-- dump date 20140620_063846 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001672236.1 167621942 5906050 81..1466 1 NC_010334.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1466 dnaA 5906050 dnaA Shewanella halifaxensis HAW-EB4 chromosomal replication initiation protein YP_001672236.1 81 D 458817 CDS YP_001672237.1 167621943 5906633 1486..2586 1 NC_010334.1 KEGG: slo:Shew_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 2586 5906633 Shal_0002 Shewanella halifaxensis HAW-EB4 DNA polymerase III subunit beta YP_001672237.1 1486 D 458817 CDS YP_001672238.1 167621944 5906755 2806..3903 1 NC_010334.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3903 recF 5906755 recF Shewanella halifaxensis HAW-EB4 recombination protein F YP_001672238.1 2806 D 458817 CDS YP_001672239.1 167621945 5906588 3881..6322 1 NC_010334.1 KEGG: shw:Sputw3181_0004 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 6322 5906588 Shal_0004 Shewanella halifaxensis HAW-EB4 DNA gyrase subunit B YP_001672239.1 3881 D 458817 CDS YP_001672240.1 167621946 5906589 6360..7463 1 NC_010334.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: shw:Sputw3181_0005 putative signal transduction protein; putative signal transduction protein 7463 5906589 Shal_0005 Shewanella halifaxensis HAW-EB4 putative signal transduction protein YP_001672240.1 6360 D 458817 CDS YP_001672241.1 167621947 5906173 complement(7531..9600) 1 NC_010334.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 9600 glyS 5906173 glyS Shewanella halifaxensis HAW-EB4 glycyl-tRNA synthetase subunit beta YP_001672241.1 7531 R 458817 CDS YP_001672242.1 167621948 5906174 complement(9612..10517) 1 NC_010334.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 10517 glyQ 5906174 glyQ Shewanella halifaxensis HAW-EB4 glycyl-tRNA synthetase subunit alpha YP_001672242.1 9612 R 458817 CDS YP_001672243.1 167621949 5905425 10636..11196 1 NC_010334.1 KEGG: slo:Shew_0011 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 11196 5905425 Shal_0008 Shewanella halifaxensis HAW-EB4 DNA-3-methyladenine glycosylase I YP_001672243.1 10636 D 458817 CDS YP_001672244.1 167621950 5905426 complement(11215..11880) 1 NC_010334.1 KEGG: slo:Shew_0012 hypothetical protein; hypothetical protein 11880 5905426 Shal_0009 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672244.1 11215 R 458817 CDS YP_001672245.1 167621951 5904891 complement(12121..15315) 1 NC_010334.1 PFAM: amidohydrolase; WD40 domain protein beta Propeller; KEGG: slo:Shew_0013 amidohydrolase; amidohydrolase 15315 5904891 Shal_0010 Shewanella halifaxensis HAW-EB4 amidohydrolase YP_001672245.1 12121 R 458817 CDS YP_001672246.1 167621952 5904892 complement(15903..16085) 1 NC_010334.1 hypothetical protein 16085 5904892 Shal_0011 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672246.1 15903 R 458817 CDS YP_001672247.1 167621953 5904501 complement(16120..16365) 1 NC_010334.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 16365 5904501 Shal_0012 Shewanella halifaxensis HAW-EB4 sulfur transfer protein SirA YP_001672247.1 16120 R 458817 CDS YP_001672248.1 167621954 5904502 complement(16512..16979) 1 NC_010334.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: vfi:VF1792 regulatory protein; ybaK/ebsC protein 16979 5904502 Shal_0013 Shewanella halifaxensis HAW-EB4 ybaK/ebsC protein YP_001672248.1 16512 R 458817 CDS YP_001672249.1 167621955 5903921 complement(17018..17479) 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB1061 hypothetical protein; N-acetyltransferase GCN5 17479 5903921 Shal_0014 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001672249.1 17018 R 458817 CDS YP_001672250.1 167621956 5903922 complement(17651..18814) 1 NC_010334.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 18814 fadA 5903922 fadA Shewanella halifaxensis HAW-EB4 3-ketoacyl-CoA thiolase YP_001672250.1 17651 R 458817 CDS YP_001672251.1 167621957 5904871 complement(18833..20986) 1 NC_010334.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 20986 fadB 5904871 fadB Shewanella halifaxensis HAW-EB4 multifunctional fatty acid oxidation complex subunit alpha YP_001672251.1 18833 R 458817 CDS YP_001672252.1 167621958 5904872 21349..22671 1 NC_010334.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 22671 5904872 Shal_0017 Shewanella halifaxensis HAW-EB4 proline dipeptidase YP_001672252.1 21349 D 458817 CDS YP_001672253.1 167621959 5905067 22740..23354 1 NC_010334.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: slo:Shew_0021 protein of unknown function UPF0029; hypothetical protein 23354 5905067 Shal_0018 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672253.1 22740 D 458817 CDS YP_001672254.1 167621960 5905068 23478..24935 1 NC_010334.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: slo:Shew_0022 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 24935 5905068 Shal_0019 Shewanella halifaxensis HAW-EB4 TrkH family potassium uptake protein YP_001672254.1 23478 D 458817 CDS YP_001672255.1 167621961 5905903 25075..25602 1 NC_010334.1 KEGG: slo:Shew_0023 protoporphyrinogen oxidase; protoporphyrinogen oxidase 25602 5905903 Shal_0020 Shewanella halifaxensis HAW-EB4 protoporphyrinogen oxidase YP_001672255.1 25075 D 458817 CDS YP_001672256.1 167621962 5905904 complement(25667..25972) 1 NC_010334.1 PFAM: regulatory protein ArsR; KEGG: shw:Sputw3181_0018 regulatory protein, ArsR; ArsR family transcriptional regulator 25972 5905904 Shal_0021 Shewanella halifaxensis HAW-EB4 ArsR family transcriptional regulator YP_001672256.1 25667 R 458817 CDS YP_001672257.1 167621963 5904106 26185..26724 1 NC_010334.1 KEGG: slo:Shew_0025 protoporphyrinogen oxidase; protoporphyrinogen oxidase 26724 5904106 Shal_0022 Shewanella halifaxensis HAW-EB4 protoporphyrinogen oxidase YP_001672257.1 26185 D 458817 CDS YP_001672258.1 167621964 5904107 complement(26783..28225) 1 NC_010334.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: slo:Shew_3740 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 28225 5904107 Shal_0023 Shewanella halifaxensis HAW-EB4 TrkH family potassium uptake protein YP_001672258.1 26783 R 458817 CDS YP_001672259.1 167621965 5905240 complement(28246..29655) 1 NC_010334.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 29655 trkA 5905240 trkA Shewanella halifaxensis HAW-EB4 potassium transporter peripheral membrane protein YP_001672259.1 28246 R 458817 CDS YP_001672260.1 167621966 5905241 complement(29663..30943) 1 NC_010334.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: slo:Shew_3738 sun protein; sun protein 30943 5905241 Shal_0025 Shewanella halifaxensis HAW-EB4 sun protein YP_001672260.1 29663 R 458817 CDS YP_001672261.1 167621967 5904521 complement(30950..31915) 1 NC_010334.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: shm:Shewmr7_0026 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 31915 5904521 Shal_0026 Shewanella halifaxensis HAW-EB4 methionyl-tRNA formyltransferase YP_001672261.1 30950 R 458817 CDS YP_001672262.1 167621968 5904522 complement(31920..32519) 1 NC_010334.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 32519 def 5904522 def Shewanella halifaxensis HAW-EB4 peptide deformylase YP_001672262.1 31920 R 458817 CDS YP_001672263.1 167621969 5904571 32569..33669 1 NC_010334.1 PFAM: Peptidoglycan-binding LysM; KEGG: slo:Shew_3735 peptidoglycan-binding LysM; peptidoglycan-binding LysM 33669 5904571 Shal_0028 Shewanella halifaxensis HAW-EB4 peptidoglycan-binding LysM YP_001672263.1 32569 D 458817 CDS YP_001672264.1 167621970 5904572 33823..34842 1 NC_010334.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: slo:Shew_3734 DNA protecting protein DprA; DNA protecting protein DprA 34842 5904572 Shal_0029 Shewanella halifaxensis HAW-EB4 DNA protecting protein DprA YP_001672264.1 33823 D 458817 CDS YP_001672265.1 167621971 5905346 34845..35318 1 NC_010334.1 PFAM: protein of unknown function DUF494; KEGG: shw:Sputw3181_0027 protein of unknown function DUF494; hypothetical protein 35318 5905346 Shal_0030 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672265.1 34845 D 458817 CDS YP_001672266.1 167621972 5905347 complement(35594..37366) 1 NC_010334.1 PFAM: Peptidase M9A collagenase domain protein; KEGG: slo:Shew_3732 microbial collagenase; collagenase 37366 5905347 Shal_0031 Shewanella halifaxensis HAW-EB4 collagenase YP_001672266.1 35594 R 458817 CDS YP_001672267.1 167621973 5905099 37503..38066 1 NC_010334.1 PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: sbm:Shew185_0031 DNA topoisomerase type IA zn finger domain protein; DNA topoisomerase type IA Zn finger domain-containing protein 38066 5905099 Shal_0032 Shewanella halifaxensis HAW-EB4 DNA topoisomerase type IA Zn finger domain-containing protein YP_001672267.1 37503 D 458817 CDS YP_001672268.1 167621974 5905100 38154..38717 1 NC_010334.1 PFAM: SUA5/yciO/yrdC domain; KEGG: sbm:Shew185_0032 SUA5/YciO/YrdC/YwlC family protein; SUA5/yciO/yrdC domain-containing protein 38717 5905100 Shal_0033 Shewanella halifaxensis HAW-EB4 SUA5/yciO/yrdC domain-containing protein YP_001672268.1 38154 D 458817 CDS YP_001672269.1 167621975 5904611 38739..39653 1 NC_010334.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 39653 5904611 Shal_0034 Shewanella halifaxensis HAW-EB4 coproporphyrinogen III oxidase YP_001672269.1 38739 D 458817 CDS YP_001672270.1 167621976 5904612 39744..40583 1 NC_010334.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: slo:Shew_3727 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 40583 5904612 Shal_0035 Shewanella halifaxensis HAW-EB4 shikimate 5-dehydrogenase YP_001672270.1 39744 D 458817 CDS YP_001672271.1 167621977 5905272 40614..40892 1 NC_010334.1 PFAM: protein of unknown function DUF1488; KEGG: shn:Shewana3_0044 protein of unknown function DUF1488; hypothetical protein 40892 5905272 Shal_0036 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672271.1 40614 D 458817 CDS YP_001672272.1 167621978 5905273 complement(40938..41495) 1 NC_010334.1 KEGG: sbm:Shew185_0037 carbonic anhydrase, family 3; carbonic anhydrase 41495 5905273 Shal_0037 Shewanella halifaxensis HAW-EB4 carbonic anhydrase YP_001672272.1 40938 R 458817 CDS YP_001672273.1 167621979 5904381 47722..47976 1 NC_010334.1 PFAM: protein of unknown function UPF0153; KEGG: slo:Shew_3811 protein of unknown function UPF0153; hypothetical protein 47976 5904381 Shal_0038 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672273.1 47722 D 458817 CDS YP_001672274.1 167621980 5904308 48028..48477 1 NC_010334.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: shn:Shewana3_0047 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 48477 5904308 Shal_0039 Shewanella halifaxensis HAW-EB4 BadM/Rrf2 family transcriptional regulator YP_001672274.1 48028 D 458817 CDS YP_001672275.1 167621981 5904777 complement(48463..49155) 1 NC_010334.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: sbl:Sbal_4335 protein of unknown function DUF610, YibQ; hypothetical protein 49155 5904777 Shal_0040 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672275.1 48463 R 458817 CDS YP_001672276.1 167621982 5904778 complement(49225..50430) 1 NC_010334.1 KEGG: slo:Shew_3808 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; SMART: PDZ/DHR/GLGF domain protein; carboxyl-terminal protease 50430 5904778 Shal_0041 Shewanella halifaxensis HAW-EB4 carboxyl-terminal protease YP_001672276.1 49225 R 458817 CDS YP_001672277.1 167621983 5904733 complement(50464..51597) 1 NC_010334.1 PFAM: peptidase M23B; KEGG: slo:Shew_3807 peptidase M23B; peptidase M23B 51597 5904733 Shal_0042 Shewanella halifaxensis HAW-EB4 peptidase M23B YP_001672277.1 50464 R 458817 CDS YP_001672278.1 167621984 5904734 complement(51870..53414) 1 NC_010334.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 53414 5904734 Shal_0043 Shewanella halifaxensis HAW-EB4 phosphoglyceromutase YP_001672278.1 51870 R 458817 CDS YP_001672279.1 167621985 5904919 53653..54087 1 NC_010334.1 PFAM: Rhodanese domain protein; KEGG: slo:Shew_3805 rhodanese domain protein; rhodanese domain-containing protein 54087 5904919 Shal_0044 Shewanella halifaxensis HAW-EB4 rhodanese domain-containing protein YP_001672279.1 53653 D 458817 CDS YP_001672280.1 167621986 5904920 54318..54803 1 NC_010334.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 54803 5904920 Shal_0045 Shewanella halifaxensis HAW-EB4 preprotein translocase subunit SecB YP_001672280.1 54318 D 458817 CDS YP_001672281.1 167621987 5904349 54808..55827 1 NC_010334.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 55827 gpsA 5904349 gpsA Shewanella halifaxensis HAW-EB4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001672281.1 54808 D 458817 CDS YP_001672282.1 167621988 5904350 56080..57264 1 NC_010334.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_3802 HI0933 family protein; hypothetical protein 57264 5904350 Shal_0047 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672282.1 56080 D 458817 CDS YP_001672283.1 167621989 5904964 57512..58129 1 NC_010334.1 KEGG: slo:Shew_3799 hypothetical protein; hypothetical protein 58129 5904964 Shal_0048 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672283.1 57512 D 458817 CDS YP_001672284.1 167621990 5904965 58290..59240 1 NC_010334.1 KEGG: cps:CPS_1250 conserved hypothetical protein; hypothetical protein 59240 5904965 Shal_0049 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672284.1 58290 D 458817 CDS YP_001672285.1 167621991 5905327 59237..60160 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_1249 ABC transporter, ATP-binding protein; ABC transporter-like protein 60160 5905327 Shal_0050 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001672285.1 59237 D 458817 CDS YP_001672286.1 167621992 5905328 60157..61302 1 NC_010334.1 PFAM: ABC-2 type transporter; KEGG: cps:CPS_1248 ABC transporter, permease protein; ABC-2 type transporter 61302 5905328 Shal_0051 Shewanella halifaxensis HAW-EB4 ABC-2 type transporter YP_001672286.1 60157 D 458817 CDS YP_001672287.1 167621993 5905157 61627..62097 1 NC_010334.1 PFAM: NLP/P60 protein; KEGG: sbm:Shew185_0058 NLP/P60 protein; NLP/P60 protein 62097 5905157 Shal_0052 Shewanella halifaxensis HAW-EB4 NLP/P60 protein YP_001672287.1 61627 D 458817 CDS YP_001672288.1 167621994 5905158 complement(62177..63109) 1 NC_010334.1 KEGG: vpa:VP1357 hypothetical protein; hypothetical protein 63109 5905158 Shal_0053 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672288.1 62177 R 458817 CDS YP_001672289.1 167621995 5904557 complement(63133..64458) 1 NC_010334.1 KEGG: bth:BT_1162 hypothetical protein; hypothetical protein 64458 5904557 Shal_0054 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672289.1 63133 R 458817 CDS YP_001672290.1 167621996 5904558 64809..65342 1 NC_010334.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 65342 mogA 5904558 mogA Shewanella halifaxensis HAW-EB4 molybdenum cofactor biosynthesis protein MogA YP_001672290.1 64809 D 458817 CDS YP_001672291.1 167621997 5905211 65381..65491 1 NC_010334.1 KEGG: saz:Sama_0068 molybdenum cofactor biosynthesis protein Mog; hypothetical protein 65491 5905211 Shal_0056 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672291.1 65381 D 458817 CDS YP_001672292.1 167621998 5905212 65530..65640 1 NC_010334.1 KEGG: saz:Sama_0068 molybdenum cofactor biosynthesis protein Mog; hypothetical protein 65640 5905212 Shal_0057 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672292.1 65530 D 458817 CDS YP_001672293.1 167621999 5903301 65679..65885 1 NC_010334.1 KEGG: saz:Sama_0068 molybdenum cofactor biosynthesis protein Mog; hypothetical protein 65885 5903301 Shal_0058 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672293.1 65679 D 458817 CDS YP_001672294.1 167622000 5903302 66300..67958 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: sde:Sde_0081 putative methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 67958 5903302 Shal_0059 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis sensory transducer YP_001672294.1 66300 D 458817 CDS YP_001672295.1 167622001 5904844 complement(68037..69173) 1 NC_010334.1 KEGG: slo:Shew_3782 ABC-2 type transporter; ABC-2 type transporter 69173 5904844 Shal_0060 Shewanella halifaxensis HAW-EB4 ABC-2 type transporter YP_001672295.1 68037 R 458817 CDS YP_001672296.1 167622002 5904845 complement(69199..69933) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3781 ABC transporter-related protein; ABC transporter-like protein 69933 5904845 Shal_0061 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001672296.1 69199 R 458817 CDS YP_001672297.1 167622003 5904883 complement(69944..71527) 1 NC_010334.1 PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: slo:Shew_3780 TAP domain protein; TAP domain-containing protein 71527 5904883 Shal_0062 Shewanella halifaxensis HAW-EB4 TAP domain-containing protein YP_001672297.1 69944 R 458817 CDS YP_001672298.1 167622004 5904884 72038..73834 1 NC_010334.1 PFAM: AMP-dependent synthetase and ligase; KEGG: slo:Shew_3776 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 73834 5904884 Shal_0063 Shewanella halifaxensis HAW-EB4 AMP-dependent synthetase and ligase YP_001672298.1 72038 D 458817 CDS YP_001672299.1 167622005 5904693 74073..74477 1 NC_010334.1 PFAM: thioesterase superfamily protein; KEGG: sfr:Sfri_3970 thioesterase superfamily protein; thioesterase superfamily protein 74477 5904693 Shal_0064 Shewanella halifaxensis HAW-EB4 thioesterase superfamily protein YP_001672299.1 74073 D 458817 CDS YP_001672300.1 167622006 5904694 complement(74528..74803) 1 NC_010334.1 KEGG: son:SO_0079 hypothetical protein; hypothetical protein 74803 5904694 Shal_0065 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672300.1 74528 R 458817 CDS YP_001672301.1 167622007 5904613 complement(74882..75310) 1 NC_010334.1 PFAM: thioesterase superfamily protein; KEGG: sdn:Sden_0074 thioesterase superfamily; thioesterase superfamily protein 75310 5904613 Shal_0066 Shewanella halifaxensis HAW-EB4 thioesterase superfamily protein YP_001672301.1 74882 R 458817 CDS YP_001672302.1 167622008 5904614 complement(75502..76179) 1 NC_010334.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: spc:Sputcn32_0069 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 76179 5904614 Shal_0067 Shewanella halifaxensis HAW-EB4 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_001672302.1 75502 R 458817 CDS YP_001672303.1 167622009 5904915 complement(76436..77485) 1 NC_010334.1 PFAM: Lytic transglycosylase catalytic; KEGG: ilo:IL0198 membrane-bound lytic murein transglycosylase C; lytic transglycosylase 77485 5904915 Shal_0068 Shewanella halifaxensis HAW-EB4 lytic transglycosylase YP_001672303.1 76436 R 458817 CDS YP_001672304.1 167622010 5904916 78106..79353 1 NC_010334.1 SMART: AAA ATPase; KEGG: vpa:VPA0800 hypothetical protein; ATPase AAA 79353 5904916 Shal_0069 Shewanella halifaxensis HAW-EB4 ATPase AAA YP_001672304.1 78106 D 458817 CDS YP_001672305.1 167622011 5905445 79346..80005 1 NC_010334.1 KEGG: vpa:VPA0799 hypothetical protein; hypothetical protein 80005 5905445 Shal_0070 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672305.1 79346 D 458817 CDS YP_001672306.1 167622012 5905446 complement(80432..81658) 1 NC_010334.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 81658 5905446 Shal_0071 Shewanella halifaxensis HAW-EB4 imidazolonepropionase YP_001672306.1 80432 R 458817 CDS YP_001672307.1 167622013 5906260 81834..82538 1 NC_010334.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: slo:Shew_3758 transcriptional regulator, histidine utilization repressor, GntR family; histidine utilization repressor 82538 5906260 Shal_0072 Shewanella halifaxensis HAW-EB4 histidine utilization repressor YP_001672307.1 81834 D 458817 CDS YP_001672308.1 167622014 5906261 82702..84366 1 NC_010334.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 84366 5906261 Shal_0073 Shewanella halifaxensis HAW-EB4 urocanate hydratase YP_001672308.1 82702 D 458817 CDS YP_001672309.1 167622015 5904565 84387..85919 1 NC_010334.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 85919 5904565 Shal_0074 Shewanella halifaxensis HAW-EB4 histidine ammonia-lyase YP_001672309.1 84387 D 458817 CDS YP_001672310.1 167622016 5904566 complement(85995..86402) 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cpf:CPF_1379 acetyltransferase, GNAT family; N-acetyltransferase GCN5 86402 5904566 Shal_0075 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001672310.1 85995 R 458817 CDS YP_001672311.1 167622017 5905323 86747..87673 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sal:Sala_2416 transcriptional regulator, LysR family; LysR family transcriptional regulator 87673 5905323 Shal_0076 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672311.1 86747 D 458817 CDS YP_001672312.1 167622018 5905324 complement(87756..88142) 1 NC_010334.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: vha:VIBHAR_03649 hypothetical protein; putative endoribonuclease L-PSP 88142 5905324 Shal_0077 Shewanella halifaxensis HAW-EB4 putative endoribonuclease L-PSP YP_001672312.1 87756 R 458817 CDS YP_001672313.1 167622019 5905193 complement(88218..89630) 1 NC_010334.1 PFAM: Na+/H+ antiporter NhaC; KEGG: dde:Dde_2580 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC 89630 5905193 Shal_0078 Shewanella halifaxensis HAW-EB4 Na+/H+ antiporter NhaC YP_001672313.1 88218 R 458817 CDS YP_001672314.1 167622020 5905194 complement(89748..90767) 1 NC_010334.1 KEGG: bbr:BB4545 D-cysteine desulfhydrase; 1-aminocyclopropane-1-carboxylate deaminase 90767 5905194 Shal_0079 Shewanella halifaxensis HAW-EB4 1-aminocyclopropane-1-carboxylate deaminase YP_001672314.1 89748 R 458817 CDS YP_001672315.1 167622021 5905319 complement(90860..91600) 1 NC_010334.1 PFAM: protein of unknown function DUF81; KEGG: btl:BALH_1459 membrane protein; hypothetical protein 91600 5905319 Shal_0080 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672315.1 90860 R 458817 CDS YP_001672316.1 167622022 5905320 complement(91842..92510) 1 NC_010334.1 KEGG: slo:Shew_3754 hypothetical protein; hypothetical protein 92510 5905320 Shal_0081 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672316.1 91842 R 458817 CDS YP_001672317.1 167622023 5905478 complement(92692..93087) 1 NC_010334.1 KEGG: vfi:VF1351 hypothetical protein; hypothetical protein 93087 5905478 Shal_0082 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672317.1 92692 R 458817 CDS YP_001672318.1 167622024 5905479 complement(93176..94327) 1 NC_010334.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO_A0164 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 94327 5905479 Shal_0083 Shewanella halifaxensis HAW-EB4 iron-containing alcohol dehydrogenase YP_001672318.1 93176 R 458817 CDS YP_001672319.1 167622025 5905676 complement(94707..95243) 1 NC_010334.1 KEGG: slo:Shew_3753 hypothetical protein; hypothetical protein 95243 5905676 Shal_0084 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672319.1 94707 R 458817 CDS YP_001672320.1 167622026 5905677 95438..96691 1 NC_010334.1 PFAM: MscS Mechanosensitive ion channel; KEGG: slo:Shew_3752 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 96691 5905677 Shal_0085 Shewanella halifaxensis HAW-EB4 mechanosensitive ion channel protein MscS YP_001672320.1 95438 D 458817 CDS YP_001672321.1 167622027 5905652 complement(96832..97458) 1 NC_010334.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: slo:Shew_3751 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 97458 5905652 Shal_0086 Shewanella halifaxensis HAW-EB4 lysine exporter protein LysE/YggA YP_001672321.1 96832 R 458817 CDS YP_001672322.1 167622028 5905653 complement(97559..98110) 1 NC_010334.