749985.1 CDS Sfri_1294 NC_008345.1 1536058 1536594 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pha:PSHAb0332 putative RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor 1536058..1536594 Shewanella frigidimarina NCIMB 400 4278492 YP_749986.1 CDS Sfri_1295 NC_008345.1 1536591 1537304 D KEGG: pha:PSHAb0331 hypothetical protein; hypothetical protein 1536591..1537304 Shewanella frigidimarina NCIMB 400 4278493 YP_749987.1 CDS Sfri_1296 NC_008345.1 1537676 1539262 D KEGG: pha:PSHAb0330 conserved protein of unknown function; putative secreted protein; hypothetical protein 1537676..1539262 Shewanella frigidimarina NCIMB 400 4278494 YP_749988.1 CDS Sfri_1297 NC_008345.1 1539273 1539815 D KEGG: pha:PSHAb0329 putative unknown lipoprotein; hypothetical protein 1539273..1539815 Shewanella frigidimarina NCIMB 400 4278495 YP_749989.1 CDS Sfri_1298 NC_008345.1 1539988 1541124 D PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: pha:PSHAb0328 putative orphan protein; putative signal peptide; TPR repeat-containing protein 1539988..1541124 Shewanella frigidimarina NCIMB 400 4278496 YP_749990.1 CDS Sfri_1299 NC_008345.1 1541135 1542259 D KEGG: pha:PSHAb0327 hypothetical protein; hypothetical protein 1541135..1542259 Shewanella frigidimarina NCIMB 400 4278497 YP_749991.1 CDS Sfri_1300 NC_008345.1 1542734 1545946 D PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD/DEAH box helicase domain protein; KEGG: son:SO1651 Snf2 family protein; SNF2-related protein 1542734..1545946 Shewanella frigidimarina NCIMB 400 4278498 YP_749992.1 CDS Sfri_1301 NC_008345.1 1546158 1546505 D KEGG: pha:PSHAb0422 putative orphan protein; putative orphan protein 1546158..1546505 Shewanella frigidimarina NCIMB 400 4278499 YP_749993.1 CDS mdoG NC_008345.1 1547241 1548833 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1547241..1548833 Shewanella frigidimarina NCIMB 400 4278500 YP_749994.1 CDS Sfri_1303 NC_008345.1 1548830 1550950 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1548830..1550950 Shewanella frigidimarina NCIMB 400 4278501 YP_749995.1 CDS Sfri_1304 NC_008345.1 1551100 1552104 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: dsy:DSY3515 hypothetical protein; NADH:flavin oxidoreductase complement(1551100..1552104) Shewanella frigidimarina NCIMB 400 4278502 YP_749996.1 CDS Sfri_1305 NC_008345.1 1552114 1552728 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: syn:slr1627 hypothetical protein; lysine exporter protein LysE/YggA complement(1552114..1552728) Shewanella frigidimarina NCIMB 400 4278503 YP_749997.1 CDS Sfri_1306 NC_008345.1 1552976 1553446 D PFAM: DTW domain containing protein; KEGG: cps:CPS_2423 hypothetical protein; DTW domain-containing protein 1552976..1553446 Shewanella frigidimarina NCIMB 400 4277368 YP_749998.1 CDS Sfri_1307 NC_008345.1 1553519 1556182 R PFAM: glycoside hydrolase, family 3 domain protein; PA14 domain protein; KEGG: sde:Sde_2674 ribosome-binding factor A; Beta-glucosidase complement(1553519..1556182) Shewanella frigidimarina NCIMB 400 4277369 YP_749999.1 CDS Sfri_1308 NC_008345.1 1556198 1556959 R KEGG: sde:Sde_1104 hypothetical protein; hypothetical protein complement(1556198..1556959) Shewanella frigidimarina NCIMB 400 4277370 YP_750000.1 CDS Sfri_1309 NC_008345.1 1556969 1558456 R PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sde:Sde_1104 hypothetical protein; tryptophan halogenase complement(1556969..1558456) Shewanella frigidimarina NCIMB 400 4277371 YP_750001.1 CDS Sfri_1310 NC_008345.1 1558499 1559518 R SMART: transcription factor jumonji, jmjC domain protein; KEGG: sde:Sde_2829 PASs1-related protein; transcription factor jumonji domain-containing protein complement(1558499..1559518) Shewanella frigidimarina NCIMB 400 4277372 YP_750002.1 CDS Sfri_1311 NC_008345.1 1559524 1560246 R PFAM: SapC family protein; KEGG: sde:Sde_2830 SapC related protein; SapC family protein complement(1559524..1560246) Shewanella frigidimarina NCIMB 400 4277373 YP_750003.1 CDS Sfri_1312 NC_008345.1 1560357 1561934 R PFAM: tryptophan halogenase; KEGG: cps:CPS_3699 putative tryptophan halogenase; tryptophan halogenase complement(1560357..1561934) Shewanella frigidimarina NCIMB 400 4277374 YP_750004.1 CDS Sfri_1313 NC_008345.1 1562246 1565182 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcv:XCV4138 TonB-dependent outer membrane receptor; TonB-dependent receptor, plug complement(1562246..1565182) Shewanella frigidimarina NCIMB 400 4277375 YP_750005.1 CDS Sfri_1314 NC_008345.1 1565677 1566735 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cps:CPS_3709 galactose operon repressor; transcriptional regulator, LacI family protein complement(1565677..1566735) Shewanella frigidimarina NCIMB 400 4277376 YP_750006.1 CDS Sfri_1315 NC_008345.1 1566740 1568068 R TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3732 sugar:cation symporter family protein; sugar (glycoside-Pentoside-hexuronide) transporter complement(1566740..1568068) Shewanella frigidimarina NCIMB 400 4277377 YP_750007.1 CDS Sfri_1316 NC_008345.1 1568160 1569491 R PFAM: glycoside hydrolase, family 1; KEGG: cps:CPS_3706 beta-glucosidase; Beta-glucosidase complement(1568160..1569491) Shewanella frigidimarina NCIMB 400 4277378 YP_750008.1 CDS Sfri_1317 NC_008345.1 1569874 1571181 D TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3705 glucose/galactose transporter family protein; glucose/galactose transporter 1569874..1571181 Shewanella frigidimarina NCIMB 400 4277379 YP_750009.1 CDS Sfri_1318 NC_008345.1 1571191 1573833 D PFAM: glycoside hydrolase, family 3 domain protein; KEGG: sde:Sde_0245 beta-glucosidase; Beta-glucosidase 1571191..1573833 Shewanella frigidimarina NCIMB 400 4277380 YP_750010.1 CDS Sfri_1319 NC_008345.1 1573973 1575049 D PFAM: glycoside hydrolase, family 16; KEGG: vvy:VVA0140 beta-glucanase; glucan endo-1,3-beta-D-glucosidase 1573973..1575049 Shewanella frigidimarina NCIMB 400 4277381 YP_750011.1 CDS Sfri_1320 NC_008345.1 1575452 1576252 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: son:SO1655 cysQ protein; 3'(2'),5'-bisphosphate nucleotidase 1575452..1576252 Shewanella frigidimarina NCIMB 400 4277382 YP_750012.1 CDS Sfri_1321 NC_008345.1 1576326 1577231 D catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 1576326..1577231 Shewanella frigidimarina NCIMB 400 4277383 YP_750013.1 CDS Sfri_1322 NC_008345.1 1577397 1578155 D PFAM: protein of unknown function DUF218; KEGG: son:SO1657 hypothetical protein; hypothetical protein 1577397..1578155 Shewanella frigidimarina NCIMB 400 4277384 YP_750014.1 CDS Sfri_1323 NC_008345.1 1578245 1578940 D KEGG: son:SO1658 hypothetical protein; hypothetical protein 1578245..1578940 Shewanella frigidimarina NCIMB 400 4277997 YP_750015.1 CDS Sfri_1324 NC_008345.1 1578972 1579385 D PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: son:SO0883 hypothetical protein; glutathione-dependent formaldehyde-activating protein 1578972..1579385 Shewanella frigidimarina NCIMB 400 4277998 YP_750016.1 CDS Sfri_1325 NC_008345.1 1579382 1579741 R PFAM: protein of unknown function DUF583; KEGG: son:SO1662 hypothetical Ccm2-related protein; hypothetical protein complement(1579382..1579741) Shewanella frigidimarina NCIMB 400 4277999 YP_750017.1 CDS Sfri_1326 NC_008345.1 1579866 1580351 R TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1663 ferredoxin-type protein NapF; ferredoxin-type protein NapF complement(1579866..1580351) Shewanella frigidimarina NCIMB 400 4278000 YP_750018.1 CDS Sfri_1327 NC_008345.1 1580674 1581699 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO1664 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(1580674..1581699) Shewanella frigidimarina NCIMB 400 4278001 YP_750019.1 CDS phhA NC_008345.1 1582052 1582849 D phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 1582052..1582849 Shewanella frigidimarina NCIMB 400 4278002 YP_750020.1 CDS phhB NC_008345.1 1582923 1583261 D 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 1582923..1583261 Shewanella frigidimarina NCIMB 400 4278003 YP_750021.1 CDS Sfri_1330 NC_008345.1 1583426 1584964 D PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: son:SO1669 transcriptional regulatory protein TyrR; transcriptional regulator TyrR 1583426..1584964 Shewanella frigidimarina NCIMB 400 4278004 YP_750022.1 CDS Sfri_1331 NC_008345.1 1585202 1586188 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1670 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase 1585202..1586188 Shewanella frigidimarina NCIMB 400 4278005 YP_750023.1 CDS Sfri_1332 NC_008345.1 1586287 1586937 D TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO1671 glutathione S-transferase family protein; maleylacetoacetate isomerase 1586287..1586937 Shewanella frigidimarina NCIMB 400 4278006 YP_750024.1 CDS Sfri_1333 NC_008345.1 1587002 1587604 D PFAM: protein of unknown function DUF925; KEGG: son:SO1672 hypothetical protein; hypothetical protein 1587002..1587604 Shewanella frigidimarina NCIMB 400 4278007 YP_750025.1 CDS Sfri_1334 NC_008345.1 1587851 1588498 D receptor for colicin S4; outer membrane protein W 1587851..1588498 Shewanella frigidimarina NCIMB 400 4278008 YP_750026.1 CDS Sfri_1335 NC_008345.1 1588578 1589321 R KEGG: son:SO1674 short chain dehydrogenase family protein; short chain dehydrogenase family protein complement(1588578..1589321) Shewanella frigidimarina NCIMB 400 4278009 YP_750027.1 CDS Sfri_1336 NC_008345.1 1589683 1590627 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 1589683..1590627 Shewanella frigidimarina NCIMB 400 4278010 YP_750028.1 CDS Sfri_1337 NC_008345.1 1590741 1592648 D KEGG: bba:Bd3766 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 1590741..1592648 Shewanella frigidimarina NCIMB 400 4278011 YP_750029.1 CDS Sfri_1338 NC_008345.1 1592959 1594149 D KEGG: son:SO1677 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 1592959..1594149 Shewanella frigidimarina NCIMB 400 4278012 YP_750030.1 CDS Sfri_1339 NC_008345.1 1594314 1595807 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: son:SO1678 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1594314..1595807 Shewanella frigidimarina NCIMB 400 4278013 YP_750031.1 CDS Sfri_1340 NC_008345.1 1595973 1597130 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO1679 acyl-CoA dehydrogenase family protein; butyryl-CoA dehydrogenase 1595973..1597130 Shewanella frigidimarina NCIMB 400 4278014 YP_750032.1 CDS Sfri_1341 NC_008345.1 1597181 1597963 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1597181..1597963 Shewanella frigidimarina NCIMB 400 4277875 YP_750033.1 CDS Sfri_1342 NC_008345.1 1597963 1599081 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO1681 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 1597963..1599081 Shewanella frigidimarina NCIMB 400 4277876 YP_750034.1 CDS Sfri_1343 NC_008345.1 1599096 1599995 D KEGG: son:SO1682 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 1599096..1599995 Shewanella frigidimarina NCIMB 400 4277877 YP_750035.1 CDS fabG NC_008345.1 1600008 1600766 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1600008..1600766 Shewanella frigidimarina NCIMB 400 4277878 YP_750036.1 CDS Sfri_1345 NC_008345.1 1600968 1601174 D KEGG: son:SO1685 hypothetical protein; hypothetical protein 1600968..1601174 Shewanella frigidimarina NCIMB 400 4277879 YP_750037.1 CDS Sfri_1346 NC_008345.1 1601182 1602126 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: pha:PSHAa1329 hypothetical protein; hypothetical protein 1601182..1602126 Shewanella frigidimarina NCIMB 400 4277880 YP_750038.1 CDS Sfri_1347 NC_008345.1 1602228 1603148 D KEGG: vpa:VPA0405 hypothetical protein; hypothetical protein 1602228..1603148 Shewanella frigidimarina NCIMB 400 4277881 YP_750039.1 CDS Sfri_1348 NC_008345.1 1603644 1604594 D hypothetical protein 1603644..1604594 Shewanella frigidimarina NCIMB 400 4277882 YP_750040.1 CDS Sfri_1349 NC_008345.1 1605047 1606615 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1690 ABC transporter, ATP-binding protein; ABC transporter 1605047..1606615 Shewanella frigidimarina NCIMB 400 4277883 YP_750041.1 CDS Sfri_1350 NC_008345.1 1606744 1607139 D KEGG: son:SO1702 hypothetical protein; hypothetical protein 1606744..1607139 Shewanella frigidimarina NCIMB 400 4277884 YP_750042.1 CDS Sfri_1351 NC_008345.1 1607166 1607972 D PFAM: alpha/beta hydrolase fold; KEGG: cgb:cg1295 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily); alpha/beta hydrolase 1607166..1607972 Shewanella frigidimarina NCIMB 400 4277885 YP_750043.1 CDS Sfri_1352 NC_008345.1 1608270 1610276 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: cps:CPS_1937 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1608270..1610276 Shewanella frigidimarina NCIMB 400 4277886 YP_750044.1 CDS Sfri_1353 NC_008345.1 1610738 1611280 R PFAM: protein of unknown function DUF1415; KEGG: son:SO1715 hypothetical protein; hypothetical protein complement(1610738..1611280) Shewanella frigidimarina NCIMB 400 4277887 YP_750045.1 CDS Sfri_1354 NC_008345.1 1611310 1611915 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO1716 transporter, LysE family; lysine exporter protein LysE/YggA complement(1611310..1611915) Shewanella frigidimarina NCIMB 400 4277888 YP_750046.1 CDS Sfri_1355 NC_008345.1 1612094 1612912 R KEGG: son:SO1718 hypothetical protein; hypothetical protein complement(1612094..1612912) Shewanella frigidimarina NCIMB 400 4277889 YP_750047.1 CDS Sfri_1356 NC_008345.1 1613007 1613513 R PFAM: amino acid-binding ACT domain protein; KEGG: son:SO1722 ACT domain protein; amino acid-binding ACT domain-containing protein complement(1613007..1613513) Shewanella frigidimarina NCIMB 400 4277890 YP_750048.1 CDS Sfri_1357 NC_008345.1 1613710 1615965 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1723 phosphate ABC transporter, permease protein, putative; binding-protein-dependent transport system inner membrane protein 1613710..1615965 Shewanella frigidimarina NCIMB 400 4277891 YP_750049.1 CDS Sfri_1358 NC_008345.1 1616024 1617685 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1724 phosphate ABC transporter, permease protein, putative; phosphate ABC transporter permease 1616024..1617685 Shewanella frigidimarina NCIMB 400 4276965 YP_750050.1 CDS Sfri_1359 NC_008345.1 1617712 1618530 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1617712..1618530 Shewanella frigidimarina NCIMB 400 4276966 YP_750051.1 CDS Sfri_1360 NC_008345.1 1618588 1619283 D regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 1618588..1619283 Shewanella frigidimarina NCIMB 400 4276967 YP_750052.1 CDS Sfri_1361 NC_008345.1 1619423 1620004 D KEGG: son:SO1736 hypothetical protein; hypothetical protein 1619423..1620004 Shewanella frigidimarina NCIMB 400 4276968 YP_750053.1 CDS Sfri_1362 NC_008345.1 1620297 1620668 D SMART: HNH nuclease; KEGG: son:SO1738 hypothetical protein; hypothetical protein 1620297..1620668 Shewanella frigidimarina NCIMB 400 4276969 YP_750054.1 CDS Sfri_1363 NC_008345.1 1621144 1621371 R PFAM: protein of unknown function DUF1289; KEGG: son:SO1739 hypothetical protein; hypothetical protein complement(1621144..1621371) Shewanella frigidimarina NCIMB 400 4276970 YP_750055.1 CDS Sfri_1364 NC_008345.1 1621451 1622767 D KEGG: son:SO1741 hypothetical protein; hypothetical protein 1621451..1622767 Shewanella frigidimarina NCIMB 400 4276971 YP_750056.1 CDS Sfri_1365 NC_008345.1 1623023 1624072 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1623023..1624072 Shewanella frigidimarina NCIMB 400 4276972 YP_750057.1 CDS Sfri_1366 NC_008345.1 1624131 1625006 D PFAM: alpha/beta hydrolase fold; KEGG: son:SO1743 hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase 1624131..1625006 Shewanella frigidimarina NCIMB 400 4276973 YP_750058.1 CDS Sfri_1367 NC_008345.1 1625129 1626823 D Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 1625129..1626823 Shewanella frigidimarina NCIMB 400 4276974 YP_750059.1 CDS Sfri_1368 NC_008345.1 1626857 1627906 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: ppr:PBPRA1465 steroid dehydrogenase; 3-beta hydroxysteroid dehydrogenase/isomerase 1626857..1627906 Shewanella frigidimarina NCIMB 400 4276975 YP_750060.1 CDS Sfri_1369 NC_008345.1 1628128 1629312 D KEGG: son:SO1812 methionine gamma-lyase; TIGRFAM: methionine gamma-lyase; PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; methionine gamma-lyase 1628128..1629312 Shewanella frigidimarina NCIMB 400 4276976 YP_750061.1 CDS Sfri_1370 NC_008345.1 1629729 1630121 R hypothetical protein complement(1629729..1630121) Shewanella frigidimarina NCIMB 400 4276977 YP_750062.1 CDS Sfri_1371 NC_008345.1 1630121 1632211 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: pha:PSHAa1795 hypothetical protein; diguanylate cyclase/phosphodiesterase complement(1630121..1632211) Shewanella frigidimarina NCIMB 400 4276978 YP_750063.1 CDS Sfri_1372 NC_008345.1 1632239 1632841 R KEGG: pha:PSHAa1794 hypothetical protein; hypothetical protein complement(1632239..1632841) Shewanella frigidimarina NCIMB 400 4276979 YP_750064.1 CDS Sfri_1373 NC_008345.1 1634326 1635492 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: ppr:PBPRA2675 putative nucleotide sugar dehydrogenase; UDP-glucose 6-dehydrogenase 1634326..1635492 Shewanella frigidimarina NCIMB 400 4276980 YP_750065.1 CDS Sfri_1374 NC_008345.1 1635522 1636535 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: ppr:PBPRA0207 putative nucleotide sugar epimerase; NAD-dependent epimerase/dehydratase 1635522..1636535 Shewanella frigidimarina NCIMB 400 4276981 YP_750066.1 CDS Sfri_1375 NC_008345.1 1636544 1637347 D TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: hch:HCH_04683 glycosyltransferase; WecB/TagA/CpsF family glycosyl transferase 1636544..1637347 Shewanella frigidimarina NCIMB 400 4276982 YP_750067.1 CDS Sfri_1376 NC_008345.1 1637500 1638606 D PFAM: glycosyl transferase, group 1; KEGG: pfo:Pfl_2819 glycosyl transferase, group 1; group 1 glycosyl transferase 1637500..1638606 Shewanella frigidimarina NCIMB 400 4277000 YP_750068.1 CDS Sfri_1377 NC_008345.1 1638606 1639712 D PFAM: glycosyl transferase, group 1; KEGG: hch:HCH_04684 glycosyltransferase; group 1 glycosyl transferase 1638606..1639712 Shewanella frigidimarina NCIMB 400 4277001 YP_750069.1 CDS Sfri_1378 NC_008345.1 1639702 1640952 D KEGG: pfo:Pfl_2821 O-antigen polymerase; O-antigen polymerase 1639702..1640952 Shewanella frigidimarina NCIMB 400 4277002 YP_750070.1 CDS Sfri_1379 NC_008345.1 1640999 1641892 D PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl_2822 glycosyl transferase, family 2; glycosyl transferase family protein 1640999..1641892 Shewanella frigidimarina NCIMB 400 4277003 YP_750071.1 CDS Sfri_1380 NC_008345.1 1641894 1643309 D PFAM: polysaccharide biosynthesis protein; KEGG: pfo:Pfl_2823 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1641894..1643309 Shewanella frigidimarina NCIMB 400 4277004 YP_750072.1 CDS Sfri_1382 NC_008345.1 1644675 1646075 D PFAM: sugar transferase; KEGG: pha:PSHAa1783 UDP-glucose lipid carrier transferase; sugar transferase 1644675..1646075 Shewanella frigidimarina NCIMB 400 4277005 YP_750073.1 CDS Sfri_1383 NC_008345.1 1646576 1647787 D KEGG: pha:PSHAa1782 hypothetical protein; hypothetical protein 1646576..1647787 Shewanella frigidimarina NCIMB 400 4277006 YP_750074.1 CDS Sfri_1384 NC_008345.1 1647795 1648331 D PFAM: polysaccharide export protein; KEGG: pha:PSHAa1781 polysaccharide export-related protein; polysaccharide export protein 1647795..1648331 Shewanella frigidimarina NCIMB 400 4277007 YP_750075.1 CDS Sfri_1385 NC_008345.1 1648331 1650601 D PFAM: lipopolysaccharide biosynthesis; KEGG: pha:PSHAa1780 exopolysaccharide biosynthesis protein; hypothetical protein 1648331..1650601 Shewanella frigidimarina NCIMB 400 4277008 YP_750076.1 CDS Sfri_1386 NC_008345.1 1650598 1651335 D PFAM: PHP C-terminal domain protein; KEGG: pha:PSHAa1779 capsular polysaccharide biosynthesis, CapC; phosphotransferase domain-containing protein 1650598..1651335 Shewanella frigidimarina NCIMB 400 4277009 YP_750077.1 CDS Sfri_1387 NC_008345.1 1651335 1652033 D KEGG: pha:PSHAa1778 hypothetical protein; hypothetical protein 1651335..1652033 Shewanella frigidimarina NCIMB 400 4277010 YP_750078.1 CDS Sfri_1388 NC_008345.1 1652033 1653391 D PFAM: O-antigen polymerase; KEGG: pha:PSHAa1797 hypothetical protein; O-antigen polymerase 1652033..1653391 Shewanella frigidimarina NCIMB 400 4277011 YP_750079.1 CDS Sfri_1389 NC_008345.1 1653825 1654715 D KEGG: ppr:PBPRA2674 putative UTP-glucose-1-phosphateuridylyltransferase, galU; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 1653825..1654715 Shewanella frigidimarina NCIMB 400 4277012 YP_750080.1 CDS Sfri_1390 NC_008345.1 1655505 1657598 R PFAM: FAD dependent oxidoreductase; KEGG: son:SO3073 hypothetical protein; FAD dependent oxidoreductase complement(1655505..1657598) Shewanella frigidimarina NCIMB 400 4277013 YP_750081.1 CDS Sfri_1391 NC_008345.1 1657707 1658945 D PFAM: beta-ketoacyl synthase; KEGG: son:SO3072 3-oxoacyl-(acyl-carrier-protein) synthase I; beta-ketoacyl synthase 1657707..1658945 Shewanella frigidimarina NCIMB 400 4277014 YP_750082.1 CDS Sfri_1392 NC_008345.1 1659372 1660508 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO3071 erythronate-4-phosphate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 1659372..1660508 Shewanella frigidimarina NCIMB 400 4277015 YP_750083.1 CDS Sfri_1393 NC_008345.1 1660688 1661704 D KEGG: son:SO3070 aspartate semialdehyde dehydrogenese; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; aspartate-semialdehyde dehydrogenase 1660688..1661704 Shewanella frigidimarina NCIMB 400 4277016 YP_750084.1 CDS Sfri_1394 NC_008345.1 1661995 1666221 D KEGG: son:SO3069 putative membrane protein; ATPase 1661995..1666221 Shewanella frigidimarina NCIMB 400 4277087 YP_750085.1 CDS truA NC_008345.1 1666350 1667135 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1666350..1667135 Shewanella frigidimarina NCIMB 400 4277088 YP_750086.1 CDS Sfri_1396 NC_008345.1 1667253 1668530 D TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO3067 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1667253..1668530 Shewanella frigidimarina NCIMB 400 4277089 YP_750087.1 CDS Sfri_1397 NC_008345.1 1668602 1669228 D PFAM: Sporulation domain protein; KEGG: son:SO3066 DedD protein; sporulation domain-containing protein 1668602..1669228 Shewanella frigidimarina NCIMB 400 4277090 YP_750088.1 CDS Sfri_1398 NC_008345.1 1669381 1669869 D PFAM: Colicin V production protein; KEGG: son:SO3065 colicin V production protein; colicin V production protein 1669381..1669869 Shewanella frigidimarina NCIMB 400 4277091 YP_750089.1 CDS Sfri_1399 NC_008345.1 1669904 1671418 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1669904..1671418 Shewanella frigidimarina NCIMB 400 4277092 YP_750090.1 CDS Sfri_1400 NC_008345.1 1671977 1672681 R KEGG: cps:CPS_2668 conserved hypothetical protein; hypothetical protein complement(1671977..1672681) Shewanella frigidimarina NCIMB 400 4277093 YP_750091.1 CDS Sfri_1401 NC_008345.1 1672852 1674813 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1672852..1674813 Shewanella frigidimarina NCIMB 400 4277094 YP_750092.1 CDS Sfri_1402 NC_008345.1 1674982 1675575 D KEGG: pha:PSHAa1583 peptide methionine sulfoxide reductase MsrA 2 (protein-methionine-S-oxide reductase 2) (peptide Met(O) reductase 2); TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 1674982..1675575 Shewanella frigidimarina NCIMB 400 4277095 YP_750093.1 CDS Sfri_1403 NC_008345.1 1675908 1676066 D KEGG: cvi:CV3595 hypothetical protein; hypothetical protein 1675908..1676066 Shewanella frigidimarina NCIMB 400 4277096 YP_750094.1 CDS Sfri_1404 NC_008345.1 1676179 1677114 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_1392 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(1676179..1677114) Shewanella frigidimarina NCIMB 400 4277097 YP_750095.1 CDS Sfri_1405 NC_008345.1 1677237 1678262 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cps:CPS_1391 oxidoreductase, zinc-binding; alcohol dehydrogenase 1677237..1678262 Shewanella frigidimarina NCIMB 400 4277098 YP_750096.1 CDS Sfri_1406 NC_008345.1 1678323 1678613 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rba:RB1487 hypothetical protein; antibiotic biosynthesis monooxygenase 1678323..1678613 Shewanella frigidimarina NCIMB 400 4277099 YP_750097.1 CDS Sfri_1407 NC_008345.1 1678752 1680221 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VPA0595 ATP-binding component of molybdate transport system; ABC transporter 1678752..1680221 Shewanella frigidimarina NCIMB 400 4277100 YP_750098.1 CDS Sfri_1408 NC_008345.1 1680444 1680989 D PFAM: Redoxin domain protein; KEGG: tbd:Tbd_0156 hypothetical protein; redoxin domain-containing protein 1680444..1680989 Shewanella frigidimarina NCIMB 400 4277101 YP_750099.1 CDS Sfri_1409 NC_008345.1 1681272 1681928 D PFAM: nitroreductase; KEGG: pha:PSHAa1234 major NAD(P)H-flavin oxidoreductase; nitroreductase 1681272..1681928 Shewanella frigidimarina NCIMB 400 4277102 YP_750100.1 CDS Sfri_1410 NC_008345.1 1682047 1683411 R PFAM: alpha/beta hydrolase fold; KEGG: son:SO3055 proline iminopeptidase; alpha/beta hydrolase complement(1682047..1683411) Shewanella frigidimarina NCIMB 400 4277103 YP_750101.1 CDS Sfri_1411 NC_008345.1 1683518 1684162 D PFAM: beta-lactamase domain protein; KEGG: son:SO3054 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 1683518..1684162 Shewanella frigidimarina NCIMB 400 4277104 YP_750102.1 CDS Sfri_1412 NC_008345.1 1684286 1685302 D PFAM: protein of unknown function DUF182; KEGG: son:SO3051 hypothetical xanthine dehydrogenase accessory factor; hypothetical protein 1684286..1685302 Shewanella frigidimarina NCIMB 400 4277910 YP_750103.1 CDS Sfri_1413 NC_008345.1 1685316 1685924 D KEGG: son:SO3050 hypothetical protein; hypothetical protein 1685316..1685924 Shewanella frigidimarina NCIMB 400 4277911 YP_750104.1 CDS Sfri_1414 NC_008345.1 1685927 1686379 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: son:SO3049 isoquinoline 1-oxidoreductase, alpha subunit, putative; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1685927..1686379 Shewanella frigidimarina NCIMB 400 4277912 YP_750105.1 CDS Sfri_1415 NC_008345.1 1686382 1688625 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: son:SO3048 isoquinoline 1-oxidoreductase, beta subunit, putative; twin-arginine translocation pathway signal 1686382..1688625 Shewanella frigidimarina NCIMB 400 4277913 YP_750106.1 CDS Sfri_1416 NC_008345.1 1688863 1690308 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vch:VCA0773 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1688863..1690308 Shewanella frigidimarina NCIMB 400 4277914 YP_750107.1 CDS Sfri_1417 NC_008345.1 1690660 1691241 D KEGG: cps:CPS_0912 hypothetical protein; hypothetical protein 1690660..1691241 Shewanella frigidimarina NCIMB 400 4277915 YP_750108.1 CDS Sfri_1418 NC_008345.1 1691244 1693577 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: cps:CPS_0913 sensory box sensor/GGDEF/EAL domain protein; diguanylate cyclase/phosphodiesterase 1691244..1693577 Shewanella frigidimarina NCIMB 400 4277916 YP_750109.1 CDS Sfri_1419 NC_008345.1 1693613 1694866 D KEGG: cps:CPS_0914 hypothetical protein; hypothetical protein 1693613..1694866 Shewanella frigidimarina NCIMB 400 4277917 YP_750110.1 CDS Sfri_1420 NC_008345.1 1695133 1695939 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(1695133..1695939) Shewanella frigidimarina NCIMB 400 4277918 YP_750111.1 CDS Sfri_1421 NC_008345.1 1695939 1696238 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(1695939..1696238) Shewanella frigidimarina NCIMB 400 4277919 YP_750112.1 CDS Sfri_1422 NC_008345.1 1696274 1696825 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(1696274..1696825) Shewanella frigidimarina NCIMB 400 4277920 YP_750113.1 CDS Sfri_1423 NC_008345.1 1696946 1697839 R KEGG: hch:HCH_00813 hypothetical protein; hypothetical protein complement(1696946..1697839) Shewanella frigidimarina NCIMB 400 4277921 YP_750114.1 CDS trpA NC_008345.1 1697930 1698733 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(1697930..1698733) Shewanella frigidimarina NCIMB 400 4277922 YP_750115.1 CDS Sfri_1425 NC_008345.1 1698726 1699937 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(1698726..1699937) Shewanella frigidimarina NCIMB 400 4277923 YP_750116.1 CDS Sfri_1426 NC_008345.1 1699995 1701398 R Phosphoribosylanthranilate isomerase; monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase complement(1699995..1701398) Shewanella frigidimarina NCIMB 400 4277924 YP_750117.1 CDS trpD NC_008345.1 1701391 1702434 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(1701391..1702434) Shewanella frigidimarina NCIMB 400 4277925 YP_750118.1 CDS Sfri_1428 NC_008345.1 1702434 1703069 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(1702434..1703069) Shewanella frigidimarina NCIMB 400 4277926 YP_750119.1 CDS Sfri_1429 NC_008345.1 1703066 1704637 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(1703066..1704637) Shewanella frigidimarina NCIMB 400 4277246 YP_750120.1 CDS Sfri_1430 NC_008345.1 1705090 1705950 D PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: son:SO3017 TrpH family protein; phosphotransferase domain-containing protein 1705090..1705950 Shewanella frigidimarina NCIMB 400 4277247 YP_750121.1 CDS Sfri_1431 NC_008345.1 1705947 1706567 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain protein; KEGG: son:SO3016 Sua5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 1705947..1706567 Shewanella frigidimarina NCIMB 400 4277248 YP_750122.1 CDS Sfri_1432 NC_008345.1 1706607 1707395 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: son:SO3015 putative segregation and condensation protein A; chromosome segregation and condensation protein ScpA 1706607..1707395 Shewanella frigidimarina NCIMB 400 4277249 YP_750123.1 CDS Sfri_1433 NC_008345.1 1707418 1708155 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: son:SO3014 putative segregation and condensation protein B; putative transcriptional regulator 1707418..1708155 Shewanella frigidimarina NCIMB 400 4277250 YP_750124.1 CDS Sfri_1434 NC_008345.1 1708152 1709138 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0701 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(1708152..1709138) Shewanella frigidimarina NCIMB 400 4277251 YP_750125.1 CDS Sfri_1435 NC_008345.1 1709270 1710349 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRA2319 hypothetical membrane-fusion protein; RND family efflux transporter MFP subunit 1709270..1710349 Shewanella frigidimarina NCIMB 400 4277252 YP_750126.1 CDS Sfri_1436 NC_008345.1 1710353 1713418 D PFAM: acriflavin resistance protein; KEGG: ppr:PBPRA2318 hypothetical transporter, AcrB/D/F family; acriflavin resistance protein 1710353..1713418 Shewanella frigidimarina NCIMB 400 4277253 YP_750127.1 CDS Sfri_1437 NC_008345.1 1713690 1714562 D TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: eca:ECA2291 putative RNA pseudouridylate synthase; pseudouridine synthase, Rsu 1713690..1714562 Shewanella frigidimarina NCIMB 400 4277254 YP_750128.1 CDS Sfri_1438 NC_008345.1 1714757 1715086 D hypothetical protein 1714757..1715086 Shewanella frigidimarina NCIMB 400 4277255 YP_750129.1 CDS Sfri_1439 NC_008345.1 1715974 1716249 R PFAM: histone family protein DNA-binding protein; KEGG: son:SO1863 DNA-binding protein, HU family; histone family protein DNA-binding protein complement(1715974..1716249) Shewanella frigidimarina NCIMB 400 4277256 YP_750130.1 CDS Sfri_1440 NC_008345.1 1716541 1717962 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO2109 hypothetical protein; peptidoglycan binding domain-containing protein 1716541..1717962 Shewanella frigidimarina NCIMB 400 4277257 YP_750131.1 CDS Sfri_1441 NC_008345.1 1718214 1718765 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; protein of unknown function DUF882; Peptidase M15A; KEGG: son:SO2110 hypothetical protein; twin-arginine translocation pathway signal 1718214..1718765 Shewanella frigidimarina NCIMB 400 4277258 YP_750132.1 CDS Sfri_1442 NC_008345.1 1719245 1719532 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1719245..1719532 Shewanella frigidimarina NCIMB 400 4277259 YP_750133.1 CDS Sfri_1443 NC_008345.1 1719680 1723594 R PFAM: protein of unknown function DUF490; KEGG: son:SO2113 hypothetical protein; hypothetical protein complement(1719680..1723594) Shewanella frigidimarina NCIMB 400 4277260 YP_750134.1 CDS Sfri_1444 NC_008345.1 1723591 1725381 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO2114 hypothetical protein; surface antigen (D15) complement(1723591..1725381) Shewanella frigidimarina NCIMB 400 4277261 YP_750135.1 CDS Sfri_1445 NC_008345.1 1725570 1726604 D PFAM: peptidase T2, asparaginase 2; KEGG: son:SO2115 asparaginase family protein; peptidase T2, asparaginase 2 1725570..1726604 Shewanella frigidimarina NCIMB 400 4277262 YP_750136.1 CDS Sfri_1446 NC_008345.1 1726776 1727192 D PFAM: CBS domain containing protein; KEGG: son:SO2228 CBS domain protein; signal transduction protein 1726776..1727192 Shewanella frigidimarina NCIMB 400 4277263 YP_750137.1 CDS Sfri_1447 NC_008345.1 1727270 1731145 D KEGG: son:SO2229 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD/DEAH box helicase domain protein; ATP-dependent helicase HrpA 1727270..1731145 Shewanella frigidimarina NCIMB 400 4278451 YP_750138.1 CDS Sfri_1448 NC_008345.1 1732166 1732618 R KEGG: son:SO2917 hypothetical protein; hypothetical protein complement(1732166..1732618) Shewanella frigidimarina NCIMB 400 4278452 YP_750139.1 CDS Sfri_1449 NC_008345.1 1733168 1733947 R KEGG: son:SO2650 hypothetical protein; hypothetical protein complement(1733168..1733947) Shewanella frigidimarina NCIMB 400 4278453 YP_750140.1 CDS cysB NC_008345.1 1734337 1735314 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1734337..1735314 Shewanella frigidimarina NCIMB 400 4278454 YP_750141.1 CDS purN NC_008345.1 1735401 1736045 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(1735401..1736045) Shewanella frigidimarina NCIMB 400 4278455 YP_750142.1 CDS Sfri_1452 NC_008345.1 1736045 1737082 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(1736045..1737082) Shewanella frigidimarina NCIMB 400 4278456 YP_750143.1 CDS upp NC_008345.1 1737324 1737950 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1737324..1737950 Shewanella frigidimarina NCIMB 400 4278457 YP_750144.1 CDS Sfri_1454 NC_008345.1 1738083 1739411 R PFAM: Gluconate transporter; Citrate transporter; Na+/H+ antiporter NhaC; KEGG: son:SO2757 membrane protein, putative; Na+/H+ antiporter NhaC complement(1738083..1739411) Shewanella frigidimarina NCIMB 400 4278458 YP_750145.1 CDS Sfri_1455 NC_008345.1 1739795 1740400 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cps:CPS_3474 antioxidant, AhpC/Tsa family; alkyl hydroperoxide reductase 1739795..1740400 Shewanella frigidimarina NCIMB 400 4278459 YP_750146.1 CDS Sfri_1456 NC_008345.1 1740527 1741192 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1740527..1741192) Shewanella frigidimarina NCIMB 400 4278460 YP_750147.1 CDS Sfri_1457 NC_008345.1 1741380 1742249 D PFAM: OmpA/MotB domain protein; KEGG: cps:CPS_3471 sodium-type flagellar protein MotY; OmpA/MotB domain-containing protein 1741380..1742249 Shewanella frigidimarina NCIMB 400 4278461 YP_750148.1 CDS Sfri_1458 NC_008345.1 1743571 1743969 D TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: son:SO2752 conserved hypothetical protein TIGR00051; 4-hydroxybenzoyl-CoA thioesterase 1743571..1743969 Shewanella frigidimarina NCIMB 400 4278462 YP_750149.1 CDS Sfri_1459 NC_008345.1 1743959 1744648 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO2751 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 1743959..1744648 Shewanella frigidimarina NCIMB 400 4278463 YP_750150.1 CDS Sfri_1460 NC_008345.1 1744648 1745076 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO2750 tolr protein; biopolymer transport protein ExbD/TolR 1744648..1745076 Shewanella frigidimarina NCIMB 400 4278464 YP_750151.1 CDS Sfri_1461 NC_008345.1 1745077 1746039 D PFAM: TolA family protein; KEGG: son:SO2749 tolA protein; TolA family protein 1745077..1746039 Shewanella frigidimarina NCIMB 400 4278465 YP_750152.1 CDS tolB NC_008345.1 1746083 1747411 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1746083..1747411 Shewanella frigidimarina NCIMB 400 4278466 YP_750153.1 CDS Sfri_1463 NC_008345.1 1747435 1747971 D PFAM: OmpA/MotB domain protein; KEGG: son:SO2747 peptidoglycan-associated lipoprotein; OmpA/MotB domain-containing protein 1747435..1747971 Shewanella frigidimarina NCIMB 400 4278467 YP_750154.1 CDS Sfri_1464 NC_008345.1 1748027 1748764 D KEGG: son:SO2746 hypothetical protein; hypothetical protein 1748027..1748764 Shewanella frigidimarina NCIMB 400 4277560 YP_750155.1 CDS Sfri_1465 NC_008345.1 1750733 1751884 D KEGG: pha:PSHAa0696 hypothetical protein; hypothetical protein 1750733..1751884 Shewanella frigidimarina NCIMB 400 4277561 YP_750156.1 CDS grxA NC_008345.1 1751949 1752209 R functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin complement(1751949..1752209) Shewanella frigidimarina NCIMB 400 4277562 YP_750157.1 CDS Sfri_1467 NC_008345.1 1752289 1754040 R PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO2744 helicase; type III restriction enzyme, res subunit complement(1752289..1754040) Shewanella frigidimarina NCIMB 400 4277563 YP_750158.1 CDS Sfri_1468 NC_008345.1 1754284 1754685 D KEGG: cps:CPS_2494 hypothetical protein; hypothetical protein 1754284..1754685 Shewanella frigidimarina NCIMB 400 4277564 YP_750159.1 CDS Sfri_1469 NC_008345.1 1754799 1756751 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(1754799..1756751) Shewanella frigidimarina NCIMB 400 4277565 YP_750160.1 CDS Sfri_1470 NC_008345.1 1757008 1760430 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2742 sensor histidine kinase/response regulator; periplasmic sensor hybrid histidine kinase 1757008..1760430 Shewanella frigidimarina NCIMB 400 4277566 YP_750161.1 CDS Sfri_1471 NC_008345.1 1760460 1761062 D PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: pae:PA1655 probable glutathione S-transferase; glutathione S-transferase domain-containing protein 1760460..1761062 Shewanella frigidimarina NCIMB 400 4277567 YP_750162.1 CDS Sfri_1472 NC_008345.1 1761134 1761766 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ppr:PBPRA3127 putative lysine efflux permease; lysine exporter protein LysE/YggA complement(1761134..1761766) Shewanella frigidimarina NCIMB 400 4277568 YP_750163.1 CDS Sfri_1473 NC_008345.1 1761925 1762818 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 1761925..1762818 Shewanella frigidimarina NCIMB 400 4277569 YP_750164.1 CDS Sfri_1474 NC_008345.1 1762894 1764228 R TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: son:SO2741 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(1762894..1764228) Shewanella frigidimarina NCIMB 400 4277570 YP_750165.1 CDS Sfri_1475 NC_008345.1 1764343 1765395 D KEGG: son:SO2740 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 1764343..1765395 Shewanella frigidimarina NCIMB 400 4277571 YP_750166.1 CDS Sfri_1476 NC_008345.1 1765402 1766601 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aminotransferase, class I and II; aminotransferase class-III; KEGG: son:SO2739 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 1765402..1766601 Shewanella frigidimarina NCIMB 400 4277572 YP_750167.1 CDS Sfri_1477 NC_008345.1 1766622 1767386 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2738 biotin synthesis protein BioC; methyltransferase type 11 1766622..1767386 Shewanella frigidimarina NCIMB 400 4277573 YP_750168.1 CDS bioD NC_008345.1 1767391 1768101 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 1767391..1768101 Shewanella frigidimarina NCIMB 400 4277574 YP_750169.1 CDS Sfri_1479 NC_008345.1 1768204 1769229 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2197 GGDEF family protein; diguanylate cyclase complement(1768204..1769229) Shewanella frigidimarina NCIMB 400 4277575 YP_750170.1 CDS Sfri_1480 NC_008345.1 1769383 1770294 R KEGG: son:SO2199 hypothetical protein; hypothetical protein complement(1769383..1770294) Shewanella frigidimarina NCIMB 400 4277576 YP_750171.1 CDS Sfri_1481 NC_008345.1 1770741 1771169 R PFAM: protein of unknown function DUF413; KEGG: son:SO2201 hypothetical protein; hypothetical protein complement(1770741..1771169) Shewanella frigidimarina NCIMB 400 4277577 YP_750172.1 CDS Sfri_1482 NC_008345.1 1771278 1772132 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2202 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 1771278..1772132 Shewanella frigidimarina NCIMB 400 4278049 YP_750173.1 CDS Sfri_1483 NC_008345.1 1772150 1772521 R PFAM: diacylglycerol kinase; KEGG: son:SO2203 diacylglycerol kinase; diacylglycerol kinase complement(1772150..1772521) Shewanella frigidimarina NCIMB 400 4278050 YP_750174.1 CDS Sfri_1484 NC_008345.1 1772930 1773778 D catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 1772930..1773778 Shewanella frigidimarina NCIMB 400 4278051 YP_750175.1 CDS Sfri_1485 NC_008345.1 1773935 1774420 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: son:SO2208 phosphotyrosine protein phosphatase; protein tyrosine phosphatase 1773935..1774420 Shewanella frigidimarina NCIMB 400 4278052 YP_750176.1 CDS rbgA NC_008345.1 1774572 1775513 R essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase complement(1774572..1775513) Shewanella frigidimarina NCIMB 400 4278053 YP_750177.1 CDS Sfri_1487 NC_008345.1 1775644 1776483 R PFAM: 2OG-Fe(II) oxygenase; KEGG: son:SO2589 isopenicillin-N synthase; 2OG-Fe(II) oxygenase complement(1775644..1776483) Shewanella frigidimarina NCIMB 400 4278054 YP_750178.1 CDS Sfri_1488 NC_008345.1 1776646 1777563 D this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 1776646..1777563 Shewanella frigidimarina NCIMB 400 4278055 YP_750179.1 CDS Sfri_1490 NC_008345.1 1778819 1782193 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: son:SO2785 ribonuclease E; ribonuclease, Rne/Rng family protein complement(1778819..1782193) Shewanella frigidimarina NCIMB 400 4278056 YP_750180.1 CDS Sfri_1491 NC_008345.1 1782820 1783776 D TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sfx:S1170 pseudouridylate synthase; RluA family pseudouridine synthase 1782820..1783776 Shewanella frigidimarina NCIMB 400 4278057 YP_750181.1 CDS Sfri_1492 NC_008345.1 1783808 1784461 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pha:PSHAa1814 phosphoglycolate phosphatase, contains a phosphatase-like domain; HAD family hydrolase 1783808..1784461 Shewanella frigidimarina NCIMB 400 4278058 YP_750182.1 CDS Sfri_1493 NC_008345.1 1784646 1785266 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: vvy:VV1269 Maf-like protein; maf protein complement(1784646..1785266) Shewanella frigidimarina NCIMB 400 4278059 YP_750183.1 CDS Sfri_1494 NC_008345.1 1785514 1786038 D PFAM: protein of unknown function DUF177; KEGG: son:SO2781 hypothetical protein; hypothetical protein 1785514..1786038 Shewanella frigidimarina NCIMB 400 4278060 YP_750184.1 CDS rpmF NC_008345.1 1786057 1786227 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1786057..1786227 Shewanella frigidimarina NCIMB 400 4278061 YP_750185.1 CDS Sfri_1496 NC_008345.1 1786243 1787271 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1786243..1787271 Shewanella frigidimarina NCIMB 400 4278062 YP_750186.1 CDS Sfri_1497 NC_008345.1 1787280 1788239 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1787280..1788239 Shewanella frigidimarina NCIMB 400 4278063 YP_750187.1 CDS Sfri_1498 NC_008345.1 1788272 1789198 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: son:SO2777 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 1788272..1789198 Shewanella frigidimarina NCIMB 400 4278064 YP_750188.1 CDS Sfri_1499 NC_008345.1 1789209 1789955 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO2776 3-oxoacyl-[acyl-carrier protein] reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 1789209..1789955 Shewanella frigidimarina NCIMB 400 4278065 YP_750189.1 CDS acpP NC_008345.1 1790119 1790352 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1790119..1790352 Shewanella frigidimarina NCIMB 400 4277455 YP_750190.1 CDS Sfri_1501 NC_008345.1 1790515 1791753 D PFAM: beta-ketoacyl synthase; KEGG: son:SO2774 3-oxoacyl-(acyl-carrier-protein) synthase II; beta-ketoacyl synthase 1790515..1791753 Shewanella frigidimarina NCIMB 400 4277456 YP_750191.1 CDS Sfri_1502 NC_008345.1 1791894 1792382 D PFAM: thioesterase superfamily protein; KEGG: son:SO2772 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 1791894..1792382 Shewanella frigidimarina NCIMB 400 4277457 YP_750192.1 CDS Sfri_1503 NC_008345.1 1792396 1793271 D PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: son:SO2771 2-hydroxy-3-oxopropionate reductase; 2-hydroxy-3-oxopropionate reductase 1792396..1793271 Shewanella frigidimarina NCIMB 400 4277458 YP_750193.1 CDS Sfri_1504 NC_008345.1 1793665 1794000 D KEGG: son:SO2727 cytochrome c3; cytochrome c3 1793665..1794000 Shewanella frigidimarina NCIMB 400 4277459 YP_750194.1 CDS Sfri_1505 NC_008345.1 1794291 1797107 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: vpa:VPA1065 putative nitrate reductase, large subunit protein; molybdopterin oxidoreductase 1794291..1797107 Shewanella frigidimarina NCIMB 400 4277460 YP_750195.1 CDS Sfri_1506 NC_008345.1 1797107 1797991 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: vvy:VVA0956 uroporphyrinogen-III methylase; uroporphyrin-III C-methyltransferase 1797107..1797991 Shewanella frigidimarina NCIMB 400 4277461 YP_750196.1 CDS Sfri_1507 NC_008345.1 1797984 1799162 D PFAM: glycosyl transferase, family 3; KEGG: ppr:PBPRB0206 hypothetical protein; glycosyl transferase family protein 1797984..1799162 Shewanella frigidimarina NCIMB 400 4277462 YP_750197.1 CDS Sfri_1508 NC_008345.1 1799150 1799827 D PFAM: ANTAR domain protein; KEGG: tcx:Tcr_1151 response regulator receiver (CheY-like) and ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 1799150..1799827 Shewanella frigidimarina NCIMB 400 4277463 YP_750198.1 CDS Sfri_1509 NC_008345.1 1800064 1802667 D TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: vvu:VV20390 NAD(P)H-nitrite reductase; nitrite reductase (NAD(P)H) large subunit 1800064..1802667 Shewanella frigidimarina NCIMB 400 4277464 YP_750199.1 CDS Sfri_1510 NC_008345.1 1802664 1802990 D TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: ppr:PBPRA1427 putative nitrite reductase (NAD(P)H) smallsubunit; nitrite reductase (NAD(P)H) small subunit 1802664..1802990 Shewanella frigidimarina NCIMB 400 4277465 YP_750200.1 CDS Sfri_1511 NC_008345.1 1803001 1804467 D TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_4950 nitrate permease; nitrite transporter 1803001..1804467 Shewanella frigidimarina NCIMB 400 4277466 YP_750201.1 CDS Sfri_1512 NC_008345.1 1804524 1806314 D PFAM: protein kinase; SMART: tyrosine protein kinase; protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: hch:HCH_05817 serine/threonine protein kinase; serine/threonine protein kinase 1804524..1806314 Shewanella frigidimarina NCIMB 400 4277467 YP_750202.1 CDS Sfri_1513 NC_008345.1 1806827 1807360 D PFAM: Curlin associated repeat protein; KEGG: bur:Bcep18194_B2589 hypothetical protein; curlin-associated protein 1806827..1807360 Shewanella frigidimarina NCIMB 400 4277468 YP_750203.1 CDS Sfri_1514 NC_008345.1 1807402 1808955 D PFAM: Curlin associated repeat protein; KEGG: son:SO0865 hypothetical protein; curlin-associated protein 1807402..1808955 Shewanella frigidimarina NCIMB 400 4277469 YP_750204.1 CDS Sfri_1515 NC_008345.1 1809670 1810206 D PFAM: Curlin associated repeat protein; KEGG: ppu:PP3398 curli fiber surface-exposed nucleator CsgB, putative; curlin-associated protein 1809670..1810206 Shewanella frigidimarina NCIMB 400 4277470 YP_750205.1 CDS Sfri_1516 NC_008345.1 1810227 1811885 D PFAM: Curlin associated repeat protein; KEGG: pfo:Pfl_1996 curlin associated; curlin-associated protein 1810227..1811885 Shewanella frigidimarina NCIMB 400 4277471 YP_750206.1 CDS Sfri_1517 NC_008345.1 1812039 1812671 D PFAM: regulatory protein, LuxR; KEGG: son:SO2725 transcriptional regulator, LuxR family; transcriptional regulator, LuxR family protein 1812039..1812671 Shewanella frigidimarina NCIMB 400 4277472 YP_750207.1 CDS Sfri_1518 NC_008345.1 1812701 1813246 D KEGG: vfi:VF2407 CsgE-like protein; hypothetical protein 1812701..1813246 Shewanella frigidimarina NCIMB 400 4277473 YP_750208.1 CDS Sfri_1519 NC_008345.1 1813259 1813660 D KEGG: vfi:VF2406 curli production assembly/transport component CsgF precursor; curli production assembly/transport component CsgF precursor 1813259..1813660 Shewanella frigidimarina NCIMB 400 4277474 YP_750209.1 CDS Sfri_1520 NC_008345.1 1813663 1814514 D PFAM: Curli production assembly/transport component CsgG; KEGG: vfi:VF2405 curli production assembly/transport component CsgG precursor; curli production assembly/transport component CsgG 1813663..1814514 Shewanella frigidimarina NCIMB 400 4277475 YP_750210.1 CDS Sfri_1521 NC_008345.1 1814669 1816426 R PFAM: peptidase M61 domain protein; KEGG: son:SO2724 protease, putative; peptidase M61 domain-containing protein complement(1814669..1816426) Shewanella frigidimarina NCIMB 400 4277476 YP_750211.1 CDS Sfri_1522 NC_008345.1 1816630 1816983 D PFAM: histidine triad (HIT) protein; KEGG: son:SO2723 HIT family protein; histidine triad (HIT) protein 1816630..1816983 Shewanella frigidimarina NCIMB 400 4277477 YP_750212.1 CDS Sfri_1523 NC_008345.1 1816983 1817492 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO2722 hypothetical protein; hypothetical protein 1816983..1817492 Shewanella frigidimarina NCIMB 400 4277478 YP_750213.1 CDS Sfri_1524 NC_008345.1 1817489 1817956 D PFAM: thioesterase superfamily protein; KEGG: son:SO2721 hypothetical protein; thioesterase superfamily protein 1817489..1817956 Shewanella frigidimarina NCIMB 400 4277479 YP_750214.1 CDS Sfri_1525 NC_008345.1 1817994 1818386 D PFAM: protein of unknown function DUF1425; KEGG: son:SO2720 hypothetical protein; hypothetical protein 1817994..1818386 Shewanella frigidimarina NCIMB 400 4277480 YP_750215.1 CDS Sfri_1526 NC_008345.1 1818677 1820878 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2715 TonB-dependent receptor; TonB-dependent receptor 1818677..1820878 Shewanella frigidimarina NCIMB 400 4277481 YP_750216.1 CDS Sfri_1527 NC_008345.1 1820933 1821193 D KEGG: son:SO2714 hypothetical protein; hypothetical protein 1820933..1821193 Shewanella frigidimarina NCIMB 400 4277482 YP_750217.1 CDS Sfri_1528 NC_008345.1 1821199 1821909 D TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: son:SO2713 transporter, putative; nicotinamide mononucleotide transporter PnuC 1821199..1821909 Shewanella frigidimarina NCIMB 400 4277483 YP_750218.1 CDS Sfri_1529 NC_008345.1 1821946 1822944 D KEGG: son:SO2712 hypothetical protein; hypothetical protein 1821946..1822944 Shewanella frigidimarina NCIMB 400 4277484 YP_750219.1 CDS Sfri_1530 NC_008345.1 1823004 1823849 D KEGG: son:SO2711 hypothetical protein; hypothetical protein 1823004..1823849 Shewanella frigidimarina NCIMB 400 4277485 YP_750220.1 CDS Sfri_1531 NC_008345.1 1823942 1824535 D PFAM: DoxX family protein; KEGG: son:SO2710 hypothetical protein; DoxX family protein 1823942..1824535 Shewanella frigidimarina NCIMB 400 4277486 YP_750221.1 CDS Sfri_1532 NC_008345.1 1824694 1825242 D PFAM: nitroreductase; KEGG: son:SO2708 nitroreductase family protein; nitroreductase 1824694..1825242 Shewanella frigidimarina NCIMB 400 4277487 YP_750222.1 CDS Sfri_1533 NC_008345.1 1825323 1825523 R KEGG: sdn:Sden_2314 hypothetical protein; hypothetical protein complement(1825323..1825523) Shewanella frigidimarina NCIMB 400 4277488 YP_750223.1 CDS Sfri_1534 NC_008345.1 1825700 1826416 R PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain protein; KEGG: ppr:PBPRB1270 hypothetical protein; glutathione S-transferase domain-containing protein complement(1825700..1826416) Shewanella frigidimarina NCIMB 400 4277489 YP_750224.1 CDS Sfri_1535 NC_008345.1 1826654 1827706 D PFAM: Rhodanese domain protein; KEGG: son:SO2290 rhodanese domain protein; hypothetical protein 1826654..1827706 Shewanella frigidimarina NCIMB 400 4277771 YP_750225.1 CDS Sfri_1536 NC_008345.1 1827974 1828810 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ade:Adeh_3473 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(1827974..1828810) Shewanella frigidimarina NCIMB 400 4277772 YP_750226.1 CDS recR NC_008345.1 1829377 1829976 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1829377..1829976 Shewanella frigidimarina NCIMB 400 4277773 YP_750227.1 CDS Sfri_1538 NC_008345.1 1830256 1832169 D molecular chaperone; heat shock protein 90 1830256..1832169 Shewanella frigidimarina NCIMB 400 4277774 YP_750228.1 CDS Sfri_1539 NC_008345.1 1832236 1833099 D PFAM: Thioredoxin domain; KEGG: son:SO2017 putative thioredoxin-like protein; thioredoxin domain-containing protein 1832236..1833099 Shewanella frigidimarina NCIMB 400 4277775 YP_750229.1 CDS adk NC_008345.1 1833236 1833880 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1833236..1833880 Shewanella frigidimarina NCIMB 400 4277776 YP_750230.1 CDS Sfri_1541 NC_008345.1 1834479 1835783 D PFAM: PfkB domain protein; KEGG: son:SO2020 inosine-guanosine kinase; inosine kinase 1834479..1835783 Shewanella frigidimarina NCIMB 400 4277777 YP_750231.1 CDS nadE NC_008345.1 1835899 1836729 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1835899..1836729 Shewanella frigidimarina NCIMB 400 4277778 YP_750232.1 CDS Sfri_1543 NC_008345.1 1836734 1837264 R KEGG: son:SO2022 hypothetical protein; hypothetical protein complement(1836734..1837264) Shewanella frigidimarina NCIMB 400 4277779 YP_750233.1 CDS Sfri_1544 NC_008345.1 1837400 1838899 D KEGG: son:SO2024 hypothetical protein; lysophospholipase-like protein 1837400..1838899 Shewanella frigidimarina NCIMB 400 4277780 YP_750234.1 CDS Sfri_1545 NC_008345.1 1838889 1840994 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cps:CPS_4941 sensory box/GGDEF domain protein; diguanylate cyclase complement(1838889..1840994) Shewanella frigidimarina NCIMB 400 4277781 YP_750235.1 CDS Sfri_1546 NC_008345.1 1841418 1841684 D KEGG: son:SO2858 hypothetical protein; hypothetical protein 1841418..1841684 Shewanella frigidimarina NCIMB 400 4277782 YP_750236.1 CDS Sfri_1547 NC_008345.1 1841697 1843415 D PFAM: Na+/solute symporter; KEGG: son:SO2857 sodium/solute symporter family protein; Na+/solute symporter 1841697..1843415 Shewanella frigidimarina NCIMB 400 4277783 YP_750237.1 CDS Sfri_1548 NC_008345.1 1843547 1845394 D PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: son:SO2856 CBS domain protein; cyclic nucleotide-binding protein 1843547..1845394 Shewanella frigidimarina NCIMB 400 4277784 YP_750238.1 CDS Sfri_1549 NC_008345.1 1845394 1846083 D PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: son:SO2855 exonuclease; exonuclease, RNase T and DNA polymerase III 1845394..1846083 Shewanella frigidimarina NCIMB 400 4277785 YP_750239.1 CDS Sfri_1550 NC_008345.1 1846137 1847219 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase complement(1846137..1847219) Shewanella frigidimarina NCIMB 400 4277786 YP_750240.1 CDS Sfri_1551 NC_008345.1 1847339 1848013 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: son:SO2852 transcriptional regulator, GntR family; transcriptional regulator, GntR family protein complement(1847339..1848013) Shewanella frigidimarina NCIMB 400 4277787 YP_750241.1 CDS Sfri_1552 NC_008345.1 1848215 1848775 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 1848215..1848775 Shewanella frigidimarina NCIMB 400 4277788 YP_750242.1 CDS Sfri_1553 NC_008345.1 1855436 1855819 D KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA 1855436..1855819 Shewanella frigidimarina NCIMB 400 4277789 YP_750243.1 CDS Sfri_1554 NC_008345.1 1855982 1857541 D PFAM: Integrase, catalytic region; KEGG: pha:PSHAa0416 transposase; integrase catalytic subunit 1855982..1857541 Shewanella frigidimarina NCIMB 400 4277790 YP_750244.1 CDS Sfri_1555 NC_008345.1 1857570 1858328 D PFAM: IstB domain protein ATP-binding protein; KEGG: pha:PSHAa0414 transposase; IstB ATP binding domain-containing protein 1857570..1858328 Shewanella frigidimarina NCIMB 400 4277791 YP_750245.1 CDS Sfri_1556 NC_008345.1 1858379 1858555 D KEGG: son:SO4533 ISSod10, transposase OrfA; hypothetical protein 1858379..1858555 Shewanella frigidimarina NCIMB 400 4277792 YP_750246.1 CDS Sfri_1557 NC_008345.1 1858569 1859102 D KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB 1858569..1859102 Shewanella frigidimarina NCIMB 400 4277793 YP_750247.1 CDS Sfri_1558 NC_008345.1 1859202 1859681 D KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA 1859202..1859681 Shewanella frigidimarina NCIMB 400 4277794 YP_750248.1 CDS Sfri_1559 NC_008345.1 1859695 1860228 D KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB 1859695..1860228 Shewanella frigidimarina NCIMB 400 4277795 YP_750249.1 CDS Sfri_1560 NC_008345.1 1861166 1862191 D PFAM: secretion protein HlyD family protein; KEGG: hch:HCH_01961 membrane-fusion protein; secretion protein HlyD family protein 1861166..1862191 Shewanella frigidimarina NCIMB 400 4277796 YP_750250.1 CDS Sfri_1561 NC_008345.1 1862207 1864963 D PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: dar:Daro_0987 ABC-2:ABC transporter related; ABC transporter 1862207..1864963 Shewanella frigidimarina NCIMB 400 4277797 YP_750251.1 CDS Sfri_1562 NC_008345.1 1864967 1866091 D PFAM: ABC-2 type transporter; KEGG: sec:SC3514 putative ABC superfamily (atp_bind/membrane) transport protein; ABC-2 type transporter 1864967..1866091 Shewanella frigidimarina NCIMB 400 4277798 YP_750252.1 CDS Sfri_1563 NC_008345.1 1866181 1866411 R KEGG: son:SO4012 hypothetical protein; hypothetical protein complement(1866181..1866411) Shewanella frigidimarina NCIMB 400 4277799 YP_750253.1 CDS Sfri_1564 NC_008345.1 1866785 1867231 D PFAM: heat shock protein Hsp20; KEGG: son:SO2277 16 kDa heat shock protein A; heat shock protein Hsp20 1866785..1867231 Shewanella frigidimarina NCIMB 400 4277800 YP_750254.1 CDS Sfri_1565 NC_008345.1 1867375 1867815 R TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein, MerR; KEGG: vpa:VPA0335 SoxR protein; transcriptional regulator, MerR family protein complement(1867375..1867815) Shewanella frigidimarina NCIMB 400 4277801 YP_750255.1 CDS Sfri_1566 NC_008345.1 1867917 1868339 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO3586 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 1867917..1868339 Shewanella frigidimarina NCIMB 400 4277802 YP_750256.1 CDS Sfri_1567 NC_008345.1 1868438 1869145 R alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E complement(1868438..1869145) Shewanella frigidimarina NCIMB 400 4277803 YP_750257.1 CDS Sfri_1568 NC_008345.1 1869414 1870277 D putative metalloprotease; heat shock protein HtpX 1869414..1870277 Shewanella frigidimarina NCIMB 400 4277804 YP_750258.1 CDS Sfri_1569 NC_008345.1 1870900 1873419 D KEGG: son:SO3389 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1870900..1873419 Shewanella frigidimarina NCIMB 400 4277805 YP_750259.1 CDS Sfri_1570 NC_008345.1 1873486 1873848 R KEGG: rso:RSc3095 putative serine-rich protein; hypothetical protein complement(1873486..1873848) Shewanella frigidimarina NCIMB 400 4277962 YP_750260.1 CDS Sfri_1571 NC_008345.1 1873912 1874175 R hypothetical protein complement(1873912..1874175) Shewanella frigidimarina NCIMB 400 4277963 YP_750261.1 CDS Sfri_1572 NC_008345.1 1874303 1875808 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pca:Pcar_0361 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase 1874303..1875808 Shewanella frigidimarina NCIMB 400 4277964 YP_750262.1 CDS Sfri_1573 NC_008345.1 1875811 1876515 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cps:CPS_3305 DNA-binding response regulator BaeR; two component transcriptional regulator, winged helix family protein 1875811..1876515 Shewanella frigidimarina NCIMB 400 4277965 YP_750263.1 CDS Sfri_1574 NC_008345.1 1877264 1878136 D KEGG: son:SO2179 hypothetical protein; hypothetical protein 1877264..1878136 Shewanella frigidimarina NCIMB 400 4277966 YP_750264.1 CDS Sfri_1575 NC_008345.1 1878179 1879087 D PFAM: peptidase M23B; KEGG: son:SO2180 peptidase, M23/M37 family; peptidase M23B 1878179..1879087 Shewanella frigidimarina NCIMB 400 4277967 YP_750265.1 CDS Sfri_1576 NC_008345.1 1879316 1879720 D PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: vvu:VV21212 hypothetical protein; glutathione-dependent formaldehyde-activating protein 1879316..1879720 Shewanella frigidimarina NCIMB 400 4277968 YP_750266.1 CDS Sfri_1577 NC_008345.1 1879897 1881516 R PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ppr:PBPRA2314 putative FAD-dependent dehydrogenase; FAD dependent oxidoreductase complement(1879897..1881516) Shewanella frigidimarina NCIMB 400 4277969 YP_750267.1 CDS Sfri_1578 NC_008345.1 1881722 1882387 D KEGG: gsu:GSU1169 hypothetical protein; hypothetical protein 1881722..1882387 Shewanella frigidimarina NCIMB 400 4277970 YP_750268.1 CDS cls NC_008345.1 1882456 1883910 R catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase complement(1882456..1883910) Shewanella frigidimarina NCIMB 400 4277971 YP_750269.1 CDS Sfri_1580 NC_008345.1 1884310 1885119 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ppr:PBPRA2923 hypothetical protein; endonuclease/exonuclease/phosphatase 1884310..1885119 Shewanella frigidimarina NCIMB 400 4277972 YP_750270.1 CDS Sfri_1581 NC_008345.1 1885447 1885782 R KEGG: vfi:VF1779 tellurite resistance protein TehB; tellurite resistance protein TehB complement(1885447..1885782) Shewanella frigidimarina NCIMB 400 4277973 YP_750271.1 CDS Sfri_1582 NC_008345.1 1886043 1887188 R catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase complement(1886043..1887188) Shewanella frigidimarina NCIMB 400 4277974 YP_750272.1 CDS Sfri_1583 NC_008345.1 1887185 1888699 R detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin complement(1887185..1888699) Shewanella frigidimarina NCIMB 400 4277975 YP_750273.1 CDS Sfri_1584 NC_008345.1 1889046 1889879 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: hch:HCH_04858 transcriptional regulator; transcriptional regulator, LysR family protein complement(1889046..1889879) Shewanella frigidimarina NCIMB 400 4277976 YP_750274.1 CDS Sfri_1585 NC_008345.1 1889982 1891193 D PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: hch:HCH_04860 permease of the major facilitator superfamily; major facilitator transporter 1889982..1891193 Shewanella frigidimarina NCIMB 400 4277977 YP_750275.1 CDS Sfri_1586 NC_008345.1 1891887 1892195 D hypothetical protein 1891887..1892195 Shewanella frigidimarina NCIMB 400 4277978 YP_750276.1 CDS Sfri_1587 NC_008345.1 1892220 1892681 D PFAM: GCN5-related N-acetyltransferase; KEGG: vvu:VV20941 histone acetyltransferase HPA2; N-acetyltransferase GCN5 1892220..1892681 Shewanella frigidimarina NCIMB 400 4277979 YP_750277.1 CDS Sfri_1588 NC_008345.1 1892784 1893386 R PFAM: protein of unknown function DUF991; KEGG: son:SO2182 hypothetical protein; hypothetical protein complement(1892784..1893386) Shewanella frigidimarina NCIMB 400 4277980 YP_750278.1 CDS Sfri_1589 NC_008345.1 1893438 1893941 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: son:SO2183 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein complement(1893438..1893941) Shewanella frigidimarina NCIMB 400 4277981 YP_750279.1 CDS Sfri_1590 NC_008345.1 1894108 1894938 D PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: sde:Sde_2579 hypothetical protein; Ion transport protein 1894108..1894938 Shewanella frigidimarina NCIMB 400 4277982 YP_750280.1 CDS Sfri_1591 NC_008345.1 1894999 1896564 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO1918 MATE efflux family protein; MATE efflux family protein 1894999..1896564 Shewanella frigidimarina NCIMB 400 4277983 YP_750281.1 CDS Sfri_1592 NC_008345.1 1896768 1896965 R KEGG: son:SO1921 hypothetical protein; hypothetical protein complement(1896768..1896965) Shewanella frigidimarina NCIMB 400 4277984 YP_750282.1 CDS Sfri_1593 NC_008345.1 1897182 1897628 R KEGG: son:SO2799 lipoprotein, putative; putative lipoprotein complement(1897182..1897628) Shewanella frigidimarina NCIMB 400 4277985 YP_750283.1 CDS Sfri_1594 NC_008345.1 1897794 1898150 R PFAM: glutaredoxin; KEGG: son:SO2797 hypothetical protein; glutaredoxin complement(1897794..1898150) Shewanella frigidimarina NCIMB 400 4277986 YP_750284.1 CDS Sfri_1595 NC_008345.1 1898271 1901657 R PFAM: protein of unknown function DUF748; KEGG: son:SO2796 hypothetical protein; hypothetical protein complement(1898271..1901657) Shewanella frigidimarina NCIMB 400 4277987 YP_750285.1 CDS Sfri_1596 NC_008345.1 1901970 1902365 D KEGG: aci:ACIAD2379 putative acetyltransferase; putative acetyltransferase 1901970..1902365 Shewanella frigidimarina NCIMB 400 4277988 YP_750286.1 CDS Sfri_1597 NC_008345.1 1902512 1903213 D KEGG: son:SO2794 hypothetical protein; hypothetical protein 1902512..1903213 Shewanella frigidimarina NCIMB 400 4277989 YP_750287.1 CDS Sfri_1598 NC_008345.1 1903314 1903664 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2793 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 1903314..1903664 Shewanella frigidimarina NCIMB 400 4277990 YP_750288.1 CDS Sfri_1599 NC_008345.1 1903645 1903842 D PFAM: protein of unknown function DUF1289; KEGG: son:SO2792 hypothetical protein; hypothetical protein 1903645..1903842 Shewanella frigidimarina NCIMB 400 4277991 YP_750289.1 CDS Sfri_1600 NC_008345.1 1903888 1904403 R PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_2540 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(1903888..1904403) Shewanella frigidimarina NCIMB 400 4277992 YP_750290.1 CDS Sfri_1601 NC_008345.1 1904596 1905348 D PFAM: Integral membrane protein TerC; KEGG: hch:HCH_06655 membrane protein TerC, possibly involved in tellurium resistance; integral membrane protein TerC 1904596..1905348 Shewanella frigidimarina NCIMB 400 4277993 YP_750291.1 CDS asnB NC_008345.1 1905474 1907138 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B complement(1905474..1907138) Shewanella frigidimarina NCIMB 400 4277994 YP_750292.1 CDS Sfri_1603 NC_008345.1 1907675 1908076 D KEGG: cps:CPS_3135 hypothetical protein; hypothetical protein 1907675..1908076 Shewanella frigidimarina NCIMB 400 4277995 YP_750293.1 CDS Sfri_1604 NC_008345.1 1908250 1909908 R PFAM: peptidase M28; KEGG: son:SO2766 hypothetical protein; peptidase M28 complement(1908250..1909908) Shewanella frigidimarina NCIMB 400 4277996 YP_750294.1 CDS Sfri_1605 NC_008345.1 1910067 1910813 R TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO2762 nagD protein; UMP phosphatase complement(1910067..1910813) Shewanella frigidimarina NCIMB 400 4277264 YP_750295.1 CDS Sfri_1606 NC_008345.1 1911452 1913128 D PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO2581 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 1911452..1913128 Shewanella frigidimarina NCIMB 400 4277265 YP_750296.1 CDS Sfri_1607 NC_008345.1 1913559 1913933 R hypothetical protein complement(1913559..1913933) Shewanella frigidimarina NCIMB 400 4277266 YP_750297.1 CDS Sfri_1608 NC_008345.1 1914538 1915350 D KEGG: vvy:VV1912 hypothetical protein; hypothetical protein 1914538..1915350 Shewanella frigidimarina NCIMB 400 4277267 YP_750298.1 CDS Sfri_1609 NC_008345.1 1915896 1916708 R PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit complement(1915896..1916708) Shewanella frigidimarina NCIMB 400 4277268 YP_750299.1 CDS Sfri_1610 NC_008345.1 1916762 1917073 R PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein complement(1916762..1917073) Shewanella frigidimarina NCIMB 400 4277269 YP_750300.1 CDS Sfri_1611 NC_008345.1 1917217 1918227 R KEGG: son:SO3714 sugar-binding protein, putative; sugar-binding protein, putative complement(1917217..1918227) Shewanella frigidimarina NCIMB 400 4277270 YP_750301.1 CDS Sfri_1612 NC_008345.1 1918697 1919824 R PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: pha:PSHAb0018 putative Zn-dependent enzyme; alcohol dehydrogenase complement(1918697..1919824) Shewanella frigidimarina NCIMB 400 4277271 YP_750302.1 CDS Sfri_1613 NC_008345.1 1919959 1920636 R PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: pha:PSHAb0017 putative glutathione S-transferase family protein; glutathione S-transferase domain-containing protein complement(1919959..1920636) Shewanella frigidimarina NCIMB 400 4277272 YP_750303.1 CDS Sfri_1614 NC_008345.1 1920904 1921788 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pha:PSHAb0014 putative transcriptional regulatory protein (LysR family); transcriptional regulator, LysR family protein 1920904..1921788 Shewanella frigidimarina NCIMB 400 4277273 YP_750304.1 CDS Sfri_1615 NC_008345.1 1922201 1923313 D catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 1922201..1923313 Shewanella frigidimarina NCIMB 400 4277274 YP_750305.1 CDS Sfri_1616 NC_008345.1 1923393 1925102 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 1923393..1925102 Shewanella frigidimarina NCIMB 400 4277275 YP_750306.1 CDS Sfri_1617 NC_008345.1 1926194 1926652 D hypothetical protein 1926194..1926652 Shewanella frigidimarina NCIMB 400 4277276 YP_750307.1 CDS Sfri_1618 NC_008345.1 1927036 1927896 D KEGG: son:SO1154 hypothetical protein; hypothetical protein 1927036..1927896 Shewanella frigidimarina NCIMB 400 4277277 YP_750308.1 CDS Sfri_1619 NC_008345.1 1927935 1928207 R hypothetical protein complement(1927935..1928207) Shewanella frigidimarina NCIMB 400 4277278 YP_750309.1 CDS Sfri_1620 NC_008345.1 1928518 1928943 R hypothetical protein complement(1928518..1928943) Shewanella frigidimarina NCIMB 400 4277279 YP_750310.1 CDS Sfri_1621 NC_008345.1 1929025 1930215 R catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase complement(1929025..1930215) Shewanella frigidimarina NCIMB 400 4277280 YP_750311.1 CDS Sfri_1622 NC_008345.1 1930379 1932550 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2192 sensor histidine kinase; sensor signal transduction histidine kinase complement(1930379..1932550) Shewanella frigidimarina NCIMB 400 4277281 YP_750312.1 CDS Sfri_1623 NC_008345.1 1932554 1933243 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2193 DNA-binding response regulator; two component transcriptional regulator, winged helix family protein complement(1932554..1933243) Shewanella frigidimarina NCIMB 400 4277282 YP_750313.1 CDS Sfri_1624 NC_008345.1 1933504 1934271 D PFAM: OmpA/MotB domain protein; KEGG: son:SO2194 OmpA family protein; OmpA/MotB domain-containing protein 1933504..1934271 Shewanella frigidimarina NCIMB 400 4277283 YP_750314.1 CDS Sfri_1625 NC_008345.1 1934361 1936529 D PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: son:SO2195 inter-alpha-trypsin inhibitor domain protein; vault protein inter-alpha-trypsin subunit 1934361..1936529 Shewanella frigidimarina NCIMB 400 4277284 YP_750315.1 CDS Sfri_1626 NC_008345.1 1936544 1937170 D TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: son:SO2196 LPXTG-site transpeptidase family protein; sortase family protein 1936544..1937170 Shewanella frigidimarina NCIMB 400 4277285 YP_750316.1 CDS ilvH NC_008345.1 1937434 1937928 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(1937434..1937928) Shewanella frigidimarina NCIMB 400 4277286 YP_750317.1 CDS Sfri_1628 NC_008345.1 1937928 1939646 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: son:SO2279 acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit complement(1937928..1939646) Shewanella frigidimarina NCIMB 400 4277287 YP_750318.1 CDS Sfri_1629 NC_008345.1 1940043 1941263 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2280 bicyclomycin resistance protein; Bcr/CflA subfamily drug resistance transporter complement(1940043..1941263) Shewanella frigidimarina NCIMB 400 4277288 YP_750319.1 CDS Sfri_1630 NC_008345.1 1941625 1943427 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: pha:PSHAa2458 sulfate permease protein; sulfate transporter 1941625..1943427 Shewanella frigidimarina NCIMB 400 4277289 YP_750320.1 CDS Sfri_1631 NC_008345.1 1943680 1944279 D PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO3563 SM-20 domain protein; 2OG-Fe(II) oxygenase 1943680..1944279 Shewanella frigidimarina NCIMB 400 4277290 YP_750321.1 CDS Sfri_1632 NC_008345.1 1944464 1945054 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2850 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1944464..1945054 Shewanella frigidimarina NCIMB 400 4277291 YP_750322.1 CDS Sfri_1633 NC_008345.1 1945073 1945477 D KEGG: son:SO2848 hypothetical protein; hypothetical protein 1945073..1945477 Shewanella frigidimarina NCIMB 400 4277292 YP_750323.1 CDS Sfri_1634 NC_008345.1 1945523 1945855 R PFAM: Uncharacterised conserved protein UCP025560; KEGG: cps:CPS_4712 hypothetical protein; hypothetical protein complement(1945523..1945855) Shewanella frigidimarina NCIMB 400 4277293 YP_750324.1 CDS Sfri_1635 NC_008345.1 1945871 1946071 R KEGG: son:SO2063 hypothetical protein; hypothetical protein complement(1945871..1946071) Shewanella frigidimarina NCIMB 400 4277294 YP_750325.1 CDS Sfri_1636 NC_008345.1 1946093 1949269 R KEGG: son:SO2064 hypothetical protein; hypothetical protein complement(1946093..1949269) Shewanella frigidimarina NCIMB 400 4277295 YP_750326.1 CDS Sfri_1637 NC_008345.1 1949720 1950616 R Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase complement(1949720..1950616) Shewanella frigidimarina NCIMB 400 4277296 YP_750327.1 CDS sbcB NC_008345.1 1950662 1952083 R Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I complement(1950662..1952083) Shewanella frigidimarina NCIMB 400 4277297 YP_750328.1 CDS Sfri_1639 NC_008345.1 1952270 1953481 D PFAM: phage integrase family protein; KEGG: cps:CPS_2015 site-specific recombinase, phage integrase family; phage integrase family protein 1952270..1953481 Shewanella frigidimarina NCIMB 400 4277298 YP_750329.1 CDS Sfri_1640 NC_008345.1 1953699 1953824 R KEGG: son:SO3007 hypothetical protein; hypothetical protein complement(1953699..1953824) Shewanella frigidimarina NCIMB 400 4277299 YP_750330.1 CDS Sfri_1641 NC_008345.1 1953821 1954063 R hypothetical protein complement(1953821..1954063) Shewanella frigidimarina NCIMB 400 4277300 YP_750331.1 CDS Sfri_1642 NC_008345.1 1954060 1954362 R hypothetical protein complement(1954060..1954362) Shewanella frigidimarina NCIMB 400 4277301 YP_750332.1 CDS Sfri_1643 NC_008345.1 1954363 1954659 R KEGG: son:SO2664 hypothetical protein; hypothetical protein complement(1954363..1954659) Shewanella frigidimarina NCIMB 400 4277302 YP_750333.1 CDS Sfri_1644 NC_008345.1 1954638 1954973 R hypothetical protein complement(1954638..1954973) Shewanella frigidimarina NCIMB 400 4277303 YP_750334.1 CDS Sfri_1645 NC_008345.1 1955140 1955463 R hypothetical protein complement(1955140..1955463) Shewanella frigidimarina NCIMB 400 4277304 YP_750335.1 CDS Sfri_1646 NC_008345.1 1955674 1956555 D KEGG: sao:SAOUHSC_00163 hypothetical protein; hypothetical protein 1955674..1956555 Shewanella frigidimarina NCIMB 400 4277305 YP_750336.1 CDS Sfri_1647 NC_008345.1 1956521 1957417 D KEGG: sao:SAOUHSC_00164 hypothetical protein; hypothetical protein 1956521..1957417 Shewanella frigidimarina NCIMB 400 4277306 YP_750337.1 CDS Sfri_1648 NC_008345.1 1957596 1958288 R PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; KEGG: pae:PA0906 probable transcriptional regulator; putative phage repressor complement(1957596..1958288) Shewanella frigidimarina NCIMB 400 4277307 YP_750338.1 CDS Sfri_1649 NC_008345.1 1958407 1958592 D conserved in bacteria, prophage-related; KEGG: hch:HCH_00596 uncharacterized protein conserved in bacteria, prophage-related; hypothetical protein 1958407..1958592 Shewanella frigidimarina NCIMB 400 4277308 YP_750339.1 CDS Sfri_1650 NC_008345.1 1958620 1959213 D hypothetical protein 1958620..1959213 