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: slo:Shew_3750 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 98110 5905653 Shal_0087 Shewanella halifaxensis HAW-EB4 phospholipid/glycerol acyltransferase YP_001672322.1 97559 R 458817 CDS YP_001672323.1 167622029 5906860 98253..98675 1 NC_010334.1 KEGG: slo:Shew_3749 hypothetical protein; hypothetical protein 98675 5906860 Shal_0088 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672323.1 98253 D 458817 CDS YP_001672324.1 167622030 5906861 complement(98905..99672) 1 NC_010334.1 PFAM: protein of unknown function DUF833; KEGG: slo:Shew_3748 protein of unknown function DUF833; hypothetical protein 99672 5906861 Shal_0089 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672324.1 98905 R 458817 CDS YP_001672325.1 167622031 5906649 complement(99753..101381) 1 NC_010334.1 KEGG: slo:Shew_3747 hypothetical protein; hypothetical protein 101381 5906649 Shal_0090 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672325.1 99753 R 458817 CDS YP_001672326.1 167622032 5906650 101599..102195 1 NC_010334.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: slo:Shew_3746 multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein 102195 5906650 Shal_0091 Shewanella halifaxensis HAW-EB4 multiple antibiotic resistance (MarC)-like protein YP_001672326.1 101599 D 458817 CDS YP_001672327.1 167622033 5906373 102372..104537 1 NC_010334.1 PFAM: glycoside hydrolase family 37; KEGG: slo:Shew_3745 glycoside hydrolase, family 37; glycoside hydrolase family protein 104537 5906373 Shal_0092 Shewanella halifaxensis HAW-EB4 glycoside hydrolase family protein YP_001672327.1 102372 D 458817 CDS YP_001672328.1 167622034 5903978 104681..104983 1 NC_010334.1 KEGG: sdn:Sden_0093 hypothetical protein; hypothetical protein 104983 5903978 Shal_0093 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672328.1 104681 D 458817 CDS YP_001672329.1 167622035 5903979 104985..107789 1 NC_010334.1 PFAM: PKD domain containing protein; peptidase M6 immune inhibitor A; KEGG: slo:Shew_3744 peptidase M6, immune inhibitor A; peptidase M6 immune inhibitor A 107789 5903979 Shal_0094 Shewanella halifaxensis HAW-EB4 peptidase M6 immune inhibitor A YP_001672329.1 104985 D 458817 CDS YP_001672330.1 167622036 5904192 complement(107848..108411) 1 NC_010334.1 PFAM: Chorismate lyase; KEGG: sbl:Sbal_4229 chorismate lyase; chorismate lyase 108411 5904192 Shal_0095 Shewanella halifaxensis HAW-EB4 chorismate lyase YP_001672330.1 107848 R 458817 CDS YP_001672331.1 167622037 5904193 108565..108966 1 NC_010334.1 PFAM: flagellar basal body-associated protein FliL; KEGG: sfr:Sfri_0049 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein 108966 5904193 Shal_0096 Shewanella halifaxensis HAW-EB4 flagellar basal body-associated protein FliL-like protein YP_001672331.1 108565 D 458817 CDS YP_001672332.1 167622038 5903864 109024..110166 1 NC_010334.1 PFAM: protein of unknown function DUF890; KEGG: slo:Shew_3741 protein of unknown function DUF890; putative SAM-dependent methyltransferase 110166 5903864 Shal_0097 Shewanella halifaxensis HAW-EB4 putative SAM-dependent methyltransferase YP_001672332.1 109024 D 458817 CDS YP_001672333.1 167622039 5903860 complement(110298..111203) 1 NC_010334.1 KEGG: slo:Shew_0052 DNA binding domain, excisionase family; DNA-binding domain-containing protein 111203 5903860 Shal_0098 Shewanella halifaxensis HAW-EB4 DNA-binding domain-containing protein YP_001672333.1 110298 R 458817 CDS YP_001672334.1 167622040 5903861 complement(111251..112093) 1 NC_010334.1 PFAM: formate dehydrogenase subunit FdhD; KEGG: slo:Shew_0053 formate dehydrogenase, subunit FdhD; formate dehydrogenase subunit FdhD 112093 5903861 Shal_0099 Shewanella halifaxensis HAW-EB4 formate dehydrogenase subunit FdhD YP_001672334.1 111251 R 458817 CDS YP_001672335.1 167622041 5903573 112377..112844 1 NC_010334.1 KEGG: slo:Shew_0054 hypothetical protein; hypothetical protein 112844 5903573 Shal_0100 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672335.1 112377 D 458817 CDS YP_001672336.1 167622042 5903574 112841..113503 1 NC_010334.1 KEGG: sbl:Sbal_4132 hypothetical protein; hypothetical protein 113503 5903574 Shal_0101 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672336.1 112841 D 458817 CDS YP_001672337.1 167622043 5903759 113653..115332 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_0056 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 115332 5903759 Shal_0102 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001672337.1 113653 D 458817 CDS YP_001672338.1 167622044 5903508 115343..116017 1 NC_010334.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: slo:Shew_0057 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 116017 5903508 Shal_0103 Shewanella halifaxensis HAW-EB4 cytoplasmic chaperone TorD family protein YP_001672338.1 115343 D 458817 CDS YP_001672339.1 167622045 5903509 116192..116389 1 NC_010334.1 TIGRFAM: Formate dehydrogenase region TAT target; KEGG: shw:Sputw3181_3870 hypothetical protein; formate dehydrogenase region TAT target 116389 5903509 Shal_0104 Shewanella halifaxensis HAW-EB4 formate dehydrogenase region TAT target YP_001672339.1 116192 D 458817 CDS YP_001672340.1 167622046 5903721 116409..119258 1 NC_010334.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0059 molybdopterin oxidoreductase; molybdopterin oxidoreductase 119258 5903721 Shal_0105 Shewanella halifaxensis HAW-EB4 molybdopterin oxidoreductase YP_001672340.1 116409 D 458817 CDS YP_001672341.1 167622047 5903722 119285..119872 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3872 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 119872 5903722 Shal_0106 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001672341.1 119285 D 458817 CDS YP_001672342.1 167622048 5904202 119926..120933 1 NC_010334.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: slo:Shew_0061 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 120933 5904202 Shal_0107 Shewanella halifaxensis HAW-EB4 formate dehydrogenase subunit gamma YP_001672342.1 119926 D 458817 CDS YP_001672343.1 167622049 5904917 121639..121836 1 NC_010334.1 TIGRFAM: Formate dehydrogenase region TAT target; KEGG: slo:Shew_0062 hypothetical protein; formate dehydrogenase region TAT target 121836 5904917 Shal_0108 Shewanella halifaxensis HAW-EB4 formate dehydrogenase region TAT target YP_001672343.1 121639 D 458817 CDS YP_001672344.1 167622050 5904918 121855..124710 1 NC_010334.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0063 molybdopterin oxidoreductase; molybdopterin oxidoreductase 124710 5904918 Shal_0109 Shewanella halifaxensis HAW-EB4 molybdopterin oxidoreductase YP_001672344.1 121855 D 458817 CDS YP_001672345.1 167622051 5905355 124740..125309 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_0064 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 125309 5905355 Shal_0110 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001672345.1 124740 D 458817 CDS YP_001672346.1 167622052 5905356 125385..126365 1 NC_010334.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: sbm:Shew185_4112 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 126365 5905356 Shal_0111 Shewanella halifaxensis HAW-EB4 formate dehydrogenase subunit gamma YP_001672346.1 125385 D 458817 CDS YP_001672347.1 167622053 5905816 127390..127587 1 NC_010334.1 TIGRFAM: Formate dehydrogenase region TAT target; KEGG: slo:Shew_0062 hypothetical protein; formate dehydrogenase region TAT target 127587 5905816 Shal_0112 Shewanella halifaxensis HAW-EB4 formate dehydrogenase region TAT target YP_001672347.1 127390 D 458817 CDS YP_001672348.1 167622054 5905950 127606..130479 1 NC_010334.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: saz:Sama_3609 formate dehydrogenase, alpha subunit; molybdopterin oxidoreductase 130479 5905950 Shal_0113 Shewanella halifaxensis HAW-EB4 molybdopterin oxidoreductase YP_001672348.1 127606 D 458817 CDS YP_001672349.1 167622055 5905951 130509..131078 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: saz:Sama_3608 formate dehydrogenase, iron-sulfur subunit; 4Fe-4S ferredoxin 131078 5905951 Shal_0114 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001672349.1 130509 D 458817 CDS YP_001672350.1 167622056 5906020 131154..132137 1 NC_010334.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: sbm:Shew185_4112 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 132137 5906020 Shal_0115 Shewanella halifaxensis HAW-EB4 formate dehydrogenase subunit gamma YP_001672350.1 131154 D 458817 CDS YP_001672351.1 167622057 5906021 132396..133724 1 NC_010334.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 133724 5906021 Shal_0116 Shewanella halifaxensis HAW-EB4 coproporphyrinogen III oxidase YP_001672351.1 132396 D 458817 CDS YP_001672352.1 167622058 5906141 133910..134752 1 NC_010334.1 PFAM: PfkB domain protein; KEGG: sbl:Sbal_0278 PfkB domain protein; ribokinase-like domain-containing protein 134752 5906141 Shal_0117 Shewanella halifaxensis HAW-EB4 ribokinase-like domain-containing protein YP_001672352.1 133910 D 458817 CDS YP_001672353.1 167622059 5903906 134992..136449 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: she:Shewmr4_0268 diguanylate cyclase; diguanylate cyclase 136449 5903906 Shal_0118 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001672353.1 134992 D 458817 CDS YP_001672354.1 167622060 5903907 136560..137258 1 NC_010334.1 PFAM: MOSC domain containing protein; KEGG: shw:Sputw3181_0239 MOSC domain containing protein; MOSC domain-containing protein 137258 5903907 Shal_0119 Shewanella halifaxensis HAW-EB4 MOSC domain-containing protein YP_001672354.1 136560 D 458817 CDS YP_001672355.1 167622061 5903777 137290..137637 1 NC_010334.1 KEGG: slo:Shew_0084 hypothetical protein; hypothetical protein 137637 5903777 Shal_0120 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672355.1 137290 D 458817 CDS YP_001672356.1 167622062 5903778 complement(137736..139385) 1 NC_010334.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: slo:Shew_0086 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 139385 5903778 Shal_0121 Shewanella halifaxensis HAW-EB4 electron-transferring-flavoprotein dehydrogenase YP_001672356.1 137736 R 458817 CDS YP_001672357.1 167622063 5904046 139766..140746 1 NC_010334.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 140746 moaA 5904046 moaA Shewanella halifaxensis HAW-EB4 molybdenum cofactor biosynthesis protein A YP_001672357.1 139766 D 458817 CDS YP_001672358.1 167622064 5904077 140829..141353 1 NC_010334.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: slo:Shew_0088 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B 141353 5904077 Shal_0123 Shewanella halifaxensis HAW-EB4 molybdenum cofactor biosynthesis protein B YP_001672358.1 140829 D 458817 CDS YP_001672359.1 167622065 5904078 141427..141903 1 NC_010334.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 141903 moaC 5904078 moaC Shewanella halifaxensis HAW-EB4 molybdenum cofactor biosynthesis protein MoaC YP_001672359.1 141427 D 458817 CDS YP_001672360.1 167622066 5904091 141912..142163 1 NC_010334.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: shn:Shewana3_0276 molybdopterin converting factor, subunit 1; molybdopterin converting factor subunit 1 142163 5904091 Shal_0125 Shewanella halifaxensis HAW-EB4 molybdopterin converting factor subunit 1 YP_001672360.1 141912 D 458817 CDS YP_001672361.1 167622067 5904092 142165..142617 1 NC_010334.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: she:Shewmr4_0276 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE protein 142617 5904092 Shal_0126 Shewanella halifaxensis HAW-EB4 molybdopterin biosynthesis MoaE protein YP_001672361.1 142165 D 458817 CDS YP_001672362.1 167622068 5904151 142648..143427 1 NC_010334.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: slo:Shew_0092 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 143427 5904151 Shal_0127 Shewanella halifaxensis HAW-EB4 molybdenum ABC transporter periplasmic molybdate-binding protein YP_001672362.1 142648 D 458817 CDS YP_001672363.1 167622069 5904152 143427..144107 1 NC_010334.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_0093 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit 144107 5904152 Shal_0128 Shewanella halifaxensis HAW-EB4 molybdate ABC transporter inner membrane subunit YP_001672363.1 143427 D 458817 CDS YP_001672364.1 167622070 5904153 144088..145203 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0094 ABC transporter-related protein; ABC transporter-like protein 145203 5904153 Shal_0129 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001672364.1 144088 D 458817 CDS YP_001672365.1 167622071 5905195 145325..145675 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: slo:Shew_0095 conserved hypothetical protein 156; hypothetical protein 145675 5905195 Shal_0130 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672365.1 145325 D 458817 CDS YP_001672366.1 167622072 5905196 145720..146241 1 NC_010334.1 KEGG: shw:Sputw3181_0250 hypothetical protein; hypothetical protein 146241 5905196 Shal_0131 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672366.1 145720 D 458817 CDS YP_001672367.1 167622073 5903369 146245..146922 1 NC_010334.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_0097 two component transcriptional regulator, winged helix family; two component transcriptional regulator 146922 5903369 Shal_0132 Shewanella halifaxensis HAW-EB4 two component transcriptional regulator YP_001672367.1 146245 D 458817 CDS YP_001672368.1 167622074 5904532 146891..148228 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_0098 integral membrane sensor signal transduction histidine kinase; histidine kinase 148228 5904532 Shal_0133 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001672368.1 146891 D 458817 CDS YP_001672369.1 167622075 5904533 148280..148969 1 NC_010334.1 TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: slo:Shew_0099 pseudouridine synthase Rlu family protein, TIGR01621; pseudouridine synthase Rlu family protein 148969 5904533 Shal_0134 Shewanella halifaxensis HAW-EB4 pseudouridine synthase Rlu family protein YP_001672369.1 148280 D 458817 CDS YP_001672370.1 167622076 5906346 149164..149643 1 NC_010334.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 149643 coaD 5906346 coaD Shewanella halifaxensis HAW-EB4 phosphopantetheine adenylyltransferase YP_001672370.1 149164 D 458817 CDS YP_001672371.1 167622077 5906347 149650..151149 1 NC_010334.1 KEGG: sfr:Sfri_3925 hypothetical protein; hypothetical protein 151149 5906347 Shal_0136 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672371.1 149650 D 458817 CDS YP_001672372.1 167622078 5906417 151495..152226 1 NC_010334.1 PFAM: glycosyl transferase family 2; KEGG: shm:Shewmr7_3977 glycosyl transferase, family 2; glycosyl transferase family protein 152226 5906417 Shal_0137 Shewanella halifaxensis HAW-EB4 glycosyl transferase family protein YP_001672372.1 151495 D 458817 CDS YP_001672373.1 167622079 5906484 152229..152894 1 NC_010334.1 PFAM: SNARE associated Golgi protein; KEGG: shm:Shewmr7_3976 hypothetical protein; hypothetical protein 152894 5906484 Shal_0138 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672373.1 152229 D 458817 CDS YP_001672374.1 167622080 5906485 152949..154676 1 NC_010334.1 PFAM: glycosyl transferase family 39; KEGG: shw:Sputw3181_0066 glycosyl transferase, family 39; glycosyl transferase family protein 154676 5906485 Shal_0139 Shewanella halifaxensis HAW-EB4 glycosyl transferase family protein YP_001672374.1 152949 D 458817 CDS YP_001672375.1 167622081 5906958 complement(155936..156751) 1 NC_010334.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 156751 5906958 Shal_0140 Shewanella halifaxensis HAW-EB4 formamidopyrimidine-DNA glycosylase YP_001672375.1 155936 R 458817 CDS YP_001672376.1 167622082 5906959 complement(156848..157300) 1 NC_010334.1 KEGG: shw:Sputw3181_0068 hypothetical protein; hypothetical protein 157300 5906959 Shal_0141 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672376.1 156848 R 458817 CDS YP_001672377.1 167622083 5905661 158420..160450 1 NC_010334.1 PFAM: Ig domain protein group 1 domain protein; KEGG: sdn:Sden_2330 Ig-like, group 1; Ig domain-containing protein 160450 5905661 Shal_0142 Shewanella halifaxensis HAW-EB4 Ig domain-containing protein YP_001672377.1 158420 D 458817 CDS YP_001672378.1 167622084 5905746 161411..162193 1 NC_010334.1 KEGG: vvu:VV1_2522 prophage antirepressor; hypothetical protein 162193 5905746 Shal_0143 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672378.1 161411 D 458817 CDS YP_001672379.1 167622085 5905747 complement(162347..163333) 1 NC_010334.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 163333 5905747 Shal_0144 Shewanella halifaxensis HAW-EB4 molybdenum cofactor biosynthesis protein A YP_001672379.1 162347 R 458817 CDS YP_001672380.1 167622086 5905784 complement(163354..165153) 1 NC_010334.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin binding domain; molybdopterin-guanine dinucleotide biosynthesis MobB region; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: slo:Shew_3687 molybdopterin-guanine dinucleotide biosynthesis protein B; putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA 165153 5905784 Shal_0145 Shewanella halifaxensis HAW-EB4 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA YP_001672380.1 163354 R 458817 CDS YP_001672381.1 167622087 5905785 complement(165162..165764) 1 NC_010334.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: slo:Shew_3686 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 165764 5905785 Shal_0146 Shewanella halifaxensis HAW-EB4 molybdopterin-guanine dinucleotide biosynthesis protein A YP_001672381.1 165162 R 458817 CDS YP_001672382.1 167622088 5905878 complement(165815..166561) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3685 ABC transporter-related protein; ABC transporter-like protein 166561 5905878 Shal_0147 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001672382.1 165815 R 458817 CDS YP_001672383.1 167622089 5904435 complement(166567..167274) 1 NC_010334.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_3684 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 167274 5904435 Shal_0148 Shewanella halifaxensis HAW-EB4 binding-protein-dependent transport system inner membrane protein YP_001672383.1 166567 R 458817 CDS YP_001672384.1 167622090 5904436 complement(167271..168083) 1 NC_010334.1 PFAM: extracellular solute-binding protein family 1; KEGG: slo:Shew_3683 extracellular solute-binding protein, family 1; extracellular solute-binding protein 168083 5904436 Shal_0149 Shewanella halifaxensis HAW-EB4 extracellular solute-binding protein YP_001672384.1 167271 R 458817 CDS YP_001672385.1 167622091 5903345 168374..169744 1 NC_010334.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: slo:Shew_3682 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma54 specific transcriptional regulator 169744 5903345 Shal_0150 Shewanella halifaxensis HAW-EB4 Fis family two component sigma54 specific transcriptional regulator YP_001672385.1 168374 D 458817 CDS YP_001672386.1 167622092 5903346 169773..171911 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_3681 integral membrane sensor signal transduction histidine kinase; histidine kinase 171911 5903346 Shal_0151 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001672386.1 169773 D 458817 CDS YP_001672387.1 167622093 5903355 complement(172529..172987) 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shn:Shewana3_4074 acetyltransferase, GNAT family; N-acetyltransferase GCN5 172987 5903355 Shal_0152 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001672387.1 172529 R 458817 CDS YP_001672388.1 167622094 5903349 complement(173116..173775) 1 NC_010334.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: sbm:Shew185_4313 hypothetical protein; hypothetical protein 173775 5903349 Shal_0153 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672388.1 173116 R 458817 CDS YP_001672389.1 167622095 5903350 complement(174080..179365) 1 NC_010334.1 PFAM: GLUG domain protein; KEGG: hch:HCH_03195 RTX toxins and related Ca2+-binding protein; GLUG domain-containing protein 179365 5903350 Shal_0154 Shewanella halifaxensis HAW-EB4 GLUG domain-containing protein YP_001672389.1 174080 R 458817 CDS YP_001672390.1 167622096 5903361 complement(180017..181375) 1 NC_010334.1 TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: slo:Shew_3677 isochorismate synthase; isochorismate synthase 181375 5903361 Shal_0155 Shewanella halifaxensis HAW-EB4 isochorismate synthase YP_001672390.1 180017 R 458817 CDS YP_001672391.1 167622097 5903362 181815..183764 1 NC_010334.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: she:Shewmr4_3867 TonB-dependent receptor, plug; TonB-dependent receptor plug 183764 5903362 Shal_0156 Shewanella halifaxensis HAW-EB4 TonB-dependent receptor plug YP_001672391.1 181815 D 458817 CDS YP_001672392.1 167622098 5903360 183782..185233 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO_4712 ABC transporter, ATP-binding protein, putative; ABC transporter-like protein 185233 5903360 Shal_0157 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001672392.1 183782 D 458817 CDS YP_001672393.1 167622099 5903374 185223..185915 1 NC_010334.1 PFAM: cobalt transport protein; KEGG: sbl:Sbal_0091 cobalt transport protein; cobalt transport protein 185915 5903374 Shal_0158 Shewanella halifaxensis HAW-EB4 cobalt transport protein YP_001672393.1 185223 D 458817 CDS YP_001672394.1 167622100 5903375 185915..186460 1 NC_010334.1 KEGG: slo:Shew_3673 hypothetical protein; hypothetical protein 186460 5903375 Shal_0159 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672394.1 185915 D 458817 CDS YP_001672395.1 167622101 5905165 186509..187270 1 NC_010334.1 KEGG: slo:Shew_3672 hypothetical protein; hypothetical protein 187270 5905165 Shal_0160 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672395.1 186509 D 458817 CDS YP_001672396.1 167622102 5905166 187298..187513 1 NC_010334.1 KEGG: shm:Shewmr7_3955 hypothetical protein; hypothetical protein 187513 5905166 Shal_0161 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672396.1 187298 D 458817 CDS YP_001672397.1 167622103 5905118 187755..188939 1 NC_010334.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: son:SO_4711 HD domain protein; metal dependent phosphohydrolase 188939 5905118 Shal_0162 Shewanella halifaxensis HAW-EB4 metal dependent phosphohydrolase YP_001672397.1 187755 D 458817 CDS YP_001672398.1 167622104 5905006 189172..189837 1 NC_010334.1 PFAM: ThiJ/PfpI domain protein; KEGG: slo:Shew_3669 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 189837 5905006 Shal_0163 Shewanella halifaxensis HAW-EB4 ThiJ/PfpI domain-containing protein YP_001672398.1 189172 D 458817 CDS YP_001672399.1 167622105 5905007 complement(190425..191363) 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: sbm:Shew185_4296 conserved hypothetical protein 698; hypothetical protein 191363 5905007 Shal_0164 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672399.1 190425 R 458817 CDS YP_001672400.1 167622106 5904265 complement(191823..193001) 1 NC_010334.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 193001 5904265 Shal_0165 Shewanella halifaxensis HAW-EB4 diaminopropionate ammonia-lyase YP_001672400.1 191823 R 458817 CDS YP_001672401.1 167622107 5904266 complement(193088..193471) 1 NC_010334.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: vha:VIBHAR_02784 hypothetical protein; putative endoribonuclease L-PSP 193471 5904266 Shal_0166 Shewanella halifaxensis HAW-EB4 putative endoribonuclease L-PSP YP_001672401.1 193088 R 458817 CDS YP_001672402.1 167622108 5904331 complement(193492..194172) 1 NC_010334.1 PFAM: YheO domain protein; KEGG: sfr:Sfri_0689 YheO domain protein; YheO domain-containing protein 194172 5904331 Shal_0167 Shewanella halifaxensis HAW-EB4 YheO domain-containing protein YP_001672402.1 193492 R 458817 CDS YP_001672403.1 167622109 5904745 194513..195679 1 NC_010334.1 PFAM: creatinase; peptidase M24; KEGG: pin:Ping_2026 peptidase M24; peptidase M24 195679 5904745 Shal_0168 Shewanella halifaxensis HAW-EB4 peptidase M24 YP_001672403.1 194513 D 458817 CDS YP_001672404.1 167622110 5904746 195745..196524 1 NC_010334.1 PFAM: Asp/Glu racemase; KEGG: pin:Ping_2031 Asp/Glu racemase; Asp/Glu racemase 196524 5904746 Shal_0169 Shewanella halifaxensis HAW-EB4 Asp/Glu racemase YP_001672404.1 195745 D 458817 CDS YP_001672405.1 167622111 5904765 196564..197550 1 NC_010334.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rci:RCIX1169 hypothetical protein; hypothetical protein 197550 5904765 Shal_0170 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672405.1 196564 D 458817 CDS YP_001672406.1 167622112 5904766 197633..198787 1 NC_010334.1 KEGG: pin:Ping_2027 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; amidohydrolase 198787 5904766 Shal_0171 Shewanella halifaxensis HAW-EB4 amidohydrolase YP_001672406.1 197633 D 458817 CDS YP_001672407.1 167622113 5904344 complement(199692..200906) 1 NC_010334.1 KEGG: shw:Sputw3181_0952 hypothetical protein; hypothetical protein 200906 5904344 Shal_0172 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672407.1 199692 R 458817 CDS YP_001672408.1 167622114 5903412 201090..202364 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_03999 nitrate/nitrite transporter; major facilitator transporter 202364 5903412 Shal_0173 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001672408.1 201090 D 458817 CDS YP_001672409.1 167622115 5903413 complement(202530..203171) 1 NC_010334.1 PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: pau:PA14_13730 putative nitrate/nitrite response regulator; NarL; two component LuxR family transcriptional regulator 203171 5903413 Shal_0174 Shewanella halifaxensis HAW-EB4 two component LuxR family transcriptional regulator YP_001672409.1 202530 R 458817 CDS YP_001672410.1 167622116 5903351 complement(203201..204961) 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: psa:PST_0892 two-component sensor NarX; histidine kinase 204961 5903351 Shal_0175 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001672410.1 203201 R 458817 CDS YP_001672411.1 167622117 5903352 205341..206945 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_04020 nitrate/nitrite transporter; major facilitator transporter 206945 5903352 Shal_0176 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001672411.1 205341 D 458817 CDS YP_001672412.1 167622118 5903453 207064..210828 1 NC_010334.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: psa:PST_0896 respiratory nitrate reductase alpha chain; nitrate reductase subunit alpha 210828 5903453 Shal_0177 Shewanella halifaxensis HAW-EB4 nitrate reductase subunit alpha YP_001672412.1 207064 D 458817 CDS YP_001672413.1 167622119 5903394 210840..212378 1 NC_010334.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: pap:PSPA7_1235 nitrate reductase, beta subunit; nitrate reductase subunit beta 212378 5903394 Shal_0178 Shewanella halifaxensis HAW-EB4 nitrate reductase subunit beta YP_001672413.1 210840 D 458817 CDS YP_001672414.1 167622120 5903395 212383..213117 1 NC_010334.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: maq:Maqu_3084 nitrate reductase molybdenum cofactor assembly chaperone; nitrate reductase molybdenum cofactor assembly chaperone 213117 5903395 Shal_0179 Shewanella halifaxensis HAW-EB4 nitrate reductase molybdenum cofactor assembly chaperone YP_001672414.1 212383 D 458817 CDS YP_001672415.1 167622121 5902996 213128..213805 1 NC_010334.1 KEGG: psa:PST_0899 respiratory nitrate reductase gamma chain; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 213805 5902996 Shal_0180 Shewanella halifaxensis HAW-EB4 respiratory nitrate reductase subunit gamma YP_001672415.1 213128 D 458817 CDS YP_001672416.1 167622122 5902997 213950..214765 1 NC_010334.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: psa:PST_0900 probable peptidyl-prolyl cis-trans isomerase, PpiC-type; PpiC-type peptidyl-prolyl cis-trans isomerase 214765 5902997 Shal_0181 Shewanella halifaxensis HAW-EB4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001672416.1 213950 D 458817 CDS YP_001672417.1 167622123 5904165 complement(214812..215309) 1 NC_010334.1 PFAM: HPP family protein?; KEGG: tcx:Tcr_1929 HPP; HPP family protein 215309 5904165 Shal_0182 Shewanella halifaxensis HAW-EB4 HPP family protein YP_001672417.1 214812 R 458817 CDS YP_001672418.1 167622124 5903282 complement(215586..215996) 1 NC_010334.1 KEGG: psa:PST_3997 ribonucleotide reductase, alpha subunit; ribonucleotide reductase subunit alpha 215996 5903282 Shal_0183 Shewanella halifaxensis HAW-EB4 ribonucleotide reductase subunit alpha YP_001672418.1 215586 R 458817 CDS YP_001672419.1 167622125 5903283 complement(216010..217821) 1 NC_010334.1 PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: hch:HCH_04002 serine/threonine protein kinase; protein serine/threonine phosphatase 217821 5903283 Shal_0184 Shewanella halifaxensis HAW-EB4 protein serine/threonine phosphatase YP_001672419.1 216010 R 458817 CDS YP_001672420.1 167622126 5904952 complement(217811..219286) 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_04000 nitrate/nitrite transporter; major facilitator transporter 219286 5904952 Shal_0185 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001672420.1 217811 R 458817 CDS YP_001672421.1 167622127 5904953 complement(219584..220477) 1 NC_010334.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: ppr:PBPRB1503 hypothetical membrane protein; transporter DMT superfamily protein 220477 5904953 Shal_0186 Shewanella halifaxensis HAW-EB4 transporter DMT superfamily protein YP_001672421.1 219584 R 458817 CDS YP_001672422.1 167622128 5904901 complement(220549..220716) 1 NC_010334.1 KEGG: pin:Ping_2027 amidohydrolase; amidohydrolase 220716 5904901 Shal_0187 Shewanella halifaxensis HAW-EB4 amidohydrolase YP_001672422.1 220549 R 458817 CDS YP_001672423.1 167622129 5904904 221091..222191 1 NC_010334.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: vha:VIBHAR_05496 hypothetical protein; NADH:flavin oxidoreductase 222191 5904904 Shal_0188 Shewanella halifaxensis HAW-EB4 NADH:flavin oxidoreductase YP_001672423.1 221091 D 458817 CDS YP_001672424.1 167622130 5904905 222693..224645 1 NC_010334.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vfi:VF1121 BCCT family transporter; choline/carnitine/betaine transporter 224645 5904905 Shal_0189 Shewanella halifaxensis HAW-EB4 choline/carnitine/betaine transporter YP_001672424.1 222693 D 458817 CDS YP_001672425.1 167622131 5905061 complement(224775..226130) 1 NC_010334.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 226130 5905061 Shal_0190 Shewanella halifaxensis HAW-EB4 glutathione reductase YP_001672425.1 224775 R 458817 CDS YP_001672426.1 167622132 5905062 complement(226461..226937) 1 NC_010334.1 KEGG: sbl:Sbal_0122 hypothetical protein; hypothetical protein 226937 5905062 Shal_0191 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672426.1 226461 R 458817 CDS YP_001672427.1 167622133 5905017 complement(227145..227927) 1 NC_010334.1 KEGG: slo:Shew_3658 hypothetical protein; hypothetical protein 227927 5905017 Shal_0192 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672427.1 227145 R 458817 CDS YP_001672428.1 167622134 5905161 228203..230242 1 NC_010334.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: slo:Shew_3657 oligopeptidase A; oligopeptidase A 230242 5905161 Shal_0193 Shewanella halifaxensis HAW-EB4 oligopeptidase A YP_001672428.1 228203 D 458817 CDS YP_001672429.1 167622135 5905162 230394..230966 1 NC_010334.1 KEGG: shm:Shewmr7_3934 hypothetical protein; hypothetical protein 230966 5905162 Shal_0194 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672429.1 230394 D 458817 CDS YP_001672430.1 167622136 5905204 complement(230963..231610) 1 NC_010334.1 PFAM: Glutathione S-transferase domain; KEGG: shw:Sputw3181_3976 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 231610 5905204 Shal_0195 Shewanella halifaxensis HAW-EB4 glutathione S-transferase domain-containing protein YP_001672430.1 230963 R 458817 CDS YP_001672431.1 167622137 5905205 231805..232494 1 NC_010334.1 KEGG: shn:Shewana3_4048 conserved hypothetical 3-methyladenine DNA glycosylase; 3-methyladenine DNA glycosylase 232494 5905205 Shal_0196 Shewanella halifaxensis HAW-EB4 3-methyladenine DNA glycosylase YP_001672431.1 231805 D 458817 CDS YP_001672432.1 167622138 5905304 232852..234003 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_0031 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 234003 5905304 Shal_0197 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001672432.1 232852 D 458817 CDS YP_001672433.1 167622139 5905423 234013..237171 1 NC_010334.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: slo:Shew_0032 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 237171 5905423 Shal_0198 Shewanella halifaxensis HAW-EB4 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001672433.1 234013 D 458817 CDS YP_001672434.1 167622140 5905424 complement(237548..238105) 1 NC_010334.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: ypi:YpsIP31758_1434 phosphodiesterase, MJ0936 family; phosphodiesterase 238105 5905424 Shal_0199 Shewanella halifaxensis HAW-EB4 phosphodiesterase YP_001672434.1 237548 R 458817 CDS YP_001672435.1 167622141 5905412 238336..239733 1 NC_010334.1 PFAM: permease; KEGG: mbb:BCG_2984 putative integral membrane protein; permease 239733 5905412 Shal_0200 Shewanella halifaxensis HAW-EB4 permease YP_001672435.1 238336 D 458817 CDS YP_001672436.1 167622142 5905413 complement(240034..241653) 1 NC_010334.1 PFAM: AbgT putative transporter; KEGG: slo:Shew_3654 AbgT putative transporter; putative transporter AbgT 241653 5905413 Shal_0201 Shewanella halifaxensis HAW-EB4 putative transporter AbgT YP_001672436.1 240034 R 458817 CDS YP_001672437.1 167622143 5905437 complement(242229..243848) 1 NC_010334.1 PFAM: AbgT putative transporter; short chain fatty acid transporter; KEGG: slo:Shew_3654 AbgT putative transporter; putative transporter AbgT 243848 5905437 Shal_0202 Shewanella halifaxensis HAW-EB4 putative transporter AbgT YP_001672437.1 242229 R 458817 CDS YP_001672438.1 167622144 5905441 244721..245290 1 NC_010334.1 PFAM: LemA family protein; KEGG: slo:Shew_3652 LemA family protein; LemA family protein 245290 5905441 Shal_0203 Shewanella halifaxensis HAW-EB4 LemA family protein YP_001672438.1 244721 D 458817 CDS YP_001672439.1 167622145 5905442 245375..246397 1 NC_010334.1 KEGG: slo:Shew_3651 hypothetical protein; hypothetical protein 246397 5905442 Shal_0204 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672439.1 245375 D 458817 CDS YP_001672440.1 167622146 5905443 246394..247107 1 NC_010334.1 PFAM: Lytic transglycosylase catalytic; KEGG: shw:Sputw3181_3969 lytic transglycosylase, catalytic; lytic transglycosylase 247107 5905443 Shal_0205 Shewanella halifaxensis HAW-EB4 lytic transglycosylase YP_001672440.1 246394 D 458817 CDS YP_001672441.1 167622147 5905444 complement(247116..248498) 1 NC_010334.1 sodium/drug antiporter; functions as a Na(+)-driven Na(+)/drug antiporter; member of multidrug and toxic compound extrusion (MATE) family; extrudes acriflavines and other compounds by utilizing the sodium gradient; multidrug efflux pump VmrA 248498 vmrA 5905444 vmrA Shewanella halifaxensis HAW-EB4 multidrug efflux pump VmrA YP_001672441.1 247116 R 458817 CDS YP_001672442.1 167622148 5905354 248605..249483 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VFA0935 transcriptional regulators, LysR family; LysR family transcriptional regulator 249483 5905354 Shal_0207 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672442.1 248605 D 458817 CDS YP_001672443.1 167622149 5905543 249677..249934 1 NC_010334.1 KEGG: sbm:Shew185_4004 hypothetical protein; hypothetical protein 249934 5905543 Shal_0208 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672443.1 249677 D 458817 CDS YP_001672444.1 167622150 5905544 complement(250283..251125) 1 NC_010334.1 PFAM: protein of unknown function DUF519; KEGG: shm:Shewmr7_3922 protein of unknown function DUF519; hypothetical protein 251125 5905544 Shal_0209 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672444.1 250283 R 458817 CDS YP_001672445.1 167622151 5905518 complement(251182..252417) 1 NC_010334.1 PFAM: transcriptional regulator domain protein; KEGG: sbm:Shew185_3867 transcriptional regulator, CadC; transcriptional regulator CadC 252417 5905518 Shal_0210 Shewanella halifaxensis HAW-EB4 transcriptional regulator CadC YP_001672445.1 251182 R 458817 CDS YP_001672446.1 167622152 5905519 complement(252981..255275) 1 NC_010334.1 KEGG: shm:Shewmr7_2576 decaheme cytochrome c MtrF; hypothetical protein 255275 5905519 Shal_0211 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672446.1 252981 R 458817 CDS YP_001672447.1 167622153 5905414 255560..256321 1 NC_010334.1 PFAM: protein of unknown function DUF548; KEGG: sfr:Sfri_3857 protein of unknown function DUF548; hypothetical protein 256321 5905414 Shal_0212 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672447.1 255560 D 458817 CDS YP_001672448.1 167622154 5905601 complement(256439..257857) 1 NC_010334.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: sfr:Sfri_2763 MgtE intracellular region; magnesium transporter 257857 5905601 Shal_0213 Shewanella halifaxensis HAW-EB4 magnesium transporter YP_001672448.1 256439 R 458817 CDS YP_001672449.1 167622155 5905602 complement(258177..259316) 1 NC_010334.1 KEGG: slo:Shew_2682 hypothetical protein; hypothetical protein 259316 5905602 Shal_0214 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672449.1 258177 R 458817 CDS YP_001672450.1 167622156 5905678 complement(259529..260887) 1 NC_010334.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: slo:Shew_2681 general substrate transporter; major facilitator transporter 260887 5905678 Shal_0215 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001672450.1 259529 R 458817 CDS YP_001672451.1 167622157 5905679 complement(261162..261449) 1 NC_010334.1 KEGG: slo:Shew_2680 putative ferredoxin; putative ferredoxin 261449 5905679 Shal_0216 Shewanella halifaxensis HAW-EB4 putative ferredoxin YP_001672451.1 261162 R 458817 CDS YP_001672452.1 167622158 5905586 complement(261446..262735) 1 NC_010334.1 PFAM: monooxygenase FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_2679 FAD dependent oxidoreductase; FAD dependent oxidoreductase 262735 5905586 Shal_0217 Shewanella halifaxensis HAW-EB4 FAD dependent oxidoreductase YP_001672452.1 261446 R 458817 CDS YP_001672453.1 167622159 5905628 complement(262827..263768) 1 NC_010334.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: slo:Shew_2678 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 263768 5905628 Shal_0218 Shewanella halifaxensis HAW-EB4 electron transfer flavoprotein subunit alpha YP_001672453.1 262827 R 458817 CDS YP_001672454.1 167622160 5905629 complement(263782..264555) 1 NC_010334.1 required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; putative electron transfer flavoprotein FixA 264555 5905629 Shal_0219 Shewanella halifaxensis HAW-EB4 putative electron transfer flavoprotein FixA YP_001672454.1 263782 R 458817 CDS YP_001672455.1 167622161 5905869 265540..267129 1 NC_010334.1 catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter 267129 5905869 Shal_0220 Shewanella halifaxensis HAW-EB4 L-carnitine/gamma-butyrobetaine antiporter YP_001672455.1 265540 D 458817 CDS YP_001672456.1 167622162 5905870 267141..268277 1 NC_010334.1 catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase 268277 5905870 Shal_0221 Shewanella halifaxensis HAW-EB4 crotonobetainyl-CoA dehydrogenase YP_001672456.1 267141 D 458817 CDS YP_001672457.1 167622163 5905788 268532..269767 1 NC_010334.1 catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase 269767 5905788 Shal_0222 Shewanella halifaxensis HAW-EB4 crotonobetainyl-CoA:carnitine CoA-transferase YP_001672457.1 268532 D 458817 CDS YP_001672458.1 167622164 5905874 269778..271331 1 NC_010334.1 PFAM: AMP-dependent synthetase and ligase; KEGG: slo:Shew_2673 AMP-dependent synthetase and ligase; putative crotonobetaine/carnitine-CoA ligase 271331 caiC 5905874 caiC Shewanella halifaxensis HAW-EB4 putative crotonobetaine/carnitine-CoA ligase YP_001672458.1 269778 D 458817 CDS YP_001672459.1 167622165 5905875 271394..272179 1 NC_010334.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase 272179 5905875 Shal_0224 Shewanella halifaxensis HAW-EB4 carnitinyl-CoA dehydratase YP_001672459.1 271394 D 458817 CDS YP_001672460.1 167622166 5905926 272273..273124 1 NC_010334.1 PFAM: MaoC domain protein dehydratase; KEGG: drm:Dred_0577 MaoC domain protein dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase 273124 5905926 Shal_0225 Shewanella halifaxensis HAW-EB4 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase YP_001672460.1 272273 D 458817 CDS YP_001672461.1 167622167 5905927 273204..273872 1 NC_010334.1 involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE 273872 5905927 Shal_0226 Shewanella halifaxensis HAW-EB4 carnitine operon protein CaiE YP_001672461.1 273204 D 458817 CDS YP_001672462.1 167622168 5905890 274046..274984 1 NC_010334.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: slo:Shew_2671 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 274984 5905890 Shal_0227 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase domain-containing protein YP_001672462.1 274046 D 458817 CDS YP_001672463.1 167622169 5906654 275174..276064 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_2670 transcriptional regulator, LysR family; LysR family transcriptional regulator 276064 5906654 Shal_0228 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672463.1 275174 D 458817 CDS YP_001672464.1 167622170 5906655 complement(276244..276879) 1 NC_010334.1 PFAM: Disulphide bond formation protein DsbB; KEGG: son:SO_3870 disulfide bond formation protein; disulfide bond formation protein DsbB 276879 5906655 Shal_0229 Shewanella halifaxensis HAW-EB4 disulfide bond formation protein DsbB YP_001672464.1 276244 R 458817 CDS YP_001672465.1 167622171 5906517 complement(276889..277500) 1 NC_010334.1 PFAM: DSBA oxidoreductase; KEGG: son:SO_3871 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase 277500 5906517 Shal_0230 Shewanella halifaxensis HAW-EB4 DSBA oxidoreductase YP_001672465.1 276889 R 458817 CDS YP_001672466.1 167622172 5906518 complement(277569..279329) 1 NC_010334.1 PFAM: Arylsulfotransferase; KEGG: spt:SPA3941 hypothetical protein; arylsulfotransferase 279329 5906518 Shal_0231 Shewanella halifaxensis HAW-EB4 arylsulfotransferase YP_001672466.1 277569 R 458817 CDS YP_001672467.1 167622173 5905943 complement(279344..280090) 1 NC_010334.1 KEGG: vfi:VF0719 putative sugar hydrolase; hypothetical protein 280090 5905943 Shal_0232 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672467.1 279344 R 458817 CDS YP_001672468.1 167622174 5906949 280255..280920 1 NC_010334.1 PFAM: regulatory protein TetR; KEGG: slo:Shew_0277 transcriptional regulator, TetR family; TetR family transcriptional regulator 280920 5906949 Shal_0233 Shewanella halifaxensis HAW-EB4 TetR family transcriptional regulator YP_001672468.1 280255 D 458817 CDS YP_001672469.1 167622175 5906950 complement(281119..281754) 1 NC_010334.1 PFAM: Disulphide bond formation protein DsbB; KEGG: son:SO_3870 disulfide bond formation protein; disulfide bond formation protein DsbB 281754 5906950 Shal_0234 Shewanella halifaxensis HAW-EB4 disulfide bond formation protein DsbB YP_001672469.1 281119 R 458817 CDS YP_001672470.1 167622176 5906936 complement(281764..282375) 1 NC_010334.1 PFAM: DSBA oxidoreductase; KEGG: son:SO_3871 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase 282375 5906936 Shal_0235 Shewanella halifaxensis HAW-EB4 DSBA oxidoreductase YP_001672470.1 281764 R 458817 CDS YP_001672471.1 167622177 5906937 283096..284886 1 NC_010334.1 PFAM: Arylsulfotransferase; KEGG: son:SO_3872 arylsulfate sulfotransferase; arylsulfotransferase 284886 5906937 Shal_0236 Shewanella halifaxensis HAW-EB4 arylsulfotransferase YP_001672471.1 283096 D 458817 CDS YP_001672472.1 167622178 5906916 284936..285694 1 NC_010334.1 KEGG: son:SO_3873 hypothetical protein; hypothetical protein 285694 5906916 Shal_0237 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672472.1 284936 D 458817 CDS YP_001672473.1 167622179 5906878 285880..286851 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: son:SO_3874 transcriptional regulator, LysR family; LysR family transcriptional regulator 286851 5906878 Shal_0238 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672473.1 285880 D 458817 CDS YP_001672474.1 167622180 5906879 complement(286906..288165) 1 NC_010334.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 288165 envZ 5906879 envZ Shewanella halifaxensis HAW-EB4 osmolarity sensor protein YP_001672474.1 286906 R 458817 CDS YP_001672475.1 167622181 5906863 complement(288261..288986) 1 NC_010334.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 288986 ompR 5906863 ompR Shewanella halifaxensis HAW-EB4 osmolarity response regulator YP_001672475.1 288261 R 458817 CDS YP_001672476.1 167622182 5906864 289338..289817 1 NC_010334.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: stm:STM3503 transcription elongation factor and transcript cleavage; transcription elongation factor GreB 289817 5906864 Shal_0241 Shewanella halifaxensis HAW-EB4 transcription elongation factor GreB YP_001672476.1 289338 D 458817 CDS YP_001672477.1 167622183 5906857 289982..292339 1 NC_010334.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: slo:Shew_3634 RNA binding S1 domain protein; RNA-binding S1 domain-containing protein 292339 5906857 Shal_0242 Shewanella halifaxensis HAW-EB4 RNA-binding S1 domain-containing protein YP_001672477.1 289982 D 458817 CDS YP_001672478.1 167622184 5906773 complement(292389..292883) 1 NC_010334.1 KEGG: saz:Sama_3506 hypothetical protein; hypothetical protein 292883 5906773 Shal_0243 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672478.1 292389 R 458817 CDS YP_001672479.1 167622185 5906774 complement(292982..293752) 1 NC_010334.1 KEGG: sbm:Shew185_4199 BioH protein; TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; bioH protein 293752 5906774 Shal_0244 Shewanella halifaxensis HAW-EB4 bioH protein YP_001672479.1 292982 R 458817 CDS YP_001672480.1 167622186 5906733 293804..294568 1 NC_010334.1 KEGG: shw:Sputw3181_0113 competence protein ComF; competence protein ComF 294568 5906733 Shal_0245 Shewanella halifaxensis HAW-EB4 competence protein ComF YP_001672480.1 293804 D 458817 CDS YP_001672481.1 167622187 5906734 complement(294599..297139) 1 NC_010334.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: slo:Shew_0105 peptidase M14, carboxypeptidase A; peptidase M14 carboxypeptidase A 297139 5906734 Shal_0246 Shewanella halifaxensis HAW-EB4 peptidase M14 carboxypeptidase A YP_001672481.1 294599 R 458817 CDS YP_001672482.1 167622188 5906709 297350..297928 1 NC_010334.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 297928 5906709 Shal_0247 Shewanella halifaxensis HAW-EB4 putative DNA uptake protein YP_001672482.1 297350 D 458817 CDS YP_001672483.1 167622189 5906629 complement(298019..299350) 1 NC_010334.