Shewanella frigidimarina NCIMB 400 4277309 YP_750340.1 CDS Sfri_1651 NC_008345.1 1959215 1959418 D KEGG: son:SO2987 hypothetical protein; hypothetical protein 1959215..1959418 Shewanella frigidimarina NCIMB 400 4277310 YP_750341.1 CDS Sfri_1652 NC_008345.1 1959420 1959638 D KEGG: sdn:Sden_3264 hypothetical protein; hypothetical protein 1959420..1959638 Shewanella frigidimarina NCIMB 400 4277311 YP_750342.1 CDS Sfri_1653 NC_008345.1 1959953 1960708 D KEGG: hit:NTHI1724 hypothetical protein; hypothetical protein 1959953..1960708 Shewanella frigidimarina NCIMB 400 4277312 YP_750343.1 CDS Sfri_1654 NC_008345.1 1960705 1961370 D PFAM: replication P family protein; KEGG: hch:HCH_00598 hypothetical protein; replication P family protein 1960705..1961370 Shewanella frigidimarina NCIMB 400 4277313 YP_750344.1 CDS Sfri_1655 NC_008345.1 1961584 1962846 D PFAM: phage integrase family protein; KEGG: vvy:VVA0857 phage integrase; phage integrase family protein 1961584..1962846 Shewanella frigidimarina NCIMB 400 4277314 YP_750345.1 CDS Sfri_1656 NC_008345.1 1962901 1963119 D PFAM: helix-turn-helix domain protein; KEGG: sdn:Sden_3260 transciptional regulator; transcriptional regulator, XRE family protein 1962901..1963119 Shewanella frigidimarina NCIMB 400 4277315 YP_750346.1 CDS Sfri_1657 NC_008345.1 1963119 1963487 D hypothetical protein 1963119..1963487 Shewanella frigidimarina NCIMB 400 4277316 YP_750347.1 CDS Sfri_1658 NC_008345.1 1964529 1965821 D PFAM: putative esterase; KEGG: cps:CPS_4960 putative esterase; putative esterase 1964529..1965821 Shewanella frigidimarina NCIMB 400 4277317 YP_750348.1 CDS Sfri_1659 NC_008345.1 1966349 1966621 D hypothetical protein 1966349..1966621 Shewanella frigidimarina NCIMB 400 4277318 YP_750349.1 CDS Sfri_1660 NC_008345.1 1966741 1967166 D hypothetical protein 1966741..1967166 Shewanella frigidimarina NCIMB 400 4277319 YP_750350.1 CDS Sfri_1661 NC_008345.1 1967176 1967532 D hypothetical protein 1967176..1967532 Shewanella frigidimarina NCIMB 400 4277320 YP_750351.1 CDS Sfri_1662 NC_008345.1 1968027 1969070 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: sde:Sde_3077 response regulator receiver domain protein (CheY-like); transposase IS116/IS110/IS902 family protein complement(1968027..1969070) Shewanella frigidimarina NCIMB 400 4277321 YP_750352.1 CDS Sfri_1663 NC_008345.1 1969546 1969959 D PFAM: protein of unknown function DUF1311; KEGG: rbe:RBE_0642 hypothetical protein; hypothetical protein 1969546..1969959 Shewanella frigidimarina NCIMB 400 4277322 YP_750353.1 CDS Sfri_1664 NC_008345.1 1970410 1970616 D hypothetical protein 1970410..1970616 Shewanella frigidimarina NCIMB 400 4277323 YP_750354.1 CDS Sfri_1665 NC_008345.1 1970666 1971217 D TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: ppr:PBPRB0776 putative adenylate cyclase CyaB; putative adenylyl cyclase CyaB 1970666..1971217 Shewanella frigidimarina NCIMB 400 4277324 YP_750355.1 CDS Sfri_1666 NC_008345.1 1971351 1971935 R KEGG: ssn:SSO_1885 hypothetical bacteriophage protein; phage-encoded protein-like protein complement(1971351..1971935) Shewanella frigidimarina NCIMB 400 4277325 YP_750356.1 CDS Sfri_1667 NC_008345.1 1972551 1972991 D hypothetical protein 1972551..1972991 Shewanella frigidimarina NCIMB 400 4277326 YP_750357.1 CDS Sfri_1668 NC_008345.1 1973418 1974029 D hypothetical protein 1973418..1974029 Shewanella frigidimarina NCIMB 400 4277327 YP_750358.1 CDS Sfri_1669 NC_008345.1 1974457 1975539 D hypothetical protein 1974457..1975539 Shewanella frigidimarina NCIMB 400 4277328 YP_750359.1 CDS Sfri_1670 NC_008345.1 1975757 1976560 D hypothetical protein 1975757..1976560 Shewanella frigidimarina NCIMB 400 4277329 YP_750360.1 CDS Sfri_1671 NC_008345.1 1976940 1977407 D PFAM: glycoside hydrolase, family 24; KEGG: son:SO0659 lysozyme, putative; glycoside hydrolase family protein 1976940..1977407 Shewanella frigidimarina NCIMB 400 4277330 YP_750361.1 CDS Sfri_1672 NC_008345.1 1977407 1977844 D hypothetical protein 1977407..1977844 Shewanella frigidimarina NCIMB 400 4277331 YP_750362.1 CDS Sfri_1673 NC_008345.1 1977943 1978287 D hypothetical protein 1977943..1978287 Shewanella frigidimarina NCIMB 400 4277332 YP_750363.1 CDS Sfri_1674 NC_008345.1 1978291 1978824 D PFAM: phage DNA packaging Nu1; KEGG: ssn:SSO_2431 bacteriophage DNA packaging protein; phage DNA packaging Nu1 1978291..1978824 Shewanella frigidimarina NCIMB 400 4277333 YP_750364.1 CDS Sfri_1675 NC_008345.1 1978799 1980781 D PFAM: phage terminase GpA; KEGG: ecs:ECs1630 terminase large subunit; phage terminase GpA 1978799..1980781 Shewanella frigidimarina NCIMB 400 4277701 YP_750365.1 CDS Sfri_1676 NC_008345.1 1980781 1980984 D KEGG: ecs:ECs2962 hypothetical protein; hypothetical protein 1980781..1980984 Shewanella frigidimarina NCIMB 400 4277702 YP_750366.1 CDS Sfri_1677 NC_008345.1 1980993 1982552 D TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: stm:STM0911 hypothetical protein; phage portal protein, lambda family protein 1980993..1982552 Shewanella frigidimarina NCIMB 400 4277703 YP_750367.1 CDS Sfri_1678 NC_008345.1 1982575 1984545 D PFAM: peptidase S14, ClpP; KEGG: stm:STM0912 ATP-dependent protease; peptidase S14, ClpP 1982575..1984545 Shewanella frigidimarina NCIMB 400 4277704 YP_750368.1 CDS Sfri_1679 NC_008345.1 1984649 1984969 D KEGG: stm:STM1034 putative RecA/RadA recombinase; putative RecA/RadA recombinase 1984649..1984969 Shewanella frigidimarina NCIMB 400 4277705 YP_750369.1 CDS Sfri_1680 NC_008345.1 1984962 1985267 D hypothetical protein 1984962..1985267 Shewanella frigidimarina NCIMB 400 4277706 YP_750370.1 CDS Sfri_1681 NC_008345.1 1985278 1985829 D hypothetical protein 1985278..1985829 Shewanella frigidimarina NCIMB 400 4277707 YP_750371.1 CDS Sfri_1682 NC_008345.1 1985855 1986280 D hypothetical protein 1985855..1986280 Shewanella frigidimarina NCIMB 400 4277708 YP_750372.1 CDS Sfri_1683 NC_008345.1 1986277 1986996 D KEGG: hch:HCH_02903 hypothetical protein; hypothetical protein 1986277..1986996 Shewanella frigidimarina NCIMB 400 4277709 YP_750373.1 CDS Sfri_1684 NC_008345.1 1987074 1990952 D TIGRFAM: phage tape measure protein; KEGG: son:SO0680 hypothetical protein; phage tape measure protein 1987074..1990952 Shewanella frigidimarina NCIMB 400 4277710 YP_750374.1 CDS Sfri_1685 NC_008345.1 1990989 1991366 D hypothetical protein 1990989..1991366 Shewanella frigidimarina NCIMB 400 4277711 YP_750375.1 CDS Sfri_1686 NC_008345.1 1991401 1993839 D KEGG: son:SO0682 hypothetical protein; hypothetical protein 1991401..1993839 Shewanella frigidimarina NCIMB 400 4277712 YP_750376.1 CDS Sfri_1687 NC_008345.1 1993856 1994815 D KEGG: son:SO0683 hypothetical protein; hypothetical protein 1993856..1994815 Shewanella frigidimarina NCIMB 400 4277713 YP_750377.1 CDS Sfri_1688 NC_008345.1 1994808 1995095 D hypothetical protein 1994808..1995095 Shewanella frigidimarina NCIMB 400 4277714 YP_750378.1 CDS Sfri_1689 NC_008345.1 1995092 1996864 D KEGG: son:SO0688 hypothetical protein; hypothetical protein 1995092..1996864 Shewanella frigidimarina NCIMB 400 4277715 YP_750379.1 CDS Sfri_1690 NC_008345.1 1996898 1997110 D KEGG: sdn:Sden_3237 hypothetical protein; hypothetical protein 1996898..1997110 Shewanella frigidimarina NCIMB 400 4277716 YP_750380.1 CDS Sfri_1691 NC_008345.1 1997621 1998427 D KEGG: son:SO2789 hypothetical protein; hypothetical protein 1997621..1998427 Shewanella frigidimarina NCIMB 400 4277717 YP_750381.1 CDS rrmA NC_008345.1 1998454 1999275 D methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 1998454..1999275 Shewanella frigidimarina NCIMB 400 4277718 YP_750382.1 CDS Sfri_1693 NC_008345.1 1999531 1999737 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: son:SO2787 cold shock domain family protein; cold-shock DNA-binding domain-containing protein 1999531..1999737 Shewanella frigidimarina NCIMB 400 4277719 YP_750383.1 CDS Sfri_1694 NC_008345.1 2000369 2001268 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1865 ABC transporter, ATP-binding protein; ABC transporter complement(2000369..2001268) Shewanella frigidimarina NCIMB 400 4277720 YP_750384.1 CDS Sfri_1695 NC_008345.1 2001265 2002098 R PFAM: ABC-2 type transporter; KEGG: son:SO1866 hypothetical protein; ABC-2 type transporter complement(2001265..2002098) Shewanella frigidimarina NCIMB 400 4277721 YP_750385.1 CDS Sfri_1696 NC_008345.1 2002136 2002789 R PFAM: protein of unknown function DUF480; KEGG: son:SO1867 hypothetical protein; hypothetical protein complement(2002136..2002789) Shewanella frigidimarina NCIMB 400 4277722 YP_750386.1 CDS Sfri_1697 NC_008345.1 2002895 2003728 R KEGG: son:SO1868 hypothetical protein; hypothetical protein complement(2002895..2003728) Shewanella frigidimarina NCIMB 400 4277723 YP_750387.1 CDS Sfri_1698 NC_008345.1 2004315 2006225 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 2004315..2006225 Shewanella frigidimarina NCIMB 400 4277724 YP_750388.1 CDS Sfri_1699 NC_008345.1 2006470 2007399 D PFAM: S-adenosylmethionine decarboxylase; KEGG: son:SO1871 S-adenosylmethionine decarboxylase proenzyme, putative; adenosylmethionine decarboxylase 2006470..2007399 Shewanella frigidimarina NCIMB 400 4277725 YP_750389.1 CDS Sfri_1701 NC_008345.1 2007757 2007879 D hypothetical protein 2007757..2007879 Shewanella frigidimarina NCIMB 400 4277726 YP_750390.1 CDS Sfri_1702 NC_008345.1 2007982 2008620 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 2007982..2008620 Shewanella frigidimarina NCIMB 400 4277727 YP_750391.1 CDS Sfri_1703 NC_008345.1 2008620 2009117 D PFAM: protein of unknown function DUF188; KEGG: son:SO2894 YaiI/YqxD family protein; hypothetical protein 2008620..2009117 Shewanella frigidimarina NCIMB 400 4277728 YP_750392.1 CDS Sfri_1704 NC_008345.1 2009165 2009743 D PFAM: YceI family protein; KEGG: son:SO2893 hypothetical protein; YceI family protein 2009165..2009743 Shewanella frigidimarina NCIMB 400 4277729 YP_750393.1 CDS Sfri_1705 NC_008345.1 2009826 2010176 D KEGG: son:SO2891 hypothetical protein; hypothetical protein 2009826..2010176 Shewanella frigidimarina NCIMB 400 4277730 YP_750394.1 CDS Sfri_1706 NC_008345.1 2010231 2011115 D PFAM: protein of unknown function DUF785; KEGG: vfi:VFA0277 hypothetical protein; hypothetical protein 2010231..2011115 Shewanella frigidimarina NCIMB 400 4277731 YP_750395.1 CDS Sfri_1707 NC_008345.1 2011639 2014506 D PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: son:SO1844 extracellular nuclease, putative; endonuclease/exonuclease/phosphatase 2011639..2014506 Shewanella frigidimarina NCIMB 400 4277732 YP_750396.1 CDS pheS NC_008345.1 2014985 2015968 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2014985..2015968 Shewanella frigidimarina NCIMB 400 4277733 YP_750397.1 CDS pheT NC_008345.1 2015984 2018371 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2015984..2018371 Shewanella frigidimarina NCIMB 400 4277734 YP_750398.1 CDS ihfA NC_008345.1 2018375 2018674 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2018375..2018674 Shewanella frigidimarina NCIMB 400 4277735 YP_750399.1 CDS Sfri_1711 NC_008345.1 2018945 2019925 D Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2018945..2019925 Shewanella frigidimarina NCIMB 400 4277490 YP_750400.1 CDS Sfri_1712 NC_008345.1 2019974 2020849 D PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa2182 mechanosensitive ion channel; MscS mechanosensitive ion channel 2019974..2020849 Shewanella frigidimarina NCIMB 400 4277491 YP_750401.1 CDS Sfri_1713 NC_008345.1 2020912 2021532 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase complement(2020912..2021532) Shewanella frigidimarina NCIMB 400 4277492 YP_750402.1 CDS Sfri_1714 NC_008345.1 2021591 2022364 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(2021591..2022364) Shewanella frigidimarina NCIMB 400 4277493 YP_750403.1 CDS Sfri_1715 NC_008345.1 2022346 2023083 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(2022346..2023083) Shewanella frigidimarina NCIMB 400 4277494 YP_750404.1 CDS hisH NC_008345.1 2023080 2023742 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(2023080..2023742) Shewanella frigidimarina NCIMB 400 4277495 YP_750405.1 CDS Sfri_1717 NC_008345.1 2023752 2024819 R catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase complement(2023752..2024819) Shewanella frigidimarina NCIMB 400 4277496 YP_750406.1 CDS Sfri_1718 NC_008345.1 2024893 2025942 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(2024893..2025942) Shewanella frigidimarina NCIMB 400 4277497 YP_750407.1 CDS hisD NC_008345.1 2026019 2027308 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(2026019..2027308) Shewanella frigidimarina NCIMB 400 4277498 YP_750408.1 CDS hisG NC_008345.1 2027314 2028213 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(2027314..2028213) Shewanella frigidimarina NCIMB 400 4277499 YP_750409.1 CDS Sfri_1721 NC_008345.1 2029046 2029930 D KEGG: pha:PSHAb0167 putative GGDEF sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 2029046..2029930 Shewanella frigidimarina NCIMB 400 4277500 YP_750410.1 CDS Sfri_1722 NC_008345.1 2030121 2030495 D KEGG: sde:Sde_0294 putative transcriptional regulator, fis family; putative transcriptional regulator, fis family protein 2030121..2030495 Shewanella frigidimarina NCIMB 400 4277501 YP_750411.1 CDS Sfri_1723 NC_008345.1 2030550 2031101 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: cps:CPS_3489 hypothetical protein; twin-arginine translocation pathway signal complement(2030550..2031101) Shewanella frigidimarina NCIMB 400 4277502 YP_750412.1 CDS Sfri_1724 NC_008345.1 2031264 2032607 R hypothetical protein complement(2031264..2032607) Shewanella frigidimarina NCIMB 400 4277503 YP_750413.1 CDS Sfri_1725 NC_008345.1 2032957 2033970 D PFAM: permease; KEGG: cps:CPS_3357 putative permease; permease 2032957..2033970 Shewanella frigidimarina NCIMB 400 4277504 YP_750414.1 CDS Sfri_1726 NC_008345.1 2033987 2034217 D KEGG: rpa:RPA3557 thiol-disulfide isomerase and thioredoxins; thiol-disulfide isomerase and thioredoxins 2033987..2034217 Shewanella frigidimarina NCIMB 400 4277505 YP_750415.1 CDS Sfri_1727 NC_008345.1 2034612 2036537 D SMART: helicase c2; KEGG: son:SO2081 ATP-dependent helicase, DinG family; helicase c2 2034612..2036537 Shewanella frigidimarina NCIMB 400 4277506 YP_750416.1 CDS Sfri_1728 NC_008345.1 2036611 2037312 D PFAM: peptidase M22, glycoprotease; KEGG: son:SO2586 hypothetical protein; peptidase M22, glycoprotease 2036611..2037312 Shewanella frigidimarina NCIMB 400 4277507 YP_750417.1 CDS Sfri_1729 NC_008345.1 2037372 2037701 D KEGG: son:SO2585 hypothetical protein; hypothetical protein 2037372..2037701 Shewanella frigidimarina NCIMB 400 4277508 YP_750418.1 CDS Sfri_1730 NC_008345.1 2037694 2038371 D KEGG: son:SO2584 hypothetical protein; hypothetical protein 2037694..2038371 Shewanella frigidimarina NCIMB 400 4277509 YP_750419.1 CDS Sfri_1731 NC_008345.1 2038368 2039231 D KEGG: son:SO2583 hypothetical protein; hypothetical protein 2038368..2039231 Shewanella frigidimarina NCIMB 400 4277510 YP_750420.1 CDS Sfri_1732 NC_008345.1 2039253 2040146 D PFAM: alpha/beta hydrolase fold; KEGG: son:SO2582 hydrolase, alpha/beta fold family; alpha/beta hydrolase 2039253..2040146 Shewanella frigidimarina NCIMB 400 4277511 YP_750421.1 CDS Sfri_1733 NC_008345.1 2040345 2042018 D Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2040345..2042018 Shewanella frigidimarina NCIMB 400 4277512 YP_750422.1 CDS Sfri_1734 NC_008345.1 2042108 2043220 D TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: son:SO2580 ribonuclease D; ribonuclease D 2042108..2043220 Shewanella frigidimarina NCIMB 400 4277513 YP_750423.1 CDS minE NC_008345.1 2043323 2043583 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(2043323..2043583) Shewanella frigidimarina NCIMB 400 4277514 YP_750424.1 CDS Sfri_1736 NC_008345.1 2043586 2044395 R TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO2577 septum site-determining protein MinD; septum site-determining protein MinD complement(2043586..2044395) Shewanella frigidimarina NCIMB 400 4277515 YP_750425.1 CDS minC NC_008345.1 2044423 2045088 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(2044423..2045088) Shewanella frigidimarina NCIMB 400 4277516 YP_750426.1 CDS Sfri_1738 NC_008345.1 2045207 2045485 D PFAM: protein of unknown function DUF709; KEGG: son:SO2575 hypothetical protein; hypothetical protein 2045207..2045485 Shewanella frigidimarina NCIMB 400 4277517 YP_750427.1 CDS Sfri_1739 NC_008345.1 2045517 2046485 D KEGG: ilo:IL1824 membrane-bound lytic murein transglycosylase; membrane-bound lytic murein transglycosylase 2045517..2046485 Shewanella frigidimarina NCIMB 400 4277518 YP_750428.1 CDS Sfri_1740 NC_008345.1 2046548 2046994 D PFAM: protein of unknown function UPF0153; KEGG: son:SO2573 hypothetical protein; hypothetical protein 2046548..2046994 Shewanella frigidimarina NCIMB 400 4277519 YP_750429.1 CDS Sfri_1741 NC_008345.1 2047065 2047574 R PFAM: Disulphide bond formation protein DsbB; KEGG: son:SO2887 disulfide bond formation protein b; disulfide bond formation protein DsbB complement(2047065..2047574) Shewanella frigidimarina NCIMB 400 4277520 YP_750430.1 CDS nhaB NC_008345.1 2047688 2049274 R involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter complement(2047688..2049274) Shewanella frigidimarina NCIMB 400 4277521 YP_750431.1 CDS Sfri_1743 NC_008345.1 2049865 2050584 D Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 2049865..2050584 Shewanella frigidimarina NCIMB 400 4277522 YP_750432.1 CDS Sfri_1744 NC_008345.1 2050676 2052217 R PFAM: SpoVR family protein; KEGG: son:SO2884 hypothetical protein; SpoVR family protein complement(2050676..2052217) Shewanella frigidimarina NCIMB 400 4277523 YP_750433.1 CDS Sfri_1745 NC_008345.1 2052227 2053492 R PFAM: protein of unknown function DUF444; KEGG: son:SO2883 hypothetical protein; hypothetical protein complement(2052227..2053492) Shewanella frigidimarina NCIMB 400 4277524 YP_750434.1 CDS Sfri_1746 NC_008345.1 2053556 2055490 R PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: son:SO2882 hypothetical Ser protein kinas; putative serine protein kinase PrkA complement(2053556..2055490) Shewanella frigidimarina NCIMB 400 4277525 YP_750435.1 CDS Sfri_1747 NC_008345.1 2055788 2056372 R PFAM: manganese and iron superoxide dismutase; KEGG: son:SO2881 superoxide dismutase, Fe; superoxide dismutase complement(2055788..2056372) Shewanella frigidimarina NCIMB 400 4277526 YP_750436.1 CDS Sfri_1748 NC_008345.1 2056608 2056949 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: son:SO2880 glutaredoxin domain protein; glutaredoxin-like protein 2056608..2056949 Shewanella frigidimarina NCIMB 400 4277527 YP_750437.1 CDS Sfri_1749 NC_008345.1 2057076 2058305 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: son:SO2879 uracil permease; uracil-xanthine permease complement(2057076..2058305) Shewanella frigidimarina NCIMB 400 4277528 YP_750438.1 CDS Sfri_1750 NC_008345.1 2058544 2059641 D KEGG: son:SO2878 hypothetical protein; hypothetical protein 2058544..2059641 Shewanella frigidimarina NCIMB 400 4277529 YP_750439.1 CDS Sfri_1751 NC_008345.1 2059795 2060505 D controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 2059795..2060505 Shewanella frigidimarina NCIMB 400 4277530 YP_750440.1 CDS Sfri_1752 NC_008345.1 2060620 2062560 R KEGG: son:SO2876 hypothetical protein; hypothetical protein complement(2060620..2062560) Shewanella frigidimarina NCIMB 400 4277531 YP_750441.1 CDS Sfri_1753 NC_008345.1 2062710 2063087 R KEGG: son:SO2872 hypothetical protein; hypothetical protein complement(2062710..2063087) Shewanella frigidimarina NCIMB 400 4277532 YP_750442.1 CDS Sfri_1754 NC_008345.1 2063099 2063461 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: son:SO2871 arsenate reductase, putative; arsenate reductase complement(2063099..2063461) Shewanella frigidimarina NCIMB 400 4277533 YP_750443.1 CDS Sfri_1755 NC_008345.1 2063553 2065022 R PFAM: peptidase M48, Ste24p; KEGG: son:SO2869 hypothetical protein; peptidase M48, Ste24p complement(2063553..2065022) Shewanella frigidimarina NCIMB 400 4277534 YP_750444.1 CDS Sfri_1756 NC_008345.1 2065150 2065371 D PFAM: SirA family protein; KEGG: son:SO2868 hypothetical protein; SirA family protein 2065150..2065371 Shewanella frigidimarina NCIMB 400 4277535 YP_750445.1 CDS Sfri_1757 NC_008345.1 2065397 2066479 D PFAM: protein of unknown function UPF0118; KEGG: son:SO2867 permease PerM, putative; hypothetical protein 2065397..2066479 Shewanella frigidimarina NCIMB 400 4277536 YP_750446.1 CDS Sfri_1758 NC_008345.1 2066751 2066984 R KEGG: son:SO2479 hypothetical protein; hypothetical protein complement(2066751..2066984) Shewanella frigidimarina NCIMB 400 4277537 YP_750447.1 CDS Sfri_1759 NC_008345.1 2067061 2067798 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(2067061..2067798) Shewanella frigidimarina NCIMB 400 4277538 YP_750448.1 CDS Sfri_1760 NC_008345.1 2067887 2068957 R PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO2477 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase complement(2067887..2068957) Shewanella frigidimarina NCIMB 400 4277539 YP_750449.1 CDS Sfri_1761 NC_008345.1 2069029 2070213 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO2476 polysaccharide biosynthesis protein; DegT/DnrJ/EryC1/StrS aminotransferase complement(2069029..2070213) Shewanella frigidimarina NCIMB 400 4277540 YP_750450.1 CDS Sfri_1762 NC_008345.1 2070383 2070997 R PFAM: carbonic anhydrase; KEGG: son:SO2474 carbonic anhydrase family protein; carbonate dehydratase complement(2070383..2070997) Shewanella frigidimarina NCIMB 400 4277541 YP_750451.1 CDS Sfri_1763 NC_008345.1 2071107 2071955 R PFAM: alpha/beta hydrolase fold; KEGG: son:SO2473 hydrolase, alpha/beta fold family; alpha/beta hydrolase complement(2071107..2071955) Shewanella frigidimarina NCIMB 400 4277542 YP_750452.1 CDS Sfri_1764 NC_008345.1 2071991 2072701 R PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: son:SO2472 D-alanyl-D-alanine carboxypeptidase-related protein; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins complement(2071991..2072701) Shewanella frigidimarina NCIMB 400 4277543 YP_750453.1 CDS Sfri_1765 NC_008345.1 2072692 2073825 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(2072692..2073825) Shewanella frigidimarina NCIMB 400 4277544 YP_750454.1 CDS Sfri_1766 NC_008345.1 2073825 2074166 R TIGRFAM: conserved hypothetical protein; PFAM: arsenate reductase and related; KEGG: son:SO2470 hypothetical protein; hypothetical protein complement(2073825..2074166) Shewanella frigidimarina NCIMB 400 4277545 YP_750455.1 CDS Sfri_1767 NC_008345.1 2074442 2074951 R functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter complement(2074442..2074951) Shewanella frigidimarina NCIMB 400 4277546 YP_750456.1 CDS Sfri_1768 NC_008345.1 2075030 2076754 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: son:SO2237 phosphotransferase system, enzyme I; phosphoenolpyruvate-protein phosphotransferase complement(2075030..2076754) Shewanella frigidimarina NCIMB 400 4277547 YP_750457.1 CDS Sfri_1769 NC_008345.1 2076767 2077033 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: son:SO2238 phosphocarrier protein HPr; phosphocarrier, HPr family protein complement(2076767..2077033) Shewanella frigidimarina NCIMB 400 4277548 YP_750458.1 CDS Sfri_1770 NC_008345.1 2077358 2078974 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO2240 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2077358..2078974) Shewanella frigidimarina NCIMB 400 4277549 YP_750459.1 CDS Sfri_1771 NC_008345.1 2079251 2079961 D KEGG: son:SO2241 hypothetical protein; hypothetical protein 2079251..2079961 Shewanella frigidimarina NCIMB 400 4277550 YP_750460.1 CDS Sfri_1772 NC_008345.1 2080049 2081086 D PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO2244 transcriptional regulator, LacI family; transcriptional regulator, LacI family protein 2080049..2081086 Shewanella frigidimarina NCIMB 400 4277551 YP_750461.1 CDS Sfri_1773 NC_008345.1 2081283 2082215 D PFAM: protein of unknown function DUF808; KEGG: son:SO1151 hypothetical protein; hypothetical protein 2081283..2082215 Shewanella frigidimarina NCIMB 400 4277552 YP_750462.1 CDS Sfri_1774 NC_008345.1 2082381 2082776 R PFAM: protein of unknown function DUF805; KEGG: stm:STM3234 putative inner membrane protein; hypothetical protein complement(2082381..2082776) Shewanella frigidimarina NCIMB 400 4277553 YP_750463.1 CDS Sfri_1775 NC_008345.1 2082950 2085412 R PFAM: glycoside hydrolase 15-related; KEGG: son:SO2459 glucoamylase; glucan 1,4-alpha-glucosidase complement(2082950..2085412) Shewanella frigidimarina NCIMB 400 4277554 YP_750464.1 CDS Sfri_1776 NC_008345.1 2085470 2087029 R PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2458 transporter, putative; major facilitator transporter complement(2085470..2087029) Shewanella frigidimarina NCIMB 400 4277555 YP_750465.1 CDS Sfri_1777 NC_008345.1 2087427 2089520 R KEGG: son:SO2450 alpha-glucosidase; alpha-glucosidase complement(2087427..2089520) Shewanella frigidimarina NCIMB 400 4277556 YP_750466.1 CDS Sfri_1778 NC_008345.1 2089745 2090341 R PFAM: protein of unknown function DUF358; KEGG: ppr:PBPRA1526 hypothetical protein; hypothetical protein complement(2089745..2090341) Shewanella frigidimarina NCIMB 400 4277557 YP_750467.1 CDS Sfri_1779 NC_008345.1 2090743 2091606 R KEGG: cps:CPS_0256 hypothetical protein; hypothetical protein complement(2090743..2091606) Shewanella frigidimarina NCIMB 400 4277558 YP_750468.1 CDS Sfri_1780 NC_008345.1 2091911 2093104 R PFAM: proton/sugar symporter, LacY; major facilitator superfamily MFS_1; KEGG: pab:PAB0874 hypothetical protein; major facilitator transporter complement(2091911..2093104) Shewanella frigidimarina NCIMB 400 4277559 YP_750469.1 CDS Sfri_1781 NC_008345.1 2093495 2094352 D PFAM: UspA domain protein; KEGG: mma:MM3222 hypothetical protein; UspA domain-containing protein 2093495..2094352 Shewanella frigidimarina NCIMB 400 4277420 YP_750470.1 CDS Sfri_1782 NC_008345.1 2094378 2094575 D KEGG: rfr:Rfer_4032 hypothetical protein; hypothetical protein 2094378..2094575 Shewanella frigidimarina NCIMB 400 4277421 YP_750471.1 CDS Sfri_1783 NC_008345.1 2094854 2095096 D KEGG: eca:ECA2743 hypothetical protein; hypothetical protein 2094854..2095096 Shewanella frigidimarina NCIMB 400 4277422 YP_750472.1 CDS Sfri_1784 NC_008345.1 2095550 2097580 R PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: son:SO2156 alpha amylase family protein; alpha amylase, catalytic region complement(2095550..2097580) Shewanella frigidimarina NCIMB 400 4277423 YP_750473.1 CDS Sfri_1785 NC_008345.1 2097631 2099550 R PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: pha:PSHAa1354 alpha-amylase; alpha amylase, catalytic region complement(2097631..2099550) Shewanella frigidimarina NCIMB 400 4277424 YP_750474.1 CDS Sfri_1786 NC_008345.1 2099613 2101136 R PFAM: tryptophan halogenase; KEGG: pha:PSHAa1353 tryptophan halogenase; tryptophan halogenase complement(2099613..2101136) Shewanella frigidimarina NCIMB 400 4277425 YP_750475.1 CDS Sfri_1787 NC_008345.1 2101253 2103973 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa1352 TonB-dependent receptor protein; TonB-dependent receptor complement(2101253..2103973) Shewanella frigidimarina NCIMB 400 4277426 YP_750476.1 CDS Sfri_1788 NC_008345.1 2104478 2106112 D PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: son:SO2213 alpha-glucosidase; alpha amylase 2104478..2106112 Shewanella frigidimarina NCIMB 400 4277427 YP_750477.1 CDS Sfri_1789 NC_008345.1 2106279 2107544 D TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3705 glucose/galactose transporter family protein; glucose/galactose transporter 2106279..2107544 Shewanella frigidimarina NCIMB 400 4277428 YP_750478.1 CDS Sfri_1790 NC_008345.1 2107849 2109063 D PFAM: Fmu (Sun) domain protein; KEGG: son:SO2215 sun protein, putative; Fmu (Sun) domain-containing protein 2107849..2109063 Shewanella frigidimarina NCIMB 400 4277429 YP_750479.1 CDS Sfri_1791 NC_008345.1 2109269 2111542 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO2216 sensory box protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2109269..2111542 Shewanella frigidimarina NCIMB 400 4277430 YP_750480.1 CDS Sfri_1792 NC_008345.1 2112221 2114476 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO2216 sensory box protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2112221..2114476 Shewanella frigidimarina NCIMB 400 4277431 YP_750481.1 CDS Sfri_1793 NC_008345.1 2114600 2115736 R TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: pha:PSHAa1718 alanine dehydrogenase; alanine dehydrogenase complement(2114600..2115736) Shewanella frigidimarina NCIMB 400 4277432 YP_750482.1 CDS Sfri_1794 NC_008345.1 2115898 2116395 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 2115898..2116395 Shewanella frigidimarina NCIMB 400 4277433 YP_750483.1 CDS Sfri_1795 NC_008345.1 2116668 2119322 D PFAM: cell divisionFtsK/SpoIIIE; KEGG: son:SO2306 cell division protein FtsK, putative; cell division protein FtsK 2116668..2119322 Shewanella frigidimarina NCIMB 400 4277434 YP_750484.1 CDS Sfri_1796 NC_008345.1 2119334 2119978 D PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: son:SO2307 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 2119334..2119978 Shewanella frigidimarina NCIMB 400 4277435 YP_750485.1 CDS Sfri_1797 NC_008345.1 2119987 2121318 D PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO2308 ATPase, AAA family; recombination factor protein RarA 2119987..2121318 Shewanella frigidimarina NCIMB 400 4277436 YP_750486.1 CDS Sfri_1798 NC_008345.1 2121311 2121685 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2121311..2121685 Shewanella frigidimarina NCIMB 400 4277437 YP_750487.1 CDS Sfri_1799 NC_008345.1 2121704 2122990 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2121704..2122990 Shewanella frigidimarina NCIMB 400 4277438 YP_750488.1 CDS Sfri_1800 NC_008345.1 2123475 2123813 R PFAM: DsrC family protein; KEGG: son:SO2379 putative sulfite reductase; DsrC family protein complement(2123475..2123813) Shewanella frigidimarina NCIMB 400 4277439 YP_750489.1 CDS Sfri_1801 NC_008345.1 2123807 2124115 R KEGG: son:SO2378 putative uncharacterized protein involved in oxidation of intracellular sulfur; hypothetical protein complement(2123807..2124115) Shewanella frigidimarina NCIMB 400 4277440 YP_750490.1 CDS Sfri_1802 NC_008345.1 2124112 2124468 R PFAM: DsrE family protein; KEGG: son:SO2377 putative uncharacterized protein involved in oxidation of intracellular sulfur; DsrE family protein complement(2124112..2124468) Shewanella frigidimarina NCIMB 400 4277441 YP_750491.1 CDS Sfri_1803 NC_008345.1 2124488 2124877 R PFAM: DsrE family protein; KEGG: son:SO2376 DsrE-related protein; DsrE family protein complement(2124488..2124877) Shewanella frigidimarina NCIMB 400 4277442 YP_750492.1 CDS Sfri_1804 NC_008345.1 2124943 2125602 R PFAM: protein of unknown function UPF0005; KEGG: son:SO2375 membrane protein, putative; hypothetical protein complement(2124943..2125602) Shewanella frigidimarina NCIMB 400 4277443 YP_750493.1 CDS Sfri_1805 NC_008345.1 2125820 2126722 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2374 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator complement(2125820..2126722) Shewanella frigidimarina NCIMB 400 4277444 YP_750494.1 CDS Sfri_1806 NC_008345.1 2127797 2128474 D KEGG: nmu:Nmul_A0181 hypothetical protein; hypothetical protein 2127797..2128474 Shewanella frigidimarina NCIMB 400 4277445 YP_750495.1 CDS Sfri_1807 NC_008345.1 2128486 2130168 D PFAM: ABC-1 domain protein; KEGG: xcb:XC_2511 ubiquinone biosynthesis protein; hypothetical protein 2128486..2130168 Shewanella frigidimarina NCIMB 400 4277446 YP_750496.1 CDS Sfri_1808 NC_008345.1 2130914 2132458 D PFAM: chemotaxis sensory transducer; KEGG: cps:CPS_4961 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2130914..2132458 Shewanella frigidimarina NCIMB 400 4277447 YP_750497.1 CDS Sfri_1809 NC_008345.1 2133187 2134767 D TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vfi:VF2515 glycine betaine transporter; choline/carnitine/betaine transporter 2133187..2134767 Shewanella frigidimarina NCIMB 400 4277448 YP_750498.1 CDS Sfri_1810 NC_008345.1 2134885 2135601 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(2134885..2135601) Shewanella frigidimarina NCIMB 400 4277449 YP_750499.1 CDS Sfri_1811 NC_008345.1 2135612 2137489 R PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: vfi:VF2513 cyclic nucleotide binding protein/2 CBS domains; cyclic nucleotide-binding protein complement(2135612..2137489) Shewanella frigidimarina NCIMB 400 4277450 YP_750500.1 CDS Sfri_1812 NC_008345.1 2137928 2139133 R PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_0817 hypothetical protein; hypothetical protein complement(2137928..2139133) Shewanella frigidimarina NCIMB 400 4277451 YP_750501.1 CDS Sfri_1813 NC_008345.1 2139133 2139843 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1413 ABC transporter ATPase; ABC transporter complement(2139133..2139843) Shewanella frigidimarina NCIMB 400 4277452 YP_750502.1 CDS Sfri_1814 NC_008345.1 2139852 2141150 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tbd:Tbd_1414 secretion protein HlyD; RND family efflux transporter MFP subunit complement(2139852..2141150) Shewanella frigidimarina NCIMB 400 4277453 YP_750503.1 CDS Sfri_1815 NC_008345.1 2141736 2142707 D PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: pha:PSHAa2878 curved DNA-binding protein, co-chaperone of DnaK (HSP40); heat shock protein DnaJ domain-containing protein 2141736..2142707 Shewanella frigidimarina NCIMB 400 4277454 YP_750504.1 CDS Sfri_1816 NC_008345.1 2142710 2143027 D KEGG: pha:PSHAa2877 hypothetical protein; hypothetical protein 2142710..2143027 Shewanella frigidimarina NCIMB 400 4278084 YP_750505.1 CDS Sfri_1817 NC_008345.1 2143466 2144704 D KEGG: dps:DP0206 probable glycine betaine/L-proline transport ATP-binding protein (ProV); TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 2143466..2144704 Shewanella frigidimarina NCIMB 400 4278085 YP_750506.1 CDS Sfri_1818 NC_008345.1 2144731 2145582 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP0207 probable glycine betaine/L-proline transport system permease protein (ProW); binding-protein-dependent transport system inner membrane protein 2144731..2145582 Shewanella frigidimarina NCIMB 400 4278086 YP_750507.1 CDS proX NC_008345.1 2145579 2146613 D with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 2145579..2146613 Shewanella frigidimarina NCIMB 400 4278087 YP_750508.1 CDS proX NC_008345.1 2146961 2147995 D with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 2146961..2147995 Shewanella frigidimarina NCIMB 400 4278088 YP_750509.1 CDS Sfri_1821 NC_008345.1 2148238 2149419 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; KEGG: cac:CAC0490 predicted sugar kinase, N-terminal region - uncharacterized conserved protein; carbohydrate kinase complement(2148238..2149419) Shewanella frigidimarina NCIMB 400 4278089 YP_750510.1 CDS Sfri_1822 NC_008345.1 2149707 2150837 D KEGG: cps:CPS_1821 acyltransferase family protein; hypothetical protein 2149707..2150837 Shewanella frigidimarina NCIMB 400 4278090 YP_750511.1 CDS Sfri_1823 NC_008345.1 2150912 2152129 R PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cps:CPS_4619 HD domain protein; metal dependent phosphohydrolase complement(2150912..2152129) Shewanella frigidimarina NCIMB 400 4278091 YP_750512.1 CDS Sfri_1824 NC_008345.1 2152471 2153256 R PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: ppu:PP1869 hypothetical protein; extradiol ring-cleavage dioxygenase III subunit B complement(2152471..2153256) Shewanella frigidimarina NCIMB 400 4278092 YP_750513.1 CDS Sfri_1825 NC_008345.1 2153334 2154281 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_0421 transcription regulator, LysR family; transcriptional regulator, LysR family protein complement(2153334..2154281) Shewanella frigidimarina NCIMB 400 4278093 YP_750514.1 CDS Sfri_1826 NC_008345.1 2154308 2154733 D PFAM: transmembrane pair domain protein; KEGG: cps:CPS_0422 hypothetical protein; transmembrane pair domain-containing protein 2154308..2154733 Shewanella frigidimarina NCIMB 400 4278094 YP_750515.1 CDS Sfri_1827 NC_008345.1 2154866 2155297 D KEGG: cps:CPS_4709 hypothetical protein; hypothetical protein 2154866..2155297 Shewanella frigidimarina NCIMB 400 4278095 YP_750516.1 CDS Sfri_1828 NC_008345.1 2156065 2156715 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: cps:CPS_3420 DNA-binding response regulator, LuxR family; two component transcriptional regulator, LuxR family protein 2156065..2156715 Shewanella frigidimarina NCIMB 400 4278096 YP_750517.1 CDS Sfri_1829 NC_008345.1 2156724 2160281 R PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cps:CPS_3419 sensory box sensor histidine kinase/response regulator; periplasmic sensor hybrid histidine kinase complement(2156724..2160281) Shewanella frigidimarina NCIMB 400 4278097 YP_750518.1 CDS Sfri_1831 NC_008345.1 2161654 2162463 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_3417 putative branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter 2161654..2162463 Shewanella frigidimarina NCIMB 400 4278098 YP_750519.1 CDS Sfri_1832 NC_008345.1 2162463 2164430 D PFAM: AMP-dependent synthetase and ligase; KEGG: cps:CPS_3416 putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding; AMP-dependent synthetase and ligase 2162463..2164430 Shewanella frigidimarina NCIMB 400 4278099 YP_750520.1 CDS Sfri_1833 NC_008345.1 2164427 2165320 D PFAM: inner-membrane translocator; KEGG: cps:CPS_3415 putative branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 2164427..2165320 Shewanella frigidimarina NCIMB 400 4278100 YP_750521.1 CDS Sfri_1834 NC_008345.1 2165417 2166490 D PFAM: inner-membrane translocator; KEGG: cps:CPS_3414 putative branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 2165417..2166490 Shewanella frigidimarina NCIMB 400 4278101 YP_750522.1 CDS Sfri_1835 NC_008345.1 2166579 2167826 D KEGG: cps:CPS_3413 putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein; putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein 2166579..2167826 Shewanella frigidimarina NCIMB 400 4278102 YP_750523.1 CDS Sfri_1836 NC_008345.1 2167927 2168748 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_3412 putative branched chain amino acid ABC transporter, ATP-binding protein; ABC transporter 2167927..2168748 Shewanella frigidimarina NCIMB 400 4278103 YP_750524.1 CDS Sfri_1837 NC_008345.1 2168811 2170088 D KEGG: cps:CPS_3411 putative phenylacetate-coenzyme A ligase; putative phenylacetate-coenzyme A ligase 2168811..2170088 Shewanella frigidimarina NCIMB 400 4278104 YP_750525.1 CDS Sfri_1838 NC_008345.1 2170446 2170940 D PFAM: thioesterase superfamily protein; KEGG: cps:CPS_3410 hypothetical protein; thioesterase superfamily protein 2170446..2170940 Shewanella frigidimarina NCIMB 400 4278105 YP_750526.1 CDS Sfri_1839 NC_008345.1 2171480 2171938 D KEGG: vfi:VF1080 hypothetical protein; hypothetical protein 2171480..2171938 Shewanella frigidimarina NCIMB 400 4278106 YP_750527.1 CDS Sfri_1840 NC_008345.1 2172379 2172849 D PFAM: Ferritin, Dps family protein; KEGG: tcx:Tcr_1226 ferritin and Dps; Ferritin, Dps family protein 2172379..2172849 Shewanella frigidimarina NCIMB 400 4278107 YP_750528.1 CDS Sfri_1841 NC_008345.1 2173025 2173612 R PFAM: regulatory protein, TetR; KEGG: vfi:VF1081 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein complement(2173025..2173612) Shewanella frigidimarina NCIMB 400 4278108 YP_750529.1 CDS Sfri_1842 NC_008345.1 2174016 2175422 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: pha:PSHAb0545 putative amino acid permease; amino acid carrier protein complement(2174016..2175422) Shewanella frigidimarina NCIMB 400 4278109 YP_750530.1 CDS Sfri_1843 NC_008345.1 2175813 2177186 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4173 sensor histidine kinase; sensor signal transduction histidine kinase 2175813..2177186 Shewanella frigidimarina NCIMB 400 4278110 YP_750531.1 CDS Sfri_1844 NC_008345.1 2177207 2177749 D PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: son:SO4172 DNA-binding response regulator; response regulator receiver protein 2177207..2177749 Shewanella frigidimarina NCIMB 400 4278111 YP_750532.1 CDS Sfri_1845 NC_008345.1 2178319 2179512 D PFAM: transposase, IS4 family protein; KEGG: ret:RHE_CH01332 probable insertion sequence transposase protein, IS10; transposase, IS4 family protein 2178319..2179512 Shewanella frigidimarina NCIMB 400 4278112 YP_750533.1 CDS Sfri_1847 NC_008345.1 2179865 2182477 R KEGG: ava:Ava_2971 WD-40 repeat; hypothetical protein complement(2179865..2182477) Shewanella frigidimarina NCIMB 400 4278113 YP_750534.1 CDS Sfri_1848 NC_008345.1 2182479 2184032 R KEGG: ana:all3488 unknown protein; hypothetical protein complement(2182479..2184032) Shewanella frigidimarina NCIMB 400 4278114 YP_750535.1 CDS Sfri_1849 NC_008345.1 2184907 2186667 D PFAM: protein of unknown function UPF0061; KEGG: pmt:PMT1392 conserved hypotheical protein; hypothetical protein 2184907..2186667 Shewanella frigidimarina NCIMB 400 4278115 YP_750536.1 CDS Sfri_1850 NC_008345.1 2186928 2187578 D KEGG: ilo:IL0571 hypothetical protein; hypothetical protein 2186928..2187578 Shewanella frigidimarina NCIMB 400 4278116 YP_750537.1 CDS Sfri_1851 NC_008345.1 2187571 2188389 D KEGG: pha:PSHAa1929 hypothetical protein; hypothetical protein 2187571..2188389 Shewanella frigidimarina NCIMB 400 4278117 YP_750538.1 CDS Sfri_1852 NC_008345.1 2189032 2189778 D PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: son:SO1520 hypothetical protein; hypothetical protein 2189032..2189778 Shewanella frigidimarina NCIMB 400 4278118 YP_750539.1 CDS Sfri_1853 NC_008345.1 2189787 2191175 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1519 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 2189787..2191175 Shewanella frigidimarina NCIMB 400 4278313 YP_750540.1 CDS Sfri_1854 NC_008345.1 2191177 2191740 D PFAM: protein of unknown function DUF162; KEGG: son:SO1518 hypothetical protein; hypothetical protein 2191177..2191740 Shewanella frigidimarina NCIMB 400 4278314 YP_750541.1 CDS Sfri_1855 NC_008345.1 2192051 2192950 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3460 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(2192051..2192950) Shewanella frigidimarina NCIMB 400 4278315 YP_750542.1 CDS Sfri_1856 NC_008345.1 2193304 2193948 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pha:PSHAa1776 transcriptional regulator; transcriptional regulator, GntR family protein 2193304..2193948 Shewanella frigidimarina NCIMB 400 4278316 YP_750543.1 CDS prpB NC_008345.1 2194005 2194883 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 2194005..2194883 Shewanella frigidimarina NCIMB 400 4278317 YP_750544.1 CDS Sfri_1858 NC_008345.1 2194988 2196112 D KEGG: cps:CPS_2821 putative 2-methylcitrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; 2-methylcitrate synthase/citrate synthase II 2194988..2196112 Shewanella frigidimarina NCIMB 400 4278318 YP_750545.1 CDS Sfri_1859 NC_008345.1 2196179 2198791 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2196179..2198791 Shewanella frigidimarina NCIMB 400 4278319 YP_750546.1 CDS Sfri_1860 NC_008345.1 2198881 2200050 D TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: pfo:Pfl_1767 protein of unknown function DUF453; putative AcnD-accessory protein PrpF 2198881..2200050 Shewanella frigidimarina NCIMB 400 4278320 YP_750547.1 CDS Sfri_1861 NC_008345.1 2200520 2202679 D PFAM: sodium/hydrogen exchanger; KEGG: son:SO2537 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger 2200520..2202679 Shewanella frigidimarina NCIMB 400 4278321 YP_750548.1 CDS bcp NC_008345.1 2202841 2203308 R bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase complement(2202841..2203308) Shewanella frigidimarina NCIMB 400 4278322 YP_750549.1 CDS Sfri_1863 NC_008345.1 2203395 2203931 R KEGG: son:SO1878 glycine cleavage system transcriptional repressor, putative; glycine cleavage system transcriptional repressor complement(2203395..2203931) Shewanella frigidimarina NCIMB 400 4278323 YP_750550.1 CDS Sfri_1864 NC_008345.1 2204215 2205099 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2204215..2205099 Shewanella frigidimarina NCIMB 400 4278324 YP_750551.1 CDS Sfri_1865 NC_008345.1 2205104 2206201 D PFAM: NlpBDapX family lipoprotein; KEGG: son:SO1880 lipoprotein-34 NlpB; NlpB/DapX family lipoprotein 2205104..2206201 Shewanella frigidimarina NCIMB 400 4278325 YP_750552.1 CDS Sfri_1866 NC_008345.1 2206663 2207820 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1881 HlyD family-related protein; RND family efflux transporter MFP subunit 2206663..2207820 Shewanella frigidimarina NCIMB 400 4278326 YP_750553.1 CDS Sfri_1868 NC_008345.1 2211147 2211575 R TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: bur:Bcep18194_A4725 phenylacetic acid degradation-related protein; hypothetical protein complement(2211147..2211575) Shewanella frigidimarina NCIMB 400 4278327 YP_750554.1 CDS fadE NC_008345.1 2211665 2214112 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2211665..2214112) Shewanella frigidimarina NCIMB 400 4278328 YP_750555.1 CDS Sfri_1870 NC_008345.1 2214361 2215137 D PFAM: glutamine amidotransferase, class-II; KEGG: son:SO2535 hypothetical amidotransferase; glutamine amidotransferase, class-II 2214361..2215137 Shewanella frigidimarina NCIMB 400 4278329 YP_750556.1 CDS Sfri_1871 NC_008345.1 2215123 2216082 R KEGG: son:SO2533 hypothetical protein; hypothetical protein complement(2215123..2216082) Shewanella frigidimarina NCIMB 400 4278330 YP_750557.1 CDS Sfri_1872 NC_008345.1 2216158 2216574 R PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: son:SO2532 methylated-DNA--protein-cysteine methyltransferase, putative; methylated-DNA--protein-cysteine methyltransferase complement(2216158..2216574) Shewanella frigidimarina NCIMB 400 4278331 YP_750558.1 CDS Sfri_1873 NC_008345.1 2216619 2217302 R TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: son:SO2447 channel protein, hemolysin III family subfamily; hemolysin III family channel protein complement(2216619..2217302) Shewanella frigidimarina NCIMB 400 4278332 YP_750559.1 CDS Sfri_1874 NC_008345.1 2217557 2218195 D hypothetical protein 2217557..2218195 Shewanella frigidimarina NCIMB 400 4278333 YP_750560.1 CDS Sfri_1875 NC_008345.1 2218267 2218896 R PFAM: Rhomboid family protein; KEGG: son:SO2504 hypothetical protein; rhomboid family protein complement(2218267..2218896) Shewanella frigidimarina NCIMB 400 4278334 YP_750561.1 CDS Sfri_1876 NC_008345.1 2219082 2219789 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: son:SO2503 ExsB protein; exsB protein complement(2219082..2219789) Shewanella frigidimarina NCIMB 400 4278335 YP_750562.1 CDS Sfri_1877 NC_008345.1 2220000 2220668 D KEGG: son:SO2501 radical activating enzyme; radical activating enzyme 2220000..2220668 Shewanella frigidimarina NCIMB 400 4278336 YP_750563.1 CDS Sfri_1878 NC_008345.1 2220763 2221824 R PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: vch:VC1061 cysteine synthase/cystathionine beta-synthase family protein; pyridoxal-5'-phosphate-dependent protein subunit beta complement(2220763..2221824) Shewanella frigidimarina NCIMB 400 4278337 YP_750564.1 CDS Sfri_1879 NC_008345.1 2222670 2223158 D KEGG: son:SO2500 hypothetical protein; hypothetical protein 2222670..2223158 Shewanella frigidimarina NCIMB 400 4278338 YP_750565.1 CDS Sfri_1880 NC_008345.1 2223887 2224846 D KEGG: hch:HCH_01260 hypothetical protein; hypothetical protein 2223887..2224846 Shewanella frigidimarina NCIMB 400 4278339 YP_750566.1 CDS Sfri_1882 NC_008345.1 2225555 2225842 D KEGG: son:SO2499 hypothetical protein; hypothetical protein 2225555..2225842 Shewanella frigidimarina NCIMB 400 4278340 YP_750567.1 CDS Sfri_1883 NC_008345.1 2226182 2228386 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO2498 sensory box protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2226182..2228386 Shewanella frigidimarina NCIMB 400 4278341 YP_750568.1 CDS Sfri_1884 NC_008345.1 2228584 2229075 R PFAM: SEC-C motif domain protein; KEGG: son:SO2497 conserved hypothetical protein; SecC motif-containing protein complement(2228584..2229075) Shewanella frigidimarina NCIMB 400 4278342 YP_750569.1 CDS Sfri_1885 NC_008345.1 2229080 2229640 R KEGG: son:SO2495.1 hypothetical protein; hypothetical protein complement(2229080..2229640) Shewanella frigidimarina NCIMB 400 4278343 YP_750570.1 CDS Sfri_1886 NC_008345.1 2229793 2230395 D PFAM: Smr protein/MutS2; KEGG: son:SO2495 Smr domain protein; Smr protein/MutS2 2229793..2230395 Shewanella frigidimarina NCIMB 400 4278344 YP_750571.1 CDS Sfri_1887 NC_008345.1 2230607 2232448 R PFAM: peptidase M2, peptidyl-dipeptidase A; KEGG: son:SO2494 zinc-dependent metallopeptidase; peptidyl-dipeptidase A complement(2230607..2232448) Shewanella frigidimarina NCIMB 400 4278345 YP_750572.1 CDS Sfri_1888 NC_008345.1 2232644 2233285 D PFAM: regulatory protein, TetR; KEGG: son:SO2493 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein 2232644..2233285 Shewanella frigidimarina NCIMB 400 4278346 YP_750573.1 CDS Sfri_1889 NC_008345.1 2233297 2235573 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2233297..2235573 Shewanella frigidimarina NCIMB 400 4278347 YP_750574.1 CDS Sfri_1890 NC_008345.1 2235850 2237289 R PFAM: pyruvate kinase; KEGG: son:SO2491 pyruvate kinase II; pyruvate kinase complement(2235850..2237289) Shewanella frigidimarina NCIMB 400 4278802 YP_750575.1 CDS Sfri_1891 NC_008345.1 2237719 2238573 R Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR complement(2237719..2238573) Shewanella frigidimarina NCIMB 400 4278803 YP_750576.1 CDS Sfri_1892 NC_008345.1 2238911 2240380 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2238911..2240380 Shewanella frigidimarina NCIMB 400 4278804 YP_750577.1 CDS Sfri_1893 NC_008345.1 2240390 2241088 D TIGRFAM: 6-phosphogluconolactonase; KEGG: son:SO2488 6-phosphogluconolactonase; 6-phosphogluconolactonase 2240390..2241088 Shewanella frigidimarina NCIMB 400 4278805 YP_750578.1 CDS Sfri_1894 NC_008345.1 2241100 2242926 D catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2241100..2242926 Shewanella frigidimarina NCIMB 400 4278806 YP_750579.1 CDS Sfri_1895 NC_008345.1 2242948 2243592 D catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 2242948..2243592 Shewanella frigidimarina NCIMB 400 4278807 YP_750580.1 CDS Sfri_1896 NC_008345.1 2243860 2244372 D KEGG: son:SO4492 hypothetical protein; hypothetical protein 2243860..2244372 Shewanella frigidimarina NCIMB 400 4278808 YP_750581.1 CDS Sfri_1897 NC_008345.1 2244642 2245337 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: dps:DP1920 hypothetical protein; aspartate racemase 2244642..2245337 Shewanella frigidimarina NCIMB 400 4278809 YP_750582.1 CDS Sfri_1898 NC_008345.1 2245498 2248095 R PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: son:SO2136 aldehyde-alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(2245498..2248095) Shewanella frigidimarina NCIMB 400 4278810 YP_750583.1 CDS Sfri_1899 NC_008345.1 2248823 2249524 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pha:PSHAb0206 putative unknown enzyme; HAD family hydrolase 2248823..2249524 Shewanella frigidimarina NCIMB 400 4278811 YP_750584.1 CDS Sfri_1900 NC_008345.1 2249526 2250488 D PFAM: putative sugar-binding domain protein; KEGG: pha:PSHAa1504 transcriptional regulator; DeoR family transcriptional regulator 2249526..2250488 Shewanella frigidimarina NCIMB 400 4278812 YP_750585.1 CDS Sfri_1901 NC_008345.1 2250689 2252425 D KEGG: pha:PSHAb0207 putative nucleoside transport protein; putative nucleoside transport protein 2250689..2252425 Shewanella frigidimarina NCIMB 400 4278813 YP_750586.1 CDS Sfri_1902 NC_008345.1 2252400 2253593 R PFAM: transposase, IS4 family protein; KEGG: ret:RHE_CH01332 probable insertion sequence transposase protein, IS10; transposase, IS4 family protein complement(2252400..2253593) Shewanella frigidimarina NCIMB 400 4278814 YP_750587.1 CDS Sfri_1903 NC_008345.1 2253894 2255414 D PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase rossman, N-terminal domain protein; KEGG: pha:PSHAb0208 D-mannonate oxidoreductase; mannitol dehydrogenase domain-containing protein 2253894..2255414 Shewanella frigidimarina NCIMB 400 4278815 YP_750588.1 CDS Sfri_1904 NC_008345.1 2255420 2256340 D PFAM: PfkB domain protein; KEGG: pha:PSHAb0209 putative carbohydrate kinase; ribokinase-like domain-containing protein 2255420..2256340 Shewanella frigidimarina NCIMB 400 4278816 YP_750589.1 CDS Sfri_1905 NC_008345.1 2256483 2257859 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(2256483..2257859) Shewanella frigidimarina NCIMB 400 4278817 YP_750590.1 CDS Sfri_1906 NC_008345.1 2257869 2258456 R PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO2484 hypothetical protein; hypothetical protein complement(2257869..2258456) Shewanella frigidimarina NCIMB 400 4278818 YP_750591.1 CDS Sfri_1907 NC_008345.1 2258569 2259783 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(2258569..2259783) Shewanella frigidimarina NCIMB 400 4278819 YP_750592.1 CDS Sfri_1908 NC_008345.1 2260064 2260624 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(2260064..2260624) Shewanella frigidimarina NCIMB 400 4278820 YP_750593.1 CDS Sfri_1909 NC_008345.1 2260674 2261861 R KEGG: son:SO2329 hypothetical protein; hypothetical protein complement(2260674..2261861) Shewanella frigidimarina NCIMB 400 4278821 YP_750594.1 CDS Sfri_1910 NC_008345.1 2261955 2262482 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(2261955..2262482) Shewanella frigidimarina NCIMB 400 4278822 YP_750595.1 CDS Sfri_1911 NC_008345.1 2262533 2262805 R PFAM: CopG domain protein DNA-binding domain protein; KEGG: son:SO2331 hypothetical protein; LexA regulated protein complement(2262533..2262805) Shewanella frigidimarina NCIMB 400 4278823 YP_750596.1 CDS Sfri_1912 NC_008345.1 2262814 2263035 R KEGG: son:SO2332 hypothetical protein; hypothetical protein complement(2262814..2263035) Shewanella frigidimarina NCIMB 400 4278824 YP_750597.1 CDS Sfri_1913 NC_008345.1 2263134 2263907 R PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: son:SO2333 hydrolase, alpha/beta fold family; alpha/beta hydrolase complement(2263134..2263907) Shewanella frigidimarina NCIMB 400 4278825 YP_750598.1 CDS Sfri_1914 NC_008345.1 2264213 2264839 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 2264213..2264839 Shewanella frigidimarina NCIMB 400 4278826 YP_750599.1 CDS Sfri_1915 NC_008345.1 2264894 2266537 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2264894..2266537 Shewanella frigidimarina NCIMB 400 4278827 YP_750600.1 CDS Sfri_1916 NC_008345.1 2266708 2267115 D KEGG: pha:PSHAa2581 hypothetical protein; hypothetical protein 2266708..2267115 Shewanella frigidimarina NCIMB 400 4278828 YP_750601.1 CDS Sfri_1917 NC_008345.1 2267196 2269412 R KEGG: son:SO4405 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI complement(2267196..2269412) Shewanella frigidimarina NCIMB 400 4278829 YP_750602.1 CDS Sfri_1918 NC_008345.1 2269609 2271171 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: vpa:VPA0609 hypothetical protein; diguanylate cyclase/phosphodiesterase complement(2269609..2271171) Shewanella frigidimarina NCIMB 400 4278830 YP_750603.1 CDS Sfri_1919 NC_008345.1 2271604 2273016 R KEGG: dar:Daro_1852 hypothetical protein; hypothetical protein complement(2271604..2273016) Shewanella frigidimarina NCIMB 400 4278831 YP_750604.1 CDS Sfri_1920 NC_008345.1 2273286 2274950 R KEGG: son:SO2394 penicillin-binding protein 4; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(2273286..2274950) Shewanella frigidimarina NCIMB 400 4278832 YP_750605.1 CDS pssA NC_008345.1 2275562 2276902 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2275562..2276902 Shewanella frigidimarina NCIMB 400 4278833 YP_750606.1 CDS Sfri_1922 NC_008345.1 2276974 2277777 D PFAM: DTW domain containing protein; KEGG: son:SO2387 conserved hypothetical protein; DTW domain-containing protein 2276974..2277777 Shewanella frigidimarina NCIMB 400 4278834 YP_750607.1 CDS Sfri_1923 NC_008345.1 2277928 2278287 D KEGG: son:SO2381 hypothetical protein; hypothetical protein 2277928..2278287 Shewanella frigidimarina NCIMB 400 4278835 YP_750608.1 CDS Sfri_1924 NC_008345.1 2278417 2280426 D TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2380 RecQ domain protein; ATP-dependent DNA helicase, RecQ family protein 2278417..2280426 Shewanella frigidimarina NCIMB 400 4278836 YP_750609.1 CDS Sfri_1925 NC_008345.1 2280423 2280698 D KEGG: vfi:VF0709 hypothetical protein; hypothetical protein 2280423..2280698 Shewanella frigidimarina NCIMB 400 4278837 YP_750610.1 CDS Sfri_1926 NC_008345.1 2281014 2281580 R serine protease inhibitor, inhibits trypsin and other proteases; ecotin complement(2281014..2281580) Shewanella frigidimarina NCIMB 400 4278838 YP_750611.1 CDS Sfri_1927 NC_008345.1 2281991 2283013 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2049 GGDEF family protein; diguanylate cyclase 2281991..2283013 Shewanella frigidimarina NCIMB 400 4278839 YP_750612.1 CDS Sfri_1928 NC_008345.1 2283178 2285880 R PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: son:SO2116 acetyltransferase, GNAT family; CoA-binding domain-containing protein complement(2283178..2285880) Shewanella frigidimarina NCIMB 400 4278840 YP_750613.1 CDS Sfri_1929 NC_008345.1 2286144 2289329 R PFAM: acriflavin resistance protein; KEGG: cps:CPS_4483 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(2286144..2289329) Shewanella frigidimarina NCIMB 400 4278841 YP_750614.1 CDS Sfri_1930 NC_008345.1 2289335 2290522 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cps:CPS_4484 efflux transporter, RND family, MFP subunit subfamily; RND family efflux transporter MFP subunit complement(2289335..2290522) Shewanella frigidimarina NCIMB 400 4278842 YP_750615.1 CDS Sfri_1931 NC_008345.1 2290702 2291262 D PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_0919 hypothetical protein; N-acetyltransferase GCN5 2290702..2291262 Shewanella frigidimarina NCIMB 400 4278843 YP_750616.1 CDS Sfri_1932 NC_008345.1 2291327 2292280 R TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO2303 thioredoxin reductase; thioredoxin reductase complement(2291327..2292280) Shewanella frigidimarina NCIMB 400 4278844 YP_750617.1 CDS Sfri_1933 NC_008345.1 2292482 2292961 R KEGG: son:SO2337 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase complement(2292482..2292961) Shewanella frigidimarina NCIMB 400 4278845 YP_750618.1 CDS Sfri_1934 NC_008345.1 2293183 2294211 D catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 2293183..2294211 Shewanella frigidimarina NCIMB 400 4278846 YP_750619.1 CDS Sfri_1935 NC_008345.1 2294368 2295546 D PFAM: dehydrogenase, E1 component; KEGG: son:SO2339 alpha keto acid dehydrogenase complex, E1 component, alpha subunit; 3-methyl-2-oxobutanoate dehydrogenase 2294368..2295546 Shewanella frigidimarina NCIMB 400 4278847 YP_750620.1 CDS Sfri_1936 NC_008345.1 2295550 2296527 D PFAM: Transketolase, central region; Transketolase domain protein; KEGG: son:SO2340 alpha keto acid dehydrogenase complex, E1 component, beta subunit; transketolase, central region 2295550..2296527 Shewanella frigidimarina NCIMB 400 4278848 YP_750621.1 CDS Sfri_1937 NC_008345.1 2296537 2298159 D PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: son:SO2341 alpha keto acid dehydrogenase complex, E2 component; dihydrolipoamide acetyltransferase 2296537..2298159 Shewanella frigidimarina NCIMB 400 4278849 YP_750622.1 CDS Sfri_1938 NC_008345.1 2298262 2299329 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2298262..2299329 Shewanella frigidimarina NCIMB 400 4278850 YP_750623.1 CDS Sfri_1939 NC_008345.1 2299505 2301421 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4053 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2299505..2301421) Shewanella frigidimarina NCIMB 400 4278851 YP_750624.1 CDS Sfri_1940 NC_008345.1 2302010 2303020 R KEGG: son:SO2345 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(2302010..2303020) Shewanella frigidimarina NCIMB 400 4278852 YP_750625.1 CDS Sfri_1941 NC_008345.1 2303251 2304081 R KEGG: son:SO2346 hypothetical protein; hypothetical protein complement(2303251..2304081) Shewanella frigidimarina NCIMB 400 4278853 YP_750626.1 CDS Sfri_1942 NC_008345.1 2304282 2305718 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 2304282..2305718 Shewanella frigidimarina NCIMB 400 4278854 YP_750627.1 CDS Sfri_1943 NC_008345.1 2306879 2307364 R PFAM: regulatory protein, MarR; KEGG: cps:CPS_1337 transcriptional regulator, MarR family; transcriptional regulator, MarR family protein complement(2306879..2307364) Shewanella frigidimarina NCIMB 400 4278855 YP_750628.1 CDS Sfri_1944 NC_008345.1 2307490 2308197 R TIGRFAM: conserved hypothetical protein; KEGG: cps:CPS_4008 hypothetical protein; hypothetical protein complement(2307490..2308197) Shewanella frigidimarina NCIMB 400 4278856 YP_750629.1 CDS Sfri_1945 NC_008345.1 2308225 2309442 R KEGG: cps:CPS_1335 putative transporter, BCCT family protein; putative transporter, BCCT family protein complement(2308225..2309442) Shewanella frigidimarina NCIMB 400 4278857 YP_750630.1 CDS Sfri_1946 NC_008345.1 2309678 2311360 R catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase complement(2309678..2311360) Shewanella frigidimarina NCIMB 400 4278858 YP_750631.1 CDS Sfri_1947 NC_008345.1 2311375 2312841 R catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase complement(2311375..2312841) Shewanella frigidimarina NCIMB 400 4278859 YP_750632.1 CDS Sfri_1948 NC_008345.1 2312841 2313437 R HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI complement(2312841..2313437) Shewanella frigidimarina NCIMB 400 4278860 YP_750633.1 CDS Sfri_1949 NC_008345.1 2314169 2314375 D KEGG: cps:CPS_2680 hypothetical protein; hypothetical protein 2314169..2314375 Shewanella frigidimarina NCIMB 400 4278861 YP_750634.1 CDS Sfri_1950 NC_008345.1 2315241 2315834 D PFAM: phage integrase family protein; KEGG: cps:CPS_2062 site-specific recombinase, phage integrase family; phage integrase family protein 2315241..2315834 Shewanella frigidimarina NCIMB 400 4278862 YP_750635.1 CDS Sfri_1951 NC_008345.1 2315997 2317100 D PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: vvy:VV0273 hypothetical protein; helix-turn-helix domain-containing protein 2315997..2317100 Shewanella frigidimarina NCIMB 400 4278863 YP_750636.1 CDS Sfri_1952 NC_008345.1 2317081 2317575 D KEGG: vvy:VV0274 hypothetical protein; hypothetical protein 2317081..2317575 Shewanella frigidimarina NCIMB 400 4278864 YP_750637.1 CDS Sfri_1953 NC_008345.1 2317631 2319202 D TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: plu:plu4319 type I site-specific deoxyribonuclease HsdM; type I restriction-modification system, M subunit 2317631..2319202 Shewanella frigidimarina NCIMB 400 4278865 YP_750638.1 CDS Sfri_1954 NC_008345.1 2319199 2320419 D PFAM: restriction modification system DNA specificity domain; KEGG: hit:NTHI0315 putative type I restriction-modification system specificity protein; restriction modification system DNA specificity subunit 2319199..2320419 Shewanella frigidimarina NCIMB 400 4278866 YP_750639.1 CDS Sfri_1955 NC_008345.1 2320508 2321509 D PFAM: filamentation induced by cAMP protein Fic; KEGG: tde:TDE2641 Fic family protein; filamentation induced by cAMP protein fic 2320508..2321509 Shewanella frigidimarina NCIMB 400 4278867 YP_750640.1 CDS Sfri_1956 NC_008345.1 2321573 2324686 D KEGG: plu:plu4322 type I site-specific deoxyribonuclease HsdR; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain protein; type I site-specific deoxyribonuclease, HsdR family protein 2321573..2324686 Shewanella frigidimarina NCIMB 400 4278868 YP_750641.1 CDS Sfri_1957 NC_008345.1 2325190 2326515 D hypothetical protein 2325190..2326515 Shewanella frigidimarina NCIMB 400 4278869 YP_750642.1 CDS Sfri_1958 NC_008345.1 2326702 2328771 R PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: cps:CPS_1440 neutral zinc metallopeptidase, M13 family; endothelin-converting protein 1 complement(2326702..2328771) Shewanella frigidimarina NCIMB 400 4278870 YP_750643.1 CDS Sfri_1959 NC_008345.1 2329255 2329854 R PFAM: protein of unknown function DUF330; KEGG: mca:MCA0364 lipoprotein, putative; hypothetical protein complement(2329255..2329854) Shewanella frigidimarina NCIMB 400 4278871 YP_750644.1 CDS Sfri_1960 NC_008345.1 2329859 2330842 R PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_1983 putative paraquat-inducible protein B; hypothetical protein complement(2329859..2330842) Shewanella frigidimarina NCIMB 400 4278872 YP_750645.1 CDS Sfri_1961 NC_008345.1 2330839 2331603 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1984 ATPase; ABC transporter complement(2330839..2331603) Shewanella frigidimarina NCIMB 400 4278873 YP_750646.1 CDS Sfri_1962 NC_008345.1 2331606 2332718 R PFAM: protein of unknown function DUF140; KEGG: dde:Dde_1985 ABC transporter permease protein; hypothetical protein complement(2331606..2332718) Shewanella frigidimarina NCIMB 400 4278874 YP_750647.1 CDS Sfri_1963 NC_008345.1 2333041 2333454 D PFAM: peptidase S24, S26A and S26B; KEGG: son:SOA0013 umuD protein; putative prophage repressor 2333041..2333454 Shewanella frigidimarina NCIMB 400 4278875 YP_750648.1 CDS Sfri_1964 NC_008345.1 2333461 2334717 D PFAM: UMUC domain protein DNA-repair protein; KEGG: son:SOA0012 umuC protein; DNA-directed DNA polymerase 2333461..2334717 Shewanella frigidimarina NCIMB 400 4278876 YP_750649.1 CDS Sfri_1965 NC_008345.1 2334858 2335235 D hypothetical protein 2334858..2335235 Shewanella frigidimarina NCIMB 400 4278877 YP_750650.1 CDS Sfri_1966 NC_008345.1 2335339 2335773 D KEGG: son:SO4593 hypothetical protein; hypothetical protein 2335339..2335773 Shewanella frigidimarina NCIMB 400 4278878 YP_750651.1 CDS Sfri_1967 NC_008345.1 2335886 2336317 D KEGG: pha:PSHAa0302 hypothetical protein; hypothetical protein 2335886..2336317 Shewanella frigidimarina NCIMB 400 4278879 YP_750652.1 CDS Sfri_1968 NC_008345.1 2336453 2336968 D PFAM: protein of unknown function DUF411; KEGG: par:Psyc_1592 hypothetical protein; hypothetical protein 2336453..2336968 Shewanella frigidimarina NCIMB 400 4278880 YP_750653.1 CDS Sfri_1969 NC_008345.1 2336965 2338938 D TIGRFAM: Twin-arginine translocation pathway signal; copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: ppu:PP5380 copper resistance protein A; copper-resistance protein, CopA family protein 2336965..2338938 Shewanella frigidimarina NCIMB 400 4278881 YP_750654.1 CDS Sfri_1970 NC_008345.1 2338950 2339663 D PFAM: copper resistance B precursor; KEGG: tbd:Tbd_1325 probable copper resistance protein B; copper resistance B precursor 2338950..2339663 Shewanella frigidimarina NCIMB 400 4278882 YP_750655.1 CDS Sfri_1971 NC_008345.1 2339779 2340201 D PFAM: copper resistance protein CopC; KEGG: pha:PSHAb0009 putative copper resistance (CopC-like); copper resistance protein CopC 2339779..2340201 Shewanella frigidimarina NCIMB 400 4278883 YP_750656.1 CDS Sfri_1972 NC_008345.1 2340216 2341136 D PFAM: copper resistance D domain protein; KEGG: pha:PSHAb0008 putative copper export protein; copper resistance D domain-containing protein 2340216..2341136 Shewanella frigidimarina NCIMB 400 4278884 YP_750657.1 CDS Sfri_1973 NC_008345.1 2341212 2341655 D KEGG: pha:PSHAb0007 putative orphan protein; putative orphan protein 2341212..2341655 Shewanella frigidimarina NCIMB 400 4278885 YP_750658.1 CDS Sfri_1974 NC_008345.1 2342040 2342258 D KEGG: ppr:PBPRB1405 putative DNA-binding protein; putative DNA-binding protein 2342040..2342258 Shewanella frigidimarina NCIMB 400 4278886 YP_750659.1 CDS Sfri_1975 NC_008345.1 2342255 2342803 D KEGG: vfi:VF1433 hypothetical protein; hypothetical protein 2342255..2342803 Shewanella frigidimarina NCIMB 400 4278887 YP_750660.1 CDS Sfri_1976 NC_008345.1 2342841 2344157 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: cps:CPS_1875 sigma-54 dependent transcriptional regulator; sigma54 specific transcriptional regulator, Fis family protein complement(2342841..2344157) Shewanella frigidimarina NCIMB 400 4278888 YP_750661.1 CDS Sfri_1977 NC_008345.1 2344469 2345113 D KEGG: cps:CPS_1881 hypothetical protein; hypothetical protein 2344469..2345113 Shewanella frigidimarina NCIMB 400 4278889 YP_750662.1 CDS Sfri_1978 NC_008345.1 2345391 2346257 D PFAM: beta-lactamase domain protein; KEGG: pmu:PM1479 hypothetical Synechosystis sp.; beta-lactamase domain-containing protein 2345391..2346257 Shewanella frigidimarina NCIMB 400 4278890 YP_750663.1 CDS Sfri_1979 NC_008345.1 2346376 2346780 R PFAM: Rhodanese domain protein; KEGG: ilo:IL1695 rhodanese-related sulfurtransferase; rhodanese domain-containing protein complement(2346376..2346780) Shewanella frigidimarina NCIMB 400 4278891 YP_750664.1 CDS Sfri_1980 NC_008345.1 2346796 2347548 R PFAM: protein of unknown function DUF81; KEGG: ttj:TTHA0835 conserved hypothetical membrane protein; hypothetical protein complement(2346796..2347548) Shewanella frigidimarina NCIMB 400 4278892 YP_750665.1 CDS Sfri_1981 NC_008345.1 2347563 2348432 R PFAM: beta-lactamase domain protein; KEGG: ilo:IL1442 Zn-dependent hydrolase, glyoxylase family; beta-lactamase domain-containing protein complement(2347563..2348432) Shewanella frigidimarina NCIMB 400 4278893 YP_750666.1 CDS Sfri_1982 NC_008345.1 2348489 2349130 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rpb:RPB_4601 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; peroxidase complement(2348489..2349130) Shewanella frigidimarina NCIMB 400 4278894 YP_750667.1 CDS Sfri_1983 NC_008345.1 2349635 2350555 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2409 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 2349635..2350555 Shewanella frigidimarina NCIMB 400 4278895 YP_750668.1 CDS Sfri_1984 NC_008345.1 2350740 2351702 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: son:SO2408 radical activating enzyme; radical SAM domain-containing protein complement(2350740..2351702) Shewanella frigidimarina NCIMB 400 4278896 YP_750669.1 CDS Sfri_1985 NC_008345.1 2351695 2353263 R KEGG: son:SO2407 hypothetical protein; hypothetical protein complement(2351695..2353263) Shewanella frigidimarina NCIMB 400 4278897 YP_750670.1 CDS Sfri_1986 NC_008345.1 2353623 2354546 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tcx:Tcr_0379 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; diguanylate cyclase complement(2353623..2354546) Shewanella frigidimarina NCIMB 400 4278898 YP_750671.1 CDS Sfri_1987 NC_008345.1 2354543 2355349 R PFAM: alpha/beta hydrolase fold; KEGG: bsu:BG12442 similar to hydrolase; alpha/beta hydrolase complement(2354543..2355349) Shewanella frigidimarina NCIMB 400 4278899 YP_750672.1 CDS Sfri_1988 NC_008345.1 2355843 2357267 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: son:SO2564 transglycosylase, Slt family; lytic transglycosylase, catalytic 2355843..2357267 Shewanella frigidimarina NCIMB 400 4278900 YP_750673.1 CDS Sfri_1989 NC_008345.1 2357583 2358332 D TIGRFAM: conserved hypothetical protein; KEGG: son:SO4694 hypothetical protein; hypothetical protein 2357583..2358332 Shewanella frigidimarina NCIMB 400 4278901 YP_750674.1 CDS Sfri_1990 NC_008345.1 2358532 2359257 D response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 2358532..2359257 Shewanella frigidimarina NCIMB 400 4278902 YP_750675.1 CDS Sfri_1991 NC_008345.1 2359247 2360320 R periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT complement(2359247..2360320) Shewanella frigidimarina NCIMB 400 4278903 YP_750676.1 CDS Sfri_1992 NC_008345.1 2360439 2363438 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: son:SO1230 sensor histidine kinase/response regulator TorS; multi-sensor hybrid histidine kinase 2360439..2363438 Shewanella frigidimarina NCIMB 400 4278904 YP_750677.1 CDS torD NC_008345.1 2363578 2364234 R TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD complement(2363578..2364234) Shewanella frigidimarina NCIMB 400 4278905 YP_750678.1 CDS Sfri_1994 NC_008345.1 2364320 2366812 R TIGRFAM: Twin-arginine translocation pathway signal; trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: son:SO1232 trimethylamine-N-oxide reductase; trimethylamine-N-oxide reductase TorA complement(2364320..2366812) Shewanella frigidimarina NCIMB 400 4278906 YP_750679.1 CDS Sfri_1995 NC_008345.1 2366825 2368003 R TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO1233 tetraheme cytochrome c; trimethylamine-N-oxide reductase c-type cytochrome TorC complement(2366825..2368003) Shewanella frigidimarina NCIMB 400 4278907 YP_750680.1 CDS Sfri_1996 NC_008345.1 2368046 2368216 R PFAM: periplasmic nitrate reductase NapE; KEGG: son:SO1234 warning TorE protein; periplasmic nitrate reductase NapE complement(2368046..2368216) Shewanella frigidimarina NCIMB 400 4278908 YP_750681.1 CDS Sfri_1997 NC_008345.1 2368615 2369208 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: son:SO4157 DNA-binding response regulator; two component transcriptional regulator, LuxR family protein complement(2368615..2369208) Shewanella frigidimarina NCIMB 400 4278909 YP_750682.1 CDS Sfri_1998 NC_008345.1 2369410 2371263 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4155 sensor histidine kinase; histidine kinase 2369410..2371263 Shewanella frigidimarina NCIMB 400 4278910 YP_750683.1 CDS Sfri_1999 NC_008345.1 2371517 2373799 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4062 polysulfide reductase, subunit A; twin-arginine translocation pathway signal 2371517..2373799 Shewanella frigidimarina NCIMB 400 4278911 YP_750684.1 CDS Sfri_2000 NC_008345.1 2373828 2374400 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4061 polysulfide reductase, subunit B; 4Fe-4S ferredoxin 2373828..2374400 Shewanella frigidimarina NCIMB 400 4278912 YP_750685.1 CDS Sfri_2001 NC_008345.1 2374397 2375338 D PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4060 polysulfide reductase, subunit C; polysulfide reductase NrfD 2374397..2375338 Shewanella frigidimarina NCIMB 400 4278913 YP_750686.1 CDS Sfri_2002 NC_008345.1 2376415 2376675 D hypothetical protein 2376415..2376675 Shewanella frigidimarina NCIMB 400 4278914 YP_750687.1 CDS Sfri_2003 NC_008345.1 2377096 2377509 D PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pha:PSHAa0258 regulator of nucleoside diphosphate kinase; GreA/GreB family elongation factor 2377096..2377509 Shewanella frigidimarina NCIMB 400 4278915 YP_750688.1 CDS Sfri_2004 NC_008345.1 2378528 2378797 D KEGG: vfi:VF1777 hypothetical protein; hypothetical protein 2378528..2378797 Shewanella frigidimarina NCIMB 400 4278916 YP_750689.1 CDS Sfri_2005 NC_008345.1 2379032 2379571 D hypothetical protein 2379032..2379571 Shewanella frigidimarina NCIMB 400 4278917 YP_750690.1 CDS Sfri_2006 NC_008345.1 2379907 2380155 D PFAM: protein of unknown function DUF450; KEGG: ppr:PBPRA1804 putative type I restriction enzyme R protein; hypothetical protein 2379907..2380155 Shewanella frigidimarina NCIMB 400 4278918 YP_750691.1 CDS Sfri_2007 NC_008345.1 2380574 2381881 R PFAM: phage integrase family protein; KEGG: son:SO2370 site-specific recombinase, phage integrase family; phage integrase family protein complement(2380574..2381881) Shewanella frigidimarina NCIMB 400 4278919 YP_750692.1 CDS Sfri_2008 NC_008345.1 2381961 2382248 R hypothetical protein complement(2381961..2382248) Shewanella frigidimarina NCIMB 400 4278920 YP_750693.1 CDS Sfri_2009 NC_008345.1 2382688 2383140 R KEGG: son:SO2365 hypothetical protein; hypothetical protein complement(2382688..2383140) Shewanella frigidimarina NCIMB 400 4278921 YP_750694.1 CDS Sfri_2010 NC_008345.1 2383411 2384838 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2383411..2384838 Shewanella frigidimarina NCIMB 400 4278922 YP_750695.1 CDS Sfri_2011 NC_008345.1 