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sbl:Sbal_0144 MATE efflux family protein; MATE efflux family protein 299350 5906629 Shal_0248 Shewanella halifaxensis HAW-EB4 MATE efflux family protein YP_001672483.1 298019 R 458817 CDS YP_001672484.1 167622190 5906630 299369..300415 1 NC_010334.1 PFAM: polysaccharide deacetylase; KEGG: sbl:Sbal_0145 polysaccharide deacetylase; polysaccharide deacetylase 300415 5906630 Shal_0249 Shewanella halifaxensis HAW-EB4 polysaccharide deacetylase YP_001672484.1 299369 D 458817 CDS YP_001672485.1 167622191 5906528 complement(300630..301259) 1 NC_010334.1 PFAM: electron transport protein SCO1/SenC; KEGG: slo:Shew_0116 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 301259 5906528 Shal_0250 Shewanella halifaxensis HAW-EB4 electron transport protein SCO1/SenC YP_001672485.1 300630 R 458817 CDS YP_001672486.1 167622192 5906529 complement(301349..302254) 1 NC_010334.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 302254 5906529 Shal_0251 Shewanella halifaxensis HAW-EB4 protoheme IX farnesyltransferase YP_001672486.1 301349 R 458817 CDS YP_001672487.1 167622193 5906348 complement(302268..303251) 1 NC_010334.1 PFAM: cytochrome oxidase assembly; KEGG: sdn:Sden_3523 cytochrome oxidase assembly; cytochrome oxidase assembly 303251 5906348 Shal_0252 Shewanella halifaxensis HAW-EB4 cytochrome oxidase assembly YP_001672487.1 302268 R 458817 CDS YP_001672488.1 167622194 5905880 complement(303265..303810) 1 NC_010334.1 KEGG: slo:Shew_0119 hypothetical protein; hypothetical protein 303810 5905880 Shal_0253 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672488.1 303265 R 458817 CDS YP_001672489.1 167622195 5905881 complement(303938..304867) 1 NC_010334.1 KEGG: shw:Sputw3181_0129 hypothetical protein; hypothetical protein 304867 5905881 Shal_0254 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672489.1 303938 R 458817 CDS YP_001672490.1 167622196 5905968 complement(304932..305813) 1 NC_010334.1 PFAM: cytochrome c oxidase subunit III; KEGG: slo:Shew_0122 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 305813 5905968 Shal_0255 Shewanella halifaxensis HAW-EB4 cytochrome c oxidase subunit III YP_001672490.1 304932 R 458817 CDS YP_001672491.1 167622197 5905969 complement(305925..306509) 1 NC_010334.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 306509 5905969 Shal_0256 Shewanella halifaxensis HAW-EB4 cytochrome C oxidase assembly protein YP_001672491.1 305925 R 458817 CDS YP_001672492.1 167622198 5906999 complement(306512..308116) 1 NC_010334.1 KEGG: shn:Shewana3_3992 cytochrome c oxidase, subunit I; TIGRFAM: Cytochrome c oxidase subunit I type; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I type 308116 5906999 Shal_0257 Shewanella halifaxensis HAW-EB4 cytochrome c oxidase subunit I type YP_001672492.1 306512 R 458817 CDS YP_001672493.1 167622199 5906923 complement(308126..309712) 1 NC_010334.1 KEGG: slo:Shew_0125 cytochrome c oxidase, subunit II; TIGRFAM: Cytochrome c oxidase subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region; cytochrome c oxidase subunit II 309712 5906923 Shal_0258 Shewanella halifaxensis HAW-EB4 cytochrome c oxidase subunit II YP_001672493.1 308126 R 458817 CDS YP_001672494.1 167622200 5906924 complement(310190..310726) 1 NC_010334.1 KEGG: son:SO_4604 hypothetical protein; hypothetical protein 310726 5906924 Shal_0259 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672494.1 310190 R 458817 CDS YP_001672495.1 167622201 5906899 complement(310723..311343) 1 NC_010334.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 311343 5906899 Shal_0260 Shewanella halifaxensis HAW-EB4 LexA repressor YP_001672495.1 310723 R 458817 CDS YP_001672496.1 167622202 5906900 complement(311970..313604) 1 NC_010334.1 TIGRFAM: FGGY-family pentulose kinase; PFAM: carbohydrate kinase FGGY; KEGG: ppr:PBPRB0722 putative carbohydrate kinase; FGGY-family pentulose kinase 313604 5906900 Shal_0261 Shewanella halifaxensis HAW-EB4 FGGY-family pentulose kinase YP_001672496.1 311970 R 458817 CDS YP_001672497.1 167622203 5906874 complement(313613..314572) 1 NC_010334.1 PFAM: inner-membrane translocator; KEGG: ppr:PBPRB0721 putative ABC transporter, permease protein; monosaccharide-transporting ATPase 314572 5906874 Shal_0262 Shewanella halifaxensis HAW-EB4 monosaccharide-transporting ATPase YP_001672497.1 313613 R 458817 CDS YP_001672498.1 167622204 5906676 complement(314572..315570) 1 NC_010334.1 PFAM: inner-membrane translocator; KEGG: ppr:PBPRB0720 putative permease of ABC transporter; monosaccharide-transporting ATPase 315570 5906676 Shal_0263 Shewanella halifaxensis HAW-EB4 monosaccharide-transporting ATPase YP_001672498.1 314572 R 458817 CDS YP_001672499.1 167622205 5906677 complement(315563..317074) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB0719 putative ATP-binding protein of ABCtransporter; ABC transporter-like protein 317074 5906677 Shal_0264 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001672499.1 315563 R 458817 CDS YP_001672500.1 167622206 5906615 complement(317216..318190) 1 NC_010334.1 KEGG: ppr:PBPRB0718 putative periplasmic binding protein; putative periplasmic-binding protein 318190 5906615 Shal_0265 Shewanella halifaxensis HAW-EB4 putative periplasmic-binding protein YP_001672500.1 317216 R 458817 CDS YP_001672501.1 167622207 5906616 318924..319838 1 NC_010334.1 KEGG: vfi:VF1104 hypothetical protein; hypothetical protein 319838 5906616 Shal_0266 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672501.1 318924 D 458817 CDS YP_001672502.1 167622208 5906610 319838..321076 1 NC_010334.1 PFAM: protein of unknown function DUF214; KEGG: slo:Shew_2660 protein of unknown function DUF214; hypothetical protein 321076 5906610 Shal_0267 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672502.1 319838 D 458817 CDS YP_001672503.1 167622209 5906553 321189..322313 1 NC_010334.1 PFAM: protein of unknown function DUF214; KEGG: slo:Shew_2659 protein of unknown function DUF214; hypothetical protein 322313 5906553 Shal_0268 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672503.1 321189 D 458817 CDS YP_001672504.1 167622210 5906554 322347..323030 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_5040 ABC transporter, ATP-binding protein; ABC transporter-like protein 323030 5906554 Shal_0269 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001672504.1 322347 D 458817 CDS YP_001672505.1 167622211 5906540 323040..324341 1 NC_010334.1 KEGG: cps:CPS_5039 hypothetical protein; hypothetical protein 324341 5906540 Shal_0270 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672505.1 323040 D 458817 CDS YP_001672506.1 167622212 5906541 324601..327024 1 NC_010334.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 327024 5906541 Shal_0271 Shewanella halifaxensis HAW-EB4 glycerol-3-phosphate acyltransferase YP_001672506.1 324601 D 458817 CDS YP_001672507.1 167622213 5906408 327024..328280 1 NC_010334.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: slo:Shew_3531 aromatic amino acid transporter; aromatic amino acid transporter 328280 5906408 Shal_0272 Shewanella halifaxensis HAW-EB4 aromatic amino acid transporter YP_001672507.1 327024 D 458817 CDS YP_001672508.1 167622214 5905125 complement(328314..329381) 1 NC_010334.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ppr:PBPRB1682 hypothetical AraC-type transcriptional regulator; AraC family transcriptional regulator 329381 5905125 Shal_0273 Shewanella halifaxensis HAW-EB4 AraC family transcriptional regulator YP_001672508.1 328314 R 458817 CDS YP_001672509.1 167622215 5905126 329480..329827 1 NC_010334.1 KEGG: ppr:PBPRB1681 putative permease of the major facilitator superfamily; hypothetical protein 329827 5905126 Shal_0274 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672509.1 329480 D 458817 CDS YP_001672510.1 167622216 5905063 329820..331043 1 NC_010334.1 PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRB1680 putative multidrug resistance efflux pump; secretion protein HlyD family protein 331043 5905063 Shal_0275 Shewanella halifaxensis HAW-EB4 secretion protein HlyD family protein YP_001672510.1 329820 D 458817 CDS YP_001672511.1 167622217 5905064 complement(331128..332306) 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sdn:Sden_0245 GGDEF domain; diguanylate cyclase 332306 5905064 Shal_0276 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001672511.1 331128 R 458817 CDS YP_001672512.1 167622218 5904770 332472..333254 1 NC_010334.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sdn:Sden_3512 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 333254 5904770 Shal_0277 Shewanella halifaxensis HAW-EB4 glyoxalase/bleomycin resistance protein/dioxygenase YP_001672512.1 332472 D 458817 CDS YP_001672513.1 167622219 5903749 complement(333328..336465) 1 NC_010334.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: sfr:Sfri_0266 heavy metal efflux pump, CzcA family protein; CzcA family heavy metal efflux protein 336465 5903749 Shal_0278 Shewanella halifaxensis HAW-EB4 CzcA family heavy metal efflux protein YP_001672513.1 333328 R 458817 CDS YP_001672514.1 167622220 5903750 complement(336478..338160) 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sfr:Sfri_0267 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 338160 5903750 Shal_0279 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001672514.1 336478 R 458817 CDS YP_001672515.1 167622221 5906976 complement(338185..338799) 1 NC_010334.1 KEGG: slo:Shew_3536 hypothetical protein; hypothetical protein 338799 5906976 Shal_0280 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672515.1 338185 R 458817 CDS YP_001672516.1 167622222 5906977 complement(338945..339361) 1 NC_010334.1 KEGG: slo:Shew_3537 hypothetical protein; hypothetical protein 339361 5906977 Shal_0281 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672516.1 338945 R 458817 CDS YP_001672517.1 167622223 5903393 complement(339479..339898) 1 NC_010334.1 KEGG: sfr:Sfri_0591 hypothetical protein; hypothetical protein 339898 5903393 Shal_0282 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672517.1 339479 R 458817 CDS YP_001672518.1 167622224 5906202 complement(340186..340620) 1 NC_010334.1 KEGG: slo:Shew_3539 hypothetical protein; hypothetical protein 340620 5906202 Shal_0283 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672518.1 340186 R 458817 CDS YP_001672519.1 167622225 5906203 341012..341575 1 NC_010334.1 PFAM: NapC/NirT cytochrome c domain protein; KEGG: slo:Shew_3540 NapC/NirT cytochrome c domain protein; NapC/NirT cytochrome c domain-containing protein 341575 5906203 Shal_0284 Shewanella halifaxensis HAW-EB4 NapC/NirT cytochrome c domain-containing protein YP_001672519.1 341012 D 458817 CDS YP_001672520.1 167622226 5906371 complement(342009..342293) 1 NC_010334.1 PFAM: protein of unknown function DUF1145; KEGG: spc:Sputcn32_0287 protein of unknown function DUF1145; hypothetical protein 342293 5906371 Shal_0285 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672520.1 342009 R 458817 CDS YP_001672521.1 167622227 5906372 complement(342294..342914) 1 NC_010334.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein; KEGG: shm:Shewmr7_3848 putative methyltransferase; putative methyltransferase 342914 5906372 Shal_0286 Shewanella halifaxensis HAW-EB4 putative methyltransferase YP_001672521.1 342294 R 458817 CDS YP_001672522.1 167622228 5906442 343140..344933 1 NC_010334.1 KEGG: sbm:Shew185_4164 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 344933 5906442 Shal_0287 Shewanella halifaxensis HAW-EB4 signal recognition particle-docking protein FtsY YP_001672522.1 343140 D 458817 CDS YP_001672523.1 167622229 5907041 345005..345706 1 NC_010334.1 KEGG: slo:Shew_3605 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 345706 5907041 Shal_0288 Shewanella halifaxensis HAW-EB4 cell division ATP-binding protein FtsE YP_001672523.1 345005 D 458817 CDS YP_001672524.1 167622230 5907042 345706..346671 1 NC_010334.1 PFAM: protein of unknown function DUF214; KEGG: slo:Shew_3604 protein of unknown function DUF214; hypothetical protein 346671 5907042 Shal_0289 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672524.1 345706 D 458817 CDS YP_001672525.1 167622231 5904656 346897..347754 1 NC_010334.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 347754 5904656 Shal_0290 Shewanella halifaxensis HAW-EB4 RNA polymerase factor sigma-32 YP_001672525.1 346897 D 458817 CDS YP_001672526.1 167622232 5904657 complement(348691..349050) 1 NC_010334.1 KEGG: ppr:PBPRA1981 hypothetical protein; hypothetical protein 349050 5904657 Shal_0291 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672526.1 348691 R 458817 CDS YP_001672527.1 167622233 5904423 349416..351221 1 NC_010334.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; KEGG: vha:VIBHAR_05576 hypothetical protein; proprotein convertase P 351221 5904423 Shal_0292 Shewanella halifaxensis HAW-EB4 proprotein convertase P YP_001672527.1 349416 D 458817 CDS YP_001672528.1 167622234 5904617 351225..351701 1 NC_010334.1 KEGG: vha:VIBHAR_05575 hypothetical protein; hypothetical protein 351701 5904617 Shal_0293 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672528.1 351225 D 458817 CDS YP_001672529.1 167622235 5904618 complement(352696..354228) 1 NC_010334.1 TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: shn:Shewana3_3968 O-succinylbenzoate-CoA ligase; o-succinylbenzoate--CoA ligase 354228 5904618 Shal_0294 Shewanella halifaxensis HAW-EB4 o-succinylbenzoate--CoA ligase YP_001672529.1 352696 R 458817 CDS YP_001672530.1 167622236 5905018 complement(354351..355412) 1 NC_010334.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 355412 5905018 Shal_0295 Shewanella halifaxensis HAW-EB4 O-succinylbenzoate synthase YP_001672530.1 354351 R 458817 CDS YP_001672531.1 167622237 5905019 complement(355431..356282) 1 NC_010334.1 PFAM: alpha/beta hydrolase fold; KEGG: she:Shewmr4_3768 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 356282 5905019 Shal_0296 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase fold protein YP_001672531.1 355431 R 458817 CDS YP_001672532.1 167622238 5904512 complement(356282..357991) 1 NC_010334.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 357991 5904512 Shal_0297 Shewanella halifaxensis HAW-EB4 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_001672532.1 356282 R 458817 CDS YP_001672533.1 167622239 5904426 358237..359208 1 NC_010334.1 PFAM: regulatory protein LysR; KEGG: saz:Sama_2899 transcriptional regulator-like protein; LysR family transcriptional regulator 359208 5904426 Shal_0298 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672533.1 358237 D 458817 CDS YP_001672534.1 167622240 5904427 complement(359276..360241) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_3964 transcriptional regulator, LysR family; LysR family transcriptional regulator 360241 5904427 Shal_0299 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672534.1 359276 R 458817 CDS YP_001672535.1 167622241 5906184 360798..361289 1 NC_010334.1 KEGG: slo:Shew_3155 hypothetical protein; hypothetical protein 361289 5906184 Shal_0300 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672535.1 360798 D 458817 CDS YP_001672536.1 167622242 5906185 361373..361843 1 NC_010334.1 KEGG: saz:Sama_2902 hypothetical protein; hypothetical protein 361843 5906185 Shal_0301 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672536.1 361373 D 458817 CDS YP_001672537.1 167622243 5906091 361857..362540 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: she:Shewmr4_3763 twin-arginine translocation pathway signal; 4Fe-4S ferredoxin 362540 5906091 Shal_0302 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001672537.1 361857 D 458817 CDS YP_001672538.1 167622244 5906576 362537..363478 1 NC_010334.1 PFAM: Polysulphide reductase NrfD; KEGG: shw:Sputw3181_3893 polysulphide reductase, NrfD; polysulfide reductase NrfD 363478 5906576 Shal_0303 Shewanella halifaxensis HAW-EB4 polysulfide reductase NrfD YP_001672538.1 362537 D 458817 CDS YP_001672539.1 167622245 5906577 363500..363790 1 NC_010334.1 KEGG: shw:Sputw3181_2184 hypothetical protein; hypothetical protein 363790 5906577 Shal_0304 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672539.1 363500 D 458817 CDS YP_001672540.1 167622246 5906501 complement(364043..364504) 1 NC_010334.1 PFAM: protein of unknown function DUF1332; KEGG: shw:Sputw3181_3890 protein of unknown function DUF1332; hypothetical protein 364504 5906501 Shal_0305 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672540.1 364043 R 458817 CDS YP_001672541.1 167622247 5906502 complement(364606..365124) 1 NC_010334.1 KEGG: slo:Shew_3594 hypothetical protein; hypothetical protein 365124 5906502 Shal_0306 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672541.1 364606 R 458817 CDS YP_001672542.1 167622248 5906718 365308..366054 1 NC_010334.1 KEGG: slo:Shew_3593 hypothetical protein; hypothetical protein 366054 5906718 Shal_0307 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672542.1 365308 D 458817 CDS YP_001672543.1 167622249 5903635 366178..367602 1 NC_010334.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: slo:Shew_3592 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 367602 5903635 Shal_0308 Shewanella halifaxensis HAW-EB4 Sel1 domain-containing protein YP_001672543.1 366178 D 458817 CDS YP_001672544.1 167622250 5903636 367748..369025 1 NC_010334.1 KEGG: slo:Shew_3591 hypothetical protein; hypothetical protein 369025 5903636 Shal_0309 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672544.1 367748 D 458817 CDS YP_001672545.1 167622251 5903904 complement(369050..369382) 1 NC_010334.1 KEGG: slo:Shew_3590 hypothetical protein; hypothetical protein 369382 5903904 Shal_0310 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672545.1 369050 R 458817 CDS YP_001672546.1 167622252 5903905 complement(369540..370508) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_3589 transcriptional regulator, LysR family; LysR family transcriptional regulator 370508 5903905 Shal_0311 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672546.1 369540 R 458817 CDS YP_001672547.1 167622253 5905833 370609..371811 1 NC_010334.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_3948 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 371811 5905833 Shal_0312 Shewanella halifaxensis HAW-EB4 Bcr/CflA subfamily drug resistance transporter YP_001672547.1 370609 D 458817 CDS YP_001672548.1 167622254 5906164 371981..372574 1 NC_010334.1 PFAM: DTW domain containing protein; KEGG: sbm:Shew185_4137 DTW domain containing protein; DTW domain-containing protein 372574 5906164 Shal_0313 Shewanella halifaxensis HAW-EB4 DTW domain-containing protein YP_001672548.1 371981 D 458817 CDS YP_001672549.1 167622255 5906165 complement(372829..374976) 1 NC_010334.1 KEGG: sbl:Sbal_0199 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 374976 5906165 Shal_0314 Shewanella halifaxensis HAW-EB4 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001672549.1 372829 R 458817 CDS YP_001672550.1 167622256 5906941 375346..375738 1 NC_010334.1 KEGG: slo:Shew_3584 hypothetical protein; hypothetical protein 375738 5906941 Shal_0315 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672550.1 375346 D 458817 CDS YP_001672551.1 167622257 5906942 375754..376389 1 NC_010334.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_3583 methyltransferase type 12; type 11 methyltransferase 376389 5906942 Shal_0316 Shewanella halifaxensis HAW-EB4 type 11 methyltransferase YP_001672551.1 375754 D 458817 CDS YP_001672552.1 167622258 5906302 376477..377448 1 NC_010334.1 KEGG: bfs:BF1302 hypothetical protein; hypothetical protein 377448 5906302 Shal_0317 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672552.1 376477 D 458817 CDS YP_001672553.1 167622259 5903940 complement(377522..378190) 1 NC_010334.1 PFAM: type IV pilus assembly PilZ; KEGG: slo:Shew_3582 hypothetical protein; type IV pilus assembly PilZ 378190 5903940 Shal_0318 Shewanella halifaxensis HAW-EB4 type IV pilus assembly PilZ YP_001672553.1 377522 R 458817 CDS YP_001672554.1 167622260 5903941 378480..379811 1 NC_010334.1 PFAM: peptidase M16 domain protein; KEGG: slo:Shew_3581 peptidase M16 domain protein; peptidase M16 domain-containing protein 379811 5903941 Shal_0319 Shewanella halifaxensis HAW-EB4 peptidase M16 domain-containing protein YP_001672554.1 378480 D 458817 CDS YP_001672555.1 167622261 5903898 379808..381274 1 NC_010334.1 PFAM: peptidase M16 domain protein; KEGG: she:Shewmr4_3741 peptidase M16 domain protein; peptidase M16 domain-containing protein 381274 5903898 Shal_0320 Shewanella halifaxensis HAW-EB4 peptidase M16 domain-containing protein YP_001672555.1 379808 D 458817 CDS YP_001672556.1 167622262 5903899 complement(381411..381872) 1 NC_010334.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sbm:Shew185_4126 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase 381872 5903899 Shal_0321 Shewanella halifaxensis HAW-EB4 RNA methyltransferase YP_001672556.1 381411 R 458817 CDS YP_001672557.1 167622263 5903857 382088..383020 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbm:Shew185_2285 transcriptional regulator, LysR family; LysR family transcriptional regulator 383020 5903857 Shal_0322 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672557.1 382088 D 458817 CDS YP_001672558.1 167622264 5903717 383624..384397 1 NC_010334.1 hypothetical protein 384397 5903717 Shal_0323 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672558.1 383624 D 458817 CDS YP_001672559.1 167622265 5903718 384811..385155 1 NC_010334.1 KEGG: esa:ESA_02741 hypothetical protein; hypothetical protein 385155 5903718 Shal_0324 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672559.1 384811 D 458817 CDS YP_001672560.1 167622266 5904108 386672..386920 1 NC_010334.1 KEGG: vha:VIBHAR_p08260 hypothetical protein; hypothetical protein 386920 5904108 Shal_0325 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672560.1 386672 D 458817 CDS YP_001672561.1 167622267 5904109 complement(387341..388234) 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: sfr:Sfri_1984 radical SAM domain protein; radical SAM domain-containing protein 388234 5904109 Shal_0326 Shewanella halifaxensis HAW-EB4 radical SAM domain-containing protein YP_001672561.1 387341 R 458817 CDS YP_001672562.1 167622268 5903473 complement(388291..389814) 1 NC_010334.1 KEGG: sbm:Shew185_2283 hypothetical protein; hypothetical protein 389814 5903473 Shal_0327 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672562.1 388291 R 458817 CDS YP_001672563.1 167622269 5904168 complement(390068..391588) 1 NC_010334.1 PFAM: aldehyde dehydrogenase; KEGG: shm:Shewmr7_3772 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 391588 5904168 Shal_0328 Shewanella halifaxensis HAW-EB4 aldehyde dehydrogenase YP_001672563.1 390068 R 458817 CDS YP_001672564.1 167622270 5904169 391885..392865 1 NC_010334.1 TIGRFAM: Quinone oxidoreductase putative YhdH/YhfP; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sbl:Sbal_0250 alcohol dehydrogenase, zinc-binding domain protein; quinone oxidoreductase putative YhdH/YhfP 392865 5904169 Shal_0329 Shewanella halifaxensis HAW-EB4 quinone oxidoreductase putative YhdH/YhfP YP_001672564.1 391885 D 458817 CDS YP_001672565.1 167622271 5903992 complement(393275..394207) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VF0021 transcriptional regulators, LysR family; LysR family transcriptional regulator 394207 5903992 Shal_0330 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672565.1 393275 R 458817 CDS YP_001672566.1 167622272 5903993 394704..396224 1 NC_010334.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: spc:Sputcn32_3536 flavocytochrome c; flavocytochrome c 396224 5903993 Shal_0331 Shewanella halifaxensis HAW-EB4 flavocytochrome c YP_001672566.1 394704 D 458817 CDS YP_001672567.1 167622273 5904050 396253..396606 1 NC_010334.1 KEGG: spc:Sputcn32_3535 tetraheme cytochrome c; tetraheme cytochrome c 396606 5904050 Shal_0332 Shewanella halifaxensis HAW-EB4 tetraheme cytochrome c YP_001672567.1 396253 D 458817 CDS YP_001672568.1 167622274 5904122 396869..398113 1 NC_010334.1 KEGG: spc:Sputcn32_3534 hypothetical protein; hypothetical protein 398113 5904122 Shal_0333 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672568.1 396869 D 458817 CDS YP_001672569.1 167622275 5904123 398330..399439 1 NC_010334.1 KEGG: sbm:Shew185_2536 hypothetical protein; hypothetical protein 399439 5904123 Shal_0334 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672569.1 398330 D 458817 CDS YP_001672570.1 167622276 5904149 complement(399578..400465) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shm:Shewmr7_2226 transcriptional regulator, LysR family; LysR family transcriptional regulator 400465 5904149 Shal_0335 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672570.1 399578 R 458817 CDS YP_001672571.1 167622277 5904150 400587..401234 1 NC_010334.1 PFAM: regulatory protein TetR; KEGG: sbl:Sbal_0259 putative transcriptional regulator, TetR family; regulatory protein TetR 401234 5904150 Shal_0336 Shewanella halifaxensis HAW-EB4 regulatory protein TetR YP_001672571.1 400587 D 458817 CDS YP_001672572.1 167622278 5903793 complement(401249..402619) 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sbl:Sbal_0260 integral membrane sensor signal transduction histidine kinase; histidine kinase 402619 5903793 Shal_0337 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001672572.1 401249 R 458817 CDS YP_001672573.1 167622279 5903500 complement(402620..403303) 1 NC_010334.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_3570 two component transcriptional regulator, winged helix family; two component transcriptional regulator 403303 5903500 Shal_0338 Shewanella halifaxensis HAW-EB4 two component transcriptional regulator YP_001672573.1 402620 R 458817 CDS YP_001672574.1 167622280 5903501 403532..404014 1 NC_010334.1 PFAM: protein of unknown function Spy-related; KEGG: slo:Shew_3569 protein of unknown function, Spy-related; hypothetical protein 404014 5903501 Shal_0339 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672574.1 403532 D 458817 CDS YP_001672575.1 167622281 5903518 404164..405033 1 NC_010334.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: shm:Shewmr7_3767 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 405033 5903518 Shal_0340 Shewanella halifaxensis HAW-EB4 cation diffusion facilitator family transporter YP_001672575.1 404164 D 458817 CDS YP_001672576.1 167622282 5903519 complement(405148..406557) 1 NC_010334.1 KEGG: shm:Shewmr7_3764 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 406557 5903519 Shal_0341 Shewanella halifaxensis HAW-EB4 nitrogen metabolism transcriptional regulator NtrC YP_001672576.1 405148 R 458817 CDS YP_001672577.1 167622283 5903548 complement(406575..407615) 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sbl:Sbal_0267 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase, nitrogen specific, NtrB 407615 5903548 Shal_0342 Shewanella halifaxensis HAW-EB4 signal transduction histidine kinase, nitrogen specific, NtrB YP_001672577.1 406575 R 458817 CDS YP_001672578.1 167622284 5903571 complement(407765..408313) 1 NC_010334.1 KEGG: slo:Shew_3559 hypothetical protein; hypothetical protein 408313 5903571 Shal_0343 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672578.1 407765 R 458817 CDS YP_001672579.1 167622285 5903572 408544..409194 1 NC_010334.1 KEGG: ppr:PBPRA1243 hypothetical protein; hypothetical protein 409194 5903572 Shal_0344 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672579.1 408544 D 458817 CDS YP_001672580.1 167622286 5903581 complement(409381..410058) 1 NC_010334.1 PFAM: ThiJ/PfpI domain protein; KEGG: sbm:Shew185_0262 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 410058 5903581 Shal_0345 Shewanella halifaxensis HAW-EB4 ThiJ/PfpI domain-containing protein YP_001672580.1 409381 R 458817 CDS YP_001672581.1 167622287 5903582 complement(410170..411327) 1 NC_010334.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: shw:Sputw3181_0227 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 411327 5903582 Shal_0346 Shewanella halifaxensis HAW-EB4 iron-containing alcohol dehydrogenase YP_001672581.1 410170 R 458817 CDS YP_001672582.1 167622288 5903626 complement(411474..411926) 1 NC_010334.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: slo:Shew_3558 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 411926 5903626 Shal_0347 Shewanella halifaxensis HAW-EB4 AsnC family transcriptional regulator YP_001672582.1 411474 R 458817 CDS YP_001672583.1 167622289 5903594 complement(412290..412595) 1 NC_010334.1 hypothetical protein 412595 5903594 Shal_0348 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672583.1 412290 R 458817 CDS YP_001672584.1 167622290 5903595 412844..413854 1 NC_010334.1 KEGG: sus:Acid_2127 glycosyl hydrolase, BNR repeat-containing protein; BNR repeat-containing glycosyl hydrolase 413854 5903595 Shal_0349 Shewanella halifaxensis HAW-EB4 BNR repeat-containing glycosyl hydrolase YP_001672584.1 412844 D 458817 CDS YP_001672585.1 167622291 5907055 complement(413922..414236) 1 NC_010334.1 PFAM: helix-turn-helix domain protein; KEGG: pat:Patl_1386 transcriptional regulator, XRE family; XRE family transcriptional regulator 414236 5907055 Shal_0350 Shewanella halifaxensis HAW-EB4 XRE family transcriptional regulator YP_001672585.1 413922 R 458817 CDS YP_001672586.1 167622292 5907056 complement(414278..414706) 1 NC_010334.1 hypothetical protein 414706 5907056 Shal_0351 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672586.1 414278 R 458817 CDS YP_001672587.1 167622293 5904697 complement(414929..416164) 1 NC_010334.1 PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_3722 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 416164 5904697 Shal_0352 Shewanella halifaxensis HAW-EB4 sodium:dicarboxylate symporter YP_001672587.1 414929 R 458817 CDS YP_001672588.1 167622294 5903294 complement(416340..417749) 1 NC_010334.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 417749 glnA 5903294 glnA Shewanella halifaxensis HAW-EB4 glutamine synthetase YP_001672588.1 416340 R 458817 CDS YP_001672589.1 167622295 5903295 418452..420263 1 NC_010334.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: saz:Sama_3415 virulence regulator BipA; GTP-binding protein TypA 420263 5903295 Shal_0354 Shewanella halifaxensis HAW-EB4 GTP-binding protein TypA YP_001672589.1 418452 D 458817 CDS YP_001672590.1 167622296 5904363 420918..422369 1 NC_010334.1 PFAM: Disulphide bond formation protein DsbB; KEGG: she:Shewmr4_3658 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 422369 5904363 Shal_0355 Shewanella halifaxensis HAW-EB4 disulfide bond formation protein DsbB YP_001672590.1 420918 D 458817 CDS YP_001672591.1 167622297 5904364 422650..423513 1 NC_010334.1 TIGRFAM: pyridoxal kinase; KEGG: vfi:VF2056 pyridoxine kinase; pyridoxal kinase 423513 5904364 Shal_0356 Shewanella halifaxensis HAW-EB4 pyridoxal kinase YP_001672591.1 422650 D 458817 CDS YP_001672592.1 167622298 5905069 complement(423905..425119) 1 NC_010334.1 KEGG: slo:Shew_3549 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 425119 5905069 Shal_0357 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001672592.1 423905 R 458817 CDS YP_001672593.1 167622299 5905059 complement(425302..425949) 1 NC_010334.1 KEGG: sbm:Shew185_0312 hypothetical protein; hypothetical protein 425949 5905059 Shal_0358 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672593.1 425302 R 458817 CDS YP_001672594.1 167622300 5905060 complement(425981..426205) 1 NC_010334.1 KEGG: slo:Shew_3546 hypothetical protein; hypothetical protein 426205 5905060 Shal_0359 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672594.1 425981 R 458817 CDS YP_001672595.1 167622301 5904854 426342..427322 1 NC_010334.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 427322 rbn 5904854 rbn Shewanella halifaxensis HAW-EB4 ribonuclease BN YP_001672595.1 426342 D 458817 CDS YP_001672596.1 167622302 5904855 427328..428260 1 NC_010334.1 PFAM: alpha/beta hydrolase fold; KEGG: slo:Shew_3544 alpha/beta hydrolase fold; prolyl aminopeptidase 428260 5904855 Shal_0361 Shewanella halifaxensis HAW-EB4 prolyl aminopeptidase YP_001672596.1 427328 D 458817 CDS YP_001672597.1 167622303 5905542 428281..428862 1 NC_010334.1 KEGG: sbm:Shew185_0316 hypothetical protein; hypothetical protein 428862 5905542 Shal_0362 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672597.1 428281 D 458817 CDS YP_001672598.1 167622304 5905838 429455..429892 1 NC_010334.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 429892 5905838 Shal_0363 Shewanella halifaxensis HAW-EB4 D-tyrosyl-tRNA(Tyr) deacylase YP_001672598.1 429455 D 458817 CDS YP_001672599.1 167622305 5904803 complement(430407..430742) 1 NC_010334.1 PFAM: Rhodanese domain protein; KEGG: she:Shewmr4_0323 rhodanese domain protein; rhodanese domain-containing protein 430742 5904803 Shal_0365 Shewanella halifaxensis HAW-EB4 rhodanese domain-containing protein YP_001672599.1 430407 R 458817 CDS YP_001672600.1 167622306 5904804 complement(431309..432556) 1 NC_010334.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 432556 5904804 Shal_0366 Shewanella halifaxensis HAW-EB4 3-oxoacyl-(acyl carrier protein) synthase II YP_001672600.1 431309 R 458817 CDS YP_001672601.1 167622307 5905910 complement(432553..433278) 1 NC_010334.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 433278 fabG 5905910 fabG Shewanella halifaxensis HAW-EB4 3-ketoacyl-ACP reductase YP_001672601.1 432553 R 458817 CDS YP_001672602.1 167622308 5904739 complement(433388..433933) 1 NC_010334.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: sfr:Sfri_0339 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ 433933 5904739 Shal_0368 Shewanella halifaxensis HAW-EB4 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_001672602.1 433388 R 458817 CDS YP_001672603.1 167622309 5904740 complement(433902..435200) 1 NC_010334.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 435200 5904740 Shal_0369 Shewanella halifaxensis HAW-EB4 3-oxoacyl-ACP synthase YP_001672603.1 433902 R 458817 CDS YP_001672604.1 167622310 5907012 complement(435223..435885) 1 NC_010334.1 KEGG: shn:Shewana3_0330 hypothetical protein; hypothetical protein 435885 5907012 Shal_0370 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672604.1 435223 R 458817 CDS YP_001672605.1 167622311 5907013 complement(435873..437180) 1 NC_010334.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: shm:Shewmr7_3686 monooxygenase, FAD-binding protein; tryptophan halogenase 437180 5907013 Shal_0371 Shewanella halifaxensis HAW-EB4 tryptophan halogenase YP_001672605.1 435873 R 458817 CDS YP_001672606.1 167622312 5906729 complement(437167..439602) 1 NC_010334.1 KEGG: shw:Sputw3181_0291 hypothetical protein; hypothetical protein 439602 5906729 Shal_0372 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672606.1 437167 R 458817 CDS YP_001672607.1 167622313 5906497 complement(439608..440375) 1 NC_010334.1 KEGG: slo:Shew_3519 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 440375 5906497 Shal_0373 Shewanella halifaxensis HAW-EB4 outer membrane lipoprotein carrier protein LolA YP_001672607.1 439608 R 458817 CDS YP_001672608.1 167622314 5906498 complement(440372..440818) 1 NC_010334.1 KEGG: sfr:Sfri_0345 conserved hypothetical 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 440818 5906498 Shal_0374 Shewanella halifaxensis HAW-EB4 4-hydroxybenzoyl-CoA thioesterase YP_001672608.1 440372 R 458817 CDS YP_001672609.1 167622315 5905876 complement(441080..442642) 1 NC_010334.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: slo:Shew_3517 histidine ammonia-lyase; histidine ammonia-lyase 442642 5905876 Shal_0375 Shewanella halifaxensis HAW-EB4 histidine ammonia-lyase YP_001672609.1 441080 R 458817 CDS YP_001672610.1 167622316 5905877 complement(442639..444369) 1 NC_010334.1 PFAM: glycosyl transferase family 2; lipid A biosynthesis acyltransferase; KEGG: slo:Shew_3516 glycosyl transferase, family 2; glycosyl transferase family protein 444369 5905877 Shal_0376 Shewanella halifaxensis HAW-EB4 glycosyl transferase family protein YP_001672610.1 442639 R 458817 CDS YP_001672611.1 167622317 5906382 complement(444369..444755) 1 NC_010334.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: shn:Shewana3_0337 thioester dehydrase family protein; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ 444755 5906382 Shal_0377 Shewanella halifaxensis HAW-EB4 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_001672611.1 444369 R 458817 CDS YP_001672612.1 167622318 5905298 complement(444752..446131) 1 NC_010334.1 KEGG: slo:Shew_3514 hypothetical protein; hypothetical protein 446131 5905298 Shal_0378 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672612.1 444752 R 458817 CDS YP_001672613.1 167622319 5905299 complement(446128..446676) 1 NC_010334.1 KEGG: slo:Shew_3513 hypothetical protein; hypothetical protein 446676 5905299 Shal_0379 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672613.1 446128 R 458817 CDS YP_001672614.1 167622320 5904813 complement(446676..446924) 1 NC_010334.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 446924 5904813 Shal_0380 Shewanella halifaxensis HAW-EB4 acyl carrier protein YP_001672614.1 446676 R 458817 CDS YP_001672615.1 167622321 5904814 complement(446934..447188) 1 NC_010334.1 KEGG: slo:Shew_3511 acyl carrier protein, putative; acyl carrier protein 447188 5904814 Shal_0381 Shewanella halifaxensis HAW-EB4 acyl carrier protein YP_001672615.1 446934 R 458817 CDS YP_001672616.1 167622322 5906163 complement(447185..448003) 1 NC_010334.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: slo:Shew_3510 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 448003 5906163 Shal_0382 Shewanella halifaxensis HAW-EB4 phospholipid/glycerol acyltransferase YP_001672616.1 447185 R 458817 CDS YP_001672617.1 167622323 5906397 complement(447996..448733) 1 NC_010334.1 KEGG: shm:Shewmr7_3674 hypothetical protein; hypothetical protein 448733 5906397 Shal_0383 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672617.1 447996 R 458817 CDS YP_001672618.1 167622324 5906398 complement(448992..449858) 1 NC_010334.1 KEGG: slo:Shew_3508 hypothetical protein; hypothetical protein 449858 5906398 Shal_0384 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672618.1 448992 R 458817 CDS YP_001672619.1 167622325 5905400 complement(450002..452092) 1 NC_010334.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 452092 5905400 Shal_0385 Shewanella halifaxensis HAW-EB4 ATP-dependent DNA helicase RecG YP_001672619.1 450002 R 458817 CDS YP_001672620.1 167622326 5905401 complement(452235..453161) 1 NC_010334.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: shw:Sputw3181_3775 Na+/Ca+ antiporter, CaCA family; CaCA family Na(+)/Ca(+) antiporter 453161 5905401 Shal_0386 Shewanella halifaxensis HAW-EB4 CaCA family Na(+)/Ca(+) antiporter YP_001672620.1 452235 R 458817 CDS YP_001672621.1 167622327 5903428 complement(453340..454995) 1 NC_010334.1 PFAM: AMP-dependent synthetase and ligase; KEGG: slo:Shew_3502 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 454995 5903428 Shal_0387 Shewanella halifaxensis HAW-EB4 AMP-dependent synthetase and ligase YP_001672621.1 453340 R 458817 CDS YP_001672622.1 167622328 5903442 complement(455259..455945) 1 NC_010334.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 455945 5903442 Shal_0388 Shewanella halifaxensis HAW-EB4 tRNA guanosine-2'-O-methyltransferase YP_001672622.1 455259 R 458817 CDS YP_001672623.1 167622329 5903443 complement(456021..456404) 1 NC_010334.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: slo:Shew_3500 putative endoribonuclease L-PSP; putative endoribonuclease L-PSP 456404 5903443 Shal_0389 Shewanella halifaxensis HAW-EB4 putative endoribonuclease L-PSP YP_001672623.1 456021 R 458817 CDS YP_001672624.1 167622330 5903250 complement(456435..458540) 1 NC_010334.1 KEGG: slo:Shew_3499 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 458540 5903250 Shal_0390 Shewanella halifaxensis HAW-EB4 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_001672624.1 456435 R 458817 CDS YP_001672625.1 167622331 5903251 complement(458554..458835) 1 NC_010334.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 458835 rpoZ 5903251 rpoZ Shewanella halifaxensis HAW-EB4 DNA-directed RNA polymerase subunit omega YP_001672625.1 458554 R 458817 CDS YP_001672626.1 167622332 5903222 complement(458897..459556) 1 NC_010334.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 459556 gmk 5903222 gmk Shewanella halifaxensis HAW-EB4 guanylate kinase YP_001672626.1 458897 R 458817 CDS YP_001672627.1 167622333 5903223 459858..460988 1 NC_010334.1 KEGG: slo:Shew_3496 hypothetical protein; hypothetical protein 460988 5903223 Shal_0393 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672627.1 459858 D 458817 CDS YP_001672628.1 167622334 5904653 461132..462037 1 NC_010334.1 KEGG: shm:Shewmr7_0332 hypothetical protein; hypothetical protein 462037 5904653 Shal_0394 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672628.1 461132 D 458817 CDS YP_001672629.1 167622335 5904654 462129..463199 1 NC_010334.1 PFAM: aminoglycoside phosphotransferase; KEGG: sbm:Shew185_0356 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 463199 5904654 Shal_0395 Shewanella halifaxensis HAW-EB4 aminoglycoside phosphotransferase YP_001672629.1 462129 D 458817 CDS YP_001672630.1 167622336 5903311 463660..464946 1 NC_010334.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: slo:Shew_3493 acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase/transferase 464946 5903311 Shal_0396 Shewanella halifaxensis HAW-EB4 acetyl-CoA hydrolase/transferase YP_001672630.1 463660 D 458817 CDS YP_001672631.1 167622337 5903312 complement(465034..465732) 1 NC_010334.1 PFAM: protein of unknown function DUF159; KEGG: maq:Maqu_3372 protein of unknown function DUF159; hypothetical protein 465732 5903312 Shal_0397 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672631.1 465034 R 458817 CDS YP_001672632.1 167622338 5903433 465927..467195 1 NC_010334.1 PFAM: amidohydrolase; KEGG: vha:VIBHAR_06184 hypothetical protein; amidohydrolase 467195 5903433 Shal_0398 Shewanella halifaxensis HAW-EB4 amidohydrolase YP_001672632.1 465927 D 458817 CDS YP_001672633.1 167622339 5903323 467410..468852 1 NC_010334.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: ppr:PBPRB0277 hypothetical amino acid decarboxylase; pyridoxal-dependent decarboxylase 468852 5903323 Shal_0399 Shewanella halifaxensis HAW-EB4 pyridoxal-dependent decarboxylase YP_001672633.1 467410 D 458817 CDS YP_001672634.1 167622340 5903324 468890..469324 1 NC_010334.1 KEGG: ppr:PBPRB1867 hypothetical protein; hypothetical protein 469324 5903324 Shal_0400 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672634.1 468890 D 458817 CDS YP_001672635.1 167622341 5904215 complement(469485..470939) 1 NC_010334.1 PFAM: permease; KEGG: mbb:BCG_2984 putative integral membrane protein; permease 470939 5904215 Shal_0401 Shewanella halifaxensis HAW-EB4 permease YP_001672635.1 469485 R 458817 CDS YP_001672636.1 167622342 5904216 complement(471098..471766) 1 NC_010334.1 PFAM: ERCC4 domain protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: spc:Sputcn32_3619 ERCC4 domain protein; ERCC4 domain-containing protein 471766 5904216 Shal_0402 Shewanella halifaxensis HAW-EB4 ERCC4 domain-containing protein YP_001672636.1 471098 R 458817 CDS YP_001672637.1 167622343 5903269 complement(472030..472743) 1 NC_010334.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: sfr:Sfri_3126 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 472743 5903269 Shal_0403 Shewanella halifaxensis HAW-EB4 cytoplasmic chaperone TorD family protein YP_001672637.1 472030 R 458817 CDS YP_001672638.1 167622344 5903270 complement(472769..475192) 1 NC_010334.1 TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ent:Ent638_1418 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; anaerobic dimethyl sulfoxide reductase subunit A 475192 5903270 Shal_0404 Shewanella halifaxensis HAW-EB4 anaerobic dimethyl sulfoxide reductase subunit A YP_001672638.1 472769 R 458817 CDS YP_001672639.1 167622345 5903252 complement(475223..476062) 1 NC_010334.1 KEGG: stm:STM4307 putative anaerobic dimethyl sulfoxide reductase, subunit C; putative anaerobic dimethyl sulfoxide reductase subunit C 476062 5903252 Shal_0405 Shewanella halifaxensis HAW-EB4 putative anaerobic dimethyl sulfoxide reductase subunit C YP_001672639.1 475223 R 458817 CDS YP_001672640.1 167622346 5903253 complement(476065..476688) 1 NC_010334.1 TIGRFAM: Dimethylsulfoxide reductase chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vfi:VFA0081 anaerobic dimethyl sulfoxide reductase chain B; dimethylsulfoxide reductase chain B 476688 5903253 Shal_0406 Shewanella halifaxensis HAW-EB4 dimethylsulfoxide reductase chain B YP_001672640.1 476065 R 458817 CDS YP_001672641.1 167622347 5902774 complement(476840..477514) 1 NC_010334.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: spc:Sputcn32_0666 response regulator receiver protein; two component LuxR family transcriptional regulator 477514 5902774 Shal_0407 Shewanella halifaxensis HAW-EB4 two component LuxR family transcriptional regulator YP_001672641.1 476840 R 458817 CDS YP_001672642.1 167622348 5902775 complement(477495..479276) 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ppr:PBPRB0007 hypothetical histidine kinase; histidine kinase 479276 5902775 Shal_0408 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001672642.1 477495 R 458817 CDS YP_001672643.1 167622349 5903262 complement(479557..480678) 1 NC_010334.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rca:Rcas_3855 mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein 480678 5903262 Shal_0409 Shewanella halifaxensis HAW-EB4 mandelate racemase/muconate lactonizing protein YP_001672643.1 479557 R 458817 CDS YP_001672644.1 167622350 5904833 complement(480682..482274) 1 NC_010334.1 member of the betaine, carnitine, choline transporter (BCCT) family; unknown function; putative transporter 482274 5904833 Shal_0410 Shewanella halifaxensis HAW-EB4 putative transporter YP_001672644.1 480682 R 458817 CDS YP_001672645.1 167622351 5904834 482797..483132 1 NC_010334.1 KEGG: cdf:CD3003 probable carbohydrate hydrolase (N-terminus); putative carbohydrate hydrolase (N-terminus) 483132 5904834 Shal_0411 Shewanella halifaxensis HAW-EB4 putative carbohydrate hydrolase (N-terminus) YP_001672645.1 482797 D 458817 CDS YP_001672646.1 167622352 5904877 483129..484310 1 NC_010334.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: cdf:CD3002 probable carbohydrate hydrolase; D-galactarate dehydratase/Altronate hydrolase domain-containing protein 484310 5904877 Shal_0412 Shewanella halifaxensis HAW-EB4 D-galactarate dehydratase/Altronate hydrolase domain-containing protein YP_001672646.1 483129 D 458817 CDS YP_001672647.1 167622353 5904878 484396..485298 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_C7696 transcriptional regulator, LysR family; LysR family transcriptional regulator 485298 5904878 Shal_0413 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672647.1 484396 D 458817 CDS YP_001672648.1 167622354 5904775 485367..486035 1 NC_010334.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reu:Reut_B4119 regulatory protein GntR, HTH:GntR, C-terminal; GntR family transcriptional regulator 486035 5904775 Shal_0414 Shewanella halifaxensis HAW-EB4 GntR family transcriptional regulator YP_001672648.1 485367 D 458817 CDS YP_001672649.1 167622355 5904776 complement(486132..487418) 1 NC_010334.