2384851 2385477 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2384851..2385477 Shewanella frigidimarina NCIMB 400 4278923 YP_750696.1 CDS Sfri_2012 NC_008345.1 2385487 2385663 D PFAM: Cbb3-type cytochrome oxidase component; KEGG: son:SO2362 cytochrome c oxidase, cbb3-type, CcoQ subunit; cbb3-type cytochrome oxidase subunit 2385487..2385663 Shewanella frigidimarina NCIMB 400 4278924 YP_750697.1 CDS Sfri_2013 NC_008345.1 2385663 2386637 D TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: son:SO2361 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 2385663..2386637 Shewanella frigidimarina NCIMB 400 4278925 YP_750698.1 CDS Sfri_2014 NC_008345.1 2386754 2387233 D KEGG: son:SO2360 hypothetical protein; hypothetical protein 2386754..2387233 Shewanella frigidimarina NCIMB 400 4278926 YP_750699.1 CDS Sfri_2015 NC_008345.1 2387291 2389684 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: son:SO2359 cation transport ATPase, E1-E2 family; heavy metal translocating P-type ATPase 2387291..2389684 Shewanella frigidimarina NCIMB 400 4278927 YP_750700.1 CDS Sfri_2016 NC_008345.1 2389681 2389995 D TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: son:SO2358 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein 2389681..2389995 Shewanella frigidimarina NCIMB 400 4278928 YP_750701.1 CDS Sfri_2017 NC_008345.1 2390001 2390690 D KEGG: son:SO2357 hypothetical protein; hypothetical protein 2390001..2390690 Shewanella frigidimarina NCIMB 400 4278929 YP_750702.1 CDS Sfri_2018 NC_008345.1 2391013 2391771 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2391013..2391771 Shewanella frigidimarina NCIMB 400 4278930 YP_750703.1 CDS Sfri_2019 NC_008345.1 2391870 2392799 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2391870..2392799 Shewanella frigidimarina NCIMB 400 4278931 YP_750704.1 CDS Sfri_2020 NC_008345.1 2392890 2393828 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2392890..2393828 Shewanella frigidimarina NCIMB 400 4278932 YP_750705.1 CDS Sfri_2021 NC_008345.1 2393909 2394562 R KEGG: son:SO2353 hypothetical protein; hypothetical protein complement(2393909..2394562) Shewanella frigidimarina NCIMB 400 4278933 YP_750706.1 CDS Sfri_2022 NC_008345.1 2394555 2395373 R PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; KEGG: son:SO2352 bax protein, putative; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase complement(2394555..2395373) Shewanella frigidimarina NCIMB 400 4278934 YP_750707.1 CDS Sfri_2023 NC_008345.1 2395643 2396599 D TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: son:SO2351 hypothetical protein; hypothetical protein 2395643..2396599 Shewanella frigidimarina NCIMB 400 4278935 YP_750708.1 CDS Sfri_2024 NC_008345.1 2396799 2397992 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2396799..2397992) Shewanella frigidimarina NCIMB 400 4278936 YP_750709.1 CDS rplT NC_008345.1 2398541 2398900 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2398541..2398900) Shewanella frigidimarina NCIMB 400 4278937 YP_750710.1 CDS rpmI NC_008345.1 2398917 2399111 R PFAM: ribosomal protein L35; KEGG: son:SO2301 50S ribosomal protein L35; 50S ribosomal protein L35 complement(2398917..2399111) Shewanella frigidimarina NCIMB 400 4278938 YP_750711.1 CDS Sfri_2027 NC_008345.1 2399195 2399530 R PFAM: initiation factor 3; KEGG: son:SO2300 translation initiation factor IF-3; initiation factor 3 complement(2399195..2399530) Shewanella frigidimarina NCIMB 400 4278939 YP_750712.1 CDS Sfri_2028 NC_008345.1 2399741 2401669 R catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase complement(2399741..2401669) Shewanella frigidimarina NCIMB 400 4278940 YP_750713.1 CDS Sfri_2029 NC_008345.1 2402163 2402363 D KEGG: son:SO2297 hypothetical protein; hypothetical protein 2402163..2402363 Shewanella frigidimarina NCIMB 400 4278941 YP_750714.1 CDS Sfri_2030 NC_008345.1 2402427 2403041 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(2402427..2403041) Shewanella frigidimarina NCIMB 400 4278942 YP_750715.1 CDS Sfri_2031 NC_008345.1 2403071 2404432 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO2295 MATE efflux family protein; MATE efflux family protein 2403071..2404432 Shewanella frigidimarina NCIMB 400 4278943 YP_750716.1 CDS Sfri_2032 NC_008345.1 2405511 2406893 R PFAM: aldehyde dehydrogenase; KEGG: bja:bll3998 probable succinate-semialdehyde dehydrogenase [NADP+]; aldehyde dehydrogenase complement(2405511..2406893) Shewanella frigidimarina NCIMB 400 4278944 YP_750717.1 CDS Sfri_2033 NC_008345.1 2407150 2408307 R PFAM: iron-containing alcohol dehydrogenase; KEGG: alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase complement(2407150..2408307) Shewanella frigidimarina NCIMB 400 4278945 YP_750718.1 CDS Sfri_2034 NC_008345.1 2409529 2409741 D KEGG: pha:PSHAa1766 hypothetical protein; hypothetical protein 2409529..2409741 Shewanella frigidimarina NCIMB 400 4278946 YP_750719.1 CDS Sfri_2035 NC_008345.1 2409874 2410344 R KEGG: tcx:Tcr_1936 hypothetical protein; hypothetical protein complement(2409874..2410344) Shewanella frigidimarina NCIMB 400 4278947 YP_750720.1 CDS Sfri_2036 NC_008345.1 2411138 2411425 R KEGG: tcx:Tcr_1933 uncharacterized conserved coiled coil protein; hypothetical protein complement(2411138..2411425) Shewanella frigidimarina NCIMB 400 4278948 YP_750721.1 CDS Sfri_2037 NC_008345.1 2411980 2412588 D KEGG: pha:PSHAb0310 hypothetical protein; hypothetical protein 2411980..2412588 Shewanella frigidimarina NCIMB 400 4278949 YP_750722.1 CDS Sfri_2038 NC_008345.1 2412716 2414455 R PFAM: protein of unknown function DUF885; KEGG: xcv:XCV4134 putative secreted protein; hypothetical protein complement(2412716..2414455) Shewanella frigidimarina NCIMB 400 4278950 YP_750723.1 CDS Sfri_2039 NC_008345.1 2414717 2416513 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: cps:CPS_1177 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein complement(2414717..2416513) Shewanella frigidimarina NCIMB 400 4278951 YP_750724.1 CDS Sfri_2040 NC_008345.1 2417088 2419535 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_09015 TonB-dependent receptor; TonB-dependent receptor 2417088..2419535 Shewanella frigidimarina NCIMB 400 4278952 YP_750725.1 CDS Sfri_2041 NC_008345.1 2419677 2420339 D PFAM: nitroreductase; KEGG: tcx:Tcr_0408 nitroreductase; nitroreductase 2419677..2420339 Shewanella frigidimarina NCIMB 400 4278953 YP_750726.1 CDS Sfri_2042 NC_008345.1 2420353 2421342 D PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc1770 probable hydrolase protein; alpha/beta hydrolase 2420353..2421342 Shewanella frigidimarina NCIMB 400 4278954 YP_750727.1 CDS Sfri_2043 NC_008345.1 2421467 2422657 D KEGG: bja:bll1370 hypothetical protein; hypothetical protein 2421467..2422657 Shewanella frigidimarina NCIMB 400 4278955 YP_750728.1 CDS Sfri_2044 NC_008345.1 2422744 2423655 D PFAM: Bile acid:sodium symporter; KEGG: syn:sll1428 P3 protein; bile acid:sodium symporter 2422744..2423655 Shewanella frigidimarina NCIMB 400 4278956 YP_750729.1 CDS Sfri_2045 NC_008345.1 2423833 2424525 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2423833..2424525 Shewanella frigidimarina NCIMB 400 4278957 YP_750730.1 CDS Sfri_2046 NC_008345.1 2424536 2425390 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccr:CC0353 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 2424536..2425390 Shewanella frigidimarina NCIMB 400 4278958 YP_750731.1 CDS Sfri_2047 NC_008345.1 2425481 2426266 D PFAM: alpha/beta hydrolase fold; KEGG: cps:CPS_4105 hypothetical protein; alpha/beta hydrolase 2425481..2426266 Shewanella frigidimarina NCIMB 400 4278959 YP_750732.1 CDS Sfri_2048 NC_008345.1 2426340 2427443 D KEGG: gsu:GSU0193 L-sorbosone dehydrogenase, putative; L-sorbosone dehydrogenase, putative 2426340..2427443 Shewanella frigidimarina NCIMB 400 4278960 YP_750733.1 CDS Sfri_2049 NC_008345.1 2428087 2429163 R KEGG: bfr:BF0537 hypothetical protein; hypothetical protein complement(2428087..2429163) Shewanella frigidimarina NCIMB 400 4278961 YP_750734.1 CDS Sfri_2050 NC_008345.1 2429661 2429972 D PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 2429661..2429972 Shewanella frigidimarina NCIMB 400 4278962 YP_750735.1 CDS Sfri_2051 NC_008345.1 2430026 2430838 D PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 2430026..2430838 Shewanella frigidimarina NCIMB 400 4278963 YP_750736.1 CDS Sfri_2052 NC_008345.1 2431721 2432173 D KEGG: vfi:VFA1144 hypothetical cytosolic protein; hypothetical protein 2431721..2432173 Shewanella frigidimarina NCIMB 400 4278964 YP_750737.1 CDS Sfri_2053 NC_008345.1 2433066 2434625 D PFAM: Integrase, catalytic region; KEGG: pha:PSHAa0416 transposase; integrase catalytic subunit 2433066..2434625 Shewanella frigidimarina NCIMB 400 4278965 YP_750738.1 CDS Sfri_2054 NC_008345.1 2434654 2435412 D PFAM: IstB domain protein ATP-binding protein; KEGG: pha:PSHAa0414 transposase; IstB ATP binding domain-containing protein 2434654..2435412 Shewanella frigidimarina NCIMB 400 4278966 YP_750739.1 CDS Sfri_2055 NC_008345.1 2435491 2436285 R KEGG: bpm:BURPS1710b_0124 GDSL-like lipase/acylhydrolase domain protein; GDSL-like lipase/acylhydrolase domain-containing protein complement(2435491..2436285) Shewanella frigidimarina NCIMB 400 4278967 YP_750740.1 CDS Sfri_2056 NC_008345.1 2436373 2437281 R PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC1175 haloalkane dehalogenase, putative; haloalkane dehalogenase complement(2436373..2437281) Shewanella frigidimarina NCIMB 400 4278968 YP_750741.1 CDS Sfri_2057 NC_008345.1 2437428 2438600 R KEGG: pha:PSHAa0678 hypothetical protein; hypothetical protein complement(2437428..2438600) Shewanella frigidimarina NCIMB 400 4278969 YP_750742.1 CDS Sfri_2058 NC_008345.1 2438607 2439440 R PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pha:PSHAa0679 ATPase; ATPase complement(2438607..2439440) Shewanella frigidimarina NCIMB 400 4278970 YP_750743.1 CDS Sfri_2059 NC_008345.1 2439514 2441628 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sil:SPO1845 oxidoreductase, molybdopterin-binding; molybdopterin oxidoreductase complement(2439514..2441628) Shewanella frigidimarina NCIMB 400 4278971 YP_750744.1 CDS Sfri_2060 NC_008345.1 2441811 2442809 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: ilo:IL0315 predicted NADP-dependent oxidoreductases; alcohol dehydrogenase complement(2441811..2442809) Shewanella frigidimarina NCIMB 400 4278972 YP_750745.1 CDS Sfri_2061 NC_008345.1 2442895 2443959 R KEGG: pha:PSHAb0546 hypothetical protein; hypothetical protein complement(2442895..2443959) Shewanella frigidimarina NCIMB 400 4278973 YP_750746.1 CDS Sfri_2062 NC_008345.1 2444014 2445684 R PFAM: AMP-dependent synthetase and ligase; KEGG: cps:CPS_1189 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase complement(2444014..2445684) Shewanella frigidimarina NCIMB 400 4278974 YP_750747.1 CDS Sfri_2063 NC_008345.1 2445791 2446972 R KEGG: sma:SAV1384 putative acyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(2445791..2446972) Shewanella frigidimarina NCIMB 400 4278975 YP_750748.1 CDS Sfri_2064 NC_008345.1 2447103 2448023 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccr:CC2093 3-oxoacyl-(acyl-carrier-protein) reductase, putative; short-chain dehydrogenase/reductase SDR complement(2447103..2448023) Shewanella frigidimarina NCIMB 400 4278976 YP_750749.1 CDS Sfri_2065 NC_008345.1 2448081 2448542 R PFAM: MaoC domain protein dehydratase; KEGG: eli:ELI_12095 MaoC domain protein; dehydratase complement(2448081..2448542) Shewanella frigidimarina NCIMB 400 4278977 YP_750750.1 CDS Sfri_2066 NC_008345.1 2448929 2450734 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: psp:PSPPH_0495 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein complement(2448929..2450734) Shewanella frigidimarina NCIMB 400 4278978 YP_750751.1 CDS Sfri_2067 NC_008345.1 2450860 2451621 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bur:Bcep18194_B3036 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2450860..2451621) Shewanella frigidimarina NCIMB 400 4278979 YP_750752.1 CDS Sfri_2068 NC_008345.1 2451776 2452810 R PFAM: aminoglycoside phosphotransferase; KEGG: bur:Bcep18194_B3038 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(2451776..2452810) Shewanella frigidimarina NCIMB 400 4278980 YP_750753.1 CDS Sfri_2069 NC_008345.1 2453019 2454230 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: ppu:PP2437 acyl-CoA dehydrogenase, putative; acyl-CoA dehydrogenase domain-containing protein complement(2453019..2454230) Shewanella frigidimarina NCIMB 400 4278981 YP_750754.1 CDS Sfri_2070 NC_008345.1 2454321 2455445 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: psb:Psyr_1011 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(2454321..2455445) Shewanella frigidimarina NCIMB 400 4278982 YP_750755.1 CDS Sfri_2071 NC_008345.1 2455528 2456298 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl_3419 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(2455528..2456298) Shewanella frigidimarina NCIMB 400 4278983 YP_750756.1 CDS Sfri_2072 NC_008345.1 2456354 2457088 R PFAM: Phosphoglycerate mutase; KEGG: aci:ACIAD1884 putative phosphoglycerate mutase related protein; phosphoglycerate mutase complement(2456354..2457088) Shewanella frigidimarina NCIMB 400 4278984 YP_750757.1 CDS Sfri_2073 NC_008345.1 2457466 2458377 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rso:RSc2018 probable transcription regulator protein; transcriptional regulator, LysR family protein 2457466..2458377 Shewanella frigidimarina NCIMB 400 4278985 YP_750758.1 CDS Sfri_2074 NC_008345.1 2458647 2461385 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; extracellular solute-binding protein, family 3; PAS fold-3 domain protein; PAS fold-4 domain protein; KEGG: gme:Gmet_3085 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) complement(2458647..2461385) Shewanella frigidimarina NCIMB 400 4278986 YP_750759.1 CDS Sfri_2075 NC_008345.1 2461925 2462701 R KEGG: son:SO4042 hydratase/decarboxylase family protein; hydratase/decarboxylase family protein complement(2461925..2462701) Shewanella frigidimarina NCIMB 400 4278987 YP_750760.1 CDS Sfri_2076 NC_008345.1 2462913 2464055 R KEGG: ppr:PBPRA1435 hypothetical protein; hypothetical protein complement(2462913..2464055) Shewanella frigidimarina NCIMB 400 4278988 YP_750761.1 CDS Sfri_2077 NC_008345.1 2464299 2465960 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2525 ABC transporter, ATP-binding protein; ABC transporter 2464299..2465960 Shewanella frigidimarina NCIMB 400 4278989 YP_750762.1 CDS Sfri_2078 NC_008345.1 2466343 2468583 D PFAM: peptidase U32; KEGG: ppr:PBPRA1758 putative collagenase family protease; peptidase U32 2466343..2468583 Shewanella frigidimarina NCIMB 400 4278990 YP_750763.1 CDS Sfri_2079 NC_008345.1 2469255 2472239 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa2457 TonB-dependent receptor; TonB-dependent receptor 2469255..2472239 Shewanella frigidimarina NCIMB 400 4278991 YP_750764.1 CDS Sfri_2080 NC_008345.1 2472836 2473714 D PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pha:PSHAa1750 tartronate semialdehyde reductase (TSAR); 6-phosphogluconate dehydrogenase 2472836..2473714 Shewanella frigidimarina NCIMB 400 4278992 YP_750765.1 CDS Sfri_2081 NC_008345.1 2474007 2474360 D PFAM: protein of unknown function UPF0153; KEGG: cps:CPS_2168 conserved hypothetical protein; hypothetical protein 2474007..2474360 Shewanella frigidimarina NCIMB 400 4278993 YP_750766.1 CDS Sfri_2082 NC_008345.1 2474609 2475199 D hypothetical protein 2474609..2475199 Shewanella frigidimarina NCIMB 400 4278994 YP_750767.1 CDS Sfri_2083 NC_008345.1 2475466 2477313 D KEGG: ava:Ava_B0313 hypothetical protein; hypothetical protein 2475466..2477313 Shewanella frigidimarina NCIMB 400 4278995 YP_750768.1 CDS Sfri_2084 NC_008345.1 2477368 2477838 R KEGG: ana:alr4914 unknown protein; hypothetical protein complement(2477368..2477838) Shewanella frigidimarina NCIMB 400 4278996 YP_750769.1 CDS Sfri_2085 NC_008345.1 2477813 2479873 R KEGG: ana:alr4911 unknown protein; DNA repair ATPase-like protein complement(2477813..2479873) Shewanella frigidimarina NCIMB 400 4278997 YP_750770.1 CDS Sfri_2086 NC_008345.1 2479860 2480084 R hypothetical protein complement(2479860..2480084) Shewanella frigidimarina NCIMB 400 4278998 YP_750771.1 CDS Sfri_2087 NC_008345.1 2480084 2482231 R PFAM: helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD/DEAH box helicase domain protein; KEGG: sma:SAV2928 DNA repair helicase; type III restriction enzyme, res subunit complement(2480084..2482231) Shewanella frigidimarina NCIMB 400 4278999 YP_750772.1 CDS Sfri_2088 NC_008345.1 2482240 2484582 R PFAM: protein of unknown function DUF262; KEGG: hpj:jhp0462 hypothetical protein; hypothetical protein complement(2482240..2484582) Shewanella frigidimarina NCIMB 400 4279000 YP_750773.1 CDS Sfri_2089 NC_008345.1 2484967 2485923 D KEGG: eca:ECA2874 hypothetical protein; hypothetical protein 2484967..2485923 Shewanella frigidimarina NCIMB 400 4279001 YP_750774.1 CDS Sfri_2090 NC_008345.1 2485904 2489320 D KEGG: eca:ECA2875 putative ATP-binding protein; hypothetical protein 2485904..2489320 Shewanella frigidimarina NCIMB 400 4279002 YP_750775.1 CDS Sfri_2091 NC_008345.1 2489313 2490209 D PFAM: phosphoadenosine phosphosulfate reductase; KEGG: eca:ECA2876 putative phage-related protein; phosphoadenosine phosphosulfate reductase 2489313..2490209 Shewanella frigidimarina NCIMB 400 4279003 YP_750776.1 CDS Sfri_2092 NC_008345.1 2490221 2491282 R PFAM: aminotransferase, class V; KEGG: ecu:ECU11_1770 cysteine desulfurase; class V aminotransferase complement(2490221..2491282) Shewanella frigidimarina NCIMB 400 4279004 YP_750777.1 CDS Sfri_2093 NC_008345.1 2491927 2493222 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: pha:PSHAb0513 putative secreted hydrolase; amidohydrolase 2491927..2493222 Shewanella frigidimarina NCIMB 400 4279005 YP_750778.1 CDS Sfri_2094 NC_008345.1 2494265 2495167 R KEGG: son:SO2518 hypothetical protein; hypothetical protein complement(2494265..2495167) Shewanella frigidimarina NCIMB 400 4279006 YP_750779.1 CDS Sfri_2095 NC_008345.1 2495779 2496102 D PFAM: protein of unknown function DUF74; KEGG: cps:CPS_2458 hypothetical protein; hypothetical protein 2495779..2496102 Shewanella frigidimarina NCIMB 400 4279007 YP_750780.1 CDS Sfri_2096 NC_008345.1 2496346 2496798 D PFAM: protein of unknown function DUF302; KEGG: cps:CPS_2735 hypothetical protein; hypothetical protein 2496346..2496798 Shewanella frigidimarina NCIMB 400 4279008 YP_750781.1 CDS Sfri_2097 NC_008345.1 2497147 2497854 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sde:Sde_0124 short chain dehydrogenase family protein; short-chain dehydrogenase/reductase SDR 2497147..2497854 Shewanella frigidimarina NCIMB 400 4279009 YP_750782.1 CDS Sfri_2098 NC_008345.1 2498133 2498519 D KEGG: vpa:VPA0774 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2498133..2498519 Shewanella frigidimarina NCIMB 400 4279010 YP_750783.1 CDS Sfri_2099 NC_008345.1 2498533 2499633 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: vpa:VPA0773 N-ethylmaleimide reductase; NADH:flavin oxidoreductase 2498533..2499633 Shewanella frigidimarina NCIMB 400 4279011 YP_750784.1 CDS Sfri_2100 NC_008345.1 2500027 2500863 R PFAM: MscS Mechanosensitive ion channel; KEGG: vpa:VPA1439 hypothetical protein; MscS mechanosensitive ion channel complement(2500027..2500863) Shewanella frigidimarina NCIMB 400 4279012 YP_750785.1 CDS Sfri_2101 NC_008345.1 2501134 2501967 R hypothetical protein complement(2501134..2501967) Shewanella frigidimarina NCIMB 400 4279013 YP_750786.1 CDS Sfri_2102 NC_008345.1 2502260 2502913 R KEGG: vfi:VF1324 hypothetical protein; hypothetical protein complement(2502260..2502913) Shewanella frigidimarina NCIMB 400 4279014 YP_750787.1 CDS Sfri_2103 NC_008345.1 2503767 2504903 D KEGG: son:SO2099 hydrogenase small chain; TIGRFAM: hydrogenase (NiFe) small subunit HydA; Twin-arginine translocation pathway signal; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; hydrogenase (NiFe) small subunit HydA 2503767..2504903 Shewanella frigidimarina NCIMB 400 4279015 YP_750788.1 CDS Sfri_2104 NC_008345.1 2504906 2506609 D PFAM: nickel-dependent hydrogenase, large subunit; KEGG: son:SO2098 hydrogenase large chain; nickel-dependent hydrogenase, large subunit 2504906..2506609 Shewanella frigidimarina NCIMB 400 4279016 YP_750789.1 CDS Sfri_2105 NC_008345.1 2506641 2507309 D TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: son:SO2097 quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 2506641..2507309 Shewanella frigidimarina NCIMB 400 4279017 YP_750790.1 CDS Sfri_2106 NC_008345.1 2507325 2507879 D TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein; KEGG: son:SO2096 hydrogenase expression/formation protein; hydrogenase maturation protease 2507325..2507879 Shewanella frigidimarina NCIMB 400 4279018 YP_750791.1 CDS Sfri_2107 NC_008345.1 2507866 2509869 D KEGG: son:SO2095 hypothetical protein; hypothetical protein 2507866..2509869 Shewanella frigidimarina NCIMB 400 4279019 YP_750792.1 CDS Sfri_2108 NC_008345.1 2509925 2512336 D TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain protein; zinc finger, HypF domain protein; KEGG: son:SO2094 hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF 2509925..2512336 Shewanella frigidimarina NCIMB 400 4279020 YP_750793.1 CDS Sfri_2109 NC_008345.1 2512633 2513352 D TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: son:SO2093 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 2512633..2513352 Shewanella frigidimarina NCIMB 400 4279021 YP_750794.1 CDS Sfri_2110 NC_008345.1 2513355 2513597 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: son:SO2092 hydrogenase assembly chaperone hypC/hupF; hydrogenase assembly chaperone HypC/HupF 2513355..2513597 Shewanella frigidimarina NCIMB 400 4279022 YP_750795.1 CDS Sfri_2111 NC_008345.1 2513594 2514721 D TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: son:SO2091 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD 2513594..2514721 Shewanella frigidimarina NCIMB 400 4279023 YP_750796.1 CDS Sfri_2112 NC_008345.1 2514711 2515718 D TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: son:SO2090 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2514711..2515718 Shewanella frigidimarina NCIMB 400 4279024 YP_750797.1 CDS Sfri_2113 NC_008345.1 2515718 2516062 D PFAM: hydrogenase expression/synthesis, HypA; KEGG: son:SO2089 hydrogenase expression/formation protein HypA; hydrogenase expression/synthesis, HypA 2515718..2516062 Shewanella frigidimarina NCIMB 400 4279025 YP_750798.1 CDS Sfri_2114 NC_008345.1 2516142 2516306 D hypothetical protein 2516142..2516306 Shewanella frigidimarina NCIMB 400 4279026 YP_750799.1 CDS Sfri_2115 NC_008345.1 2516490 2518247 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO2395 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein complement(2516490..2518247) Shewanella frigidimarina NCIMB 400 4279027 YP_750800.1 CDS Sfri_2116 NC_008345.1 2518593 2519528 D KEGG: son:SO2517 hypothetical protein; hypothetical protein 2518593..2519528 Shewanella frigidimarina NCIMB 400 4279028 YP_750801.1 CDS Sfri_2117 NC_008345.1 2519607 2520158 R KEGG: son:SO2396 hypothetical protein; hypothetical protein complement(2519607..2520158) Shewanella frigidimarina NCIMB 400 4279029 YP_750802.1 CDS Sfri_2118 NC_008345.1 2520186 2521028 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO2397 short chain dehydrogenase; short chain dehydrogenase complement(2520186..2521028) Shewanella frigidimarina NCIMB 400 4279030 YP_750803.1 CDS Sfri_2119 NC_008345.1 2521139 2521837 R type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(2521139..2521837) Shewanella frigidimarina NCIMB 400 4279031 YP_750804.1 CDS Sfri_2120 NC_008345.1 2521906 2523066 R KEGG: son:SO2399 hypothetical protein; tetratricopeptide repeat protein complement(2521906..2523066) Shewanella frigidimarina NCIMB 400 4279032 YP_750805.1 CDS Sfri_2121 NC_008345.1 2523068 2523376 R PFAM: protein of unknown function DUF1049; KEGG: son:SO2400 hypothetical protein; hypothetical protein complement(2523068..2523376) Shewanella frigidimarina NCIMB 400 4279033 YP_750806.1 CDS ihfB NC_008345.1 2523487 2523774 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta complement(2523487..2523774) Shewanella frigidimarina NCIMB 400 4279034 YP_750807.1 CDS rpsA NC_008345.1 2523852 2525519 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(2523852..2525519) Shewanella frigidimarina NCIMB 400 4279035 YP_750808.1 CDS cmk NC_008345.1 2525634 2526323 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(2525634..2526323) Shewanella frigidimarina NCIMB 400 4279036 YP_750809.1 CDS Sfri_2125 NC_008345.1 2526504 2527784 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2526504..2527784) Shewanella frigidimarina NCIMB 400 4279037 YP_750810.1 CDS Sfri_2126 NC_008345.1 2528223 2529413 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2528223..2529413 Shewanella frigidimarina NCIMB 400 4279038 YP_750811.1 CDS Sfri_2127 NC_008345.1 2529919 2531280 D KEGG: son:SO0919 serine transporter, putative; serine transporter 2529919..2531280 Shewanella frigidimarina NCIMB 400 4279039 YP_750812.1 CDS Sfri_2128 NC_008345.1 2531494 2532573 D KEGG: son:SO2905 O-methyltransferase, putative; O-methyltransferase 2531494..2532573 Shewanella frigidimarina NCIMB 400 4279040 YP_750813.1 CDS Sfri_2129 NC_008345.1 2532733 2533824 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(2532733..2533824) Shewanella frigidimarina NCIMB 400 4279041 YP_750814.1 CDS Sfri_2130 NC_008345.1 2534002 2536731 R TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: son:SO2411 DNA gyrase subunit A; DNA gyrase subunit A complement(2534002..2536731) Shewanella frigidimarina NCIMB 400 4279042 YP_750815.1 CDS Sfri_2131 NC_008345.1 2537119 2537841 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2537119..2537841 Shewanella frigidimarina NCIMB 400 4279043 YP_750816.1 CDS Sfri_2132 NC_008345.1 2537965 2538627 D KEGG: son:SO2414 phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 2537965..2538627 Shewanella frigidimarina NCIMB 400 4279044 YP_750817.1 CDS Sfri_2133 NC_008345.1 2539219 2541507 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2539219..2541507 Shewanella frigidimarina NCIMB 400 4279045 YP_750818.1 CDS nrdB NC_008345.1 2541580 2542710 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2541580..2542710 Shewanella frigidimarina NCIMB 400 4279046 YP_750819.1 CDS Sfri_2135 NC_008345.1 2542700 2543101 D PFAM: ferredoxin; KEGG: son:SO2417 iron-sulfur cluster-binding protein; ferredoxin 2542700..2543101 Shewanella frigidimarina NCIMB 400 4279047 YP_750820.1 CDS Sfri_2136 NC_008345.1 2543125 2543421 R KEGG: pha:PSHAa0636 hypothetical protein; hypothetical protein complement(2543125..2543421) Shewanella frigidimarina NCIMB 400 4279048 YP_750821.1 CDS Sfri_2137 NC_008345.1 2543872 2544705 R KEGG: cps:CPS_3364 hypothetical protein; hypothetical protein complement(2543872..2544705) Shewanella frigidimarina NCIMB 400 4279049 YP_750822.1 CDS Sfri_2138 NC_008345.1 2544692 2545840 R KEGG: vpa:VP1356 hypothetical protein; hypothetical protein complement(2544692..2545840) Shewanella frigidimarina NCIMB 400 4279050 YP_750823.1 CDS Sfri_2139 NC_008345.1 2546472 2547335 D PFAM: protein of unknown function RIO1; KEGG: son:SO3973 RIO1/ZK632.3/MJ0444 family, putative; hypothetical protein 2546472..2547335 Shewanella frigidimarina NCIMB 400 4279051 YP_750824.1 CDS Sfri_2140 NC_008345.1 2547778 2548104 D PFAM: Calcium-binding EF-hand-containing protein; KEGG: tdn:Tmden_1322 hypothetical protein; calcium-binding EF-hand-containing protein 2547778..2548104 Shewanella frigidimarina NCIMB 400 4279052 YP_750825.1 CDS Sfri_2141 NC_008345.1 2548293 2548586 R KEGG: hch:HCH_06678 hypothetical protein; hypothetical protein complement(2548293..2548586) Shewanella frigidimarina NCIMB 400 4279053 YP_750826.1 CDS Sfri_2142 NC_008345.1 2548870 2549550 D TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ilo:IL1575 L-2-haloalkanoic acid dehalogenase, HAD superfamily; haloacid dehalogenase 2548870..2549550 Shewanella frigidimarina NCIMB 400 4279054 YP_750827.1 CDS Sfri_2143 NC_008345.1 2549699 2550568 D PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: vpa:VPA1298 putative glutathione S-transferase; glutathione S-transferase domain-containing protein 2549699..2550568 Shewanella frigidimarina NCIMB 400 4279055 YP_750828.1 CDS Sfri_2144 NC_008345.1 2550723 2552738 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO2419 2,4-dienoyl-CoA reductase, putative; NADH:flavin oxidoreductase complement(2550723..2552738) Shewanella frigidimarina NCIMB 400 4279056 YP_750829.1 CDS Sfri_2145 NC_008345.1 2552902 2554746 D TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: son:SO2420 signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 67K type 2552902..2554746 Shewanella frigidimarina NCIMB 400 4279057 YP_750830.1 CDS ansA NC_008345.1 2554878 2555891 D converts asparagine to aspartate and ammonia; asparaginase 2554878..2555891 Shewanella frigidimarina NCIMB 400 4279058 YP_750831.1 CDS Sfri_2147 NC_008345.1 2556026 2556307 R PFAM: protein of unknown function DUF1315; KEGG: son:SO2422 hypothetical protein; hypothetical protein complement(2556026..2556307) Shewanella frigidimarina NCIMB 400 4279059 YP_750832.1 CDS Sfri_2148 NC_008345.1 2556304 2556621 R KEGG: son:SO2423 hypothetical protein; hypothetical protein complement(2556304..2556621) Shewanella frigidimarina NCIMB 400 4279060 YP_750833.1 CDS Sfri_2149 NC_008345.1 2556678 2557802 R PFAM: peptidase M14, carboxypeptidase A; KEGG: son:SO2424 zinc carboxypeptidase domain protein; peptidase M14, carboxypeptidase A complement(2556678..2557802) Shewanella frigidimarina NCIMB 400 4279061 YP_750834.1 CDS Sfri_2150 NC_008345.1 2557909 2558571 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2426 DNA-binding response regulator; two component transcriptional regulator, winged helix family protein complement(2557909..2558571) Shewanella frigidimarina NCIMB 400 4279062 YP_750835.1 CDS Sfri_2151 NC_008345.1 2558730 2560529 R PFAM: protein of unknown function DUF885; KEGG: son:SO2570 lipoprotein, putative; hypothetical protein complement(2558730..2560529) Shewanella frigidimarina NCIMB 400 4279063 YP_750836.1 CDS Sfri_2152 NC_008345.1 2560800 2561729 D cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2560800..2561729 Shewanella frigidimarina NCIMB 400 4279064 YP_750837.1 CDS Sfri_2153 NC_008345.1 2561783 2563102 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: vfi:VF1790 ATP-dependent RNA helicase; DEAD/DEAH box helicase complement(2561783..2563102) Shewanella frigidimarina NCIMB 400 4279065 YP_750838.1 CDS Sfri_2154 NC_008345.1 2563607 2564239 R PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO2137 multiple antibiotic resistance protein; hypothetical protein complement(2563607..2564239) Shewanella frigidimarina NCIMB 400 4279066 YP_750839.1 CDS Sfri_2155 NC_008345.1 2564911 2566971 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: son:SO2223 peptidase, putative; peptidase S9 prolyl oligopeptidase complement(2564911..2566971) Shewanella frigidimarina NCIMB 400 4279067 YP_750840.1 CDS Sfri_2156 NC_008345.1 2567169 2568746 R TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: son:SO2222 fumarate hydratase, class I, anaerobic, putative; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha complement(2567169..2568746) Shewanella frigidimarina NCIMB 400 4279068 YP_750841.1 CDS Sfri_2157 NC_008345.1 2568885 2570306 D TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: son:SO2221 para-aminobenzoate synthase, component I; para-aminobenzoate synthase subunit I 2568885..2570306 Shewanella frigidimarina NCIMB 400 4279069 YP_750842.1 CDS Sfri_2158 NC_008345.1 2570925 2571599 D PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: par:Psyc_0418 probable glutathione S-transferase; glutathione S-transferase domain-containing protein 2570925..2571599 Shewanella frigidimarina NCIMB 400 4279070 YP_750843.1 CDS Sfri_2159 NC_008345.1 2571973 2573694 D PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: son:SO1755 phosphoglucomutase/phosphomannomutase family protein; phosphoglucomutase/phosphomannomutase alpha/beta/subunit 2571973..2573694 Shewanella frigidimarina NCIMB 400 4279071 YP_750844.1 CDS Sfri_2160 NC_008345.1 2573958 2576351 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ilo:IL2271 outer membrane protein; TonB-dependent receptor, plug 2573958..2576351 Shewanella frigidimarina NCIMB 400 4279072 YP_750845.1 CDS Sfri_2161 NC_008345.1 2576530 2578245 R PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: son:SO1499 glycogen synthase; starch synthase complement(2576530..2578245) Shewanella frigidimarina NCIMB 400 4279073 YP_750846.1 CDS glgC NC_008345.1 2578255 2579517 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(2578255..2579517) Shewanella frigidimarina NCIMB 400 4279074 YP_750847.1 CDS Sfri_2163 NC_008345.1 2579613 2582129 R KEGG: son:SO1496 glycogen phosphorylase family protein; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase complement(2579613..2582129) Shewanella frigidimarina NCIMB 400 4279075 YP_750848.1 CDS Sfri_2164 NC_008345.1 2582129 2584255 R KEGG: son:SO1495 glycogen operon protein; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX complement(2582129..2584255) Shewanella frigidimarina NCIMB 400 4279076 YP_750849.1 CDS Sfri_2165 NC_008345.1 2584271 2586505 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(2584271..2586505) Shewanella frigidimarina NCIMB 400 4279077 YP_750850.1 CDS Sfri_2166 NC_008345.1 2586519 2588804 R KEGG: son:SO1493 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; 4-alpha-glucanotransferase complement(2586519..2588804) Shewanella frigidimarina NCIMB 400 4279078 YP_750851.1 CDS Sfri_2167 NC_008345.1 2589601 2590176 D PFAM: NUDIX hydrolase; KEGG: son:SO2220 MutT/nudix family protein; NUDIX hydrolase 2589601..2590176 Shewanella frigidimarina NCIMB 400 4279079 YP_750852.1 CDS Sfri_2168 NC_008345.1 2590290 2590625 R KEGG: son:SO2219 hypothetical protein; hypothetical protein complement(2590290..2590625) Shewanella frigidimarina NCIMB 400 4279080 YP_750853.1 CDS asnC NC_008345.1 2590807 2592207 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2590807..2592207 Shewanella frigidimarina NCIMB 400 4279081 YP_750854.1 CDS Sfri_2170 NC_008345.1 2592524 2594545 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2592524..2594545) Shewanella frigidimarina NCIMB 400 4279082 YP_750855.1 CDS Sfri_2171 NC_008345.1 2596956 2598854 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO2507 GGDEF domain protein; diguanylate cyclase/phosphodiesterase 2596956..2598854 Shewanella frigidimarina NCIMB 400 4279083 YP_750856.1 CDS Sfri_2172 NC_008345.1 2598910 2599572 D TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: son:SO2508 RnfAE/NqrDE family protein; Na(+)-translocating NADH-quinone reductase subunit E 2598910..2599572 Shewanella frigidimarina NCIMB 400 4279084 YP_750857.1 CDS Sfri_2173 NC_008345.1 2599572 2600153 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2599572..2600153 Shewanella frigidimarina NCIMB 400 4279085 YP_750858.1 CDS Sfri_2174 NC_008345.1 2600147 2602687 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2600147..2602687 Shewanella frigidimarina NCIMB 400 4279086 YP_750859.1 CDS rnfD NC_008345.1 2602690 2603742 D RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 2602690..2603742 Shewanella frigidimarina NCIMB 400 4279087 YP_750860.1 CDS Sfri_2176 NC_008345.1 2603745 2604392 D TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: son:SO2512 electron transport complex protein RnfG; electron transport complex, RnfABCDGE type, G subunit 2603745..2604392 Shewanella frigidimarina NCIMB 400 4279088 YP_750861.1 CDS Sfri_2177 NC_008345.1 2604385 2605080 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 2604385..2605080 Shewanella frigidimarina NCIMB 400 4279089 YP_750862.1 CDS Sfri_2178 NC_008345.1 2605139 2605780 D KEGG: son:SO2514 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 2605139..2605780 Shewanella frigidimarina NCIMB 400 4279090 YP_750863.1 CDS Sfri_2179 NC_008345.1 2606159 2606569 D KEGG: son:SO2044 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2606159..2606569 Shewanella frigidimarina NCIMB 400 4279091 YP_750864.1 CDS ruvB NC_008345.1 2606748 2607758 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2606748..2607758) Shewanella frigidimarina NCIMB 400 4279092 YP_750865.1 CDS ruvA NC_008345.1 2607789 2608406 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2607789..2608406) Shewanella frigidimarina NCIMB 400 4279093 YP_750866.1 CDS ruvC NC_008345.1 2608403 2608924 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(2608403..2608924) Shewanella frigidimarina NCIMB 400 4279094 YP_750867.1 CDS Sfri_2183 NC_008345.1 2608932 2609684 R PFAM: protein of unknown function DUF28; KEGG: son:SO2432 conserved hypothetical protein TIGR01033; hypothetical protein complement(2608932..2609684) Shewanella frigidimarina NCIMB 400 4279095 YP_750868.1 CDS aspS NC_008345.1 2609808 2611583 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2609808..2611583) Shewanella frigidimarina NCIMB 400 4279096 YP_750869.1 CDS Sfri_2185 NC_008345.1 2611755 2614580 R KEGG: son:SO2434 extracellular solute-binding proteins, family 3/GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3; diguanylate cyclase complement(2611755..2614580) Shewanella frigidimarina NCIMB 400 4279097 YP_750870.1 CDS Sfri_2186 NC_008345.1 2614968 2615699 D TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2435 methyltransferase, putative; putative methyltransferase 2614968..2615699 Shewanella frigidimarina NCIMB 400 4279098 YP_750871.1 CDS Sfri_2187 NC_008345.1 2615696 2616688 D TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2436 methyltransferase, putative; putative methyltransferase 2615696..2616688 Shewanella frigidimarina NCIMB 400 4279099 YP_750872.1 CDS Sfri_2188 NC_008345.1 2616714 2617484 D PFAM: protein of unknown function DUF785; KEGG: ppr:PBPRA1108 hypothetical protein; hypothetical protein 2616714..2617484 Shewanella frigidimarina NCIMB 400 4279100 YP_750873.1 CDS Sfri_2189 NC_008345.1 2617493 2619001 D KEGG: vvu:VV12151 gonadoliberin III-related protein; gonadoliberin III-like protein 2617493..2619001 Shewanella frigidimarina NCIMB 400 4279101 YP_750874.1 CDS Sfri_2190 NC_008345.1 2619001 2619957 D TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: vpa:VP1040 hypothetical protein; alpha-L-glutamate ligase-like protein 2619001..2619957 Shewanella frigidimarina NCIMB 400 4279102 YP_750875.1 CDS Sfri_2191 NC_008345.1 2619920 2621722 D KEGG: son:SO2437 hypothetical protein; hypothetical protein 2619920..2621722 Shewanella frigidimarina NCIMB 400 4279103 YP_750876.1 CDS Sfri_2192 NC_008345.1 2621700 2622830 D KEGG: vvy:VVA0454 hypothetical protein; hypothetical protein 2621700..2622830 Shewanella frigidimarina NCIMB 400 4279104 YP_750877.1 CDS Sfri_2193 NC_008345.1 2622937 2623836 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2438 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 2622937..2623836 Shewanella frigidimarina NCIMB 400 4279105 YP_750878.1 CDS Sfri_2194 NC_008345.1 2624398 2625681 R KEGG: son:SO2439 SrpA-related protein; hypothetical protein complement(2624398..2625681) Shewanella frigidimarina NCIMB 400 4279106 YP_750879.1 CDS Sfri_2195 NC_008345.1 2625684 2625971 R KEGG: son:SO2439.2 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein complement(2625684..2625971) Shewanella frigidimarina NCIMB 400 4279107 YP_750880.1 CDS thiH NC_008345.1 2626048 2627163 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(2626048..2627163) Shewanella frigidimarina NCIMB 400 4279108 YP_750881.1 CDS thiG NC_008345.1 2627165 2627974 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(2627165..2627974) Shewanella frigidimarina NCIMB 400 4279109 YP_750882.1 CDS Sfri_2198 NC_008345.1 2627977 2628204 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: son:SO2442 thiS protein, putative; thiamine biosynthesis protein ThiS complement(2627977..2628204) Shewanella frigidimarina NCIMB 400 4279110 YP_750883.1 CDS Sfri_2199 NC_008345.1 2628191 2628997 R PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: son:SO2443 thiF protein, putative; UBA/THIF-type NAD/FAD binding protein complement(2628191..2628997) Shewanella frigidimarina NCIMB 400 4279111 YP_750884.1 CDS Sfri_2200 NC_008345.1 2628994 2630673 R KEGG: son:SO2444 phosphomethylpyrimidine kinase / thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; thiamine-phosphate pyrophosphorylase complement(2628994..2630673) Shewanella frigidimarina NCIMB 400 4279112 YP_750885.1 CDS Sfri_2201 NC_008345.1 2630679 2632679 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(2630679..2632679) Shewanella frigidimarina NCIMB 400 4279113 YP_750886.1 CDS Sfri_2202 NC_008345.1 2633243 2635387 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4077 TonB-dependent receptor, putative; TonB-dependent receptor 2633243..2635387 Shewanella frigidimarina NCIMB 400 4279114 YP_750887.1 CDS Sfri_2203 NC_008345.1 2636489 2637826 R KEGG: son:SO2557 hypothetical protein; hypothetical protein complement(2636489..2637826) Shewanella frigidimarina NCIMB 400 4279115 YP_750888.1 CDS Sfri_2204 NC_008345.1 2637837 2638565 R KEGG: son:SO2559 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(2637837..2638565) Shewanella frigidimarina NCIMB 400 4279116 YP_750889.1 CDS rnhA NC_008345.1 2638643 2639116 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2638643..2639116 Shewanella frigidimarina NCIMB 400 4279117 YP_750890.1 CDS Sfri_2206 NC_008345.1 2639330 2640109 R PFAM: Methyltransferase type 11; KEGG: son:SO2562 hypothetical protein; methyltransferase type 11 complement(2639330..2640109) Shewanella frigidimarina NCIMB 400 4279118 YP_750891.1 CDS Sfri_2207 NC_008345.1 2640286 2641065 D PFAM: beta-lactamase domain protein; KEGG: vpa:VP2295 putative hydroxyacylglutathione hydrolase GloB; hydroxyacylglutathione hydrolase 2640286..2641065 Shewanella frigidimarina NCIMB 400 4279119 YP_750892.1 CDS Sfri_2208 NC_008345.1 2641216 2642769 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: son:SO2564 transglycosylase, Slt family; lytic transglycosylase, catalytic 2641216..2642769 Shewanella frigidimarina NCIMB 400 4279120 YP_750893.1 CDS Sfri_2209 NC_008345.1 2643293 2645113 R PFAM: AsmA family protein; KEGG: son:SO2566 AsmA protein; AsmA family protein complement(2643293..2645113) Shewanella frigidimarina NCIMB 400 4279121 YP_750894.1 CDS Sfri_2210 NC_008345.1 2645139 2645633 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(2645139..2645633) Shewanella frigidimarina NCIMB 400 4279122 YP_750895.1 CDS Sfri_2211 NC_008345.1 2645827 2646141 D KEGG: son:SO2569 hypothetical protein; hypothetical protein 2645827..2646141 Shewanella frigidimarina NCIMB 400 4279123 YP_750896.1 CDS Sfri_2212 NC_008345.1 2646401 2648050 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: ilo:IL1296 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2646401..2648050) Shewanella frigidimarina NCIMB 400 4279124 YP_750897.1 CDS Sfri_2213 NC_008345.1 2648356 2649336 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_A1003 regulatory protein, LysR:LysR, substrate-binding; transcriptional regulator, LysR family protein complement(2648356..2649336) Shewanella frigidimarina NCIMB 400 4279125 YP_750898.1 CDS Sfri_2214 NC_008345.1 2649457 2650677 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: ilo:IL1487 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2649457..2650677 Shewanella frigidimarina NCIMB 400 4279126 YP_750899.1 CDS Sfri_2215 NC_008345.1 2650689 2651519 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pst:PSPTO1627 short chain dehydrogenase; short chain dehydrogenase 2650689..2651519 Shewanella frigidimarina NCIMB 400 4279127 YP_750900.1 CDS Sfri_2216 NC_008345.1 2651525 2652592 D PFAM: aminoglycoside phosphotransferase; KEGG: ilo:IL1486 predicted aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2651525..2652592 Shewanella frigidimarina NCIMB 400 4279128 YP_750901.1 CDS Sfri_2217 NC_008345.1 2652595 2653302 D PFAM: Phosphoglycerate mutase; KEGG: pae:PA1831 hypothetical protein; phosphoglycerate mutase 2652595..2653302 Shewanella frigidimarina NCIMB 400 4279129 YP_750902.1 CDS Sfri_2218 NC_008345.1 2653387 2654136 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1485 short chain dehydrogenase family protein; short chain dehydrogenase 2653387..2654136 Shewanella frigidimarina NCIMB 400 4279130 YP_750903.1 CDS Sfri_2219 NC_008345.1 2654221 2654754 R PFAM: protein of unknown function DUF1379; KEGG: son:SO2591 hypothetical protein; hypothetical protein complement(2654221..2654754) Shewanella frigidimarina NCIMB 400 4279131 YP_750904.1 CDS Sfri_2220 NC_008345.1 2654923 2655942 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(2654923..2655942) Shewanella frigidimarina NCIMB 400 4279132 YP_750905.1 CDS Sfri_2221 NC_008345.1 2656004 2660851 R PFAM: NAD-glutamate dehydrogenase; KEGG: son:SO2593 hypothetical protein; NAD-glutamate dehydrogenase complement(2656004..2660851) Shewanella frigidimarina NCIMB 400 4279133 YP_750906.1 CDS Sfri_2222 NC_008345.1 2661180 2663486 R KEGG: son:SO2594 hypothetical protein; hypothetical protein complement(2661180..2663486) Shewanella frigidimarina NCIMB 400 4279134 YP_750907.1 CDS Sfri_2223 NC_008345.1 2663536 2664546 R KEGG: son:SO2595 BNR repeat protein; BNR repeat-containing protein complement(2663536..2664546) Shewanella frigidimarina NCIMB 400 4279135 YP_750908.1 CDS Sfri_2224 NC_008345.1 2664605 2665969 R PFAM: protein of unknown function DUF1329; KEGG: son:SO2596 hypothetical protein; hypothetical protein complement(2664605..2665969) Shewanella frigidimarina NCIMB 400 4279136 YP_750909.1 CDS Sfri_2225 NC_008345.1 2665983 2668031 R PFAM: protein of unknown function DUF1302; KEGG: son:SO2597 hypothetical protein; hypothetical protein complement(2665983..2668031) Shewanella frigidimarina NCIMB 400 4279137 YP_750910.1 CDS Sfri_2226 NC_008345.1 2668347 2668565 R KEGG: son:SO2598 hypothetical protein; hypothetical protein complement(2668347..2668565) Shewanella frigidimarina NCIMB 400 4279138 YP_750911.1 CDS pepN NC_008345.1 2668653 2671214 R TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO2600 aminopeptidase N; aminopeptidase N complement(2668653..2671214) Shewanella frigidimarina NCIMB 400 4279139 YP_750912.1 CDS Sfri_2228 NC_008345.1 2671345 2673396 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease complement(2671345..2673396) Shewanella frigidimarina NCIMB 400 4279140 YP_750913.1 CDS Sfri_2229 NC_008345.1 2673418 2674029 R affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector complement(2673418..2674029) Shewanella frigidimarina NCIMB 400 4279141 YP_750914.1 CDS Sfri_2230 NC_008345.1 2674307 2674771 R KEGG: son:SO2603 GAF domain-containing protein; putative GAF sensor protein complement(2674307..2674771) Shewanella frigidimarina NCIMB 400 4279142 YP_750915.1 CDS Sfri_2231 NC_008345.1 2674815 2675108 R PFAM: YebG family protein; KEGG: son:SO2604 hypothetical protein; hypothetical protein complement(2674815..2675108) Shewanella frigidimarina NCIMB 400 4279143 YP_750916.1 CDS Sfri_2232 NC_008345.1 2675322 2675948 D PFAM: Paraquat-inducible protein A; KEGG: son:SO2604.1 hypothetical protein; paraquat-inducible protein A 2675322..2675948 Shewanella frigidimarina NCIMB 400 4279144 YP_750917.1 CDS Sfri_2233 NC_008345.1 2675941 2676654 D PFAM: Paraquat-inducible protein A; KEGG: ppr:PBPRA1925 hypothetical uncharacterized paraquat-inducible protein A; paraquat-inducible protein A 2675941..2676654 Shewanella frigidimarina NCIMB 400 4279145 YP_750918.1 CDS Sfri_2234 NC_008345.1 2676641 2679286 D PFAM: Mammalian cell entry related domain protein; KEGG: son:SO2606 PqiB family protein; hypothetical protein 2676641..2679286 Shewanella frigidimarina NCIMB 400 4279146 YP_750919.1 CDS Sfri_2235 NC_008345.1 2679381 2680619 R PFAM: nucleoside recognition domain protein; KEGG: son:SO2607 spore maturation protein A-related protein; nucleoside recognition domain-containing protein complement(2679381..2680619) Shewanella frigidimarina NCIMB 400 4279147 YP_750920.1 CDS yebU NC_008345.1 2680732 2682186 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2680732..2682186 Shewanella frigidimarina NCIMB 400 4279148 YP_750921.1 CDS Sfri_2237 NC_008345.1 2683056 2683844 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: son:SO2610 hydrolase, TatD family; TatD family hydrolase complement(2683056..2683844) Shewanella frigidimarina NCIMB 400 4279149 YP_750922.1 CDS Sfri_2238 NC_008345.1 2683900 2684226 R KEGG: son:SO2611 type IV pilus biogenesis protein pilZ; type IV pilus biogenesis protein pilZ complement(2683900..2684226) Shewanella frigidimarina NCIMB 400 4279150 YP_750923.1 CDS Sfri_2239 NC_008345.1 2684278 2685261 R TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: son:SO2612 DNA polymerase III, delta prime subunit; DNA polymerase III, delta prime subunit complement(2684278..2685261) Shewanella frigidimarina NCIMB 400 4279151 YP_750924.1 CDS tmk NC_008345.1 2685290 2685937 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(2685290..2685937) Shewanella frigidimarina NCIMB 400 4279152 YP_750925.1 CDS Sfri_2241 NC_008345.1 2685934 2686947 R PFAM: aminodeoxychorismate lyase; KEGG: son:SO2614 conserved hypothetical protein TIGR00247; aminodeoxychorismate lyase complement(2685934..2686947) Shewanella frigidimarina NCIMB 400 4279153 YP_750926.1 CDS Sfri_2242 NC_008345.1 2686944 2687777 R PFAM: aminotransferase, class IV; KEGG: son:SO2615 4-amino-4-deoxychorismate lyase; aminotransferase, class IV complement(2686944..2687777) Shewanella frigidimarina NCIMB 400 4279154 YP_750927.1 CDS dcd NC_008345.1 2687777 2688361 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(2687777..2688361) Shewanella frigidimarina NCIMB 400 4279155 YP_750928.1 CDS Sfri_2244 NC_008345.1 2688385 2689023 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2688385..2689023) Shewanella frigidimarina NCIMB 400 4279156 YP_750929.1 CDS Sfri_2245 NC_008345.1 2689033 2690148 R KEGG: son:SO2618 ATP-binding protein, Mrp/Nbp35 family; ATP-binding protein, Mrp/Nbp35 family protein complement(2689033..2690148) Shewanella frigidimarina NCIMB 400 4279157 YP_750930.1 CDS metG NC_008345.1 2690305 2692356 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2690305..2692356 Shewanella frigidimarina NCIMB 400 4279158 YP_750931.1 CDS Sfri_2247 NC_008345.1 2692494 2694419 R TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: vvy:VV2526 putative TrkA family protein; potassium efflux system protein complement(2692494..2694419) Shewanella frigidimarina NCIMB 400 4279159 YP_750932.1 CDS Sfri_2248 NC_008345.1 2694515 2695297 R PFAM: protein of unknown function DUF34; KEGG: son:SO2621 conserved hypothetical protein TIGR00486; hypothetical protein complement(2694515..2695297) Shewanella frigidimarina NCIMB 400 4279160 YP_750933.1 CDS Sfri_2249 NC_008345.1 2695694 2696056 D KEGG: ilo:IL1378 hypothetical protein; hypothetical protein 2695694..2696056 Shewanella frigidimarina NCIMB 400 4279161 YP_750934.1 CDS Sfri_2250 NC_008345.1 2696180 2696674 R PFAM: 17 kDa surface antigen; KEGG: son:SO2622 hypothetical protein; 17 kDa surface antigen complement(2696180..2696674) Shewanella frigidimarina NCIMB 400 4279162 YP_750935.1 CDS aat NC_008345.1 2696721 2697428 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2696721..2697428 Shewanella frigidimarina NCIMB 400 4279163 YP_750936.1 CDS Sfri_2252 NC_008345.1 2697418 2698137 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2697418..2698137 Shewanella frigidimarina NCIMB 400 4279164 YP_750937.1 CDS infA NC_008345.1 2698217 2698435 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2698217..2698435 Shewanella frigidimarina NCIMB 400 4279165 YP_750938.1 CDS Sfri_2254 NC_008345.1 2698834 2701092 R KEGG: son:SO2626 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA complement(2698834..2701092) Shewanella frigidimarina NCIMB 400 4279166 YP_750939.1 CDS clpS NC_008345.1 2701136 2701444 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(2701136..2701444) Shewanella frigidimarina NCIMB 400 4279167 YP_750940.1 CDS Sfri_2256 NC_008345.1 2701641 2701847 D KEGG: son:SO2628 stress response protein CspD; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 2701641..2701847 Shewanella frigidimarina NCIMB 400 4279168 YP_750941.1 CDS Sfri_2257 NC_008345.1 2702003 2704228 R KEGG: son:SO2629 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase complement(2702003..2704228) Shewanella frigidimarina NCIMB 400 4279169 YP_750942.1 CDS Sfri_2258 NC_008345.1 2704610 2705317 D KEGG: pha:PSHAa1688 ribosomal large subunit pseudouridine synthase E (pseudouridylate synthase) (uracil hydrolyase); TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; pseudouridine synthase, Rsu 2704610..2705317 Shewanella frigidimarina NCIMB 400 4279170 YP_750943.1 CDS Sfri_2259 NC_008345.1 2705350 2705823 D PFAM: NUDIX hydrolase; KEGG: son:SO2631 MutT/nudix family protein; NUDIX hydrolase 2705350..2705823 Shewanella frigidimarina NCIMB 400 4279171 YP_750944.1 CDS mnmA NC_008345.1 2706082 2707200 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2706082..2707200 Shewanella frigidimarina NCIMB 400 4279172 YP_750945.1 CDS Sfri_2261 NC_008345.1 2707204 2707836 D HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2707204..2707836 Shewanella frigidimarina NCIMB 400 4279173 YP_750946.1 CDS Sfri_2262 NC_008345.1 2707876 2709246 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2707876..2709246 Shewanella frigidimarina NCIMB 400 4279174 YP_750947.1 CDS Sfri_2263 NC_008345.1 2709340 2710482 D PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: son:SO2636 hypothetical protein; cupin 4 family protein 2709340..2710482 Shewanella frigidimarina NCIMB 400 4279175 YP_750948.1 CDS Sfri_2264 NC_008345.1 2710628 2711068 R KEGG: son:SO2637 hypothetical protein; hypothetical protein complement(2710628..2711068) Shewanella frigidimarina NCIMB 400 4279176 YP_750949.1 CDS Sfri_2265 NC_008345.1 2711353 2712384 D PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: son:SO2638 leucine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase 2711353..2712384 Shewanella frigidimarina NCIMB 400 4279177 YP_750950.1 CDS Sfri_2266 NC_008345.1 2712645 2713547 D PFAM: metallophosphoesterase; KEGG: son:SO1239 hypothetical protein; metallophosphoesterase 2712645..2713547 Shewanella frigidimarina NCIMB 400 4279178 YP_750951.1 CDS Sfri_2267 NC_008345.1 2713561 2715300 D PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO1238 acyltransferase family protein; phospholipid/glycerol acyltransferase 2713561..2715300 Shewanella frigidimarina NCIMB 400 4279179 YP_750952.1 CDS Sfri_2268 NC_008345.1 2715407 2715865 D PFAM: CBS domain containing protein; KEGG: son:SO1237 acetoin utilization protein AcuB, putative; signal transduction protein 2715407..2715865 Shewanella frigidimarina NCIMB 400 4279180 YP_750953.1 CDS Sfri_2269 NC_008345.1 2716224 2716568 D KEGG: son:SO2639 hypothetical protein; hypothetical protein 2716224..2716568 Shewanella frigidimarina NCIMB 400 4279181 YP_750954.1 CDS Sfri_2270 NC_008345.1 2716611 2717717 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO4043 TonB domain protein; TonB family protein complement(2716611..2717717) Shewanella frigidimarina NCIMB 400 4279182 YP_750955.1 CDS Sfri_2271 NC_008345.1 2717945 2718682 D PFAM: protein of unknown function DUF1538; KEGG: ppr:PBPRA2812 putative PTS system mannose-specific, factor IIC; hypothetical protein 2717945..2718682 Shewanella frigidimarina NCIMB 400 4279183 YP_750956.1 CDS Sfri_2272 NC_008345.1 2718713 2719480 D PFAM: protein of unknown function DUF1538; KEGG: ppr:PBPRA2811 hypothetical PTS system mannose-specific, factor IIC; hypothetical protein 2718713..2719480 Shewanella frigidimarina NCIMB 400 4279184 YP_750957.1 CDS Sfri_2273 NC_008345.1 2719484 2719834 D KEGG: vvy:VV0993 putative nitrogen regulatory protein P-II; putative nitrogen regulatory protein P-II 2719484..2719834 Shewanella frigidimarina NCIMB 400 4279185 YP_750958.1 CDS Sfri_2274 NC_008345.1 2719831 2720235 D PFAM: CBS domain containing protein; KEGG: ppr:PBPRA2809 hypothetical protein; signal-transduction protein 2719831..2720235 Shewanella frigidimarina NCIMB 400 4279186 YP_750959.1 CDS Sfri_2275 NC_008345.1 2720265 2721134 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppr:PBPRA1401 hypothetical transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(2720265..2721134) Shewanella frigidimarina NCIMB 400 4279187 YP_750960.1 CDS Sfri_2276 NC_008345.1 2721375 2721578 D KEGG: ppr:PBPRA1400 hypothetical protein; hypothetical protein 2721375..2721578 Shewanella frigidimarina NCIMB 400 4279188 YP_750961.1 CDS Sfri_2277 NC_008345.1 2721582 2722619 D PFAM: oxidoreductase domain protein; KEGG: lpn:lpg1321 oxidoreductase; oxidoreductase domain-containing protein 2721582..2722619 Shewanella frigidimarina NCIMB 400 4279189 YP_750962.1 CDS Sfri_2278 NC_008345.1 2722581 2722985 R PFAM: NUDIX hydrolase; KEGG: son:SO0464 MutT/nudix family protein; NUDIX hydrolase complement(2722581..2722985) Shewanella frigidimarina NCIMB 400 4279190 YP_750963.1 CDS Sfri_2279 NC_008345.1 2723034 2723468 R KEGG: cps:CPS_3134 hypothetical protein; hypothetical protein complement(2723034..2723468) Shewanella frigidimarina NCIMB 400 4279191 YP_750964.1 CDS Sfri_2280 NC_008345.1 2723994 2724470 D hypothetical protein 2723994..2724470 Shewanella frigidimarina NCIMB 400 4279192 YP_750965.1 CDS Sfri_2281 NC_008345.1 2724467 2724988 D PFAM: cation antiporter; KEGG: rru:Rru_A1641 cation antiporter; cation antiporter 2724467..2724988 Shewanella frigidimarina NCIMB 400 4279193 YP_750966.1 CDS Sfri_2282 NC_008345.1 2724991 2725272 D PFAM: multiple resistance and pH regulation protein F; KEGG: rru:Rru_A1640 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 2724991..2725272 Shewanella frigidimarina NCIMB 400 4279194 YP_750967.1 CDS Sfri_2283 NC_008345.1 2725265 2725624 D TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: rru:Rru_A1639 Na+/H+ antiporter subunit; monovalent cation/proton antiporter subunit MnhG/PhaG 2725265..2725624 Shewanella frigidimarina NCIMB 400 4279195 YP_750968.1 CDS Sfri_2284 NC_008345.1 2725621 2726601 D subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit B 2725621..2726601 Shewanella frigidimarina NCIMB 400 4279196 YP_750969.1 CDS Sfri_2285 NC_008345.1 2726598 2726957 D PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: rru:Rru_A1636 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase, chain 4L 2726598..2726957 Shewanella frigidimarina NCIMB 400 4279197 YP_750970.1 CDS Sfri_2286 NC_008345.1 2726963 2728276 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rba:RB1431 putative multicomponent Na+:H+ antiporter subunit D; NADH dehydrogenase (quinone) 2726963..2728276 Shewanella frigidimarina NCIMB 400 4279198 YP_750971.1 CDS Sfri_2287 NC_008345.1 2728245 2728454 D KEGG: rba:RB1431 putative multicomponent Na+:H+ antiporter subunit D; putative multicomponent Na+:H+ antiporter subunit D 2728245..2728454 Shewanella frigidimarina NCIMB 400 4279199 YP_750972.1 CDS Sfri_2288 NC_008345.1 2728451 2729917 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rru:Rru_A1634 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 2728451..2729917 Shewanella frigidimarina NCIMB 400 4279200 YP_750973.1 CDS Sfri_2289 NC_008345.1 2729919 2730233 D KEGG: rru:Rru_A1633 hypothetical protein; hypothetical protein 2729919..2730233 Shewanella frigidimarina NCIMB 400 4279201 YP_750974.1 CDS Sfri_2290 NC_008345.1 2730223 2731932 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit D 2730223..2731932 Shewanella frigidimarina NCIMB 400 4279202 YP_750975.1 CDS Sfri_2291 NC_008345.1 2732799 2735417 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: noc:Noc_2130 cation transporting ATPase, E1-E2 type; P-type HAD superfamily ATPase complement(2732799..2735417) Shewanella frigidimarina NCIMB 400 4279203 YP_750976.1 CDS Sfri_2292 NC_008345.1 2735419 2736003 R PFAM: protein of unknown function DUF125, transmembrane; KEGG: dps:DP2435 hypothetical protein; hypothetical protein complement(2735419..2736003) Shewanella frigidimarina NCIMB 400 4279204 YP_750977.1 CDS Sfri_2293 NC_008345.1 2736010 2736279 R PFAM: protein of unknown function DUF211; KEGG: dps:DP2436 hypothetical protein; hypothetical protein complement(2736010..2736279) Shewanella frigidimarina NCIMB 400 4279205 YP_750978.1 CDS Sfri_2294 NC_008345.1 2736878 2737297 R PFAM: regulatory protein, MarR; KEGG: son:SO2640 transcriptional regulator, MarR family; transcriptional regulator, MarR family protein complement(2736878..2737297) Shewanella frigidimarina NCIMB 400 4279206 YP_750979.1 CDS Sfri_2295 NC_008345.1 2737576 2738046 R KEGG: son:SO2642 hypothetical protein; hypothetical protein complement(2737576..2738046) Shewanella frigidimarina NCIMB 400 4279207 YP_750980.1 CDS Sfri_2296 NC_008345.1 2738056 2741127 R PFAM: FAD linked oxidase domain protein; KEGG: son:SO2643 oxidoreductase, FAD-binding, putative; FAD linked oxidase domain-containing protein complement(2738056..2741127) Shewanella frigidimarina NCIMB 400 4279208 YP_750981.1 CDS Sfri_2297 NC_008345.1 2741234 2743660 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(2741234..2743660) Shewanella frigidimarina NCIMB 400 4279209 YP_750982.1 CDS Sfri_2298 NC_008345.1 2743730 2744542 D PFAM: protein of unknown function DUF299; KEGG: son:SO2645 hypothetical protein; hypothetical protein 2743730..2744542 Shewanella frigidimarina NCIMB 400 4279210 YP_750983.1 CDS Sfri_2299 NC_008345.1 2744749 2745813 D tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 2744749..2745813 Shewanella frigidimarina NCIMB 400 4279211 YP_750984.1 CDS Sfri_2300 NC_008345.1 2745958 2747181 R PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO1387 HD domain protein; metal dependent phosphohydrolase complement(2745958..2747181) Shewanella frigidimarina NCIMB 400 4279212 YP_750985.1 CDS Sfri_2301 NC_008345.1 2747574 2748290 D PFAM: protein of unknown function DUF541; KEGG: ilo:IL1781 hypothetical protein; hypothetical protein 2747574..2748290 Shewanella frigidimarina NCIMB 400 4279213 YP_750986.1 CDS Sfri_2302 NC_008345.1 2748295 2748852 D PFAM: Phosphoglycerate mutase; KEGG: cps:CPS_0333 hypothetical protein; putative phosphohistidine phosphatase, SixA 2748295..2748852 Shewanella frigidimarina NCIMB 400 4279214 YP_750987.1 CDS Sfri_2303 NC_008345.1 2748934 2749200 D transcriptional antiterminator Rof 2748934..2749200 Shewanella frigidimarina NCIMB 400 4279215 YP_750988.1 CDS Sfri_2304 NC_008345.1 2749369 2749806 D PFAM: thioesterase superfamily protein; KEGG: son:SO2647 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 2749369..2749806 Shewanella frigidimarina NCIMB 400 4279216 YP_750989.1 CDS Sfri_2305 NC_008345.1 2749990 2750652 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO2648 DNA-binding response regulator, LuxR family; two component transcriptional regulator, LuxR family protein 2749990..2750652 Shewanella frigidimarina NCIMB 400 4279217 YP_750990.1 CDS Sfri_2306 NC_008345.1 2750652 2751266 D PFAM: protein of unknown function DUF938; KEGG: son:SO2050 hypothetical protein; hypothetical protein 2750652..2751266 Shewanella frigidimarina NCIMB 400 4279218 YP_750991.1 CDS Sfri_2307 NC_008345.1 2751550 2752395 D PFAM: Aldose 1-epimerase; KEGG: son:SO2769 hypothetical protein; aldose 1-epimerase 2751550..2752395 Shewanella frigidimarina NCIMB 400 4279219 YP_750992.1 CDS Sfri_2308 NC_008345.1 2752590 2752763 R KEGG: son:SO4430 hypothetical protein; hypothetical protein complement(2752590..2752763) Shewanella frigidimarina NCIMB 400 4279220 YP_750993.1 CDS ushA NC_008345.1 2752962 2754680 R catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic complement(2752962..2754680) Shewanella frigidimarina NCIMB 400 4279221 YP_750994.1 CDS Sfri_2310 NC_008345.1 2754992 2755660 R PFAM: phospholipase/Carboxylesterase; KEGG: son:SO1999 phospholipase/carboxylesterase family protein; carboxylesterase complement(2754992..2755660) Shewanella frigidimarina NCIMB 400 4279222 YP_750995.1 CDS Sfri_2311 NC_008345.1 2755791 2756018 R KEGG: son:SO1998 hypothetical protein; hypothetical protein complement(2755791..2756018) Shewanella frigidimarina NCIMB 400 4279223 YP_750996.1 CDS Sfri_2312 NC_008345.1 2756118 2756600 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1995 peptidyl-prolyl cis-trans isomerase, FkbP family; peptidylprolyl isomerase, FKBP-type complement(2756118..2756600) Shewanella frigidimarina NCIMB 400 4279224 YP_750997.1 CDS Sfri_2313 NC_008345.1 2756685 2757932 R TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO1994 membrane-bound lytic transglycolase-related protein; lytic murein transglycosylase complement(2756685..2757932) Shewanella frigidimarina NCIMB 400 4279225 YP_750998.1 CDS Sfri_2314 NC_008345.1 2758384 2758791 D KEGG: son:SO1991 hypothetical protein; hypothetical protein 2758384..2758791 Shewanella frigidimarina NCIMB 400 4279226 YP_750999.1 CDS Sfri_2315 NC_008345.1 2758856 2759515 D KEGG: son:SO1990 hypothetical protein; hypothetical protein 2758856..2759515 Shewanella frigidimarina NCIMB 400 4279227 YP_751000.1 CDS Sfri_2316 NC_008345.1 2759541 2760482 R PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO1989 chemotaxis protein CheV; response regulator receiver modulated CheW protein complement(2759541..2760482) Shewanella frigidimarina NCIMB 400 4279228 YP_751001.1 CDS Sfri_2317 NC_008345.1 2760998 2761588 D SMART: peptidase S16, lon domain protein; KEGG: son:SO1987 ATP-dependent protease La (LON) domain protein; peptidase S16, lon domain-containing protein 2760998..2761588 Shewanella frigidimarina NCIMB 400 4279229 YP_751002.1 CDS Sfri_2318 NC_008345.1 2761726 2762388 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO1986 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 2761726..2762388 Shewanella frigidimarina NCIMB 400 4279230 YP_751003.1 CDS Sfri_2319 NC_008345.1 2762381 2763067 D TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: son:SO1985 transcriptional activator, putative; anti-ECFsigma factor ChrR 2762381..2763067 Shewanella frigidimarina NCIMB 400 4279231 YP_751004.1 CDS Sfri_2320 NC_008345.1 2763749 2763922 D hypothetical protein 2763749..2763922 Shewanella frigidimarina NCIMB 400 4279232 YP_751005.1 CDS Sfri_2321 NC_008345.1 2764165 2765136 R KEGG: son:SO1978 hypothetical protein; hypothetical protein complement(2764165..2765136) Shewanella frigidimarina NCIMB 400 4279233 YP_751006.1 CDS Sfri_2322 NC_008345.1 2765334 2765747 D PFAM: protein of unknown function DUF307; KEGG: son:SO1977 hypothetical protein; hypothetical protein 2765334..2765747 Shewanella frigidimarina NCIMB 400 4279234 YP_751007.1 CDS Sfri_2323 NC_008345.1 2765904 2766371 D PFAM: protein of unknown function DUF55; KEGG: son:SO1969 hypothetical protein; hypothetical protein 2765904..2766371 Shewanella frigidimarina NCIMB 400 4279235 YP_751008.1 CDS Sfri_2324 NC_008345.1 2766553 2767341 R PFAM: protein of unknown function DUF124; KEGG: son:SO1966 conserved hypothetical protein TIGR00266; hypothetical protein complement(2766553..2767341) Shewanella frigidimarina NCIMB 400 4279236 YP_751009.1 CDS Sfri_2325 NC_008345.1 2767518 2768447 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1965 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(2767518..2768447) Shewanella frigidimarina NCIMB 400 4279237 YP_751010.1 CDS Sfri_2326 NC_008345.1 2768667 2769827 D PFAM: homogentisate 1,2-dioxygenase; KEGG: son:SO1963 homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygenase 2768667..2769827 Shewanella frigidimarina NCIMB 400 4279238 YP_751011.1 CDS Sfri_2327 NC_008345.1 2769898 2770938 D KEGG: son:SO1962 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2769898..2770938 Shewanella frigidimarina NCIMB 400 4279239 YP_751012.1 CDS Sfri_2328 NC_008345.1 2771042 2771659 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO1954 transporter, LysE family; lysine exporter protein LysE/YggA 2771042..2771659 Shewanella frigidimarina NCIMB 400 4279240 YP_751013.1 CDS Sfri_2329 NC_008345.1 2771701 2772879 R PFAM: protein of unknown function DUF482; KEGG: son:SO1953 hypothetical protein; hypothetical protein complement(2771701..2772879) Shewanella frigidimarina NCIMB 400 4279241 YP_751014.1 CDS Sfri_2330 NC_008345.1 2772992 2774743 D KEGG: son:SO1952 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2772992..2774743 Shewanella frigidimarina NCIMB 400 4279242 YP_751015.1 CDS Sfri_2331 NC_008345.1 2775201 2776817 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: hch:HCH_06069 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2775201..2776817 Shewanella frigidimarina NCIMB 400 4279243 YP_751016.1 CDS Sfri_2332 NC_008345.1 2776896 2778119 D KEGG: vvu:VV12353 hypothetical protein; hypothetical protein 2776896..2778119 Shewanella frigidimarina NCIMB 400 4279244 YP_751017.1 CDS Sfri_2333 NC_008345.1 2778131 2778526 D KEGG: sde:Sde_0340 hypothetical protein; hypothetical protein 2778131..2778526 Shewanella frigidimarina NCIMB 400 4279245 YP_751018.1 CDS Sfri_2334 NC_008345.1 2778764 2780947 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: bfs:BF3021 putative peptidyl-dipeptidase; peptidyl-dipeptidase Dcp 2778764..2780947 Shewanella frigidimarina NCIMB 400 4279246 YP_751019.1 CDS cpdB NC_008345.1 2781380 2783479 D periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein 2781380..2783479 Shewanella frigidimarina NCIMB 400 4279247 YP_751020.1 CDS Sfri_2336 NC_008345.1 2783606 2784091 R KEGG: son:SO1939 hypothetical protein; hypothetical protein complement(2783606..2784091) Shewanella frigidimarina NCIMB 400 4279248 YP_751021.1 CDS Sfri_2337 NC_008345.1 2784084 2784806 R Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(2784084..2784806) Shewanella frigidimarina NCIMB 400 4279249 YP_751022.1 CDS fur NC_008345.1 2785087 2785596 D negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 2785087..2785596 Shewanella frigidimarina NCIMB 400 4279250 YP_751023.1 CDS Sfri_2339 NC_008345.1 2785678 2786604 R PFAM: Auxin Efflux Carrier; KEGG: pha:PSHAa0980 hypothetical protein; auxin efflux carrier complement(2785678..2786604) Shewanella frigidimarina NCIMB 400 4279251 YP_751024.1 CDS Sfri_2340 NC_008345.1 2786728 2787600 R TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: son:SO1933 succinyl-CoA synthetase alpha chain; succinyl-CoA synthetase, alpha subunit complement(2786728..2787600) Shewanella frigidimarina NCIMB 400 4279252 YP_751025.1 CDS sucC NC_008345.1 2787600 2788766 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(2787600..2788766) Shewanella frigidimarina NCIMB 400 4279253 YP_751026.1 CDS Sfri_2342 NC_008345.1 2788842 2790038 R TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: son:SO1931 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase); 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase complement(2788842..2790038) Shewanella frigidimarina NCIMB 400 4279254 YP_751027.1 CDS sucA NC_008345.1 2790067 2792889 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(2790067..2792889) Shewanella frigidimarina NCIMB 400 4279255 YP_751028.1 CDS sdhB NC_008345.1 2793092 2793799 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(2793092..2793799) Shewanella frigidimarina NCIMB 400 4279256 YP_751029.1 CDS sdhA NC_008345.1 2793816 2795582 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(2793816..2795582) Shewanella frigidimarina NCIMB 400 4279257 YP_751030.1 CDS Sfri_2346 NC_008345.1 2795583 2795930 R PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: son:SO1927.1 hypothetical succinate dehydrogenase, hydrophobic subunit; succinate dehydrogenase, cytochrome b subunit complement(2795583..2795930) Shewanella frigidimarina NCIMB 400 4279258 YP_751031.1 CDS Sfri_2347 NC_008345.1 2795924 2796319 R PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: son:SO1927 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase, cytochrome b subunit complement(2795924..2796319) Shewanella frigidimarina NCIMB 400 4279259 YP_751032.1 CDS gltA NC_008345.1 2796729 2798015 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 2796729..2798015 Shewanella frigidimarina NCIMB 400 4279260 YP_751033.1 CDS Sfri_2349 NC_008345.1 2798694 2799131 R hypothetical protein complement(2798694..2799131) Shewanella frigidimarina NCIMB 400 4279261 YP_751034.1 CDS Sfri_2350 NC_008345.1 2799118 2799960 R KEGG: eli:ELI_07940 putative bacteriophage-acquired protein; hypothetical protein complement(2799118..2799960) Shewanella frigidimarina NCIMB 400 4279262 YP_751035.1 CDS Sfri_2352 NC_008345.1 2800994 2801359 R KEGG: vpa:VP1109 hypothetical protein; hypothetical protein complement(2800994..2801359) Shewanella frigidimarina NCIMB 400 4279263 YP_751036.1 CDS Sfri_2353 NC_008345.1 2801437 2801793 R hypothetical protein complement(2801437..2801793) Shewanella frigidimarina NCIMB 400 4279264 YP_751037.1 CDS Sfri_2354 NC_008345.1 2801936 2802295 R hypothetical protein complement(2801936..2802295) Shewanella frigidimarina NCIMB 400 4279265 YP_751038.1 CDS Sfri_2355 NC_008345.1 2802296 2806780 R TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: ppr:PBPRA0678 hypothetical nucleotidyltransferase; YD repeat-containing protein complement(2802296..2806780) Shewanella frigidimarina NCIMB 400 4279266 YP_751039.1 CDS Sfri_2356 NC_008345.1 2806787 2807731 R KEGG: ppr:PBPRA0677 hypothetical protein; hypothetical protein complement(2806787..2807731) Shewanella frigidimarina NCIMB 400 4279267 YP_751040.1 CDS Sfri_2357 NC_008345.1 2807728 2808828 R hypothetical protein complement(2807728..2808828) Shewanella frigidimarina NCIMB 400 4279268 YP_751041.1 CDS Sfri_2358 NC_008345.1 2808850 2809140 R PFAM: PAAR repeat-containing protein; KEGG: vpa:VPA1025 hypothetical protein; PAAR repeat-containing protein complement(2808850..2809140) Shewanella frigidimarina NCIMB 400 4279269 YP_751042.1 CDS Sfri_2359 NC_008345.1 2809183 2809536 R hypothetical protein complement(2809183..2809536) Shewanella frigidimarina NCIMB 400 4279270 YP_751043.1 CDS Sfri_2360 NC_008345.1 2809539 2811395 R PFAM: Rhs element Vgr protein; KEGG: ppr:PBPRA0675 hypothetical protein; Rhs element Vgr protein complement(2809539..2811395) Shewanella frigidimarina NCIMB 400 4279271 YP_751044.1 CDS Sfri_2361 NC_008345.1 2811466 2811945 R PFAM: protein of unknown function DUF796; KEGG: vpa:VPA1027 hypothetical protein; hypothetical protein complement(2811466..2811945) Shewanella frigidimarina NCIMB 400 4279272 YP_751045.1 CDS Sfri_2362 NC_008345.1 2812315 2814921 R PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: ppr:PBPRA0673 putative ATPase with chaperone activity; ATPase complement(2812315..2814921) Shewanella frigidimarina NCIMB 400 4279273 YP_751046.1 CDS Sfri_2363 NC_008345.1 2814941 2815948 R PFAM: protein of unknown function DUF1305; KEGG: vpa:VPA1029 hypothetical protein; hypothetical protein complement(2814941..2815948) Shewanella frigidimarina NCIMB 400 4279274 YP_751047.1 CDS Sfri_2364 NC_008345.1 2815945 2817774 R PFAM: protein of unknown function DUF879; KEGG: ppr:PBPRA0671 hypothetical protein; hypothetical protein complement(2815945..2817774) Shewanella frigidimarina NCIMB 400 4279275 YP_751048.1 CDS Sfri_2365 NC_008345.1 2817771 2818235 R PFAM: protein of unknown function DUF1316; KEGG: vvy:VVA0983 hypothetical protein; hypothetical protein complement(2817771..2818235) Shewanella frigidimarina NCIMB 400 4279276 YP_751049.1 CDS Sfri_2366 NC_008345.1 2818268 2819056 R PFAM: virulence protein, SciE type; KEGG: ppr:PBPRA0669 hypothetical protein; virulence protein, SciE type complement(2818268..2819056) Shewanella frigidimarina NCIMB 400 4279277 YP_751050.1 CDS Sfri_2367 NC_008345.1 2819071 2820606 R PFAM: protein of unknown function DUF877; KEGG: ppr:PBPRA0668 hypothetical protein; hypothetical protein complement(2819071..2820606) Shewanella frigidimarina NCIMB 400 4279278 YP_751051.1 CDS Sfri_2368 NC_008345.1 2820658 2822151 R PFAM: protein of unknown function DUF877; KEGG: ppr:PBPRA0667 hypothetical protein; hypothetical protein complement(2820658..2822151) Shewanella frigidimarina NCIMB 400 4279279 YP_751052.1 CDS Sfri_2369 NC_008345.1 2822151 2822651 R PFAM: Uncharacterised conserved protein UCP028301; KEGG: vpa:VPA1035 hypothetical protein; hypothetical protein complement(2822151..2822651) Shewanella frigidimarina NCIMB 400 4279280 YP_751053.1 CDS Sfri_2370 NC_008345.1 2822693 2823799 R PFAM: ImpA domain protein; KEGG: ppr:PBPRA0665 hypothetical protein; ImpA domain-containing protein complement(2822693..2823799) Shewanella frigidimarina NCIMB 400 4279281 YP_751054.1 CDS Sfri_2371 NC_008345.1 2824086 2824853 R PFAM: protein phosphatase 2C domain protein; KEGG: vvy:VVA0989 probable phosphoprotein phosphatase; protein serine/threonine phosphatase complement(2824086..2824853) Shewanella frigidimarina NCIMB 400 4279282 YP_751055.1 CDS Sfri_2372 NC_008345.1 2824844 2825575 R KEGG: ppr:PBPRA0663 hypothetical protein; hypothetical protein complement(2824844..2825575) Shewanella frigidimarina NCIMB 400 4279283 YP_751056.1 CDS Sfri_2373 NC_008345.1 2825557 2829105 R PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: ppr:PBPRA0662 hypothetical protein; ImcF domain-containing protein complement(2825557..2829105) Shewanella frigidimarina NCIMB 400 4279284 YP_751057.1 CDS Sfri_2374 NC_008345.1 2829129 2830418 R PFAM: OmpA/MotB domain protein; KEGG: ppr:PBPRA0661 hypothetical protein; OmpA/MotB domain-containing protein complement(2829129..2830418) Shewanella frigidimarina NCIMB 400 4279285 YP_751058.1 CDS Sfri_2375 NC_008345.1 2830443 2831771 R PFAM: protein of unknown function DUF876; KEGG: ppr:PBPRA0660 hypothetical protein; hypothetical protein complement(2830443..2831771) Shewanella frigidimarina NCIMB 400 4279286 YP_751059.1 CDS Sfri_2376 NC_008345.1 2831796 2832266 R KEGG: vpa:VPA1042 hypothetical protein; hypothetical protein complement(2831796..2832266) Shewanella frigidimarina NCIMB 400 4279287 YP_751060.1 CDS Sfri_2377 NC_008345.1 2832285 2833661 R PFAM: Forkhead-associated protein; KEGG: ppr:PBPRA0658 FHA domain-containing protein; FHA domain-containing protein complement(2832285..2833661) Shewanella frigidimarina NCIMB 400 4279288 YP_751061.1 CDS Sfri_2378 NC_008345.1 2833694 2835679 R PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ppr:PBPRA0657 hypothetical serine/threonine protein kinase; serine/threonine protein kinase complement(2833694..2835679) Shewanella frigidimarina NCIMB 400 4279289 YP_751062.1 CDS Sfri_2379 NC_008345.1 2835999 2836490 D PFAM: OmpA/MotB domain protein; KEGG: pfo:Pfl_1066 OmpA/MotB; OmpA/MotB domain-containing protein 2835999..2836490 Shewanella frigidimarina NCIMB 400 4279290 YP_751063.1 CDS Sfri_2380 NC_008345.1 2836885 2837727 R KEGG: son:SO2529 hypothetical protein; hypothetical protein complement(2836885..2837727) Shewanella frigidimarina NCIMB 400 4279291 YP_751064.1 CDS Sfri_2381 NC_008345.1 2838049 2839122 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1925 HlyD family secretion protein; RND family efflux transporter MFP subunit 2838049..2839122 Shewanella frigidimarina NCIMB 400 4279292 YP_751065.1 CDS Sfri_2382 NC_008345.1 2839135 2842386 D PFAM: acriflavin resistance protein; KEGG: son:SO1924 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 2839135..2842386 Shewanella frigidimarina NCIMB 400 4279293 YP_751066.1 CDS Sfri_2383 NC_008345.1 2842383 2845448 D PFAM: acriflavin resistance protein; KEGG: son:SO1923 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 2842383..2845448 Shewanella frigidimarina NCIMB 400 4279294 YP_751067.1 CDS Sfri_2384 NC_008345.1 2845678 2846562 D PFAM: beta-lactamase domain protein; KEGG: ilo:IL0617 Zn-dependent hydrolase, glyoxylase family; beta-lactamase domain-containing protein 2845678..2846562 Shewanella frigidimarina NCIMB 400 4279295 YP_751068.1 CDS Sfri_2385 NC_008345.1 2846678 2847409 R KEGG: hit:NTHI1650 hypothetical protein; Mn2+-dependent serine/threonine protein kinase complement(2846678..2847409) Shewanella frigidimarina NCIMB 400 4279296 YP_751069.1 CDS Sfri_2386 NC_008345.1 2847796 2847972 R PFAM: protein of unknown function DUF343; KEGG: son:SO2800 hypothetical protein; hypothetical protein complement(2847796..2847972) Shewanella frigidimarina NCIMB 400 4279297 YP_751070.1 CDS lpxK NC_008345.1 2847962 2848969 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(2847962..2848969) Shewanella frigidimarina NCIMB 400 4279298 YP_751071.1 CDS Sfri_2388 NC_008345.1 2848986 2850788 R KEGG: son:SO2802 ABC transporter, ATP-binding protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA complement(2848986..2850788) Shewanella frigidimarina NCIMB 400 4279299 YP_751072.1 CDS Sfri_2389 NC_008345.1 2850826 2853321 R TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: son:SO2803 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 complement(2850826..2853321) Shewanella frigidimarina NCIMB 400 4279300 YP_751073.1 CDS Sfri_2390 NC_008345.1 2853353 2853862 D KEGG: son:SO2804 hypothetical protein; hypothetical protein 2853353..2853862 Shewanella frigidimarina NCIMB 400 4279301 YP_751074.1 CDS Sfri_2391 NC_008345.1 2853923 2854354 R PFAM: regulatory protein, MarR; KEGG: vfi:VFA0025 transcriptional regulator, MarR family; transcriptional regulator, MarR family protein complement(2853923..2854354) Shewanella frigidimarina NCIMB 400 4279302 YP_751075.1 CDS Sfri_2392 NC_008345.1 2854552 2855346 D PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: pha:PSHAb0539 putative protein involved in iron transport; FAD-binding 9, siderophore-interacting domain-containing protein 2854552..2855346 Shewanella frigidimarina NCIMB 400 4279303 YP_751076.1 CDS Sfri_2393 NC_008345.1 2855547 2855807 R KEGG: son:SO1746 hypothetical protein; hypothetical protein complement(2855547..2855807) Shewanella frigidimarina NCIMB 400 4279304 YP_751077.1 CDS Sfri_2394 NC_008345.1 2855804 2856400 R PFAM: GCN5-related N-acetyltransferase; KEGG: bpm:BURPS1710b_2160 ribosomal-protein-serine acetyltransferase; N-acetyltransferase GCN5 complement(2855804..2856400) Shewanella frigidimarina NCIMB 400 4279305 YP_751078.1 CDS Sfri_2395 NC_008345.1 2856410 2857651 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: son:SO2259 lipoprotein releasing system transmembrane protein LolC, putative; lipoprotein releasing system, transmembrane protein, LolC/E family protein complement(2856410..2857651) Shewanella frigidimarina NCIMB 400 4279306 YP_751079.1 CDS Sfri_2396 NC_008345.1 2857648 2858367 R KEGG: son:SO2258 lipoprotein releasing system ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein complement(2857648..2858367) Shewanella frigidimarina NCIMB 400 4279307 YP_751080.1 CDS Sfri_2397 NC_008345.1 2858367 2859611 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: son:SO2257 lipoprotein releasing system transmembrane protein LolE; lipoprotein releasing system, transmembrane protein, LolC/E family protein complement(2858367..2859611) Shewanella frigidimarina NCIMB 400 4279308 YP_751081.1 CDS Sfri_2398 NC_008345.1 2859769 2860368 D KEGG: son:SO2256 hypothetical protein; hypothetical protein 2859769..2860368 Shewanella frigidimarina NCIMB 400 4279309 YP_751082.1 CDS Sfri_2399 NC_008345.1 2860423 2863959 D TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO2255 transcription-repair coupling factor; transcription-repair coupling factor 2860423..2863959 Shewanella frigidimarina NCIMB 400 4279310 YP_751083.1 CDS Sfri_2400 NC_008345.1 2863949 2864941 D KEGG: son:SO2254 hypothetical protein; hypothetical protein 2863949..2864941 Shewanella frigidimarina NCIMB 400 4279311 YP_751084.1 CDS Sfri_2401 NC_008345.1 2865078 2866103 R hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase complement(2865078..2866103) Shewanella frigidimarina NCIMB 400 4279312 YP_751085.1 CDS Sfri_2402 NC_008345.1 2866337 2867713 D KEGG: son:SO2248 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 2866337..2867713 Shewanella frigidimarina NCIMB 400 4279313 YP_751086.1 CDS Sfri_2403 NC_008345.1 2867923 2868390 R PFAM: CreA family protein; KEGG: cps:CPS_1436 CreA protein; CreA family protein complement(2867923..2868390) Shewanella frigidimarina NCIMB 400 4279314 YP_751087.1 CDS Sfri_2404 NC_008345.1 2868723 2870129 R KEGG: son:SO2189 conserved hypothetical protein; putative chaperone complement(2868723..2870129) Shewanella frigidimarina NCIMB 400 4279315 YP_751088.1 CDS Sfri_2405 NC_008345.1 2870490 2870762 D hypothetical protein 2870490..2870762 Shewanella frigidimarina NCIMB 400 4279316 YP_751089.1 CDS Sfri_2406 NC_008345.1 2870824 2871156 R PFAM: conserved hypothetical protein 103; KEGG: son:SO2014 conserved hypothetical protein TIGR00103; hypothetical protein complement(2870824..2871156) Shewanella frigidimarina NCIMB 400 4279317 YP_751090.1 CDS Sfri_2407 NC_008345.1 2871300 2874119 R KEGG: son:SO2013 DNA polymerase III, gamma and tau subunits; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau complement(2871300..2874119) Shewanella frigidimarina NCIMB 400 4279318 YP_751091.1 CDS Sfri_2408 NC_008345.1 2874270 2874818 R KEGG: son:SO2012 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; adenine phosphoribosyltransferase complement(2874270..2874818) Shewanella frigidimarina NCIMB 400 4279319 YP_751092.1 CDS Sfri_2409 NC_008345.1 2874956 2875321 R PFAM: protein of unknown function DUF454; KEGG: son:SO2011 hypothetical protein; hypothetical protein complement(2874956..2875321) Shewanella frigidimarina NCIMB 400 4279320 YP_751093.1 CDS Sfri_2410 NC_008345.1 2875405 2875524 R KEGG: son:SO2010 hypothetical protein; hypothetical protein complement(2875405..2875524) Shewanella frigidimarina NCIMB 400 4279321 YP_751094.1 CDS Sfri_2411 NC_008345.1 2875698 2876459 R KEGG: son:SO2009 hypothetical protein; hypothetical protein complement(2875698..2876459) Shewanella frigidimarina NCIMB 400 4279322 YP_751095.1 CDS Sfri_2412 NC_008345.1 2876459 2877322 R PFAM: protein of unknown function DUF692; KEGG: son:SO2008 hypothetical protein; hypothetical protein complement(2876459..2877322) Shewanella frigidimarina NCIMB 400 4279323 YP_751096.1 CDS Sfri_2413 NC_008345.1 2877423 2877851 R KEGG: son:SO2007 hypothetical protein; hypothetical protein complement(2877423..2877851) Shewanella frigidimarina NCIMB 400 4279324 YP_751097.1 CDS Sfri_2414 NC_008345.1 2878179 2879123 D PFAM: dihydrouridine synthase, DuS; KEGG: son:SO2006 NifR3/Smm1 family protein; dihydrouridine synthase, DuS 2878179..2879123 Shewanella frigidimarina NCIMB 400 4279325 YP_751098.1 CDS Sfri_2415 NC_008345.1 2879456 2879827 D KEGG: son:SO2005 DksA-type zinc finger protein; transcriptional regulators, TraR/DksA family protein 2879456..2879827 Shewanella frigidimarina NCIMB 400 4279326 YP_751099.1 CDS Sfri_2416 NC_008345.1 2879956 2882484 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2427 TonB-dependent receptor, putative; TonB-dependent receptor complement(2879956..2882484) Shewanella frigidimarina NCIMB 400 4279327 YP_751100.1 CDS Sfri_2417 NC_008345.1 2883277 2883771 R PFAM: nucleoside diphosphate kinase; KEGG: pha:PSHAb0142 nucleoside diphosphate kinase; nucleoside-diphosphate kinase complement(2883277..2883771) Shewanella frigidimarina NCIMB 400 4279328 YP_751101.1 CDS Sfri_2418 NC_008345.1 2883874 2884770 R TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO2270 ribosomal protein S6 modification protein; alpha-L-glutamate ligase complement(2883874..2884770) Shewanella frigidimarina NCIMB 400 4279329 YP_751102.1 CDS Sfri_2419 NC_008345.1 2884943 2885278 R TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: son:SO2269 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S type, ISC system complement(2884943..2885278) Shewanella frigidimarina NCIMB 400 4279330 YP_751103.1 CDS hscA NC_008345.1 2885287 2887146 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(2885287..2887146) Shewanella frigidimarina NCIMB 400 4279331 YP_751104.1 CDS hscB NC_008345.1 2887219 2887743 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(2887219..2887743) Shewanella frigidimarina NCIMB 400 4279332 YP_751105.1 CDS Sfri_2422 NC_008345.1 2887800 2888123 R TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: son:SO2266 HesB/YadR/YfhF family protein; iron-sulfur cluster assembly protein IscA complement(2887800..2888123) Shewanella frigidimarina NCIMB 400 4279333 YP_751106.1 CDS Sfri_2423 NC_008345.1 2888138 2888521 R TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: son:SO2265 NifU family protein; scaffold protein complement(2888138..2888521) Shewanella frigidimarina NCIMB 400 4279334 YP_751107.1 CDS Sfri_2424 NC_008345.1 2888594 2889808 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(2888594..2889808) Shewanella frigidimarina NCIMB 400 4279335 YP_751108.1 CDS Sfri_2425 NC_008345.1 2889890 2890351 R TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: son:SO2263 Rrf2 family protein; BadM/Rrf2 family transcriptional regulator complement(2889890..2890351) Shewanella frigidimarina NCIMB 400 4279336 YP_751109.1 CDS Sfri_2426 NC_008345.1 2890584 2891405 R TIGRFAM: serine O-acetyltransferase; KEGG: son:SO2262 serine acetyltransferase; serine O-acetyltransferase complement(2890584..2891405) Shewanella frigidimarina NCIMB 400 4279337 YP_751110.1 CDS Sfri_2427 NC_008345.1 2891424 2892146 R TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO2261 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase complement(2891424..2892146) Shewanella frigidimarina NCIMB 400 4279338 YP_751111.1 CDS Sfri_2428 NC_008345.1 2892297 2893100 D PFAM: inositol monophosphatase; KEGG: son:SO2260 extragenic suppressor protein SuhB; inositol monophosphatase 2892297..2893100 Shewanella frigidimarina NCIMB 400 4279339 YP_751112.1 CDS Sfri_2429 NC_008345.1 2893359 2893775 D PFAM: phosphate-starvation-inducible E; KEGG: son:SO2806 hypothetical protein; phosphate-starvation-inducible E 2893359..2893775 Shewanella frigidimarina NCIMB 400 4279340 YP_751113.1 CDS Sfri_2430 NC_008345.1 2894035 2894337 D PFAM: type IV pilus assembly PilZ; KEGG: son:SO2807 hypothetical protein; type IV pilus assembly PilZ 2894035..2894337 Shewanella frigidimarina NCIMB 400 4279341 YP_751114.1 CDS Sfri_2431 NC_008345.1 2894440 2895108 D KEGG: son:SO2808 hypothetical protein; hypothetical protein 2894440..2895108 Shewanella frigidimarina NCIMB 400 4279342 YP_751115.1 CDS Sfri_2432 NC_008345.1 2895095 2895445 D KEGG: son:SO2809 RepA domain protein; RepA domain-containing protein 2895095..2895445 Shewanella frigidimarina NCIMB 400 4279343 YP_751116.1 CDS Sfri_2433 NC_008345.1 2895846 2897522 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: son:SO2822 sensor histidine kinase; signal transduction histidine kinase LytS 2895846..2897522 Shewanella frigidimarina NCIMB 400 4279344 YP_751117.1 CDS Sfri_2434 NC_008345.1 2897519 2898229 D unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT 2897519..2898229 Shewanella frigidimarina NCIMB 400 4279345 YP_751118.1 CDS Sfri_2435 NC_008345.1 2898404 2899864 D PFAM: carbon starvation protein CstA; KEGG: vpa:VP0540 putative carbon starvation protein A; carbon starvation protein CstA 2898404..2899864 Shewanella frigidimarina NCIMB 400 4279346 YP_751119.1 CDS Sfri_2436 NC_008345.1 2899974 2900366 D KEGG: son:SO2827 hypothetical protein; hypothetical protein 2899974..2900366 Shewanella frigidimarina NCIMB 400 4279347 YP_751120.1 CDS Sfri_2437 NC_008345.1 2900394 2901323 R KEGG: son:SO2830 hypothetical protein; hypothetical protein complement(2900394..2901323) Shewanella frigidimarina NCIMB 400 4279348 YP_751121.1 CDS ribA NC_008345.1 2901345 2901953 R catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II complement(2901345..2901953) Shewanella frigidimarina NCIMB 400 4279349 YP_751122.1 CDS Sfri_2439 NC_008345.1 2901991 2902347 R KEGG: son:SO2832 hypothetical protein; hypothetical protein complement(2901991..2902347) Shewanella frigidimarina NCIMB 400 4279350 YP_751123.1 CDS Sfri_2440 NC_008345.1 2902797 2905274 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1482 TonB-dependent receptor, putative; TonB-dependent receptor, plug 2902797..2905274 Shewanella frigidimarina NCIMB 400 4279351 YP_751124.1 CDS Sfri_2441 NC_008345.1 2905481 2906719 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bur:Bcep18194_B2709 NADH-flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 2905481..2906719 Shewanella frigidimarina NCIMB 400 4279352 YP_751125.1 CDS nrdG NC_008345.1 2906824 2907291 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein complement(2906824..2907291) Shewanella frigidimarina NCIMB 400 4279353 YP_751126.1 CDS Sfri_2443 NC_008345.1 2907291 2909408 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(2907291..2909408) Shewanella frigidimarina NCIMB 400 4279354 YP_751127.1 CDS Sfri_2444 NC_008345.1 2910061 2910999 R PFAM: Patatin; KEGG: son:SO2836 hypothetical protein; patatin complement(2910061..2910999) Shewanella frigidimarina NCIMB 400 4279355 YP_751128.1 CDS Sfri_2445 NC_008345.1 2911180 2912535 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2838 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 2911180..2912535 Shewanella frigidimarina NCIMB 400 4279356 YP_751129.1 CDS Sfri_2446 NC_008345.1 2912695 2913132 D KEGG: son:SO2839 hypothetical protein; hypothetical protein 2912695..2913132 Shewanella frigidimarina NCIMB 400 4279357 YP_751130.1 CDS Sfri_2447 NC_008345.1 2913259 2913858 D PFAM: protein of unknown function DUF45; KEGG: son:SO2840 hypothetical protein; hypothetical protein 2913259..2913858 Shewanella frigidimarina NCIMB 400 4279358 YP_751131.1 CDS Sfri_2448 NC_008345.1 2913937 2914311 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL1591 glyoxalase/dioxygenase superfamily protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(2913937..2914311) Shewanella frigidimarina NCIMB 400 4279359 YP_751132.1 CDS Sfri_2449 NC_008345.1 2914344 2914517 R KEGG: bur:Bcep18194_B0771 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2914344..2914517) Shewanella frigidimarina NCIMB 400 4279360 YP_751133.1 CDS Sfri_2450 NC_008345.1 2914819 2916105 R PFAM: peptidase M23B; Opacity-associated protein A; KEGG: son:SO2842 peptidase, M23/M37 family; peptidase M23B complement(2914819..2916105) Shewanella frigidimarina NCIMB 400 4279361 YP_751134.1 CDS Sfri_2451 NC_008345.1 2916418 2920116 R PFAM: SMC domain protein; KEGG: eca:ECA1108 exonuclease; SMC domain-containing protein complement(2916418..2920116) Shewanella frigidimarina NCIMB 400 4279362 YP_751135.1 CDS Sfri_2452 NC_008345.1 2920116 2921444 R with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD complement(2920116..2921444) Shewanella frigidimarina NCIMB 400 4279363 YP_751136.1 CDS Sfri_2453 NC_008345.1 2921551 2922354 R PFAM: protein of unknown function DUF81; KEGG: son:SO2846 hypothetical protein; hypothetical protein complement(2921551..2922354) Shewanella frigidimarina NCIMB 400 4279364 YP_751137.1 CDS Sfri_2454 NC_008345.1 2922610 2923287 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ppr:PBPRA1938 putative short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2922610..2923287 Shewanella frigidimarina NCIMB 400 4279365 YP_751138.1 CDS Sfri_2455 NC_008345.1 2923666 2923902 D KEGG: son:SO1487 hypothetical protein; hypothetical protein 2923666..2923902 Shewanella frigidimarina NCIMB 400 4279366 YP_751139.1 CDS Sfri_2456 NC_008345.1 2923996 2924382 R PFAM: protein of unknown function DUF1260; KEGG: son:SO1836 hypothetical protein; hypothetical protein complement(2923996..2924382) Shewanella frigidimarina NCIMB 400 4279367 YP_751140.1 CDS Sfri_2457 NC_008345.1 2924393 2924626 R PFAM: RNA-binding S4 domain protein; KEGG: son:SO1835 hypothetical protein; RNA-binding S4 domain-containing protein complement(2924393..2924626) Shewanella frigidimarina NCIMB 400 4279368 YP_751141.1 CDS Sfri_2458 NC_008345.1 2924677 2925483 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: son:SO2861 hypothetical protein; NAD-dependent epimerase/dehydratase complement(2924677..2925483) Shewanella frigidimarina NCIMB 400 4279369 YP_751142.1 CDS Sfri_2459 NC_008345.1 2925511 2926713 R KEGG: son:SO2862 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(2925511..2926713) Shewanella frigidimarina NCIMB 400 4279370 YP_751143.1 CDS Sfri_2460 NC_008345.1 2926868 2927389 R KEGG: son:SO2863 hypothetical protein; hypothetical protein complement(2926868..2927389) Shewanella frigidimarina NCIMB 400 4279371 YP_751144.1 CDS Sfri_2461 NC_008345.1 2927444 2929456 R KEGG: son:SO2896 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase complement(2927444..2929456) Shewanella frigidimarina NCIMB 400 4279372 YP_751145.1 CDS Sfri_2462 NC_008345.1 2929558 2930616 R TIGRFAM: cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; KEGG: son:SO2897 cell division protein ZipA; cell division protein ZipA complement(2929558..2930616) Shewanella frigidimarina NCIMB 400 4279373 YP_751146.1 CDS Sfri_2463 NC_008345.1 2930638 2934072 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: son:SO2898 SMC family protein; chromosome segregation protein SMC complement(2930638..2934072) Shewanella frigidimarina NCIMB 400 4279374 YP_751147.1 CDS Sfri_2464 NC_008345.1 2934233 2935006 D putative role in sulfur assimilation; putative sulfate transport protein CysZ 2934233..2935006 Shewanella frigidimarina NCIMB 400 4279375 YP_751148.1 CDS Sfri_2465 NC_008345.1 2935264 2937675 D KEGG: son:SO2900 hypothetical protein; hypothetical protein 2935264..2937675 Shewanella frigidimarina NCIMB 400 4279376 YP_751149.1 CDS Sfri_2466 NC_008345.1 2937789 2939009 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: hch:HCH_06018 response regulator containing a CheY-like receiver domain and a GGDEF domain; diguanylate cyclase complement(2937789..2939009) Shewanella frigidimarina NCIMB 400 4279377 YP_751150.1 CDS Sfri_2467 NC_008345.1 2939052 2940173 R catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(2939052..2940173) Shewanella frigidimarina NCIMB 400 4279378 YP_751151.1 CDS Sfri_2468 NC_008345.1 2940560 2941525 D TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: son:SO2903 cysteine synthase A; cysteine synthase A 2940560..2941525 Shewanella frigidimarina NCIMB 400 4279379 YP_751152.1 CDS Sfri_2469 NC_008345.1 2941840 2942733 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vvy:VVA0738 transcriptional regulator; transcriptional regulator, LysR family protein 2941840..2942733 Shewanella frigidimarina NCIMB 400 4279380 YP_751153.1 CDS Sfri_2470 NC_008345.1 2942800 2944476 R PFAM: formate/nitrite transporter; CBS domain containing protein; KEGG: son:SO2911 formate transporter, putative; formate/nitrite transporter complement(2942800..2944476) Shewanella frigidimarina NCIMB 400 4279381 YP_751154.1 CDS Sfri_2471 NC_008345.1 2945933 2948806 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcv:XCV2894 TonB-dependent outer membrane receptor; TonB-dependent receptor 2945933..2948806 Shewanella frigidimarina NCIMB 400 4279382 YP_751155.1 CDS Sfri_2472 NC_008345.1 2949493 2951025 D KEGG: ppr:PBPRA2749 hypothetical integral membrane protein; hypothetical protein 2949493..2951025 Shewanella frigidimarina NCIMB 400 4279383 YP_751156.1 CDS Sfri_2473 NC_008345.1 2951431 2953713 D KEGG: son:SO2912 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; formate acetyltransferase 2951431..2953713 Shewanella frigidimarina NCIMB 400 4279384 YP_751157.1 CDS pflA NC_008345.1 2953792 2954529 D activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 2953792..2954529 Shewanella frigidimarina NCIMB 400 4279385 YP_751158.1 CDS Sfri_2475 NC_008345.1 2954583 2955020 R PFAM: protein of unknown function DUF412; KEGG: son:SO2914 hypothetical protein; hypothetical protein complement(2954583..2955020) Shewanella frigidimarina NCIMB 400 4279386 YP_751159.1 CDS Sfri_2476 NC_008345.1 2955250 2956452 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2955250..2956452 Shewanella frigidimarina NCIMB 400 4279387 YP_751160.1 CDS Sfri_2477 NC_008345.1 2956515 2958662 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2956515..2958662 Shewanella frigidimarina NCIMB 400 4279388 YP_751161.1 CDS Sfri_2478 NC_008345.1 2958949 2961636 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(2958949..2961636) Shewanella frigidimarina NCIMB 400 4279389 YP_751162.1 CDS Sfri_2479 NC_008345.1 2961980 2963314 D catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 2961980..2963314 Shewanella frigidimarina NCIMB 400 4279390 YP_751163.1 CDS Sfri_2480 NC_008345.1 2963473 2965935 R PFAM: Ig domain protein, group 1 domain protein; KEGG: cps:CPS_1195 intimin/invasin family protein; Ig domain-containing protein complement(2963473..2965935) Shewanella frigidimarina NCIMB 400 4279391 YP_751164.1 CDS Sfri_2481 NC_008345.1 2966159 2967469 D PFAM: sodium:dicarboxylate symporter; KEGG: son:SO1948 sodium:dicarboxylate symporter family protein; sodium:dicarboxylate symporter 2966159..2967469 Shewanella frigidimarina NCIMB 400 4279392 YP_751165.1 CDS Sfri_2482 NC_008345.1 2967657 2968331 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO0765 threonine efflux protein, putative; lysine exporter protein LysE/YggA 2967657..2968331 Shewanella frigidimarina NCIMB 400 4279393 YP_751166.1 CDS Sfri_2483 NC_008345.1 2968444 2969961 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cps:CPS_3311 putative phosphonate ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(2968444..2969961) Shewanella frigidimarina NCIMB 400 4279394 YP_751167.1 CDS Sfri_2484 NC_008345.1 2970019 2970696 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_3310 putative phosphonate ABC transporter, ATP-binding protein; ABC transporter complement(2970019..2970696) Shewanella frigidimarina NCIMB 400 4279395 YP_751168.1 CDS Sfri_2485 NC_008345.1 2970696 2971550 R TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: cps:CPS_3309 putative phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter, periplasmic phosphonate-binding protein complement(2970696..2971550) Shewanella frigidimarina NCIMB 400 4279396 YP_751169.1 CDS Sfri_2486 NC_008345.1 2971790 2972464 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1946 transcriptional regulatory protein PhoP; two component transcriptional regulator, winged helix family protein 2971790..2972464 Shewanella frigidimarina NCIMB 400 4279397 YP_751170.1 CDS Sfri_2487 NC_008345.1 2972455 2973807 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1945 sensor protein PhoQ; periplasmic sensor signal transduction histidine kinase 2972455..2973807 Shewanella frigidimarina NCIMB 400 4279398 YP_751171.1 CDS Sfri_2488 NC_008345.1 2973878 2974573 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO1944 hypothetical protein; 2OG-Fe(II) oxygenase complement(2973878..2974573) Shewanella frigidimarina NCIMB 400 4279399 YP_751172.1 CDS Sfri_2489 NC_008345.1 2974689 2975939 D KEGG: son:SO1942 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 2974689..2975939 Shewanella frigidimarina NCIMB 400 4279400 YP_751173.1 CDS Sfri_2490 NC_008345.1 2976116 2977063 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein, CorA family protein; KEGG: son:SO1941 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA complement(2976116..2977063) Shewanella frigidimarina NCIMB 400 4279401 YP_751174.1 CDS Sfri_2491 NC_008345.1 2977515 2978543 R PFAM: 37kDa nucleoid-associated protein; KEGG: son:SO2177 hypothetical protein; nucleoid-associated protein NdpA complement(2977515..2978543) Shewanella frigidimarina NCIMB 400 4279402 YP_751175.1 CDS Sfri_2492 NC_008345.1 2978727 2978939 D PFAM: protein of unknown function DUF1414; KEGG: son:SO2176 hypothetical protein; hypothetical protein 2978727..2978939 Shewanella frigidimarina NCIMB 400 4279403 YP_751176.1 CDS Sfri_2493 NC_008345.1 2979025 2980815 D PFAM: sulfatase; KEGG: son:SO2175 hypothetical protein; sulfatase 2979025..2980815 Shewanella frigidimarina NCIMB 400 4279404 YP_751177.1 CDS Sfri_2494 NC_008345.1 2981546 2981986 R KEGG: aci:ACIAD0819 hypothetical protein; putative signal peptide; hypothetical protein complement(2981546..2981986) Shewanella frigidimarina NCIMB 400 4279405 YP_751178.1 CDS Sfri_2495 NC_008345.1 2982841 2983548 R KEGG: cte:CT1157 hypothetical protein; hypothetical protein complement(2982841..2983548) Shewanella frigidimarina NCIMB 400 4279406 YP_751179.1 CDS Sfri_2497 NC_008345.1 2984943 2985872 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: ssp:SSP0073 putative restriction endonuclease; HNH endonuclease complement(2984943..2985872) Shewanella frigidimarina NCIMB 400 4279407 YP_751180.1 CDS Sfri_2498 NC_008345.1 2986532 2987971 R PFAM: Ankyrin; KEGG: ani:AN8019.2 hypothetical protein; ankyrin complement(2986532..2987971) Shewanella frigidimarina NCIMB 400 4279408 YP_751181.1 CDS Sfri_2499 NC_008345.1 2988088 2990166 R KEGG: gsu:GSU3414 hypothetical protein; hypothetical protein complement(2988088..2990166) Shewanella frigidimarina NCIMB 400 4279409 YP_751182.1 CDS Sfri_2500 NC_008345.1 2991322 2991978 D PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: cps:CPS_1156 glutathione-S-transferase domain protein; glutathione S-transferase domain-containing protein 2991322..2991978 Shewanella frigidimarina NCIMB 400 4279410 YP_751183.1 CDS Sfri_2501 NC_008345.1 2992131 2992889 R KEGG: ppr:PBPRA1945 hypothetical protein; hypothetical protein complement(2992131..2992889) Shewanella frigidimarina NCIMB 400 4279411 YP_751184.1 CDS Sfri_2502 NC_008345.1 2993350 2994207 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: sil:SPO0261 hypothetical protein; hypothetical protein complement(2993350..2994207) Shewanella frigidimarina NCIMB 400 4279412 YP_751185.1 CDS Sfri_2503 NC_008345.1 2994580 2996286 R activates fatty acids by binding to coenzyme A; AMP-binding protein complement(2994580..2996286) Shewanella frigidimarina NCIMB 400 4279413 YP_751186.1 CDS Sfri_2504 NC_008345.1 2996780 3000178 D KEGG: pha:PSHAa1151 two-component member protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MHYT domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 2996780..3000178 Shewanella frigidimarina NCIMB 400 4279414 YP_751187.1 CDS Sfri_2505 NC_008345.1 3000193 3001188 D PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: pha:PSHAa1150 response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase); response regulator receiver modulated metal dependent phosphohydrolase 3000193..3001188 Shewanella frigidimarina NCIMB 400 4279415 YP_751188.1 CDS Sfri_2506 NC_008345.1 3001314 3002519 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pha:PSHAa2207 carbohydrates permease; major facilitator transporter 3001314..3002519 Shewanella frigidimarina NCIMB 400 4279416 YP_751189.1 CDS Sfri_2507 NC_008345.1 3002769 3003962 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cps:CPS_3978 oxidoreductase, FAD/FMN-binding; NADH:flavin oxidoreductase complement(3002769..3003962) Shewanella frigidimarina NCIMB 400 4279417 YP_751190.1 CDS Sfri_2509 NC_008345.1 3004749 3005627 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0295 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 3004749..3005627 Shewanella frigidimarina NCIMB 400 4279418 YP_751191.1 CDS Sfri_2510 NC_008345.1 3005760 3006128 R KEGG: son:SO3623 tetraheme cytochrome c; tetraheme cytochrome c complement(3005760..3006128) Shewanella frigidimarina NCIMB 400 4279419 YP_751192.1 CDS Sfri_2511 NC_008345.1 3006139 3007662 R TIGRFAM: Twin-arginine translocation pathway signal; flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO3058 flavocytochrome c flavin subunit, putative; flavocytochrome c complement(3006139..3007662) Shewanella frigidimarina NCIMB 400 4279420 YP_751193.1 CDS Sfri_2512 NC_008345.1 3008292 3009191 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_3977 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 3008292..3009191 Shewanella frigidimarina NCIMB 400 4279421 YP_751194.1 CDS Sfri_2513 NC_008345.1 3009313 3010800 R PFAM: glutathione synthase; glutathione synthase, ATP-binding; KEGG: vfi:VF0976 glutathione synthetase; glutathione synthase complement(3009313..3010800) Shewanella frigidimarina NCIMB 400 4279422 YP_751195.1 CDS Sfri_2514 NC_008345.1 3010993 3011532 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigZ complement(3010993..3011532) Shewanella frigidimarina NCIMB 400 4279423 YP_751196.1 CDS Sfri_2515 NC_008345.1 3011634 3011927 R SMART: regulatory protein, ArsR; KEGG: vpa:VPA0462 hypothetical protein; putative transcriptional regulator, ArsR family protein complement(3011634..3011927) Shewanella frigidimarina NCIMB 400 4279424 YP_751197.1 CDS Sfri_2516 NC_008345.1 3012019 3012969 D PFAM: permease; KEGG: vfi:VFA0175 hypothetical membrane spanning protein; permease 3012019..3012969 Shewanella frigidimarina NCIMB 400 4279425 YP_751198.1 CDS Sfri_2517 NC_008345.1 3013249 3014412 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: son:SO2045 cation efflux family protein; cation diffusion facilitator family transporter 3013249..3014412 Shewanella frigidimarina NCIMB 400 4279426 YP_751199.1 CDS Sfri_2518 NC_008345.1 3014421 3014828 D PFAM: regulatory protein, MarR; KEGG: vpa:VPA1286 putative transcriptional regulator; transcriptional regulator, MarR family protein 3014421..3014828 Shewanella frigidimarina NCIMB 400 4279427 YP_751200.1 CDS Sfri_2519 NC_008345.1 3015000 3015335 R hypothetical protein complement(3015000..3015335) Shewanella frigidimarina NCIMB 400 4279428 YP_751201.1 CDS Sfri_2520 NC_008345.1 3015363 3015884 R KEGG: cps:CPS_4861 hypothetical protein; hypothetical protein complement(3015363..3015884) Shewanella frigidimarina NCIMB 400 4279429 YP_751202.1 CDS Sfri_2521 NC_008345.1 3015898 3016596 R KEGG: cps:CPS_4862 hypothetical protein; hypothetical protein complement(3015898..3016596) Shewanella frigidimarina NCIMB 400 4279430 YP_751203.1 CDS Sfri_2522 NC_008345.1 3016753 3017733 R PFAM: peptidase M56, BlaR1; KEGG: noc:Noc_0291 hypothetical protein; peptidase M56, BlaR1 complement(3016753..3017733) Shewanella frigidimarina NCIMB 400 4279431 YP_751204.1 CDS Sfri_2523 NC_008345.1 3017735 3018118 R PFAM: Penicillinase repressor; KEGG: noc:Noc_0290 penicillinase repressor; transcriptional repressor, CopY family protein complement(3017735..3018118) Shewanella frigidimarina NCIMB 400 4279432 YP_751205.1 CDS Sfri_2524 NC_008345.1 3018529 3018702 D KEGG: pha:PSHAa1267 hypothetical protein; hypothetical protein 3018529..3018702 Shewanella frigidimarina NCIMB 400 4279433 YP_751206.1 CDS Sfri_2525 NC_008345.1 3018943 3019272 D KEGG: son:SO1947 hypothetical protein; hypothetical protein 3018943..3019272 Shewanella frigidimarina NCIMB 400 4279434 YP_751207.1 CDS Sfri_2526 NC_008345.1 3019285 3019890 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ complement(3019285..3019890) Shewanella frigidimarina NCIMB 400 4279435 YP_751208.1 CDS Sfri_2527 NC_008345.1 3019890 3020927 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY complement(3019890..3020927) Shewanella frigidimarina NCIMB 400 4279436 YP_751209.1 CDS Sfri_2528 NC_008345.1 3021235 3022731 D PFAM: protein of unknown function DUF195; KEGG: son:SO2041 hypothetical protein; hypothetical protein 3021235..3022731 Shewanella frigidimarina NCIMB 400 4279437 YP_751210.1 CDS Sfri_2529 NC_008345.1 3022888 3024816 D PFAM: Lytic transglycosylase, catalytic; KEGG: son:SO2040 soluble lytic murein transglycosylase, putative; lytic transglycosylase, catalytic 3022888..3024816 Shewanella frigidimarina NCIMB 400 4279438 YP_751211.1 CDS Sfri_2530 NC_008345.1 3025235 3026146 D PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: son:SO2153 MoxR protein; ATPase 3025235..3026146 Shewanella frigidimarina NCIMB 400 4279439 YP_751212.1 CDS Sfri_2531 NC_008345.1 3026159 3027277 D PFAM: protein of unknown function DUF58; KEGG: son:SO2151 hypothetical protein; hypothetical protein 3026159..3027277 Shewanella frigidimarina NCIMB 400 4279440 YP_751213.1 CDS Sfri_2532 NC_008345.1 3027274 3029349 D PFAM: transglutaminase domain protein; KEGG: son:SO2150 transglutaminase family protein; transglutaminase domain-containing protein 3027274..3029349 Shewanella frigidimarina NCIMB 400 4279441 YP_751214.1 CDS Sfri_2533 NC_008345.1 3029453 3033265 D TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: son:SO2149 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 3029453..3033265 Shewanella frigidimarina NCIMB 400 4279442 YP_751215.1 CDS Sfri_2534 NC_008345.1 3033265 3037095 D TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: son:SO2148 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 3033265..3037095 Shewanella frigidimarina NCIMB 400 4279443 YP_751216.1 CDS Sfri_2535 NC_008345.1 3037089 3039152 D TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: son:SO2147 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 3037089..3039152 Shewanella frigidimarina NCIMB 400 4279444 YP_751217.1 CDS Sfri_2536 NC_008345.1 3039991 3040749 R KEGG: bur:Bcep18194_C6910 hypothetical protein; hypothetical protein complement(3039991..3040749) Shewanella frigidimarina NCIMB 400 4279445 YP_751218.1 CDS Sfri_2538 NC_008345.1 3041450 3042700 R hypothetical protein complement(3041450..3042700) Shewanella frigidimarina NCIMB 400 4279446 YP_751219.1 CDS Sfri_2539 NC_008345.1 3043041 3043304 R hypothetical protein complement(3043041..3043304) Shewanella frigidimarina NCIMB 400 4279447 YP_751220.1 CDS Sfri_2540 NC_008345.1 3043502 3043891 R hypothetical protein complement(3043502..3043891) Shewanella frigidimarina NCIMB 400 4279448 YP_751221.1 CDS Sfri_2541 NC_008345.1 3044167 3044388 R KEGG: pha:PSHAb0268 putative orphan protein; putative orphan protein complement(3044167..3044388) Shewanella frigidimarina NCIMB 400 4279449 YP_751222.1 CDS Sfri_2542 NC_008345.1 3044848 3046446 D PFAM: Alkaline phosphatase; KEGG: cps:CPS_3932 alkaline phosphatase family protein; alkaline phosphatase 3044848..3046446 Shewanella frigidimarina NCIMB 400 4279450 YP_751223.1 CDS Sfri_2543 NC_008345.1 3046463 3048385 D PFAM: Alkaline phosphatase; KEGG: cps:CPS_3933 alkaline phosphatase family protein; alkaline phosphatase 3046463..3048385 Shewanella frigidimarina NCIMB 400 4279451 YP_751224.1 CDS Sfri_2544 NC_008345.1 3048477 3049217 D KEGG: pha:PSHAa2975 hypothetical protein ; secreted protein; hypothetical protein 3048477..3049217 Shewanella frigidimarina NCIMB 400 4279452 YP_751225.1 CDS Sfri_2545 NC_008345.1 3049763 3050212 D KEGG: vvu:VV12469 excinuclease ATPase subunit; excinuclease ATPase subunit 3049763..3050212 Shewanella frigidimarina NCIMB 400 4279453 YP_751226.1 CDS Sfri_2546 NC_008345.1 3050341 3050688 D PFAM: protein of unknown function UPF0153; KEGG: ppr:PBPRA2316 hypothetical protein; hypothetical protein 3050341..3050688 Shewanella frigidimarina NCIMB 400 4279454 YP_751227.1 CDS Sfri_2547 NC_008345.1 3050791 3051258 R KEGG: ilo:IL2513 hypothetical protein; hypothetical protein complement(3050791..3051258) Shewanella frigidimarina NCIMB 400 4279455 YP_751228.1 CDS Sfri_2548 NC_008345.1 3051258 3052430 R PFAM: Propeptide, PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: ilo:IL2512 uncharacterized iron-regulated membrane protein; PepSY-associated TM helix domain-containing protein complement(3051258..3052430) Shewanella frigidimarina NCIMB 400 4279456 YP_751229.1 CDS Sfri_2549 NC_008345.1 3052685 3054787 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_2724 FhuE receptor; TonB-dependent siderophore receptor 3052685..3054787 Shewanella frigidimarina NCIMB 400 4279457 YP_751230.1 CDS ddl NC_008345.1 3055342 3056352 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 3055342..3056352 Shewanella frigidimarina NCIMB 400 4279458 YP_751231.1 CDS Sfri_2551 NC_008345.1 3056433 3057032 R TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: cps:CPS_1055 cytochrome c-type protein NapC; periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family protein complement(3056433..3057032) Shewanella frigidimarina NCIMB 400 4279459 YP_751232.1 CDS Sfri_2552 NC_008345.1 3057041 3057511 R PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: ppr:PBPRA2029 hypothetical periplasmic nitrate reductase small subunit precursor; nitrate reductase cytochrome c-type subunit (NapB) complement(3057041..3057511) Shewanella frigidimarina NCIMB 400 4279460 YP_751233.1 CDS Sfri_2553 NC_008345.1 3057523 3060012 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(3057523..3060012) Shewanella frigidimarina NCIMB 400 4279461 YP_751234.1 CDS Sfri_2554 NC_008345.1 3060015 3060272 R PFAM: NapD family protein; KEGG: son:SO0849 napD protein; NapD family protein complement(3060015..3060272) Shewanella frigidimarina NCIMB 400 4279462 YP_751235.1 CDS Sfri_2555 NC_008345.1 3060306 3060464 R PFAM: periplasmic nitrate reductase NapE; KEGG: cps:CPS_1060 NapE protein; periplasmic nitrate reductase NapE complement(3060306..3060464) Shewanella frigidimarina NCIMB 400 4279463 YP_751236.1 CDS Sfri_2556 NC_008345.1 3060857 3061765 R KEGG: son:SO2919 hypothetical protein; hypothetical protein complement(3060857..3061765) Shewanella frigidimarina NCIMB 400 4279464 YP_751237.1 CDS Sfri_2557 NC_008345.1 3061806 3063020 R PFAM: protein of unknown function UPF0118; KEGG: son:SO2920 hypothetical protein; hypothetical protein complement(3061806..3063020) Shewanella frigidimarina NCIMB 400 4279465 YP_751238.1 CDS folX NC_008345.1 3063179 3063547 D catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 3063179..3063547 Shewanella frigidimarina NCIMB 400 4279466 YP_751239.1 CDS Sfri_2559 NC_008345.1 3063629 3064528 D TIGRFAM: conserved hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal; domain of unknown function DUF1731; KEGG: son:SO2922 hypothetical protein; hypothetical protein 3063629..3064528 Shewanella frigidimarina NCIMB 400 4279467 YP_751240.1 CDS Sfri_2560 NC_008345.1 3064587 3065486 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0997 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(3064587..3065486) Shewanella frigidimarina NCIMB 400 4279468 YP_751241.1 CDS Sfri_2561 NC_008345.1 3065802 3066305 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO0996 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 3065802..3066305 Shewanella frigidimarina NCIMB 400 4279469 YP_751242.1 CDS Sfri_2562 NC_008345.1 3066395 3067084 R TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ppr:PBPRB1023 hypothetical ribosomal small subunit pseudouridine synthase A; pseudouridine synthase, Rsu complement(3066395..3067084) Shewanella frigidimarina NCIMB 400 4279470 YP_751243.1 CDS Sfri_2563 NC_008345.1 3067233 3068096 R KEGG: par:Psyc_1092 hypothetical protein; hypothetical protein complement(3067233..3068096) Shewanella frigidimarina NCIMB 400 4279471 YP_751244.1 CDS Sfri_2565 NC_008345.1 3068536 3068790 D KEGG: vch:VCA0343 hypothetical protein; hypothetical protein 3068536..3068790 Shewanella frigidimarina NCIMB 400 4279472 YP_751245.1 CDS Sfri_2566 NC_008345.1 3068857 3071340 R PFAM: protein of unknown function DUF214; KEGG: son:SO2926 ABC transporter, permease, putative; hypothetical protein complement(3068857..3071340) Shewanella frigidimarina NCIMB 400 4279473 YP_751246.1 CDS Sfri_2567 NC_008345.1 3071340 3072089 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2927 ABC transporter, ATP-binding protein; ABC transporter complement(3071340..3072089) Shewanella frigidimarina NCIMB 400 4279474 YP_751247.1 CDS Sfri_2568 NC_008345.1 3072121 3072708 D PFAM: lipolytic enzyme, G-D-S-L family; KEGG: son:SO2928 acyl-CoA thioesterase I, putative; arylesterase 3072121..3072708 Shewanella frigidimarina NCIMB 400 4279475 YP_751248.1 CDS Sfri_2569 NC_008345.1 3072884 3073951 D KEGG: son:SO2929 hypothetical protein; hypothetical protein 3072884..3073951 Shewanella frigidimarina NCIMB 400 4279476 YP_751249.2 CDS Sfri_2570 NC_008345.1 3074039 3075049 R SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease complement(3074039..3075049) Shewanella frigidimarina NCIMB 400 4279477 YP_751250.1 CDS Sfri_2571 NC_008345.1 3075172 3077661 R KEGG: son:SO2934 hypothetical protein; hypothetical protein complement(3075172..3077661) Shewanella frigidimarina NCIMB 400 4279478 YP_751251.1 CDS Sfri_2572 NC_008345.1 3077921 3078658 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO2935 short chain dehydrogenase; short chain dehydrogenase 3077921..3078658 Shewanella frigidimarina NCIMB 400 4279479 YP_751252.1 CDS Sfri_2573 NC_008345.1 3078748 3079086 R TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: son:SO1813 DNA-binding protein, putative; helix-hairpin-helix repeat-containing competence protein ComEA complement(3078748..3079086) Shewanella frigidimarina NCIMB 400 4279480 YP_751253.1 CDS Sfri_2574 NC_008345.1 3079227 3080318 R PFAM: conserved hypothetical protein 1620; KEGG: son:SO1811 hypothetical protein; hypothetical protein complement(3079227..3080318) Shewanella frigidimarina NCIMB 400 4279481 YP_751254.1 CDS Sfri_2575 NC_008345.1 3080354 3081796 R PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: son:SO1810 hypothetical ATPase; hypothetical protein complement(3080354..3081796) Shewanella frigidimarina NCIMB 400 4279482 YP_751255.1 CDS Sfri_2576 NC_008345.1 3081850 3082245 R PFAM: PspC domain protein; KEGG: son:SO1809 phage shock protein C; phage shock protein C, PspC complement(3081850..3082245) Shewanella frigidimarina NCIMB 400 4279483 YP_751256.1 CDS pspB NC_008345.1 3082232 3082465 R acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B complement(3082232..3082465) Shewanella frigidimarina NCIMB 400 4279484 YP_751257.1 CDS Sfri_2578 NC_008345.1 3082491 3083174 R PFAM: PspA/IM30 family protein; KEGG: son:SO1807 phage shock protein A; phage shock protein A, PspA complement(3082491..3083174) Shewanella frigidimarina NCIMB 400 4279485 YP_751258.1 CDS Sfri_2579 NC_008345.1 3083367 3084446 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO1806 psp operon transcriptional activator; sigma54 specific transcriptional regulator, Fis family protein 3083367..3084446 Shewanella frigidimarina NCIMB 400 4279486 YP_751259.1 CDS Sfri_2580 NC_008345.1 3084530 3086155 D PFAM: extracellular solute-binding protein, family 5; KEGG: son:SO1805 peptide ABC transporter, periplasmic peptide-binding protein; extracellular solute-binding protein 3084530..3086155 Shewanella frigidimarina NCIMB 400 4279487 YP_751260.1 CDS Sfri_2581 NC_008345.1 3086156 3087187 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1804 peptide ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 3086156..3087187 Shewanella frigidimarina NCIMB 400 4279488 YP_751261.1 CDS Sfri_2582 NC_008345.1 3087174 3088064 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1803 peptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3087174..3088064 Shewanella frigidimarina NCIMB 400 4279489 YP_751262.1 CDS Sfri_2583 NC_008345.1 3088068 3089075 D TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; KEGG: son:SO1802 peptide ABC transporter, ATP-binding protein; oligopeptide/dipeptide ABC transporter ATPase 3088068..3089075 Shewanella frigidimarina NCIMB 400 4279490 YP_751263.1 CDS Sfri_2584 NC_008345.1 3089056 3089841 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein; ABC transporter 3089056..3089841 Shewanella frigidimarina NCIMB 400 4279491 YP_751264.1 CDS Sfri_2585 NC_008345.1 3089947 3091149 D enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 3089947..3091149 Shewanella frigidimarina NCIMB 400 4279492 YP_751265.1 CDS Sfri_2586 NC_008345.1 3091321 3093087 R TIGRFAM: flavocytochrome c; PFAM: glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0970 fumarate reductase flavoprotein subunit precursor; flavocytochrome c complement(3091321..3093087) Shewanella frigidimarina NCIMB 400 4279493 YP_751266.1 CDS Sfri_2587 NC_008345.1 3093358 3094413 D PFAM: porin, Gram-negative type; KEGG: son:SO3896 outer membrane porin, putative; porin 3093358..3094413 Shewanella frigidimarina NCIMB 400 4279494 YP_751267.1 CDS Sfri_2588 NC_008345.1 3094626 3095507 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2561 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 3094626..3095507 Shewanella frigidimarina NCIMB 400 4279495 YP_751268.1 CDS Sfri_2589 NC_008345.1 3095604 3096836 D PFAM: protein of unknown function DUF819; KEGG: son:SO3828 hypothetical protein; hypothetical protein 3095604..3096836 Shewanella frigidimarina NCIMB 400 4279496 YP_751269.1 CDS Sfri_2590 NC_008345.1 3096964 3097869 R PFAM: transcription activator, effector binding; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: bja:blr4000 transcriptional regulatory protein; transcription activator, effector binding complement(3096964..3097869) Shewanella frigidimarina NCIMB 400 4279497 YP_751270.1 CDS Sfri_2591 NC_008345.1 3097993 3098607 R PFAM: pentapeptide repeat protein; KEGG: son:SO4064 mcbg protein, putative; pentapeptide repeat-containing protein complement(3097993..3098607) Shewanella frigidimarina NCIMB 400 4279498 YP_751271.1 CDS Sfri_2592 NC_008345.1 3098688 3100565 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1798 peptidyl-prolyl cis-trans isomerase D; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3098688..3100565) Shewanella frigidimarina NCIMB 400 4279499 YP_751272.1 CDS Sfri_2593 NC_008345.1 3100782 3101057 R PFAM: histone family protein DNA-binding protein; KEGG: son:SO1797 DNA-binding protein, HU family; histone family protein DNA-binding protein complement(3100782..3101057) Shewanella frigidimarina NCIMB 400 4279500 YP_751273.1 CDS Sfri_2594 NC_008345.1 3101319 3103670 R KEGG: son:SO1796 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La complement(3101319..3103670) Shewanella frigidimarina NCIMB 400 4279501 YP_751274.1 CDS clpX NC_008345.1 3103802 3105082 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(3103802..3105082) Shewanella frigidimarina NCIMB 400 4279502 YP_751275.1 CDS clpP NC_008345.1 3105213 3105824 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(3105213..3105824) Shewanella frigidimarina NCIMB 400 4279503 YP_751276.1 CDS tig NC_008345.1 3105915 3107219 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(3105915..3107219) Shewanella frigidimarina NCIMB 400 4279504 YP_751277.1 CDS Sfri_2598 NC_008345.1 3108228 3109082 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3108228..3109082 Shewanella frigidimarina NCIMB 400 4279505 YP_751278.1 CDS cysS NC_008345.1 3109182 3110564 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(3109182..3110564) Shewanella frigidimarina NCIMB 400 4279506 YP_751279.1 CDS Sfri_2600 NC_008345.1 3110708 3111202 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO1790 peptidyl-prolyl cis-trans isomerase B; cyclophilin type peptidyl-prolyl cis-trans isomerase 3110708..3111202 Shewanella frigidimarina NCIMB 400 4279507 YP_751280.1 CDS Sfri_2601 NC_008345.1 3111205 3111930 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 3111205..3111930 Shewanella frigidimarina NCIMB 400 4279508 YP_751281.1 CDS Sfri_2602 NC_008345.1 3111996 3112664 R PFAM: tRNA hydroxylase; KEGG: son:SO1788 tRNA-hydroxylase; tRNA hydroxylase complement(3111996..3112664) Shewanella frigidimarina NCIMB 400 4279509 YP_751282.1 CDS Sfri_2603 NC_008345.1 3112786 3114339 D KEGG: ilo:IL0684 hypothetical protein; hypothetical protein 3112786..3114339 Shewanella frigidimarina NCIMB 400 4279510 YP_751283.1 CDS Sfri_2604 NC_008345.1 3114622 3115611 R hypothetical protein complement(3114622..3115611) Shewanella frigidimarina NCIMB 400 4279511 YP_751284.1 CDS Sfri_2605 NC_008345.1 3115621 3118884 R PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain protein; KEGG: pha:PSHAa2091 type I restriction-modification system endonuclease; DEAD/DEAH box helicase motif; type III restriction enzyme, res subunit complement(3115621..3118884) Shewanella frigidimarina NCIMB 400 4279512 YP_751285.1 CDS Sfri_2606 NC_008345.1 3118894 3120039 R KEGG: bfr:BF2854 hypothetical protein; hypothetical protein complement(3118894..3120039) Shewanella frigidimarina NCIMB 400 4279513 YP_751286.1 CDS Sfri_2607 NC_008345.1 3120040 3121428 R PFAM: restriction modification system DNA specificity domain; KEGG: pha:PSHAa2093 type I restriction-modification system, S subunit; restriction modification system DNA specificity subunit complement(3120040..3121428) Shewanella frigidimarina NCIMB 400 4279514 YP_751287.1 CDS Sfri_2608 NC_008345.1 3121428 3123479 R PFAM: N-6 DNA methylase; KEGG: pha:PSHAa2094 type I restriction-modification system, M subunit; N-6 adenine-specific DNA methylase; N-6 DNA methylase complement(3121428..3123479) Shewanella frigidimarina NCIMB 400 4279515 YP_751288.1 CDS Sfri_2609 NC_008345.1 3123719 3124207 D hypothetical protein 3123719..3124207 Shewanella frigidimarina NCIMB 400 4279516 YP_751289.1 CDS Sfri_2610 NC_008345.1 3124210 3125061 D PFAM: plasmid recombination enzyme; KEGG: ana:alr9001 similar to mobilization protein; plasmid recombination enzyme 3124210..3125061 Shewanella frigidimarina NCIMB 400 4279517 YP_751290.1 CDS Sfri_2611 NC_008345.1 3125182 3125943 R PFAM: tRNA hydroxylase; KEGG: pha:PSHAa2068 tRNA-hydroxylase; tRNA hydroxylase complement(3125182..3125943) Shewanella frigidimarina NCIMB 400 4279518 YP_751291.1 CDS Sfri_2612 NC_008345.1 3125945 3127750 R PFAM: Recombinase; KEGG: pst:PSPTO2317 hypothetical protein; recombinase complement(3125945..3127750) Shewanella frigidimarina NCIMB 400 4279519 YP_751292.1 CDS Sfri_2613 NC_008345.1 3127722 3127877 R KEGG: ppr:PBPRA2472 putative tRNA-(MSA)-hydroxylase; putative tRNA-(MSA)-hydroxylase complement(3127722..3127877) Shewanella frigidimarina NCIMB 400 4279520 YP_751293.1 CDS Sfri_2614 NC_008345.1 3128237 3128833 D PFAM: protein of unknown function DUF1282; KEGG: son:SO1787 hypothetical protein; hypothetical protein 3128237..3128833 Shewanella frigidimarina NCIMB 400 4279521 YP_751294.1 CDS Sfri_2615 NC_008345.1 3128902 3130572 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(3128902..3130572) Shewanella frigidimarina NCIMB 400 4279522 YP_751295.1 CDS Sfri_2616 NC_008345.1 3130731 3133043 R TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: son:SO1784 ferrous iron transport protein B; ferrous iron transport protein B complement(3130731..3133043) Shewanella frigidimarina NCIMB 400 4279523 YP_751296.1 CDS Sfri_2617 NC_008345.1 3133036 3133275 R PFAM: FeoA family protein; KEGG: son:SO1783 ferrous iron transport protein A; FeoA family protein complement(3133036..3133275) Shewanella frigidimarina NCIMB 400 4279524 YP_751297.1 CDS Sfri_2618 NC_008345.1 3133476 3134012 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1834 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3133476..3134012) Shewanella frigidimarina NCIMB 400 4279525 YP_751298.1 CDS Sfri_2619 NC_008345.1 3134082 3134360 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1832 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3134082..3134360) Shewanella frigidimarina NCIMB 400 4279526 YP_751299.1 CDS Sfri_2620 NC_008345.1 3134454 3136283 R PFAM: protein of unknown function DUF885; KEGG: son:SO1831 hypothetical protein; hypothetical protein complement(3134454..3136283) Shewanella frigidimarina NCIMB 400 4279527 YP_751300.1 CDS Sfri_2621 NC_008345.1 3136860 3138107 R SMART: Tetratricopeptide domain protein; KEGG: son:SO1829 TPR domain protein; tetratricopeptide domain-containing protein complement(3136860..3138107) Shewanella frigidimarina NCIMB 400 4279528 YP_751301.1 CDS Sfri_2622 NC_008345.1 3138107 3138727 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO1828 TonB2 protein; TonB family protein complement(3138107..3138727) Shewanella frigidimarina NCIMB 400 4279529 YP_751302.1 CDS Sfri_2623 NC_008345.1 3138729 3139133 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO1827 TonB system transport protein ExbD2; biopolymer transport protein ExbD/TolR complement(3138729..3139133) Shewanella frigidimarina NCIMB 400 4279530 YP_751303.1 CDS Sfri_2624 NC_008345.1 3139147 3139674 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO1826 TonB system transport protein ExbB2; MotA/TolQ/ExbB proton channel complement(3139147..3139674) Shewanella frigidimarina NCIMB 400 4279531 YP_751304.1 CDS Sfri_2625 NC_008345.1 3139674 3141029 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO1825 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel complement(3139674..3141029) Shewanella frigidimarina NCIMB 400 4279532 YP_751305.1 CDS Sfri_2626 NC_008345.1 3141029 3141811 R KEGG: son:SO1824 hypothetical protein; hypothetical protein complement(3141029..3141811) Shewanella frigidimarina NCIMB 400 4279533 YP_751306.1 CDS Sfri_2627 NC_008345.1 3142196 3143155 R PFAM: Methyltransferase type 11; KEGG: pha:PSHAa1988 S-adenosyl-L-methionine-dependent methyltransferase; methyltransferase type 11 complement(3142196..3143155) Shewanella frigidimarina NCIMB 400 4279534 YP_751307.1 CDS Sfri_2628 NC_008345.1 3143255 3145861 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: vpa:VP0168 putative iron complex outermembrane recepter protein; TonB-dependent receptor complement(3143255..3145861) Shewanella frigidimarina NCIMB 400 4279535 YP_751308.1 CDS Sfri_2629 NC_008345.1 3146439 3148817 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II complement(3146439..3148817) Shewanella frigidimarina NCIMB 400 4279536 YP_751309.1 CDS dinG NC_008345.1 3148953 3151028 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 3148953..3151028 Shewanella frigidimarina NCIMB 400 4279537 YP_751310.1 CDS Sfri_2631 NC_008345.1 3151037 3151810 D PFAM: protein of unknown function DUF81; KEGG: son:SO1818 hypothetical protein; hypothetical protein 3151037..3151810 Shewanella frigidimarina NCIMB 400 4279538 YP_751311.1 CDS Sfri_2632 NC_008345.1 3151807 3152469 D KEGG: son:SO1817 primosomal replication protein N'', putative; primosomal replication protein N'' 3151807..3152469 Shewanella frigidimarina NCIMB 400 4279539 YP_751312.1 CDS Sfri_2633 NC_008345.1 3152479 3153201 D KEGG: son:SO1816 hypothetical protein; hypothetical protein 3152479..3153201 Shewanella frigidimarina NCIMB 400 4279540 YP_751313.1 CDS Sfri_2634 NC_008345.1 3153201 3154124 D PFAM: histone deacetylase superfamily; KEGG: son:SO1815 histone deacetylase/AcuC/AphA family protein; histone deacetylase superfamily protein 3153201..3154124 Shewanella frigidimarina NCIMB 400 4279541 YP_751314.1 CDS Sfri_2635 NC_008345.1 3154223 3154525 D KEGG: son:SO1814 hypothetical protein; hypothetical protein 3154223..3154525 Shewanella frigidimarina NCIMB 400 4279542 YP_751315.1 CDS Sfri_2636 NC_008345.1 3155410 3157584 D KEGG: son:SO1779 decaheme cytochrome c; decaheme cytochrome c 3155410..3157584 Shewanella frigidimarina NCIMB 400 4279543 YP_751316.1 CDS Sfri_2637 NC_008345.1 3157872 3159833 D KEGG: son:SO1778 decaheme cytochrome c; decaheme cytochrome c 3157872..3159833 Shewanella frigidimarina NCIMB 400 4279544 YP_751317.1 CDS Sfri_2638 NC_008345.1 3159931 3160920 D TIGRFAM: cytochrome C family protein; KEGG: son:SO1777 decaheme cytochrome c MtrA; cytochrome C family protein 3159931..3160920 Shewanella frigidimarina NCIMB 400 4279545 YP_751318.1 CDS Sfri_2639 NC_008345.1 3160933 3163020 D KEGG: son:SO1776 outer membrane protein precursor MtrB; outer membrane protein precursor MtrB 3160933..3163020 Shewanella frigidimarina NCIMB 400 4279546 YP_751319.1 CDS Sfri_2640 NC_008345.1 3163305 3164546 D PFAM: sugar diacid recognition domain protein; KEGG: son:SO1774 hypothetical sugar diacid utilization regulator; transcriptional regulator CdaR 3163305..3164546 Shewanella frigidimarina NCIMB 400 4279547 YP_751320.1 CDS Sfri_2641 NC_008345.1 3164676 3166034 D PFAM: Gluconate transporter; Citrate transporter; KEGG: son:SO1771 permease, GntP family; gluconate transporter 3164676..3166034 Shewanella frigidimarina NCIMB 400 4279548 YP_751321.1 CDS Sfri_2642 NC_008345.1 3166055 3167224 D PFAM: glycerate kinase; KEGG: son:SO1770 glycerate kinase; glycerate kinase 3166055..3167224 Shewanella frigidimarina NCIMB 400 4279549 YP_751322.1 CDS Sfri_2643 NC_008345.1 3167455 3169095 D PFAM: Pyridoxal-dependent decarboxylase; KEGG: son:SO1769 glutamate decarboxylase, putative; pyridoxal-dependent decarboxylase 3167455..3169095 Shewanella frigidimarina NCIMB 400 4279550 YP_751323.1 CDS Sfri_2644 NC_008345.1 3169816 3170859 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: son:SO4548 transposase, IS110 family; transposase IS116/IS110/IS902 family protein complement(3169816..3170859) Shewanella frigidimarina NCIMB 400 4279551 YP_751324.1 CDS Sfri_2645 NC_008345.1 3171108 3171365 D KEGG: vvy:VVA1570 putative integrase; hypothetical protein 3171108..3171365 Shewanella frigidimarina NCIMB 400 4279552 YP_751325.1 CDS Sfri_2646 NC_008345.1 3171384 3173051 R hypothetical protein complement(3171384..3173051) Shewanella frigidimarina NCIMB 400 4279553 YP_751326.1 CDS Sfri_2647 NC_008345.1 3174808 3175356 R KEGG: son:SO1862 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(3174808..3175356) Shewanella frigidimarina NCIMB 400 4279554 YP_751327.1 CDS uvrC NC_008345.1 3175401 3177233 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(3175401..3177233) Shewanella frigidimarina NCIMB 400 4279555 YP_751328.1 CDS Sfri_2649 NC_008345.1 3177278 3177922 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator complement(3177278..3177922) Shewanella frigidimarina NCIMB 400 4279556 YP_751329.1 CDS Sfri_2650 NC_008345.1 3178173 3178592 R PFAM: protein of unknown function UPF0047; KEGG: eca:ECA3688 hypothetical protein; hypothetical protein complement(3178173..3178592) Shewanella frigidimarina NCIMB 400 4279557 YP_751330.1 CDS Sfri_2651 NC_008345.1 3179103 3180938 R SMART: PKD domain containing protein; KEGG: vfi:VFA0516 hypothetical protein; PKD domain-containing protein complement(3179103..3180938) Shewanella frigidimarina NCIMB 400 4279558 YP_751331.1 CDS Sfri_2652 NC_008345.1 3181360 3183111 R KEGG: ppr:PBPRA1203 putative PTS system, glucose-specific IIBC; TIGRFAM: PTS system, glucose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; PTS system glucose-specific transporter subunit IIBC complement(3181360..3183111) Shewanella frigidimarina NCIMB 400 4279559 YP_751332.1 CDS Sfri_2653 NC_008345.1 3183149 3184198 R PFAM: PEP-utilizing enzyme; KEGG: pst:PSPTO0954 phosphoenolpyruvate-protein phosphotransferase,EI/HPr/EIIA components; PEP-utilizing protein complement(3183149..3184198) Shewanella frigidimarina NCIMB 400 4279560 YP_751333.1 CDS Sfri_2654 NC_008345.1 3184412 3186556 R KEGG: cps:CPS_3258 sensory box/GGDEF/GAF/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(3184412..3186556) Shewanella frigidimarina NCIMB 400 4279561 YP_751334.1 CDS Sfri_2655 NC_008345.1 3188023 3189813 D KEGG: son:SO1857 hypothetical ATP-dependent protease; ATP-dependent protease 3188023..3189813 Shewanella frigidimarina NCIMB 400 4279562 YP_751335.1 CDS Sfri_2656 NC_008345.1 3189889 3190404 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 3189889..3190404 Shewanella frigidimarina NCIMB 400 4279563 YP_751336.1 CDS Sfri_2657 NC_008345.1 3190501 3190677 R PFAM: ribosome modulation factor; KEGG: son:SO1855 ribosome modulation factor; ribosome modulation factor complement(3190501..3190677) Shewanella frigidimarina NCIMB 400 4279564 YP_751337.1 CDS Sfri_2658 NC_008345.1 3190929 3192818 R KEGG: son:SO1854 hypothetical protein; hypothetical protein complement(3190929..3192818) Shewanella frigidimarina NCIMB 400 4279565 YP_751338.1 CDS Sfri_2659 NC_008345.1 3192844 3194760 R Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase complement(3192844..3194760) Shewanella frigidimarina NCIMB 400 4279566 YP_751339.1 CDS Sfri_2660 NC_008345.1 3194762 3194998 R PFAM: glutaredoxin 2; KEGG: son:SO1852 hypothetical protein; glutaredoxin complement(3194762..3194998) Shewanella frigidimarina NCIMB 400 4279567 YP_751340.1 CDS rlmL NC_008345.1 3194985 3197123 R catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase complement(3194985..3197123) Shewanella frigidimarina NCIMB 400 4279568 YP_751341.1 CDS Sfri_2662 NC_008345.1 3198655 3199017 R PFAM: Rhodanese domain protein; KEGG: ade:Adeh_0436 rhodanese-like; rhodanese domain-containing protein complement(3198655..3199017) Shewanella frigidimarina NCIMB 400 4279569 YP_751342.1 CDS Sfri_2663 NC_008345.1 3199399 3199941 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO3075 RNA methyltransferase, TrmH family, putative; tRNA/rRNA methyltransferase SpoU complement(3199399..3199941) Shewanella frigidimarina NCIMB 400 4279570 YP_751343.1 CDS Sfri_2664 NC_008345.1 3199965 3200243 R KEGG: son:SO3076 hypothetical protein; hypothetical protein complement(3199965..3200243) Shewanella frigidimarina NCIMB 400 4279571 YP_751344.1 CDS Sfri_2665 NC_008345.1 3200247 3201398 R PFAM: ATP-NAD/AcoX kinase; KEGG: son:SO3077 hypothetical protein; ATP-NAD/AcoX kinase complement(3200247..3201398) Shewanella frigidimarina NCIMB 400 4279572 YP_751345.1 CDS Sfri_2666 NC_008345.1 3201469 3202641 R PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: son:SO3078 major facilitator family protein, putative; major facilitator transporter complement(3201469..3202641) Shewanella frigidimarina NCIMB 400 4279573 YP_751346.1 CDS Sfri_2667 NC_008345.1 3202641 3203735 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(3202641..3203735) Shewanella frigidimarina NCIMB 400 4279574 YP_751347.1 CDS Sfri_2668 NC_008345.1 3203792 3204736 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(3203792..3204736) Shewanella frigidimarina NCIMB 400 4279575 YP_751348.1 CDS Sfri_2669 NC_008345.1 3204816 3205343 D PFAM: Smr protein/MutS2; KEGG: son:SO3081 Smr domain protein; hypothetical protein 3204816..3205343 Shewanella frigidimarina NCIMB 400 4279576 YP_751349.1 CDS Sfri_2670 NC_008345.1 3205436 3205909 R TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: son:SO3082 phosphohistidine phosphatase SixA; phosphohistidine phosphatase, SixA complement(3205436..3205909) Shewanella frigidimarina NCIMB 400 4279577 YP_751350.1 CDS Sfri_2671 NC_008345.1 3206098 3208887 D PFAM: peptidase M16 domain protein; KEGG: son:SO3083 peptidase, M16 family; peptidase M16 domain-containing protein 3206098..3208887 Shewanella frigidimarina NCIMB 400 4279578 YP_751351.1 CDS Sfri_2672 NC_008345.1 3209135 3213490 D KEGG: son:SO3084 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 3209135..3213490 Shewanella frigidimarina NCIMB 400 4279579 YP_751352.1 CDS Sfri_2673 NC_008345.1 3213513 3214394 D KEGG: hsa:176 aggrecan 1 (chondroitin sulfate proteoglycan 1, large aggregating proteoglycan, antigen identified by monoclonal antibody A0122); hypothetical protein 3213513..3214394 Shewanella frigidimarina NCIMB 400 4279580 YP_751353.1 CDS Sfri_4067 NC_008345.1 3214405 3214521 D hypothetical protein 3214405..3214521 Shewanella frigidimarina NCIMB 400 4280958 YP_751354.1 CDS Sfri_2675 NC_008345.1 3214631 3214843 R KEGG: sdn:Sden_1531 hypothetical protein; hypothetical protein complement(3214631..3214843) Shewanella frigidimarina NCIMB 400 4279581 YP_751355.1 CDS fadJ NC_008345.1 3215158 3217290 R multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha complement(3215158..3217290) Shewanella frigidimarina NCIMB 400 4279582 YP_751356.1 CDS fadI NC_008345.1 3217290 3218600 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase complement(3217290..3218600) Shewanella frigidimarina NCIMB 400 4279583 YP_751357.1 CDS Sfri_2678 NC_008345.1 3218850 3219806 D PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: son:SO3090 MoxR domain protein; ATPase 3218850..3219806 Shewanella frigidimarina NCIMB 400 4279584 YP_751358.1 CDS Sfri_2679 NC_008345.1 3219848 3220783 D PFAM: protein of unknown function DUF58; KEGG: son:SO3091 hypothetical protein; hypothetical protein 3219848..3220783 Shewanella frigidimarina NCIMB 400 4279585 YP_751359.1 CDS Sfri_2680 NC_008345.1 3220784 3221332 D KEGG: son:SO3092 hypothetical protein; hypothetical protein 3220784..3221332 Shewanella frigidimarina NCIMB 400 4279586 YP_751360.1 CDS Sfri_2681 NC_008345.1 3221326 3222330 D PFAM: von Willebrand factor, type A; KEGG: son:SO3093 von Willebrand factor type A domain protein; von Willebrand factor, type A 3221326..3222330 Shewanella frigidimarina NCIMB 400 4279587 YP_751361.1 CDS Sfri_2682 NC_008345.1 3222330 3224435 D PFAM: TPR repeat-containing protein; von Willebrand factor, type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO3094 TPR domain protein; hypothetical protein 3222330..3224435 Shewanella frigidimarina NCIMB 400 4279588 YP_751362.1 CDS Sfri_2683 NC_008345.1 3224429 3226063 D KEGG: son:SO3095 hypothetical protein; hypothetical protein 3224429..3226063 Shewanella frigidimarina NCIMB 400 4279589 YP_751363.1 CDS Sfri_2684 NC_008345.1 3226165 3226728 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 3226165..3226728 Shewanella frigidimarina NCIMB 400 4279590 YP_751364.1 CDS Sfri_2685 NC_008345.1 3226721 3227428 D KEGG: son:SO3097 hypothetical protein; hypothetical protein 3226721..3227428 Shewanella frigidimarina NCIMB 400 4279591 YP_751365.1 CDS Sfri_2686 NC_008345.1 3227563 3229023 D TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: bha:BH0660 sodium/proline symporter; sodium/proline symporter 3227563..3229023 Shewanella frigidimarina NCIMB 400 4279592 YP_751366.1 CDS Sfri_2687 NC_008345.1 3229445 3230728 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO3099 long-chain fatty acid transport protein, putative; aromatic hydrocarbon degradation membrane protein 3229445..3230728 Shewanella frigidimarina NCIMB 400 4279593 YP_751367.1 CDS Sfri_2688 NC_008345.1 3230929 3231990 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3102 AcrA/AcrE family protein; RND family efflux transporter MFP subunit 3230929..3231990 Shewanella frigidimarina NCIMB 400 4279594 YP_751368.1 CDS Sfri_2689 NC_008345.1 3231996 3235256 D PFAM: acriflavin resistance protein; KEGG: son:SO3103 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 3231996..3235256 Shewanella frigidimarina NCIMB 400 4279595 YP_751369.1 CDS Sfri_2690 NC_008345.1 3235301 3235513 D KEGG: son:SO3104 hypothetical protein; hypothetical protein 3235301..3235513 Shewanella frigidimarina NCIMB 400 4279596 YP_751370.1 CDS Sfri_2691 NC_008345.1 3235527 3235904 D PFAM: Rhodanese domain protein; KEGG: son:SO3105 phage shock protein E; rhodanese domain-containing protein 3235527..3235904 Shewanella frigidimarina NCIMB 400 4279597 YP_751371.1 CDS Sfri_2692 NC_008345.1 3236368 3238824 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: son:SO3106 cold-active serine alkaline protease; peptidase S8/S53 subtilisin kexin sedolisin 3236368..3238824 Shewanella frigidimarina NCIMB 400 4279598 YP_751372.1 CDS Sfri_2693 NC_008345.1 3238906 3239553 R PFAM: CBS domain containing protein; KEGG: cps:CPS_1349 CBS domain protein; hypothetical protein complement(3238906..3239553) Shewanella frigidimarina NCIMB 400 4279599 YP_751373.1 CDS Sfri_2694 NC_008345.1 3239741 3240277 R PFAM: YaeQ family protein; KEGG: son:SO3107 hypothetical protein; YaeQ family protein complement(3239741..3240277) Shewanella frigidimarina NCIMB 400 4279600 YP_751374.1 CDS Sfri_2695 NC_008345.1 3240357 3241268 R TIGRFAM: siroheme synthase; KEGG: son:SO3108 precorrin-2 oxidase / ferrochelatase; siroheme synthase complement(3240357..3241268) Shewanella frigidimarina NCIMB 400 4279601 YP_751375.1 CDS Sfri_2696 NC_008345.1 3241277 3241636 R PFAM: Rhodanese domain protein; KEGG: cya:CYA_1705 rhodanese domain protein; rhodanese domain-containing protein complement(3241277..3241636) Shewanella frigidimarina NCIMB 400 4279602 YP_751376.1 CDS Sfri_2697 NC_008345.1 3242024 3242344 R KEGG: son:SO3109 hypothetical protein; hypothetical protein complement(3242024..3242344) Shewanella frigidimarina NCIMB 400 4279603 YP_751377.1 CDS Sfri_2698 NC_008345.1 3242551 3242952 D KEGG: sde:Sde_2410 hypothetical protein; hypothetical protein 3242551..3242952 Shewanella frigidimarina NCIMB 400 4279604 YP_751378.1 CDS secF NC_008345.1 3243220 3244167 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(3243220..3244167) Shewanella frigidimarina NCIMB 400 4279605 YP_751379.1 CDS secD NC_008345.1 3244182 3246032 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(3244182..3246032) Shewanella frigidimarina NCIMB 400 4279606 YP_751380.1 CDS yajC NC_008345.1 3246050 3246382 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(3246050..3246382) Shewanella frigidimarina NCIMB 400 4279607 YP_751381.1 CDS tgt NC_008345.1 3246408 3247532 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(3246408..3247532) Shewanella frigidimarina NCIMB 400 4279608 YP_751382.1 CDS queA NC_008345.1 3247675 3248715 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(3247675..3248715) Shewanella frigidimarina NCIMB 400 4279609 YP_751383.1 CDS Sfri_2704 NC_008345.1 3249167 3249763 D PFAM: protein of unknown function DUF479; KEGG: son:SO3116 hypothetical protein; hypothetical protein 3249167..3249763 Shewanella frigidimarina NCIMB 400 4279610 YP_751384.1 CDS Sfri_2705 NC_008345.1 3249793 3250374 D PFAM: Redoxin domain protein; KEGG: son:SO3117 thioredoxin, putative; redoxin domain-containing protein 3249793..3250374 Shewanella frigidimarina NCIMB 400 4279611 YP_751385.1 CDS Sfri_2706 NC_008345.1 3250526 3251179 D PFAM: pseudouridine synthase; KEGG: hch:HCH_04661 pseudouridylate synthases, 23S RNA-specific; pseudouridine synthase 3250526..3251179 Shewanella frigidimarina NCIMB 400 4279612 YP_751386.1 CDS Sfri_2707 NC_008345.1 3251637 3252878 R involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT complement(3251637..3252878) Shewanella frigidimarina NCIMB 400 4279613 YP_751387.1 CDS Sfri_2708 NC_008345.1 3253383 3254285 R PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO3123 chemotaxis protein CheV; response regulator receiver modulated CheW protein complement(3253383..3254285) Shewanella frigidimarina NCIMB 400 4279614 YP_751388.1 CDS Sfri_2709 NC_008345.1 3254784 3255263 R SMART: protein tyrosine phosphatase, catalytic region; KEGG: son:SO3124 tyrosine-specific protein phosphatase, putative; dual specificity protein phosphatase complement(3254784..3255263) Shewanella frigidimarina NCIMB 400 4279615 YP_751389.1 CDS Sfri_2710 NC_008345.1 3255275 3256561 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: ppr:PBPRB0199 putative ATP-dependent RNA helicase; DEAD/DEAH box helicase complement(3255275..3256561) Shewanella frigidimarina NCIMB 400 4279616 YP_751390.1 CDS Sfri_2711 NC_008345.1 3256634 3257185 R KEGG: son:SO3126 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(3256634..3257185) Shewanella frigidimarina NCIMB 400 4279617 YP_751391.1 CDS Sfri_2712 NC_008345.1 3257190 3258725 R PFAM: helix-turn-helix- domain containing protein, AraC type; Ada, metal-binding domain protein; AlkA domain protein; SMART: HhH-GPD family protein; KEGG: son:SO3127 Ada regulatory protein, putative; AraC family transcriptional regulator complement(3257190..3258725) Shewanella frigidimarina NCIMB 400 4279618 YP_751392.1 CDS Sfri_2713 NC_008345.1 3258938 3260767 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3128 ABC transporter, ATP-binding/permease protein, putative; ABC transporter 3258938..3260767 Shewanella frigidimarina NCIMB 400 4279619 YP_751393.1 CDS gltX NC_008345.1 3261885 3263294 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 3261885..3263294 Shewanella frigidimarina NCIMB 400 4279620 YP_751394.1 CDS Sfri_2715 NC_008345.1 3265560 3266579 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: son:SO3134 C4-dicarboxylate-binding periplasmic protein; TRAP dicarboxylate transporter, DctP subunit 3265560..3266579 Shewanella frigidimarina NCIMB 400 4279621 YP_751395.1 CDS Sfri_2716 NC_008345.1 3266603 3267304 D PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: son:SO3135 C4-dicarboxylate transporter, putative; tripartite ATP-independent periplasmic transporter DctQ 3266603..3267304 Shewanella frigidimarina NCIMB 400 4279622 YP_751396.1 CDS Sfri_2717 NC_008345.1 3267304 3268701 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO3136 