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dsy:DSY4261 hypothetical protein; ammonium transporter 487418 5904776 Shal_0415 Shewanella halifaxensis HAW-EB4 ammonium transporter YP_001672649.1 486132 R 458817 CDS YP_001672650.1 167622356 5904935 complement(487711..488979) 1 NC_010334.1 TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: son:SO_3706 NupC family protein; nucleoside transporter 488979 5904935 Shal_0416 Shewanella halifaxensis HAW-EB4 nucleoside transporter YP_001672650.1 487711 R 458817 CDS YP_001672651.1 167622357 5904936 complement(489231..490070) 1 NC_010334.1 PFAM: purine or other phosphorylase family 1; KEGG: son:SO_3705 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase, putative; purine phosphorylase family 1 490070 5904936 Shal_0417 Shewanella halifaxensis HAW-EB4 purine phosphorylase family 1 YP_001672651.1 489231 R 458817 CDS YP_001672652.1 167622358 5905027 complement(490530..493748) 1 NC_010334.1 PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cps:CPS_3374 putative helicase; type III restriction protein res subunit 493748 5905027 Shal_0418 Shewanella halifaxensis HAW-EB4 type III restriction protein res subunit YP_001672652.1 490530 R 458817 CDS YP_001672653.1 167622359 5905028 complement(494094..495401) 1 NC_010334.1 PFAM: HipA domain protein; KEGG: sbm:Shew185_0650 HipA domain protein; HipA domain-containing protein 495401 5905028 Shal_0419 Shewanella halifaxensis HAW-EB4 HipA domain-containing protein YP_001672653.1 494094 R 458817 CDS YP_001672654.1 167622360 5905041 complement(495388..495636) 1 NC_010334.1 PFAM: helix-turn-helix domain protein; KEGG: slo:Shew_0478 transcriptional regulator, XRE family; XRE family transcriptional regulator 495636 5905041 Shal_0420 Shewanella halifaxensis HAW-EB4 XRE family transcriptional regulator YP_001672654.1 495388 R 458817 CDS YP_001672655.1 167622361 5905091 complement(496113..496976) 1 NC_010334.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: slo:Shew_3489 YicC N-terminal domain protein; hypothetical protein 496976 5905091 Shal_0421 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672655.1 496113 R 458817 CDS YP_001672656.1 167622362 5905092 497250..497963 1 NC_010334.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 497963 rph 5905092 rph Shewanella halifaxensis HAW-EB4 ribonuclease PH YP_001672656.1 497250 D 458817 CDS YP_001672657.1 167622363 5905242 498083..498724 1 NC_010334.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 498724 pyrE 5905242 pyrE Shewanella halifaxensis HAW-EB4 orotate phosphoribosyltransferase YP_001672657.1 498083 D 458817 CDS YP_001672658.1 167622364 5905243 complement(499051..499710) 1 NC_010334.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 499710 folE 5905243 folE Shewanella halifaxensis HAW-EB4 GTP cyclohydrolase I YP_001672658.1 499051 R 458817 CDS YP_001672659.1 167622365 5905260 complement(499947..501911) 1 NC_010334.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: slo:Shew_3485 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 501911 5905260 Shal_0425 Shewanella halifaxensis HAW-EB4 peptidase S9 prolyl oligopeptidase YP_001672659.1 499947 R 458817 CDS YP_001672660.1 167622366 5905261 complement(502045..502638) 1 NC_010334.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 502638 slmA 5905261 slmA Shewanella halifaxensis HAW-EB4 nucleoid occlusion protein YP_001672660.1 502045 R 458817 CDS YP_001672661.1 167622367 5905350 complement(502739..503197) 1 NC_010334.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 503197 dut 5905350 dut Shewanella halifaxensis HAW-EB4 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001672661.1 502739 R 458817 CDS YP_001672662.1 167622368 5905351 complement(503197..504390) 1 NC_010334.1 KEGG: sfr:Sfri_3829 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 504390 5905351 Shal_0428 Shewanella halifaxensis HAW-EB4 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_001672662.1 503197 R 458817 CDS YP_001672663.1 167622369 5904282 504539..505216 1 NC_010334.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 505216 radC 5904282 radC Shewanella halifaxensis HAW-EB4 DNA repair protein RadC YP_001672663.1 504539 D 458817 CDS YP_001672664.1 167622370 5904283 505345..505581 1 NC_010334.1 required for 70S ribosome assembly; 50S ribosomal protein L28 505581 rpmB 5904283 rpmB Shewanella halifaxensis HAW-EB4 50S ribosomal protein L28 YP_001672664.1 505345 D 458817 CDS YP_001672665.1 167622371 5905313 505588..505761 1 NC_010334.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 505761 rpmG 5905313 rpmG Shewanella halifaxensis HAW-EB4 50S ribosomal protein L33 YP_001672665.1 505588 D 458817 CDS YP_001672666.1 167622372 5905385 506236..507558 1 NC_010334.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 507558 5905385 Shal_0432 Shewanella halifaxensis HAW-EB4 N-acetylglutamate synthase YP_001672666.1 506236 D 458817 CDS YP_001672667.1 167622373 5905386 507652..508158 1 NC_010334.1 KEGG: shw:Sputw3181_0369 hypothetical protein; hypothetical protein 508158 5905386 Shal_0433 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672667.1 507652 D 458817 CDS YP_001672668.1 167622374 5905807 complement(508207..509094) 1 NC_010334.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: shw:Sputw3181_0370 RarD protein, DMT superfamily transporter; transporter DMT superfamily protein 509094 5905807 Shal_0434 Shewanella halifaxensis HAW-EB4 transporter DMT superfamily protein YP_001672668.1 508207 R 458817 CDS YP_001672669.1 167622375 5905808 complement(509260..509724) 1 NC_010334.1 PFAM: thioesterase superfamily protein; KEGG: son:SO_4242 hypothetical protein; hypothetical protein 509724 5905808 Shal_0435 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672669.1 509260 R 458817 CDS YP_001672670.1 167622376 5905728 509886..511709 1 NC_010334.1 KEGG: shw:Sputw3181_0372 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 511709 5905728 Shal_0436 Shewanella halifaxensis HAW-EB4 ATP-dependent DNA helicase RecQ YP_001672670.1 509886 D 458817 CDS YP_001672671.1 167622377 5905729 complement(512014..513795) 1 NC_010334.1 KEGG: slo:Shew_3473 response regulator receiver protein; response regulator receiver protein 513795 5905729 Shal_0437 Shewanella halifaxensis HAW-EB4 response regulator receiver protein YP_001672671.1 512014 R 458817 CDS YP_001672672.1 167622378 5905667 514383..515954 1 NC_010334.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 515954 5905667 Shal_0438 Shewanella halifaxensis HAW-EB4 2-isopropylmalate synthase YP_001672672.1 514383 D 458817 CDS YP_001672673.1 167622379 5905668 516033..517127 1 NC_010334.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 517127 5905668 Shal_0439 Shewanella halifaxensis HAW-EB4 3-isopropylmalate dehydrogenase YP_001672673.1 516033 D 458817 CDS YP_001672674.1 167622380 5905823 517130..518530 1 NC_010334.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 518530 5905823 Shal_0440 Shewanella halifaxensis HAW-EB4 isopropylmalate isomerase large subunit YP_001672674.1 517130 D 458817 CDS YP_001672675.1 167622381 5905824 518540..519145 1 NC_010334.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 519145 leuD 5905824 leuD Shewanella halifaxensis HAW-EB4 isopropylmalate isomerase small subunit YP_001672675.1 518540 D 458817 CDS YP_001672676.1 167622382 5906250 519659..520945 1 NC_010334.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO_4232 long-chain fatty acid transport protein; aromatic hydrocarbon degradation membrane protein 520945 5906250 Shal_0442 Shewanella halifaxensis HAW-EB4 aromatic hydrocarbon degradation membrane protein YP_001672676.1 519659 D 458817 CDS YP_001672677.1 167622383 5905630 521230..521766 1 NC_010334.1 KEGG: slo:Shew_3467 hypothetical protein; hypothetical protein 521766 5905630 Shal_0443 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672677.1 521230 D 458817 CDS YP_001672678.1 167622384 5905631 521778..523259 1 NC_010334.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: slo:Shew_3466 glycerol kinase; glycerol kinase 523259 5905631 Shal_0444 Shewanella halifaxensis HAW-EB4 glycerol kinase YP_001672678.1 521778 D 458817 CDS YP_001672679.1 167622385 5905684 complement(523288..523752) 1 NC_010334.1 KEGG: slo:Shew_3465 hypothetical protein; hypothetical protein 523752 5905684 Shal_0445 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672679.1 523288 R 458817 CDS YP_001672680.1 167622386 5905685 524257..524715 1 NC_010334.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 524715 5905685 Shal_0446 Shewanella halifaxensis HAW-EB4 cell division protein MraZ YP_001672680.1 524257 D 458817 CDS YP_001672681.1 167622387 5906974 524745..525692 1 NC_010334.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: slo:Shew_3461 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 525692 mraW 5906974 mraW Shewanella halifaxensis HAW-EB4 S-adenosyl-methyltransferase MraW YP_001672681.1 524745 D 458817 CDS YP_001672682.1 167622388 5906975 525710..526024 1 NC_010334.1 PFAM: cell division protein FtsL; KEGG: slo:Shew_3460 cell division protein FtsL; cell division protein FtsL 526024 5906975 Shal_0448 Shewanella halifaxensis HAW-EB4 cell division protein FtsL YP_001672682.1 525710 D 458817 CDS YP_001672683.1 167622389 5906903 526021..527757 1 NC_010334.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: slo:Shew_3459 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 527757 5906903 Shal_0449 Shewanella halifaxensis HAW-EB4 peptidoglycan glycosyltransferase YP_001672683.1 526021 D 458817 CDS YP_001672684.1 167622390 5906904 527757..529223 1 NC_010334.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 529223 murE 5906904 murE Shewanella halifaxensis HAW-EB4 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001672684.1 527757 D 458817 CDS YP_001672685.1 167622391 5906800 529220..530599 1 NC_010334.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: slo:Shew_3457 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 530599 5906800 Shal_0451 Shewanella halifaxensis HAW-EB4 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_001672685.1 529220 D 458817 CDS YP_001672686.1 167622392 5906801 530599..531681 1 NC_010334.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 531681 mraY 5906801 mraY Shewanella halifaxensis HAW-EB4 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001672686.1 530599 D 458817 CDS YP_001672687.1 167622393 5906793 531711..533030 1 NC_010334.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 533030 murD 5906793 murD Shewanella halifaxensis HAW-EB4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001672687.1 531711 D 458817 CDS YP_001672688.1 167622394 5906794 533020..534240 1 NC_010334.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: slo:Shew_3454 cell division protein FtsW; cell division protein FtsW 534240 5906794 Shal_0454 Shewanella halifaxensis HAW-EB4 cell division protein FtsW YP_001672688.1 533020 D 458817 CDS YP_001672689.1 167622395 5906795 534249..535346 1 NC_010334.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 535346 murG 5906795 murG Shewanella halifaxensis HAW-EB4 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001672689.1 534249 D 458817 CDS YP_001672690.1 167622396 5906551 535348..536817 1 NC_010334.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 536817 murC 5906551 murC Shewanella halifaxensis HAW-EB4 UDP-N-acetylmuramate--L-alanine ligase YP_001672690.1 535348 D 458817 CDS YP_001672691.1 167622397 5906552 536923..537687 1 NC_010334.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: slo:Shew_3451 polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein 537687 5906552 Shal_0457 Shewanella halifaxensis HAW-EB4 polypeptide-transport-associated domain-containing protein YP_001672691.1 536923 D 458817 CDS YP_001672692.1 167622398 5906333 537691..538926 1 NC_010334.1 PFAM: cell division protein FtsA; KEGG: slo:Shew_3450 cell division protein FtsA; cell division protein FtsA 538926 5906333 Shal_0458 Shewanella halifaxensis HAW-EB4 cell division protein FtsA YP_001672692.1 537691 D 458817 CDS YP_001672693.1 167622399 5906334 538958..540145 1 NC_010334.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 540145 5906334 Shal_0459 Shewanella halifaxensis HAW-EB4 cell division protein FtsZ YP_001672693.1 538958 D 458817 CDS YP_001672694.1 167622400 5906319 540323..541243 1 NC_010334.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 541243 lpxC 5906319 lpxC Shewanella halifaxensis HAW-EB4 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_001672694.1 540323 D 458817 CDS YP_001672695.1 167622401 5906320 complement(541251..541703) 1 NC_010334.1 KEGG: slo:Shew_3447 hypothetical protein; hypothetical protein 541703 5906320 Shal_0461 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672695.1 541251 R 458817 CDS YP_001672696.1 167622402 5906223 541731..542630 1 NC_010334.1 PFAM: peptidase M23B; KEGG: slo:Shew_3446 peptidase M23B; peptidase M23B 542630 5906223 Shal_0462 Shewanella halifaxensis HAW-EB4 peptidase M23B YP_001672696.1 541731 D 458817 CDS YP_001672697.1 167622403 5906224 542691..545414 1 NC_010334.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 545414 5906224 Shal_0463 Shewanella halifaxensis HAW-EB4 preprotein translocase subunit SecA YP_001672697.1 542691 D 458817 CDS YP_001672698.1 167622404 5906308 complement(552397..552786) 1 NC_010334.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: sbm:Shew185_3948 mutator MutT protein; mutator MutT protein 552786 5906308 Shal_0464 Shewanella halifaxensis HAW-EB4 mutator MutT protein YP_001672698.1 552397 R 458817 CDS YP_001672699.1 167622405 5906235 complement(552783..553022) 1 NC_010334.1 PFAM: protein of unknown function DUF329; KEGG: slo:Shew_3443 protein of unknown function DUF329; hypothetical protein 553022 5906235 Shal_0465 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672699.1 552783 R 458817 CDS YP_001672700.1 167622406 5906236 complement(553082..553816) 1 NC_010334.1 PFAM: protein of unknown function DUF1342; KEGG: slo:Shew_3442 protein of unknown function DUF1342; hypothetical protein 553816 5906236 Shal_0466 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672700.1 553082 R 458817 CDS YP_001672701.1 167622407 5906233 complement(553825..554430) 1 NC_010334.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 554430 coaE 5906233 coaE Shewanella halifaxensis HAW-EB4 dephospho-CoA kinase YP_001672701.1 553825 R 458817 CDS YP_001672702.1 167622408 5906234 complement(554459..555370) 1 NC_010334.1 PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: sbm:Shew185_3944 prepilin peptidase; prepilin peptidase 555370 5906234 Shal_0468 Shewanella halifaxensis HAW-EB4 prepilin peptidase YP_001672702.1 554459 R 458817 CDS YP_001672703.1 167622409 5906216 complement(555448..556710) 1 NC_010334.1 PFAM: type II secretion system protein; KEGG: sfr:Sfri_3784 type II secretion system protein; type II secretion system protein 556710 5906216 Shal_0469 Shewanella halifaxensis HAW-EB4 type II secretion system protein YP_001672703.1 555448 R 458817 CDS YP_001672704.1 167622410 5906217 complement(556756..558462) 1 NC_010334.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: slo:Shew_3438 type IV-A pilus assembly ATPase PilB; type IV-A pilus assembly ATPase PilB 558462 5906217 Shal_0470 Shewanella halifaxensis HAW-EB4 type IV-A pilus assembly ATPase PilB YP_001672704.1 556756 R 458817 CDS YP_001672705.1 167622411 5906178 complement(558537..558989) 1 NC_010334.1 KEGG: pha:PSHAa0384 prepilin peptidase dependent protein D; prepilin peptidase dependent protein D 558989 5906178 Shal_0471 Shewanella halifaxensis HAW-EB4 prepilin peptidase dependent protein D YP_001672705.1 558537 R 458817 CDS YP_001672706.1 167622412 5906179 complement(559772..560656) 1 NC_010334.1 KEGG: shn:Shewana3_0422 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 560656 5906179 Shal_0472 Shewanella halifaxensis HAW-EB4 nicotinate-nucleotide pyrophosphorylase YP_001672706.1 559772 R 458817 CDS YP_001672707.1 167622413 5905360 560903..561445 1 NC_010334.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: slo:Shew_3434 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; N-acetyl-anhydromuranmyl-L-alanine amidase 561445 5905360 Shal_0473 Shewanella halifaxensis HAW-EB4 N-acetyl-anhydromuranmyl-L-alanine amidase YP_001672707.1 560903 D 458817 CDS YP_001672708.1 167622414 5905266 561542..562393 1 NC_010334.1 involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 562393 5905266 Shal_0474 Shewanella halifaxensis HAW-EB4 regulatory protein AmpE YP_001672708.1 561542 D 458817 CDS YP_001672709.1 167622415 5905267 562753..563505 1 NC_010334.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 563505 pdhR 5905267 pdhR Shewanella halifaxensis HAW-EB4 transcriptional regulator PdhR YP_001672709.1 562753 D 458817 CDS YP_001672710.1 167622416 5904355 563572..566235 1 NC_010334.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 566235 aceE 5904355 aceE Shewanella halifaxensis HAW-EB4 pyruvate dehydrogenase subunit E1 YP_001672710.1 563572 D 458817 CDS YP_001672711.1 167622417 5904356 566248..567915 1 NC_010334.1 KEGG: sfr:Sfri_3776 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 567915 5904356 Shal_0477 Shewanella halifaxensis HAW-EB4 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_001672711.1 566248 D 458817 CDS YP_001672712.1 167622418 5904424 568136..569563 1 NC_010334.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 569563 5904424 Shal_0478 Shewanella halifaxensis HAW-EB4 dihydrolipoamide dehydrogenase YP_001672712.1 568136 D 458817 CDS YP_001672713.1 167622419 5904425 569720..574183 1 NC_010334.1 KEGG: slo:Shew_3428 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 574183 5904425 Shal_0479 Shewanella halifaxensis HAW-EB4 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001672713.1 569720 D 458817 CDS YP_001672714.1 167622420 5906138 574277..576493 1 NC_010334.1 PFAM: Patatin; surface antigen variable number repeat protein; KEGG: she:Shewmr4_0432 patatin; patatin 576493 5906138 Shal_0480 Shewanella halifaxensis HAW-EB4 patatin YP_001672714.1 574277 D 458817 CDS YP_001672715.1 167622421 5906469 complement(576654..577319) 1 NC_010334.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 577319 5906469 Shal_0481 Shewanella halifaxensis HAW-EB4 2-deoxyglucose-6-phosphatase YP_001672715.1 576654 R 458817 CDS YP_001672716.1 167622422 5906470 577723..580320 1 NC_010334.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 580320 5906470 Shal_0482 Shewanella halifaxensis HAW-EB4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_001672716.1 577723 D 458817 CDS YP_001672717.1 167622423 5906545 complement(580452..580919) 1 NC_010334.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 580919 5906545 Shal_0483 Shewanella halifaxensis HAW-EB4 anti-RNA polymerase sigma 70 factor YP_001672717.1 580452 R 458817 CDS YP_001672718.1 167622424 5906546 581451..582515 1 NC_010334.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 582515 hemE 5906546 hemE Shewanella halifaxensis HAW-EB4 uroporphyrinogen decarboxylase YP_001672718.1 581451 D 458817 CDS YP_001672719.1 167622425 5907000 582852..585419 1 NC_010334.1 KEGG: slo:Shew_3416 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 585419 5907000 Shal_0485 Shewanella halifaxensis HAW-EB4 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001672719.1 582852 D 458817 CDS YP_001672720.1 167622426 5907001 complement(585409..585627) 1 NC_010334.1 KEGG: shn:Shewana3_0438 hypothetical protein; hypothetical protein 585627 5907001 Shal_0486 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672720.1 585409 R 458817 CDS YP_001672721.1 167622427 5905087 complement(585995..587296) 1 NC_010334.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 587296 5905087 Shal_0487 Shewanella halifaxensis HAW-EB4 phosphoribosylamine--glycine ligase YP_001672721.1 585995 R 458817 CDS YP_001672722.1 167622428 5904319 complement(587494..589083) 1 NC_010334.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 589083 purH 5904319 purH Shewanella halifaxensis HAW-EB4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001672722.1 587494 R 458817 CDS YP_001672723.1 167622429 5904320 589431..589946 1 NC_010334.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 589946 zntR 5904320 zntR Shewanella halifaxensis HAW-EB4 zinc-responsive transcriptional regulator YP_001672723.1 589431 D 458817 CDS YP_001672724.1 167622430 5904682 589949..591298 1 NC_010334.1 PFAM: permease; KEGG: slo:Shew_3410 permease; permease 591298 5904682 Shal_0490 Shewanella halifaxensis HAW-EB4 permease YP_001672724.1 589949 D 458817 CDS YP_001672725.1 167622431 5904683 591473..592141 1 NC_010334.1 PFAM: DSBA oxidoreductase; KEGG: maq:Maqu_3568 DsbA oxidoreductase; DSBA oxidoreductase 592141 5904683 Shal_0491 Shewanella halifaxensis HAW-EB4 DSBA oxidoreductase YP_001672725.1 591473 D 458817 CDS YP_001672726.1 167622432 5904931 592862..593443 1 NC_010334.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: sbm:Shew185_0099 molybdopterin oxidoreductase Fe4s4 region; molybdopterin oxidoreductase Fe4S4 region 593443 5904931 Shal_0492 Shewanella halifaxensis HAW-EB4 molybdopterin oxidoreductase Fe4S4 region YP_001672726.1 592862 D 458817 CDS YP_001672727.1 167622433 5903190 593492..595879 1 NC_010334.1 KEGG: sbm:Shew185_0099 molybdopterin oxidoreductase Fe4s4 region; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 595879 5903190 Shal_0493 Shewanella halifaxensis HAW-EB4 formate dehydrogenase subunit alpha YP_001672727.1 593492 D 458817 CDS YP_001672728.1 167622434 5903191 595882..596784 1 NC_010334.1 TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: sbm:Shew185_0101 formate dehydrogenase, beta subunit; formate dehydrogenase subunit beta 596784 5903191 Shal_0494 Shewanella halifaxensis HAW-EB4 formate dehydrogenase subunit beta YP_001672728.1 595882 D 458817 CDS YP_001672729.1 167622435 5904815 596790..597434 1 NC_010334.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: she:Shewmr4_0104 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 597434 5904815 Shal_0495 Shewanella halifaxensis HAW-EB4 formate dehydrogenase subunit gamma YP_001672729.1 596790 D 458817 CDS YP_001672730.1 167622436 5904816 597437..598417 1 NC_010334.1 TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: son:SO_0104 fdhE protein; formate dehydrogenase accessory protein FdhE 598417 5904816 Shal_0496 Shewanella halifaxensis HAW-EB4 formate dehydrogenase accessory protein FdhE YP_001672730.1 597437 D 458817 CDS YP_001672731.1 167622437 5905895 598563..600011 1 NC_010334.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 600011 5905895 Shal_0497 Shewanella halifaxensis HAW-EB4 selenocysteine synthase YP_001672731.1 598563 D 458817 CDS YP_001672732.1 167622438 5905896 600008..601924 1 NC_010334.1 TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 3; KEGG: she:Shewmr4_0107 selenocysteine-specific translation elongation factor; selenocysteine-specific translation elongation factor 601924 5905896 Shal_0498 Shewanella halifaxensis HAW-EB4 selenocysteine-specific translation elongation factor YP_001672732.1 600008 D 458817 CDS YP_001672733.1 167622439 5905691 602282..603145 1 NC_010334.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 603145 5905691 Shal_0499 Shewanella halifaxensis HAW-EB4 formate dehydrogenase accessory protein YP_001672733.1 602282 D 458817 CDS YP_001672734.1 167622440 5906987 603217..604458 1 NC_010334.