C4-dicarboxylate transport protein; TRAP dicarboxylate transporter, DctM subunit 3267304..3268701 Shewanella frigidimarina NCIMB 400 4279623 YP_751397.1 CDS Sfri_2718 NC_008345.1 3268802 3270598 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3136.1 hypothetical two-component sensor histidine kinase protein; periplasmic sensor signal transduction histidine kinase 3268802..3270598 Shewanella frigidimarina NCIMB 400 4279624 YP_751398.1 CDS Sfri_2719 NC_008345.1 3270601 3271974 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3138 C4-dicarboxylate transport transcriptional regulatory protein; Fis family two component sigma-54-specific transcriptional regulator 3270601..3271974 Shewanella frigidimarina NCIMB 400 4279625 YP_751399.1 CDS Sfri_2720 NC_008345.1 3271971 3273206 R PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1917 multidrug resistance protein, putative; major facilitator transporter complement(3271971..3273206) Shewanella frigidimarina NCIMB 400 4279626 YP_751400.1 CDS Sfri_2721 NC_008345.1 3273309 3273710 R KEGG: son:SO1913 hypothetical protein; hypothetical protein complement(3273309..3273710) Shewanella frigidimarina NCIMB 400 4279627 YP_751401.1 CDS Sfri_2722 NC_008345.1 3273720 3274580 R KEGG: son:SO1912 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II complement(3273720..3274580) Shewanella frigidimarina NCIMB 400 4279628 YP_751402.1 CDS Sfri_2723 NC_008345.1 3274788 3275681 D TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: son:SO1910 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 3274788..3275681 Shewanella frigidimarina NCIMB 400 4279629 YP_751403.1 CDS Sfri_2724 NC_008345.1 3275752 3277281 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(3275752..3277281) Shewanella frigidimarina NCIMB 400 4279630 YP_751404.1 CDS Sfri_2725 NC_008345.1 3277535 3279451 R PFAM: AMP-dependent synthetase and ligase; KEGG: mag:amb2304 acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; AMP-dependent synthetase and ligase complement(3277535..3279451) Shewanella frigidimarina NCIMB 400 4279631 YP_751405.1 CDS Sfri_2726 NC_008345.1 3279770 3280180 D PFAM: regulatory protein, MerR; KEGG: son:SO1898 transcriptional regulator, putative; transcriptional regulator, MerR family protein 3279770..3280180 Shewanella frigidimarina NCIMB 400 4279632 YP_751406.1 CDS Sfri_2727 NC_008345.1 3280306 3281475 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO1897 isovaleryl-CoA dehydrogenase; isovaleryl-CoA dehydrogenase 3280306..3281475 Shewanella frigidimarina NCIMB 400 4279633 YP_751407.1 CDS Sfri_2728 NC_008345.1 3281564 3283171 D PFAM: carboxyl transferase; KEGG: son:SO1896 3-methylcrotonyl-CoA carboxylase beta subunit; propionyl-CoA carboxylase 3281564..3283171 Shewanella frigidimarina NCIMB 400 4279634 YP_751408.1 CDS Sfri_2729 NC_008345.1 3283210 3284022 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO1895 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 3283210..3284022 Shewanella frigidimarina NCIMB 400 4279635 YP_751409.1 CDS Sfri_2730 NC_008345.1 3284025 3286055 D PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO1894 3-methylcrotonyl-CoA carboxylase alpha subunit; carbamoyl-phosphate synthase subunit L 3284025..3286055 Shewanella frigidimarina NCIMB 400 4279636 YP_751410.1 CDS Sfri_2731 NC_008345.1 3286056 3286946 D PFAM: pyruvate carboxyltransferase; KEGG: son:SO1893 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase 3286056..3286946 Shewanella frigidimarina NCIMB 400 4279637 YP_751411.1 CDS Sfri_2732 NC_008345.1 3287013 3287717 D KEGG: son:SO1892 acetate CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 3287013..3287717 Shewanella frigidimarina NCIMB 400 4279638 YP_751412.1 CDS Sfri_2733 NC_008345.1 3287731 3288387 D KEGG: son:SO1891 3-oxoacid CoA-transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 3287731..3288387 Shewanella frigidimarina NCIMB 400 4279639 YP_751413.1 CDS Sfri_2734 NC_008345.1 3288526 3289407 R KEGG: son:SO2355 universal stress protein family; hypothetical protein complement(3288526..3289407) Shewanella frigidimarina NCIMB 400 4279640 YP_751414.1 CDS Sfri_2735 NC_008345.1 3290639 3291190 D PFAM: cation antiporter; KEGG: noc:Noc_1287 cation antiporter; cation antiporter 3290639..3291190 Shewanella frigidimarina NCIMB 400 4279641 YP_751415.1 CDS Sfri_2736 NC_008345.1 3291369 3291647 D KEGG: noc:Noc_1286 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 3291369..3291647 Shewanella frigidimarina NCIMB 400 4279642 YP_751416.1 CDS Sfri_2737 NC_008345.1 3291634 3291933 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 3291634..3291933 Shewanella frigidimarina NCIMB 400 4279643 YP_751417.1 CDS Sfri_2738 NC_008345.1 3291921 3292253 D KEGG: noc:Noc_1284 hypothetical protein; hypothetical protein 3291921..3292253 Shewanella frigidimarina NCIMB 400 4279644 YP_751418.1 CDS Sfri_2739 NC_008345.1 3292427 3293083 D KEGG: bja:blr7318 hypothetical protein; hypothetical protein 3292427..3293083 Shewanella frigidimarina NCIMB 400 4279645 YP_751419.1 CDS Sfri_2740 NC_008345.1 3293083 3293391 D PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: noc:Noc_1282 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase, chain 4L 3293083..3293391 Shewanella frigidimarina NCIMB 400 4279646 YP_751420.1 CDS Sfri_2741 NC_008345.1 3293681 3295129 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1281 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 3293681..3295129 Shewanella frigidimarina NCIMB 400 4279647 YP_751421.1 CDS Sfri_2742 NC_008345.1 3295126 3296619 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1280 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 3295126..3296619 Shewanella frigidimarina NCIMB 400 4279648 YP_751422.1 CDS Sfri_2743 NC_008345.1 3296619 3297920 D KEGG: noc:Noc_1279 NADH/ubiquinone/plastoquinone (complex I); formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter MnhD subunit-like protein 3296619..3297920 Shewanella frigidimarina NCIMB 400 4279649 YP_751423.1 CDS Sfri_2744 NC_008345.1 3298451 3300241 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: son:SO2768 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 3298451..3300241 Shewanella frigidimarina NCIMB 400 4279650 YP_751424.1 CDS Sfri_2745 NC_008345.1 3300316 3300894 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(3300316..3300894) Shewanella frigidimarina NCIMB 400 4279651 YP_751425.1 CDS Sfri_2746 NC_008345.1 3301054 3302610 R PFAM: Na+/H+ antiporter NhaC; KEGG: vfi:VF1630 Na(+)/H(+) antiporter; Na+/H+ antiporter NhaC complement(3301054..3302610) Shewanella frigidimarina NCIMB 400 4279652 YP_751426.1 CDS Sfri_2747 NC_008345.1 3303312 3304235 R PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: son:SO3144 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha complement(3303312..3304235) Shewanella frigidimarina NCIMB 400 4279653 YP_751427.1 CDS Sfri_2748 NC_008345.1 3304237 3304986 R PFAM: electron transfer flavoprotein beta-subunit; KEGG: son:SO3145 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein subunit beta complement(3304237..3304986) Shewanella frigidimarina NCIMB 400 4279654 YP_751428.1 CDS Sfri_2749 NC_008345.1 3305422 3305832 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: son:SO3146 DNA-binding protein, H-NS family; histone family protein nucleoid-structuring protein H-NS 3305422..3305832 Shewanella frigidimarina NCIMB 400 4279655 YP_751429.1 CDS Sfri_2750 NC_008345.1 3305995 3306390 D KEGG: son:SO3150 lipoprotein, putative; putative lipoprotein 3305995..3306390 Shewanella frigidimarina NCIMB 400 4279656 YP_751430.1 CDS Sfri_2751 NC_008345.1 3306504 3307292 D PFAM: protein of unknown function UPF0066; KEGG: son:SO3151 hypothetical protein; hypothetical protein 3306504..3307292 Shewanella frigidimarina NCIMB 400 4279657 YP_751431.1 CDS Sfri_2752 NC_008345.1 3307297 3307911 D PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO3152 acetyltransferase, CysE/LacA/LpxA/NodL family; hexapaptide repeat-containing transferase 3307297..3307911 Shewanella frigidimarina NCIMB 400 4279658 YP_751432.1 CDS Sfri_2753 NC_008345.1 3308026 3309741 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3308026..3309741 Shewanella frigidimarina NCIMB 400 4279659 YP_751433.1 CDS Sfri_2754 NC_008345.1 3309807 3311207 R PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3162 sensor histidine kinase; GAF sensor signal transduction histidine kinase complement(3309807..3311207) Shewanella frigidimarina NCIMB 400 4279660 YP_751434.1 CDS Sfri_2755 NC_008345.1 3311182 3312744 R PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: vvu:VV20465 response regulator; response regulator receiver modulated metal dependent phosphohydrolase complement(3311182..3312744) Shewanella frigidimarina NCIMB 400 4279661 YP_751435.1 CDS Sfri_2756 NC_008345.1 3313102 3314235 D PFAM: Patatin; KEGG: son:SO3155 hypothetical protein; patatin 3313102..3314235 Shewanella frigidimarina NCIMB 400 4279662 YP_751436.1 CDS Sfri_2757 NC_008345.1 3314537 3314968 D KEGG: son:SO3163 lipoprotein; hypothetical protein 3314537..3314968 Shewanella frigidimarina NCIMB 400 4279663 YP_751437.1 CDS Sfri_2758 NC_008345.1 3315042 3315929 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cvi:CV4012 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 3315042..3315929 Shewanella frigidimarina NCIMB 400 4279664 YP_751438.1 CDS Sfri_2759 NC_008345.1 3315916 3316485 D KEGG: son:SO3160 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 3315916..3316485 Shewanella frigidimarina NCIMB 400 4279665 YP_751439.1 CDS Sfri_2760 NC_008345.1 3316482 3317513 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO3167 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 3316482..3317513 Shewanella frigidimarina NCIMB 400 4279666 YP_751440.1 CDS Sfri_2761 NC_008345.1 3317510 3318412 D PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: syf:Synpcc7942_2099 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 3317510..3318412 Shewanella frigidimarina NCIMB 400 4279667 YP_751441.1 CDS Sfri_2762 NC_008345.1 3318558 3318728 D KEGG: son:SO1572 hypothetical protein; hypothetical protein 3318558..3318728 Shewanella frigidimarina NCIMB 400 4279668 YP_751442.1 CDS Sfri_2763 NC_008345.1 3318883 3320280 R PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO1565 magnesium transporter, putative; MgtE integral membrane protein complement(3318883..3320280) Shewanella frigidimarina NCIMB 400 4279669 YP_751443.1 CDS Sfri_2764 NC_008345.1 3320431 3320916 D PFAM: glutathione peroxidase; KEGG: son:SO1563 glutathione peroxidase; glutathione peroxidase 3320431..3320916 Shewanella frigidimarina NCIMB 400 4279670 YP_751444.1 CDS Sfri_2765 NC_008345.1 3323277 3325058 R PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1561 peptidase, M1 family; peptidase M1, membrane alanine aminopeptidase complement(3323277..3325058) Shewanella frigidimarina NCIMB 400 4279671 YP_751445.1 CDS Sfri_2766 NC_008345.1 3325621 3326592 R TIGRFAM: phosphate binding protein; KEGG: son:SO1560 phosphate-binding protein; phosphate binding protein complement(3325621..3326592) Shewanella frigidimarina NCIMB 400 4279672 YP_751446.1 CDS Sfri_2767 NC_008345.1 3327068 3328363 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: son:SO1559 phosphate regulon sensor protein PhoR; PAS/PAC sensor signal transduction histidine kinase complement(3327068..3328363) Shewanella frigidimarina NCIMB 400 4279673 YP_751447.1 CDS Sfri_2768 NC_008345.1 3328540 3329229 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1558 phosphate regulon response regulator PhoB; two component transcriptional regulator, winged helix family protein complement(3328540..3329229) Shewanella frigidimarina NCIMB 400 4279674 YP_751448.1 CDS Sfri_2769 NC_008345.1 3329800 3330744 R PFAM: porin, Gram-negative type; KEGG: son:SO1557 outer membrane porin, putative; porin complement(3329800..3330744) Shewanella frigidimarina NCIMB 400 4279675 YP_751449.1 CDS rdgC NC_008345.1 3331061 3331972 D Required for efficient pilin antigenic variation; recombination associated protein 3331061..3331972 Shewanella frigidimarina NCIMB 400 4279676 YP_751450.1 CDS Sfri_2771 NC_008345.1 3331990 3332547 D PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: ilo:IL2586 glutathione S-transferase related protein; glutathione S-transferase domain-containing protein 3331990..3332547 Shewanella frigidimarina NCIMB 400 4279677 YP_751451.1 CDS Sfri_2772 NC_008345.1 3332638 3334464 R PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: pha:PSHAb0471 hypothetical protein; peptidase M61 domain-containing protein complement(3332638..3334464) Shewanella frigidimarina NCIMB 400 4279678 YP_751452.1 CDS Sfri_2773 NC_008345.1 3334666 3336822 D PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO1552 TPR domain protein; TPR repeat-containing protein 3334666..3336822 Shewanella frigidimarina NCIMB 400 4279679 YP_751453.1 CDS Sfri_2774 NC_008345.1 3336988 3338580 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1551 GGDEF domain protein; diguanylate cyclase 3336988..3338580 Shewanella frigidimarina NCIMB 400 4279680 YP_751454.1 CDS Sfri_2775 NC_008345.1 3338643 3340007 D PFAM: conserved hypothetical protein 730; KEGG: son:SO1550 hypothetical protein; hypothetical protein 3338643..3340007 Shewanella frigidimarina NCIMB 400 4279681 YP_751455.1 CDS xni NC_008345.1 3340000 3340767 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3340000..3340767 Shewanella frigidimarina NCIMB 400 4279682 YP_751456.1 CDS Sfri_2777 NC_008345.1 3341015 3341413 D KEGG: son:SO1548 hypothetical protein; hypothetical protein 3341015..3341413 Shewanella frigidimarina NCIMB 400 4279683 YP_751457.1 CDS Sfri_2778 NC_008345.1 3341509 3344376 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1539 hypothetical protein; peptidase S9 prolyl oligopeptidase complement(3341509..3344376) Shewanella frigidimarina NCIMB 400 4279684 YP_751458.1 CDS Sfri_2779 NC_008345.1 3344816 3345826 D catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 3344816..3345826 Shewanella frigidimarina NCIMB 400 4279685 YP_751459.1 CDS Sfri_2780 NC_008345.1 3345929 3347017 R KEGG: son:SO1536 hypothetical protein; putative RNA 2'-O-ribose methyltransferase complement(3345929..3347017) Shewanella frigidimarina NCIMB 400 4279686 YP_751460.1 CDS Sfri_2781 NC_008345.1 3347114 3347494 R PFAM: protein of unknown function DUF423; KEGG: son:SO1535 hypothetical protein; hypothetical protein complement(3347114..3347494) Shewanella frigidimarina NCIMB 400 4279687 YP_751461.1 CDS Sfri_2782 NC_008345.1 3347670 3348380 R KEGG: son:SO1534 hypothetical protein; hypothetical protein complement(3347670..3348380) Shewanella frigidimarina NCIMB 400 4279688 YP_751462.1 CDS Sfri_2783 NC_008345.1 3348361 3349272 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(3348361..3349272) Shewanella frigidimarina NCIMB 400 4279689 YP_751463.1 CDS Sfri_2784 NC_008345.1 3349452 3349676 D hypothetical protein 3349452..3349676 Shewanella frigidimarina NCIMB 400 4279690 YP_751464.1 CDS Sfri_2785 NC_008345.1 3349868 3351322 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(3349868..3351322) Shewanella frigidimarina NCIMB 400 4279691 YP_751465.1 CDS motB NC_008345.1 3351685 3352611 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB complement(3351685..3352611) Shewanella frigidimarina NCIMB 400 4279692 YP_751466.1 CDS Sfri_2787 NC_008345.1 3352615 3353382 R Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA complement(3352615..3353382) Shewanella frigidimarina NCIMB 400 4279693 YP_751467.1 CDS Sfri_2788 NC_008345.1 3353722 3353958 D TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: vvy:VV0870 exonuclease VII small subunit; exodeoxyribonuclease VII small subunit 3353722..3353958 Shewanella frigidimarina NCIMB 400 4279694 YP_751468.1 CDS Sfri_2789 NC_008345.1 3353998 3354879 D PFAM: Polyprenyl synthetase; KEGG: son:SO1526 geranyltranstransferase; polyprenyl synthetase 3353998..3354879 Shewanella frigidimarina NCIMB 400 4279695 YP_751469.1 CDS Sfri_2790 NC_008345.1 3354902 3356767 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3354902..3356767 Shewanella frigidimarina NCIMB 400 4279696 YP_751470.1 CDS Sfri_2791 NC_008345.1 3356950 3357555 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(3356950..3357555) Shewanella frigidimarina NCIMB 400 4279697 YP_751471.1 CDS ppnK NC_008345.1 3357668 3358597 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3357668..3358597 Shewanella frigidimarina NCIMB 400 4279698 YP_751472.1 CDS Sfri_2793 NC_008345.1 3358928 3360580 D PFAM: L-lactate permease; KEGG: son:SO1522 L-lactate permease, putative; L-lactate permease 3358928..3360580 Shewanella frigidimarina NCIMB 400 4279699 YP_751473.1 CDS Sfri_2794 NC_008345.1 3360672 3363476 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: son:SO1521 iron-sulfur cluster-binding protein; FAD linked oxidase domain-containing protein 3360672..3363476 Shewanella frigidimarina NCIMB 400 4279700 YP_751474.1 CDS Sfri_2795 NC_008345.1 3363660 3364748 R PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: son:SO1502 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein, P47K complement(3363660..3364748) Shewanella frigidimarina NCIMB 400 4279701 YP_751475.1 CDS Sfri_2796 NC_008345.1 3364745 3366016 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1501 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase complement(3364745..3366016) Shewanella frigidimarina NCIMB 400 4279702 YP_751476.1 CDS Sfri_2797 NC_008345.1 3366158 3369220 R KEGG: son:SO1500 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type, transmembrane region; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(3366158..3369220) Shewanella frigidimarina NCIMB 400 4279703 YP_751477.1 CDS Sfri_2798 NC_008345.1 3369624 3370772 D PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO1490 alcohol dehydrogenase II; iron-containing alcohol dehydrogenase 3369624..3370772 Shewanella frigidimarina NCIMB 400 4279704 YP_751478.1 CDS Sfri_2799 NC_008345.1 3371041 3371406 D KEGG: son:SO1489 hypothetical protein; hypothetical protein 3371041..3371406 Shewanella frigidimarina NCIMB 400 4279705 YP_751479.1 CDS Sfri_2800 NC_008345.1 3371547 3371915 R PFAM: thioesterase superfamily protein; KEGG: son:SO1486 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein complement(3371547..3371915) Shewanella frigidimarina NCIMB 400 4279706 YP_751480.1 CDS Sfri_2801 NC_008345.1 3372152 3373162 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO3338 L-allo-threonine aldolase; threonine aldolase complement(3372152..3373162) Shewanella frigidimarina NCIMB 400 4279707 YP_751481.1 CDS Sfri_2802 NC_008345.1 3373209 3373802 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO3341 antioxidant, AhpC/TSA family; redoxin domain-containing protein complement(3373209..3373802) Shewanella frigidimarina NCIMB 400 4279708 YP_751482.1 CDS Sfri_2803 NC_008345.1 3373869 3374702 R PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO3340 hypothetical small-conductance mechanosensitive channel; MscS mechanosensitive ion channel complement(3373869..3374702) Shewanella frigidimarina NCIMB 400 4279709 YP_751483.1 CDS Sfri_2804 NC_008345.1 3374728 3375375 R PFAM: OmpA/MotB domain protein; KEGG: son:SO3339 OmpA family protein; OmpA/MotB domain-containing protein complement(3374728..3375375) Shewanella frigidimarina NCIMB 400 4279710 YP_751484.1 CDS Sfri_2806 NC_008345.1 3377799 3378920 R PFAM: response regulator receiver; KEGG: son:SO3196 response regulator; response regulator receiver protein complement(3377799..3378920) Shewanella frigidimarina NCIMB 400 4279711 YP_751485.1 CDS Sfri_2807 NC_008345.1 3378967 3379746 R PFAM: VacJ family lipoprotein; KEGG: son:SO3197 vacJ lipoprotein, putative; VacJ family lipoprotein complement(3378967..3379746) Shewanella frigidimarina NCIMB 400 4279712 YP_751486.1 CDS Sfri_2808 NC_008345.1 3380090 3382219 D KEGG: son:SO3198 hypothetical protein; hypothetical protein 3380090..3382219 Shewanella frigidimarina NCIMB 400 4279713 YP_751487.1 CDS Sfri_2809 NC_008345.1 3382228 3382542 D KEGG: son:SO3199 FlhB domain protein; FlhB domain-containing protein 3382228..3382542 Shewanella frigidimarina NCIMB 400 4279714 YP_751488.1 CDS Sfri_2810 NC_008345.1 3382585 3382926 R hypothetical protein complement(3382585..3382926) Shewanella frigidimarina NCIMB 400 4279715 YP_751489.1 CDS Sfri_2811 NC_008345.1 3383712 3384680 D KEGG: son:SO2736 hypothetical protein; hypothetical protein 3383712..3384680 Shewanella frigidimarina NCIMB 400 4279716 YP_751490.1 CDS Sfri_2812 NC_008345.1 3384823 3385770 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: cvi:CV3504 probable two-component response regulator; diguanylate cyclase complement(3384823..3385770) Shewanella frigidimarina NCIMB 400 4279717 YP_751491.1 CDS Sfri_2813 NC_008345.1 3385774 3390672 R KEGG: cvi:CV1621 probable sensor/response regulatory hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase complement(3385774..3390672) Shewanella frigidimarina NCIMB 400 4279718 YP_751492.1 CDS Sfri_2814 NC_008345.1 3391219 3392361 R KEGG: ava:Ava_4197 hypothetical protein; hypothetical protein complement(3391219..3392361) Shewanella frigidimarina NCIMB 400 4279719 YP_751493.1 CDS Sfri_2815 NC_008345.1 3392373 3393017 R PFAM: Redoxin domain protein; KEGG: pha:PSHAa1831 AhpC-TSA; redoxin domain-containing protein complement(3392373..3393017) Shewanella frigidimarina NCIMB 400 4279720 YP_751494.1 CDS Sfri_2816 NC_008345.1 3393145 3393711 D PFAM: regulatory protein, TetR; KEGG: rba:RB4571 hypothetical protein; transcriptional regulator, TetR family protein 3393145..3393711 Shewanella frigidimarina NCIMB 400 4279721 YP_751495.1 CDS Sfri_2817 NC_008345.1 3394154 3396622 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: pha:PSHAa0132 hydrolase; peptidase S9 prolyl oligopeptidase complement(3394154..3396622) Shewanella frigidimarina NCIMB 400 4279722 YP_751496.1 CDS Sfri_2818 NC_008345.1 3396884 3398959 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: plt:Plut_1539 receptor, putative; TonB-dependent receptor, plug complement(3396884..3398959) Shewanella frigidimarina NCIMB 400 4279723 YP_751497.1 CDS Sfri_2819 NC_008345.1 3399036 3399425 D PFAM: regulatory protein, MerR; KEGG: cps:CPS_1955 transcriptional regulator, MerR family; transcriptional regulator, MerR family protein 3399036..3399425 Shewanella frigidimarina NCIMB 400 4279724 YP_751498.1 CDS Sfri_2820 NC_008345.1 3400051 3401616 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pha:PSHAa0443 RNAse; beta-lactamase domain-containing protein 3400051..3401616 Shewanella frigidimarina NCIMB 400 4279725 YP_751499.1 CDS Sfri_2821 NC_008345.1 3401746 3402129 D crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein 3401746..3402129 Shewanella frigidimarina NCIMB 400 4279726 YP_751500.1 CDS Sfri_2822 NC_008345.1 3402428 3403780 R TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: msu:MS0967 CpsG protein; phosphoglucosamine mutase complement(3402428..3403780) Shewanella frigidimarina NCIMB 400 4279727 YP_751501.1 CDS Sfri_2823 NC_008345.1 3404159 3405046 R KEGG: ppr:PBPRA2674 putative UTP-glucose-1-phosphateuridylyltransferase, galU; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase complement(3404159..3405046) Shewanella frigidimarina NCIMB 400 4279728 YP_751502.1 CDS Sfri_2824 NC_008345.1 3405113 3406186 R TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: cps:CPS_2091 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase complement(3405113..3406186) Shewanella frigidimarina NCIMB 400 4279729 YP_751503.1 CDS Sfri_2825 NC_008345.1 3406320 3407399 R TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: ppr:PBPRA2673 hypothetical undecaprenylphosphateN-acetylglucosamine 1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase complement(3406320..3407399) Shewanella frigidimarina NCIMB 400 4279730 YP_751504.1 CDS Sfri_2826 NC_008345.1 3407915 3408970 R PFAM: glycosyl transferase, group 1; KEGG: sbo:SBO_0859 putative glycosyl transferase; group 1 glycosyl transferase complement(3407915..3408970) Shewanella frigidimarina NCIMB 400 4279731 YP_751505.1 CDS Sfri_2827 NC_008345.1 3408967 3409515 R KEGG: vvy:VV0303 dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(3408967..3409515) Shewanella frigidimarina NCIMB 400 4279732 YP_751506.1 CDS Sfri_2828 NC_008345.1 3409516 3410391 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: vvy:VV0302 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(3409516..3410391) Shewanella frigidimarina NCIMB 400 4279733 YP_751507.1 CDS Sfri_2829 NC_008345.1 3410394 3411263 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: vfi:VF0167 Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(3410394..3411263) Shewanella frigidimarina NCIMB 400 4279734 YP_751508.1 CDS Sfri_2830 NC_008345.1 3411263 3412366 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: vfi:VF0166 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(3411263..3412366) Shewanella frigidimarina NCIMB 400 4279735 YP_751509.1 CDS Sfri_2831 NC_008345.1 3412382 3413197 R KEGG: syn:slr2125 hypothetical protein; hypothetical protein complement(3412382..3413197) Shewanella frigidimarina NCIMB 400 4279736 YP_751510.1 CDS Sfri_2832 NC_008345.1 3413194 3414057 R PFAM: glycosyl transferase, family 2; KEGG: cac:CAC2174 glycosyltransferase; glycosyl transferase family protein complement(3413194..3414057) Shewanella frigidimarina NCIMB 400 4279737 YP_751511.1 CDS Sfri_2833 NC_008345.1 3414044 3415219 R KEGG: aci:ACIAD3337 hypothetical protein; hypothetical protein complement(3414044..3415219) Shewanella frigidimarina NCIMB 400 4279738 YP_751512.1 CDS Sfri_2834 NC_008345.1 3415253 3416470 R PFAM: polysaccharide biosynthesis protein; KEGG: bba:Bd1688 putative polysaccharide biosynthesis protein CpsL; polysaccharide biosynthesis protein complement(3415253..3416470) Shewanella frigidimarina NCIMB 400 4279739 YP_751513.1 CDS Sfri_2835 NC_008345.1 3416550 3418322 R TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; KEGG: nmu:Nmul_A2515 FkbH domain; HAD family phosphatase complement(3416550..3418322) Shewanella frigidimarina NCIMB 400 4279740 YP_751514.1 CDS Sfri_2836 NC_008345.1 3418323 3419084 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gvi:glr3777 probable oxidoreductase; short-chain dehydrogenase/reductase SDR complement(3418323..3419084) Shewanella frigidimarina NCIMB 400 4279741 YP_751515.1 CDS Sfri_2837 NC_008345.1 3419098 3420045 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: gvi:glr3776 phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(3419098..3420045) Shewanella frigidimarina NCIMB 400 4279742 YP_751516.1 CDS Sfri_2838 NC_008345.1 3420049 3420747 R PFAM: acylneuraminate cytidylyltransferase; KEGG: gvi:glr3775 hypothetical protein; acylneuraminate cytidylyltransferase complement(3420049..3420747) Shewanella frigidimarina NCIMB 400 4279743 YP_751517.1 CDS Sfri_2839 NC_008345.1 3420704 3421648 R PFAM: glycosyl transferase, family 2; KEGG: gvi:glr3774 hypothetical protein; glycosyl transferase family protein complement(3420704..3421648) Shewanella frigidimarina NCIMB 400 4279744 YP_751518.1 CDS Sfri_2840 NC_008345.1 3421654 3422523 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ret:RHE_CH00852 probable gluconolactonase protein (calcium-binding regucalcin-like); SMP-30/gluconolaconase/LRE domain-containing protein complement(3421654..3422523) Shewanella frigidimarina NCIMB 400 4279745 YP_751519.1 CDS Sfri_2841 NC_008345.1 3422883 3423863 R PFAM: lipopolysaccharide biosynthesis; KEGG: son:SO3191 chain length determinant protein; lipopolysaccharide biosynthesis protein complement(3422883..3423863) Shewanella frigidimarina NCIMB 400 4279746 YP_751520.1 CDS Sfri_2842 NC_008345.1 3424047 3424424 R crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein complement(3424047..3424424) Shewanella frigidimarina NCIMB 400 4279747 YP_751521.1 CDS Sfri_2843 NC_008345.1 3424583 3427315 R PFAM: polysaccharide export protein; KEGG: son:SO3193 polysaccharide biosynthesis protein; polysaccharide export protein complement(3424583..3427315) Shewanella frigidimarina NCIMB 400 4279748 YP_751522.1 CDS Sfri_2844 NC_008345.1 3427855 3428367 R KEGG: son:SO3194 transcriptional activator rfaH, putative; TIGRFAM: transcriptional activator RfaH; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; NusG antitermination factor complement(3427855..3428367) Shewanella frigidimarina NCIMB 400 4279749 YP_751523.1 CDS Sfri_2845 NC_008345.1 3428958 3429515 R KEGG: son:SO3343 hypothetical protein; hypothetical protein complement(3428958..3429515) Shewanella frigidimarina NCIMB 400 4279750 YP_751524.1 CDS Sfri_2846 NC_008345.1 3429834 3431579 R PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: cps:CPS_0506 putative sucrose phosphorylase; alpha amylase complement(3429834..3431579) Shewanella frigidimarina NCIMB 400 4279751 YP_751525.1 CDS Sfri_2847 NC_008345.1 3431606 3432826 R KEGG: cps:CPS_0507 hypothetical protein; hypothetical protein complement(3431606..3432826) Shewanella frigidimarina NCIMB 400 4279752 YP_751526.1 CDS Sfri_2848 NC_008345.1 3432828 3433688 R catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase complement(3432828..3433688) Shewanella frigidimarina NCIMB 400 4279753 YP_751527.1 CDS Sfri_2849 NC_008345.1 3434949 3435368 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(3434949..3435368) Shewanella frigidimarina NCIMB 400 4279754 YP_751528.1 CDS Sfri_2850 NC_008345.1 3435548 3436108 R PFAM: protein of unknown function DUF179; KEGG: son:SO3346 putative transcriptional regulator; hypothetical protein complement(3435548..3436108) Shewanella frigidimarina NCIMB 400 4279755 YP_751529.1 CDS Sfri_2851 NC_008345.1 3436142 3436471 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(3436142..3436471) Shewanella frigidimarina NCIMB 400 4279756 YP_751530.1 CDS Sfri_2852 NC_008345.1 3436726 3437739 R PFAM: ferrochelatase; KEGG: son:SO3348 ferrochelatase; ferrochelatase complement(3436726..3437739) Shewanella frigidimarina NCIMB 400 4279757 YP_751531.1 CDS Sfri_2853 NC_008345.1 3437992 3438525 R PFAM: glutathione peroxidase; KEGG: son:SO3349 glutathione peroxidase, putative; glutathione peroxidase complement(3437992..3438525) Shewanella frigidimarina NCIMB 400 4279758 YP_751532.1 CDS Sfri_2854 NC_008345.1 3438654 3439757 R KEGG: cps:CPS_4910 hypothetical protein; hypothetical protein complement(3438654..3439757) Shewanella frigidimarina NCIMB 400 4279759 YP_751533.1 CDS Sfri_2855 NC_008345.1 3439996 3440739 R PFAM: type II secretion system protein E; KEGG: son:SO3350 twitching motility protein PilU; type II secretion system protein E complement(3439996..3440739) Shewanella frigidimarina NCIMB 400 4279760 YP_751534.1 CDS Sfri_2856 NC_008345.1 3440781 3441047 D PFAM: transposase IS3/IS911 family protein; KEGG: son:SO4268 ISSod2, transposase OrfA; transposase IS3/IS911 family protein 3440781..3441047 Shewanella frigidimarina NCIMB 400 4279761 YP_751535.1 CDS Sfri_2857 NC_008345.1 3441041 3441868 D PFAM: Integrase, catalytic region; KEGG: xcv:XCV3412 ISxac2 transposase; integrase catalytic subunit 3441041..3441868 Shewanella frigidimarina NCIMB 400 4279762 YP_751536.1 CDS Sfri_2858 NC_008345.1 3441857 3442312 R KEGG: son:SO3350 twitching motility protein PilU; twitching motility protein PilU complement(3441857..3442312) Shewanella frigidimarina NCIMB 400 4279763 YP_751537.1 CDS Sfri_2859 NC_008345.1 3442325 3443362 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: son:SO3351 twitching motility protein PilT; twitching motility protein complement(3442325..3443362) Shewanella frigidimarina NCIMB 400 4279764 YP_751538.1 CDS Sfri_2860 NC_008345.1 3443390 3444076 D TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase domain protein; KEGG: son:SO3352 conserved hypothetical protein TIGR00044; hypothetical protein 3443390..3444076 Shewanella frigidimarina NCIMB 400 4279765 YP_751539.1 CDS Sfri_2861 NC_008345.1 3444380 3445198 D KEGG: son:SO3354 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 3444380..3445198 Shewanella frigidimarina NCIMB 400 4279766 YP_751540.1 CDS Sfri_2862 NC_008345.1 3445434 3445982 D PFAM: protein of unknown function YGGT; KEGG: son:SO3355 hypothetical protein; hypothetical protein 3445434..3445982 Shewanella frigidimarina NCIMB 400 4279767 YP_751541.1 CDS Sfri_2863 NC_008345.1 3446003 3446317 D TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF167; KEGG: son:SO3356 hypothetical protein; hypothetical protein 3446003..3446317 Shewanella frigidimarina NCIMB 400 4279768 YP_751542.1 CDS Sfri_2864 NC_008345.1 3446353 3446814 D KEGG: son:SO3357 hypothetical protein; hypothetical protein 3446353..3446814 Shewanella frigidimarina NCIMB 400 4279769 YP_751543.1 CDS Sfri_2865 NC_008345.1 3447083 3447757 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 3447083..3447757 Shewanella frigidimarina NCIMB 400 4279770 YP_751544.1 CDS Sfri_2866 NC_008345.1 3447758 3448897 D KEGG: son:SO3359 oxygen-independent coproporphyrinogen III oxidase, putative; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase 3447758..3448897 Shewanella frigidimarina NCIMB 400 4279771 YP_751545.1 CDS Sfri_2867 NC_008345.1 3449102 3450958 D PFAM: protein of unknown function DUF885; KEGG: son:SO3361 hypothetical protein; hypothetical protein 3449102..3450958 Shewanella frigidimarina NCIMB 400 4279772 YP_751546.1 CDS Sfri_2868 NC_008345.1 3451414 3452355 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3363 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(3451414..3452355) Shewanella frigidimarina NCIMB 400 4279773 YP_751547.1 CDS Sfri_2869 NC_008345.1 3452766 3453578 R KEGG: son:SO3364 hypothetical protein; hypothetical protein complement(3452766..3453578) Shewanella frigidimarina NCIMB 400 4279774 YP_751548.1 CDS Sfri_2870 NC_008345.1 3453806 3454720 R catalyzes the formation of glutamate from glutamine; glutaminase complement(3453806..3454720) Shewanella frigidimarina NCIMB 400 4279775 YP_751549.1 CDS Sfri_2871 NC_008345.1 3454727 3455053 R PFAM: protein of unknown function DUF469; KEGG: son:SO3366 hypothetical protein; hypothetical protein complement(3454727..3455053) Shewanella frigidimarina NCIMB 400 4279776 YP_751550.1 CDS trmB NC_008345.1 3455089 3455805 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(3455089..3455805) Shewanella frigidimarina NCIMB 400 4279777 YP_751551.1 CDS Sfri_2873 NC_008345.1 3456055 3457128 D TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; KEGG: son:SO3368 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase 3456055..3457128 Shewanella frigidimarina NCIMB 400 4279778 YP_751552.1 CDS Sfri_2874 NC_008345.1 3457163 3457441 D PFAM: Fe(II) trafficking protein YggX; KEGG: son:SO3369 hypothetical protein; hypothetical protein 3457163..3457441 Shewanella frigidimarina NCIMB 400 4279779 YP_751553.1 CDS Sfri_2875 NC_008345.1 3457532 3458107 R PFAM: YceI family protein; KEGG: son:SO3370 hypothetical protein; hypothetical protein complement(3457532..3458107) Shewanella frigidimarina NCIMB 400 4279780 YP_751554.1 CDS Sfri_2876 NC_008345.1 3458211 3458768 R PFAM: cytochrome B561; KEGG: son:SO3371 hypothetical cytochrome B561; cytochrome B561 complement(3458211..3458768) Shewanella frigidimarina NCIMB 400 4279781 YP_751555.1 CDS Sfri_2877 NC_008345.1 3460049 3460750 R PFAM: SapC family protein; KEGG: pha:PSHAa1142 hypothetical protein; SapC family protein complement(3460049..3460750) Shewanella frigidimarina NCIMB 400 4279782 YP_751556.1 CDS Sfri_2878 NC_008345.1 3460991 3462277 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO3517 NADH dehydrogenase; NADH dehydrogenase complement(3460991..3462277) Shewanella frigidimarina NCIMB 400 4279783 YP_751557.1 CDS Sfri_2879 NC_008345.1 3462356 3462694 R PFAM: nitrogen regulatory protein P-II; KEGG: son:SO3519 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II complement(3462356..3462694) Shewanella frigidimarina NCIMB 400 4279784 YP_751558.1 CDS Sfri_2880 NC_008345.1 3463119 3463640 D TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO3520 type IV pilus biogenesis protein, putative; prepilin-type cleavage/methylation-like protein 3463119..3463640 Shewanella frigidimarina NCIMB 400 4279785 YP_751559.1 CDS Sfri_2881 NC_008345.1 3464139 3464651 D PFAM: methylation site containing protein; KEGG: son:SO3521 type IV pilus biogenesis protein, putative; methylation site containing protein 3464139..3464651 Shewanella frigidimarina NCIMB 400 4279786 YP_751560.1 CDS Sfri_2882 NC_008345.1 3464671 3465087 R PFAM: methylation site containing protein; KEGG: son:SO3524 type IV pilus biogenesis protein PilE; methylation site containing protein complement(3464671..3465087) Shewanella frigidimarina NCIMB 400 4279787 YP_751561.1 CDS Sfri_2883 NC_008345.1 3465090 3468704 R KEGG: son:SO3525 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein, putative complement(3465090..3468704) Shewanella frigidimarina NCIMB 400 4279788 YP_751562.1 CDS Sfri_2884 NC_008345.1 3468706 3469158 R KEGG: son:SO3526 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX complement(3468706..3469158) Shewanella frigidimarina NCIMB 400 4279789 YP_751563.1 CDS Sfri_2885 NC_008345.1 3469192 3470214 R TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO3527 type IV pilus assembly protein PilW; prepilin-type cleavage/methylation-like protein complement(3469192..3470214) Shewanella frigidimarina NCIMB 400 4279790 YP_751564.1 CDS Sfri_2886 NC_008345.1 3470214 3470762 R TIGRFAM: type IV pilus modification protein PilV; PFAM: methylation site containing protein; KEGG: son:SO3528 type IV pilus assembly protein PilV; type IV pilus modification protein PilV complement(3470214..3470762) Shewanella frigidimarina NCIMB 400 4279791 YP_751565.1 CDS ispH NC_008345.1 3471047 3472006 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(3471047..3472006) Shewanella frigidimarina NCIMB 400 4279792 YP_751566.1 CDS Sfri_2888 NC_008345.1 3472019 3472462 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3530 peptidyl-prolyl cis-trans isomerase FkbP; peptidylprolyl isomerase, FKBP-type complement(3472019..3472462) Shewanella frigidimarina NCIMB 400 4279793 YP_751567.1 CDS lspA NC_008345.1 3472465 3472977 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(3472465..3472977) Shewanella frigidimarina NCIMB 400 4279794 YP_751568.1 CDS ileS NC_008345.1 3472991 3475822 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(3472991..3475822) Shewanella frigidimarina NCIMB 400 4279795 YP_751569.1 CDS Sfri_2891 NC_008345.1 3475847 3476782 R TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: son:SO3533 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF complement(3475847..3476782) Shewanella frigidimarina NCIMB 400 4279796 YP_751570.1 CDS Sfri_2892 NC_008345.1 3476919 3478493 R TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: son:SO3534 MviN protein; integral membrane protein MviN complement(3476919..3478493) Shewanella frigidimarina NCIMB 400 4279797 YP_751571.1 CDS rpsT NC_008345.1 3478737 3479003 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3478737..3479003 Shewanella frigidimarina NCIMB 400 4279798 YP_751572.1 CDS Sfri_2894 NC_008345.1 3479679 3479975 R PFAM: regulatory protein, ArsR; KEGG: son:SO3538 transcriptional regulator HlyU; ArsR family transcriptional regulator complement(3479679..3479975) Shewanella frigidimarina NCIMB 400 4279799 YP_751573.1 CDS Sfri_2895 NC_008345.1 3480108 3481553 D PFAM: peptidase M20; peptidase M28; KEGG: son:SO3539 peptidase, M28D family; peptidase M28 3480108..3481553 Shewanella frigidimarina NCIMB 400 4279800 YP_751574.1 CDS Sfri_2896 NC_008345.1 3481645 3482421 R PFAM: protein of unknown function DUF328; KEGG: son:SO3540 hypothetical protein; hypothetical protein complement(3481645..3482421) Shewanella frigidimarina NCIMB 400 4279801 YP_751575.1 CDS Sfri_2897 NC_008345.1 3482523 3483965 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO3541 sodium:alanine symporter family protein; amino acid carrier protein complement(3482523..3483965) Shewanella frigidimarina NCIMB 400 4279802 YP_751576.1 CDS Sfri_2898 NC_008345.1 3484483 3486849 D PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: son:SO3542 putative phosphoketolase; putative phosphoketolase 3484483..3486849 Shewanella frigidimarina NCIMB 400 4279803 YP_751577.1 CDS Sfri_2899 NC_008345.1 3487233 3488363 D PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: son:SO3545 OmpA family protein; OmpA/MotB domain-containing protein 3487233..3488363 Shewanella frigidimarina NCIMB 400 4279804 YP_751578.1 CDS Sfri_2900 NC_008345.1 3488660 3489613 D KEGG: son:SO3546 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 3488660..3489613 Shewanella frigidimarina NCIMB 400 4279805 YP_751579.1 CDS pgi NC_008345.1 3489629 3491266 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 3489629..3491266 Shewanella frigidimarina NCIMB 400 4279806 YP_751580.1 CDS Sfri_2902 NC_008345.1 3491446 3491631 D KEGG: son:SO3548 hypothetical protein; hypothetical protein 3491446..3491631 Shewanella frigidimarina NCIMB 400 4279807 YP_751581.1 CDS Sfri_2903 NC_008345.1 3491759 3492301 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: son:SO3549 hypothetical protein; hemerythrin HHE cation binding domain-containing protein complement(3491759..3492301) Shewanella frigidimarina NCIMB 400 4279808 YP_751582.1 CDS Sfri_2904 NC_008345.1 3492486 3493769 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(3492486..3493769) Shewanella frigidimarina NCIMB 400 4279809 YP_751583.1 CDS Sfri_2905 NC_008345.1 3493816 3494775 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(3493816..3494775) Shewanella frigidimarina NCIMB 400 4279810 YP_751584.1 CDS thrA NC_008345.1 3494772 3497237 R multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I complement(3494772..3497237) Shewanella frigidimarina NCIMB 400 4279811 YP_751585.1 CDS Sfri_2907 NC_008345.1 3497964 3498530 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3417 peptidyl-prolyl cis-trans isomerase SlyD; peptidylprolyl isomerase, FKBP-type 3497964..3498530 Shewanella frigidimarina NCIMB 400 4279812 YP_751586.1 CDS Sfri_2908 NC_008345.1 3498777 3499154 D KEGG: son:SO3418 hypothetical protein; hypothetical protein 3498777..3499154 Shewanella frigidimarina NCIMB 400 4279813 YP_751587.1 CDS Sfri_2909 NC_008345.1 3499408 3499686 R TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: son:SO3419 trp operon repressor; Trp operon repressor complement(3499408..3499686) Shewanella frigidimarina NCIMB 400 4279814 YP_751588.1 CDS Sfri_2910 NC_008345.1 3500001 3500450 D PFAM: cytochrome c, class II; KEGG: son:SO3420 cytochrome c'; cytochrome c, class II 3500001..3500450 Shewanella frigidimarina NCIMB 400 4279815 YP_751589.1 CDS Sfri_2911 NC_008345.1 3500585 3501250 R PFAM: cytochrome B561; KEGG: son:SO3421 b-type cytochrome, putative; cytochrome B561 complement(3500585..3501250) Shewanella frigidimarina NCIMB 400 4279816 YP_751590.1 CDS Sfri_2912 NC_008345.1 3501689 3502042 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3422 ribosomal subunit interface protein; sigma 54 modulation protein/ribosomal protein S30EA 3501689..3502042 Shewanella frigidimarina NCIMB 400 4279817 YP_751591.1 CDS Sfri_2913 NC_008345.1 3502346 3504292 D TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: son:SO1367 prephenate dehydratase / chorismate mutase / phospho-2-dehydro-3-deoxyheptonate aldolase; chorismate mutase 3502346..3504292 Shewanella frigidimarina NCIMB 400 4279818 YP_751592.1 CDS Sfri_2914 NC_008345.1 3504400 3504744 R KEGG: son:SO1365 hypothetical protein; hypothetical protein complement(3504400..3504744) Shewanella frigidimarina NCIMB 400 4279819 YP_751593.1 CDS tyrA NC_008345.1 3504875 3506026 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase complement(3504875..3506026) Shewanella frigidimarina NCIMB 400 4279820 YP_751594.1 CDS Sfri_2916 NC_008345.1 3506026 3507117 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3506026..3507117) Shewanella frigidimarina NCIMB 400 4279821 YP_751595.1 CDS rplS NC_008345.1 3507622 3507975 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(3507622..3507975) Shewanella frigidimarina NCIMB 400 4279822 YP_751596.1 CDS trmD NC_008345.1 3508009 3508755 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(3508009..3508755) Shewanella frigidimarina NCIMB 400 4279823 YP_751597.1 CDS rimM NC_008345.1 3508771 3509301 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(3508771..3509301) Shewanella frigidimarina NCIMB 400 4279824 YP_751598.1 CDS rpsP NC_008345.1 3509323 3509574 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(3509323..3509574) Shewanella frigidimarina NCIMB 400 4279825 YP_751599.1 CDS Sfri_2921 NC_008345.1 3509804 3511177 R with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein complement(3509804..3511177) Shewanella frigidimarina NCIMB 400 4279826 YP_751600.1 CDS Sfri_2922 NC_008345.1 3511460 3512248 D PFAM: cytochrome c assembly protein; KEGG: son:SO1355 hypothetical protein; cytochrome c assembly protein 3511460..3512248 Shewanella frigidimarina NCIMB 400 4279827 YP_751601.1 CDS Sfri_2923 NC_008345.1 3512401 3513681 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO1354 hemolysin protein, putative; hypothetical protein 3512401..3513681 Shewanella frigidimarina NCIMB 400 4279828 YP_751602.1 CDS Sfri_2924 NC_008345.1 3513743 3514267 R PFAM: protein of unknown function DUF962; KEGG: son:SO1353 hypothetical protein; hypothetical protein complement(3513743..3514267) Shewanella frigidimarina NCIMB 400 4279829 YP_751603.1 CDS acpS NC_008345.1 3514573 3514953 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(3514573..3514953) Shewanella frigidimarina NCIMB 400 4279830 YP_751604.1 CDS Sfri_2926 NC_008345.1 3514953 3515750 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(3514953..3515750) Shewanella frigidimarina NCIMB 400 4279831 YP_751605.1 CDS Sfri_2927 NC_008345.1 3515800 3516522 R TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: son:SO1350 DNA repair protein RecO; DNA repair protein RecO complement(3515800..3516522) Shewanella frigidimarina NCIMB 400 4279832 YP_751606.1 CDS era NC_008345.1 3516559 3517563 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(3516559..3517563) Shewanella frigidimarina NCIMB 400 4279833 YP_751607.1 CDS rnc NC_008345.1 3517560 3518240 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(3517560..3518240) Shewanella frigidimarina NCIMB 400 4279834 YP_751608.1 CDS Sfri_2930 NC_008345.1 3518240 3519154 R KEGG: son:SO1347 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I complement(3518240..3519154) Shewanella frigidimarina NCIMB 400 4279835 YP_751609.1 CDS Sfri_2931 NC_008345.1 3519620 3521410 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(3519620..3521410) Shewanella frigidimarina NCIMB 400 4279836 YP_751610.1 CDS Sfri_2932 NC_008345.1 3521636 3522142 R PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: son:SO1345 sigma-E factor regulatory protein RseC; sigma E positive regulator RseC/MucC complement(3521636..3522142) Shewanella frigidimarina NCIMB 400 4279837 YP_751611.1 CDS Sfri_2933 NC_008345.1 3522306 3523253 R PFAM: MucB/RseB family protein; KEGG: son:SO1344 sigma-E factor regulatory protein RseB; sigma E regulatory protein, MucB/RseB complement(3522306..3523253) Shewanella frigidimarina NCIMB 400 4279838 YP_751612.1 CDS Sfri_2934 NC_008345.1 3523279 3523896 R PFAM: Anti sigma-E protein RseA domain protein; KEGG: son:SO1343 sigma-E factor negative regulatory protein; anti sigma-E protein RseA domain-containing protein complement(3523279..3523896) Shewanella frigidimarina NCIMB 400 4279839 YP_751613.1 CDS Sfri_2935 NC_008345.1 3523923 3524501 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(3523923..3524501) Shewanella frigidimarina NCIMB 400 4279840 YP_751614.1 CDS Sfri_2936 NC_008345.1 3524736 3526352 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 3524736..3526352 Shewanella frigidimarina NCIMB 400 4279841 YP_751615.1 CDS Sfri_2937 NC_008345.1 3526383 3526856 R KEGG: son:SO1340 hypothetical protein; hypothetical protein complement(3526383..3526856) Shewanella frigidimarina NCIMB 400 4279842 YP_751616.1 CDS Sfri_2938 NC_008345.1 3526837 3527088 R PFAM: protein of unknown function DUF339; KEGG: son:SO1339 hypothetical protein; hypothetical protein complement(3526837..3527088) Shewanella frigidimarina NCIMB 400 4279843 YP_751617.1 CDS nhaR NC_008345.1 3527115 3528038 R Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR complement(3527115..3528038) Shewanella frigidimarina NCIMB 400 4279844 YP_751618.1 CDS Sfri_2940 NC_008345.1 3528209 3528595 R KEGG: son:SO1337 hypothetical protein; hypothetical protein complement(3528209..3528595) Shewanella frigidimarina NCIMB 400 4279845 YP_751619.1 CDS nhaA NC_008345.1 3528582 3529766 R exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter complement(3528582..3529766) Shewanella frigidimarina NCIMB 400 4279846 YP_751620.1 CDS thyA NC_008345.1 3529982 3530833 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 3529982..3530833 Shewanella frigidimarina NCIMB 400 4279847 YP_751621.1 CDS Sfri_2943 NC_008345.1 3530911 3531711 R PFAM: protein of unknown function DUF81; KEGG: son:SO1333 hypothetical protein; hypothetical protein complement(3530911..3531711) Shewanella frigidimarina NCIMB 400 4279848 YP_751622.1 CDS Sfri_2944 NC_008345.1 3531800 3534040 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: son:SO1332 phosphoenolpyruvate-protein phosphotransferase PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP complement(3531800..3534040) Shewanella frigidimarina NCIMB 400 4279849 YP_751623.1 CDS Sfri_2945 NC_008345.1 3534065 3534583 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(3534065..3534583) Shewanella frigidimarina NCIMB 400 4279850 YP_751624.1 CDS Sfri_2946 NC_008345.1 3535347 3536015 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3535347..3536015 Shewanella frigidimarina NCIMB 400 4279851 YP_751625.1 CDS Sfri_2947 NC_008345.1 3536536 3537558 D KEGG: son:SO1329 adenylate cyclase-related protein; putative adenylate/guanylate cyclase 3536536..3537558 Shewanella frigidimarina NCIMB 400 4279852 YP_751626.1 CDS Sfri_2948 NC_008345.1 3537758 3538675 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1328 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein complement(3537758..3538675) Shewanella frigidimarina NCIMB 400 4279853 YP_751627.1 CDS Sfri_2949 NC_008345.1 3538881 3539246 R PFAM: Hpt domain protein; KEGG: son:SO1327 sensor histidine kinase-related protein; Hpt protein complement(3538881..3539246) Shewanella frigidimarina NCIMB 400 4279854 YP_751628.1 CDS Sfri_2950 NC_008345.1 3539532 3540500 R KEGG: son:SO1326 hypothetical protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; putative radical SAM protein complement(3539532..3540500) Shewanella frigidimarina NCIMB 400 4279855 YP_751629.1 CDS gltB NC_008345.1 3541024 3545472 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3541024..3545472 Shewanella frigidimarina NCIMB 400 4279856 YP_751630.1 CDS gltD NC_008345.1 3545478 3546884 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3545478..3546884 Shewanella frigidimarina NCIMB 400 4279857 YP_751631.1 CDS Sfri_2953 NC_008345.1 3547074 3547742 R PFAM: type IV pilus assembly PilZ; KEGG: vfi:VF1838 hypothetical protein; type IV pilus assembly PilZ complement(3547074..3547742) Shewanella frigidimarina NCIMB 400 4279858 YP_751632.1 CDS Sfri_2954 NC_008345.1 3548430 3550388 D PFAM: iron permease FTR1; KEGG: ilo:IL0111 high-affinity Fe2+/Pb2+ permease; iron permease FTR1 3548430..3550388 Shewanella frigidimarina NCIMB 400 4279859 YP_751633.1 CDS Sfri_2955 NC_008345.1 3550510 3550923 R KEGG: pha:PSHAb0233 hypothetical protein; hypothetical protein complement(3550510..3550923) Shewanella frigidimarina NCIMB 400 4279860 YP_751634.1 CDS Sfri_2956 NC_008345.1 3551164 3553536 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAb0232 putative TonB dependent receptor; TonB-dependent receptor 3551164..3553536 Shewanella frigidimarina NCIMB 400 4279861 YP_751635.1 CDS Sfri_2957 NC_008345.1 3553548 3555701 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: pha:PSHAb0231 mercuric reductase (Hg(II) reductase); pyridine nucleotide-disulfide oxidoreductase dimerisation region 3553548..3555701 Shewanella frigidimarina NCIMB 400 4279862 YP_751636.1 CDS Sfri_2958 NC_008345.1 3555863 3556756 D PFAM: protein of unknown function DUF547; KEGG: pha:PSHAb0230 putative secreted protein similar to a protein present in D.psychrophila; hypothetical protein 3555863..3556756 Shewanella frigidimarina NCIMB 400 4279863 YP_751637.1 CDS Sfri_2959 NC_008345.1 3556872 3558131 D KEGG: pha:PSHAb0229 putative ABC-type transport system, periplasmic component; putative ABC transporter solute-binding protein 3556872..3558131 Shewanella frigidimarina NCIMB 400 4279864 YP_751638.1 CDS Sfri_2960 NC_008345.1 3558128 3559885 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pha:PSHAb0228 putative ABC-type transport system, permease component; binding-protein-dependent transport systems inner membrane component 3558128..3559885 Shewanella frigidimarina NCIMB 400 4279865 YP_751639.1 CDS Sfri_2961 NC_008345.1 3559894 3560574 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pha:PSHAb0227 putative ABC transporter ATP-binding; ABC transporter 3559894..3560574 Shewanella frigidimarina NCIMB 400 4279866 YP_751640.1 CDS Sfri_2962 NC_008345.1 3560608 3561273 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pha:PSHAb0226 putative CDP-alcohol phosphatidyltransferase or phosphatidylglycerophosphate synthase; CDP-alcohol phosphatidyltransferase 3560608..3561273 Shewanella frigidimarina NCIMB 400 4279867 YP_751641.1 CDS Sfri_2963 NC_008345.1 3561270 3562082 D KEGG: par:Psyc_1393 possible sterol desaturase; putative sterol desaturase 3561270..3562082 Shewanella frigidimarina NCIMB 400 4279868 YP_751642.1 CDS Sfri_2964 NC_008345.1 3562302 3563387 D PFAM: chemotaxis sensory transducer; KEGG: son:SO1144 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3562302..3563387 Shewanella frigidimarina NCIMB 400 4279869 YP_751643.1 CDS Sfri_2965 NC_008345.1 3563575 3565839 D PFAM: EAL domain protein; KEGG: ilo:IL1784 disrupted signaling protein (xGGDEF and EAL domains); diguanylate phosphodiesterase 3563575..3565839 Shewanella frigidimarina NCIMB 400 4279870 YP_751644.1 CDS Sfri_2966 NC_008345.1 3565984 3566676 D PFAM: purine and other phosphorylases, family 1; KEGG: son:SO1322 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase; adenosylhomocysteine nucleosidase 3565984..3566676 Shewanella frigidimarina NCIMB 400 4279871 YP_751645.1 CDS Sfri_2967 NC_008345.1 3566760 3567767 D KEGG: son:SO1321 CobD-related protein; CobD-like protein 3566760..3567767 Shewanella frigidimarina NCIMB 400 4279872 YP_751646.1 CDS Sfri_2968 NC_008345.1 3567966 3568355 D KEGG: son:SO1320 hypothetical protein; hypothetical protein 3567966..3568355 Shewanella frigidimarina NCIMB 400 4279873 YP_751647.1 CDS Sfri_2969 NC_008345.1 3568352 3568978 D PFAM: protein of unknown function UPF0126; KEGG: son:SO1319 hypothetical protein; hypothetical protein 3568352..3568978 Shewanella frigidimarina NCIMB 400 4279874 YP_751648.1 CDS Sfri_2970 NC_008345.1 3568980 3569456 D KEGG: son:SO1318 hypothetical protein; hypothetical protein 3568980..3569456 Shewanella frigidimarina NCIMB 400 4279875 YP_751649.1 CDS Sfri_2971 NC_008345.1 3569551 3570747 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(3569551..3570747) Shewanella frigidimarina NCIMB 400 4279876 YP_751650.1 CDS Sfri_2972 NC_008345.1 3570873 3572411 D PFAM: peptidase M23B; KEGG: son:SO1314 peptidase, M23/M37 family; peptidase M23B 3570873..3572411 Shewanella frigidimarina NCIMB 400 4279877 YP_751651.1 CDS anmK NC_008345.1 3572448 3573560 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 3572448..3573560 Shewanella frigidimarina NCIMB 400 4279878 YP_751652.1 CDS Sfri_2974 NC_008345.1 3573663 3574061 D KEGG: son:SO1306 hypothetical protein; hypothetical protein 3573663..3574061 Shewanella frigidimarina NCIMB 400 4279879 YP_751653.1 CDS Sfri_2975 NC_008345.1 3574068 3574532 D KEGG: son:SO1305 hypothetical protein; hypothetical protein 3574068..3574532 Shewanella frigidimarina NCIMB 400 4279880 YP_751654.1 CDS Sfri_2976 NC_008345.1 3574935 3575285 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(3574935..3575285) Shewanella frigidimarina NCIMB 400 4279881 YP_751655.1 CDS Sfri_2977 NC_008345.1 3575307 3576080 R KEGG: son:SO1303 hypothetical protein; hypothetical protein complement(3575307..3576080) Shewanella frigidimarina NCIMB 400 4279882 YP_751656.1 CDS Sfri_2978 NC_008345.1 3576404 3578128 D PFAM: Cl- channel, voltage-gated family protein; KEGG: son:SO1302 chloride channel; Cl- channel, voltage-gated family protein 3576404..3578128 Shewanella frigidimarina NCIMB 400 4279883 YP_751657.1 CDS Sfri_2979 NC_008345.1 3578635 3579654 D Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase 3578635..3579654 Shewanella frigidimarina NCIMB 400 4279884 YP_751658.1 CDS Sfri_2980 NC_008345.1 3579681 3580967 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3579681..3580967 Shewanella frigidimarina NCIMB 400 4279885 YP_751659.1 CDS Sfri_2981 NC_008345.1 3581292 3582539 D PFAM: Citrate transporter; KEGG: sde:Sde_2571 endonuclease III/Nth; citrate transporter 3581292..3582539 Shewanella frigidimarina NCIMB 400 4279886 YP_751660.1 CDS Sfri_2982 NC_008345.1 3582628 3583737 R KEGG: son:SO1298 general secretion pathway protein B; general secretion pathway protein B complement(3582628..3583737) Shewanella frigidimarina NCIMB 400 4279887 YP_751661.1 CDS Sfri_2983 NC_008345.1 3583737 3585410 R PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: son:SO1297 general secretion pathway protein A; peptidoglycan binding domain-containing protein complement(3583737..3585410) Shewanella frigidimarina NCIMB 400 4279888 YP_751662.1 CDS Sfri_2984 NC_008345.1 3585541 3586785 D PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: vfi:VF2244 tRNA nucleotidyltransferase; metal dependent phosphohydrolase 3585541..3586785 Shewanella frigidimarina NCIMB 400 4279889 YP_751663.1 CDS Sfri_2985 NC_008345.1 3587054 3587320 D KEGG: son:SO1295 major outer membrane lipoprotein, putative; major outer membrane lipoprotein, putative 3587054..3587320 Shewanella frigidimarina NCIMB 400 4279890 YP_751664.1 CDS Sfri_2986 NC_008345.1 3587379 3587723 D KEGG: tcr:508693.190 hypothetical protein Pfam: Plasmodium_HRP TolA PROSITE: GLU_RICH; hypothetical protein 3587379..3587723 Shewanella frigidimarina NCIMB 400 4279891 YP_751665.1 CDS Sfri_2987 NC_008345.1 3588010 3588852 R KEGG: son:SO1294 ribosomal RNA large subunit methyltransferase A, putative; ribosomal RNA large subunit methyltransferase A complement(3588010..3588852) Shewanella frigidimarina NCIMB 400 4279892 YP_751666.1 CDS Sfri_2988 NC_008345.1 3588959 3589759 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(3588959..3589759) Shewanella frigidimarina NCIMB 400 4279893 YP_751667.1 CDS Sfri_2989 NC_008345.1 3589794 3590309 R TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: son:SO1292 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(3589794..3590309) Shewanella frigidimarina NCIMB 400 4279894 YP_751668.1 CDS Sfri_2990 NC_008345.1 3590346 3590699 R TIGRFAM: dihydroneopterin aldolase; KEGG: son:SO1291 dihydroneopterin aldolase; dihydroneopterin aldolase complement(3590346..3590699) Shewanella frigidimarina NCIMB 400 4279895 YP_751669.1 CDS Sfri_2991 NC_008345.1 3590979 3591572 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 3590979..3591572 Shewanella frigidimarina NCIMB 400 4279896 YP_751670.1 CDS Sfri_2992 NC_008345.1 3591651 3592667 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(3591651..3592667) Shewanella frigidimarina NCIMB 400 4279897 YP_751671.1 CDS rpsU NC_008345.1 3593142 3593357 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3593142..3593357 Shewanella frigidimarina NCIMB 400 4279898 YP_751672.1 CDS Sfri_2994 NC_008345.1 3593365 3593808 D PFAM: GatB/Yqey domain protein; KEGG: son:SO1287 hypothetical protein; GatB/Yqey domain-containing protein 3593365..3593808 Shewanella frigidimarina NCIMB 400 4279899 YP_751673.1 CDS Sfri_2995 NC_008345.1 3593898 3595625 D KEGG: son:SO1286 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase DnaG, DnaB-binding; DNA primase catalytic core, N-terminal domain protein; SMART: Toprim sub domain protein; DNA primase 3593898..3595625 Shewanella frigidimarina NCIMB 400 4279900 YP_751674.1 CDS Sfri_2996 NC_008345.1 3595767 3597611 D TIGRFAM: RNA polymerase sigma factor RpoD; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: son:SO1284 RNA polymerase sigma-70 factor; RNA polymerase sigma-70 subunit RpoD 3595767..3597611 Shewanella frigidimarina NCIMB 400 4279901 YP_751675.1 CDS Sfri_2998 NC_008345.1 3599501 3600457 D KEGG: hch:HCH_00813 hypothetical protein; hypothetical protein 3599501..3600457 Shewanella frigidimarina NCIMB 400 4279902 YP_751676.1 CDS Sfri_2999 NC_008345.1 3600502 3602148 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; Cache domain protein; KEGG: tdn:Tmden_0836 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(3600502..3602148) Shewanella frigidimarina NCIMB 400 4279903 YP_751677.1 CDS Sfri_3000 NC_008345.1 3602336 3603058 R PFAM: protein of unknown function DUF599; KEGG: son:SO3776 hypothetical protein; hypothetical protein complement(3602336..3603058) Shewanella frigidimarina NCIMB 400 4279904 YP_751678.1 CDS Sfri_3001 NC_008345.1 3603144 3603803 R PFAM: pseudouridine synthase; KEGG: pha:PSHAa1206 23S rRNA pseudouridylate synthase; pseudouridine synthase complement(3603144..3603803) Shewanella frigidimarina NCIMB 400 4279905 YP_751679.1 CDS Sfri_3002 NC_008345.1 3603898 3606015 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO1278 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(3603898..3606015) Shewanella frigidimarina NCIMB 400 4279906 YP_751680.1 CDS Sfri_3003 NC_008345.1 3606150 3607424 R catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase complement(3606150..3607424) Shewanella frigidimarina NCIMB 400 4279907 YP_751681.1 CDS Sfri_3004 NC_008345.1 3607436 3608884 R KEGG: son:SO1275 succinate-semialdehyde dehydrogenase (NADP+); TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate-semialdehyde dehydrogenase complement(3607436..3608884) Shewanella frigidimarina NCIMB 400 4279908 YP_751682.1 CDS Sfri_3005 NC_008345.1 3608965 3610251 R PFAM: FAD dependent oxidoreductase; KEGG: son:SO1274 probable oxidoreductase; FAD dependent oxidoreductase complement(3608965..3610251) Shewanella frigidimarina NCIMB 400 4279909 YP_751683.1 CDS Sfri_3006 NC_008345.1 3610459 3611274 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1273 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(3610459..3611274) Shewanella frigidimarina NCIMB 400 4279910 YP_751684.1 CDS Sfri_3007 NC_008345.1 3611271 3612170 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1272 polyamine ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component complement(3611271..3612170) Shewanella frigidimarina NCIMB 400 4279911 YP_751685.1 CDS Sfri_3008 NC_008345.1 3612167 3613303 R KEGG: son:SO1271 polyamine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(3612167..3613303) Shewanella frigidimarina NCIMB 400 4279912 YP_751686.1 CDS Sfri_3009 NC_008345.1 3613463 3614563 R PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO1270 polyamine ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein complement(3613463..3614563) Shewanella frigidimarina NCIMB 400 4279913 YP_751687.1 CDS Sfri_3010 NC_008345.1 3614822 3616222 R PFAM: aminotransferase class-III; KEGG: cps:CPS_4663 aminotransferase, class III; putative aminotransferase complement(3614822..3616222) Shewanella frigidimarina NCIMB 400 4279914 YP_751688.1 CDS Sfri_3011 NC_008345.1 3616320 3617675 R PFAM: glutamine synthetase, catalytic region; KEGG: son:SO1268 glutamine synthetase; glutamate--ammonia ligase complement(3616320..3617675) Shewanella frigidimarina NCIMB 400 4279915 YP_751689.1 CDS Sfri_3012 NC_008345.1 3617678 3618442 R PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: son:SO1267 hypothetical glutamine amidotransferase; peptidase C26 complement(3617678..3618442) Shewanella frigidimarina NCIMB 400 4279916 YP_751690.1 CDS Sfri_3013 NC_008345.1 3618887 3619435 R PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: son:SO1265 transcriptional regulator, putative; XRE family transcriptional regulator complement(3618887..3619435) Shewanella frigidimarina NCIMB 400 4279917 YP_751691.1 CDS Sfri_3014 NC_008345.1 3619669 3620976 D PFAM: FAD dependent oxidoreductase; KEGG: son:SO1264 hypothetical oxidoreductase; FAD dependent oxidoreductase 3619669..3620976 Shewanella frigidimarina NCIMB 400 4279918 YP_751692.1 CDS Sfri_3015 NC_008345.1 3621622 3623058 R hypothetical protein complement(3621622..3623058) Shewanella frigidimarina NCIMB 400 4279919 YP_751693.1 CDS Sfri_3016 NC_008345.1 3623223 3623534 D PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 3623223..3623534 Shewanella frigidimarina NCIMB 400 4279920 YP_751694.1 CDS Sfri_3017 NC_008345.1 3623588 3624400 D PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 3623588..3624400 Shewanella frigidimarina NCIMB 400 4279921 YP_751695.1 CDS Sfri_3018 NC_008345.1 3624789 3625505 R KEGG: vvy:VV2226 hypothetical protein; hypothetical protein complement(3624789..3625505) Shewanella frigidimarina NCIMB 400 4279922 YP_751696.1 CDS Sfri_3019 NC_008345.1 3626410 3627243 R PFAM: Rhodanese domain protein; KEGG: son:SO1261 mercaptopyruvate sulfurtransferase; 3-mercaptopyruvate sulfurtransferase complement(3626410..3627243) Shewanella frigidimarina NCIMB 400 4279923 YP_751697.1 CDS Sfri_3020 NC_008345.1 3627294 3627716 R KEGG: hch:HCH_02647 hypothetical protein; hypothetical protein complement(3627294..3627716) Shewanella frigidimarina NCIMB 400 4279924 YP_751698.1 CDS Sfri_3021 NC_008345.1 3627953 3629449 R PFAM: aldehyde dehydrogenase; KEGG: son:SO3496 aldehyde dehydrogenase; aldehyde dehydrogenase complement(3627953..3629449) Shewanella frigidimarina NCIMB 400 4279925 YP_751699.1 CDS Sfri_3022 NC_008345.1 3629762 3631114 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 3629762..3631114 Shewanella frigidimarina NCIMB 400 4279926 YP_751700.1 CDS Sfri_3023 NC_008345.1 3631168 3632667 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: hch:HCH_01157 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 3631168..3632667 Shewanella frigidimarina NCIMB 400 4279927 YP_751701.1 CDS Sfri_3024 NC_008345.1 3632680 3633054 D PFAM: protein of unknown function DUF861, cupin_3; KEGG: son:SO3501 hypothetical protein; hypothetical protein 3632680..3633054 Shewanella frigidimarina NCIMB 400 4279928 YP_751702.1 CDS Sfri_3025 NC_008345.1 3633175 3633897 D TIGRFAM: conserved hypothetical protein; KEGG: son:SO3502 hypothetical protein; hypothetical protein 3633175..3633897 Shewanella frigidimarina NCIMB 400 4279929 YP_751703.1 CDS Sfri_3026 NC_008345.1 3634028 3634207 R hypothetical protein complement(3634028..3634207) Shewanella frigidimarina NCIMB 400 4279930 YP_751704.1 CDS Sfri_3027 NC_008345.1 3634615 3634959 D KEGG: son:SO3374 hypothetical protein; hypothetical protein 3634615..3634959 Shewanella frigidimarina NCIMB 400 4279931 YP_751705.1 CDS Sfri_3028 NC_008345.1 3635049 3635693 R KEGG: son:SO3376 hypothetical protein; hypothetical protein complement(3635049..3635693) Shewanella frigidimarina NCIMB 400 4279932 YP_751706.1 CDS Sfri_3029 NC_008345.1 3635693 3636304 R KEGG: son:SO3377 hypothetical protein; hypothetical protein complement(3635693..3636304) Shewanella frigidimarina NCIMB 400 4279933 YP_751707.1 CDS Sfri_3030 NC_008345.1 3636391 3636981 R KEGG: son:SO3378 hypothetical protein; hypothetical protein complement(3636391..3636981) Shewanella frigidimarina NCIMB 400 4279934 YP_751708.1 CDS Sfri_3031 NC_008345.1 3637002 3638240 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO3379 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(3637002..3638240) Shewanella frigidimarina NCIMB 400 4279935 YP_751709.1 CDS Sfri_3032 NC_008345.1 3638341 3639162 R PFAM: protein of unknown function DUF1365; KEGG: son:SO3380 hypothetical protein; hypothetical protein complement(3638341..3639162) Shewanella frigidimarina NCIMB 400 4279936 YP_751710.1 CDS Sfri_3033 NC_008345.1 3639159 3640427 R PFAM: amine oxidase; KEGG: son:SO3381 hypothetical protein; amine oxidase complement(3639159..3640427) Shewanella frigidimarina NCIMB 400 4279937 YP_751711.1 CDS Sfri_3034 NC_008345.1 3640482 3641231 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO3382 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(3640482..3641231) Shewanella frigidimarina NCIMB 400 4279938 YP_751712.1 CDS Sfri_3035 NC_008345.1 3641231 3641734 R PFAM: protein of unknown function DUF1486; KEGG: son:SO3383 transcriptional regulator-related protein; hypothetical protein complement(3641231..3641734) Shewanella frigidimarina NCIMB 400 4279939 YP_751713.1 CDS Sfri_3036 NC_008345.1 3641962 3643371 R PFAM: cytochrome c552; KEGG: stm:STM4277 nitrite reductase periplasmic cytochrome c552; nitrite reductase (cytochrome; ammonia-forming) complement(3641962..3643371) Shewanella frigidimarina NCIMB 400 4279940 YP_751714.1 CDS Sfri_3037 NC_008345.1 3643502 3644713 R PFAM: NnrS family protein; KEGG: vch:VC2330 putative uncharacterized protein involved in response to NO; NnrS family protein complement(3643502..3644713) Shewanella frigidimarina NCIMB 400 4279941 YP_751715.1 CDS Sfri_3038 NC_008345.1 3645027 3646460 R PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: son:SO3384 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase complement(3645027..3646460) Shewanella frigidimarina NCIMB 400 4279942 YP_751716.1 CDS Sfri_3039 NC_008345.1 3646472 3647434 R PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: son:SO3386 hypothetical protein; hypothetical protein complement(3646472..3647434) Shewanella frigidimarina NCIMB 400 4279943 YP_751717.1 CDS Sfri_3040 NC_008345.1 3647694 3648623 R PFAM: protein of unknown function DUF368; KEGG: son:SO1400 hypothetical protein; hypothetical protein complement(3647694..3648623) Shewanella frigidimarina NCIMB 400 4279944 YP_751718.1 CDS Sfri_3041 NC_008345.1 3648763 3649239 D KEGG: cps:CPS_4932 hypothetical protein; hypothetical protein 3648763..3649239 Shewanella frigidimarina NCIMB 400 4279945 YP_751719.1 CDS Sfri_3042 NC_008345.1 3649284 3650171 D PFAM: band 7 protein; KEGG: son:SO0445 HflC protein, putative; hypothetical protein 3649284..3650171 Shewanella frigidimarina NCIMB 400 4279946 YP_751720.1 CDS Sfri_3043 NC_008345.1 3650389 3651537 D PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: son:SO1396 hypothetical protein; hypothetical protein 3650389..3651537 Shewanella frigidimarina NCIMB 400 4279947 YP_751721.1 CDS Sfri_3044 NC_008345.1 3651657 3652007 D PFAM: protein of unknown function DUF1294; KEGG: son:SO1395 membrane protein,putative; hypothetical protein 3651657..3652007 Shewanella frigidimarina NCIMB 400 4279948 YP_751722.1 CDS Sfri_3045 NC_008345.1 3652116 3652580 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1390 peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 3652116..3652580 Shewanella frigidimarina NCIMB 400 4279949 YP_751723.1 CDS Sfri_3046 NC_008345.1 3652701 3653915 R PFAM: peptidase M24; KEGG: cps:CPS_1459 metallopeptidase, M24 family; peptidase M24 complement(3652701..3653915) Shewanella frigidimarina NCIMB 400 4279950 YP_751724.1 CDS Sfri_3047 NC_008345.1 3654187 3655974 D PFAM: peptidase M24; KEGG: son:SO1388 aminopeptidase P, putative; peptidase M24 3654187..3655974 Shewanella frigidimarina NCIMB 400 4279951 YP_751725.1 CDS Sfri_3048 NC_008345.1 3656744 3658099 D PFAM: Xanthine/uracil/vitamin C permease; KEGG: son:SO1236 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 3656744..3658099 Shewanella frigidimarina NCIMB 400 4279952 YP_751726.1 CDS Sfri_3049 NC_008345.1 3658718 3660181 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 3658718..3660181 Shewanella frigidimarina NCIMB 400 4279953 YP_751727.1 CDS Sfri_3050 NC_008345.1 3660218 3660628 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 3660218..3660628 Shewanella frigidimarina NCIMB 400 4279954 YP_751728.1 CDS Sfri_3051 NC_008345.1 3660829 3661206 D TIGRFAM: F0F1-ATPase subunit, putative; KEGG: mba:Mbar_A3104 H(+)-transporting ATP synthase, gene 1; F0F1-ATPase subunit, putative 3660829..3661206 Shewanella frigidimarina NCIMB 400 4279955 YP_751729.1 CDS Sfri_3052 NC_008345.1 3661313 3661657 D KEGG: rfr:Rfer_1164 hypothetical protein; hypothetical protein 3661313..3661657 Shewanella frigidimarina NCIMB 400 4279956 YP_751730.1 CDS Sfri_3053 NC_008345.1 3661654 3662394 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 3661654..3662394 Shewanella frigidimarina NCIMB 400 4279957 YP_751731.1 CDS Sfri_3054 NC_008345.1 3662426 3662707 D produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 3662426..3662707 Shewanella frigidimarina NCIMB 400 4279958 YP_751732.1 CDS Sfri_3055 NC_008345.1 3662711 3663547 D KEGG: mac:MA2435 H(+)-transporting ATP synthase, subunit B; H(+)-transporting ATP synthase subunit B 3662711..3663547 Shewanella frigidimarina NCIMB 400 4279959 YP_751733.1 CDS Sfri_3056 NC_008345.1 3663531 3665084 D produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 3663531..3665084 Shewanella frigidimarina NCIMB 400 4279960 YP_751734.1 CDS Sfri_3057 NC_008345.1 3665081 3665959 D PFAM: H+transporting two-sector ATPase, gamma subunit; KEGG: rfr:Rfer_1169 H+-transporting two-sector ATPase, gamma subunit; H+transporting two-sector ATPase subunit gamma 3665081..3665959 Shewanella frigidimarina NCIMB 400 4279961 YP_751735.1 CDS Sfri_3058 NC_008345.1 3666276 3667049 D PFAM: MltA-interacting MipA family protein; KEGG: vch:VC1318 outer membrane protein OmpV; MltA-interacting MipA family protein 3666276..3667049 Shewanella frigidimarina NCIMB 400 4279962 YP_751736.1 CDS Sfri_3059 NC_008345.1 3667069 3667527 D KEGG: ccr:CC0125 hypothetical protein; hypothetical protein 3667069..3667527 Shewanella frigidimarina NCIMB 400 4279963 YP_751737.1 CDS Sfri_3060 NC_008345.1 3667715 3668713 D KEGG: vvu:VV21138 hypothetical protein; hypothetical protein 3667715..3668713 Shewanella frigidimarina NCIMB 400 4279964 YP_751738.1 CDS Sfri_3061 NC_008345.1 3668852 3670162 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sde:Sde_0291 helix-turn-helix, AraC type; periplasmic sensor signal transduction histidine kinase complement(3668852..3670162) Shewanella frigidimarina NCIMB 400 4279965 YP_751739.1 CDS Sfri_3062 NC_008345.1 3670159 3670863 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cps:CPS_1426 transcriptional regulatory protein RstA; two component transcriptional regulator, winged helix family protein complement(3670159..3670863) Shewanella frigidimarina NCIMB 400 4279966 YP_751740.1 CDS Sfri_3063 NC_008345.1 3670866 3671285 R KEGG: sde:Sde_0289 hypothetical protein; hypothetical protein complement(3670866..3671285) Shewanella frigidimarina NCIMB 400 4279967 YP_751741.1 CDS Sfri_3064 NC_008345.1 3671294 3672154 R PFAM: MltA-interacting MipA family protein; KEGG: sde:Sde_0288 hypothetical protein; MltA-interacting MipA family protein complement(3671294..3672154) Shewanella frigidimarina NCIMB 400 4279968 YP_751742.1 CDS Sfri_3065 NC_008345.1 3672397 3672819 R PFAM: regulatory protein, MarR; KEGG: ppr:PBPRB1248 hypothetical transcriptional regulator, MarR family; transcriptional regulator, MarR family protein complement(3672397..3672819) Shewanella frigidimarina NCIMB 400 4279969 YP_751743.1 CDS Sfri_3066 NC_008345.1 3672919 3673365 D hypothetical protein 3672919..3673365 Shewanella frigidimarina NCIMB 400 4279970 YP_751744.1 CDS Sfri_3067 NC_008345.1 3673410 3673847 D PFAM: Cupin 2, conserved barrel domain protein; KEGG: cps:CPS_4882 hypothetical protein; cupin 3673410..3673847 Shewanella frigidimarina NCIMB 400 4279971 YP_751745.1 CDS Sfri_3068 NC_008345.1 3674357 3675658 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1383 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 3674357..3675658 Shewanella frigidimarina NCIMB 400 4279972 YP_751746.1 CDS Sfri_3069 NC_008345.1 3675784 3676419 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO1381 hypothetical protein; redoxin domain-containing protein 3675784..3676419 Shewanella frigidimarina NCIMB 400 4279973 YP_751747.1 CDS purT NC_008345.1 3676745 3677935 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 3676745..3677935 Shewanella frigidimarina NCIMB 400 4279974 YP_751748.1 CDS Sfri_3072 NC_008345.1 3678517 3679470 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO3631 glycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(3678517..3679470) Shewanella frigidimarina NCIMB 400 4279975 YP_751749.1 CDS djlA NC_008345.1 3679517 3680290 R functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein complement(3679517..3680290) Shewanella frigidimarina NCIMB 400 4279976 YP_751750.1 CDS Sfri_3074 NC_008345.1 3680350 3681048 R PFAM: Nucleotidyl transferase; KEGG: son:SO3634 nucleotidyltransferase family protein; nucleotidyl transferase complement(3680350..3681048) Shewanella frigidimarina NCIMB 400 4279977 YP_751751.1 CDS Sfri_3075 NC_008345.1 3681045 3682073 R PFAM: aminoglycoside phosphotransferase; KEGG: son:SO3635 hypothetical phosphotransferase; aminoglycoside phosphotransferase complement(3681045..3682073) Shewanella frigidimarina NCIMB 400 4279978 YP_751752.1 CDS Sfri_3076 NC_008345.1 3682217 3684517 D PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: son:SO3636 organic solvent tolerance protein; organic solvent tolerance protein 3682217..3684517 Shewanella frigidimarina NCIMB 400 4279979 YP_751753.1 CDS Sfri_3077 NC_008345.1 3684662 3685966 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO3637 survival protein surA; PpiC-type peptidyl-prolyl cis-trans isomerase 3684662..3685966 Shewanella frigidimarina NCIMB 400 4279980 YP_751754.1 CDS pdxA NC_008345.1 3685976 3686959 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3685976..3686959 Shewanella frigidimarina NCIMB 400 4279981 YP_751755.1 CDS ksgA NC_008345.1 3686969 3687775 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3686969..3687775 Shewanella frigidimarina NCIMB 400 4279982 YP_751756.1 CDS apaG NC_008345.1 3687824 3688204 D protein associated with Co2+ and Mg2+ efflux; ApaG protein 3687824..3688204 Shewanella frigidimarina NCIMB 400 4279983 YP_751757.1 CDS apaH NC_008345.1 3688208 3689026 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 3688208..3689026 Shewanella frigidimarina NCIMB 400 4279984 YP_751758.1 CDS Sfri_3082 NC_008345.1 3689181 3691202 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3642 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3689181..3691202 Shewanella frigidimarina NCIMB 400 4279985 YP_751759.1 CDS Sfri_3083 NC_008345.1 3691675 3692061 R KEGG: son:SO3645 hypothetical protein; hypothetical protein complement(3691675..3692061) Shewanella frigidimarina NCIMB 400 4279986 YP_751760.1 CDS Sfri_3084 NC_008345.1 3692159 3692641 R PFAM: dihydrofolate reductase region; KEGG: son:SO3646 dihydrofolate reductase; dihydrofolate reductase complement(3692159..3692641) Shewanella frigidimarina NCIMB 400 4279987 YP_751761.1 CDS Sfri_3085 NC_008345.1 3692661 3693131 R KEGG: son:SO3647 hypothetical protein; hypothetical protein complement(3692661..3693131) Shewanella frigidimarina NCIMB 400 4279988 YP_751762.1 CDS Sfri_3086 NC_008345.1 3693131 3693889 R PFAM: protein of unknown function DUF1212; KEGG: son:SO3648 hypothetical protein; hypothetical protein complement(3693131..3693889) Shewanella frigidimarina NCIMB 400 4279989 YP_751763.1 CDS obgE NC_008345.1 3693910 3695076 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3693910..3695076) Shewanella frigidimarina NCIMB 400 4279990 YP_751764.1 CDS rpmA NC_008345.1 3695277 3695531 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3695277..3695531) Shewanella frigidimarina NCIMB 400 4279991 YP_751765.1 CDS rplU NC_008345.1 3695548 3695859 R PFAM: ribosomal protein L21; KEGG: son:SO3652 ribosomal protein L21; 50S ribosomal protein L21 complement(3695548..3695859) Shewanella frigidimarina NCIMB 400 4279992 YP_751766.1 CDS Sfri_3090 NC_008345.1 3696263 3697234 D PFAM: Polyprenyl synthetase; KEGG: son:SO3653 octaprenyl-diphosphate synthase; trans-hexaprenyltranstransferase 3696263..3697234 Shewanella frigidimarina NCIMB 400 4279993 YP_751767.1 CDS Sfri_3091 NC_008345.1 3697343 3698005 R TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: son:SO3654 uracil-DNA glycosylase; uracil-DNA glycosylase complement(3697343..3698005) Shewanella frigidimarina NCIMB 400 4279994 YP_751768.1 CDS Sfri_3092 NC_008345.1 3698085 3698645 D PFAM: methylation site containing protein; KEGG: son:SO3655 pilin, putative; methylation site containing protein 3698085..3698645 Shewanella frigidimarina NCIMB 400 4279995 YP_751769.1 CDS Sfri_3093 NC_008345.1 3698716 3699042 D KEGG: son:SO3656 hypothetical protein; hypothetical protein 3698716..3699042 Shewanella frigidimarina NCIMB 400 4279996 YP_751770.1 CDS Sfri_3094 NC_008345.1 3699238 3699855 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO3657 transporter, LysE family; lysine exporter protein LysE/YggA complement(3699238..3699855) Shewanella frigidimarina NCIMB 400 4279997 YP_751771.1 CDS Sfri_3095 NC_008345.1 3699992 3700525 D KEGG: son:SO3659 thiol:disulfide interchange protein, putative; thiol:disulfide interchange protein, putative 3699992..3700525 Shewanella frigidimarina NCIMB 400 4279998 YP_751772.1 CDS Sfri_3096 NC_008345.1 3700647 3703202 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAb0299 putative TonB-dependent outer membrane receptor; TonB-dependent receptor complement(3700647..3703202) Shewanella frigidimarina NCIMB 400 4279999 YP_751773.1 CDS Sfri_3097 NC_008345.1 3703662 3705260 D PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO3664 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 3703662..3705260 Shewanella frigidimarina NCIMB 400 4280000 YP_751774.1 CDS Sfri_3098 NC_008345.1 3705496 3707316 R KEGG: son:SO3665 ABC transporter, ATP-binding/permease protein, putative; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein complement(3705496..3707316) Shewanella frigidimarina NCIMB 400 4280001 YP_751775.1 CDS Sfri_3099 NC_008345.1 3707442 3707960 D PFAM: methylation site containing protein; KEGG: ppr:PBPRA3276 putative MSHA pilin protein MshA; methylation site containing protein 3707442..3707960 Shewanella frigidimarina NCIMB 400 4280002 YP_751776.1 CDS Sfri_3100 NC_008345.1 3707989 3708399 R KEGG: cps:CPS_4848 hypothetical protein; hypothetical protein complement(3707989..3708399) Shewanella frigidimarina NCIMB 400 4280003 YP_751777.1 CDS Sfri_3101 NC_008345.1 3708731 3709909 D PFAM: methyltransferase small; Methyltransferase type 12; KEGG: son:SO1097 putative ribosomal RNA small subunit methyltransferase D; rRNA (guanine-N(2)-)-methyltransferase 3708731..3709909 Shewanella frigidimarina NCIMB 400 4280004 YP_751778.1 CDS Sfri_3102 NC_008345.1 3710884 3711624 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pha:PSHAa1739 regulatory protein, GntR; GntR family transcriptional regulator complement(3710884..3711624) Shewanella frigidimarina NCIMB 400 4280005 YP_751779.1 CDS Sfri_3103 NC_008345.1 3712472 3714763 D KEGG: pha:PSHAa1749 alginate lyase precursor; Poly(beta-D-mannuronate) lyase 3712472..3714763 Shewanella frigidimarina NCIMB 400 4280006 YP_751780.1 CDS Sfri_3104 NC_008345.1 3714760 3717042 D PFAM: Heparinase II/III family protein; KEGG: pha:PSHAa1748 chondroitin AC/alginate lyase; heparinase II/III family protein 3714760..3717042 Shewanella frigidimarina NCIMB 400 4280007 YP_751781.1 CDS Sfri_3105 NC_008345.1 3717074 3717421 D PFAM: Cupin 2, conserved barrel domain protein; KEGG: pha:PSHAa1747 pectin degradation protein (sugar phosphate isomerase); cupin 3717074..3717421 Shewanella frigidimarina NCIMB 400 4280008 YP_751782.1 CDS Sfri_3106 NC_008345.1 3717418 3718704 D PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_3282 putative hexuronate transporter; major facilitator transporter 3717418..3718704 Shewanella frigidimarina NCIMB 400 4280009 YP_751783.1 CDS Sfri_3107 NC_008345.1 3718707 3719648 D PFAM: PfkB domain protein; KEGG: pha:PSHAa1745 ketodeoxygluconokinase; ribokinase-like domain-containing protein 3718707..3719648 Shewanella frigidimarina NCIMB 400 4280010 YP_751784.1 CDS Sfri_3108 NC_008345.1 3719835 3720608 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0151 hypothetical SAM-dependent methyltransferase; methyltransferase type 12 3719835..3720608 Shewanella frigidimarina NCIMB 400 4280011 YP_751785.1 CDS Sfri_3109 NC_008345.1 3720639 3721517 R KEGG: son:SO3807 sterol desaturase family protein; sterol desaturase family protein complement(3720639..3721517) Shewanella frigidimarina NCIMB 400 4280012 YP_751786.1 CDS Sfri_3110 NC_008345.1 3721753 3722820 R KEGG: son:SO3808 hypothetical protein; hypothetical protein complement(3721753..3722820) Shewanella frigidimarina NCIMB 400 4280013 YP_751787.1 CDS Sfri_3111 NC_008345.1 3723050 3723616 D KEGG: son:SO3811 lipoprotein, putative; putative lipoprotein 3723050..3723616 Shewanella frigidimarina NCIMB 400 4280014 YP_751788.1 CDS Sfri_3112 NC_008345.1 3723676 3724260 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO3812 peptidyl-prolyl cis-trans isomerase A; peptidyl-prolyl cis-trans isomerase, cyclophilin type 3723676..3724260 Shewanella frigidimarina NCIMB 400 4280015 YP_751789.1 CDS Sfri_3113 NC_008345.1 3724588 3724923 D KEGG: son:SO3813 hypothetical protein; hypothetical protein 3724588..3724923 Shewanella frigidimarina NCIMB 400 4280016 YP_751790.1 CDS Sfri_3114 NC_008345.1 3725052 3726479 D PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3814 AmpG protein, putative; major facilitator transporter 3725052..3726479 Shewanella frigidimarina NCIMB 400 4280017 YP_751791.1 CDS Sfri_3115 NC_008345.1 3726903 3727604 D specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3726903..3727604 Shewanella frigidimarina NCIMB 400 4280018 YP_751792.1 CDS Sfri_3116 NC_008345.1 3727802 3728605 R PFAM: polysaccharide deacetylase; KEGG: cps:CPS_3729 polysaccharide deacetylase family protein; polysaccharide deacetylase complement(3727802..3728605) Shewanella frigidimarina NCIMB 400 4280019 YP_751793.1 CDS Sfri_3117 NC_008345.1 3728931 3729557 D KEGG: cps:CPS_1552 hypothetical protein; hypothetical protein 3728931..3729557 Shewanella frigidimarina NCIMB 400 4280020 YP_751794.1 CDS Sfri_3118 NC_008345.1 3729673 3730380 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ppr:PBPRA1226 hypothetical protein; lysine exporter protein LysE/YggA complement(3729673..3730380) Shewanella frigidimarina NCIMB 400 4280021 YP_751795.1 CDS Sfri_3119 NC_008345.1 3730607 3730855 R KEGG: ppr:PBPRA1944 hypothetical protein; hypothetical protein complement(3730607..3730855) Shewanella frigidimarina NCIMB 400 4280022 YP_751796.1 CDS Sfri_3120 NC_008345.1 3731139 3733397 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: sde:Sde_1409 signal transduction histidine kinase-like; multi-sensor hybrid histidine kinase complement(3731139..3733397) Shewanella frigidimarina NCIMB 400 4280023 YP_751797.1 CDS Sfri_3121 NC_008345.1 3733384 3734193 R KEGG: mag:amb1049 ABC-type phosphate/phosphonate transport system; ABC-type phosphate/phosphonate transport system complement(3733384..3734193) Shewanella frigidimarina NCIMB 400 4280024 YP_751798.1 CDS Sfri_3122 NC_008345.1 3734625 3736898 D KEGG: ilo:IL1414 catalase; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 3734625..3736898 Shewanella frigidimarina NCIMB 400 4280025 YP_751799.1 CDS Sfri_3123 NC_008345.1 3737317 3738066 R hypothetical protein complement(3737317..3738066) Shewanella frigidimarina NCIMB 400 4280026 YP_751800.1 CDS Sfri_3124 NC_008345.1 3738593 3739840 D PFAM: beta-lactamase; KEGG: sil:SPO0810 6-aminohexanoate-dimer hydrolase, putative; 6-aminohexanoate-dimer hydrolase 3738593..3739840 Shewanella frigidimarina NCIMB 400 4280027 YP_751801.1 CDS Sfri_3125 NC_008345.1 3740059 3740511 R KEGG: son:SO1432 hypothetical protein; hypothetical protein complement(3740059..3740511) Shewanella frigidimarina NCIMB 400 4280028 YP_751802.1 CDS Sfri_3126 NC_008345.1 3740574 3741233 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO1431 hypothetical protein; cytoplasmic chaperone TorD family protein complement(3740574..3741233) Shewanella frigidimarina NCIMB 400 4280029 YP_751803.1 CDS Sfri_3127 NC_008345.1 3741318 3741953 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1430 anaerobic dimethyl sulfoxide reductase, B subunit; 4Fe-4S ferredoxin complement(3741318..3741953) Shewanella frigidimarina NCIMB 400 4280030 YP_751804.1 CDS Sfri_3128 NC_008345.1 3741966 3744395 R TIGRFAM: Twin-arginine translocation pathway signal; anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO1429 anaerobic dimethyl sulfoxide reductase, A subunit; anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein complement(3741966..3744395) Shewanella frigidimarina NCIMB 400 4280031 YP_751805.1 CDS Sfri_3129 NC_008345.1 3744436 3746442 R KEGG: son:SO1428 outer membrane protein; outer membrane protein complement(3744436..3746442) Shewanella frigidimarina NCIMB 400 4280032 YP_751806.1 CDS Sfri_3130 NC_008345.1 3746458 3747411 R TIGRFAM: cytochrome C family protein; KEGG: son:SO1427 decaheme cytochrome c; cytochrome C family protein complement(3746458..3747411) Shewanella frigidimarina NCIMB 400 4280033 YP_751807.1 CDS Sfri_3131 NC_008345.1 3748558 3748992 D KEGG: vvy:VV1376 hypothetical protein; hypothetical protein 3748558..3748992 Shewanella frigidimarina NCIMB 400 4280034 YP_751808.1 CDS Sfri_3132 NC_008345.1 3749009 3750160 D PFAM: lipase, class 3; KEGG: vvy:VVA0214 predicted lipase; lipase, class 3 3749009..3750160 Shewanella frigidimarina NCIMB 400 4280035 YP_751809.1 CDS Sfri_3133 NC_008345.1 3750495 3750932 D KEGG: vvy:VV1376 hypothetical protein; hypothetical protein 3750495..3750932 Shewanella frigidimarina NCIMB 400 4280036 YP_751810.1 CDS Sfri_3134 NC_008345.1 3751405 3751857 D hypothetical protein 3751405..3751857 Shewanella frigidimarina NCIMB 400 4280037 YP_751811.1 CDS Sfri_3135 NC_008345.1 3751933 3752358 R PFAM: CBS domain containing protein; KEGG: son:SO0805 CBS domain protein; hypothetical protein complement(3751933..3752358) Shewanella frigidimarina NCIMB 400 4280038 YP_751812.1 CDS Sfri_3136 NC_008345.1 3752448 3753182 R KEGG: cps:CPS_3694 hypothetical protein; hypothetical protein complement(3752448..3753182) Shewanella frigidimarina NCIMB 400 4280039 YP_751813.1 CDS Sfri_3137 NC_008345.1 3753450 3755645 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(3753450..3755645) Shewanella frigidimarina NCIMB 400 4280040 YP_751814.1 CDS Sfri_3138 NC_008345.1 3755917 3756867 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: hch:HCH_02324 transcriptional regulator; transcriptional regulator, LysR family protein complement(3755917..3756867) Shewanella frigidimarina NCIMB 400 4280041 YP_751815.1 CDS Sfri_3139 NC_008345.1 3756977 3758557 D Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 3756977..3758557 Shewanella frigidimarina NCIMB 400 4280042 YP_751816.1 CDS Sfri_3140 NC_008345.1 3759074 3759976 D KEGG: son:SO0784 hypothetical protein; hypothetical protein 3759074..3759976 Shewanella frigidimarina NCIMB 400 4280043 YP_751817.1 CDS Sfri_3141 NC_008345.1 3760091 3760789 D hypothetical protein 3760091..3760789 Shewanella frigidimarina NCIMB 400 4280044 YP_751818.1 CDS Sfri_3142 NC_008345.1 3760767 3761753 D TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; KEGG: mth:MTH830 hypothetical protein; beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein 3760767..3761753 Shewanella frigidimarina NCIMB 400 4280045 YP_751819.1 CDS Sfri_3143 NC_008345.1 3761746 3762897 D hypothetical protein 3761746..3762897 Shewanella frigidimarina NCIMB 400 4280046 YP_751820.1 CDS Sfri_3144 NC_008345.1 3762942 3763253 D PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 3762942..3763253 Shewanella frigidimarina NCIMB 400 4280047 YP_751821.1 CDS Sfri_3145 NC_008345.1 3763307 3764119 D PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 3763307..3764119 Shewanella frigidimarina NCIMB 400 4280048 YP_751822.1 CDS Sfri_3147 NC_008345.1 3765462 3766655 D PFAM: transposase, IS4 family protein; KEGG: ret:RHE_CH01332 probable insertion sequence transposase protein, IS10; transposase, IS4 family protein 3765462..3766655 Shewanella frigidimarina NCIMB 400 4280049 YP_751823.1 CDS Sfri_3148 NC_008345.1 3766755 3766997 D hypothetical protein 3766755..3766997 Shewanella frigidimarina NCIMB 400 4280050 YP_751824.1 CDS Sfri_3149 NC_008345.1 3767594 3770482 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(3767594..3770482) Shewanella frigidimarina NCIMB 400 4280051 YP_751825.1 CDS Sfri_3150 NC_008345.1 3770722 3771111 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(3770722..3771111) Shewanella frigidimarina NCIMB 400 4280052 YP_751826.1 CDS gcvT NC_008345.1 3771194 3772288 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(3771194..3772288) Shewanella frigidimarina NCIMB 400 4280053 YP_751827.1 CDS Sfri_3152 NC_008345.1 3772508 3773731 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0778 oxidoreductase, FAD-binding, UbiH/Coq6 family; ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein complement(3772508..3773731) Shewanella frigidimarina NCIMB 400 4280054 YP_751828.1 CDS Sfri_3153 NC_008345.1 3773756 3775030 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0777 2-octaprenyl-6-methoxyphenol hydroxylase; 2-polyprenyl-6-methoxyphenol 4-hydroxylase complement(3773756..3775030) Shewanella frigidimarina NCIMB 400 4280055 YP_751829.1 CDS Sfri_3154 NC_008345.1 3775059 3775634 R TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: son:SO0776 hypothetical protein; yecA family protein complement(3775059..3775634) Shewanella frigidimarina NCIMB 400 4280056 YP_751830.1 CDS Sfri_3155 NC_008345.1 3775847 3776146 D PFAM: protein of unknown function DUF710; KEGG: son:SO0775 hypothetical protein; hypothetical protein 3775847..3776146 Shewanella frigidimarina NCIMB 400 4280057 YP_751831.1 CDS Sfri_3156 NC_008345.1 3776712 3778169 D KEGG: cpe:CPE1877 probable glycerophosphodiester phosphodiesterase; glycerophosphoryl diester phosphodiesterase-like protein 3776712..3778169 Shewanella frigidimarina NCIMB 400 4280058 YP_751832.1 CDS Sfri_3157 NC_008345.1 3778220 3780682 D hypothetical protein 3778220..3780682 Shewanella frigidimarina NCIMB 400 4280059 YP_751833.1 CDS Sfri_3158 NC_008345.1 3780786 3782678 D KEGG: cfa:484672 similar to fls485; hypothetical protein 3780786..3782678 Shewanella frigidimarina NCIMB 400 4280060 YP_751834.1 CDS Sfri_3159 NC_008345.1 3782848 3783543 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: son:SO0774 5-formyltetrahydrofolate cyclo-ligase family protein; 5-formyltetrahydrofolate cyclo-ligase 3782848..3783543 Shewanella frigidimarina NCIMB 400 4280061 YP_751835.1 CDS Sfri_3160 NC_008345.1 3783911 3785218 R KEGG: son:SO1095 O-acetylhomoserine (thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(3783911..3785218) Shewanella frigidimarina NCIMB 400 4280062 YP_751836.1 CDS Sfri_3161 NC_008345.1 3785348 3786106 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: son:SO0772 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase complement(3785348..3786106) Shewanella frigidimarina NCIMB 400 4280063 YP_751837.1 CDS folE NC_008345.1 3786334 3787002 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(3786334..3787002) Shewanella frigidimarina NCIMB 400 4280064 YP_751838.1 CDS folX NC_008345.1 3787029 3787391 R catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase complement(3787029..3787391) Shewanella frigidimarina NCIMB 400 4280065 YP_751839.1 CDS Sfri_3164 NC_008345.1 3787581 3787970 D PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: son:SO0771 hypothetical protein; thiol-disulfide oxidoreductase 3787581..3787970 Shewanella frigidimarina NCIMB 400 4280066 YP_751840.1 CDS Sfri_3165 NC_008345.1 3787982 3788866 D KEGG: cps:CPS_0516 oxidoreductase, short-chain dehydrogenase/reductase family; hypothetical protein 3787982..3788866 Shewanella frigidimarina NCIMB 400 4280067 YP_751841.1 CDS Sfri_3166 NC_008345.1 3789174 3789974 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cps:CPS_0943 D-beta-hydroxybutyrate dehydrogenase; short-chain dehydrogenase/reductase SDR 3789174..3789974 Shewanella frigidimarina NCIMB 400 4280068 YP_751842.1 CDS Sfri_3167 NC_008345.1 3790089 3791021 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: cps:CPS_0941 putative lipase; alpha/beta hydrolase domain-containing protein complement(3790089..3791021) Shewanella frigidimarina NCIMB 400 4280069 YP_751843.1 CDS Sfri_3168 NC_008345.1 3791021 3792193 R PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0940 major facilitator family transporter; major facilitator transporter complement(3791021..3792193) Shewanella frigidimarina NCIMB 400 4280070 YP_751844.1 CDS Sfri_3169 NC_008345.1 3792362 3795868 D TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cps:CPS_0939 sensory box sensor histidine kinase/response regulator; multi-sensor hybrid histidine kinase 3792362..3795868 Shewanella frigidimarina NCIMB 400 4280071 YP_751845.1 CDS Sfri_3170 NC_008345.1 3795996 3796679 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: cps:CPS_0937 DNA-binding response regulator, LuxR family; two component transcriptional regulator, LuxR family protein complement(3795996..3796679) Shewanella frigidimarina NCIMB 400 4280072 YP_751846.1 CDS Sfri_3171 NC_008345.1 3796793 3799072 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa2947 TonB-dependent receptor; TonB-dependent receptor complement(3796793..3799072) Shewanella frigidimarina NCIMB 400 4280073 YP_751847.1 CDS Sfri_3172 NC_008345.1 3799290 3800192 R TIGRFAM: esterase, PHB depolymerase family; KEGG: cps:CPS_0935 putative polyhydroxyalkanoate depolymerase; esterase, PHB depolymerase family protein complement(3799290..3800192) Shewanella frigidimarina NCIMB 400 4280074 YP_751848.1 CDS Sfri_3173 NC_008345.1 3800557 3801492 R oxidizes malate to oxaloacetate; malate dehydrogenase complement(3800557..3801492) Shewanella frigidimarina NCIMB 400 4280075 YP_751849.1 CDS Sfri_3174 NC_008345.1 3802023 3802472 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0920 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3802023..3802472 Shewanella frigidimarina NCIMB 400 4280076 YP_751850.1 CDS Sfri_3175 NC_008345.1 3802590 3803378 R PFAM: ribonuclease H; KEGG: ppr:PBPRA1876 hypothetical ribonuclease HI; ribonuclease H complement(3802590..3803378) Shewanella frigidimarina NCIMB 400 4280077 YP_751851.1 CDS Sfri_3176 NC_008345.1 3803553 3804356 R KEGG: son:SO0150 lipoprotein, putative; putative lipoprotein complement(3803553..3804356) Shewanella frigidimarina NCIMB 400 4280078 YP_751852.1 CDS Sfri_3177 NC_008345.1 3804634 3805206 D pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 3804634..3805206 Shewanella frigidimarina NCIMB 400 4280079 YP_751853.1 CDS Sfri_3178 NC_008345.1 3805199 3805720 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0916 putative acetyltransferase; N-acetyltransferase GCN5 3805199..3805720 Shewanella frigidimarina NCIMB 400 4280080 YP_751854.1 CDS Sfri_3179 NC_008345.1 3805792 3807747 R SMART: Ankyrin; ankyrin complement(3805792..3807747) Shewanella frigidimarina NCIMB 400 4280081 YP_751855.1 CDS Sfri_3180 NC_008345.1 3807928 3808968 D PFAM: aldo/keto reductase; KEGG: son:SO0900 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 3807928..3808968 Shewanella frigidimarina NCIMB 400 4280082 YP_751856.1 CDS Sfri_3181 NC_008345.1 3809081 3810370 D TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; KEGG: son:SO3789 aminotransferase, class V; SufS subfamily cysteine desulfurase 3809081..3810370 Shewanella frigidimarina NCIMB 400 4280083 YP_751857.1 CDS Sfri_3182 NC_008345.1 3810436 3810891 D PFAM: Fe-S metabolism associated SufE; KEGG: son:SO3790 hypothetical protein; Fe-S metabolism associated SufE 3810436..3810891 Shewanella frigidimarina NCIMB 400 4280084 YP_751858.1 CDS Sfri_3183 NC_008345.1 3810919 3812085 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase M19, renal dipeptidase; KEGG: son:SO3791 renal dipeptidase family protein; twin-arginine translocation pathway signal 3810919..3812085 Shewanella frigidimarina NCIMB 400 4280085 YP_751859.1 CDS Sfri_3184 NC_008345.1 3812235 3812858 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase complement(3812235..3812858) Shewanella frigidimarina NCIMB 400 4280086 YP_751860.1 CDS Sfri_3185 NC_008345.1 3812904 3814628 R PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vpa:VP0295 putative sodium/sulfate symporter; TrkA domain-containing protein complement(3812904..3814628) Shewanella frigidimarina NCIMB 400 4280087 YP_751861.1 CDS cysN NC_008345.1 3814632 3816074 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 complement(3814632..3816074) Shewanella frigidimarina NCIMB 400 4280088 YP_751862.1 CDS Sfri_3187 NC_008345.1 3816135 3817043 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(3816135..3817043) Shewanella frigidimarina NCIMB 400 4280089 YP_751863.1 CDS Sfri_3188 NC_008345.1 3817097 3817915 R TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO3728 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase complement(3817097..3817915) Shewanella frigidimarina NCIMB 400 4280090 YP_751864.1 CDS Sfri_3189 NC_008345.1 3818182 3819090 D PFAM: phospholipase A1; KEGG: hch:HCH_01113 outer membrane phospholipase A; phospholipase A(1) 3818182..3819090 Shewanella frigidimarina NCIMB 400 4280091 YP_751865.1 CDS Sfri_3190 NC_008345.1 3819254 3820978 R KEGG: son:SO3733 hypothetical protein; hypothetical protein complement(3819254..3820978) Shewanella frigidimarina NCIMB 400 4280092 YP_751866.1 CDS Sfri_3191 NC_008345.1 3821859 3822650 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(3821859..3822650) Shewanella frigidimarina NCIMB 400 4280093 YP_751867.1 CDS Sfri_3192 NC_008345.1 3822643 3824334 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(3822643..3824334) Shewanella frigidimarina NCIMB 400 4280094 YP_751868.1 CDS Sfri_3193 NC_008345.1 3824413 3826203 R TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: son:SO3738 sulfite reductase (NADPH) flavoprotein alpha-component; sulfite reductase (NADPH) flavoprotein, alpha chain complement(3824413..3826203) Shewanella frigidimarina NCIMB 400 4280095 YP_751869.1 CDS pntA NC_008345.1 3826670 3828199 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 3826670..3828199 Shewanella frigidimarina NCIMB 400 4280096 YP_751870.1 CDS pntB NC_008345.1 3828211 3829695 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 3828211..3829695 Shewanella frigidimarina NCIMB 400 4280097 YP_751871.1 CDS Sfri_3196 NC_008345.1 3829799 3830815 D KEGG: chy:CHY_1906 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 3829799..3830815 Shewanella frigidimarina NCIMB 400 4280098 YP_751872.1 CDS Sfri_3197 NC_008345.1 3831570 3832268 D KEGG: son:SO4011 hypothetical protein; hypothetical protein 3831570..3832268 Shewanella frigidimarina NCIMB 400 4280099 YP_751873.1 CDS Sfri_3198 NC_008345.1 3832492 3832968 R PFAM: regulatory protein, TetR; KEGG: son:SO3743 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein complement(3832492..3832968) Shewanella frigidimarina NCIMB 400 4280100 YP_751874.1 CDS Sfri_3199 NC_008345.1 3833203 3834036 R KEGG: son:SO3744 hypothetical protein; hypothetical protein complement(3833203..3834036) Shewanella frigidimarina NCIMB 400 4280101 YP_751875.1 CDS Sfri_3200 NC_008345.1 3834187 3835617 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3834187..3835617) Shewanella frigidimarina NCIMB 400 4280102 YP_751876.1 CDS Sfri_3201 NC_008345.1 3835717 3836649 D TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: son:SO3746 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 3835717..3836649 Shewanella frigidimarina NCIMB 400 4280103 YP_751877.1 CDS Sfri_3202 NC_008345.1 3836815 3837195 R hypothetical protein complement(3836815..3837195) Shewanella frigidimarina NCIMB 400 4280104 YP_751878.1 CDS Sfri_3203 NC_008345.1 3837327 3837998 R PFAM: nitroreductase; KEGG: cps:CPS_3676 nitroreductase family protein; nitroreductase complement(3837327..3837998) Shewanella frigidimarina NCIMB 400 4280105 YP_751879.1 CDS Sfri_3204 NC_008345.1 3838190 3838870 D KEGG: bba:Bd1175 nucleoside-diphosphate-sugar epimerase; nucleoside-diphosphate-sugar epimerase 3838190..3838870 Shewanella frigidimarina NCIMB 400 4280106 YP_751880.1 CDS Sfri_3205 NC_008345.1 3838982 3839155 D KEGG: son:SO3777 hypothetical protein; hypothetical protein 3838982..3839155 Shewanella frigidimarina NCIMB 400 4280107 YP_751881.1 CDS Sfri_3206 NC_008345.1 3839332 3840549 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(3839332..3840549) Shewanella frigidimarina NCIMB 400 4280108 YP_751882.1 CDS Sfri_3207 NC_008345.1 3840574 3841182 R Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E complement(3840574..3841182) Shewanella frigidimarina NCIMB 400 4280109 YP_751883.1 CDS Sfri_3208 NC_008345.1 3841192 3841812 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(3841192..3841812) Shewanella frigidimarina NCIMB 400 4280110 YP_751884.1 CDS Sfri_3209 NC_008345.1 3841813 3842580 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(3841813..3842580) Shewanella frigidimarina NCIMB 400 4280111 YP_751885.1 CDS Sfri_3210 NC_008345.1 3842570 3843784 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(3842570..3843784) Shewanella frigidimarina NCIMB 400 4280112 YP_751886.1 CDS Sfri_3211 NC_008345.1 3843784 3845163 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(3843784..3845163) Shewanella frigidimarina NCIMB 400 4280113 YP_751887.2 CDS Sfri_3212 NC_008345.1 3845509 3847212 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(3845509..3847212) Shewanella frigidimarina NCIMB 400 4280114 YP_751888.1 CDS Sfri_3213 NC_008345.1 3847254 3849044 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(3847254..3849044) Shewanella frigidimarina NCIMB 400 4280115 YP_751889.1 CDS Sfri_3214 NC_008345.1 3849366 3850424 R KEGG: son:SO3782 hypothetical protein; hypothetical protein complement(3849366..3850424) Shewanella frigidimarina NCIMB 400 4280116 YP_751890.1 CDS Sfri_3215 NC_008345.1 3850761 3852194 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO3783 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 3850761..3852194 Shewanella frigidimarina NCIMB 400 4280117 YP_751891.1 CDS Sfri_3216 NC_008345.1 3852309 3853712 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(3852309..3853712) Shewanella frigidimarina NCIMB 400 4280118 YP_751892.1 CDS Sfri_3217 NC_008345.1 3854038 3854904 R PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: son:SO0895 pirin family protein; pirin domain-containing protein complement(3854038..3854904) Shewanella frigidimarina NCIMB 400 4280119 YP_751893.1 CDS Sfri_3218 NC_008345.1 3855126 3856022 D KEGG: son:SO2446 hypothetical protein; hypothetical protein 3855126..3856022 Shewanella frigidimarina NCIMB 400 4280120 YP_751894.1 CDS Sfri_3219 NC_008345.1 3856208 3857758 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: vch:VCA0988 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor complement(3856208..3857758) Shewanella frigidimarina NCIMB 400 4280121 YP_751895.1 CDS Sfri_3220 NC_008345.1 3858219 3858701 R KEGG: vpa:VP0089 hypothetical protein; hypothetical protein complement(3858219..3858701) Shewanella frigidimarina NCIMB 400 4280122 YP_751896.1 CDS Sfri_3221 NC_008345.1 3858726 3858974 R KEGG: vpa:VP0088 hypothetical protein; hypothetical protein complement(3858726..3858974) Shewanella frigidimarina NCIMB 400 4280123 YP_751897.1 CDS Sfri_3222 NC_008345.1 3859382 3860971 R PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO0449 hypothetical protein; PepSY-associated TM helix domain-containing protein complement(3859382..3860971) Shewanella frigidimarina NCIMB 400 4280124 YP_751898.1 CDS Sfri_3223 NC_008345.1 3860968 3861270 R KEGG: son:SO0448 hypothetical protein; hypothetical protein complement(3860968..3861270) Shewanella frigidimarina NCIMB 400 4280125 YP_751899.1 CDS Sfri_3224 NC_008345.1 3861267 3861539 R KEGG: son:SO0447 hypothetical protein; hypothetical protein complement(3861267..3861539) Shewanella frigidimarina NCIMB 400 4280126 YP_751900.1 CDS Sfri_3225 NC_008345.1 3861727 3863874 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bpa:BPP0079 ferric siderophore receptor; TonB-dependent siderophore receptor complement(3861727..3863874) Shewanella frigidimarina NCIMB 400 4280127 YP_751901.1 CDS Sfri_3226 NC_008345.1 3864443 3864817 D KEGG: son:SO1940 hypothetical protein; hypothetical protein 3864443..3864817 Shewanella frigidimarina NCIMB 400 4280128 YP_751902.1 CDS Sfri_3227 NC_008345.1 3864994 3866073 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rru:Rru_A3391 putative diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(3864994..3866073) Shewanella frigidimarina NCIMB 400 4280129 YP_751903.1 CDS Sfri_3228 NC_008345.1 3866399 3866650 D KEGG: ppr:PBPRA1285 hypothetical protein; hypothetical protein 3866399..3866650 Shewanella frigidimarina NCIMB 400 4280130 YP_751904.1 CDS Sfri_3229 NC_008345.1 3866987 3867631 R KEGG: bca:BCE1051 hypothetical protein; hypothetical protein complement(3866987..3867631) Shewanella frigidimarina NCIMB 400 4280131 YP_751905.1 CDS Sfri_3230 NC_008345.1 3868214 3869065 R KEGG: vvy:VVA0209 hypothetical protein; hypothetical protein complement(3868214..3869065) Shewanella frigidimarina NCIMB 400 4280132 YP_751906.1 CDS Sfri_3231 NC_008345.1 3869706 3870476 R PFAM: ABC-2 type transporter; KEGG: son:SO3801 ABC transporter, permease protein; ABC-2 type transporter complement(3869706..3870476) Shewanella frigidimarina NCIMB 400 4280133 YP_751907.1 CDS Sfri_3232 NC_008345.1 3870476 3871411 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3802 ABC transporter, ATP-binding protein; ABC transporter complement(3870476..3871411) Shewanella frigidimarina NCIMB 400 4280134 YP_751908.1 CDS Sfri_3233 NC_008345.1 3871562 3872092 R KEGG: son:SO3803 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase complement(3871562..3872092) Shewanella frigidimarina NCIMB 400 4280135 YP_751909.1 CDS Sfri_3234 NC_008345.1 3872100 3872759 R TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: son:SO3804 phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative; aromatic acid decarboxylase complement(3872100..3872759) Shewanella frigidimarina NCIMB 400 4280136 YP_751910.1 CDS Sfri_3235 NC_008345.1 3872786 3874225 R TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO3805 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase complement(3872786..3874225) Shewanella frigidimarina NCIMB 400 4280137 YP_751911.1 CDS Sfri_3236 NC_008345.1 3874323 3874625 R PFAM: branched-chain amino acid transport; KEGG: son:SO1759 hypothetical protein; branched-chain amino acid transport complement(3874323..3874625) Shewanella frigidimarina NCIMB 400 4280138 YP_751912.1 CDS Sfri_3237 NC_008345.1 3874622 3875482 R PFAM: AzlC family protein; KEGG: son:SO1760 AzlC family protein; AzlC family protein complement(3874622..3875482) Shewanella frigidimarina NCIMB 400 4280139 YP_751913.1 CDS Sfri_3238 NC_008345.1 3875779 3876531 R PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1065 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA; peptidylprolyl isomerase, FKBP-type complement(3875779..3876531) Shewanella frigidimarina NCIMB 400 4280140 YP_751914.1 CDS Sfri_3239 NC_008345.1 3876700 3877668 D PFAM: WD-40 repeat protein; KEGG: son:SO1064 hypothetical WD domain protein; WD-40 repeat-containing protein 3876700..3877668 Shewanella frigidimarina NCIMB 400 4280141 YP_751915.1 CDS Sfri_3240 NC_008345.1 3877704 3877916 D PFAM: SlyX family protein; KEGG: son:SO1063 SlyX protein; SlyX family protein 3877704..3877916 Shewanella frigidimarina NCIMB 400 4280142 YP_751916.1 CDS Sfri_3241 NC_008345.1 3878141 3878653 D KEGG: son:SO1062 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 3878141..3878653 Shewanella frigidimarina NCIMB 400 4280143 YP_751917.1 CDS Sfri_3242 NC_008345.1 3878647 3880017 D PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO1061 TPR domain protein; TPR repeat-containing protein 3878647..3880017 Shewanella frigidimarina NCIMB 400 4280144 YP_751918.1 CDS Sfri_3243 NC_008345.1 3880055 3880660 D KEGG: son:SO1060 hypothetical protein; hypothetical protein 3880055..3880660 Shewanella frigidimarina NCIMB 400 4280145 YP_751919.1 CDS Sfri_3244 NC_008345.1 3880737 3883400 D TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1059 aminopeptidase N; aminopeptidase N 3880737..3883400 Shewanella frigidimarina NCIMB 400 4280146 YP_751920.1 CDS Sfri_3245 NC_008345.1 3883559 3884692 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: son:SO1148 hypothetical protein; endonuclease/exonuclease/phosphatase complement(3883559..3884692) Shewanella frigidimarina NCIMB 400 4280147 YP_751921.1 CDS Sfri_3246 NC_008345.1 3885036 3885641 D KEGG: cps:CPS_0513 hypothetical protein; hypothetical protein 3885036..3885641 Shewanella frigidimarina NCIMB 400 4280148 YP_751922.1 CDS Sfri_3247 NC_008345.1 3885667 3886272 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: vvu:VV20013 predicted phosphatase; HAD family hydrolase 3885667..3886272 Shewanella frigidimarina NCIMB 400 4280149 YP_751923.1 CDS Sfri_3248 NC_008345.1 3886313 3886534 D KEGG: vpa:VPA1560 hypothetical protein; hypothetical protein 3886313..3886534 Shewanella frigidimarina NCIMB 400 4280150 YP_751924.1 CDS Sfri_3249 NC_008345.1 3886670 3887539 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: cps:CPS_1747 hypothetical protein; Sel1 domain-containing protein complement(3886670..3887539) Shewanella frigidimarina NCIMB 400 4280151 YP_751925.1 CDS Sfri_3250 NC_008345.1 3887776 3888801 R KEGG: son:SO4050 hypothetical protein; hypothetical protein complement(3887776..3888801) Shewanella frigidimarina NCIMB 400 4280152 YP_751926.1 CDS Sfri_3251 NC_008345.1 3888922 3889992 R PFAM: secretion protein HlyD family protein; KEGG: son:SO4051 HlyD family secretion protein; secretion protein HlyD family protein complement(3888922..3889992) Shewanella frigidimarina NCIMB 400 4280153 YP_751927.1 CDS Sfri_3252 NC_008345.1 3889989 3890474 R PFAM: regulatory protein, MarR; KEGG: son:SO4052 transcriptional regulator, MarR family; transcriptional regulator, MarR family protein complement(3889989..3890474) Shewanella frigidimarina NCIMB 400 4280154 YP_751928.1 CDS Sfri_3253 NC_008345.1 3890768 3893056 D KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein; putative nitric oxide reductase (subunit B) transmembrane protein 3890768..3893056 Shewanella frigidimarina NCIMB 400 4280155 YP_751929.1 CDS Sfri_3254 NC_008345.1 3893198 3894748 D Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 3893198..3894748 Shewanella frigidimarina NCIMB 400 4280156 YP_751930.1 CDS Sfri_3255 NC_008345.1 3894913 3895830 D PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: son:SO3748 LysM domain protein; ErfK/YbiS/YcfS/YnhG family protein 3894913..3895830 Shewanella frigidimarina NCIMB 400 4280157 YP_751931.1 CDS Sfri_3256 NC_008345.1 3895976 3896773 R PFAM: protein of unknown function DUF583; KEGG: son:SO1662 hypothetical Ccm2-related protein; hypothetical protein complement(3895976..3896773) Shewanella frigidimarina NCIMB 400 4280158 YP_751932.1 CDS Sfri_3257 NC_008345.1 3896876 3898093 D PFAM: AFG1-family ATPase; KEGG: son:SO3756 hypothetical ATPase; AFG1 family ATPase 3896876..3898093 Shewanella frigidimarina NCIMB 400 4280159 YP_751933.1 CDS Sfri_3258 NC_008345.1 3898147 3898431 R KEGG: ilo:IL2440 hypothetical protein; hypothetical protein complement(3898147..3898431) Shewanella frigidimarina NCIMB 400 4280160 YP_751934.1 CDS Sfri_3259 NC_008345.1 3898659 3899612 D PFAM: protein of unknown function DUF897; KEGG: son:SO3758 hypothetical protein; hypothetical protein 3898659..3899612 Shewanella frigidimarina NCIMB 400 4280161 YP_751935.1 CDS Sfri_3260 NC_008345.1 3899835 3900818 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: son:SO3759 GGDEF domain protein; GAF sensor-containing diguanylate cyclase complement(3899835..3900818) Shewanella frigidimarina NCIMB 400 4280162 YP_751936.1 CDS Sfri_3261 NC_008345.1 3900905 3903754 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3900905..3903754) Shewanella frigidimarina NCIMB 400 4280163 YP_751937.1 CDS Sfri_3262 NC_008345.1 3903918 3904880 D KEGG: son:SO3761 hypothetical protein; hypothetical protein 3903918..3904880 Shewanella frigidimarina NCIMB 400 4280164 YP_751938.1 CDS Sfri_3263 NC_008345.1 3904894 3905793 D PFAM: protein of unknown function DUF350; KEGG: son:SO3762 hypothetical protein; hypothetical protein 3904894..3905793 Shewanella frigidimarina NCIMB 400 4280165 YP_751939.1 CDS Sfri_3264 NC_008345.1 3905797 3907557 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 3905797..3907557 Shewanella frigidimarina NCIMB 400 4280166 YP_751940.1 CDS Sfri_3265 NC_008345.1 3907637 3908050 D KEGG: son:SO3764 hypothetical protein; hypothetical protein 3907637..3908050 Shewanella frigidimarina NCIMB 400 4280167 YP_751941.1 CDS Sfri_3266 NC_008345.1 3908061 3908750 D PFAM: PspA/IM30 family protein; KEGG: son:SO3765 hypothetical protein; phage shock protein A, PspA 3908061..3908750 Shewanella frigidimarina NCIMB 400 4280168 YP_751942.1 CDS Sfri_3267 NC_008345.1 3908757 3909410 D KEGG: son:SO3766 hypothetical protein; hypothetical protein 3908757..3909410 Shewanella frigidimarina NCIMB 400 4280169 YP_751943.1 CDS Sfri_3268 NC_008345.1 3909434 3909769 D KEGG: son:SO3767 hypothetical protein; hypothetical protein 3909434..3909769 Shewanella frigidimarina NCIMB 400 4280170 YP_751944.1 CDS Sfri_3269 NC_008345.1 3909899 3910708 D PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: son:SO3768 ion transporter; Ion transport 2 domain-containing protein 3909899..3910708 Shewanella frigidimarina NCIMB 400 4280171 YP_751945.1 CDS Sfri_3270 NC_008345.1 3910920 3913220 R KEGG: son:SO0633 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; penicillin-binding protein 1B complement(3910920..3913220) Shewanella frigidimarina NCIMB 400 4280172 YP_751946.1 CDS Sfri_3271 NC_008345.1 3913289 3915835 R TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent, C-terminal domain protein; KEGG: son:SO0632 ATP-dependent helicase HrpB; ATP-dependent helicase HrpB complement(3913289..3915835) Shewanella frigidimarina NCIMB 400 4280173 YP_751947.1 CDS Sfri_3272 NC_008345.1 3916025 3918286 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO0628 GGDEF domain protein; diguanylate cyclase/phosphodiesterase complement(3916025..3918286) Shewanella frigidimarina NCIMB 400 4280174 YP_751948.1 CDS Sfri_3273 NC_008345.1 3918420 3919040 D KEGG: son:SO0627 putative 2'-5' RNA ligase; putative 2'-5' RNA ligase 3918420..3919040 Shewanella frigidimarina NCIMB 400 4280175 YP_751949.1 CDS Sfri_3274 NC_008345.1 3919095 3920369 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B complement(3919095..3920369) Shewanella frigidimarina NCIMB 400 4280176 YP_751950.1 CDS Sfri_3275 NC_008345.1 3920514 3921218 D Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 3920514..3921218 Shewanella frigidimarina NCIMB 400 4280177 YP_751951.1 CDS Sfri_3276 NC_008345.1 3921337 3921780 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: son:SO0874 DnaK suppressor protein; transcriptional regulators, TraR/DksA family protein 3921337..3921780 Shewanella frigidimarina NCIMB 400 4280178 YP_751952.1 CDS Sfri_3277 NC_008345.1 3921921 3922802 D PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: son:SO0873 glutamyl-tRNA synthetase domain protein; glutamate--tRNA ligase 3921921..3922802 Shewanella frigidimarina NCIMB 400 4280179 YP_751953.1 CDS Sfri_3278 NC_008345.1 3923284 3924345 D TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: son:SO0872 tRNA nucleotidyltransferase (CCA-adding enzyme); poly(A) polymerase 3923284..3924345 Shewanella frigidimarina NCIMB 400 4280180 YP_751954.1 CDS Sfri_3279 NC_008345.1 3924351 3924836 D KEGG: son:SO0871 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3924351..3924836 Shewanella frigidimarina NCIMB 400 4280181 YP_751955.1 CDS panB NC_008345.1 3924905 3925699 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3924905..3925699 Shewanella frigidimarina NCIMB 400 4280182 YP_751956.1 CDS panC NC_008345.1 3925941 3926795 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3925941..3926795 Shewanella frigidimarina NCIMB 400 4280183 YP_751957.1 CDS Sfri_3282 NC_008345.1 3927285 3927803 D KEGG: son:SO0868 hypothetical protein; hypothetical protein 3927285..3927803 Shewanella frigidimarina NCIMB 400 4280184 YP_751958.1 CDS Sfri_3283 NC_008345.1 3927841 3928038 R TIGRFAM: conserved hypothetical protein; KEGG: son:SO0886 hypothetical protein; hypothetical protein complement(3927841..3928038) Shewanella frigidimarina NCIMB 400 4280185 YP_751959.1 CDS Sfri_3284 NC_008345.1 3928215 3930125 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0885 ABC transporter, ATP-binding protein; ABC transporter 3928215..3930125 Shewanella frigidimarina NCIMB 400 4280186 YP_751960.1 CDS Sfri_3285 NC_008345.1 3930198 3930689 D TIGRFAM: conserved hypothetical protein; KEGG: son:SO0884 hypothetical protein; hypothetical protein 3930198..3930689 Shewanella frigidimarina NCIMB 400 4280187 YP_751961.1 CDS Sfri_3286 NC_008345.1 3930762 3932351 R PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: son:SO0882 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase complement(3930762..3932351) Shewanella frigidimarina NCIMB 400 4280188 YP_751962.1 CDS Sfri_3287 NC_008345.1 3932375 3932887 R KEGG: son:SO0881 hypothetical protein; hypothetical protein complement(3932375..3932887) Shewanella frigidimarina NCIMB 400 4280189 YP_751963.1 CDS Sfri_3288 NC_008345.1 3933000 3934016 D PFAM: alpha/beta hydrolase fold; KEGG: son:SO0880 hypothetical protein; alpha/beta hydrolase 3933000..3934016 Shewanella frigidimarina NCIMB 400 4280190 YP_751964.1 CDS Sfri_3289 NC_008345.1 3934027 3934275 D KEGG: son:SO0879 hypothetical protein; hypothetical protein 3934027..3934275 Shewanella frigidimarina NCIMB 400 4280191 YP_751965.1 CDS Sfri_3290 NC_008345.1 3934409 3935305 D PFAM: phosphoribulokinase/uridine kinase; KEGG: son:SO0878 phosphoribulokinase; phosphoribulokinase 3934409..3935305 Shewanella frigidimarina NCIMB 400 4280192 YP_751966.1 CDS Sfri_3291 NC_008345.1 3935544 3936323 R PFAM: Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO0625 hypothetical protein; TPR repeat-containing protein complement(3935544..3936323) Shewanella frigidimarina NCIMB 400 4280193 YP_751967.1 CDS Sfri_3292 NC_008345.1 3936621 3937256 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3936621..3937256 Shewanella frigidimarina NCIMB 400 4280194 YP_751968.1 CDS Sfri_3293 NC_008345.1 3937388 3937738 D KEGG: son:SO0623 hypothetical protein; hypothetical protein 3937388..3937738 Shewanella frigidimarina NCIMB 400 4280195 YP_751969.1 CDS Sfri_3294 NC_008345.1 3937719 3938393 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO0622 DNA-binding response regulator; two component transcriptional regulator, winged helix family protein 3937719..3938393 Shewanella frigidimarina NCIMB 400 4280196 YP_751970.1 CDS Sfri_3295 NC_008345.1 3938390 3939724 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0621 sensor histidine kinase; sensor signal transduction histidine kinase 3938390..3939724 Shewanella frigidimarina NCIMB 400 4280197 YP_751971.1 CDS Sfri_3296 NC_008345.1 3939802 3940602 R KEGG: son:SO0620 hypothetical protein; hypothetical protein complement(3939802..3940602) Shewanella frigidimarina NCIMB 400 4280198 YP_751972.1 CDS astD NC_008345.1 3940672 3942132 R a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase complement(3940672..3942132) Shewanella frigidimarina NCIMB 400 4280199 YP_751973.2 CDS Sfri_3298 NC_008345.1 3942142 3943161 R PFAM: arginine N-succinyltransferase beta subunit; KEGG: son:SO0618 arginine N-succinyltransferase; arginine N-succinyltransferase complement(3942142..3943161) Shewanella frigidimarina NCIMB 400 4280200 YP_751974.1 CDS argD NC_008345.1 3943279 3944496 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(3943279..3944496) Shewanella frigidimarina NCIMB 400 4280201 YP_751975.1 CDS Sfri_3300 NC_008345.1 3944832 3945974 R KEGG: son:SO0615 hypothetical protein; hypothetical protein complement(3944832..3945974) Shewanella frigidimarina NCIMB 400 4280202 YP_751976.1 CDS Sfri_3301 NC_008345.1 3946077 3948566 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: son:SO0614 dipeptidyl peptidase IV, putative; peptidase S9 prolyl oligopeptidase complement(3946077..3948566) Shewanella frigidimarina NCIMB 400 4280203 YP_751977.1 CDS Sfri_3302 NC_008345.1 3948695 3949264 R TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: son:SO0613 para-aminobenzoate synthase glutamine amidotransferase, component II; glutamine amidotransferase of anthranilate synthase complement(3948695..3949264) Shewanella frigidimarina NCIMB 400 4280204 YP_751978.1 CDS Sfri_3303 NC_008345.1 3949362 3949832 R PFAM: Stringent starvation protein B; KEGG: son:SO0612 stringent starvation protein b; ClpXP protease specificity-enhancing factor complement(3949362..3949832) Shewanella frigidimarina NCIMB 400 4280205 YP_751979.1 CDS sspA NC_008345.1 3949832 3950461 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(3949832..3950461) Shewanella frigidimarina NCIMB 400 4280206 YP_751980.1 CDS Sfri_3305 NC_008345.1 3950557 3951291 R PFAM: cytochrome c1; KEGG: son:SO0610 ubiquinol-cytochrome c reductase cytochrome c1 subunit; cytochrome c1 complement(3950557..3951291) Shewanella frigidimarina NCIMB 400 4280207 YP_751981.1 CDS Sfri_3306 NC_008345.1 3951291 3952505 R PFAM: Cytochrome b/b6, N-terminal domain protein; Cytochrome b/b6, C-terminal domain protein; KEGG: son:SO0609 ubiquinol-cytochrome c reductase, cytochrome b; cytochrome b/b6 domain-containing protein complement(3951291..3952505) Shewanella frigidimarina NCIMB 400 4280208 YP_751982.1 CDS Sfri_3307 NC_008345.1 3952505 3953095 R KEGG: son:SO0608 ubiquinol-cytochrome c reductase iron-sulfur subunit; TIGRFAM: Twin-arginine translocation pathway signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(3952505..3953095) Shewanella frigidimarina NCIMB 400 4280209 YP_751983.1 CDS Sfri_3308 NC_008345.1 3953509 3954387 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: son:SO0606 hflC protein; HflC protein complement(3953509..3954387) Shewanella frigidimarina NCIMB 400 4280210 YP_751984.1 CDS Sfri_3309 NC_008345.1 3954390 3955550 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: son:SO0605 hflK protein; HflK protein complement(3954390..3955550) Shewanella frigidimarina NCIMB 400 4280211 YP_751985.1 CDS Sfri_3310 NC_008345.1 3955584 3956891 R PFAM: GTP-binding protein, HSR1-related; KEGG: son:SO0604 GTP-binding protein HflX; HSR1-like GTP-binding protein complement(3955584..3956891) Shewanella frigidimarina NCIMB 400 4280212 YP_751986.1 CDS Sfri_3311 NC_008345.1 3956912 3957169 R TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: son:SO0603 host factor-I protein; RNA chaperone Hfq complement(3956912..3957169) Shewanella frigidimarina NCIMB 400 4280213 YP_751987.1 CDS miaA NC_008345.1 3957252 3958142 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(3957252..3958142) Shewanella frigidimarina NCIMB 400 4280214 YP_751988.1 CDS mutL NC_008345.1 3958180 3960039 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(3958180..3960039) Shewanella frigidimarina NCIMB 400 4280215 YP_751989.1 CDS Sfri_3314 NC_008345.1 3960041 3961384 R PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: son:SO0600 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(3960041..3961384) Shewanella frigidimarina NCIMB 400 4280216 YP_751990.1 CDS Sfri_3315 NC_008345.1 3961392 3961850 R PFAM: protein of unknown function UPF0079; KEGG: son:SO0599 conserved hypothetical protein TIGR00150; hypothetical protein complement(3961392..3961850) Shewanella frigidimarina NCIMB 400 4280217 YP_751991.1 CDS Sfri_3316 NC_008345.1 3962023 3962478 R KEGG: son:SO0595 hypothetical protein; hypothetical protein complement(3962023..3962478) Shewanella frigidimarina NCIMB 400 4280218 YP_751992.1 CDS Sfri_3317 NC_008345.1 3963714 3964259 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(3963714..3964259) Shewanella frigidimarina NCIMB 400 4280219 YP_751993.1 CDS Sfri_3318 NC_008345.1 3964372 3965433 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 3964372..3965433 Shewanella frigidimarina NCIMB 400 4280220 YP_751994.1 CDS psd NC_008345.1 3965489 3966355 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 3965489..3966355 Shewanella frigidimarina NCIMB 400 4280221 YP_751995.1 CDS Sfri_3320 NC_008345.1 3966361 3967233 D PFAM: protein of unknown function DUF6, transmembrane; UAA transporter; KEGG: cps:CPS_3514 membrane protein; hypothetical protein 3966361..3967233 Shewanella frigidimarina NCIMB 400 4280222 YP_751996.1 CDS Sfri_3321 NC_008345.1 3967252 3970488 D PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0588 transporter, putative; MscS mechanosensitive ion channel 3967252..3970488 Shewanella frigidimarina NCIMB 400 4280223 YP_751997.1 CDS Sfri_3322 NC_008345.1 3970513 3971247 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: son:SO0587 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3970513..3971247 Shewanella frigidimarina NCIMB 400 4280224 YP_751998.1 CDS Sfri_3323 NC_008345.1 3971281 3972234 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO0585 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase 3971281..3972234 Shewanella frigidimarina NCIMB 400 4280225 YP_751999.1 CDS Sfri_3324 NC_008345.1 3972589 3972780 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: son:SO0583 bacterioferritin-associated ferredoxin; BFD/(2Fe-2S)-binding domain-containing protein 3972589..3972780 Shewanella frigidimarina NCIMB 400 4280226 YP_752000.1 CDS Sfri_3325 NC_008345.1 3972874 3975177 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(3972874..3975177) Shewanella frigidimarina NCIMB 400 4280227 YP_752001.1 CDS Sfri_3326 NC_008345.1 3975170 3976354 R PFAM: glucose sorbosone dehydrogenase; KEGG: son:SO3898 L-sorbosone dehydrogenase, putative; glucose sorbosone dehydrogenase complement(3975170..3976354) Shewanella frigidimarina NCIMB 400 4280228 YP_752002.1 CDS Sfri_3327 NC_008345.1 3976379 3978265 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(3976379..3978265) Shewanella frigidimarina NCIMB 400 4280229 YP_752003.1 CDS Sfri_3328 NC_008345.1 3978336 3978908 R PFAM: protein of unknown function UPF0227; KEGG: son:SO3900 hypothetical protein; hypothetical protein complement(3978336..3978908) Shewanella frigidimarina NCIMB 400 4280230 YP_752004.1 CDS Sfri_3329 NC_008345.1 3978973 3979812 R PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; KEGG: son:SO3901 lacZ expression regulator; calcineurin phosphoesterase C-terminal domain-containing protein complement(3978973..3979812) Shewanella frigidimarina NCIMB 400 4280231 YP_752005.1 CDS Sfri_3330 NC_008345.1 3979848 3980285 R PFAM: protein of unknown function DUF1249; KEGG: son:SO3902 hypothetical protein; hypothetical protein complement(3979848..3980285) Shewanella frigidimarina NCIMB 400 4280232 YP_752006.1 CDS Sfri_3331 NC_008345.1 3980325 3980951 R KEGG: son:SO3903 ADP-ribose pyrophosphatase; TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase; nucleoside diphosphate pyrophosphatase complement(3980325..3980951) Shewanella frigidimarina NCIMB 400 4280233 YP_752007.1 CDS tolC NC_008345.1 3981377 3982672 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3981377..3982672 Shewanella frigidimarina NCIMB 400 4280234 YP_752008.1 CDS Sfri_3333 NC_008345.1 3982797 3983531 R KEGG: son:SO3905 hypothetical protein; hypothetical protein complement(3982797..3983531) Shewanella frigidimarina NCIMB 400 4280235 YP_752009.1 CDS Sfri_3334 NC_008345.1 3983534 3984505 R KEGG: son:SO3906 hypothetical protein; hypothetical protein complement(3983534..3984505) Shewanella frigidimarina NCIMB 400 4280236 YP_752010.1 CDS Sfri_3335 NC_008345.1 3984518 3985006 R PFAM: protein of unknown function DUF461; KEGG: son:SO3907 hypothetical protein; hypothetical protein complement(3984518..3985006) Shewanella frigidimarina NCIMB 400 4280237 YP_752011.1 CDS Sfri_3336 NC_008345.1 3985042 3985779 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO3908 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 3985042..3985779 Shewanella frigidimarina NCIMB 400 4280238 YP_752012.1 CDS Sfri_3337 NC_008345.1 3985850 3986050 R KEGG: son:SO3909 hypothetical protein; hypothetical protein complement(3985850..3986050) Shewanella frigidimarina NCIMB 400 4280239 YP_752013.1 CDS Sfri_3338 NC_008345.1 3986232 3986537 R KEGG: son:SO3910 hypothetical protein; hypothetical protein complement(3986232..3986537) Shewanella frigidimarina NCIMB 400 4280240 YP_752014.1 CDS Sfri_3339 NC_008345.1 3987098 3987493 D KEGG: dde:Dde_2987 transposase; transposase 3987098..3987493 Shewanella frigidimarina NCIMB 400 4280241 YP_752015.1 CDS Sfri_3340 NC_008345.1 3987598 3988326 D PFAM: Integrase, catalytic region; KEGG: par:Psyc_0937 putative transposase OrfB; integrase catalytic subunit 3987598..3988326 Shewanella frigidimarina NCIMB 400 4280242 YP_752016.1 CDS Sfri_3341 NC_008345.1 3988537 3989586 R TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: son:SO3912 TIM-barrel protein, yjbN family; tRNA-dihydrouridine synthase A complement(3988537..3989586) Shewanella frigidimarina NCIMB 400 4280243 YP_752017.1 CDS Sfri_3342 NC_008345.1 3990055 3990576 R KEGG: son:SO0147 hypothetical protein; hypothetical protein complement(3990055..3990576) Shewanella frigidimarina NCIMB 400 4280244 YP_752018.1 CDS Sfri_3343 NC_008345.1 3990824 3991219 R PFAM: Cupin 2, conserved barrel domain protein; cupin complement(3990824..3991219) Shewanella frigidimarina NCIMB 400 4280245 YP_752019.1 CDS Sfri_3344 NC_008345.1 3991917 3992384 D PFAM: CheC domain protein; KEGG: son:SO3915 putative chemotaxis protein CheX; CheC domain-containing protein 3991917..3992384 Shewanella frigidimarina NCIMB 400 4280246 YP_752020.1 CDS alr NC_008345.1 3992551 3993669 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(3992551..3993669) Shewanella frigidimarina NCIMB 400 4280247 YP_752021.1 CDS Sfri_3346 NC_008345.1 3993816 3995222 R KEGG: son:SO3917 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; replicative DNA helicase complement(3993816..3995222) Shewanella frigidimarina NCIMB 400 4280248 YP_752022.1 CDS Sfri_3347 NC_008345.1 3995353 3998178 D KEGG: son:SO3918 hypothetical protein; hypothetical protein 3995353..3998178 Shewanella frigidimarina NCIMB 400 4280249 YP_752023.1 CDS rplI NC_008345.1 3998364 3998816 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(3998364..3998816) Shewanella frigidimarina NCIMB 400 4280250 YP_752024.1 CDS rpsR NC_008345.1 3998862 3999089 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(3998862..3999089) Shewanella frigidimarina NCIMB 400 4280251 YP_752025.1 CDS Sfri_3350 NC_008345.1 3999102 3999389 R binds single-stranded DNA at the primosome assembly site; primosomal replication protein N complement(3999102..3999389) Shewanella frigidimarina NCIMB 400 4280252 YP_752026.1 CDS rpsF NC_008345.1 3999411 3999803 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(3999411..3999803) Shewanella frigidimarina NCIMB 400 4280253 YP_752027.1 CDS Sfri_3352 NC_008345.1 4000020 4000772 D PFAM: protein of unknown function DUF481; KEGG: son:SO3931 putative salt-induced outer membrane protein; hypothetical protein 4000020..4000772 Shewanella frigidimarina NCIMB 400 4280254 YP_752028.1 CDS Sfri_3353 NC_008345.1 4000854 4002278 D PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3933 hypothetical protein; major facilitator transporter 4000854..4002278 Shewanella frigidimarina NCIMB 400 4280255 YP_752029.1 CDS Sfri_3354 NC_008345.1 4002482 4003222 R Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase complement(4002482..4003222) Shewanella frigidimarina NCIMB 400 4280256 YP_752030.1 CDS Sfri_3355 NC_008345.1 4003227 4005716 R KEGG: son:SO3935 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain protein; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R complement(4003227..4005716) Shewanella frigidimarina NCIMB 400 4280257 YP_752031.1 CDS Sfri_3356 NC_008345.1 4005754 4006395 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO3936 sodium-type flagellar protein MotX; Sel1 domain-containing protein complement(4005754..4006395) Shewanella frigidimarina NCIMB 400 4280258 YP_752032.1 CDS Sfri_3357 NC_008345.1 4006494 4007789 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(4006494..4007789) Shewanella frigidimarina NCIMB 400 4280259 YP_752033.1 CDS Sfri_3358 NC_008345.1 4007859 4008047 R KEGG: son:SO3938 hypothetical protein; hypothetical protein complement(4007859..4008047) Shewanella frigidimarina NCIMB 400 4280260 YP_752034.1 CDS rpsI NC_008345.1 4008439 4008831 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(4008439..4008831) Shewanella frigidimarina NCIMB 400 4280261 YP_752035.1 CDS rplM NC_008345.1 4008849 4009277 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(4008849..4009277) Shewanella frigidimarina NCIMB 400 4280262 YP_752036.1 CDS Sfri_3361 NC_008345.1 4009541 4010653 R PFAM: AFG1-family ATPase; KEGG: son:SO3941 hypothetical protein; AFG1 family ATPase complement(4009541..4010653) Shewanella frigidimarina NCIMB 400 4280263 YP_752037.1 CDS Sfri_3362 NC_008345.1 4010976 4012325 D TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3942 serine protease, HtrA/DegQ/DegS family; protease Do 4010976..4012325 Shewanella frigidimarina NCIMB 400 4280264 YP_752038.1 CDS Sfri_3363 NC_008345.1 4012481 4013560 D TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3943 protease DegS; periplasmic serine protease DegS 4012481..4013560 Shewanella frigidimarina NCIMB 400 4280265 YP_752039.1 CDS Sfri_3364 NC_008345.1 4013670 4014929 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(4013670..4014929) Shewanella frigidimarina NCIMB 400 4280266 YP_752040.1 CDS Sfri_3365 NC_008345.1 4014945 4015196 R PFAM: BolA family protein; KEGG: son:SO3949 BolA/YrbA family protein; BolA family protein complement(4014945..4015196) Shewanella frigidimarina NCIMB 400 4280267 YP_752041.1 CDS Sfri_3366 NC_008345.1 4015201 4015524 R KEGG: son:SO3950 SpoIIAA family protein; SpoIIAA family protein complement(4015201..4015524) Shewanella frigidimarina NCIMB 400 4280268 YP_752042.1 CDS Sfri_3367 NC_008345.1 4015521 4016189 R PFAM: toluene tolerance family protein; KEGG: son:SO3951 hypothetical protein; toluene tolerance family protein complement(4015521..4016189) Shewanella frigidimarina NCIMB 400 4280269 YP_752043.1 CDS Sfri_3368 NC_008345.1 4016200 4016673 R PFAM: Mammalian cell entry related domain protein; KEGG: son:SO3952 mce-related protein; hypothetical protein complement(4016200..4016673) Shewanella frigidimarina NCIMB 400 4280270 YP_752044.1 CDS Sfri_3369 NC_008345.1 4016715 4017500 R PFAM: protein of unknown function DUF140; KEGG: son:SO3953 putative membrane protein; hypothetical protein complement(4016715..4017500) Shewanella frigidimarina NCIMB 400 4280271 YP_752045.1 CDS Sfri_3370 NC_008345.1 4017487 4018311 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3954 ABC transporter, ATP-binding protein, putative; ABC transporter complement(4017487..4018311) Shewanella frigidimarina NCIMB 400 4280272 YP_752046.1 CDS Sfri_3371 NC_008345.1 4018489 4019451 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: ppr:PBPRA3249 putative Ca2+/Na+ antiporter; Na+/Ca+ antiporter, CaCA family protein 4018489..4019451 Shewanella frigidimarina NCIMB 400 4280273 YP_752047.1 CDS Sfri_3372 NC_008345.1 4019496 4020473 D KEGG: son:SO3956 carbohydrate isomerase, KpsF/GutQ family; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 4019496..4020473 Shewanella frigidimarina NCIMB 400 4280274 YP_752048.1 CDS Sfri_3373 NC_008345.1 4020476 4021042 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4020476..4021042 Shewanella frigidimarina NCIMB 400 4280275 YP_752049.1 CDS Sfri_3374 NC_008345.1 4021039 4021599 D PFAM: protein of unknown function DUF1239; KEGG: son:SO3958 hypothetical protein; hypothetical protein 4021039..4021599 Shewanella frigidimarina NCIMB 400 4280276 YP_752050.1 CDS Sfri_3375 NC_008345.1 4021586 4022167 D PFAM: OstA family protein; KEGG: son:SO3959 hypothetical protein; OstA family protein 4021586..4022167 Shewanella frigidimarina NCIMB 400 4280277 YP_752051.1 CDS Sfri_3376 NC_008345.1 4022164 4022895 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3960 ABC transporter, ATP-binding protein; ABC transporter 4022164..4022895 Shewanella frigidimarina NCIMB 400 4280278 YP_752052.1 CDS Sfri_3377 NC_008345.1 4023038 4024522 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 4023038..4024522 Shewanella frigidimarina NCIMB 400 4280279 YP_752053.1 CDS Sfri_3378 NC_008345.1 4024548 4024835 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3962 ribosomal subunit interface protein; sigma 54 modulation protein/ribosomal protein S30EA 4024548..4024835 Shewanella frigidimarina NCIMB 400 4280280 YP_752054.1 CDS Sfri_3379 NC_008345.1 4024838 4025281 D TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: son:SO3963 nitrogen regulatory IIA protein; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 4024838..4025281 Shewanella frigidimarina NCIMB 400 4280281 YP_752055.1 CDS Sfri_3380 NC_008345.1 4025278 4026141 D PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: son:SO3964 hypothetical protein; hypothetical protein 4025278..4026141 Shewanella frigidimarina NCIMB 400 4280282 YP_752056.1 CDS Sfri_3381 NC_008345.1 4026162 4026437 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: son:SO3965 phosphocarrier protein NPR; phosphocarrier, HPr family protein 4026162..4026437 Shewanella frigidimarina NCIMB 400 4280283 YP_752057.1 CDS Sfri_3382 NC_008345.1 4026947 4028311 D TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO3966 magnesium transporter; magnesium transporter 4026947..4028311 Shewanella frigidimarina NCIMB 400 4280284 YP_752058.1 CDS Sfri_3383 NC_008345.1 4029002 4029253 D KEGG: son:SO3972 hypothetical transposase; putative transposase 4029002..4029253 Shewanella frigidimarina NCIMB 400 4280285 YP_752059.1 CDS Sfri_3384 NC_008345.1 4029981 4032470 R KEGG: cvi:CV1620 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) complement(4029981..4032470) Shewanella frigidimarina NCIMB 400 4280286 YP_752060.1 CDS Sfri_3385 NC_008345.1 4032888 4033538 D KEGG: vch:VC1349 sensory box sensor histidine kinase/response regulator; hypothetical protein 4032888..4033538 Shewanella frigidimarina NCIMB 400 4280287 YP_752061.1 CDS Sfri_3386 NC_008345.1 4033767 4034762 D KEGG: vch:VC1369 hypothetical protein; hypothetical protein 4033767..4034762 Shewanella frigidimarina NCIMB 400 4280288 YP_752062.1 CDS Sfri_3387 NC_008345.1 4034766 4036094 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: vch:VC1370 GGDEF family protein; diguanylate cyclase 4034766..4036094 Shewanella frigidimarina NCIMB 400 4280289 YP_752063.1 CDS Sfri_3388 NC_008345.1 4036064 4036630 R KEGG: son:SO0508 hypothetical protein; hypothetical protein complement(4036064..4036630) Shewanella frigidimarina NCIMB 400 4280290 YP_752064.1 CDS Sfri_3389 NC_008345.1 4037113 4038594 D TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: son:SO0506 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; UbiD family decarboxylase 4037113..4038594 Shewanella frigidimarina NCIMB 400 4280291 YP_752065.1 CDS fre NC_008345.1 4038676 4039374 D NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 4038676..4039374 Shewanella frigidimarina NCIMB 400 4280292 YP_752066.1 CDS Sfri_3391 NC_008345.1 4039650 4040204 D KEGG: sai:Saci_1672 conserved crenarchaeal protein; hypothetical protein 4039650..4040204 Shewanella frigidimarina NCIMB 400 4280293 YP_752067.1 CDS Sfri_3392 NC_008345.1 4040204 4040944 D PFAM: deoxyUTP pyrophosphatase; dUTP pyrophosphatase 4040204..4040944 Shewanella frigidimarina NCIMB 400 4280294 YP_752068.1 CDS Sfri_3393 NC_008345.1 4040999 4041532 D KEGG: cgb:cg3155 deoxycytidine triphosphate deaminase; deoxycytidine deaminase-like protein 4040999..4041532 Shewanella frigidimarina NCIMB 400 4280295 YP_752069.1 CDS Sfri_3394 NC_008345.1 4041636 4042661 R hypothetical protein complement(4041636..4042661) Shewanella frigidimarina NCIMB 400 4280296 YP_752070.1 CDS Sfri_3395 NC_008345.1 4042812 4043729 R KEGG: ilo:IL2088 predicted hydrolase of the alpha/beta superfamily; alpha/beta fold family hydrolase complement(4042812..4043729) Shewanella frigidimarina NCIMB 400 4280297 YP_752071.1 CDS ubiA NC_008345.1 4043763 4044623 R catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase complement(4043763..4044623) Shewanella frigidimarina NCIMB 400 4280298 YP_752072.1 CDS uvrD NC_008345.1 4044661 4046844 R unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II complement(4044661..4046844) Shewanella frigidimarina NCIMB 400 4280299 YP_752073.1 CDS Sfri_3398 NC_008345.1 4047278 4048156 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VPA0365 putative transcriptional regulator protein; transcriptional regulator, LysR family protein 4047278..4048156 Shewanella frigidimarina NCIMB 400 4280300 YP_752074.1 CDS Sfri_3399 NC_008345.1 4048327 4049265 R PFAM: band 7 protein; KEGG: son:SO4128 SPFH domain/Band 7 family protein; hypothetical protein complement(4048327..4049265) Shewanella frigidimarina NCIMB 400 4280301 YP_752075.1 CDS Sfri_3400 NC_008345.1 4049265 4050194 R PFAM: band 7 protein; KEGG: son:SO4129 SPFH domain/Band 7 family protein; hypothetical protein complement(4049265..4050194) Shewanella frigidimarina NCIMB 400 4280302 YP_752076.1 CDS Sfri_3401 NC_008345.1 4050408 4050869 R PFAM: protein of unknown function DUF107; KEGG: son:SO4130 hypothetical protein; hypothetical protein complement(4050408..4050869) Shewanella frigidimarina NCIMB 400 4280303 YP_752077.1 CDS Sfri_3402 NC_008345.1 4051361 4052113 D KEGG: son:SO4131 hypothetical protein; hypothetical protein 4051361..4052113 Shewanella frigidimarina NCIMB 400 4280304 YP_752078.1 CDS Sfri_3403 NC_008345.1 4052300 4053058 R catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase complement(4052300..4053058) Shewanella frigidimarina NCIMB 400 4280305 YP_752079.1 CDS Sfri_3404 NC_008345.1 4053500 4053721 D KEGG: son:SO4134 hypothetical protein; hypothetical protein 4053500..4053721 Shewanella frigidimarina NCIMB 400 4280306 YP_752080.1 CDS Sfri_3405 NC_008345.1 4053784 4054959 R PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: son:SO4136 decarboxylase, pyridoxal-dependent; diaminopimelate decarboxylase complement(4053784..4054959) Shewanella frigidimarina NCIMB 400 4280307 YP_752081.1 CDS Sfri_3406 NC_008345.1 4055318 4056151 D PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa0714 mechanosensitive channel protein; MscS mechanosensitive ion channel 4055318..4056151 Shewanella frigidimarina NCIMB 400 4280308 YP_752082.1 CDS Sfri_3407 NC_008345.1 4056706 4057980 D TIGRFAM: ribokinase; PFAM: regulatory protein, DeoR; PfkB domain protein; Helix-turn-helix, type 11 domain protein; Phosphomethylpyrimidine kinase type-1; KEGG: ecc:c2492 putative carbohydrate kinase; ribokinase 4056706..4057980 Shewanella frigidimarina NCIMB 400 4280309 YP_752083.1 CDS Sfri_3408 NC_008345.1 4058118 4059092 R PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ppr:PBPRB1417 hypothetical inosine-uridine preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase complement(4058118..4059092) Shewanella frigidimarina NCIMB 400 4280310 YP_752084.1 CDS Sfri_3409 NC_008345.1 4059691 4060107 D KEGG: cps:CPS_1160 hypothetical protein; hypothetical protein 4059691..4060107 Shewanella frigidimarina NCIMB 400 4280311 YP_752085.1 CDS Sfri_3410 NC_008345.1 4060104 4060298 D PFAM: helix-turn-helix domain protein; KEGG: cps:CPS_1159 DNA-binding protein; transcriptional regulator, XRE family protein 4060104..4060298 Shewanella frigidimarina NCIMB 400 4280312 YP_752086.1 CDS Sfri_3411 NC_008345.1 4060381 4061154 R SMART: Elongator protein 3/MiaB/NifB; KEGG: son:SO0528 hypothetical protein; elongator protein 3/MiaB/NifB complement(4060381..4061154) Shewanella frigidimarina NCIMB 400 4280313 YP_752087.1 CDS Sfri_3412 NC_008345.1 4061695 4063863 D PFAM: SEC-C motif domain protein; NERD domain protein; KEGG: ppr:PBPRB1686 hypothetical SecA-related protein; NERD domain-containing protein 4061695..4063863 Shewanella frigidimarina NCIMB 400 4280314 YP_752088.1 CDS Sfri_3413 NC_008345.1 4064082 4068119 D KEGG: vfi:VFA0705 hypothetical protein; hypothetical protein 4064082..4068119 Shewanella frigidimarina NCIMB 400 4280315 YP_752089.1 CDS Sfri_3414 NC_008345.1 4068282 4069841 D PFAM: Integrase, catalytic region; KEGG: pha:PSHAa0416 transposase; integrase catalytic subunit 4068282..4069841 Shewanella frigidimarina NCIMB 400 4280316 YP_752090.1 CDS Sfri_3415 NC_008345.1 4069870 4070628 D PFAM: IstB domain protein ATP-binding protein; KEGG: pha:PSHAa0414 transposase; IstB ATP binding domain-containing protein 4069870..4070628 Shewanella frigidimarina NCIMB 400 4280317 YP_752091.1 CDS Sfri_3416 NC_008345.1 4070675 4073164 D KEGG: vfi:VFA0705 hypothetical protein; hypothetical protein 4070675..4073164 Shewanella frigidimarina NCIMB 400 4280318 YP_752092.1 CDS Sfri_3417 NC_008345.1 4073379 4073738 D KEGG: vfi:VFA0704 hypothetical protein; hypothetical protein 4073379..4073738 Shewanella frigidimarina NCIMB 400 4280319 YP_752093.1 CDS Sfri_3418 NC_008345.1 4074001 4075410 R PFAM: type III restriction enzyme, res subunit; KEGG: ppr:PBPRA1805 hypothetical protein; type III restriction enzyme, res subunit complement(4074001..4075410) Shewanella frigidimarina NCIMB 400 4280320 YP_752094.1 CDS Sfri_3419 NC_008345.1 4075416 4075952 R KEGG: ppr:PBPRA1806 hypothetical protein; hypothetical protein complement(4075416..4075952) Shewanella frigidimarina NCIMB 400 4280321 YP_752095.1 CDS Sfri_3420 NC_008345.1 4076084 4076290 D PFAM: helix-turn-helix domain protein; KEGG: vvy:VV0142 predicted transcriptional regulator; transcriptional regulator, XRE family protein 4076084..4076290 Shewanella frigidimarina NCIMB 400 4280322 YP_752096.1 CDS Sfri_3421 NC_008345.1 4076566 4076889 R hypothetical protein complement(4076566..4076889) Shewanella frigidimarina NCIMB 400 4280323 YP_752097.1 CDS Sfri_3423 NC_008345.1 4077200 4077721 R KEGG: vfi:VFA1144 hypothetical cytosolic protein; hypothetical protein complement(4077200..4077721) Shewanella frigidimarina NCIMB 400 4280324 YP_752098.1 CDS Sfri_3425 NC_008345.1 4078252 4078578 R PFAM: small multidrug resistance protein; KEGG: son:SOA0159 multidrug efflux transporter; small multidrug resistance protein complement(4078252..4078578) Shewanella frigidimarina NCIMB 400 4280325 YP_752099.1 CDS Sfri_3426 NC_008345.1 4078819 4079658 R PFAM: putative esterase; KEGG: son:SOA0160 esterase, putative; carboxylesterase complement(4078819..4079658) Shewanella frigidimarina NCIMB 400 4280326 YP_752100.1 CDS Sfri_3427 NC_008345.1 4079745 4080875 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SOA0161 zinc-binding dehydrogenase; alcohol dehydrogenase complement(4079745..4080875) Shewanella frigidimarina NCIMB 400 4280327 YP_752101.1 CDS Sfri_3428 NC_008345.1 4081138 4081404 R PFAM: zinc finger, DksA/TraR C4-type; KEGG: pae:PA4870 hypothetical protein; hypothetical protein complement(4081138..4081404) Shewanella frigidimarina NCIMB 400 4280328 YP_752102.1 CDS Sfri_3429 NC_008345.1 4082026 4082214 R KEGG: pst:PSPTO5035 glutathione synthetase; glutathione synthetase complement(4082026..4082214) Shewanella frigidimarina NCIMB 400 4280329 YP_752103.1 CDS Sfri_3430 