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: sbm:Shew185_0107 protein of unknown function DUF395 YeeE/YedE; putative inner membrane protein 604458 5906987 Shal_0500 Shewanella halifaxensis HAW-EB4 putative inner membrane protein YP_001672734.1 603217 D 458817 CDS YP_001672735.1 167622441 5906988 604534..604770 1 NC_010334.1 PFAM: SirA family protein; KEGG: ypi:YpsIP31758_3809 hypothetical protein; hypothetical protein 604770 5906988 Shal_0501 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672735.1 604534 D 458817 CDS YP_001672736.1 167622442 5905922 complement(604869..605597) 1 NC_010334.1 PFAM: protein of unknown function DUF28; KEGG: slo:Shew_3408 protein of unknown function DUF28; hypothetical protein 605597 5905922 Shal_0502 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672736.1 604869 R 458817 CDS YP_001672737.1 167622443 5905923 606401..608467 1 NC_010334.1 KEGG: slo:Shew_2580 hypothetical protein; hypothetical protein 608467 5905923 Shal_0503 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672737.1 606401 D 458817 CDS YP_001672738.1 167622444 5905579 complement(608594..609541) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbm:Shew185_3844 transcriptional regulator, LysR family; LysR family transcriptional regulator 609541 5905579 Shal_0504 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672738.1 608594 R 458817 CDS YP_001672739.1 167622445 5905463 609636..610709 1 NC_010334.1 PFAM: secretion protein HlyD family protein; KEGG: sbm:Shew185_3843 secretion protein HlyD family protein; secretion protein HlyD family protein 610709 5905463 Shal_0505 Shewanella halifaxensis HAW-EB4 secretion protein HlyD family protein YP_001672739.1 609636 D 458817 CDS YP_001672740.1 167622446 5905464 610709..612298 1 NC_010334.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_0523 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter 612298 5905464 Shal_0506 Shewanella halifaxensis HAW-EB4 EmrB/QacA family drug resistance transporter YP_001672740.1 610709 D 458817 CDS YP_001672741.1 167622447 5903676 612455..612913 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_3397 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 612913 5903676 Shal_0507 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001672741.1 612455 D 458817 CDS YP_001672742.1 167622448 5903677 complement(612991..613242) 1 NC_010334.1 KEGG: slo:Shew_3396 hypothetical protein; hypothetical protein 613242 5903677 Shal_0508 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672742.1 612991 R 458817 CDS YP_001672743.1 167622449 5904055 613404..613520 1 NC_010334.1 KEGG: sfr:Sfri_3496 hypothetical protein; hypothetical protein 613520 5904055 Shal_0509 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672743.1 613404 D 458817 CDS YP_001672744.1 167622450 5904015 613638..615047 1 NC_010334.1 KEGG: sfr:Sfri_3495 phage integrase family protein; phage integrase family protein 615047 5904015 Shal_0510 Shewanella halifaxensis HAW-EB4 phage integrase family protein YP_001672744.1 613638 D 458817 CDS YP_001672745.1 167622451 5904016 615040..618558 1 NC_010334.1 PFAM: integrase family protein; KEGG: sfr:Sfri_3494 phage integrase family protein; integrase family protein 618558 5904016 Shal_0511 Shewanella halifaxensis HAW-EB4 integrase family protein YP_001672745.1 615040 D 458817 CDS YP_001672746.1 167622452 5903870 618555..619193 1 NC_010334.1 KEGG: sfr:Sfri_3493 hypothetical protein; hypothetical protein 619193 5903870 Shal_0512 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672746.1 618555 D 458817 CDS YP_001672747.1 167622453 5903871 complement(619550..619957) 1 NC_010334.1 hypothetical protein 619957 5903871 Shal_0513 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672747.1 619550 R 458817 CDS YP_001672748.1 167622454 5903844 complement(620220..621074) 1 NC_010334.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: mms:mma_0801 RNA-directed DNA polymerase; RNA-directed DNA polymerase 621074 5903844 Shal_0514 Shewanella halifaxensis HAW-EB4 RNA-directed DNA polymerase YP_001672748.1 620220 R 458817 CDS YP_001672749.1 167622455 5903845 complement(621748..622620) 1 NC_010334.1 KEGG: reu:Reut_A0005 hypothetical protein; hypothetical protein 622620 5903845 Shal_0515 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672749.1 621748 R 458817 CDS YP_001672750.1 167622456 5903774 622764..624056 1 NC_010334.1 KEGG: vei:Veis_1180 hypothetical protein; hypothetical protein 624056 5903774 Shal_0516 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672750.1 622764 D 458817 CDS YP_001672751.1 167622457 5903737 624205..625347 1 NC_010334.1 KEGG: vei:Veis_1181 RNA-directed DNA polymerase; RNA-directed DNA polymerase 625347 5903737 Shal_0517 Shewanella halifaxensis HAW-EB4 RNA-directed DNA polymerase YP_001672751.1 624205 D 458817 CDS YP_001672752.1 167622458 5903738 complement(625443..625997) 1 NC_010334.1 KEGG: aav:Aave_1701 hypothetical protein; hypothetical protein 625997 5903738 Shal_0518 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672752.1 625443 R 458817 CDS YP_001672753.1 167622459 5903811 complement(626708..626914) 1 NC_010334.1 PFAM: helix-turn-helix domain protein; KEGG: sfr:Sfri_3420 transcriptional regulator, XRE family protein; XRE family transcriptional regulator 626914 5903811 Shal_0519 Shewanella halifaxensis HAW-EB4 XRE family transcriptional regulator YP_001672753.1 626708 R 458817 CDS YP_001672754.1 167622460 5903812 627047..627586 1 NC_010334.1 KEGG: sfr:Sfri_3419 hypothetical protein; hypothetical protein 627586 5903812 Shal_0520 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672754.1 627047 D 458817 CDS YP_001672755.1 167622461 5904139 627591..629000 1 NC_010334.1 PFAM: helicase domain protein; type III restriction protein res subunit; KEGG: sfr:Sfri_3418 type III restriction enzyme, res subunit; type III restriction protein res subunit 629000 5904139 Shal_0521 Shewanella halifaxensis HAW-EB4 type III restriction protein res subunit YP_001672755.1 627591 D 458817 CDS YP_001672756.1 167622462 5904140 complement(629102..632233) 1 NC_010334.1 KEGG: chu:CHU_0040 ATPase involved in DNA repair; DNA repair ATPase-like protein 632233 5904140 Shal_0522 Shewanella halifaxensis HAW-EB4 DNA repair ATPase-like protein YP_001672756.1 629102 R 458817 CDS YP_001672757.1 167622463 5904056 complement(632223..632762) 1 NC_010334.1 hypothetical protein 632762 5904056 Shal_0523 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672757.1 632223 R 458817 CDS YP_001672758.1 167622464 5903682 complement(632746..634089) 1 NC_010334.1 KEGG: sun:SUN_0730 hypothetical protein; hypothetical protein 634089 5903682 Shal_0524 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672758.1 632746 R 458817 CDS YP_001672759.1 167622465 5903683 complement(634067..635122) 1 NC_010334.1 KEGG: plu:plu4347 hypothetical protein; hypothetical protein 635122 5903683 Shal_0525 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672759.1 634067 R 458817 CDS YP_001672760.1 167622466 5903747 complement(635495..636106) 1 NC_010334.1 KEGG: vvy:VVA0312 hypothetical protein; hypothetical protein 636106 5903747 Shal_0526 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672760.1 635495 R 458817 CDS YP_001672761.1 167622467 5903748 complement(636194..637411) 1 NC_010334.1 KEGG: lwe:lwe1072 hypothetical protein; hypothetical protein 637411 5903748 Shal_0527 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672761.1 636194 R 458817 CDS YP_001672762.1 167622468 5903760 637905..638684 1 NC_010334.1 SMART: Elongator protein 3/MiaB/NifB; KEGG: sbl:Sbal_0486 radical SAM domain protein; elongator protein 3/MiaB/NifB 638684 5903760 Shal_0528 Shewanella halifaxensis HAW-EB4 elongator protein 3/MiaB/NifB YP_001672762.1 637905 D 458817 CDS YP_001672763.1 167622469 5904787 complement(638700..639638) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0144 probable transcription regulator protein; LysR family transcriptional regulator 639638 5904787 Shal_0529 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672763.1 638700 R 458817 CDS YP_001672764.1 167622470 5904788 complement(639635..640567) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_0420 transcriptional regulator, LysR family; LysR family transcriptional regulator 640567 5904788 Shal_0530 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672764.1 639635 R 458817 CDS YP_001672765.1 167622471 5905559 complement(641159..642199) 1 NC_010334.1 PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: sfr:Sfri_2899 OmpA/MotB domain protein; OmpA domain-containing protein 642199 5905559 Shal_0531 Shewanella halifaxensis HAW-EB4 OmpA domain-containing protein YP_001672765.1 641159 R 458817 CDS YP_001672766.1 167622472 5905560 complement(642441..643277) 1 NC_010334.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sbm:Shew185_0463 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 643277 5905560 Shal_0532 Shewanella halifaxensis HAW-EB4 mechanosensitive ion channel protein MscS YP_001672766.1 642441 R 458817 CDS YP_001672767.1 167622473 5905825 643489..643947 1 NC_010334.1 KEGG: shw:Sputw3181_3632 hypothetical protein; hypothetical protein 643947 5905825 Shal_0533 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672767.1 643489 D 458817 CDS YP_001672768.1 167622474 5905826 complement(644046..644261) 1 NC_010334.1 PFAM: protein of unknown function DUF465; KEGG: sbm:Shew185_0466 protein of unknown function DUF465; hypothetical protein 644261 5905826 Shal_0534 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672768.1 644046 R 458817 CDS YP_001672769.1 167622475 5906735 644757..645515 1 NC_010334.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 645515 5906735 Shal_0535 Shewanella halifaxensis HAW-EB4 uridine phosphorylase YP_001672769.1 644757 D 458817 CDS YP_001672770.1 167622476 5906783 complement(645593..646345) 1 NC_010334.1 KEGG: slo:Shew_3389 hypothetical protein; hypothetical protein 646345 5906783 Shal_0536 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672770.1 645593 R 458817 CDS YP_001672771.1 167622477 5906784 646741..647220 1 NC_010334.1 PFAM: protein of unknown function DUF107; KEGG: shm:Shewmr7_0449 protein of unknown function DUF107; hypothetical protein 647220 5906784 Shal_0537 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672771.1 646741 D 458817 CDS YP_001672772.1 167622478 5903952 647249..648178 1 NC_010334.1 PFAM: band 7 protein; KEGG: slo:Shew_3387 band 7 protein; hypothetical protein 648178 5903952 Shal_0538 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672772.1 647249 D 458817 CDS YP_001672773.1 167622479 5903953 648178..649116 1 NC_010334.1 PFAM: band 7 protein; KEGG: slo:Shew_3386 band 7 protein; hypothetical protein 649116 5903953 Shal_0539 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672773.1 648178 D 458817 CDS YP_001672774.1 167622480 5903896 649449..649898 1 NC_010334.1 PFAM: NUDIX hydrolase; KEGG: shn:Shewana3_0463 NUDIX hydrolase; NUDIX hydrolase 649898 5903896 Shal_0540 Shewanella halifaxensis HAW-EB4 NUDIX hydrolase YP_001672774.1 649449 D 458817 CDS YP_001672775.1 167622481 5903897 complement(649940..652024) 1 NC_010334.1 KEGG: cps:CPS_1933 sensory box/GGDEF/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 652024 5903897 Shal_0541 Shewanella halifaxensis HAW-EB4 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001672775.1 649940 R 458817 CDS YP_001672776.1 167622482 5903813 652389..652742 1 NC_010334.1 PFAM: Endoribonuclease L-PSP; KEGG: ppr:PBPRB1933 putative translation initiation inhibitor, YjgF family; endoribonuclease L-PSP 652742 5903813 Shal_0542 Shewanella halifaxensis HAW-EB4 endoribonuclease L-PSP YP_001672776.1 652389 D 458817 CDS YP_001672777.1 167622483 5904033 652884..655049 1 NC_010334.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 655049 uvrD 5904033 uvrD Shewanella halifaxensis HAW-EB4 DNA-dependent helicase II YP_001672777.1 652884 D 458817 CDS YP_001672778.1 167622484 5904034 655192..656055 1 NC_010334.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 656055 ubiA 5904034 ubiA Shewanella halifaxensis HAW-EB4 4-hydroxybenzoate octaprenyltransferase YP_001672778.1 655192 D 458817 CDS YP_001672779.1 167622485 5904053 complement(656167..657153) 1 NC_010334.1 PFAM: putative esterase; KEGG: sfr:Sfri_3395 hydrolase of the alpha/beta superfamily; putative esterase 657153 5904053 Shal_0545 Shewanella halifaxensis HAW-EB4 putative esterase YP_001672779.1 656167 R 458817 CDS YP_001672780.1 167622486 5904054 complement(657383..657961) 1 NC_010334.1 KEGG: slo:Shew_0343 hypothetical protein; hypothetical protein 657961 5904054 Shal_0546 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672780.1 657383 R 458817 CDS YP_001672781.1 167622487 5903783 658504..660033 1 NC_010334.1 PFAM: Na+/H+ antiporter NhaC; KEGG: slo:Shew_0344 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 660033 5903783 Shal_0547 Shewanella halifaxensis HAW-EB4 Na+/H+ antiporter NhaC YP_001672781.1 658504 D 458817 CDS YP_001672782.1 167622488 5903502 complement(660391..660975) 1 NC_010334.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: slo:Shew_0345 redoxin domain protein; alkyl hydroperoxide reductase 660975 5903502 Shal_0548 Shewanella halifaxensis HAW-EB4 alkyl hydroperoxide reductase YP_001672782.1 660391 R 458817 CDS YP_001672783.1 167622489 5903503 complement(660968..661414) 1 NC_010334.1 PFAM: cytochrome C biogenesis protein; KEGG: mms:mma_2804 cytochrome c-type biogenesis protein CycL; cytochrome C biogenesis protein 661414 5903503 Shal_0549 Shewanella halifaxensis HAW-EB4 cytochrome C biogenesis protein YP_001672783.1 660968 R 458817 CDS YP_001672784.1 167622490 5903516 complement(661411..663387) 1 NC_010334.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO_0478 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 663387 5903516 Shal_0550 Shewanella halifaxensis HAW-EB4 cytochrome c-type biogenesis protein CcmF YP_001672784.1 661411 R 458817 CDS YP_001672785.1 167622491 5903517 663943..665979 1 NC_010334.1 KEGG: slo:Shew_0348 cytochrome c, putative; cytochrome c 665979 5903517 Shal_0551 Shewanella halifaxensis HAW-EB4 cytochrome c YP_001672785.1 663943 D 458817 CDS YP_001672786.1 167622492 5903546 666040..666468 1 NC_010334.1 SMART: Rhodanese domain protein; KEGG: shw:Sputw3181_0578 rhodanese domain protein; rhodanese domain-containing protein 666468 5903546 Shal_0552 Shewanella halifaxensis HAW-EB4 rhodanese domain-containing protein YP_001672786.1 666040 D 458817 CDS YP_001672787.1 167622493 5903547 666506..667306 1 NC_010334.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_0350 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 667306 5903547 Shal_0553 Shewanella halifaxensis HAW-EB4 FKBP-type peptidylprolyl isomerase YP_001672787.1 666506 D 458817 CDS YP_001672788.1 167622494 5903558 667341..668069 1 NC_010334.1 KEGG: shn:Shewana3_0492 formate-dependent nitrite reductase, NrfG protein; cytochrome c biogenesis factor-like protein 668069 5903558 Shal_0554 Shewanella halifaxensis HAW-EB4 cytochrome c biogenesis factor-like protein YP_001672788.1 667341 D 458817 CDS YP_001672789.1 167622495 5903567 668155..668862 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: she:Shewmr4_0492 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 668862 5903567 Shal_0555 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001672789.1 668155 D 458817 CDS YP_001672790.1 167622496 5903568 668865..669812 1 NC_010334.1 PFAM: Polysulphide reductase NrfD; KEGG: slo:Shew_0353 polysulphide reductase, NrfD; polysulfide reductase NrfD 669812 5903568 Shal_0556 Shewanella halifaxensis HAW-EB4 polysulfide reductase NrfD YP_001672790.1 668865 D 458817 CDS YP_001672791.1 167622497 5903563 670161..670649 1 NC_010334.1 PFAM: NosL family protein; KEGG: shm:Shewmr7_3536 NosL family protein; NosL family protein 670649 5903563 Shal_0557 Shewanella halifaxensis HAW-EB4 NosL family protein YP_001672791.1 670161 D 458817 CDS YP_001672792.1 167622498 5903564 670704..672062 1 NC_010334.1 PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: shw:Sputw3181_0582 periplasmic copper-binding; periplasmic copper-binding protein 672062 5903564 Shal_0558 Shewanella halifaxensis HAW-EB4 periplasmic copper-binding protein YP_001672792.1 670704 D 458817 CDS YP_001672793.1 167622499 5904474 672062..673027 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0356 ABC transporter-related protein; ABC transporter-like protein 673027 5904474 Shal_0559 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001672793.1 672062 D 458817 CDS YP_001672794.1 167622500 5904475 673029..673874 1 NC_010334.1 KEGG: slo:Shew_0357 copper ABC transporter, permease protein; copper ABC transporter permease 673874 5904475 Shal_0560 Shewanella halifaxensis HAW-EB4 copper ABC transporter permease YP_001672794.1 673029 D 458817 CDS YP_001672795.1 167622501 5904372 674084..675367 1 NC_010334.1 PFAM: transcriptional regulator domain protein; KEGG: shm:Shewmr7_3532 transcriptional regulator, CadC; transcriptional regulator CadC 675367 5904372 Shal_0561 Shewanella halifaxensis HAW-EB4 transcriptional regulator CadC YP_001672795.1 674084 D 458817 CDS YP_001672796.1 167622502 5905132 676135..676587 1 NC_010334.1 hypothetical protein 676587 5905132 Shal_0562 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672796.1 676135 D 458817 CDS YP_001672797.1 167622503 5905133 676694..677131 1 NC_010334.1 KEGG: hch:HCH_03398 hypothetical protein; hypothetical protein 677131 5905133 Shal_0563 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672797.1 676694 D 458817 CDS YP_001672798.1 167622504 5905599 677226..677543 1 NC_010334.1 KEGG: fnu:FN1049 hypothetical protein; hypothetical protein 677543 5905599 Shal_0564 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672798.1 677226 D 458817 CDS YP_001672799.1 167622505 5905600 complement(678248..678907) 1 NC_010334.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cps:CPS_3142 transporter, LysE family; lysine exporter protein LysE/YggA 678907 5905600 Shal_0565 Shewanella halifaxensis HAW-EB4 lysine exporter protein LysE/YggA YP_001672799.1 678248 R 458817 CDS YP_001672800.1 167622506 5903383 679313..682120 1 NC_010334.1 hypothetical protein 682120 5903383 Shal_0566 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672800.1 679313 D 458817 CDS YP_001672801.1 167622507 5905650 682834..684864 1 NC_010334.1 KEGG: slo:Shew_0348 cytochrome c, putative; cytochrome c 684864 5905650 Shal_0567 Shewanella halifaxensis HAW-EB4 cytochrome c YP_001672801.1 682834 D 458817 CDS YP_001672802.1 167622508 5905651 684889..685362 1 NC_010334.1 SMART: Rhodanese domain protein; KEGG: slo:Shew_0349 rhodanese domain protein; rhodanese domain-containing protein 685362 5905651 Shal_0568 Shewanella halifaxensis HAW-EB4 rhodanese domain-containing protein YP_001672802.1 684889 D 458817 CDS YP_001672803.1 167622509 5903358 685413..686207 1 NC_010334.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_0350 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 686207 5903358 Shal_0569 Shewanella halifaxensis HAW-EB4 FKBP-type peptidylprolyl isomerase YP_001672803.1 685413 D 458817 CDS YP_001672804.1 167622510 5903359 686325..687038 1 NC_010334.1 KEGG: slo:Shew_0351 tetratricopeptide TPR_2 repeat protein; hypothetical protein 687038 5903359 Shal_0570 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672804.1 686325 D 458817 CDS YP_001672805.1 167622511 5905916 687100..687810 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: she:Shewmr4_0492 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 687810 5905916 Shal_0571 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001672805.1 687100 D 458817 CDS YP_001672806.1 167622512 5905917 687813..688760 1 NC_010334.1 PFAM: Polysulphide reductase NrfD; KEGG: slo:Shew_0353 polysulphide reductase, NrfD; polysulfide reductase NrfD 688760 5905917 Shal_0572 Shewanella halifaxensis HAW-EB4 polysulfide reductase NrfD YP_001672806.1 687813 D 458817 CDS YP_001672807.1 167622513 5906451 688891..689421 1 NC_010334.1 PFAM: NosL family protein; KEGG: sbm:Shew185_3871 NosL family protein; NosL family protein 689421 5906451 Shal_0573 Shewanella halifaxensis HAW-EB4 NosL family protein YP_001672807.1 688891 D 458817 CDS YP_001672808.1 167622514 5906437 689476..690795 1 NC_010334.1 PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: son:SO_0486 copper ABC transporter, periplasmic copper-binding protein; periplasmic copper-binding protein 690795 5906437 Shal_0574 Shewanella halifaxensis HAW-EB4 periplasmic copper-binding protein YP_001672808.1 689476 D 458817 CDS YP_001672809.1 167622515 5906438 690888..691796 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0356 ABC transporter-related protein; ABC transporter-like protein 691796 5906438 Shal_0575 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001672809.1 690888 D 458817 CDS YP_001672810.1 167622516 5906435 691798..692628 1 NC_010334.1 PFAM: ABC-2 type transporter; KEGG: slo:Shew_0357 copper ABC transporter, permease protein; ABC-2 type transporter 692628 5906435 Shal_0576 Shewanella halifaxensis HAW-EB4 ABC-2 type transporter YP_001672810.1 691798 D 458817 CDS YP_001672811.1 167622517 5906436 692904..694187 1 NC_010334.1 PFAM: transcriptional regulator domain protein; KEGG: shn:Shewana3_0499 transcriptional regulator, CadC; transcriptional regulator CadC 694187 5906436 Shal_0577 Shewanella halifaxensis HAW-EB4 transcriptional regulator CadC YP_001672811.1 692904 D 458817 CDS YP_001672812.1 167622518 5906255 694732..695151 1 NC_010334.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 695151 5906255 Shal_0578 Shewanella halifaxensis HAW-EB4 D-ribose pyranase YP_001672812.1 694732 D 458817 CDS YP_001672813.1 167622519 5906256 695169..696674 1 NC_010334.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP-binding protein 696674 5906256 Shal_0579 Shewanella halifaxensis HAW-EB4 D-ribose transporter ATP-binding protein YP_001672813.1 695169 D 458817 CDS YP_001672814.1 167622520 5906247 696671..697645 1 NC_010334.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 697645 rbsC 5906247 rbsC Shewanella halifaxensis HAW-EB4 ribose ABC transporter permease YP_001672814.1 696671 D 458817 CDS YP_001672815.1 167622521 5906036 697745..698644 1 NC_010334.1 periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 698644 5906036 Shal_0581 Shewanella halifaxensis HAW-EB4 D-ribose transporter subunit RbsB YP_001672815.1 697745 D 458817 CDS YP_001672816.1 167622522 5906037 698769..699686 1 NC_010334.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 699686 5906037 Shal_0582 Shewanella halifaxensis HAW-EB4 ribokinase YP_001672816.1 698769 D 458817 CDS YP_001672817.1 167622523 5905944 699775..700779 1 NC_010334.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: vco:VC0395_0006 ribose operon repressor; LacI family transcriptional regulator 700779 5905944 Shal_0583 Shewanella halifaxensis HAW-EB4 LacI family transcriptional regulator YP_001672817.1 699775 D 458817 CDS YP_001672818.1 167622524 5905945 complement(700936..701646) 1 NC_010334.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 701646 fre 5905945 fre Shewanella halifaxensis HAW-EB4 FMN reductase YP_001672818.1 700936 R 458817 CDS YP_001672819.1 167622525 5906362 complement(701758..703239) 1 NC_010334.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: slo:Shew_0360 UbiD family decarboxylase; UbiD family decarboxylase 703239 5906362 Shal_0585 Shewanella halifaxensis HAW-EB4 UbiD family decarboxylase YP_001672819.1 701758 R 458817 CDS YP_001672820.1 167622526 5906139 703462..704016 1 NC_010334.1 KEGG: sfr:Sfri_3388 hypothetical protein; hypothetical protein 704016 5906139 Shal_0586 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672820.1 703462 D 458817 CDS YP_001672821.1 167622527 5906140 complement(704349..704873) 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sfr:Sfri_3606 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 704873 5906140 Shal_0587 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001672821.1 704349 R 458817 CDS YP_001672822.1 167622528 5903339 complement(704917..705501) 1 NC_010334.