NC_008345.1 4082268 4083860 R TIGRFAM: glutamate--cysteine ligase; KEGG: pfl:PFL_0273 glutamate--cysteine ligase; glutamate--cysteine ligase complement(4082268..4083860) Shewanella frigidimarina NCIMB 400 4280330 YP_752104.1 CDS Sfri_3431 NC_008345.1 4084432 4085721 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vch:VC1890 NADH dehydrogenase; NADH dehydrogenase 4084432..4085721 Shewanella frigidimarina NCIMB 400 4280331 YP_752105.1 CDS Sfri_3432 NC_008345.1 4086657 4087145 R KEGG: hch:HCH_02210 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; hypothetical protein complement(4086657..4087145) Shewanella frigidimarina NCIMB 400 4280332 YP_752106.1 CDS Sfri_3434 NC_008345.1 4087449 4088123 R PFAM: IstB domain protein ATP-binding protein; KEGG: pha:PSHAa0414 transposase; IstB ATP binding domain-containing protein complement(4087449..4088123) Shewanella frigidimarina NCIMB 400 4280333 YP_752107.1 CDS Sfri_3436 NC_008345.1 4088544 4089152 R catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein complement(4088544..4089152) Shewanella frigidimarina NCIMB 400 4280334 YP_752108.1 CDS Sfri_3437 NC_008345.1 4089258 4089665 R KEGG: ppr:PBPRB1571 hypothetical protein; hypothetical protein complement(4089258..4089665) Shewanella frigidimarina NCIMB 400 4280335 YP_752109.1 CDS Sfri_3438 NC_008345.1 4089945 4090427 R catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein complement(4089945..4090427) Shewanella frigidimarina NCIMB 400 4280336 YP_752110.1 CDS Sfri_3439 NC_008345.1 4090567 4091718 R PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SOA0164 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(4090567..4091718) Shewanella frigidimarina NCIMB 400 4280337 YP_752111.1 CDS Sfri_3440 NC_008345.1 4092056 4092925 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SOA0165 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 4092056..4092925 Shewanella frigidimarina NCIMB 400 4280338 YP_752112.1 CDS Sfri_3441 NC_008345.1 4093517 4093924 R KEGG: psp:PSPPH_1146 TetR family transcriptional regulator-like protein; TetR family transcriptional regulator-like protein complement(4093517..4093924) Shewanella frigidimarina NCIMB 400 4280339 YP_752113.1 CDS Sfri_3442 NC_008345.1 4093917 4095719 R PFAM: phage integrase family protein; KEGG: pst:PSPTO3615 site-specific recombinase, phage integrase family; phage integrase family protein complement(4093917..4095719) Shewanella frigidimarina NCIMB 400 4280340 YP_752114.1 CDS Sfri_3443 NC_008345.1 4095716 4097353 R KEGG: psp:PSPPH_1148 hypothetical protein; hypothetical protein complement(4095716..4097353) Shewanella frigidimarina NCIMB 400 4280341 YP_752115.1 CDS Sfri_3444 NC_008345.1 4097362 4098495 R PFAM: phage integrase family protein; KEGG: psp:PSPPH_1149 site-specific recombinase, phage integrase family; phage integrase family protein complement(4097362..4098495) Shewanella frigidimarina NCIMB 400 4280342 YP_752116.1 CDS Sfri_3446 NC_008345.1 4099854 4100345 R PFAM: phage integrase family protein; KEGG: vvu:VV20655 integrase; phage integrase family protein complement(4099854..4100345) Shewanella frigidimarina NCIMB 400 4280343 YP_752117.1 CDS Sfri_3447 NC_008345.1 4101371 4102543 D PFAM: AAA-4 family protein; KEGG: tcx:Tcr_0336 hypothetical protein; putative transcriptional regulator 4101371..4102543 Shewanella frigidimarina NCIMB 400 4280344 YP_752118.1 CDS Sfri_3448 NC_008345.1 4102937 4103359 R TIGRFAM: conserved hypothetical protein; KEGG: nmu:Nmul_A0917 hypothetical protein; hypothetical protein complement(4102937..4103359) Shewanella frigidimarina NCIMB 400 4280345 YP_752119.1 CDS Sfri_3449 NC_008345.1 4103411 4103677 R KEGG: son:SOA0173 hypothetical protein; hypothetical protein complement(4103411..4103677) Shewanella frigidimarina NCIMB 400 4280346 YP_752120.1 CDS Sfri_3450 NC_008345.1 4103830 4104096 D PFAM: transposase IS3/IS911 family protein; KEGG: son:SO4268 ISSod2, transposase OrfA; transposase IS3/IS911 family protein 4103830..4104096 Shewanella frigidimarina NCIMB 400 4280347 YP_752121.1 CDS Sfri_3451 NC_008345.1 4104163 4104909 D PFAM: Integrase, catalytic region; KEGG: xcv:XCV1296 ISxac2 transposase; integrase catalytic subunit 4104163..4104909 Shewanella frigidimarina NCIMB 400 4280348 YP_752122.1 CDS Sfri_3452 NC_008345.1 4104936 4105157 D KEGG: son:SOA0013 umuD protein; umuD protein 4104936..4105157 Shewanella frigidimarina NCIMB 400 4280349 YP_752123.1 CDS Sfri_3453 NC_008345.1 4105158 4106414 D PFAM: UMUC domain protein DNA-repair protein; KEGG: son:SOA0012 umuC protein; DNA-directed DNA polymerase 4105158..4106414 Shewanella frigidimarina NCIMB 400 4280350 YP_752124.1 CDS Sfri_3454 NC_008345.1 4107415 4107771 D hypothetical protein 4107415..4107771 Shewanella frigidimarina NCIMB 400 4280351 YP_752125.1 CDS Sfri_3455 NC_008345.1 4107847 4109196 D PFAM: outer membrane efflux protein; KEGG: cps:CPS_1957 putative RND efflux system protein; outer membrane efflux protein 4107847..4109196 Shewanella frigidimarina NCIMB 400 4280352 YP_752126.1 CDS Sfri_3456 NC_008345.1 4109193 4110119 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rpa:RPA2055 possible RND divalent metal cation efflux membrane fusion protein CzcB precursor; RND family efflux transporter MFP subunit 4109193..4110119 Shewanella frigidimarina NCIMB 400 4280353 YP_752127.1 CDS Sfri_3457 NC_008345.1 4110210 4113326 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rpa:RPA2056 RND divalent metal cation efflux transporter CzcA; heavy metal efflux pump, CzcA family protein 4110210..4113326 Shewanella frigidimarina NCIMB 400 4280354 YP_752128.1 CDS Sfri_3458 NC_008345.1 4113762 4114121 D hypothetical protein 4113762..4114121 Shewanella frigidimarina NCIMB 400 4280355 YP_752129.1 CDS Sfri_3459 NC_008345.1 4114512 4114679 D KEGG: vvy:VV0140 integrase; hypothetical protein 4114512..4114679 Shewanella frigidimarina NCIMB 400 4280356 YP_752130.1 CDS Sfri_3460 NC_008345.1 4114890 4115498 R PFAM: Group II intron, maturase-specific domain protein; KEGG: plt:Plut_1820 RNA-directed DNA polymerase; maturase-specific domain-containing protein complement(4114890..4115498) Shewanella frigidimarina NCIMB 400 4280357 YP_752131.1 CDS Sfri_3461 NC_008345.1 4115544 4115984 R TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: pfl:PFL_5893 Cd(II)/Pb(II)-responsive transcriptional regulator; transcriptional regulator, MerR family protein complement(4115544..4115984) Shewanella frigidimarina NCIMB 400 4280358 YP_752132.1 CDS Sfri_3462 NC_008345.1 4116070 4118475 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pfl:PFL_5892 cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase 4116070..4118475 Shewanella frigidimarina NCIMB 400 4280359 YP_752133.1 CDS Sfri_3463 NC_008345.1 4118472 4119551 D TIGRFAM: lipoprotein signal peptidase; PFAM: phosphoesterase, PA-phosphatase related; peptidase A8, signal peptidase II; KEGG: ilo:IL0633 lipoprotein signal peptidase; lipoprotein signal peptidase 4118472..4119551 Shewanella frigidimarina NCIMB 400 4280360 YP_752134.1 CDS Sfri_3464 NC_008345.1 4119681 4120238 D PFAM: Resolvase, N-terminal domain protein; Resolvase helix-turn-helix domain protein; KEGG: sty:HCM1.168 resolvase; resolvase domain-containing protein 4119681..4120238 Shewanella frigidimarina NCIMB 400 4280361 YP_752135.1 CDS Sfri_3465 NC_008345.1 4120241 4121821 D PFAM: transposase Tn3 family protein; KEGG: sec:SC008 transposase; transposase Tn3 family protein 4120241..4121821 Shewanella frigidimarina NCIMB 400 4280362 YP_752136.1 CDS Sfri_3466 NC_008345.1 4121926 4124904 D PFAM: transposase Tn3 family protein; KEGG: reu:Reut_D6457 transposase Tn3; transposase Tn3 family protein 4121926..4124904 Shewanella frigidimarina NCIMB 400 4280363 YP_752137.1 CDS Sfri_3467 NC_008345.1 4125082 4125984 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pha:PSHAb0288 putative cation efflux protein; cation diffusion facilitator family transporter 4125082..4125984 Shewanella frigidimarina NCIMB 400 4280364 YP_752138.1 CDS Sfri_3468 NC_008345.1 4125971 4126408 D KEGG: tdn:Tmden_0321 PAP2 superfamily protein; PAP2 superfamily protein 4125971..4126408 Shewanella frigidimarina NCIMB 400 4280365 YP_752139.1 CDS Sfri_3469 NC_008345.1 4126523 4129174 D PFAM: transposase Tn3 family protein; KEGG: reu:Reut_D6457 transposase Tn3; transposase Tn3 family protein 4126523..4129174 Shewanella frigidimarina NCIMB 400 4280366 YP_752140.1 CDS Sfri_3470 NC_008345.1 4129062 4132148 R PFAM: transposase Tn3 family protein; KEGG: reu:Reut_D6457 transposase Tn3; transposase Tn3 family protein complement(4129062..4132148) Shewanella frigidimarina NCIMB 400 4280367 YP_752141.1 CDS Sfri_3471 NC_008345.1 4132172 4132483 R PFAM: plasmid stabilization system; KEGG: son:SOA0088 plasmid stabilization protein ParE, putative; plasmid stabilization system protein complement(4132172..4132483) Shewanella frigidimarina NCIMB 400 4280368 YP_752142.1 CDS Sfri_3472 NC_008345.1 4132483 4132743 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: son:SOA0087 hypothetical protein; prevent-host-death family protein complement(4132483..4132743) Shewanella frigidimarina NCIMB 400 4280369 YP_752143.1 CDS Sfri_3473 NC_008345.1 4132936 4133895 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pae:PA0397 probable cation efflux system protein; cation diffusion facilitator family transporter complement(4132936..4133895) Shewanella frigidimarina NCIMB 400 4280370 YP_752144.1 CDS Sfri_3474 NC_008345.1 4133915 4134481 R PFAM: Resolvase, N-terminal domain protein; Resolvase helix-turn-helix domain protein; KEGG: rru:Rru_B0010 resolvase; resolvase domain-containing protein complement(4133915..4134481) Shewanella frigidimarina NCIMB 400 4280371 YP_752145.1 CDS Sfri_3475 NC_008345.1 4134489 4134794 R KEGG: bur:Bcep18194_A3305 hypothetical protein; hypothetical protein complement(4134489..4134794) Shewanella frigidimarina NCIMB 400 4280372 YP_752146.1 CDS Sfri_3477 NC_008345.1 4138049 4138639 D PFAM: Resolvase, N-terminal domain protein; KEGG: son:SOA0086 site-specific recombinase, resolvase family; resolvase domain-containing protein 4138049..4138639 Shewanella frigidimarina NCIMB 400 4280373 YP_752147.1 CDS Sfri_3478 NC_008345.1 4138774 4140399 D PFAM: sulfatase; protein of unknown function DUF1705; KEGG: son:SO2048 membrane protein, putative; sulfatase 4138774..4140399 Shewanella frigidimarina NCIMB 400 4280374 YP_752148.1 CDS Sfri_3479 NC_008345.1 4140638 4141108 D KEGG: xac:XAC2430 Tn5044 transposase; Tn5044 transposase 4140638..4141108 Shewanella frigidimarina NCIMB 400 4280375 YP_752149.1 CDS Sfri_3480 NC_008345.1 4141564 4141971 R KEGG: psp:PSPPH_1146 TetR family transcriptional regulator-like protein; TetR family transcriptional regulator-like protein complement(4141564..4141971) Shewanella frigidimarina NCIMB 400 4280376 YP_752150.1 CDS Sfri_3481 NC_008345.1 4141964 4143766 R PFAM: phage integrase family protein; KEGG: pst:PSPTO3615 site-specific recombinase, phage integrase family; phage integrase family protein complement(4141964..4143766) Shewanella frigidimarina NCIMB 400 4280377 YP_752151.1 CDS Sfri_3482 NC_008345.1 4143763 4145400 R KEGG: psp:PSPPH_1148 hypothetical protein; hypothetical protein complement(4143763..4145400) Shewanella frigidimarina NCIMB 400 4280378 YP_752152.1 CDS Sfri_3483 NC_008345.1 4145409 4146542 R PFAM: phage integrase family protein; KEGG: psp:PSPPH_1149 site-specific recombinase, phage integrase family; phage integrase family protein complement(4145409..4146542) Shewanella frigidimarina NCIMB 400 4280379 YP_752153.1 CDS Sfri_3485 NC_008345.1 4147787 4148218 R hypothetical protein complement(4147787..4148218) Shewanella frigidimarina NCIMB 400 4280380 YP_752154.1 CDS Sfri_3486 NC_008345.1 4149067 4150539 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: plt:Plut_1820 RNA-directed DNA polymerase; RNA-directed DNA polymerase 4149067..4150539 Shewanella frigidimarina NCIMB 400 4280381 YP_752155.1 CDS Sfri_3488 NC_008345.1 4151239 4152897 R TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: tbd:Tbd_1341 mercuric reductase MerA; putative mercuric reductase complement(4151239..4152897) Shewanella frigidimarina NCIMB 400 4280382 YP_752156.1 CDS Sfri_3489 NC_008345.1 4152932 4153351 R PFAM: MerC mercury resistance protein; KEGG: neu:NE0840 putative mercury transport protein; putative mercury transport protein MerC complement(4152932..4153351) Shewanella frigidimarina NCIMB 400 4280383 YP_752157.1 CDS Sfri_3490 NC_008345.1 4153362 4153649 R TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: ilo:IL1645 periplasmic mercuric ion binding protein, MerP; mercuric transport protein periplasmic component complement(4153362..4153649) Shewanella frigidimarina NCIMB 400 4280384 YP_752158.1 CDS Sfri_3491 NC_008345.1 4153736 4154083 R PFAM: Mercuric transport protein MerT; KEGG: sty:HCM1.234c putative mercuric transport protein; mercuric transporter MerT complement(4153736..4154083) Shewanella frigidimarina NCIMB 400 4280385 YP_752159.1 CDS Sfri_3492 NC_008345.1 4154174 4154581 R TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: pol:Bpro_2232 transcriptional regulator, MerR family; transcriptional regulator, MerR family protein complement(4154174..4154581) Shewanella frigidimarina NCIMB 400 4280386 YP_752160.1 CDS Sfri_3493 NC_008345.1 4155116 4155754 R KEGG: cps:CPS_0186 hypothetical protein; hypothetical protein complement(4155116..4155754) Shewanella frigidimarina NCIMB 400 4280387 YP_752161.1 CDS Sfri_3494 NC_008345.1 4155751 4159269 R PFAM: phage integrase family protein; KEGG: cps:CPS_0185 putative site-specific recombinase, phage integrase family; phage integrase family protein complement(4155751..4159269) Shewanella frigidimarina NCIMB 400 4280388 YP_752162.1 CDS Sfri_3495 NC_008345.1 4159262 4160719 R PFAM: phage integrase family protein; KEGG: cps:CPS_0184 site-specific recombinase, phage integrase family; phage integrase family protein complement(4159262..4160719) Shewanella frigidimarina NCIMB 400 4280389 YP_752163.1 CDS Sfri_3496 NC_008345.1 4160793 4160909 R KEGG: son:SO0528 hypothetical protein; hypothetical protein complement(4160793..4160909) Shewanella frigidimarina NCIMB 400 4280390 YP_752164.1 CDS Sfri_3497 NC_008345.1 4161065 4161322 D hypothetical protein 4161065..4161322 Shewanella frigidimarina NCIMB 400 4280391 YP_752165.1 CDS Sfri_3498 NC_008345.1 4161389 4162048 R catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase complement(4161389..4162048) Shewanella frigidimarina NCIMB 400 4280392 YP_752166.1 CDS Sfri_3499 NC_008345.1 4162147 4162506 R KEGG: son:SO0581 hypothetical protein; hypothetical protein complement(4162147..4162506) Shewanella frigidimarina NCIMB 400 4280393 YP_752167.1 CDS Sfri_3500 NC_008345.1 4162787 4164619 D PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: son:SO0579 serine/threonine protein kinase, putative; serine/threonine protein kinase 4162787..4164619 Shewanella frigidimarina NCIMB 400 4280394 YP_752168.1 CDS Sfri_3501 NC_008345.1 4164731 4167127 R KEGG: son:SO0578 hypothetical protein; hypothetical protein complement(4164731..4167127) Shewanella frigidimarina NCIMB 400 4280395 YP_752169.1 CDS Sfri_3502 NC_008345.1 4167167 4170877 R KEGG: son:SO0577 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Cache domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase complement(4167167..4170877) Shewanella frigidimarina NCIMB 400 4280396 YP_752170.1 CDS Sfri_3503 NC_008345.1 4171139 4173403 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_0977 TonB-dependent receptor; TonB-dependent receptor complement(4171139..4173403) Shewanella frigidimarina NCIMB 400 4280397 YP_752171.1 CDS Sfri_3504 NC_008345.1 4173620 4174642 D PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cps:CPS_0978 transcription regulator, LacI family; transcriptional regulator, LacI family protein 4173620..4174642 Shewanella frigidimarina NCIMB 400 4280398 YP_752172.1 CDS Sfri_3505 NC_008345.1 4174754 4175992 D PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0981 hypothetical protein; major facilitator transporter 4174754..4175992 Shewanella frigidimarina NCIMB 400 4280399 YP_752173.1 CDS Sfri_3506 NC_008345.1 4176009 4177547 D PFAM: glycoside hydrolase, family 37; KEGG: cbu:CBU_1346 trehalase; Alpha,alpha-trehalase 4176009..4177547 Shewanella frigidimarina NCIMB 400 4280400 YP_752174.1 CDS Sfri_3507 NC_008345.1 4177617 4179011 R PFAM: PhoH family protein; SMART: AAA ATPase; Nucleotide binding protein, PINc; KEGG: son:SO0576 PhoH family protein; PhoH family protein complement(4177617..4179011) Shewanella frigidimarina NCIMB 400 4280401 YP_752175.1 CDS Sfri_3508 NC_008345.1 4179335 4182241 D transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 4179335..4182241 Shewanella frigidimarina NCIMB 400 4280402 YP_752176.1 CDS Sfri_3509 NC_008345.1 4182290 4183246 D KEGG: son:SO0573 hypothetical protein; hypothetical protein 4182290..4183246 Shewanella frigidimarina NCIMB 400 4280403 YP_752177.1 CDS Sfri_3510 NC_008345.1 4183298 4184104 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4183298..4184104) Shewanella frigidimarina NCIMB 400 4280404 YP_752178.1 CDS Sfri_3511 NC_008345.1 4184547 4185542 D PFAM: response regulator receiver; KEGG: son:SO0570 response regulator; CheC, inhibitor of MCP methylation 4184547..4185542 Shewanella frigidimarina NCIMB 400 4280405 YP_752179.1 CDS Sfri_3512 NC_008345.1 4185558 4186514 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO0569 sensory box/GGDEF family protein; diguanylate cyclase 4185558..4186514 Shewanella frigidimarina NCIMB 400 4280406 YP_752180.1 CDS Sfri_3513 NC_008345.1 4186598 4187029 R PFAM: protein of unknown function DUF1260; KEGG: son:SO0568 hypothetical protein; hypothetical protein complement(4186598..4187029) Shewanella frigidimarina NCIMB 400 4280407 YP_752181.1 CDS Sfri_3514 NC_008345.1 4187125 4187859 R KEGG: son:SO0567 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferases complement(4187125..4187859) Shewanella frigidimarina NCIMB 400 4280408 YP_752182.1 CDS Sfri_3515 NC_008345.1 4188007 4188792 R PFAM: ABC-3 protein; KEGG: son:SO0566 ABC 3 transport family protein; ABC-3 protein complement(4188007..4188792) Shewanella frigidimarina NCIMB 400 4280409 YP_752183.1 CDS Sfri_3516 NC_008345.1 4188797 4189663 R PFAM: periplasmic solute binding protein; KEGG: son:SO0565 adhesion protein, putative; periplasmic solute binding protein complement(4188797..4189663) Shewanella frigidimarina NCIMB 400 4280410 YP_752184.1 CDS Sfri_3517 NC_008345.1 4189686 4190879 R KEGG: son:SO0564 hypothetical protein; hypothetical protein complement(4189686..4190879) Shewanella frigidimarina NCIMB 400 4280411 YP_752185.1 CDS Sfri_3518 NC_008345.1 4190967 4191257 R KEGG: son:SO1155 hypothetical protein; hypothetical protein complement(4190967..4191257) Shewanella frigidimarina NCIMB 400 4280412 YP_752186.1 CDS Sfri_3519 NC_008345.1 4191484 4191609 D KEGG: son:SO0563 hypothetical protein; hypothetical protein 4191484..4191609 Shewanella frigidimarina NCIMB 400 4280413 YP_752187.1 CDS Sfri_3520 NC_008345.1 4191615 4191944 R KEGG: son:SO0562 hypothetical protein; hypothetical protein complement(4191615..4191944) Shewanella frigidimarina NCIMB 400 4280414 YP_752188.1 CDS Sfri_3521 NC_008345.1 4192069 4193712 D PFAM: MscS Mechanosensitive ion channel; KEGG: vfi:VFA1107 mechanosensitive ion channel; MscS mechanosensitive ion channel 4192069..4193712 Shewanella frigidimarina NCIMB 400 4280415 YP_752189.1 CDS Sfri_3522 NC_008345.1 4193794 4194660 R PFAM: MaoC domain protein dehydratase; KEGG: son:SO0559 MaoC domain protein; dehydratase complement(4193794..4194660) Shewanella frigidimarina NCIMB 400 4280416 YP_752190.1 CDS Sfri_3523 NC_008345.1 4194931 4195701 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0558 smtA protein; methyltransferase type 12 4194931..4195701 Shewanella frigidimarina NCIMB 400 4280417 YP_752191.1 CDS Sfri_3524 NC_008345.1 4195769 4196677 R PFAM: GumN family protein; KEGG: son:SO0557 hypothetical protein; GumN family protein complement(4195769..4196677) Shewanella frigidimarina NCIMB 400 4280418 YP_752192.1 CDS Sfri_3525 NC_008345.1 4196730 4197038 D KEGG: son:SO0556 hypothetical protein; hypothetical protein 4196730..4197038 Shewanella frigidimarina NCIMB 400 4280419 YP_752193.1 CDS Sfri_3527 NC_008345.1 4197456 4199201 D PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: son:SO0555 hypothetical protein; diguanylate cyclase/phosphodiesterase 4197456..4199201 Shewanella frigidimarina NCIMB 400 4280420 YP_752194.1 CDS Sfri_3528 NC_008345.1 4199196 4199720 R KEGG: son:SO0554 hypothetical protein; hypothetical protein complement(4199196..4199720) Shewanella frigidimarina NCIMB 400 4280421 YP_752195.1 CDS Sfri_3529 NC_008345.1 4199957 4200466 R KEGG: son:SO0551 hypothetical protein; hypothetical protein complement(4199957..4200466) Shewanella frigidimarina NCIMB 400 4280422 YP_752196.1 CDS Sfri_3530 NC_008345.1 4200524 4200931 D KEGG: son:SO0550 hypothetical protein; hypothetical protein 4200524..4200931 Shewanella frigidimarina NCIMB 400 4280423 YP_752197.1 CDS Sfri_3531 NC_008345.1 4201054 4201851 D PFAM: response regulator receiver; KEGG: son:SO0549 chemotaxis protein CheY/response regulator receiver domain protein; response regulator receiver protein 4201054..4201851 Shewanella frigidimarina NCIMB 400 4280424 YP_752198.1 CDS Sfri_3532 NC_008345.1 4202007 4202279 D PFAM: histone family protein DNA-binding protein; KEGG: son:SO0548 DNA-binding protein, HU family; histone family protein DNA-binding protein 4202007..4202279 Shewanella frigidimarina NCIMB 400 4280425 YP_752199.1 CDS Sfri_3533 NC_008345.1 4202674 4203360 D TIGRFAM: conserved hypothetical protein; KEGG: son:SO0547 hypothetical protein; hypothetical protein 4202674..4203360 Shewanella frigidimarina NCIMB 400 4280426 YP_752200.1 CDS Sfri_3534 NC_008345.1 4203680 4203856 D KEGG: son:SO0543 hypothetical protein; hypothetical protein 4203680..4203856 Shewanella frigidimarina NCIMB 400 4280427 YP_752201.1 CDS Sfri_3535 NC_008345.1 4203941 4204918 R KEGG: cjr:CJE1262 general glycosylation pathway protein; hypothetical protein complement(4203941..4204918) Shewanella frigidimarina NCIMB 400 4280428 YP_752202.1 CDS Sfri_3536 NC_008345.1 4205154 4206506 D TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1704; KEGG: son:SO0542 hypothetical protein; hypothetical protein 4205154..4206506 Shewanella frigidimarina NCIMB 400 4280429 YP_752203.1 CDS Sfri_3537 NC_008345.1 4206645 4207616 D KEGG: ppr:PBPRA2313 hypothetical membrane protein; hypothetical protein 4206645..4207616 Shewanella frigidimarina NCIMB 400 4280430 YP_752204.1 CDS Sfri_3538 NC_008345.1 4207613 4208584 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRA2312 putative ABC-type multidrug transport system, ATPase component; ABC transporter 4207613..4208584 Shewanella frigidimarina NCIMB 400 4280431 YP_752205.1 CDS Sfri_3539 NC_008345.1 4208596 4209705 D PFAM: ABC-2 type transporter; KEGG: ppr:PBPRA2311 putative transmembrane protein; ABC-2 type transporter 4208596..4209705 Shewanella frigidimarina NCIMB 400 4280432 YP_752206.1 CDS Sfri_3540 NC_008345.1 4209750 4210148 R hypothetical protein complement(4209750..4210148) Shewanella frigidimarina NCIMB 400 4280433 YP_752207.1 CDS Sfri_3541 NC_008345.1 4210259 4211632 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: ppr:PBPRB1320 putative sodium/alanine symporter; amino acid carrier protein complement(4210259..4211632) Shewanella frigidimarina NCIMB 400 4280434 YP_752208.1 CDS Sfri_3542 NC_008345.1 4211837 4212370 R KEGG: lic:LIC12691 hypothetical protein; hypothetical protein complement(4211837..4212370) Shewanella frigidimarina NCIMB 400 4280435 YP_752209.1 CDS Sfri_3543 NC_008345.1 4212598 4212963 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: ilo:IL0788 DSBH domain containing protein; cupin complement(4212598..4212963) Shewanella frigidimarina NCIMB 400 4280436 YP_752210.1 CDS Sfri_3544 NC_008345.1 4213006 4213284 R KEGG: sdn:Sden_0645 hypothetical protein; hypothetical protein complement(4213006..4213284) Shewanella frigidimarina NCIMB 400 4280437 YP_752211.1 CDS Sfri_3545 NC_008345.1 4213464 4214582 R KEGG: son:SO4047 cytochrome c family protein; cytochrome c family protein complement(4213464..4214582) Shewanella frigidimarina NCIMB 400 4280438 YP_752212.1 CDS Sfri_3546 NC_008345.1 4214593 4215225 R KEGG: son:SO4048 cytochrome c family protein; cytochrome c family protein complement(4214593..4215225) Shewanella frigidimarina NCIMB 400 4280439 YP_752213.1 CDS metF NC_008345.1 4215382 4216266 R MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase complement(4215382..4216266) Shewanella frigidimarina NCIMB 400 4280440 YP_752214.1 CDS Sfri_3548 NC_008345.1 4216788 4217279 D PFAM: protein of unknown function DUF1097; KEGG: son:SO3047 hypothetical protein; hypothetical protein 4216788..4217279 Shewanella frigidimarina NCIMB 400 4280441 YP_752215.1 CDS Sfri_3549 NC_008345.1 4217431 4217679 R KEGG: cps:CPS_3145 hypothetical protein; hypothetical protein complement(4217431..4217679) Shewanella frigidimarina NCIMB 400 4280442 YP_752216.1 CDS metL NC_008345.1 4217805 4220198 R multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II complement(4217805..4220198) Shewanella frigidimarina NCIMB 400 4280443 YP_752217.1 CDS Sfri_3551 NC_008345.1 4220330 4221499 R KEGG: son:SO4056 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-succinylhomoserine (thiol)-lyase complement(4220330..4221499) Shewanella frigidimarina NCIMB 400 4280444 YP_752218.1 CDS Sfri_3552 NC_008345.1 4221709 4222023 D when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4221709..4222023 Shewanella frigidimarina NCIMB 400 4280445 YP_752219.1 CDS Sfri_3553 NC_008345.1 4222098 4222838 D PFAM: protein of unknown function DUF81; KEGG: son:SO4058 hypothetical protein; hypothetical protein 4222098..4222838 Shewanella frigidimarina NCIMB 400 4280446 YP_752220.1 CDS Sfri_3554 NC_008345.1 4223195 4223524 D KEGG: son:SO4142 cytochrome c family protein; cytochrome c family protein 4223195..4223524 Shewanella frigidimarina NCIMB 400 4280447 YP_752221.1 CDS Sfri_3555 NC_008345.1 4223673 4225385 D KEGG: son:SO4143 hypothetical protein; hypothetical protein 4223673..4225385 Shewanella frigidimarina NCIMB 400 4280448 YP_752222.1 CDS Sfri_3556 NC_008345.1 4225448 4226842 D KEGG: son:SO4144 cytochrome c, putative; cytochrome c, putative 4225448..4226842 Shewanella frigidimarina NCIMB 400 4280449 YP_752223.1 CDS Sfri_3557 NC_008345.1 4226937 4227917 R PFAM: pseudouridine synthase; KEGG: rfr:Rfer_1895 pseudouridine synthase; pseudouridine synthase complement(4226937..4227917) Shewanella frigidimarina NCIMB 400 4280450 YP_752224.1 CDS Sfri_3558 NC_008345.1 4228029 4228607 R SMART: peptidase S16, lon domain protein; KEGG: son:SO4182 ATP-dependent protease La (LON) domain protein, putative; peptidase S16, lon domain-containing protein complement(4228029..4228607) Shewanella frigidimarina NCIMB 400 4280451 YP_752225.1 CDS Sfri_3559 NC_008345.1 4228821 4229876 R KEGG: ilo:IL1449 alpha/beta superfamily hydrolase; alpha/beta fold family hydrolase complement(4228821..4229876) Shewanella frigidimarina NCIMB 400 4280452 YP_752226.1 CDS Sfri_3560 NC_008345.1 4229982 4230443 D PFAM: conserved hypothetical protein 22; KEGG: son:SO4189 hypothetical protein; hypothetical protein 4229982..4230443 Shewanella frigidimarina NCIMB 400 4280453 YP_752227.1 CDS Sfri_3561 NC_008345.1 4230824 4231747 D catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 4230824..4231747 Shewanella frigidimarina NCIMB 400 4280454 YP_752228.1 CDS Sfri_3562 NC_008345.1 4231797 4232525 R PFAM: Integrase, catalytic region; KEGG: par:Psyc_0937 putative transposase OrfB; integrase catalytic subunit complement(4231797..4232525) Shewanella frigidimarina NCIMB 400 4280455 YP_752229.1 CDS Sfri_3563 NC_008345.1 4232630 4233025 R KEGG: dde:Dde_2987 transposase; transposase complement(4232630..4233025) Shewanella frigidimarina NCIMB 400 4280456 YP_752230.1 CDS Sfri_3564 NC_008345.1 4233139 4233543 R KEGG: son:SO0454 hypothetical protein; hypothetical protein complement(4233139..4233543) Shewanella frigidimarina NCIMB 400 4280457 YP_752231.1 CDS Sfri_3565 NC_008345.1 4233543 4235594 R TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO0455 hypothetical transporter; TRAP transporter, 4TM/12TM fusion protein complement(4233543..4235594) Shewanella frigidimarina NCIMB 400 4280458 YP_752232.1 CDS Sfri_3566 NC_008345.1 4235780 4236733 R TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: son:SO0456 immunogenic-related protein; TRAP transporter solute receptor, TAXI family protein complement(4235780..4236733) Shewanella frigidimarina NCIMB 400 4280459 YP_752233.1 CDS Sfri_3567 NC_008345.1 4237065 4238339 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pha:PSHAa2187 hypothetical protein; glycerophosphoryl diester phosphodiesterase complement(4237065..4238339) Shewanella frigidimarina NCIMB 400 4280460 YP_752234.1 CDS Sfri_3568 NC_008345.1 4238576 4239217 D KEGG: pha:PSHAb0519 hypothetical protein; hypothetical protein 4238576..4239217 Shewanella frigidimarina NCIMB 400 4280461 YP_752235.1 CDS mtgA NC_008345.1 4239396 4240076 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 4239396..4240076 Shewanella frigidimarina NCIMB 400 4280462 YP_752236.1 CDS Sfri_3570 NC_008345.1 4240308 4242284 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: eba:ebA5328 conserved hypothetical protein, predicted radical-SAM emzyme; radical SAM domain-containing protein 4240308..4242284 Shewanella frigidimarina NCIMB 400 4280463 YP_752237.1 CDS Sfri_3571 NC_008345.1 4242503 4242937 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: ppr:PBPRB1018 putative deoxycytidylate deaminase; zinc-binding CMP/dCMP deaminase 4242503..4242937 Shewanella frigidimarina NCIMB 400 4280464 YP_752238.1 CDS Sfri_3572 NC_008345.1 4243124 4243534 R hypothetical protein complement(4243124..4243534) Shewanella frigidimarina NCIMB 400 4280465 YP_752239.1 CDS Sfri_3573 NC_008345.1 4243726 4244271 R hypothetical protein complement(4243726..4244271) Shewanella frigidimarina NCIMB 400 4280466 YP_752240.1 CDS Sfri_3574 NC_008345.1 4244714 4244995 R KEGG: noc:Noc_0526 hypothetical protein; hypothetical protein complement(4244714..4244995) Shewanella frigidimarina NCIMB 400 4280467 YP_752241.1 CDS Sfri_3575 NC_008345.1 4245077 4245424 R hypothetical protein complement(4245077..4245424) Shewanella frigidimarina NCIMB 400 4280468 YP_752242.1 CDS Sfri_3576 NC_008345.1 4246303 4246884 D KEGG: son:SO0090 hypothetical protein; hypothetical protein 4246303..4246884 Shewanella frigidimarina NCIMB 400 4280469 YP_752243.1 CDS Sfri_3577 NC_008345.1 4247424 4248398 D KEGG: cps:CPS_1152 hypothetical protein; hypothetical protein 4247424..4248398 Shewanella frigidimarina NCIMB 400 4280470 YP_752244.1 CDS Sfri_3578 NC_008345.1 4248443 4249510 D catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4248443..4249510 Shewanella frigidimarina NCIMB 400 4280471 YP_752245.1 CDS Sfri_3579 NC_008345.1 4249559 4250539 R KEGG: pca:Pcar_3022 probable integral membrane protein; putative integral membrane protein complement(4249559..4250539) Shewanella frigidimarina NCIMB 400 4280472 YP_752246.1 CDS Sfri_3580 NC_008345.1 4250827 4253511 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_3993 TonB-dependent receptor; TonB-dependent receptor, plug complement(4250827..4253511) Shewanella frigidimarina NCIMB 400 4280473 YP_752247.1 CDS Sfri_3581 NC_008345.1 4253596 4256430 R KEGG: cps:CPS_3994 putative lipoprotein; putative lipoprotein complement(4253596..4256430) Shewanella frigidimarina NCIMB 400 4280474 YP_752248.1 CDS Sfri_3582 NC_008345.1 4256648 4257022 R hypothetical protein complement(4256648..4257022) Shewanella frigidimarina NCIMB 400 4280475 YP_752249.1 CDS Sfri_3583 NC_008345.1 4257326 4258534 D PFAM: sodium/hydrogen exchanger; KEGG: bfs:BF2202 putative Na+/H+ exchanger; sodium/hydrogen exchanger 4257326..4258534 Shewanella frigidimarina NCIMB 400 4280476 YP_752250.1 CDS Sfri_3584 NC_008345.1 4258596 4259813 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; peptidase M56, BlaR1; KEGG: xac:XAC3362 TonB-like protein; TonB family protein complement(4258596..4259813) Shewanella frigidimarina NCIMB 400 4280477 YP_752251.1 CDS Sfri_3585 NC_008345.1 4259813 4260187 R PFAM: Penicillinase repressor; KEGG: ccr:CC1640 transcriptional regulator, BlaI family; transcriptional repressor, CopY family protein complement(4259813..4260187) Shewanella frigidimarina NCIMB 400 4280478 YP_752252.1 CDS Sfri_3586 NC_008345.1 4260376 4263564 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SO0520 heavy metal efflux pump, CzcA family; heavy metal efflux pump, CzcA family protein complement(4260376..4263564) Shewanella frigidimarina NCIMB 400 4280479 YP_752253.1 CDS Sfri_3587 NC_008345.1 4263581 4264540 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO0519 cation efflux protein, putative; RND family efflux transporter MFP subunit complement(4263581..4264540) Shewanella frigidimarina NCIMB 400 4280480 YP_752254.1 CDS Sfri_3588 NC_008345.1 4264528 4264947 R hypothetical protein complement(4264528..4264947) Shewanella frigidimarina NCIMB 400 4280481 YP_752255.1 CDS Sfri_3589 NC_008345.1 4265053 4265463 R KEGG: son:SO0516 hypothetical protein; hypothetical protein complement(4265053..4265463) Shewanella frigidimarina NCIMB 400 4280482 YP_752256.1 CDS Sfri_3590 NC_008345.1 4265508 4265684 R KEGG: son:SO0515 hypothetical protein; hypothetical protein complement(4265508..4265684) Shewanella frigidimarina NCIMB 400 4280483 YP_752257.1 CDS Sfri_3591 NC_008345.1 4265855 4266220 R KEGG: son:SO0514 hypothetical protein; hypothetical protein complement(4265855..4266220) Shewanella frigidimarina NCIMB 400 4280484 YP_752258.1 CDS Sfri_3592 NC_008345.1 4266550 4266966 D PFAM: Class I peptide chain release factor; KEGG: son:SO0513 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein 4266550..4266966 Shewanella frigidimarina NCIMB 400 4280485 YP_752259.1 CDS Sfri_3593 NC_008345.1 4267191 4267637 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 4267191..4267637 Shewanella frigidimarina NCIMB 400 4280486 YP_752260.1 CDS Sfri_3594 NC_008345.1 4267663 4268055 D KEGG: pha:PSHAa1486 hypothetical protein; hypothetical protein 4267663..4268055 Shewanella frigidimarina NCIMB 400 4280487 YP_752261.1 CDS Sfri_3595 NC_008345.1 4268147 4269154 D KEGG: son:SO2451 hypothetical protein; hypothetical protein 4268147..4269154 Shewanella frigidimarina NCIMB 400 4280488 YP_752262.1 CDS Sfri_3596 NC_008345.1 4269258 4271021 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Alkaline phosphatase; KEGG: son:SO0806 alkaline phosphatase, putative; twin-arginine translocation pathway signal complement(4269258..4271021) Shewanella frigidimarina NCIMB 400 4280489 YP_752263.1 CDS Sfri_3597 NC_008345.1 4271344 4271766 D PFAM: OsmC family protein; KEGG: vvy:VVA1125 predicted redox protein; OsmC family protein 4271344..4271766 Shewanella frigidimarina NCIMB 400 4280490 YP_752264.1 CDS Sfri_3598 NC_008345.1 4271900 4272910 R PFAM: luciferase family protein; KEGG: pha:PSHAb0540 putative alkanal monooxygenase (FMN-linked); luciferase family protein complement(4271900..4272910) Shewanella frigidimarina NCIMB 400 4280491 YP_752265.1 CDS Sfri_3599 NC_008345.1 4273000 4273524 R KEGG: son:SO1504 hypothetical protein; hypothetical protein complement(4273000..4273524) Shewanella frigidimarina NCIMB 400 4280492 YP_752266.1 CDS Sfri_3600 NC_008345.1 4273718 4274485 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cps:CPS_0824 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(4273718..4274485) Shewanella frigidimarina NCIMB 400 4280493 YP_752267.1 CDS Sfri_3601 NC_008345.1 4274591 4274926 D PFAM: helix-turn-helix, HxlR type; KEGG: cps:CPS_0823 transcriptional regulator; transcriptional regulator, HxlR family protein 4274591..4274926 Shewanella frigidimarina NCIMB 400 4280494 YP_752268.1 CDS Sfri_3602 NC_008345.1 4274972 4276444 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: son:SO0541 metallo-beta-lactamase family protein; RNA-metabolising metallo-beta-lactamase complement(4274972..4276444) Shewanella frigidimarina NCIMB 400 4280495 YP_752269.1 CDS Sfri_3603 NC_008345.1 4276814 4278022 D PFAM: porin, Gram-negative type; KEGG: son:SO1821 outer membrane porin, putative; porin 4276814..4278022 Shewanella frigidimarina NCIMB 400 4280496 YP_752270.1 CDS Sfri_3604 NC_008345.1 4278189 4278734 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO2572 peptidyl-prolyl cis-trans isomerase B; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(4278189..4278734) Shewanella frigidimarina NCIMB 400 4280497 YP_752271.1 CDS Sfri_3605 NC_008345.1 4279047 4280387 R KEGG: pha:PSHAa2344 hydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(4279047..4280387) Shewanella frigidimarina NCIMB 400 4280498 YP_752272.1 CDS Sfri_3606 NC_008345.1 4280546 4281070 D PFAM: GCN5-related N-acetyltransferase; KEGG: rba:RB2931 conserved hypothetical protein-putative acetyltransferase; N-acetyltransferase GCN5 4280546..4281070 Shewanella frigidimarina NCIMB 400 4280499 YP_752273.1 CDS Sfri_3607 NC_008345.1 4281646 4283508 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: vvy:VVA0651 GGDEF family protein; GAF sensor-containing diguanylate cyclase/phosphodiesterase 4281646..4283508 Shewanella frigidimarina NCIMB 400 4280500 YP_752274.1 CDS Sfri_3608 NC_008345.1 4283613 4284824 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO1364 iron-sulfur cluster-binding protein; oxidoreductase FAD-binding subunit complement(4283613..4284824) Shewanella frigidimarina NCIMB 400 4280501 YP_752275.1 CDS Sfri_3609 NC_008345.1 4284938 4286596 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(4284938..4286596) Shewanella frigidimarina NCIMB 400 4280502 YP_752276.1 CDS Sfri_3610 NC_008345.1 4286968 4287954 R KEGG: vpa:VP0375 putative lipoprotein; hypothetical protein complement(4286968..4287954) Shewanella frigidimarina NCIMB 400 4280503 YP_752277.1 CDS Sfri_3611 NC_008345.1 4288242 4288931 D KEGG: son:SO0114 hypothetical protein; hypothetical protein 4288242..4288931 Shewanella frigidimarina NCIMB 400 4280504 YP_752278.1 CDS Sfri_3612 NC_008345.1 4289033 4289293 R KEGG: son:SO2181 hypothetical protein; hypothetical protein complement(4289033..4289293) Shewanella frigidimarina NCIMB 400 4280505 YP_752279.1 CDS Sfri_3613 NC_008345.1 4289579 4291735 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO3564 peptidyl-dipeptidase Dcp; peptidyl-dipeptidase Dcp 4289579..4291735 Shewanella frigidimarina NCIMB 400 4280506 YP_752280.1 CDS Sfri_3614 NC_008345.1 4292507 4293628 D hypothetical protein 4292507..4293628 Shewanella frigidimarina NCIMB 400 4280507 YP_752281.1 CDS Sfri_3615 NC_008345.1 4293862 4294674 R PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit complement(4293862..4294674) Shewanella frigidimarina NCIMB 400 4280508 YP_752282.1 CDS Sfri_3616 NC_008345.1 4294728 4295039 R PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein complement(4294728..4295039) Shewanella frigidimarina NCIMB 400 4280509 YP_752283.1 CDS Sfri_3617 NC_008345.1 4295394 4296050 D hypothetical protein 4295394..4296050 Shewanella frigidimarina NCIMB 400 4280510 YP_752284.1 CDS Sfri_3618 NC_008345.1 4296382 4296840 D KEGG: xcb:XC_2154 hypothetical protein; hypothetical protein 4296382..4296840 Shewanella frigidimarina NCIMB 400 4280511 YP_752285.1 CDS Sfri_3619 NC_008345.1 4296854 4297303 D PFAM: protein of unknown function DUF1499; KEGG: dps:DP1404 hypothetical protein; hypothetical protein 4296854..4297303 Shewanella frigidimarina NCIMB 400 4280512 YP_752286.1 CDS Sfri_3620 NC_008345.1 4297528 4297719 D KEGG: pha:PSHAb0267 hypothetical protein; hypothetical protein 4297528..4297719 Shewanella frigidimarina NCIMB 400 4280513 YP_752287.1 CDS Sfri_3621 NC_008345.1 4297940 4298536 R PFAM: DSBA oxidoreductase; KEGG: reu:Reut_A2829 DsbA oxidoreductase; DSBA oxidoreductase complement(4297940..4298536) Shewanella frigidimarina NCIMB 400 4280514 YP_752288.1 CDS Sfri_3622 NC_008345.1 4299034 4300797 R PFAM: band 7 protein; KEGG: son:SO1377 hypothetical protein; hypothetical protein complement(4299034..4300797) Shewanella frigidimarina NCIMB 400 4280515 YP_752289.1 CDS Sfri_3623 NC_008345.1 4300892 4301530 R PFAM: protein of unknown function DUF1449; KEGG: son:SO1376 hypothetical protein; hypothetical protein complement(4300892..4301530) Shewanella frigidimarina NCIMB 400 4280516 YP_752290.1 CDS Sfri_3624 NC_008345.1 4301903 4302781 R PFAM: alpha/beta hydrolase fold; KEGG: pfl:PFL_0960 hydrolase, alpha/beta fold family; alpha/beta hydrolase complement(4301903..4302781) Shewanella frigidimarina NCIMB 400 4280517 YP_752291.1 CDS Sfri_3625 NC_008345.1 4303177 4303920 D PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_1586 protein of unknown function DUF81; hypothetical protein 4303177..4303920 Shewanella frigidimarina NCIMB 400 4280518 YP_752292.1 CDS Sfri_3626 NC_008345.1 4303980 4304609 D KEGG: son:SO0492 hypothetical flavoprotein oxygenase; flavoprotein oxygenase 4303980..4304609 Shewanella frigidimarina NCIMB 400 4280519 YP_752293.1 CDS Sfri_3627 NC_008345.1 4304692 4305681 D KEGG: vfi:VF1129 hypothetical protein; hypothetical protein 4304692..4305681 Shewanella frigidimarina NCIMB 400 4280520 YP_752294.1 CDS Sfri_3628 NC_008345.1 4305902 4307068 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vvy:VVA0239 hypothetical protein; diguanylate cyclase 4305902..4307068 Shewanella frigidimarina NCIMB 400 4280521 YP_752295.1 CDS Sfri_3629 NC_008345.1 4307134 4307637 R KEGG: ppr:PBPRB1268 hypothetical protein; glycine cleavage system regulatory protein-like protein complement(4307134..4307637) Shewanella frigidimarina NCIMB 400 4280522 YP_752296.1 CDS Sfri_3630 NC_008345.1 4308330 4308959 D PFAM: GPR1/FUN34/yaaH family protein; KEGG: son:SO3588 gpr1/fun34/YaaH family protein; GPR1/FUN34/yaaH family protein 4308330..4308959 Shewanella frigidimarina NCIMB 400 4280523 YP_752297.1 CDS Sfri_3631 NC_008345.1 4309027 4309545 R KEGG: son:SO0941 hypothetical protein; hypothetical protein complement(4309027..4309545) Shewanella frigidimarina NCIMB 400 4280524 YP_752298.1 CDS Sfri_3632 NC_008345.1 4309550 4310347 R PFAM: transcriptional regulator domain protein; KEGG: son:SO0940 transcriptional regulator-related protein; response regulator receiver protein complement(4309550..4310347) Shewanella frigidimarina NCIMB 400 4280525 YP_752299.1 CDS Sfri_3633 NC_008345.1 4310807 4311628 D KEGG: son:SO0939 cytochrome c, putative; cytochrome c, putative 4310807..4311628 Shewanella frigidimarina NCIMB 400 4280526 YP_752300.1 CDS Sfri_3634 NC_008345.1 4311639 4312223 D KEGG: son:SO0938 hypothetical protein; hypothetical protein 4311639..4312223 Shewanella frigidimarina NCIMB 400 4280527 YP_752301.1 CDS Sfri_3635 NC_008345.1 4312473 4314566 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO2047 prolyl oligopeptidase family protein; prolyl oligopeptidase complement(4312473..4314566) Shewanella frigidimarina NCIMB 400 4280528 YP_752302.1 CDS Sfri_3636 NC_008345.1 4314795 4315073 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ppr:PBPRB0852 putative peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase 4314795..4315073 Shewanella frigidimarina NCIMB 400 4280529 YP_752303.1 CDS Sfri_3637 NC_008345.1 4315248 4315973 R KEGG: neu:NE1275 hypothetical protein; hypothetical protein complement(4315248..4315973) Shewanella frigidimarina NCIMB 400 4280530 YP_752304.1 CDS Sfri_3638 NC_008345.1 4316217 4318043 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: cps:CPS_0753 alkaline serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 4316217..4318043 Shewanella frigidimarina NCIMB 400 4280531 YP_752305.1 CDS Sfri_3639 NC_008345.1 4318432 4319193 R hypothetical protein complement(4318432..4319193) Shewanella frigidimarina NCIMB 400 4280532 YP_752306.1 CDS Sfri_3640 NC_008345.1 4319604 4319855 D KEGG: son:SO0721 hypothetical protein; hypothetical protein 4319604..4319855 Shewanella frigidimarina NCIMB 400 4280533 YP_752307.1 CDS Sfri_3641 NC_008345.1 4319937 4320956 R hypothetical protein complement(4319937..4320956) Shewanella frigidimarina NCIMB 400 4280534 YP_752308.1 CDS Sfri_3642 NC_008345.1 4320961 4323192 R PFAM: peptidase domain protein; PGAP1 family protein; KEGG: vvy:VVA0946 hypothetical protein; peptidase domain-containing protein complement(4320961..4323192) Shewanella frigidimarina NCIMB 400 4280535 YP_752309.1 CDS Sfri_3643 NC_008345.1 4323288 4323779 R PFAM: regulatory protein, MarR; KEGG: vpa:VP1763 transcriptional regulator, MarR family; transcriptional regulator, MarR family protein complement(4323288..4323779) Shewanella frigidimarina NCIMB 400 4280536 YP_752310.1 CDS Sfri_3644 NC_008345.1 4323926 4324807 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: vpa:VP1764 putative transmembrane protein; hypothetical protein 4323926..4324807 Shewanella frigidimarina NCIMB 400 4280537 YP_752311.1 CDS Sfri_3645 NC_008345.1 4324852 4325364 R KEGG: cps:CPS_0512 putative lipoprotein; putative lipoprotein complement(4324852..4325364) Shewanella frigidimarina NCIMB 400 4280538 YP_752312.1 CDS Sfri_3646 NC_008345.1 4325520 4325906 R PFAM: Carboxymuconolactone decarboxylase; KEGG: pae:PA4486 4-carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase complement(4325520..4325906) Shewanella frigidimarina NCIMB 400 4280539 YP_752313.1 CDS Sfri_3647 NC_008345.1 4326215 4326829 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: son:SO0733 cold shock domain family protein; cold-shock DNA-binding domain-containing protein 4326215..4326829 Shewanella frigidimarina NCIMB 400 4280540 YP_752314.1 CDS Sfri_3648 NC_008345.1 4326972 4327973 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: pae:PA2096 probable transcriptional regulator; AraC family transcriptional regulator complement(4326972..4327973) Shewanella frigidimarina NCIMB 400 4280541 YP_752315.1 CDS Sfri_3649 NC_008345.1 4328194 4329660 D KEGG: bur:Bcep18194_C7122 flavin-containing monooxygenase FMO; flavin-containing monooxygenase FMO 4328194..4329660 Shewanella frigidimarina NCIMB 400 4280542 YP_752316.1 CDS Sfri_3650 NC_008345.1 4329749 4330519 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: pae:PA2099 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 4329749..4330519 Shewanella frigidimarina NCIMB 400 4280543 YP_752317.1 CDS Sfri_3651 NC_008345.1 4330564 4331685 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rpa:RPA2425 putative lipase/esterase; alpha/beta hydrolase domain-containing protein 4330564..4331685 Shewanella frigidimarina NCIMB 400 4280544 YP_752318.1 CDS Sfri_3652 NC_008345.1 4331882 4332160 D hypothetical protein 4331882..4332160 Shewanella frigidimarina NCIMB 400 4280545 YP_752319.1 CDS Sfri_3653 NC_008345.1 4332446 4333195 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4069 hypothetical protein; methyltransferase type 12 complement(4332446..4333195) Shewanella frigidimarina NCIMB 400 4280546 YP_752320.1 CDS Sfri_3654 NC_008345.1 4333711 4334157 R hypothetical protein complement(4333711..4334157) Shewanella frigidimarina NCIMB 400 4280547 YP_752321.1 CDS Sfri_3655 NC_008345.1 4334432 4334920 D PFAM: Uncharacterized protein UPF0114; KEGG: son:SO3997 hypothetical protein; hypothetical protein 4334432..4334920 Shewanella frigidimarina NCIMB 400 4280548 YP_752322.1 CDS Sfri_3656 NC_008345.1 4334985 4335221 R PFAM: helix-turn-helix domain protein; KEGG: son:SO0705 transcriptional regulator, Cro/CI family; transcriptional regulator, XRE family protein complement(4334985..4335221) Shewanella frigidimarina NCIMB 400 4280549 YP_752323.1 CDS Sfri_3657 NC_008345.1 4335461 4336516 D PFAM: NERD domain protein; KEGG: pha:PSHAb0100 putative orphan protein; NERD domain-containing protein 4335461..4336516 Shewanella frigidimarina NCIMB 400 4280550 YP_752324.1 CDS Sfri_3658 NC_008345.1 4336551 4337279 D PFAM: protein of unknown function DUF88; KEGG: syn:slr1870 hypothetical protein; hypothetical protein 4336551..4337279 Shewanella frigidimarina NCIMB 400 4280551 YP_752325.1 CDS Sfri_3659 NC_008345.1 4337530 4339533 R KEGG: pgi:PG1436 ATPase, putative; ATPase complement(4337530..4339533) Shewanella frigidimarina NCIMB 400 4280552 YP_752326.1 CDS groEL NC_008345.1 4339965 4341602 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(4339965..4341602) Shewanella frigidimarina NCIMB 400 4280553 YP_752327.1 CDS groES NC_008345.1 4341660 4341950 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(4341660..4341950) Shewanella frigidimarina NCIMB 400 4280554 YP_752328.1 CDS Sfri_3662 NC_008345.1 4342165 4343595 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO0702 MATE efflux family protein; MATE efflux family protein 4342165..4343595 Shewanella frigidimarina NCIMB 400 4280555 YP_752329.1 CDS Sfri_3663 NC_008345.1 4343686 4344063 D KEGG: pha:PSHAb0447 hypothetical protein; hypothetical protein 4343686..4344063 Shewanella frigidimarina NCIMB 400 4280556 YP_752330.1 CDS Sfri_3664 NC_008345.1 4344259 4344906 R PFAM: FxsA cytoplasmic membrane protein; KEGG: son:SO0698 FxsA protein; FxsA cytoplasmic membrane protein complement(4344259..4344906) Shewanella frigidimarina NCIMB 400 4280557 YP_752331.1 CDS Sfri_3665 NC_008345.1 4345135 4345461 D PFAM: CutA1 divalent ion tolerance protein; KEGG: son:SO0697 periplasmic divalent cation tolerance protein CutA; CutA1 divalent ion tolerance protein 4345135..4345461 Shewanella frigidimarina NCIMB 400 4280558 YP_752332.1 CDS dipZ NC_008345.1 4345434 4347320 D two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 4345434..4347320 Shewanella frigidimarina NCIMB 400 4280559 YP_752333.1 CDS Sfri_3667 NC_008345.1 4347773 4349443 D PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: son:SO0695 glutathione-regulated potassium-efflux system protein KefC, putative; sodium/hydrogen exchanger 4347773..4349443 Shewanella frigidimarina NCIMB 400 4280560 YP_752334.1 CDS Sfri_3668 NC_008345.1 4349616 4350758 D KEGG: son:SO0694 galactokinase; TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; galactokinase 4349616..4350758 Shewanella frigidimarina NCIMB 400 4280561 YP_752335.1 CDS Sfri_3669 NC_008345.1 4350784 4351818 D PFAM: Aldose 1-epimerase; KEGG: son:SO0693 aldose 1-epimerase; aldose 1-epimerase 4350784..4351818 Shewanella frigidimarina NCIMB 400 4280562 YP_752336.1 CDS Sfri_3670 NC_008345.1 4351808 4352221 D KEGG: vpa:VPA0336 hypothetical protein; hypothetical protein 4351808..4352221 Shewanella frigidimarina NCIMB 400 4280563 YP_752337.1 CDS Sfri_3671 NC_008345.1 4352340 4352777 R KEGG: son:SO0691 hypothetical protein; hypothetical protein complement(4352340..4352777) Shewanella frigidimarina NCIMB 400 4280564 YP_752338.1 CDS Sfri_3672 NC_008345.1 4353154 4354167 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0640 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase complement(4353154..4354167) Shewanella frigidimarina NCIMB 400 4280565 YP_752339.1 CDS Sfri_3673 NC_008345.1 4354363 4355154 D KEGG: cps:CPS_4859 putative cation efflux protein; putative cation efflux protein 4354363..4355154 Shewanella frigidimarina NCIMB 400 4280566 YP_752340.1 CDS Sfri_3674 NC_008345.1 4355323 4357050 R putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM complement(4355323..4357050) Shewanella frigidimarina NCIMB 400 4280567 YP_752341.1 CDS Sfri_3675 NC_008345.1 4357338 4358594 R PFAM: histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pfl:PFL_5112 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase complement(4357338..4358594) Shewanella frigidimarina NCIMB 400 4280568 YP_752342.1 CDS Sfri_3676 NC_008345.1 4358653 4359345 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_04130 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two component transcriptional regulator, winged helix family protein complement(4358653..4359345) Shewanella frigidimarina NCIMB 400 4280569 YP_752343.1 CDS Sfri_3677 NC_008345.1 4359366 4362527 R PFAM: acriflavin resistance protein; KEGG: hch:HCH_04131 cation/multidrug efflux pump; acriflavin resistance protein complement(4359366..4362527) Shewanella frigidimarina NCIMB 400 4280570 YP_752344.1 CDS Sfri_3678 NC_008345.1 4362530 4363750 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: hch:HCH_04132 membrane-fusion protein; RND family efflux transporter MFP subunit complement(4362530..4363750) Shewanella frigidimarina NCIMB 400 4280571 YP_752345.1 CDS Sfri_3679 NC_008345.1 4363740 4365143 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: hch:HCH_04133 outer membrane protein; RND efflux system, outer membrane lipoprotein, NodT family protein complement(4363740..4365143) Shewanella frigidimarina NCIMB 400 4280572 YP_752346.1 CDS Sfri_3680 NC_008345.1 4365418 4366326 R PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC1175 haloalkane dehalogenase, putative; haloalkane dehalogenase complement(4365418..4366326) Shewanella frigidimarina NCIMB 400 4280573 YP_752347.1 CDS Sfri_3681 NC_008345.1 4366530 4366976 R KEGG: son:SO1432 hypothetical protein; hypothetical protein complement(4366530..4366976) Shewanella frigidimarina NCIMB 400 4280574 YP_752348.1 CDS Sfri_3682 NC_008345.1 4366991 4367650 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO1431 hypothetical protein; cytoplasmic chaperone TorD family protein complement(4366991..4367650) Shewanella frigidimarina NCIMB 400 4280575 YP_752349.1 CDS Sfri_3683 NC_008345.1 4367708 4368370 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1430 anaerobic dimethyl sulfoxide reductase, B subunit; 4Fe-4S ferredoxin complement(4367708..4368370) Shewanella frigidimarina NCIMB 400 4280576 YP_752350.1 CDS Sfri_3684 NC_008345.1 4368385 4370901 R TIGRFAM: Twin-arginine translocation pathway signal; anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO1429 anaerobic dimethyl sulfoxide reductase, A subunit; anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein complement(4368385..4370901) Shewanella frigidimarina NCIMB 400 4280577 YP_752351.1 CDS Sfri_3685 NC_008345.1 4370935 4372944 R KEGG: son:SO1428 outer membrane protein; outer membrane protein complement(4370935..4372944) Shewanella frigidimarina NCIMB 400 4280578 YP_752352.1 CDS Sfri_3686 NC_008345.1 4372959 4373903 R TIGRFAM: cytochrome C family protein; KEGG: son:SO1427 decaheme cytochrome c; cytochrome C family protein complement(4372959..4373903) Shewanella frigidimarina NCIMB 400 4280579 YP_752353.1 CDS Sfri_3687 NC_008345.1 4374348 4375142 D hypothetical protein 4374348..4375142 Shewanella frigidimarina NCIMB 400 4280580 YP_752354.1 CDS Sfri_3688 NC_008345.1 4375464 4376849 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: ade:Adeh_2101 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma-54-specific transcriptional regulator complement(4375464..4376849) Shewanella frigidimarina NCIMB 400 4280581 YP_752355.1 CDS Sfri_3689 NC_008345.1 4376853 4378820 R PFAM: ATP-binding region, ATPase domain protein domain protein; SMART: extracellular solute-binding protein, family 3; KEGG: gsu:GSU3419 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase complement(4376853..4378820) Shewanella frigidimarina NCIMB 400 4280582 YP_752356.1 CDS Sfri_3690 NC_008345.1 4379265 4381016 D KEGG: son:SO0970 fumarate reductase flavoprotein subunit precursor; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; flavocytochrome c 4379265..4381016 Shewanella frigidimarina NCIMB 400 4280583 YP_752357.1 CDS Sfri_3691 NC_008345.1 4381420 4381827 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppr:PBPRA1918 putative glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 4381420..4381827 Shewanella frigidimarina NCIMB 400 4280584 YP_752358.1 CDS Sfri_3692 NC_008345.1 4382030 4383283 R PFAM: outer membrane porin; KEGG: tdn:Tmden_1456 hypothetical protein; outer membrane porin complement(4382030..4383283) Shewanella frigidimarina NCIMB 400 4280585 YP_752359.1 CDS Sfri_3693 NC_008345.1 4383349 4383705 R KEGG: ade:Adeh_2097 hypothetical protein; hypothetical protein complement(4383349..4383705) Shewanella frigidimarina NCIMB 400 4280586 YP_752360.1 CDS Sfri_3694 NC_008345.1 4383773 4385452 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: dsy:DSY3663 putative fumarate reductase flavoprotein subunit; twin-arginine translocation pathway signal complement(4383773..4385452) Shewanella frigidimarina NCIMB 400 4280587 YP_752361.1 CDS Sfri_3695 NC_008345.1 4385928 4386653 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: gsu:GSU3396 transcriptional regulator, GntR family; regulatory protein GntR 4385928..4386653 Shewanella frigidimarina NCIMB 400 4280588 YP_752362.1 CDS Sfri_3696 NC_008345.1 4387002 4388732 D PFAM: Tannase and feruloyl esterase; KEGG: reu:Reut_B4873 feruloyl esterase; feruloyl esterase 4387002..4388732 Shewanella frigidimarina NCIMB 400 4280589 YP_752363.1 CDS Sfri_3697 NC_008345.1 4388929 4389687 R KEGG: noc:Noc_2228 hypothetical protein; hypothetical protein complement(4388929..4389687) Shewanella frigidimarina NCIMB 400 4280590 YP_752364.1 CDS Sfri_3698 NC_008345.1 4389816 4391396 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(4389816..4391396) Shewanella frigidimarina NCIMB 400 4280591 YP_752365.1 CDS Sfri_3699 NC_008345.1 4391583 4392764 D PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ppu:PP0808 flavohemoprotein; globin 4391583..4392764 Shewanella frigidimarina NCIMB 400 4280592 YP_752366.1 CDS Sfri_3700 NC_008345.1 4392898 4394055 R PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: noc:Noc_0207 protein phosphatase 2C-like, stage II sporulation E; serine phosphatase complement(4392898..4394055) Shewanella frigidimarina NCIMB 400 4280593 YP_752367.1 CDS Sfri_3701 NC_008345.1 4394065 4394640 R PFAM: toluene tolerance family protein; KEGG: gme:Gmet_0784 toluene tolerance; toluene tolerance family protein complement(4394065..4394640) Shewanella frigidimarina NCIMB 400 4280594 YP_752368.1 CDS Sfri_3702 NC_008345.1 4394640 4395089 R PFAM: Mammalian cell entry related domain protein; KEGG: pca:Pcar_0449 putative ABC transport system substrate-binding protein; hypothetical protein complement(4394640..4395089) Shewanella frigidimarina NCIMB 400 4280595 YP_752369.1 CDS Sfri_3703 NC_008345.1 4395102 4395896 R PFAM: protein of unknown function DUF140; KEGG: pca:Pcar_0447 putative ABC transport system permease protein; hypothetical protein complement(4395102..4395896) Shewanella frigidimarina NCIMB 400 4280596 YP_752370.1 CDS Sfri_3704 NC_008345.1 4395896 4396693 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb0331 ABC-type transport system; ABC transporter complement(4395896..4396693) Shewanella frigidimarina NCIMB 400 4280597 YP_752371.1 CDS Sfri_3705 NC_008345.1 4396686 4397015 R TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mag:amb0333 anti-anti-sigma regulatory factor; anti-sigma-factor antagonist complement(4396686..4397015) Shewanella frigidimarina NCIMB 400 4280598 YP_752372.1 CDS Sfri_3706 NC_008345.1 4397022 4397423 R KEGG: mag:amb0334 serine phosphatase RsbU; putative anti-sigma regulatory factor complement(4397022..4397423) Shewanella frigidimarina NCIMB 400 4280599 YP_752373.1 CDS Sfri_3707 NC_008345.1 4397427 4398092 R PFAM: VacJ family lipoprotein; KEGG: ilo:IL1097 surface lipoprotein; VacJ family lipoprotein complement(4397427..4398092) Shewanella frigidimarina NCIMB 400 4280600 YP_752374.1 CDS Sfri_3708 NC_008345.1 4398499 4398717 R KEGG: hch:HCH_02263 hypothetical protein; hypothetical protein complement(4398499..4398717) Shewanella frigidimarina NCIMB 400 4280601 YP_752375.1 CDS Sfri_3709 NC_008345.1 4399048 4399794 D PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: son:SO1652 putative histidinol phosphatase; putative hydrolase 4399048..4399794 Shewanella frigidimarina NCIMB 400 4280602 YP_752376.1 CDS Sfri_3710 NC_008345.1 4399965 4400693 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: son:SO4028 single-strand binding protein; single-strand binding protein complement(4399965..4400693) Shewanella frigidimarina NCIMB 400 4280603 YP_752377.1 CDS Sfri_3711 NC_008345.1 4400759 4402126 R PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4029 transporter, putative; major facilitator transporter complement(4400759..4402126) Shewanella frigidimarina NCIMB 400 4280604 YP_752378.1 CDS Sfri_3712 NC_008345.1 4402371 4405232 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: son:SO4030 excinuclease ABC, A subunit; excinuclease ABC subunit A 4402371..4405232 Shewanella frigidimarina NCIMB 400 4280605 YP_752379.1 CDS Sfri_3713 NC_008345.1 4405283 4406254 D PFAM: peptidase M28; KEGG: son:SO4032 hypothetical protein; peptidase M28 4405283..4406254 Shewanella frigidimarina NCIMB 400 4280606 YP_752380.1 CDS Sfri_3714 NC_008345.1 4406509 4408413 D PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO4034 ATP-dependent RNA helicase DeaD; DEAD/DEAH box helicase 4406509..4408413 Shewanella frigidimarina NCIMB 400 4280607 YP_752381.1 CDS Sfri_3715 NC_008345.1 4408850 4409818 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4040 integral membrane domain protein; hypothetical protein complement(4408850..4409818) Shewanella frigidimarina NCIMB 400 4280608 YP_752382.1 CDS Sfri_3716 NC_008345.1 4410026 4411129 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 4410026..4411129 Shewanella frigidimarina NCIMB 400 4280609 YP_752383.1 CDS Sfri_3717 NC_008345.1 4411467 4413647 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_2724 FhuE receptor; TonB-dependent siderophore receptor 4411467..4413647 Shewanella frigidimarina NCIMB 400 4280610 YP_752384.1 CDS Sfri_3718 NC_008345.1 4413770 4416382 R PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; Endonuclease/exonuclease/phosphatase; KEGG: son:SO1066 extracellular nuclease; endonuclease/exonuclease/phosphatase complement(4413770..4416382) Shewanella frigidimarina NCIMB 400 4280611 YP_752385.1 CDS Sfri_3719 NC_008345.1 4416962 4418401 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vvy:VVA0728 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4416962..4418401 Shewanella frigidimarina NCIMB 400 4280612 YP_752386.1 CDS Sfri_3720 NC_008345.1 4418534 4419901 R KEGG: son:SO4018 hypothetical protein; hypothetical protein complement(4418534..4419901) Shewanella frigidimarina NCIMB 400 4280613 YP_752387.1 CDS Sfri_3721 NC_008345.1 4420099 4421478 R PFAM: peptidase U62, modulator of DNA gyrase; KEGG: son:SO4078 PmbA protein; C69 family peptidase complement(4420099..4421478) Shewanella frigidimarina NCIMB 400 4280614 YP_752388.1 CDS Sfri_3722 NC_008345.1 4421638 4422171 D PFAM: protein of unknown function DUF615; KEGG: son:SO4079 hypothetical protein; hypothetical protein 4421638..4422171 Shewanella frigidimarina NCIMB 400 4280615 YP_752389.1 CDS Sfri_3723 NC_008345.1 4422219 4424699 D PFAM: Ig domain protein, group 1 domain protein; KEGG: son:SO4080 hypothetical protein; Ig domain-containing protein 4422219..4424699 Shewanella frigidimarina NCIMB 400 4280616 YP_752390.1 CDS Sfri_3724 NC_008345.1 4425008 4425409 D hypothetical protein 4425008..4425409 Shewanella frigidimarina NCIMB 400 4280617 YP_752391.1 CDS Sfri_3725 NC_008345.1 4425746 4426636 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_4160 substrate-binding transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 4425746..4426636 Shewanella frigidimarina NCIMB 400 4280618 YP_752392.1 CDS Sfri_3726 NC_008345.1 4427032 4427544 D KEGG: cps:CPS_4161 hypothetical protein; hypothetical protein 4427032..4427544 Shewanella frigidimarina NCIMB 400 4280619 YP_752393.1 CDS Sfri_3727 NC_008345.1 4427727 4428872 R KEGG: son:SO4087 conserved hypothetical protein; hypothetical protein complement(4427727..4428872) Shewanella frigidimarina NCIMB 400 4280620 YP_752394.1 CDS Sfri_3728 NC_008345.1 4428869 4430041 R KEGG: son:SO4088 conserved hypothetical protein; hypothetical protein complement(4428869..4430041) Shewanella frigidimarina NCIMB 400 4280621 YP_752395.1 CDS Sfri_3729 NC_008345.1 4430054 4431043 R PFAM: secretion protein HlyD family protein; KEGG: son:SO4089 HlyD family secretion protein; secretion protein HlyD family protein complement(4430054..4431043) Shewanella frigidimarina NCIMB 400 4280622 YP_752396.1 CDS Sfri_3730 NC_008345.1 4431033 4432466 R PFAM: outer membrane efflux protein; KEGG: son:SO4090 outer membrane efflux protein; outer membrane efflux protein complement(4431033..4432466) Shewanella frigidimarina NCIMB 400 4280623 YP_752397.1 CDS Sfri_3731 NC_008345.1 4432650 4434098 R PFAM: peptidase U62, modulator of DNA gyrase; KEGG: son:SO4091 TldD protein; C69 family peptidase complement(4432650..4434098) Shewanella frigidimarina NCIMB 400 4280624 YP_752398.1 CDS Sfri_3732 NC_008345.1 4434194 4435024 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: son:SO4092 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(4434194..4435024) Shewanella frigidimarina NCIMB 400 4280625 YP_752399.1 CDS Sfri_3733 NC_008345.1 4434948 4439279 R TIGRFAM: conserved hypothetical protein; KEGG: son:SO4093 hypothetical protein; hypothetical protein complement(4434948..4439279) Shewanella frigidimarina NCIMB 400 4280626 YP_752400.1 CDS Sfri_3734 NC_008345.1 4439279 4440769 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(4439279..4440769) Shewanella frigidimarina NCIMB 400 4280627 YP_752401.1 CDS Sfri_3735 NC_008345.1 4440851 4441438 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO4095 maf protein; maf protein complement(4440851..4441438) Shewanella frigidimarina NCIMB 400 4280628 YP_752402.1 CDS Sfri_3736 NC_008345.1 4441496 4441987 R PFAM: Rod shape-determining protein MreD; KEGG: son:SO4096 rod shape-determining protein MreD; rod shape-determining protein MreD complement(4441496..4441987) Shewanella frigidimarina NCIMB 400 4280629 YP_752403.1 CDS Sfri_3737 NC_008345.1 4441984 4442946 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(4441984..4442946) Shewanella frigidimarina NCIMB 400 4280630 YP_752404.1 CDS Sfri_3738 NC_008345.1 4443010 4444059 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(4443010..4444059) Shewanella frigidimarina NCIMB 400 4280631 YP_752405.1 CDS Sfri_3739 NC_008345.1 4444252 4448850 R KEGG: son:SO4100 MSHA biogenesis protein MshQ; hypothetical protein complement(4444252..4448850) Shewanella frigidimarina NCIMB 400 4280632 YP_752406.1 CDS Sfri_3740 NC_008345.1 4448840 4449295 R KEGG: son:SO4101 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP complement(4448840..4449295) Shewanella frigidimarina NCIMB 400 4280633 YP_752407.1 CDS Sfri_3741 NC_008345.1 4449285 4450112 R PFAM: methylation site containing protein; KEGG: son:SO4102 MSHA biogenesis protein MshO; methylation site containing protein complement(4449285..4450112) Shewanella frigidimarina NCIMB 400 4280634 YP_752408.1 CDS Sfri_3742 NC_008345.1 4450112 4450648 R PFAM: methylation site containing protein; KEGG: son:SO4103 MSHA pilin protein MshD; methylation site containing protein complement(4450112..4450648) Shewanella frigidimarina NCIMB 400 4280635 YP_752409.1 CDS Sfri_3743 NC_008345.1 4450638 4451117 R PFAM: methylation site containing protein; KEGG: son:SO4104 MSHA pilin protein MshC; methylation site containing protein complement(4450638..4451117) Shewanella frigidimarina NCIMB 400 4280636 YP_752410.1 CDS Sfri_3744 NC_008345.1 4451358 4451879 R PFAM: methylation site containing protein; KEGG: son:SO4105 MSHA pilin protein MshA; methylation site containing protein complement(4451358..4451879) Shewanella frigidimarina NCIMB 400 4280637 YP_752411.1 CDS Sfri_3745 NC_008345.1 4451945 4452550 R PFAM: methylation site containing protein; KEGG: son:SO4106 MSHA pilin protein MshB; methylation site containing protein complement(4451945..4452550) Shewanella frigidimarina NCIMB 400 4280638 YP_752412.1 CDS Sfri_3746 NC_008345.1 4452660 4453238 R KEGG: son:SO4107 hypothetical protein; hypothetical protein complement(4452660..4453238) Shewanella frigidimarina NCIMB 400 4280639 YP_752413.1 CDS Sfri_3747 NC_008345.1 4453283 4454497 R PFAM: type II secretion system protein; KEGG: son:SO4108 MSHA biogenesis protein MshG; type II secretion system protein complement(4453283..4454497) Shewanella frigidimarina NCIMB 400 4280640 YP_752414.1 CDS Sfri_3748 NC_008345.1 4454500 4456260 R PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO4109 MSHA biogenesis protein MshE; type II secretion system protein E complement(4454500..4456260) Shewanella frigidimarina NCIMB 400 4280641 YP_752415.1 CDS Sfri_3749 NC_008345.1 4456257 4457534 R PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO4110 MSHA biogenesis protein MshN, putative; hypothetical protein complement(4456257..4457534) Shewanella frigidimarina NCIMB 400 4280642 YP_752416.1 CDS Sfri_3750 NC_008345.1 4457549 4458493 R KEGG: son:SO4111 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM complement(4457549..4458493) Shewanella frigidimarina NCIMB 400 4280643 YP_752417.1 CDS Sfri_3751 NC_008345.1 4458563 4460233 R TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB, short N-terminal domain protein; KEGG: son:SO4112 MSHA biogenesis protein MshL; pilus (MSHA type) biogenesis protein MshL complement(4458563..4460233) Shewanella frigidimarina NCIMB 400 4280644 YP_752418.1 CDS Sfri_3752 NC_008345.1 4460247 4460573 R KEGG: son:SO4113 MSHA biogenesis protein MshK; MSHA biogenesis protein MshK complement(4460247..4460573) Shewanella frigidimarina NCIMB 400 4280645 YP_752419.1 CDS Sfri_3753 NC_008345.1 4460554 4461210 R KEGG: son:SO4114 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ complement(4460554..4461210) Shewanella frigidimarina NCIMB 400 4280646 YP_752420.1 CDS Sfri_3754 NC_008345.1 4461207 4461755 R KEGG: vch:VC0399 MSHA biogenesis protein MshI; hypothetical protein complement(4461207..4461755) Shewanella frigidimarina NCIMB 400 4280647 YP_752421.1 CDS Sfri_3755 NC_008345.1 4461824 4462729 R KEGG: son:SO4114.2 hypothetical biogenesis protein MshI; biogenesis protein MshI complement(4461824..4462729) Shewanella frigidimarina NCIMB 400 4280648 YP_752422.1 CDS Sfri_3756 NC_008345.1 4462992 4464902 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD complement(4462992..4464902) Shewanella frigidimarina NCIMB 400 4280649 YP_752423.1 CDS Sfri_3757 NC_008345.1 4465106 4466353 R PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: son:SO4118 malate oxidoreductase, putative; malate dehydrogenase complement(4465106..4466353) Shewanella frigidimarina NCIMB 400 4280650 YP_752424.1 CDS rpmE NC_008345.1 4466787 4466999 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(4466787..4466999) Shewanella frigidimarina NCIMB 400 4280651 YP_752425.1 CDS Sfri_3759 NC_008345.1 4467142 4468377 R KEGG: son:SO4121 hypothetical protein; hypothetical protein complement(4467142..4468377) Shewanella frigidimarina NCIMB 400 4280652 YP_752426.1 CDS Sfri_3760 NC_008345.1 4468667 4469503 R KEGG: son:SO4121 hypothetical protein; hypothetical protein complement(4468667..4469503) Shewanella frigidimarina NCIMB 400 4280653 YP_752427.1 CDS Sfri_3761 NC_008345.1 4469588 4471783 D TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO4122 primosomal protein N'; primosomal protein N' 4469588..4471783 Shewanella frigidimarina NCIMB 400 4280654 YP_752428.1 CDS argS NC_008345.1 4471963 4473708 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 4471963..4473708 Shewanella frigidimarina NCIMB 400 4280655 YP_752429.1 CDS Sfri_3763 NC_008345.1 4473711 4474310 D PFAM: Sporulation domain protein; KEGG: son:SO4124 cell division protein FtsN, putative; sporulation domain-containing protein 4473711..4474310 Shewanella frigidimarina NCIMB 400 4280656 YP_752430.1 CDS Sfri_3764 NC_008345.1 4474481 4475005 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4474481..4475005 Shewanella frigidimarina NCIMB 400 4280657 YP_752431.1 CDS hslU NC_008345.1 4475031 4476356 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4475031..4476356 Shewanella frigidimarina NCIMB 400 4280658 YP_752432.1 CDS Sfri_3766 NC_008345.1 4476532 4476918 D PFAM: protein of unknown function DUF971; KEGG: son:SO4164 hypothetical protein; hypothetical protein 4476532..4476918 Shewanella frigidimarina NCIMB 400 4280659 YP_752433.1 CDS Sfri_3767 NC_008345.1 4476962 4477267 D hypothetical protein 4476962..4477267 Shewanella frigidimarina NCIMB 400 4280660 YP_752434.1 CDS Sfri_3768 NC_008345.1 4477529 4477816 R hypothetical protein complement(4477529..4477816) Shewanella frigidimarina NCIMB 400 4280661 YP_752435.1 CDS Sfri_3769 NC_008345.1 4478111 4478890 D hypothetical protein 4478111..4478890 Shewanella frigidimarina NCIMB 400 4280662 YP_752436.1 CDS Sfri_3770 NC_008345.1 4479098 4480141 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: son:SO4548 transposase, IS110 family; transposase IS116/IS110/IS902 family protein 4479098..4480141 Shewanella frigidimarina NCIMB 400 4280663 YP_752437.1 CDS Sfri_3771 NC_008345.1 4480959 4483556 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(4480959..4483556) Shewanella frigidimarina NCIMB 400 4280664 YP_752438.1 CDS Sfri_3772 NC_008345.1 4483962 4484618 D YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 4483962..4484618 Shewanella frigidimarina NCIMB 400 4280665 YP_752439.1 CDS Sfri_3773 NC_008345.1 4484950 4487214 R PFAM: Patatin; KEGG: son:SO0428 hypothetical protein; patatin complement(4484950..4487214) Shewanella frigidimarina NCIMB 400 4280666 YP_752440.1 CDS Sfri_3774 NC_008345.1 4487323 4491786 R KEGG: son:SO0427 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) complement(4487323..4491786) Shewanella frigidimarina NCIMB 400 4280667 YP_752441.1 CDS Sfri_3775 NC_008345.1 4492187 4493617 R E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(4492187..4493617) Shewanella frigidimarina NCIMB 400 4280668 YP_752442.1 CDS Sfri_3776 NC_008345.1 4493817 4495814 R KEGG: son:SO0425 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase complement(4493817..4495814) Shewanella frigidimarina NCIMB 400 4280669 YP_752443.1 CDS aceE NC_008345.1 4495826 4498492 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(4495826..4498492) Shewanella frigidimarina NCIMB 400 4280670 YP_752444.1 CDS pdhR NC_008345.1 4498584 4499336 R activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR complement(4498584..4499336) Shewanella frigidimarina NCIMB 400 4280671 YP_752445.1 CDS Sfri_3779 NC_008345.1 4499635 4500486 R involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE complement(4499635..4500486) Shewanella frigidimarina NCIMB 400 4280672 YP_752446.1 CDS Sfri_3780 NC_008345.1 4500612 4501166 R PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: son:SO0421 AmpD protein; N-acetyl-anhydromuranmyl-L-alanine amidase complement(4500612..4501166) Shewanella frigidimarina NCIMB 400 4280673 YP_752447.1 CDS Sfri_3781 NC_008345.1 4501586 4502464 D KEGG: ppr:PBPRA3199 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 4501586..4502464 Shewanella frigidimarina NCIMB 400 4280674 YP_752448.1 CDS Sfri_3782 NC_008345.1 4503464 4503910 D PFAM: Fimbrial protein pilin; methylation site containing protein; KEGG: xcb:XC_1058 pilin; methylation site containing protein 4503464..4503910 Shewanella frigidimarina NCIMB 400 4280675 YP_752449.1 CDS Sfri_3783 NC_008345.1 4504003 4505709 D TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO0416 type IV pilus biogenesis protein PilB; type IV-A pilus assembly ATPase PilB 4504003..4505709 Shewanella frigidimarina NCIMB 400 4280676 YP_752450.1 CDS Sfri_3784 NC_008345.1 4505817 4507076 D PFAM: type II secretion system protein; KEGG: son:SO0415 type IV pilus biogenesis protein PilC; type II secretion system protein 4505817..4507076 Shewanella frigidimarina NCIMB 400 4280677 YP_752451.1 CDS Sfri_3785 NC_008345.1 4507106 4508032 D PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: son:SO0414 leader peptidase (prepilin peptidase) / N-methyltransferase; prepilin peptidase 4507106..4508032 Shewanella frigidimarina NCIMB 400 4280678 YP_752452.1 CDS coaE NC_008345.1 4508029 4508658 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 4508029..4508658 Shewanella frigidimarina NCIMB 400 4280679 YP_752453.1 CDS Sfri_3787 NC_008345.1 4508651 4509385 D PFAM: protein of unknown function DUF1342; KEGG: son:SO0412 hypothetical protein; hypothetical protein 4508651..4509385 Shewanella frigidimarina NCIMB 400 4280680 YP_752454.1 CDS Sfri_3788 NC_008345.1 4509422 4509640 D PFAM: protein of unknown function DUF329; KEGG: son:SO0411 hypothetical protein; hypothetical protein 4509422..4509640 Shewanella frigidimarina NCIMB 400 4280681 YP_752455.1 CDS Sfri_3789 NC_008345.1 4509664 4510059 D TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: son:SO0410 mutator mutT protein; mutator MutT protein 4509664..4510059 Shewanella frigidimarina NCIMB 400 4280682 YP_752456.1 CDS Sfri_3792 NC_008345.1 4510983 4511516 R KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB complement(4510983..4511516) Shewanella frigidimarina NCIMB 400 4280683 YP_752457.1 CDS Sfri_3793 NC_008345.1 4511530 4512009 R KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA complement(4511530..4512009) Shewanella frigidimarina NCIMB 400 4280684 YP_752458.1 CDS Sfri_3794 NC_008345.1 4518767 4519303 R KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB complement(4518767..4519303) Shewanella frigidimarina NCIMB 400 4280685 YP_752459.1 CDS Sfri_3795 NC_008345.1 4519317 4519796 R KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA complement(4519317..4519796) Shewanella frigidimarina NCIMB 400 4280686 YP_752460.1 CDS Sfri_3796 NC_008345.1 4526231 4528951 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(4526231..4528951) Shewanella frigidimarina NCIMB 400 4280687 YP_752461.1 CDS Sfri_3797 NC_008345.1 4529010 4529909 R PFAM: peptidase M23B; KEGG: son:SO4212 peptidase, M23/M37 family; peptidase M23B complement(4529010..4529909) Shewanella frigidimarina NCIMB 400 4280688 YP_752462.1 CDS Sfri_3798 NC_008345.1 4529937 4530389 D KEGG: son:SO4213 hypothetical protein; hypothetical protein 4529937..4530389 Shewanella frigidimarina NCIMB 400 4280689 YP_752463.1 CDS lpxC NC_008345.1 4530394 4531314 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(4530394..4531314) Shewanella frigidimarina NCIMB 400 4280690 YP_752464.1 CDS Sfri_3800 NC_008345.1 4531525 4532691 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(4531525..4532691) Shewanella frigidimarina NCIMB 400 4280691 YP_752465.1 CDS Sfri_3801 NC_008345.1 4532718 4533953 R PFAM: cell division protein FtsA; KEGG: son:SO4216 cell division protein FtsA; cell division protein FtsA complement(4532718..4533953) Shewanella frigidimarina NCIMB 400 4280692 YP_752466.1 CDS Sfri_3802 NC_008345.1 4533950 4534720 R PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: son:SO4217 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein complement(4533950..4534720) Shewanella frigidimarina NCIMB 400 4280693 YP_752467.1 CDS murC NC_008345.1 4534842 4536299 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(4534842..4536299) Shewanella frigidimarina NCIMB 400 4280694 YP_752468.1 CDS murG NC_008345.1 4536301 4537404 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(4536301..4537404) Shewanella frigidimarina NCIMB 400 4280695 YP_752469.1 CDS Sfri_3805 NC_008345.1 4537404 4538618 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: son:SO4220 cell division protein FtsW; cell division protein FtsW complement(4537404..4538618) Shewanella frigidimarina NCIMB 400 4280696 YP_752470.1 CDS murD NC_008345.1 4538608 4539930 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(4538608..4539930) Shewanella frigidimarina NCIMB 400 4280697 YP_752471.1 CDS mraY NC_008345.1 4539953 4541035 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(4539953..4541035) Shewanella frigidimarina NCIMB 400 4280698 YP_752472.1 CDS Sfri_3808 NC_008345.1 4541036 4542424 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO4223 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase complement(4541036..4542424) Shewanella frigidimarina NCIMB 400 4280699 YP_752473.1 CDS murE NC_008345.1 4542421 4543911 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(4542421..4543911) Shewanella frigidimarina NCIMB 400 4280700 YP_752474.1 CDS Sfri_3810 NC_008345.1 4543898 4545646 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: son:SO4225 peptidoglycan synthetase FtsI; peptidoglycan glycosyltransferase complement(4543898..4545646) Shewanella frigidimarina NCIMB 400 4280701 YP_752475.1 CDS Sfri_3811 NC_008345.1 4545658 4545972 R PFAM: cell division protein FtsL; KEGG: son:SO4226 cell division protein FtsL; cell division protein FtsL complement(4545658..4545972) Shewanella frigidimarina NCIMB 400 4280702 YP_752476.1 CDS mraW NC_008345.1 4545987 4546928 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: son:SO4227 putative S-adenosyl methionine adenyltransferase; S-adenosyl-methyltransferase MraW complement(4545987..4546928) Shewanella frigidimarina NCIMB 400 4280703 YP_752477.1 CDS Sfri_3813 NC_008345.1 4546954 4547412 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(4546954..4547412) Shewanella frigidimarina NCIMB 400 4280704 YP_752478.1 CDS Sfri_3814 NC_008345.1 4548550 4548870 D KEGG: son:SO4229 hypothetical protein; hypothetical protein 4548550..4548870 Shewanella frigidimarina NCIMB 400 4280705 YP_752479.1 CDS Sfri_3815 NC_008345.1 4548883 4550379 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: son:SO4230 glycerol kinase; glycerol kinase complement(4548883..4550379) Shewanella frigidimarina NCIMB 400 4280706 YP_752480.1 CDS Sfri_3816 NC_008345.1 4550575 4551927 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO4232 long-chain fatty acid transport protein; aromatic hydrocarbon degradation membrane protein complement(4550575..4551927) Shewanella frigidimarina NCIMB 400 4280707 YP_752481.1 CDS leuD NC_008345.1 4552406 4553011 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(4552406..4553011) Shewanella frigidimarina NCIMB 400 4280708 YP_752482.1 CDS Sfri_3818 NC_008345.1 4553031 4554443 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(4553031..4554443) Shewanella frigidimarina NCIMB 400 4280709 YP_752483.1 CDS Sfri_3819 NC_008345.1 4554443 4555537 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(4554443..4555537) Shewanella frigidimarina NCIMB 400 4280710 YP_752484.1 CDS Sfri_3820 NC_008345.1 4555534 4557102 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(4555534..4557102) Shewanella frigidimarina NCIMB 400 4280711 YP_752485.1 CDS Sfri_3821 NC_008345.1 4557707 4559470 D KEGG: son:SO4240 hypothetical protein; hypothetical protein 4557707..4559470 Shewanella frigidimarina NCIMB 400 4280712 YP_752486.1 CDS Sfri_3822 NC_008345.1 4559475 4561322 R TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO4241 ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase RecQ complement(4559475..4561322) Shewanella frigidimarina NCIMB 400 4280713 YP_752487.1 CDS Sfri_3823 NC_008345.1 4561524 4561988 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO4242 hypothetical protein; hypothetical protein 4561524..4561988 Shewanella frigidimarina NCIMB 400 4280714 YP_752488.1 CDS Sfri_3824 NC_008345.1 4562113 4563021 D TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4243 rarD protein; transporter DMT superfamily protein 4562113..4563021 Shewanella frigidimarina NCIMB 400 4280715 YP_752489.1 CDS Sfri_3825 NC_008345.1 4563137 4564456 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(4563137..4564456) Shewanella frigidimarina NCIMB 400 4280716 YP_752490.1 CDS rpmG NC_008345.1 4564933 4565106 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(4564933..4565106) Shewanella frigidimarina NCIMB 400 4280717 YP_752491.1 CDS rpmB NC_008345.1 4565113 4565349 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(4565113..4565349) Shewanella frigidimarina NCIMB 400 4280718 YP_752492.1 CDS radC NC_008345.1 4565471 4566148 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(4565471..4566148) Shewanella frigidimarina NCIMB 400 4280719 YP_752493.1 CDS Sfri_3829 NC_008345.1 4566645 4567847 D KEGG: son:SO4249 DNA/pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 4566645..4567847 Shewanella frigidimarina NCIMB 400 4280720 YP_752494.1 CDS dut NC_008345.1 4567844 4568302 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 4567844..4568302 Shewanella frigidimarina NCIMB 400 4280721 YP_752495.1 CDS slmA NC_008345.1 4568338 4568931 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 4568338..4568931 Shewanella frigidimarina NCIMB 400 4280722 YP_752496.1 CDS Sfri_3832 NC_008345.1 4569073 4571052 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: son:SO4252 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase 4569073..4571052 Shewanella frigidimarina NCIMB 400 4280723 YP_752497.1 CDS Sfri_3833 NC_008345.1 4571310 4573259 D PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO4252 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase 4571310..4573259 Shewanella frigidimarina NCIMB 400 4280724 YP_752498.1 CDS folE NC_008345.1 4573438 4574088 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 4573438..4574088 Shewanella frigidimarina NCIMB 400 4280725 YP_752499.1 CDS pyrE NC_008345.1 4574174 4574815 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(4574174..4574815) Shewanella frigidimarina NCIMB 400 4280726 YP_752500.1 CDS rph NC_008345.1 4574888 4575601 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(4574888..4575601) Shewanella frigidimarina NCIMB 400 4280727 YP_752501.1 CDS Sfri_3837 NC_008345.1 4575779 4576642 D TIGRFAM: conserved hypothetical protein; PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: son:SO4257 conserved hypothetical protein TIGR00255; hypothetical protein 4575779..4576642 Shewanella frigidimarina NCIMB 400 4280728 YP_752502.1 CDS Sfri_3838 NC_008345.1 4577027 4578313 D KEGG: nfa:nfa34960 hypothetical protein; hypothetical protein 4577027..4578313 Shewanella frigidimarina NCIMB 400 4280729 YP_752503.1 CDS Sfri_3839 NC_008345.1 4578345 4580357 D PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: nfa:nfa34950 hypothetical protein; peptidase S15 4578345..4580357 Shewanella frigidimarina NCIMB 400 4280730 YP_752504.1 CDS Sfri_3840 NC_008345.1 4580743 4581951 D PFAM: protein of unknown function DUF1006; KEGG: son:SO4332 hypothetical protein; hypothetical protein 4580743..4581951 Shewanella frigidimarina NCIMB 400 4280731 YP_752505.1 CDS Sfri_3841 NC_008345.1 4582173 4583489 D functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 4582173..4583489 Shewanella frigidimarina NCIMB 400 4280732 YP_752506.1 CDS Sfri_3842 NC_008345.1 4584098 4587283 R PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO0368 helicase; type III restriction enzyme, res subunit complement(4584098..4587283) Shewanella frigidimarina NCIMB 400 4280733 YP_752507.1 CDS Sfri_3843 NC_008345.1 4587369 4588475 R PFAM: filamentation induced by cAMP protein Fic; KEGG: son:SO0367 hypothetical protein; filamentation induced by cAMP protein fic complement(4587369..4588475) Shewanella frigidimarina NCIMB 400 4280734 YP_752508.1 CDS Sfri_3844 NC_008345.1 4588709 4589491 D KEGG: son:SO0366 hypothetical protein; hypothetical protein 4588709..4589491 Shewanella frigidimarina NCIMB 400 4280735 YP_752509.1 CDS Sfri_3845 NC_008345.1 4589571 4591001 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0365 hypothetical permeases of the major facilitator superfamily; twin-arginine translocation pathway signal complement(4589571..4591001) Shewanella frigidimarina NCIMB 400 4280736 YP_752510.1 CDS Sfri_3846 NC_008345.1 4591050 4591316 R hypothetical protein complement(4591050..4591316) Shewanella frigidimarina NCIMB 400 4280737 YP_752511.1 CDS Sfri_3847 NC_008345.1 4591486 4593678 R necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH complement(4591486..4593678) Shewanella frigidimarina NCIMB 400 4280738 YP_752512.1 CDS mdoG NC_008345.1 4593681 4595360 R involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G complement(4593681..4595360) Shewanella frigidimarina NCIMB 400 4280739 YP_752513.1 CDS Sfri_3849 NC_008345.1 4595914 4596885 D PFAM: alpha/beta hydrolase fold; KEGG: vvy:VV1990 lactonizing lipase; alpha/beta hydrolase fold 4595914..4596885 Shewanella frigidimarina NCIMB 400 4280740 YP_752514.1 CDS Sfri_3850 NC_008345.1 4596891 4597889 D KEGG: aci:ACIAD3308 lipase chaperone; lipase chaperone-like protein 4596891..4597889 Shewanella frigidimarina NCIMB 400 4280741 YP_752515.1 CDS Sfri_3851 NC_008345.1 4598671 4600806 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: vpa:VPA1656 ferric vibrioferrin receptor; TonB-dependent siderophore receptor 4598671..4600806 Shewanella frigidimarina NCIMB 400 4280742 YP_752516.1 CDS Sfri_3852 NC_008345.1 4601031 4602434 R PFAM: chemotaxis sensory transducer; KEGG: ppr:PBPRB1866 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(4601031..4602434) Shewanella frigidimarina NCIMB 400 4280743 YP_752517.1 CDS Sfri_3853 NC_008345.1 4602762 4603550 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: pha:PSHAa2408 transcriptional regulator (AraC/XylS); AraC family transcriptional regulator complement(4602762..4603550) Shewanella frigidimarina NCIMB 400 4280744 YP_752518.1 CDS Sfri_3854 NC_008345.1 4603654 4604862 D PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa2409 permease; major facilitator transporter 4603654..4604862 Shewanella frigidimarina NCIMB 400 4280745 YP_752519.1 CDS Sfri_3855 NC_008345.1 4605045 4605593 R PFAM: HPP family protein; KEGG: tdn:Tmden_1127 HPP; HPP family protein complement(4605045..4605593) Shewanella frigidimarina NCIMB 400 4280746 YP_752520.1 CDS Sfri_3856 NC_008345.1 4605757 4606665 R KEGG: pha:PSHAb0203 putative SmvA (YddG) efflux protein; hypothetical protein complement(4605757..4606665) Shewanella frigidimarina NCIMB 400 4280747 YP_752521.1 CDS Sfri_3857 NC_008345.1 4606677 4607504 R PFAM: protein of unknown function DUF548; KEGG: son:SO4658 hypothetical protein; hypothetical protein complement(4606677..4607504) Shewanella frigidimarina NCIMB 400 4280748 YP_752522.1 CDS Sfri_3858 NC_008345.1 4607572 4608429 D PFAM: protein of unknown function DUF519; KEGG: son:SO4659 hypothetical protein; hypothetical protein 4607572..4608429 Shewanella frigidimarina NCIMB 400 4280749 YP_752523.1 CDS Sfri_3859 NC_008345.1 4608785 4610221 R PFAM: peptidase M20; peptidase M28; KEGG: ilo:IL1071 probable aminopeptidase fused to fibronectin type 3 domain; peptidase M28 complement(4608785..4610221) Shewanella frigidimarina NCIMB 400 4280750 YP_752524.1 CDS Sfri_3860 NC_008345.1 4610238 4611227 R PFAM: Lytic transglycosylase, catalytic; KEGG: son:SO4660 transglycosylase SLT domain protein; lytic transglycosylase, catalytic complement(4610238..4611227) Shewanella frigidimarina NCIMB 400 4280751 YP_752525.1 CDS Sfri_3861 NC_008345.1 4611232 4611771 R KEGG: son:SO4662 lemA protein; hypothetical protein complement(4611232..4611771) Shewanella frigidimarina NCIMB 400 4280752 YP_752526.1 CDS Sfri_3862 NC_008345.1 4612190 4615345 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO4692 AcrB/AcrD/AcrF family protein; transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(4612190..4615345) Shewanella frigidimarina NCIMB 400 4280753 YP_752527.1 CDS Sfri_3863 NC_008345.1 4615355 4616503 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO4693 multidrug resistance protein, AcrA/AcrE family; RND family efflux transporter MFP subunit complement(4615355..4616503) Shewanella frigidimarina NCIMB 400 4280754 YP_752528.1 CDS Sfri_3864 NC_008345.1 4616831 4617940 R KEGG: vfi:VFA0087 outer membrane protein RomA; outer membrane protein RomA complement(4616831..4617940) Shewanella frigidimarina NCIMB 400 4280755 YP_752529.1 CDS Sfri_3865 NC_008345.1 4618037 4618654 D PFAM: regulatory protein, TetR; KEGG: vvy:VVA1153 transcriptional regulator; transcriptional regulator, TetR family protein 4618037..4618654 Shewanella frigidimarina NCIMB 400 4280756 YP_752530.1 CDS Sfri_3866 NC_008345.1 4618672 4619358 R KEGG: son:SO4696 hypothetical 3-methyladenine DNA glycosylase; 3-methyladenine DNA glycosylase complement(4618672..4619358) Shewanella frigidimarina NCIMB 400 4280757 YP_752531.1 CDS Sfri_3867 NC_008345.1 4619456 4619986 R KEGG: son:SO4698 hypothetical protein; hypothetical protein complement(4619456..4619986) Shewanella frigidimarina NCIMB 400 4280758 YP_752532.1 CDS ribB NC_008345.1 4620527 4621183 D DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 4620527..4621183 Shewanella frigidimarina NCIMB 400 4280759 YP_752533.1 CDS Sfri_3869 NC_008345.1 4621838 4622701 R KEGG: sru:SRU_1646 hypothetical protein; hypothetical protein complement(4621838..4622701) Shewanella frigidimarina NCIMB 400 4280760 YP_752534.1 CDS Sfri_3870 NC_008345.1 4622717 4622926 R SMART: helix-turn-helix domain protein; KEGG: tcx:Tcr_2183 transcriptional regulator, XRE family; transcriptional regulator, XRE family protein complement(4622717..4622926) Shewanella frigidimarina NCIMB 400 4280761 YP_752535.1 CDS Sfri_3871 NC_008345.1 4622926 4623507 R KEGG: lpp:lpp0491 hypothetical protein; hypothetical protein complement(4622926..4623507) Shewanella frigidimarina NCIMB 400 4280762 YP_752536.1 CDS Sfri_3872 NC_008345.1 4623840 4624196 D PFAM: regulatory protein, MerR; KEGG: vpa:VPA1142 putative transcriptional regulator, MerR family; transcriptional regulator, MerR family protein 4623840..4624196 Shewanella frigidimarina NCIMB 400 4280763 YP_752537.1 CDS Sfri_3873 NC_008345.1 4624255 4624632 D PFAM: Carboxymuconolactone decarboxylase; KEGG: vpa:VPA1141 gamma-carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 4624255..4624632 Shewanella frigidimarina NCIMB 400 4280764 YP_752538.1 CDS Sfri_3874 NC_008345.1 4624770 4626809 R PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO4699 oligopeptidase A; oligopeptidase A complement(4624770..4626809) Shewanella frigidimarina NCIMB 400 4280765 YP_752539.1 CDS Sfri_3875 NC_008345.1 4627162 4627941 D KEGG: son:SO4700 hypothetical protein; hypothetical protein 4627162..4627941 Shewanella frigidimarina NCIMB 400 4280766 YP_752540.1 CDS Sfri_3876 NC_008345.1 4628020 4628550 D KEGG: son:SO4701 hypothetical protein; hypothetical protein 4628020..4628550 Shewanella frigidimarina NCIMB 400 4280767 YP_752541.1 CDS Sfri_3877 NC_008345.1 4628628 4629983 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 4628628..4629983 Shewanella frigidimarina NCIMB 400 4280768 YP_752542.1 CDS Sfri_3878 NC_008345.1 4630202 4631236 R PFAM: Integrase, catalytic region; KEGG: bja:bll1855 putative transposase; integrase catalytic subunit complement(4630202..4631236) Shewanella frigidimarina NCIMB 400 4280769 YP_752543.1 CDS Sfri_3879 NC_008345.1 4631273 4632874 R PFAM: sodium/sulphate symporter; KEGG: bpe:BP0380 putative sodium:sulfate symportert; sodium/sulfate symporter complement(4631273..4632874) Shewanella frigidimarina NCIMB 400 4280770 YP_752544.1 CDS Sfri_3880 NC_008345.1 4633200 4633835 D hypothetical protein 4633200..4633835 Shewanella frigidimarina NCIMB 400 4280771 YP_752545.1 CDS Sfri_3881 NC_008345.1 4633893 4634363 D PFAM: adenylate cyclase; KEGG: bfs:BF0324 hypothetical protein; adenylate cyclase 4633893..4634363 Shewanella frigidimarina NCIMB 400 4280772 YP_752546.1 CDS Sfri_3882 NC_008345.1 4635124 4636470 D PFAM: phosphate-selective porin O and P; KEGG: noc:Noc_2418 phosphate-selective porin O and P; phosphate-selective porin O and P 4635124..4636470 Shewanella frigidimarina NCIMB 400 4280773 YP_752547.1 CDS Sfri_3883 NC_008345.1 4636483 4637310 D hypothetical protein 4636483..4637310 Shewanella frigidimarina NCIMB 400 4280774 YP_752548.1 CDS Sfri_3884 NC_008345.1 4637392 4638060 D PFAM: protein of unknown function DUF47; KEGG: tma:TM0914 hypothetical protein; hypothetical protein 4637392..4638060 Shewanella frigidimarina NCIMB 400 4280775 YP_752549.1 CDS Sfri_3885 NC_008345.1 4638072 4639115 D PFAM: phosphate transporter; KEGG: tma:TM0917 phosphate permease, putative; phosphate transporter 4638072..4639115 Shewanella frigidimarina NCIMB 400 4280776 YP_752550.1 CDS Sfri_3886 NC_008345.1 4639219 4639524 R KEGG: cps:CPS_1942 hypothetical protein; hypothetical protein complement(4639219..4639524) Shewanella frigidimarina NCIMB 400 4280777 YP_752551.1 CDS Sfri_3887 NC_008345.1 4639521 4642574 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cps:CPS_1943 cation efflux system protein CzcA; heavy metal efflux pump, CzcA family protein complement(4639521..4642574) Shewanella frigidimarina NCIMB 400 4280778 YP_752552.1 CDS Sfri_3888 NC_008345.1 4642576 4643604 R KEGG: cps:CPS_1944 hypothetical protein; hypothetical protein complement(4642576..4643604) Shewanella frigidimarina NCIMB 400 4280779 YP_752553.1 CDS Sfri_3889 NC_008345.1 4643601 4644905 R KEGG: ilo:IL0061 outer membrane protein; hypothetical protein complement(4643601..4644905) Shewanella frigidimarina NCIMB 400 4280780 YP_752554.1 CDS Sfri_3890 NC_008345.1 4644973 4645497 D PFAM: regulatory protein, LuxR; KEGG: cps:CPS_1945 hypothetical protein; transcriptional regulator, LuxR family protein 4644973..4645497 Shewanella frigidimarina NCIMB 400 4280781 YP_752555.1 CDS Sfri_3891 NC_008345.1 4645694 4646347 R putative transcriptional regulator, TetR family protein complement(4645694..4646347) Shewanella frigidimarina NCIMB 400 4280782 YP_752556.1 CDS Sfri_3892 NC_008345.1 4646469 4647335 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ret:RHE_CH02498 probable transcriptional regulator protein, LysR family; transcriptional regulator, LysR family protein 4646469..4647335 Shewanella frigidimarina NCIMB 400 4280783 YP_752557.1 CDS Sfri_3893 NC_008345.1 4647426 4648727 R TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter; KEGG: vfi:VF2354 anaerobic C4-dicarboxylate transporter; anaerobic c4-dicarboxylate antiporter complement(4647426..4648727) Shewanella frigidimarina NCIMB 400 4280784 YP_752558.1 CDS Sfri_3894 NC_008345.1 4649032 4650159 R KEGG: son:SO1412 hypothetical protein; hypothetical protein complement(4649032..4650159) Shewanella frigidimarina NCIMB 400 4280785 YP_752559.1 CDS Sfri_3895 NC_008345.1 4650200 4651453 R hypothetical protein complement(4650200..4651453) Shewanella frigidimarina NCIMB 400 4280786 YP_752560.1 CDS Sfri_3896 NC_008345.1 4651762 4652115 R KEGG: son:SO3623 tetraheme cytochrome c; tetraheme cytochrome c complement(4651762..4652115) Shewanella frigidimarina NCIMB 400 4280787 YP_752561.1 CDS Sfri_3897 NC_008345.1 4652144 4653664 R TIGRFAM: Twin-arginine translocation pathway signal; flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO3624 flavocytochrome c flavin subunit; flavocytochrome c complement(4652144..4653664) Shewanella frigidimarina NCIMB 400 4280788 YP_752562.1 CDS Sfri_3898 NC_008345.1 4653921 4654853 D KEGG: cps:CPS_3986 hypothetical protein; hypothetical protein 4653921..4654853 Shewanella frigidimarina NCIMB 400 4280789 YP_752563.1 CDS Sfri_3899 NC_008345.1 4655033 4655842 D PFAM: protein of unknown function DUF347; KEGG: mlo:mlr4456 putative integral membrane protein; hypothetical protein 4655033..4655842 Shewanella frigidimarina NCIMB 400 4280790 YP_752564.1 CDS Sfri_3900 NC_008345.1 4655868 4656626 D PFAM: protein of unknown function DUF347; KEGG: dar:Daro_2299 protein of unknown function DUF347; hypothetical protein 4655868..4656626 Shewanella frigidimarina NCIMB 400 4280791 YP_752565.1 CDS Sfri_3901 NC_008345.1 4656670 4657347 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dar:Daro_2298 response regulator receiver:transcriptional regulatory protein, C-terminal; two component transcriptional regulator, winged helix family protein 4656670..4657347 Shewanella frigidimarina NCIMB 400 4280792 YP_752566.1 CDS Sfri_3902 NC_008345.1 4657311 4658651 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: bur:Bcep18194_A5020 periplasmic sensor signal transduction histidine kinase; periplasmic sensor signal transduction histidine kinase 4657311..4658651 Shewanella frigidimarina NCIMB 400 4280793 YP_752567.1 CDS Sfri_3903 NC_008345.1 4658728 4660263 R PFAM: helix-turn-helix domain protein; KEGG: son:SO4705 transcriptional regulator, putative; transcriptional regulator, XRE family protein complement(4658728..4660263) Shewanella frigidimarina NCIMB 400 4280794 YP_752568.1 CDS Sfri_3904 NC_008345.1 4660411 4660929 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4660411..4660929 Shewanella frigidimarina NCIMB 400 4280795 YP_752569.1 CDS Sfri_3905 NC_008345.1 4661078 4662541 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO3660.1 hypothetical ferredoxin; 4Fe-4S ferredoxin complement(4661078..4662541) Shewanella frigidimarina NCIMB 400 4280796 YP_752570.1 CDS Sfri_3906 NC_008345.1 4662715 4664157 R KEGG: son:SO3660 sigma-54 dependent transcriptional regulator/sensory box protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AAA ATPase; transcriptional regulator, Fis family protein complement(4662715..4664157) Shewanella frigidimarina NCIMB 400 4280797 YP_752571.1 CDS Sfri_3907 NC_008345.1 4664334 4664900 R PFAM: Paraquat-inducible protein A; KEGG: son:SO4710 hypothetical protein; paraquat-inducible protein A complement(4664334..4664900) Shewanella frigidimarina NCIMB 400 4280798 YP_752572.1 CDS Sfri_3908 NC_008345.1 4665127 4665798 D KEGG: psp:PSPPH_3940 hypothetical protein; hypothetical protein 4665127..4665798 Shewanella frigidimarina NCIMB 400 4280799 YP_752573.1 CDS Sfri_3909 NC_008345.1 4665800 4668130 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: ilo:IL0935 signaling protein with a sensor domain, HAMP, GGDEF and EAL domains; diguanylate cyclase/phosphodiesterase 4665800..4668130 Shewanella frigidimarina NCIMB 400 4280800 YP_752574.1 CDS Sfri_3910 NC_008345.1 4668130 4668972 D KEGG: ilo:IL0934 hypothetical protein; hypothetical protein 4668130..4668972 Shewanella frigidimarina NCIMB 400 4280801 YP_752575.1 CDS Sfri_3911 NC_008345.1 4668972 4669403 D PFAM: globin; KEGG: pha:PSHAa0458 protozoan/cyanobacterial globin protein; globin 4668972..4669403 Shewanella frigidimarina NCIMB 400 4280802 YP_752576.1 CDS Sfri_3912 NC_008345.1 4669435 4670628 R PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO4711 HD domain protein; metal dependent phosphohydrolase complement(4669435..4670628) Shewanella frigidimarina NCIMB 400 4280803 YP_752577.1 CDS Sfri_3913 NC_008345.1 4670949 4672331 D TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: son:SO4713 menaquinone-specific isochorismate synthase, putative; isochorismate synthase 4670949..4672331 Shewanella frigidimarina NCIMB 400 4280804 YP_752578.1 CDS Sfri_3914 NC_008345.1 4672636 4673316 D TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: son:SO4715 hypothetical protein; hypothetical protein 4672636..4673316 Shewanella frigidimarina NCIMB 400 4280805 YP_752579.1 CDS Sfri_3915 NC_008345.1 4674010 4676154 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4717 sensor histidine kinase; sensor signal transduction histidine kinase complement(4674010..4676154) Shewanella frigidimarina NCIMB 400 4280806 YP_752580.1 CDS Sfri_3916 NC_008345.1 4676157 4677545 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO4718 sigma-54 dependent response regulator; Fis family two component sigma-54-specific transcriptional regulator complement(4676157..4677545) Shewanella frigidimarina NCIMB 400 4280807 YP_752581.1 CDS Sfri_3917 NC_008345.1 4677840 4678664 D KEGG: son:SO4719 putative sulfate transport system substrate-binding protein; putative sulfate transport system substrate-binding protein 4677840..4678664 Shewanella frigidimarina NCIMB 400 4280808 YP_752582.1 CDS Sfri_3918 NC_008345.1 4678661 4679368 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4720 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4678661..4679368 Shewanella frigidimarina NCIMB 400 4280809 YP_752583.1 CDS Sfri_3919 NC_008345.1 4679370 4680119 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4721 ABC transporter, ATP-binding protein; ABC transporter 4679370..4680119 Shewanella frigidimarina NCIMB 400 4280810 YP_752584.1 CDS Sfri_3920 NC_008345.1 4680103 4680693 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: son:SO4722 molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein A 4680103..4680693 Shewanella frigidimarina NCIMB 400 4280811 YP_752585.1 CDS Sfri_3921 NC_008345.1 4680711 4682528 D TIGRFAM: molybdenum cofactor synthesis domain; molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin binding domain; molybdopterin-guanine dinucleotide biosynthesis MobB region; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: son:SO4723 molybdopterin biosynthesis MoeA protein, putative; putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA 4680711..4682528 Shewanella frigidimarina NCIMB 400 4280812 YP_752586.1 CDS Sfri_3922 NC_008345.1 4682537 4683523 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 4682537..4683523 Shewanella frigidimarina NCIMB 400 4280813 YP_752587.1 CDS Sfri_3923 NC_008345.1 4683630 4684088 D KEGG: son:SO4725 hypothetical protein; hypothetical protein 4683630..4684088 Shewanella frigidimarina NCIMB 400 4280814 YP_752588.1 CDS Sfri_3924 NC_008345.1 4684098 4684913 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 4684098..4684913 Shewanella frigidimarina NCIMB 400 4280815 YP_752589.1 CDS Sfri_3925 NC_008345.1 4685008 4686507 R KEGG: son:SO4685 hypothetical protein; hypothetical protein complement(4685008..4686507) Shewanella frigidimarina NCIMB 400 4280816 YP_752590.1 CDS coaD NC_008345.1 4686512 4687018 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(4686512..4687018) Shewanella frigidimarina NCIMB 400 4280817 YP_752591.1 CDS Sfri_3927 NC_008345.1 4687124 4687876 R PFAM: glycosyl transferase, family 25; KEGG: msu:MS0446 glycosyltransferase involved in LPS biosynthesis; glycosyl transferase family protein complement(4687124..4687876) Shewanella frigidimarina NCIMB 400 4280818 YP_752592.1 CDS Sfri_3928 NC_008345.1 4688380 4689381 D KEGG: hit:NTHI0649 ADP-heptose--lipooligosaccharide heptosyltransferase III; ADP-heptose--LPS heptosyltransferase III 4688380..4689381 Shewanella frigidimarina NCIMB 400 4280819 YP_752593.1 CDS Sfri_3929 NC_008345.1 4689438 4690391 D TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: pca:Pcar_0024 ADP-L-glycero-D-mannoheptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 4689438..4690391 Shewanella frigidimarina NCIMB 400 4280820 YP_752594.1 CDS Sfri_3930 NC_008345.1 4690492 4690884 R TIGRFAM: cytidyltransferase-related domain; PFAM: cytidylyltransferase; KEGG: cps:CPS_4205 glycerol-3-phosphate cytidyltransferase; cytidyltransferase-like protein complement(4690492..4690884) Shewanella frigidimarina NCIMB 400 4280821 YP_752595.1 CDS Sfri_3931 NC_008345.1 4690893 4691951 R PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: gox:GOX2059 hypothetical protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase complement(4690893..4691951) Shewanella frigidimarina NCIMB 400 4280822 YP_752596.1 CDS Sfri_3932 NC_008345.1 4692170 4693285 D KEGG: reu:Reut_A2557 glycosyl transferase, family 9; ADP-heptose--LPS heptosyltransferase-like protein 4692170..4693285 Shewanella frigidimarina NCIMB 400 4280823 YP_752597.1 CDS Sfri_3933 NC_008345.1 4693327 4694175 D PFAM: glycosyl transferase, family 8; glycosyl transferase family protein 4693327..4694175 Shewanella frigidimarina NCIMB 400 4280824 YP_752598.1 CDS Sfri_3934 NC_008345.1 4694218 4695249 R PFAM: glycosyl transferase, family 9; KEGG: son:SO4678 heptosyl transferase, glycosyltransferase family 9 protein; glycosyl transferase family protein complement(4694218..4695249) Shewanella frigidimarina NCIMB 400 4280825 YP_752599.1 CDS Sfri_3935 NC_008345.1 4695360 4696088 D catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 4695360..4696088 Shewanella frigidimarina NCIMB 400 4280826 YP_752600.1 CDS Sfri_3936 NC_008345.1 4696178 4697440 R PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: son:SO4676 3-deoxy-D-manno-octulosonic-acid (KDO) transferase; 3-deoxy-D-manno-octulosonic-acid transferase complement(4696178..4697440) Shewanella frigidimarina NCIMB 400 4280827 YP_752601.1 CDS Sfri_3937 NC_008345.1 4697558 4698220 D PFAM: regulatory protein, TetR; KEGG: son:SO4675 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein 4697558..4698220 Shewanella frigidimarina NCIMB 400 4280828 YP_752602.1 CDS Sfri_3938 NC_008345.1 4698548 4699741 D catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 4698548..4699741 Shewanella frigidimarina NCIMB 400 4280829 YP_752603.1 CDS tdh NC_008345.1 4699828 4700853 D converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 4699828..4700853 Shewanella frigidimarina NCIMB 400 4280830 YP_752604.1 CDS Sfri_3940 NC_008345.1 4700979 4701287 D PFAM: Rhodanese domain protein; KEGG: son:SO4672 glpE protein; rhodanese domain-containing protein 4700979..4701287 Shewanella frigidimarina NCIMB 400 4280831 YP_752605.1 CDS Sfri_3941 NC_008345.1 4701284 4702135 D PFAM: Rhomboid family protein; KEGG: son:SO4671 glpG protein; rhomboid family protein 4701284..4702135 Shewanella frigidimarina NCIMB 400 4280832 YP_752606.1 CDS Sfri_3942 NC_008345.1 4702218 4702871 R PFAM: ThiJ/PfpI domain protein; KEGG: son:SO4670 enhancing lycopene biosynthesis protein; isoprenoid biosynthesis protein with amidotransferase-like domain complement(4702218..4702871) Shewanella frigidimarina NCIMB 400 4280833 YP_752607.1 CDS Sfri_3943 NC_008345.1 4703403 4706159 D KEGG: son:SO4669 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I 4703403..4706159 Shewanella frigidimarina NCIMB 400 4280834 YP_752608.1 CDS engB NC_008345.1 4706897 4707571 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(4706897..4707571) Shewanella frigidimarina NCIMB 400 4280835 YP_752609.1 CDS Sfri_3945 NC_008345.1 4707835 4708458 D PFAM: cytochrome c, class I; KEGG: son:SO4666 cytochrome c; cytochrome c, class I 4707835..4708458 Shewanella frigidimarina NCIMB 400 4280836 YP_752610.1 CDS Sfri_3946 NC_008345.1 4709299 4709961 D KEGG: son:SO4727 hypothetical protein; hypothetical protein 4709299..4709961 Shewanella frigidimarina NCIMB 400 4280837 YP_752611.1 CDS Sfri_3947 NC_008345.1 4710017 4710565 D KEGG: son:SO4728 hypothetical protein; hypothetical protein 4710017..4710565 Shewanella frigidimarina NCIMB 400 4280838 YP_752612.1 CDS Sfri_3948 NC_008345.1 4710661 4711128 D KEGG: son:SO4729 hypothetical protein; hypothetical protein 4710661..4711128 Shewanella frigidimarina NCIMB 400 4280839 YP_752613.1 CDS Sfri_3949 NC_008345.1 4711490 4712044 D PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0123 acyltransferase family protein; phospholipid/glycerol acyltransferase 4711490..4712044 Shewanella frigidimarina NCIMB 400 4280840 YP_752614.1 CDS Sfri_3950 NC_008345.1 4712143 4713567 R PFAM: alpha/beta hydrolase fold; KEGG: bha:BH2279 hypothetical protein; alpha/beta hydrolase complement(4712143..4713567) Shewanella frigidimarina NCIMB 400 4280841 YP_752615.1 CDS Sfri_3951 NC_008345.1 4713643 4714911 R PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0121 hypothetical small-conductance mechanosensitive channel; MscS mechanosensitive ion channel complement(4713643..4714911) Shewanella frigidimarina NCIMB 400 4280842 YP_752616.1 CDS Sfri_3952 NC_008345.1 4715257 4716795 R catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase complement(4715257..4716795) Shewanella frigidimarina NCIMB 400 4280843 YP_752617.1 CDS Sfri_3953 NC_008345.1 4716799 4718469 R catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase complement(4716799..4718469) Shewanella frigidimarina NCIMB 400 4280844 YP_752618.1 CDS Sfri_3954 NC_008345.1 4718565 4719308 R TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: son:SO0096 histidine utilization repressor; transcriptional regulator, histidine utilization repressor, GntR family protein complement(4718565..4719308) Shewanella frigidimarina NCIMB 400 4280845 YP_752619.1 CDS Sfri_3955 NC_008345.1 4719406 4720638 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 4719406..4720638 Shewanella frigidimarina NCIMB 400 4280846 YP_752620.1 CDS Sfri_3956 NC_008345.1 4720958 4721740 D TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pha:PSHAa1832 cryptic haloacid dehalogenase 1 (partial); haloacid dehalogenase, type II 4720958..4721740 Shewanella frigidimarina NCIMB 400 4280847 YP_752621.1 CDS Sfri_3957 NC_008345.1 4721921 4723582 D PFAM: Amidohydrolase 3; KEGG: cps:CPS_2795 amidohydrolase family protein; amidohydrolase 3 4721921..4723582 Shewanella frigidimarina NCIMB 400 4280848 YP_752622.1 CDS Sfri_3958 NC_008345.1 4723737 4724009 D KEGG: son:SO0637 hypothetical protein; hypothetical protein 4723737..4724009 Shewanella frigidimarina NCIMB 400 4280849 YP_752623.1 CDS Sfri_3959 NC_008345.1 4724009 4724503 D PFAM: GCN5-related N-acetyltransferase; KEGG: vvu:VV12537 putative acetyltransferase; N-acetyltransferase GCN5 4724009..4724503 Shewanella frigidimarina NCIMB 400 4280850 YP_752624.1 CDS Sfri_3960 NC_008345.1 4724855 4725682 R PFAM: Integrase, catalytic region; KEGG: xcv:XCV3412 ISxac2 transposase; integrase catalytic subunit complement(4724855..4725682) Shewanella frigidimarina NCIMB 400 4280851 YP_752625.1 CDS Sfri_3961 NC_008345.1 4725676 4725942 R PFAM: transposase IS3/IS911 family protein; KEGG: son:SO4268 ISSod2, transposase OrfA; transposase IS3/IS911 family protein complement(4725676..4725942) Shewanella frigidimarina NCIMB 400 4280852 YP_752626.1 CDS Sfri_3962 NC_008345.1 4725978 4726481 R hypothetical protein complement(4725978..4726481) Shewanella frigidimarina NCIMB 400 4280853 YP_752627.1 CDS Sfri_3963 NC_008345.1 4726988 4727227 R KEGG: son:SO3280 hypothetical protein; hypothetical protein complement(4726988..4727227) Shewanella frigidimarina NCIMB 400 4280854 YP_752628.1 CDS Sfri_3964 NC_008345.1 4727409 4729274 D PFAM: protein of unknown function DUF885; KEGG: cps:CPS_3202 putative lipoprotein; hypothetical protein 4727409..4729274 Shewanella frigidimarina NCIMB 400 4280855 YP_752629.1 CDS Sfri_3965 NC_008345.1 4729417 4730622 R KEGG: ilo:IL2526 predicted hydrolase of the alpha/beta superfamily; hypothetical protein complement(4729417..4730622) Shewanella frigidimarina NCIMB 400 4280856 YP_752630.1 CDS Sfri_3966 NC_008345.1 4730835 4731515 D TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0084 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4730835..4731515 Shewanella frigidimarina NCIMB 400 4280857 YP_752631.1 CDS Sfri_3967 NC_008345.1 4731581 4732606 R KEGG: son:SO2207 hypothetical protein; hypothetical protein complement(4731581..4732606) Shewanella frigidimarina NCIMB 400 4280858 YP_752632.1 CDS Sfri_3968 NC_008345.1 4732744 4733166 D PFAM: thioesterase superfamily protein; KEGG: son:SO0080 hypothetical 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 4732744..4733166 Shewanella frigidimarina NCIMB 400 4280859 YP_752633.1 CDS Sfri_3969 NC_008345.1 4733233 4733490 D KEGG: son:SO0079 hypothetical protein; hypothetical protein 4733233..4733490 Shewanella frigidimarina NCIMB 400 4280860 YP_752634.1 CDS Sfri_3970 NC_008345.1 4733511 4733978 R PFAM: thioesterase superfamily protein; KEGG: son:SO0077 hypothetical 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein complement(4733511..4733978) Shewanella frigidimarina NCIMB 400 4280861 YP_752635.1 CDS Sfri_3971 NC_008345.1 4734204 4734719 R hypothetical protein complement(4734204..4734719) Shewanella frigidimarina NCIMB 400 4280862 YP_752636.1 CDS Sfri_3972 NC_008345.1 4734719 4735660 R KEGG: pfl:PFL_0585 hypothetical protein; hypothetical protein complement(4734719..4735660) Shewanella frigidimarina NCIMB 400 4280863 YP_752637.1 CDS Sfri_3973 NC_008345.1 4735787 4737580 R PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0075 AMP-binding family protein; AMP-dependent synthetase and ligase complement(4735787..4737580) Shewanella frigidimarina NCIMB 400 4280864 YP_752638.1 CDS Sfri_3974 NC_008345.1 4737707 4738999 R KEGG: son:SO0074 hypothetical protein; hypothetical protein complement(4737707..4738999) Shewanella frigidimarina NCIMB 400 4280865 YP_752639.1 CDS Sfri_3975 NC_008345.1 4738996 4739865 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0073 ABC transporter, ATP-binding protein; ABC transporter complement(4738996..4739865) Shewanella frigidimarina NCIMB 400 4280866 YP_752640.1 CDS Sfri_3976 NC_008345.1 4739911 4740288 R PFAM: regulatory protein GntR, HTH; KEGG: son:SO0072 transcriptional regulator, GntR family; transcriptional regulator, GntR family protein complement(4739911..4740288) Shewanella frigidimarina NCIMB 400 4280867 YP_752641.1 CDS Sfri_3977 NC_008345.1 4740383 4741981 D PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: son:SO0071 hydrolase, alpha/beta hydrolase fold family; TAP domain-containing protein 4740383..4741981 Shewanella frigidimarina NCIMB 400 4280868 YP_752642.1 CDS Sfri_3978 NC_008345.1 4741984 4742718 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0070 ATP-binding transport protein NatA; ABC transporter 4741984..4742718 Shewanella frigidimarina NCIMB 400 4280869 YP_752643.1 CDS Sfri_3979 NC_008345.1 4742718 4743851 D PFAM: ABC-2 type transporter; KEGG: son:SO0069 transport protein, putative; ABC-2 type transporter 4742718..4743851 Shewanella frigidimarina NCIMB 400 4280870 YP_752644.1 CDS Sfri_3980 NC_008345.1 4744004 4744228 D KEGG: son:SO0068 hypothetical protein; hypothetical protein 4744004..4744228 Shewanella frigidimarina NCIMB 400 4280871 YP_752645.1 CDS Sfri_3981 NC_008345.1 4744281 4745843 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; CHASE4 domain protein; KEGG: vch:VC2285 GGDEF family protein; diguanylate cyclase complement(4744281..4745843) Shewanella frigidimarina NCIMB 400 4280872 YP_752646.1 CDS mogA NC_008345.1 4746064 4746597 R forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA complement(4746064..4746597) Shewanella frigidimarina NCIMB 400 4280873 YP_752647.1 CDS Sfri_3983 NC_008345.1 4746915 4747412 D PFAM: methylation site containing protein; KEGG: son:SO4105 MSHA pilin protein MshA; methylation site containing protein 4746915..4747412 Shewanella frigidimarina NCIMB 400 4280874 YP_752648.1 CDS Sfri_3984 NC_008345.1 4747523 4748158 R PFAM: regulatory protein, TetR; KEGG: son:SO3494 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein complement(4747523..4748158) Shewanella frigidimarina NCIMB 400 4280875 YP_752649.1 CDS Sfri_3985 NC_008345.1 4748570 4749802 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3493 RND multidrug efflux membrane fusion protein MexE; RND family efflux transporter MFP subunit 4748570..4749802 Shewanella frigidimarina NCIMB 400 4280876 YP_752650.1 CDS Sfri_3986 NC_008345.1 4749815 4752976 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO3492 RND multidrug efflux transporter MexF; transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein 4749815..4752976 Shewanella frigidimarina NCIMB 400 4280877 YP_752651.1 CDS Sfri_3987 NC_008345.1 4753067 4754026 R PFAM: PfkB domain protein; KEGG: cps:CPS_2648 carbohydrate kinase, PfkB family; ribokinase-like domain-containing protein complement(4753067..4754026) Shewanella frigidimarina NCIMB 400 4280878 YP_752652.1 CDS Sfri_3988 NC_008345.1 4754160 4756556 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC1136 TonB-dependent receptor; TonB-dependent receptor complement(4754160..4756556) Shewanella frigidimarina NCIMB 400 4280879 YP_752653.1 CDS Sfri_3989 NC_008345.1 4756825 4758045 R PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC1133 transporter, putative; major facilitator transporter complement(4756825..4758045) Shewanella frigidimarina NCIMB 400 4280880 YP_752654.1 CDS Sfri_3990 NC_008345.1 4758234 4759715 D KEGG: atc:AGR_pTi_251 sucrose phosphorylase SplA; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; sucrose phosphorylase 4758234..4759715 Shewanella frigidimarina NCIMB 400 4280881 YP_752655.1 CDS Sfri_3991 NC_008345.1 4759846 4760877 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: hch:HCH_04796 transcriptional regulator; transcriptional regulator, LacI family protein complement(4759846..4760877) Shewanella frigidimarina NCIMB 400 4280882 YP_752656.1 CDS Sfri_3992 NC_008345.1 4761018 4761608 R PFAM: NLP/P60 protein; KEGG: son:SO0061 lipoprotein, NLP/P60 family; NLP/P60 protein complement(4761018..4761608) Shewanella frigidimarina NCIMB 400 4280883 YP_752657.1 CDS Sfri_3993 NC_008345.1 4761669 4762253 R PFAM: regulatory protein, TetR; KEGG: nmu:Nmul_A1967 transcriptional regulator, TetR family; transcriptional regulator, TetR family protein complement(4761669..4762253) Shewanella frigidimarina NCIMB 400 4280884 YP_752658.1 CDS Sfri_3994 NC_008345.1 4762638 4762910 R hypothetical protein complement(4762638..4762910) Shewanella frigidimarina NCIMB 400 4280885 YP_752659.1 CDS Sfri_3995 NC_008345.1 4762991 4763539 R PFAM: transport-associated; KEGG: pha:PSHAa0325 hypothetical protein; transport-associated complement(4762991..4763539) Shewanella frigidimarina NCIMB 400 4280886 YP_752660.1 CDS Sfri_3996 NC_008345.1 4763930 4764466 R hypothetical protein complement(4763930..4764466) Shewanella frigidimarina NCIMB 400 4280887 YP_752661.1 CDS Sfri_3997 NC_008345.1 4764677 4766044 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: vpa:VP0080 putative sigma-54 interacting response regulator transcription regulator protein; sigma54 specific transcriptional regulator, Fis family protein 4764677..4766044 Shewanella frigidimarina NCIMB 400 4280888 YP_752662.1 CDS Sfri_3998 NC_008345.1 4766065 4767717 R PFAM: Dual specificity protein phosphatase; diacylglycerol kinase, catalytic region; KEGG: pha:PSHAb0333 methylglyoxal synthase; hypothetical protein complement(4766065..4767717) Shewanella frigidimarina NCIMB 400 4280889 YP_752663.1 CDS Sfri_3999 NC_008345.1 4767934 4768128 R KEGG: pha:PSHAa0536 hypothetical protein; hypothetical protein complement(4767934..4768128) Shewanella frigidimarina NCIMB 400 4280890 YP_752664.1 CDS Sfri_4000 NC_008345.1 4768208 4768384 R PFAM: protein of unknown function DUF1328; KEGG: pha:PSHAa0537 hypothetical protein; hypothetical protein complement(4768208..4768384) Shewanella frigidimarina NCIMB 400 4280891 YP_752665.1 CDS Sfri_4001 NC_008345.1 4768712 4769929 R PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3354 hypothetical protein; major facilitator transporter complement(4768712..4769929) Shewanella frigidimarina NCIMB 400 4280892 YP_752666.1 CDS Sfri_4002 NC_008345.1 4769935 4770945 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase complement(4769935..4770945) Shewanella frigidimarina NCIMB 400 4280893 YP_752667.1 CDS Sfri_4003 NC_008345.1 4771082 4772101 R PFAM: Bile acid:sodium symporter; KEGG: cps:CPS_3442 putative arsenical-resistance protein; bile acid:sodium symporter complement(4771082..4772101) Shewanella frigidimarina NCIMB 400 4280894 YP_752668.1 CDS Sfri_4004 NC_008345.1 4772179 4772991 R PFAM: low molecular weight phosphotyrosine protein phosphatase; regulatory protein, ArsR; KEGG: cps:CPS_3358 transcriptional regulator, ArsR family; transcriptional regulator, ArsR family protein complement(4772179..4772991) Shewanella frigidimarina NCIMB 400 4280895 YP_752669.1 CDS Sfri_4005 NC_008345.1 4773208 4775298 R KEGG: gsu:GSU1927 sensory box/response regulator; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; SMART: PAS domain containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) complement(4773208..4775298) Shewanella frigidimarina NCIMB 400 4280896 YP_752670.1 CDS Sfri_4006 NC_008345.1 4775298 4777646 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: tbd:Tbd_1268 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase complement(4775298..4777646) Shewanella frigidimarina NCIMB 400 4280897 YP_752671.1 CDS Sfri_4007 NC_008345.1 4777643 4778182 R KEGG: hch:HCH_02557 hypothetical protein; hypothetical protein complement(4777643..4778182) Shewanella frigidimarina NCIMB 400 4280898 YP_752672.1 CDS Sfri_4008 NC_008345.1 4778193 4780235 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug; TonB-dependent receptor, plug complement(4778193..4780235) Shewanella frigidimarina NCIMB 400 4280899 YP_752673.1 CDS Sfri_4009 NC_008345.1 4780587 4781123 R KEGG: hch:HCH_02557 hypothetical protein; hypothetical protein complement(4780587..4781123) Shewanella frigidimarina NCIMB 400 4280900 YP_752674.1 CDS Sfri_4010 NC_008345.1 4781134 4783170 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug; TonB-dependent receptor, plug complement(4781134..4783170) Shewanella frigidimarina NCIMB 400 4280901 YP_752675.1 CDS Sfri_4011 NC_008345.1 4783766 4784017 D PFAM: SpoVT/AbrB domain protein; KEGG: xac:XACa0028 plasmid stable inheritance protein I; transcriptional regulator/antitoxin MazE 4783766..4784017 Shewanella frigidimarina NCIMB 400 4280902 YP_752676.1 CDS Sfri_4012 NC_008345.1 4784242 4785741 R KEGG: hch:HCH_03615 hypothetical protein; hypothetical protein complement(4784242..4785741) Shewanella frigidimarina NCIMB 400 4280903 YP_752677.1 CDS Sfri_4013 NC_008345.1 4785780 4786592 R PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit complement(4785780..4786592) Shewanella frigidimarina NCIMB 400 4280904 YP_752678.1 CDS Sfri_4014 NC_008345.1 4786646 4786957 R PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein complement(4786646..4786957) Shewanella frigidimarina NCIMB 400 4280905 YP_752679.1 CDS Sfri_4015 NC_008345.1 4787021 4787548 D hypothetical protein 4787021..4787548 Shewanella frigidimarina NCIMB 400 4280906 YP_752680.1 CDS Sfri_4016 NC_008345.1 4787575 4788936 D hypothetical protein 4787575..4788936 Shewanella frigidimarina NCIMB 400 4280907 YP_752681.1 CDS Sfri_4017 NC_008345.1 4789127 4790308 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0054 conserved hypothetical protein TIGR00275; hypothetical protein complement(4789127..4790308) Shewanella frigidimarina NCIMB 400 4280908 YP_752682.1 CDS gpsA NC_008345.1 4790433 4791449 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(4790433..4791449) Shewanella frigidimarina NCIMB 400 4280909 YP_752683.1 CDS Sfri_4019 NC_008345.1 4791453 4791926 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(4791453..4791926) Shewanella frigidimarina NCIMB 400 4280910 YP_752684.1 CDS Sfri_4020 NC_008345.1 4792133 4792567 R PFAM: Rhodanese domain protein; KEGG: son:SO0050 rhodanese domain protein; rhodanese domain-containing protein complement(4792133..4792567) Shewanella frigidimarina NCIMB 400 4280911 YP_752685.1 CDS Sfri_4021 NC_008345.1 4792819 4794360 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 4792819..4794360 Shewanella frigidimarina NCIMB 400 4280912 YP_752686.1 CDS Sfri_4022 NC_008345.1 4794371 4795504 D PFAM: peptidase M23B; KEGG: son:SO0048 peptidase, M23/M37 family; peptidase M23B 4794371..4795504 Shewanella frigidimarina NCIMB 400 4280913 YP_752687.1 CDS Sfri_4023 NC_008345.1 4795738 4796454 D PFAM: protein of unknown function DUF610, YibQ; KEGG: son:SO0046 hypothetical protein; hypothetical protein 4795738..4796454 Shewanella frigidimarina NCIMB 400 4280914 YP_752688.1 CDS Sfri_4024 NC_008345.1 4796429 4796884 R TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: son:SO0045 Rrf2 family protein; BadM/Rrf2 family transcriptional regulator complement(4796429..4796884) Shewanella frigidimarina NCIMB 400 4280915 YP_752689.1 CDS Sfri_4025 NC_008345.1 4796920 4797171 R PFAM: protein of unknown function UPF0153; KEGG: son:SO0044 hypothetical protein; hypothetical protein complement(4796920..4797171) Shewanella frigidimarina NCIMB 400 4280916 YP_752690.1 CDS rihA NC_008345.1 4797414 4798346 D Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 4797414..4798346 Shewanella frigidimarina NCIMB 400 4280917 YP_752691.1 CDS Sfri_4027 NC_008345.1 4798447 4798899 D KEGG: son:SO2875 ISSod10, transposase OrfB; hypothetical protein 4798447..4798899 Shewanella frigidimarina NCIMB 400 4280918 YP_752692.1 CDS Sfri_4028 NC_008345.1 4804828 4806255 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4737 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin complement(4804828..4806255) Shewanella frigidimarina NCIMB 400 4280919 YP_752693.1 CDS Sfri_4029 NC_008345.1 4806332 4806679 D KEGG: son:SO4738 hypothetical protein; hypothetical protein 4806332..4806679 Shewanella frigidimarina NCIMB 400 4280920 YP_752694.1 CDS Sfri_4030 NC_008345.1 4806779 4807693 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 4806779..4807693 Shewanella frigidimarina NCIMB 400 4280921 YP_752695.1 CDS Sfri_4031 NC_008345.1 4807891 4808112 D KEGG: son:SO4740 hypothetical protein; hypothetical protein 4807891..4808112 Shewanella frigidimarina NCIMB 400 4280922 YP_752696.1 CDS Sfri_4032 NC_008345.1 4808891 4810492 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cps:CPS_4692 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4808891..4810492 Shewanella frigidimarina NCIMB 400 4280923 YP_752697.1 CDS Sfri_4033 NC_008345.1 4810511 4811272 R PFAM: PepSY-associated TM helix domain protein; KEGG: cps:CPS_4600 hypothetical protein; PepSY-associated TM helix domain-containing protein complement(4810511..4811272) Shewanella frigidimarina NCIMB 400 4280924 YP_752698.1 CDS Sfri_4034 NC_008345.1 4811314 4811844 R PFAM: FMN-binding domain protein; KEGG: cps:CPS_4601 hypothetical protein; FMN-binding domain-containing protein complement(4811314..4811844) Shewanella frigidimarina NCIMB 400 4280925 YP_752699.1 CDS Sfri_4035 NC_008345.1 4811959 4813134 R PFAM: phosphate-selective porin O and P; KEGG: cps:CPS_4602 hypothetical protein; phosphate-selective porin O and P complement(4811959..4813134) Shewanella frigidimarina NCIMB 400 4280926 YP_752700.1 CDS Sfri_4036 NC_008345.1 4813681 4814346 D KEGG: sde:Sde_2848 histidine kinase; histidine kinase 4813681..4814346 Shewanella frigidimarina NCIMB 400 4280927 YP_752701.1 CDS Sfri_4037 NC_008345.1 4814835 4816028 D SMART: PUA domain containing protein; KEGG: son:SO1149 hypothetical SAM-dependent methyltransferase; PUA domain-containing protein 4814835..4816028 Shewanella frigidimarina NCIMB 400 4280928 YP_752702.1 CDS Sfri_4038 NC_008345.1 4816195 4816533 R PFAM: protein of unknown function DUF805; KEGG: cps:CPS_3606 hypothetical protein; hypothetical protein complement(4816195..4816533) Shewanella frigidimarina NCIMB 400 4280929 YP_752703.1 CDS Sfri_4039 NC_008345.1 4816682 4817743 R PFAM: protein of unknown function DUF450; KEGG: vpa:VPA1572 hypothetical protein; hypothetical protein complement(4816682..4817743) Shewanella frigidimarina NCIMB 400 4280930 YP_752704.1 CDS Sfri_4040 NC_008345.1 4817885 4819714 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(4817885..4819714) Shewanella frigidimarina NCIMB 400 4280931 YP_752705.1 CDS Sfri_4041 NC_008345.1 4819752 4820522 R PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: son:SO4742 transcriptional regulator, DeoR family; DeoR family transcriptional regulator complement(4819752..4820522) Shewanella frigidimarina NCIMB 400 4280932 YP_752706.1 CDS Sfri_4042 NC_008345.1 4820709 4822802 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4743 TonB-dependent receptor, putative; TonB-dependent siderophore receptor complement(4820709..4822802) Shewanella frigidimarina NCIMB 400 4280933 YP_752707.1 CDS Sfri_4043 NC_008345.1 4823072 4824436 R KEGG: son:SO4745 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; UDP-N-acetylglucosamine pyrophosphorylase complement(4823072..4824436) Shewanella frigidimarina NCIMB 400 4280934 YP_752708.1 CDS Sfri_4044 NC_008345.1 4824585 4825013 R TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase, delta/epsilon subunit; KEGG: son:SO4746 ATP synthase F1, epsilon subunit; ATP synthase F1 subunit epsilon complement(4824585..4825013) Shewanella frigidimarina NCIMB 400 4280935 YP_752709.1 CDS Sfri_4045 NC_008345.1 4825050 4826441 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(4825050..4826441) Shewanella frigidimarina NCIMB 400 4280936 YP_752710.1 CDS Sfri_4046 NC_008345.1 4826477 4827337 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(4826477..4827337) Shewanella frigidimarina NCIMB 400 4280937 YP_752711.1 CDS Sfri_4047 NC_008345.1 4827391 4828932 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(4827391..4828932) Shewanella frigidimarina NCIMB 400 4280938 YP_752712.1 CDS Sfri_4048 NC_008345.1 4828947 4829480 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(4828947..4829480) Shewanella frigidimarina NCIMB 400 4280939 YP_752713.1 CDS Sfri_4049 NC_008345.1 4829497 4829967 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(4829497..4829967) Shewanella frigidimarina NCIMB 400 4280940 YP_752714.1 CDS Sfri_4050 NC_008345.1 4830005 4830256 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(4830005..4830256) Shewanella frigidimarina NCIMB 400 4280941 YP_752715.1 CDS Sfri_4051 NC_008345.1 4830322 4831116 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(4830322..4831116) Shewanella frigidimarina NCIMB 400 4280942 YP_752716.1 CDS Sfri_4052 NC_008345.1 4831129 4831518 R PFAM: ATP synthase I chain; KEGG: son:SO4754 ATP synthase protein I; ATP synthase I chain complement(4831129..4831518) Shewanella frigidimarina NCIMB 400 4280943 YP_752717.1 CDS Sfri_4053 NC_008345.1 4831738 4832619 R TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: son:SO4755 ParB family protein; parB-like partition proteins complement(4831738..4832619) Shewanella frigidimarina NCIMB 400 4280944 YP_752718.1 CDS Sfri_4054 NC_008345.1 4832629 4833417 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO4756 ParA family protein; cobyrinic acid a,c-diamide synthase complement(4832629..4833417) Shewanella frigidimarina NCIMB 400 4280945 YP_752719.1 CDS gidB NC_008345.1 4833480 4834121 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(4833480..4834121) Shewanella frigidimarina NCIMB 400 4280946 YP_752720.1 CDS Sfri_4056 NC_008345.1 4834213 4836102 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(4834213..4836102) Shewanella frigidimarina NCIMB 400 4280947 YP_752721.1 CDS Sfri_4057 NC_008345.1 4836574 4837014 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(4836574..4837014) Shewanella frigidimarina NCIMB 400 4280948 YP_752722.1 CDS Sfri_4058 NC_008345.1 4837298 4838143 R PFAM: putative esterase; KEGG: ppr:PBPRA0783 putative esterase; carboxylesterase complement(4837298..4838143) Shewanella frigidimarina NCIMB 400 4280949 YP_752723.1 CDS Sfri_4059 NC_008345.1 4838217 4839347 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ppr:PBPRA0784 putative alcohol dehydrogenase class III; alcohol dehydrogenase complement(4838217..4839347) Shewanella frigidimarina NCIMB 400 4280950 YP_752724.1 CDS Sfri_4060 NC_008345.1 4839489 4840355 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2053 transcriptional regulator, LysR family; transcriptional regulator, LysR family protein 4839489..4840355 Shewanella frigidimarina NCIMB 400 4280951 YP_752725.1 CDS Sfri_4061 NC_008345.1 4840407 4841021 R KEGG: vpa:VPA0793 DNA polymerase III epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(4840407..4841021) Shewanella frigidimarina NCIMB 400 4280952 YP_752726.1 CDS trmE NC_008345.1 4841032 4842393 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(4841032..4842393) Shewanella frigidimarina NCIMB 400 4280953 YP_752727.1 CDS Sfri_4063 NC_008345.1 4842475 4844103 R PFAM: 60 kDa inner membrane insertion protein; KEGG: son:SO0004 inner membrane protein, 60 kDa; 60 kDa inner membrane insertion protein complement(4842475..4844103) Shewanella frigidimarina NCIMB 400 4280954 YP_752728.1 CDS Sfri_4064 NC_008345.1 4844107 4844361 R PFAM: protein of unknown function DUF37; KEGG: son:SO0005 conserved hypothetical protein TIGR00278; hypothetical protein complement(4844107..4844361) Shewanella frigidimarina NCIMB 400 4280955 YP_752729.1 CDS rnpA NC_008345.1 4844328 4844684 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(4844328..4844684) Shewanella frigidimarina NCIMB 400 4280956 YP_752730.1 CDS rpmH NC_008345.1 4844697 4844834 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(4844697..4844834) Shewanella frigidimarina NCIMB 400 4280957 Sfri_R0005 tRNA Sfri_R0005 NC_008345.1 143295 143371 D tRNA-Ile 143295..143371 Shewanella frigidimarina NCIMB 400 4280963 Sfri_R0006 tRNA Sfri_R0006 NC_008345.1 143517 143592 D tRNA-Ala 143517..143592 Shewanella frigidimarina NCIMB 400 4280964 Sfri_R0009 tRNA Sfri_R0009 NC_008345.1 151770 151845 D tRNA-Thr 151770..151845 Shewanella frigidimarina NCIMB 400 4280967 Sfri_R0010 tRNA Sfri_R0010 NC_008345.1 151853 151937 D tRNA-Tyr 151853..151937 Shewanella frigidimarina NCIMB 400 4280968 Sfri_R0011 tRNA Sfri_R0011 NC_008345.1 151973 152046 D tRNA-Gly 151973..152046 Shewanella frigidimarina NCIMB 400 4280969 Sfri_R0012 tRNA Sfri_R0012 NC_008345.1 152056 152131 D tRNA-Ile 152056..152131 Shewanella frigidimarina NCIMB 400 4280970 Sfri_R0016 tRNA Sfri_R0016 NC_008345.1 199760 199836 D tRNA-Asp 199760..199836 Shewanella frigidimarina NCIMB 400 4280974 Sfri_R0018 tRNA Sfri_R0018 NC_008345.1 473790 473866 D tRNA-Arg 473790..473866 Shewanella frigidimarina NCIMB 400 4280976 Sfri_R0019 tRNA Sfri_R0019 NC_008345.1 473918 473993 D tRNA-His 473918..473993 Shewanella frigidimarina NCIMB 400 4280977 Sfri_R0020 tRNA Sfri_R0020 NC_008345.1 474015 474091 D tRNA-Pro 474015..474091 Shewanella frigidimarina NCIMB 400 4280978 Sfri_R0021 tRNA Sfri_R0021 NC_008345.1 474157 474233 D tRNA-Pro 474157..474233 Shewanella frigidimarina NCIMB 400 4280979 Sfri_R0022 tRNA Sfri_R0022 NC_008345.1 474297 474373 D tRNA-Pro 474297..474373 Shewanella frigidimarina NCIMB 400 4280980 Sfri_R0023 tRNA Sfri_R0023 NC_008345.1 575178 575262 D tRNA-Leu 575178..575262 Shewanella frigidimarina NCIMB 400 4280981 Sfri_R0025 tRNA Sfri_R0025 NC_008345.1 777366 777452 R tRNA-Leu complement(777366..777452) Shewanella frigidimarina NCIMB 400 4280983 Sfri_R0026 tRNA Sfri_R0026 NC_008345.1 777512 777587 R tRNA-Phe complement(777512..777587) Shewanella frigidimarina NCIMB 400 4280984 Sfri_R0033 tRNA Sfri_R0033 NC_008345.1 800254 800330 D tRNA-Trp 800254..800330 Shewanella frigidimarina NCIMB 400 4280991 Sfri_R0034 tRNA Sfri_R0034 NC_008345.1 843284 843360 D tRNA-Met 843284..843360 Shewanella frigidimarina NCIMB 400 4280992 Sfri_R0035 tRNA Sfri_R0035 NC_008345.1 843406 843490 D tRNA-Leu 843406..843490 Shewanella frigidimarina NCIMB 400 4280993 Sfri_R0036 tRNA Sfri_R0036 NC_008345.1 843536 843610 D tRNA-Gln 843536..843610 Shewanella frigidimarina NCIMB 400 4280994 Sfri_R0037 tRNA Sfri_R0037 NC_008345.1 843634 843708 D tRNA-Gln 843634..843708 Shewanella frigidimarina NCIMB 400 4280995 Sfri_R0038 tRNA Sfri_R0038 NC_008345.1 843714 843790 D tRNA-Met 843714..843790 Shewanella frigidimarina NCIMB 400 4280996 Sfri_R0039 tRNA Sfri_R0039 NC_008345.1 843884 843968 D tRNA-Leu 843884..843968 Shewanella frigidimarina NCIMB 400 4280997 Sfri_R0040 tRNA Sfri_R0040 NC_008345.1 844017 844091 D tRNA-Gln 844017..844091 Shewanella frigidimarina NCIMB 400 4280998 Sfri_R0041 tRNA Sfri_R0041 NC_008345.1 1153446 1153532 D tRNA-Leu 1153446..1153532 Shewanella frigidimarina NCIMB 400 4280999 Sfri_R0042 tRNA Sfri_R0042 NC_008345.1 1153614 1153689 D tRNA-Met 1153614..1153689 Shewanella frigidimarina NCIMB 400 4281000 Sfri_R0044 tRNA Sfri_R0044 NC_008345.1 1257132 1257223 D tRNA-Ser 1257132..1257223 Shewanella frigidimarina NCIMB 400 4281002 Sfri_R0045 tRNA Sfri_R0045 NC_008345.1 1257246 1257322 D tRNA-Arg 1257246..1257322 Shewanella frigidimarina NCIMB 400 4281003 Sfri_R0046 tRNA Sfri_R0046 NC_008345.1 1257350 1257426 D tRNA-Arg 1257350..1257426 Shewanella frigidimarina NCIMB 400 4281004 Sfri_R0047 tRNA Sfri_R0047 NC_008345.1 1257455 1257531 D tRNA-Arg 1257455..1257531 Shewanella frigidimarina NCIMB 400 4281005 Sfri_R0048 tRNA Sfri_R0048 NC_008345.1 1257540 1257631 D tRNA-Ser 1257540..1257631 Shewanella frigidimarina NCIMB 400 4281006 Sfri_R0049 tRNA Sfri_R0049 NC_008345.1 1257705 1257781 D tRNA-Arg 1257705..1257781 Shewanella frigidimarina NCIMB 400 4281007 Sfri_R0051 tRNA Sfri_R0051 NC_008345.1 1363511 1363586 D tRNA-Arg 1363511..1363586 Shewanella frigidimarina NCIMB 400 4281009 Sfri_R0053 tRNA Sfri_R0053 NC_008345.1 1715302 1715387 D tRNA-Leu 1715302..1715387 Shewanella frigidimarina NCIMB 400 4281011 Sfri_R0054 tRNA Sfri_R0054 NC_008345.1 1749039 1749114 D tRNA-Lys 1749039..1749114 Shewanella frigidimarina NCIMB 400 4281012 Sfri_R0055 tRNA Sfri_R0055 NC_008345.1 1749240 1749315 D tRNA-Lys 1749240..1749315 Shewanella frigidimarina NCIMB 400 4281013 Sfri_R0056 tRNA Sfri_R0056 NC_008345.1 1749441 1749516 D tRNA-Lys 1749441..1749516 Shewanella frigidimarina NCIMB 400 4281014 Sfri_R0057 tRNA Sfri_R0057 NC_008345.1 1749642 1749717 D tRNA-Lys 1749642..1749717 Shewanella frigidimarina NCIMB 400 4281015 Sfri_R0058 tRNA Sfri_R0058 NC_008345.1 1749843 1749918 D tRNA-Lys 1749843..1749918 Shewanella frigidimarina NCIMB 400 4281016 Sfri_R0059 tRNA Sfri_R0059 NC_008345.1 1750044 1750119 D tRNA-Lys 1750044..1750119 Shewanella frigidimarina NCIMB 400 4281017 Sfri_R0062 tRNA Sfri_R0062 NC_008345.1 1851303 1851379 D tRNA-Ile 1851303..1851379 Shewanella frigidimarina NCIMB 400 4281020 Sfri_R0063 tRNA Sfri_R0063 NC_008345.1 1851529 1851604 D tRNA-Ala 1851529..1851604 Shewanella frigidimarina NCIMB 400 4281021 Sfri_R0066 tRNA Sfri_R0066 NC_008345.1 2127062 2127151 D tRNA-Ser 2127062..2127151 Shewanella frigidimarina NCIMB 400 4281024 Sfri_R0067 tRNA Sfri_R0067 NC_008345.1 2222173 2222257 R tRNA-Tyr complement(2222173..2222257) Shewanella frigidimarina NCIMB 400 4281025 Sfri_R0068 tRNA Sfri_R0068 NC_008345.1 2222288 2222372 R tRNA-Tyr complement(2222288..2222372) Shewanella frigidimarina NCIMB 400 4281026 Sfri_R0069 tRNA Sfri_R0069 NC_008345.1 2222460 2222544 R tRNA-Tyr complement(2222460..2222544) Shewanella frigidimarina NCIMB 400 4281027 Sfri_R0070 tRNA Sfri_R0070 NC_008345.1 2306048 2306123 D tRNA-Gly 2306048..2306123 Shewanella frigidimarina NCIMB 400 4281028 Sfri_R0071 tRNA Sfri_R0071 NC_008345.1 2306166 2306239 D tRNA-Cys 2306166..2306239 Shewanella frigidimarina NCIMB 400 4281029 Sfri_R0072 tRNA Sfri_R0072 NC_008345.1 2306289 2306374 D tRNA-Leu 2306289..2306374 Shewanella frigidimarina NCIMB 400 4281030 Sfri_R0073 tRNA Sfri_R0073 NC_008345.1 2404762 2404838 D tRNA-Val 2404762..2404838 Shewanella frigidimarina NCIMB 400 4281031 Sfri_R0074 tRNA Sfri_R0074 NC_008345.1 2404887 2404963 D tRNA-Val 2404887..2404963 Shewanella frigidimarina NCIMB 400 4281032 Sfri_R0075 tRNA Sfri_R0075 NC_008345.1 2563286 2563375 R tRNA-Ser complement(2563286..2563375) Shewanella frigidimarina NCIMB 400 4281033 Sfri_R0076 tRNA Sfri_R0076 NC_008345.1 2596094 2596169 D tRNA-Asn 2596094..2596169 Shewanella frigidimarina NCIMB 400 4281034 Sfri_R0077 tRNA Sfri_R0077 NC_008345.1 2596203 2596278 D tRNA-Asn 2596203..2596278 Shewanella frigidimarina NCIMB 400 4281035 Sfri_R0078 tRNA Sfri_R0078 NC_008345.1 2596302 2596377 D tRNA-Asn 2596302..2596377 Shewanella frigidimarina NCIMB 400 4281036 Sfri_R0079 tRNA Sfri_R0079 NC_008345.1 2596407 2596482 D tRNA-Asn 2596407..2596482 Shewanella frigidimarina NCIMB 400 4281037 Sfri_R0080 tRNA Sfri_R0080 NC_008345.1 2596516 2596591 D tRNA-Asn 2596516..2596591 Shewanella frigidimarina NCIMB 400 4281038 Sfri_R0082 tRNA Sfri_R0082 NC_008345.1 2636128 2636204 R tRNA-Asp complement(2636128..2636204) Shewanella frigidimarina NCIMB 400 4281040 Sfri_R0083 tRNA Sfri_R0083 NC_008345.1 2636285 2636361 R tRNA-Asp complement(2636285..2636361) Shewanella frigidimarina NCIMB 400 4281041 Sfri_R0084 tRNA Sfri_R0084 NC_008345.1 2981097 2981173 D tRNA-Pro 2981097..2981173 Shewanella frigidimarina NCIMB 400 4281042 Sfri_R0085 tRNA Sfri_R0085 NC_008345.1 3107614 3107689 R tRNA-His complement(3107614..3107689) Shewanella frigidimarina NCIMB 400 4281043 Sfri_R0086 tRNA Sfri_R0086 NC_008345.1 3107698 3107774 R tRNA-Arg complement(3107698..3107774) Shewanella frigidimarina NCIMB 400 4281044 Sfri_R0087 tRNA Sfri_R0087 NC_008345.1 3107860 3107936 R tRNA-Pro complement(3107860..3107936) Shewanella frigidimarina NCIMB 400 4281045 Sfri_R0089 tRNA Sfri_R0089 NC_008345.1 3174166 3174251 R tRNA-Leu complement(3174166..3174251) Shewanella frigidimarina NCIMB 400 4281047 Sfri_R0090 tRNA Sfri_R0090 NC_008345.1 3174301 3174374 R tRNA-Cys complement(3174301..3174374) Shewanella frigidimarina NCIMB 400 4281048 Sfri_R0091 tRNA Sfri_R0091 NC_008345.1 3174416 3174491 R tRNA-Gly complement(3174416..3174491) Shewanella frigidimarina NCIMB 400 4281049 Sfri_R0092 tRNA Sfri_R0092 NC_008345.1 3187709 3187798 R tRNA-Ser complement(3187709..3187798) Shewanella frigidimarina NCIMB 400 4281050 Sfri_R0093 tRNA Sfri_R0093 NC_008345.1 3197419 3197494 D tRNA-Met 3197419..3197494 Shewanella frigidimarina NCIMB 400 4281051 Sfri_R0094 tRNA Sfri_R0094 NC_008345.1 3197540 3197615 D tRNA-Met 3197540..3197615 Shewanella frigidimarina NCIMB 400 4281052 Sfri_R0095 tRNA Sfri_R0095 NC_008345.1 3197661 3197736 D tRNA-Met 3197661..3197736 Shewanella frigidimarina NCIMB 400 4281053 Sfri_R0096 tRNA Sfri_R0096 NC_008345.1 3197783 3197858 D tRNA-Met 3197783..3197858 Shewanella frigidimarina NCIMB 400 4281054 Sfri_R0097 tRNA Sfri_R0097 NC_008345.1 3198189 3198264 D tRNA-Met 3198189..3198264 Shewanella frigidimarina NCIMB 400 4281055 Sfri_R0098 tRNA Sfri_R0098 NC_008345.1 3261000 3261075 R tRNA-Val complement(3261000..3261075) Shewanella frigidimarina NCIMB 400 4281056 Sfri_R0099 tRNA Sfri_R0099 NC_008345.1 3261110 3261185 R tRNA-Val complement(3261110..3261185) Shewanella frigidimarina NCIMB 400 4281057 Sfri_R0100 tRNA Sfri_R0100 NC_008345.1 3261213 3261288 R tRNA-Val complement(3261213..3261288) Shewanella frigidimarina NCIMB 400 4281058 Sfri_R0101 tRNA Sfri_R0101 NC_008345.1 3261330 3261405 R tRNA-Val complement(3261330..3261405) Shewanella frigidimarina NCIMB 400 4281059 Sfri_R0102 tRNA Sfri_R0102 NC_008345.1 3261438 3261513 R tRNA-Val complement(3261438..3261513) Shewanella frigidimarina NCIMB 400 4281060 Sfri_R0103 tRNA Sfri_R0103 NC_008345.1 3261553 3261628 R tRNA-Val complement(3261553..3261628) Shewanella frigidimarina NCIMB 400 4281061 Sfri_R0104 tRNA Sfri_R0104 NC_008345.1 3263399 3263474 D tRNA-Ala 3263399..3263474 Shewanella frigidimarina NCIMB 400 4281062 Sfri_R0105 tRNA Sfri_R0105 NC_008345.1 3263753 3263828 D tRNA-Glu 3263753..3263828 Shewanella frigidimarina NCIMB 400 4281063 Sfri_R0106 tRNA Sfri_R0106 NC_008345.1 3263961 3264036 D tRNA-Glu 3263961..3264036 Shewanella frigidimarina NCIMB 400 4281064 Sfri_R0107 tRNA Sfri_R0107 NC_008345.1 3264347 3264422 D tRNA-Glu 3264347..3264422 Shewanella frigidimarina NCIMB 400 4281065 Sfri_R0108 tRNA Sfri_R0108 NC_008345.1 3264555 3264630 D tRNA-Glu 3264555..3264630 Shewanella frigidimarina NCIMB 400 4281066 Sfri_R0109 tRNA Sfri_R0109 NC_008345.1 3264762 3264837 D tRNA-Glu 3264762..3264837 Shewanella frigidimarina NCIMB 400 4281067 Sfri_R0110 tRNA Sfri_R0110 NC_008345.1 3264970 3265045 D tRNA-Glu 3264970..3265045 Shewanella frigidimarina NCIMB 400 4281068 Sfri_R0111 tRNA Sfri_R0111 NC_008345.1 3265082 3265157 D tRNA-Ala 3265082..3265157 Shewanella frigidimarina NCIMB 400 4281069 Sfri_R0112 tRNA Sfri_R0112 NC_008345.1 3459744 3459819 D tRNA-Phe 3459744..3459819 Shewanella frigidimarina NCIMB 400 4281070 Sfri_R0113 tRNA Sfri_R0113 NC_008345.1 3459826 3459901 D tRNA-Thr 3459826..3459901 Shewanella frigidimarina NCIMB 400 4281071 Sfri_R0114 tRNA Sfri_R0114 NC_008345.1 3597796 3597872 D tRNA-Met 3597796..3597872 Shewanella frigidimarina NCIMB 400 4281072 Sfri_R0115 tRNA Sfri_R0115 NC_008345.1 3963093 3963168 R tRNA-Gly complement(3963093..3963168) Shewanella frigidimarina NCIMB 400 4281073 Sfri_R0116 tRNA Sfri_R0116 NC_008345.1 3963272 3963347 R tRNA-Gly complement(3963272..3963347) Shewanella frigidimarina NCIMB 400 4281074 Sfri_R0117 tRNA Sfri_R0117 NC_008345.1 3963441 3963516 R tRNA-Gly complement(3963441..3963516) Shewanella frigidimarina NCIMB 400 4281075 Sfri_R0118 tRNA Sfri_R0118 NC_008345.1 4291949 4292038 D tRNA-Ser 4291949..4292038 Shewanella frigidimarina NCIMB 400 4281076 Sfri_R0123 tRNA Sfri_R0123 NC_008345.1 4520094 4520169 R tRNA-Thr complement(4520094..4520169) Shewanella frigidimarina NCIMB 400 4281081 Sfri_R0126 tRNA Sfri_R0126 NC_008345.1 4523711 4523786 R tRNA-Ala complement(4523711..4523786) Shewanella frigidimarina NCIMB 400 4281084 Sfri_R0127 tRNA Sfri_R0127 NC_008345.1 4523920 4523996 R tRNA-Ile complement(4523920..4523996) Shewanella frigidimarina NCIMB 400 4281085 Sfri_R0130 tRNA Sfri_R0130 NC_008345.1 4799016 4799092 R tRNA-Asp complement(4799016..4799092) Shewanella frigidimarina NCIMB 400 4281088 Sfri_R0001 rRNA Sfri_R0001 NC_008345.1 42023 43557 D 16S ribosomal RNA 42023..43557 Shewanella frigidimarina NCIMB 400 4280959 Sfri_R0002 rRNA Sfri_R0002 NC_008345.1 43945 46860 D 23S ribosomal RNA 43945..46860 Shewanella frigidimarina NCIMB 400 4280960 Sfri_R0003 rRNA Sfri_R0003 NC_008345.1 47003 47124 D 5S ribosomal RNA 47003..47124 Shewanella frigidimarina NCIMB 400 4280961 Sfri_R0004 rRNA Sfri_R0004 NC_008345.1 141671 143205 D 16S ribosomal RNA 141671..143205 Shewanella frigidimarina NCIMB 400 4280962 Sfri_R0007 rRNA Sfri_R0007 NC_008345.1 143928 146843 D 23S ribosomal RNA 143928..146843 Shewanella frigidimarina NCIMB 400 4280965 Sfri_R0008 rRNA Sfri_R0008 NC_008345.1 146986 147107 D 5S ribosomal RNA 146986..147107 Shewanella frigidimarina NCIMB 400 4280966 Sfri_R0013 rRNA Sfri_R0013 NC_008345.1 194560 196094 D 16S ribosomal RNA 194560..196094 Shewanella frigidimarina NCIMB 400 4280971 Sfri_R0014 rRNA Sfri_R0014 NC_008345.1 196482 199397 D 23S ribosomal RNA 196482..199397 Shewanella frigidimarina NCIMB 400 4280972 Sfri_R0015 rRNA Sfri_R0015 NC_008345.1 199536 199657 D 5S ribosomal RNA 199536..199657 Shewanella frigidimarina NCIMB 400 4280973 Sfri_R0027 rRNA Sfri_R0027 NC_008345.1 785406 786940 D 16S ribosomal RNA 785406..786940 Shewanella frigidimarina NCIMB 400 4280985 Sfri_R0028 rRNA Sfri_R0028 NC_008345.1 787328 790242 D 23S ribosomal RNA 787328..790242 Shewanella frigidimarina NCIMB 400 4280986 Sfri_R0029 rRNA Sfri_R0029 NC_008345.1 790385 790506 D 5S ribosomal RNA 790385..790506 Shewanella frigidimarina NCIMB 400 4280987 Sfri_R0030 rRNA Sfri_R0030 NC_008345.1 793280 794814 D 16S ribosomal RNA 793280..794814 Shewanella frigidimarina NCIMB 400 4280988 Sfri_R0031 rRNA Sfri_R0031 NC_008345.1 795202 798117 D 23S ribosomal RNA 795202..798117 Shewanella frigidimarina NCIMB 400 4280989 Sfri_R0032 rRNA Sfri_R0032 NC_008345.1 798260 798381 D 5S ribosomal RNA 798260..798381 Shewanella frigidimarina NCIMB 400 4280990 Sfri_R0061 rRNA Sfri_R0061 NC_008345.1 1849550 1851084 D 16S ribosomal RNA 1849550..1851084 Shewanella frigidimarina NCIMB 400 4281019 Sfri_R0064 rRNA Sfri_R0064 NC_008345.1 1851941 1854856 D 23S ribosomal RNA 1851941..1854856 Shewanella frigidimarina NCIMB 400 4281022 Sfri_R0065 rRNA Sfri_R0065 NC_008345.1 1855054 1855175 D 5S ribosomal RNA 1855054..1855175 Shewanella frigidimarina NCIMB 400 4281023 Sfri_R0119 rRNA Sfri_R0119 NC_008345.1 4512241 4512362 R 5S ribosomal RNA complement(4512241..4512362) Shewanella frigidimarina NCIMB 400 4281077 Sfri_R0120 rRNA Sfri_R0120 NC_008345.1 4512505 4515420 R 23S ribosomal RNA complement(4512505..4515420) Shewanella frigidimarina NCIMB 400 4281078 Sfri_R0121 rRNA Sfri_R0121 NC_008345.1 4515808 4517342 R 16S ribosomal RNA complement(4515808..4517342) Shewanella frigidimarina NCIMB 400 4281079 Sfri_R0122 rRNA Sfri_R0122 NC_008345.1 4519940 4520061 R 5S ribosomal RNA complement(4519940..4520061) Shewanella frigidimarina NCIMB 400 4281080 Sfri_R0124 rRNA Sfri_R0124 NC_008345.1 4520196 4520317 R 5S ribosomal RNA complement(4520196..4520317) Shewanella frigidimarina NCIMB 400 4281082 Sfri_R0125 rRNA Sfri_R0125 NC_008345.1 4520460 4523375 R 23S ribosomal RNA complement(4520460..4523375) Shewanella frigidimarina NCIMB 400 4281083 Sfri_R0128 rRNA Sfri_R0128 NC_008345.1 4524086 4525620 R 16S ribosomal RNA complement(4524086..4525620) Shewanella frigidimarina NCIMB 400 4281086 Sfri_R0131 rRNA Sfri_R0131 NC_008345.1 4799195 4799316 R 5S ribosomal RNA complement(4799195..4799316) Shewanella frigidimarina NCIMB 400 4281089 Sfri_R0132 rRNA Sfri_R0132 NC_008345.1 4799459 4802374 R 23S ribosomal RNA complement(4799459..4802374) Shewanella frigidimarina NCIMB 400 4281090 Sfri_R0133 rRNA Sfri_R0133 NC_008345.1 4802761 4804295 R 16S ribosomal RNA complement(4802761..4804295) Shewanella frigidimarina NCIMB 400 4281091