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cps:CPS_2140 putative lipoprotein; redoxin domain-containing protein 705501 5903339 Shal_0588 Shewanella halifaxensis HAW-EB4 redoxin domain-containing protein YP_001672822.1 704917 R 458817 CDS YP_001672823.1 167622529 5903340 705955..707157 1 NC_010334.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: ppr:PBPRA2465 putative tyrosine-specific transport protein; aromatic amino acid transporter 707157 5903340 Shal_0589 Shewanella halifaxensis HAW-EB4 aromatic amino acid transporter YP_001672823.1 705955 D 458817 CDS YP_001672824.1 167622530 5903637 708503..709846 1 NC_010334.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 709846 5903637 Shal_0590 Shewanella halifaxensis HAW-EB4 glutamate dehydrogenase YP_001672824.1 708503 D 458817 CDS YP_001672825.1 167622531 5904769 716675..717793 1 NC_010334.1 PFAM: Choloylglycine hydrolase; KEGG: vfi:VFA0241 choloylglycine hydrolase; choloylglycine hydrolase 717793 5904769 Shal_0591 Shewanella halifaxensis HAW-EB4 choloylglycine hydrolase YP_001672825.1 716675 D 458817 CDS YP_001672826.1 167622532 5904620 718448..719074 1 NC_010334.1 PFAM: DSBA oxidoreductase; KEGG: pha:PSHAb0519 hypothetical protein; DSBA oxidoreductase 719074 5904620 Shal_0592 Shewanella halifaxensis HAW-EB4 DSBA oxidoreductase YP_001672826.1 718448 D 458817 CDS YP_001672827.1 167622533 5904412 complement(719078..719413) 1 NC_010334.1 hypothetical protein 719413 5904412 Shal_0593 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672827.1 719078 R 458817 CDS YP_001672828.1 167622534 5903317 complement(719579..720241) 1 NC_010334.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: shw:Sputw3181_0592 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 720241 5903317 Shal_0594 Shewanella halifaxensis HAW-EB4 short-chain dehydrogenase/reductase SDR YP_001672828.1 719579 R 458817 CDS YP_001672829.1 167622535 5903318 complement(720297..720743) 1 NC_010334.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: vfi:VF2386 biotin carboxyl carrier protein of acetyl-CoA carboxylase; acetyl-CoA carboxylase, biotin carboxyl carrier protein 720743 5903318 Shal_0595 Shewanella halifaxensis HAW-EB4 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001672829.1 720297 R 458817 CDS YP_001672830.1 167622536 5905984 complement(720753..721208) 1 NC_010334.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 721208 5905984 Shal_0596 Shewanella halifaxensis HAW-EB4 3-dehydroquinate dehydratase YP_001672830.1 720753 R 458817 CDS YP_001672831.1 167622537 5905985 complement(721358..721780) 1 NC_010334.1 PFAM: Class I peptide chain release factor; KEGG: shw:Sputw3181_0594 class I peptide chain release factor; peptidyl-tRNA hydrolase domain-containing protein 721780 5905985 Shal_0597 Shewanella halifaxensis HAW-EB4 peptidyl-tRNA hydrolase domain-containing protein YP_001672831.1 721358 R 458817 CDS YP_001672832.1 167622538 5906775 721963..722334 1 NC_010334.1 KEGG: shn:Shewana3_0513 hypothetical protein; hypothetical protein 722334 5906775 Shal_0598 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672832.1 721963 D 458817 CDS YP_001672833.1 167622539 5906776 722408..722584 1 NC_010334.1 KEGG: sbl:Sbal_0473 hypothetical protein; hypothetical protein 722584 5906776 Shal_0599 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672833.1 722408 D 458817 CDS YP_001672834.1 167622540 5906301 722773..723177 1 NC_010334.1 KEGG: slo:Shew_3359 hypothetical protein; hypothetical protein 723177 5906301 Shal_0600 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672834.1 722773 D 458817 CDS YP_001672835.1 167622541 5906719 723465..724784 1 NC_010334.1 KEGG: slo:Shew_3358 outer membrane efflux family protein, putative; outer membrane efflux family protein 724784 5906719 Shal_0601 Shewanella halifaxensis HAW-EB4 outer membrane efflux family protein YP_001672835.1 723465 D 458817 CDS YP_001672836.1 167622542 5906720 724795..726207 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: slo:Shew_3357 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 726207 5906720 Shal_0602 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001672836.1 724795 D 458817 CDS YP_001672837.1 167622543 5905648 726220..729444 1 NC_010334.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: slo:Shew_3356 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 729444 5905648 Shal_0603 Shewanella halifaxensis HAW-EB4 CzcA family heavy metal efflux protein YP_001672837.1 726220 D 458817 CDS YP_001672838.1 167622544 5905649 729845..730741 1 NC_010334.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 730741 mepA 5905649 mepA Shewanella halifaxensis HAW-EB4 penicillin-insensitive murein endopeptidase YP_001672838.1 729845 D 458817 CDS YP_001672839.1 167622545 5905051 complement(730938..731399) 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: sfr:Sfri_3560 conserved hypothetical protein 22; hypothetical protein 731399 5905051 Shal_0605 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672839.1 730938 R 458817 CDS YP_001672840.1 167622546 5905052 731667..732728 1 NC_010334.1 KEGG: slo:Shew_3350 hypothetical protein; hypothetical protein 732728 5905052 Shal_0606 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672840.1 731667 D 458817 CDS YP_001672841.1 167622547 5904755 732891..733484 1 NC_010334.1 KEGG: slo:Shew_3349 ATP-dependent protease La (LON) domain protein, putative; ATP-dependent protease La 733484 5904755 Shal_0607 Shewanella halifaxensis HAW-EB4 ATP-dependent protease La YP_001672841.1 732891 D 458817 CDS YP_001672842.1 167622548 5903416 733543..734481 1 NC_010334.1 PFAM: pseudouridine synthase; KEGG: sbm:Shew185_0433 pseudouridine synthase; pseudouridine synthase 734481 5903416 Shal_0608 Shewanella halifaxensis HAW-EB4 pseudouridine synthase YP_001672842.1 733543 D 458817 CDS YP_001672843.1 167622549 5903417 complement(734718..736604) 1 NC_010334.1 KEGG: shn:Shewana3_3710 hypothetical protein; hypothetical protein 736604 5903417 Shal_0609 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672843.1 734718 R 458817 CDS YP_001672844.1 167622550 5904096 736706..737641 1 NC_010334.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: she:Shewmr4_3531 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 737641 5904096 Shal_0610 Shewanella halifaxensis HAW-EB4 dTDP-4-dehydrorhamnose reductase YP_001672844.1 736706 D 458817 CDS YP_001672845.1 167622551 5904097 737694..738998 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: slo:Shew_3343 integral membrane sensor signal transduction histidine kinase; histidine kinase 738998 5904097 Shal_0611 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001672845.1 737694 D 458817 CDS YP_001672846.1 167622552 5903976 738991..739545 1 NC_010334.1 PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: sfr:Sfri_1844 response regulator receiver protein; two component Fis family transcriptional regulator 739545 5903976 Shal_0612 Shewanella halifaxensis HAW-EB4 two component Fis family transcriptional regulator YP_001672846.1 738991 D 458817 CDS YP_001672847.1 167622553 5903977 complement(739707..740855) 1 NC_010334.1 PFAM: sulphate transporter; KEGG: slo:Shew_0508 xanthine/uracil/vitamin C permease; sulfate transporter 740855 5903977 Shal_0613 Shewanella halifaxensis HAW-EB4 sulfate transporter YP_001672847.1 739707 R 458817 CDS YP_001672848.1 167622554 5904062 complement(741254..742651) 1 NC_010334.1 KEGG: slo:Shew_0514 cytochrome c, putative; cytochrome c 742651 5904062 Shal_0614 Shewanella halifaxensis HAW-EB4 cytochrome c YP_001672848.1 741254 R 458817 CDS YP_001672849.1 167622555 5904116 complement(742700..744412) 1 NC_010334.1 KEGG: slo:Shew_0515 hypothetical protein; hypothetical protein 744412 5904116 Shal_0615 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672849.1 742700 R 458817 CDS YP_001672850.1 167622556 5904117 complement(744588..744914) 1 NC_010334.1 KEGG: shm:Shewmr7_0441 cytochrome c family protein; cytochrome c family protein 744914 5904117 Shal_0616 Shewanella halifaxensis HAW-EB4 cytochrome c family protein YP_001672850.1 744588 R 458817 CDS YP_001672851.1 167622557 5904025 complement(745325..746044) 1 NC_010334.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: shn:Shewana3_3687 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 746044 5904025 Shal_0617 Shewanella halifaxensis HAW-EB4 short-chain dehydrogenase/reductase SDR YP_001672851.1 745325 R 458817 CDS YP_001672852.1 167622558 5904026 746188..747102 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_4936 substrate-binding transcriptional regulator, LysR family; LysR family transcriptional regulator 747102 5904026 Shal_0618 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672852.1 746188 D 458817 CDS YP_001672853.1 167622559 5903942 747312..748505 1 NC_010334.1 KEGG: slo:Shew_0517 putative plasmid transfer protein; putative plasmid transfer protein 748505 5903942 Shal_0619 Shewanella halifaxensis HAW-EB4 putative plasmid transfer protein YP_001672853.1 747312 D 458817 CDS YP_001672854.1 167622560 5903943 complement(748511..749242) 1 NC_010334.1 PFAM: protein of unknown function DUF81; KEGG: shw:Sputw3181_3556 protein of unknown function DUF81; hypothetical protein 749242 5903943 Shal_0620 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672854.1 748511 R 458817 CDS YP_001672855.1 167622561 5903872 complement(749421..749735) 1 NC_010334.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 749735 5903872 Shal_0621 Shewanella halifaxensis HAW-EB4 transcriptional repressor protein MetJ YP_001672855.1 749421 R 458817 CDS YP_001672856.1 167622562 5904186 749947..751107 1 NC_010334.1 KEGG: she:Shewmr4_3439 O-succinylhomoserine (thiol)-lyase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-succinylhomoserine (thiol)-lyase 751107 5904186 Shal_0622 Shewanella halifaxensis HAW-EB4 O-succinylhomoserine (thiol)-lyase YP_001672856.1 749947 D 458817 CDS YP_001672857.1 167622563 5904187 751123..753516 1 NC_010334.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 753516 metL 5904187 metL Shewanella halifaxensis HAW-EB4 bifunctional aspartate kinase II/homoserine dehydrogenase II YP_001672857.1 751123 D 458817 CDS YP_001672858.1 167622564 5904163 753742..754632 1 NC_010334.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 754632 metF 5904163 metF Shewanella halifaxensis HAW-EB4 5,10-methylenetetrahydrofolate reductase YP_001672858.1 753742 D 458817 CDS YP_001672859.1 167622565 5904164 754790..755176 1 NC_010334.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: aha:AHA_3760 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 755176 5904164 Shal_0625 Shewanella halifaxensis HAW-EB4 glutathione-dependent formaldehyde-activating protein YP_001672859.1 754790 D 458817 CDS YP_001672860.1 167622566 5904208 755177..755440 1 NC_010334.1 KEGG: she:Shewmr4_3430 hypothetical protein; hypothetical protein 755440 5904208 Shal_0626 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672860.1 755177 D 458817 CDS YP_001672861.1 167622567 5904209 755497..756474 1 NC_010334.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: she:Shewmr4_3427 protein of unknown function DUF6, transmembrane; hypothetical protein 756474 5904209 Shal_0627 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672861.1 755497 D 458817 CDS YP_001672862.1 167622568 5903780 complement(756874..758751) 1 NC_010334.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: slo:Shew_0531 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 758751 5903780 Shal_0628 Shewanella halifaxensis HAW-EB4 DEAD/DEAH box helicase YP_001672862.1 756874 R 458817 CDS YP_001672863.1 167622569 5904058 complement(758988..759947) 1 NC_010334.1 PFAM: peptidase M28; KEGG: slo:Shew_0532 peptidase M28; peptidase M28 759947 5904058 Shal_0629 Shewanella halifaxensis HAW-EB4 peptidase M28 YP_001672863.1 758988 R 458817 CDS YP_001672864.1 167622570 5904059 complement(760042..760308) 1 NC_010334.1 KEGG: shm:Shewmr7_0530 hypothetical protein; hypothetical protein 760308 5904059 Shal_0630 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672864.1 760042 R 458817 CDS YP_001672865.1 167622571 5904089 complement(760362..763205) 1 NC_010334.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: slo:Shew_0533 excinuclease ABC, A subunit; excinuclease ABC subunit A 763205 5904089 Shal_0631 Shewanella halifaxensis HAW-EB4 excinuclease ABC subunit A YP_001672865.1 760362 R 458817 CDS YP_001672866.1 167622572 5904090 763472..764839 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_0534 major facilitator superfamily MFS_1; major facilitator transporter 764839 5904090 Shal_0632 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001672866.1 763472 D 458817 CDS YP_001672867.1 167622573 5904007 764872..765543 1 NC_010334.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: shw:Sputw3181_3534 single-strand binding protein; ssDNA-binding protein 765543 5904007 Shal_0633 Shewanella halifaxensis HAW-EB4 ssDNA-binding protein YP_001672867.1 764872 D 458817 CDS YP_001672868.1 167622574 5904008 complement(765787..767454) 1 NC_010334.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: ppr:PBPRA1995 putative transcriptional regulator; putative sigma-54 specific transcriptional regulator 767454 5904008 Shal_0634 Shewanella halifaxensis HAW-EB4 putative sigma-54 specific transcriptional regulator YP_001672868.1 765787 R 458817 CDS YP_001672869.1 167622575 5904100 767916..769103 1 NC_010334.1 PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: ppr:PBPRA1994 ornithine carbamoyltransferase; aspartate/ornithine carbamoyltransferase family protein 769103 5904100 Shal_0635 Shewanella halifaxensis HAW-EB4 aspartate/ornithine carbamoyltransferase family protein YP_001672869.1 767916 D 458817 CDS YP_001672870.1 167622576 5904156 769189..770403 1 NC_010334.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 770403 5904156 Shal_0636 Shewanella halifaxensis HAW-EB4 diaminopropionate ammonia-lyase YP_001672870.1 769189 D 458817 CDS YP_001672871.1 167622577 5904157 770506..771717 1 NC_010334.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase 771717 5904157 Shal_0637 Shewanella halifaxensis HAW-EB4 peptidase YP_001672871.1 770506 D 458817 CDS YP_001672872.1 167622578 5903908 771917..773317 1 NC_010334.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 773317 5903908 Shal_0638 Shewanella halifaxensis HAW-EB4 phenylhydantoinase YP_001672872.1 771917 D 458817 CDS YP_001672873.1 167622579 5903909 773399..774328 1 NC_010334.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 774328 5903909 Shal_0639 Shewanella halifaxensis HAW-EB4 carbamate kinase YP_001672873.1 773399 D 458817 CDS YP_001672874.1 167622580 5903712 complement(775172..777910) 1 NC_010334.1 undetermined function; putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase 777910 5903712 Shal_0640 Shewanella halifaxensis HAW-EB4 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase YP_001672874.1 775172 R 458817 CDS YP_001672875.1 167622581 5903713 complement(777913..782844) 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rpc:RPC_0704 pyruvate flavodoxin/ferredoxin oxidoreductase-like; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 782844 5903713 Shal_0641 Shewanella halifaxensis HAW-EB4 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_001672875.1 777913 R 458817 CDS YP_001672876.1 167622582 5903716 784187..784576 1 NC_010334.1 KEGG: sfr:Sfri_1916 hypothetical protein; hypothetical protein 784576 5903716 Shal_0642 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672876.1 784187 D 458817 CDS YP_001672877.1 167622583 5905776 784696..784998 1 NC_010334.1 KEGG: saz:Sama_3345 hypothetical protein; hypothetical protein 784998 5905776 Shal_0643 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672877.1 784696 D 458817 CDS YP_001672878.1 167622584 5905777 785126..785332 1 NC_010334.1 KEGG: dps:DP2311 hypothetical protein; hypothetical protein 785332 5905777 Shal_0644 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672878.1 785126 D 458817 CDS YP_001672879.1 167622585 5906945 complement(785615..787207) 1 NC_010334.1 PFAM: biotin/lipoyl attachment domain-containing protein; protein of unknown function DUF182; KEGG: ppr:PBPRA1985 putative protein YqeB; hypothetical protein 787207 5906945 Shal_0645 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672879.1 785615 R 458817 CDS YP_001672880.1 167622586 5906946 complement(787308..788333) 1 NC_010334.1 KEGG: ppr:PBPRA1986 hypothetical protein; hypothetical protein 788333 5906946 Shal_0646 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672880.1 787308 R 458817 CDS YP_001672881.1 167622587 5906472 788359..788955 1 NC_010334.1 KEGG: ppr:PBPRA1987 hypotehtical YgfJ; hypothetical protein 788955 5906472 Shal_0647 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672881.1 788359 D 458817 CDS YP_001672882.1 167622588 5906473 789331..792435 1 NC_010334.1 with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase; putative selenate reductase subunit YgfK 792435 5906473 Shal_0648 Shewanella halifaxensis HAW-EB4 putative selenate reductase subunit YgfK YP_001672882.1 789331 D 458817 CDS YP_001672883.1 167622589 5905690 792447..793775 1 NC_010334.1 in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; putative chlorohydrolase/aminohydrolase 793775 5905690 Shal_0649 Shewanella halifaxensis HAW-EB4 putative chlorohydrolase/aminohydrolase YP_001672883.1 792447 D 458817 CDS YP_001672884.1 167622590 5905626 794613..795848 1 NC_010334.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: ppr:PBPRB1772 hypothetical endoribonuclease L-PSP; putative endoribonuclease L-PSP 795848 5905626 Shal_0650 Shewanella halifaxensis HAW-EB4 putative endoribonuclease L-PSP YP_001672884.1 794613 D 458817 CDS YP_001672885.1 167622591 5905627 796238..798439 1 NC_010334.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: ppr:PBPRA1941 hypothetical xanthine dehydrogenase; xanthine dehydrogenase 798439 5905627 Shal_0651 Shewanella halifaxensis HAW-EB4 xanthine dehydrogenase YP_001672885.1 796238 D 458817 CDS YP_001672886.1 167622592 5905575 798423..798902 1 NC_010334.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: ppr:PBPRA1940 hypothetical CoxS, aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; 2Fe-2S iron-sulfur cluster-binding domain-containing protein 798902 5905575 Shal_0652 Shewanella halifaxensis HAW-EB4 2Fe-2S iron-sulfur cluster-binding domain-containing protein YP_001672886.1 798423 D 458817 CDS YP_001672887.1 167622593 5905576 798899..799741 1 NC_010334.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: ppr:PBPRA1939 hypothetical dehydrogenase; molybdopterin dehydrogenase FAD-binding 799741 5905576 Shal_0653 Shewanella halifaxensis HAW-EB4 molybdopterin dehydrogenase FAD-binding YP_001672887.1 798899 D 458817 CDS YP_001672888.1 167622594 5906714 799854..800786 1 NC_010334.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 800786 pyrB 5906714 pyrB Shewanella halifaxensis HAW-EB4 aspartate carbamoyltransferase catalytic subunit YP_001672888.1 799854 D 458817 CDS YP_001672889.1 167622595 5906715 800786..801244 1 NC_010334.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit 801244 5906715 Shal_0655 Shewanella halifaxensis HAW-EB4 aspartate carbamoyltransferase regulatory subunit YP_001672889.1 800786 D 458817 CDS YP_001672890.1 167622596 5905591 801587..802381 1 NC_010334.1 with YgfK and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfM contains a FAD domain; putative selenate reductase subunit YgfM 802381 5905591 Shal_0656 Shewanella halifaxensis HAW-EB4 putative selenate reductase subunit YgfM YP_001672890.1 801587 D 458817 CDS YP_001672891.1 167622597 5904760 802384..805254 1 NC_010334.1 with YgfK and YgfM forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; molybdopterin-containing enzyme; oxidase activity toward hypoxanthine and xanthine can be detected if these substrates are present at high concentration; putative selenate reductase subunit YgfN 805254 5904760 Shal_0657 Shewanella halifaxensis HAW-EB4 putative selenate reductase subunit YgfN YP_001672891.1 802384 D 458817 CDS YP_001672892.1 167622598 5904761 805530..806936 1 NC_010334.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: ppr:PBPRA1931 putative xanthine permease; uracil-xanthine permease 806936 5904761 Shal_0658 Shewanella halifaxensis HAW-EB4 uracil-xanthine permease YP_001672892.1 805530 D 458817 CDS YP_001672893.1 167622599 5904990 807095..808411 1 NC_010334.1 Catalyzes the deamination of guanine; guanine deaminase 808411 5904990 Shal_0659 Shewanella halifaxensis HAW-EB4 guanine deaminase YP_001672893.1 807095 D 458817 CDS YP_001672894.1 167622600 5904991 808636..810012 1 NC_010334.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: ppr:PBPRA1929 putative xanthine/uracil permease; xanthine/uracil/vitamin C permease 810012 5904991 Shal_0660 Shewanella halifaxensis HAW-EB4 xanthine/uracil/vitamin C permease YP_001672894.1 808636 D 458817 CDS YP_001672895.1 167622601 5903454 810060..810812 1 NC_010334.1 KEGG: slo:Shew_3389 hypothetical protein; hypothetical protein 810812 5903454 Shal_0661 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672895.1 810060 D 458817 CDS YP_001672896.1 167622602 5903455 811033..815406 1 NC_010334.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0809 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 815406 5903455 Shal_0662 Shewanella halifaxensis HAW-EB4 formate dehydrogenase subunit alpha YP_001672896.1 811033 D 458817 CDS YP_001672897.1 167622603 5906544 816348..816764 1 NC_010334.1 KEGG: slo:Shew_3273 hypothetical protein; hypothetical protein 816764 5906544 Shal_0663 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672897.1 816348 D 458817 CDS YP_001672898.1 167622604 5903149 complement(816812..817843) 1 NC_010334.1 PFAM: Aldose 1-epimerase; KEGG: sbl:Sbal_3729 aldose 1-epimerase; aldose 1-epimerase 817843 5903149 Shal_0664 Shewanella halifaxensis HAW-EB4 aldose 1-epimerase YP_001672898.1 816812 R 458817 CDS YP_001672899.1 167622605 5903150 complement(817855..819009) 1 NC_010334.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: slo:Shew_3271 galactokinase; galactokinase 819009 5903150 Shal_0665 Shewanella halifaxensis HAW-EB4 galactokinase YP_001672899.1 817855 R 458817 CDS YP_001672900.1 167622606 5906096 complement(819345..820766) 1 NC_010334.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: slo:Shew_3270 SSS sodium solute transporter superfamily; SSS family solute/sodium (Na+) symporter 820766 5906096 Shal_0666 Shewanella halifaxensis HAW-EB4 SSS family solute/sodium (Na+) symporter YP_001672900.1 819345 R 458817 CDS YP_001672901.1 167622607 5906097 complement(820860..824093) 1 NC_010334.1 PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: slo:Shew_3269 beta-galactosidase; beta-galactosidase 824093 5906097 Shal_0667 Shewanella halifaxensis HAW-EB4 beta-galactosidase YP_001672901.1 820860 R 458817 CDS YP_001672902.1 167622608 5905845 complement(824138..825091) 1 NC_010334.1 KEGG: slo:Shew_3268 hypothetical protein; hypothetical protein 825091 5905845 Shal_0668 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672902.1 824138 R 458817 CDS YP_001672903.1 167622609 5905846 complement(825187..826953) 1 NC_010334.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: slo:Shew_3267 sodium/hydrogen exchanger; sodium/hydrogen exchanger 826953 5905846 Shal_0669 Shewanella halifaxensis HAW-EB4 sodium/hydrogen exchanger YP_001672903.1 825187 R 458817 CDS YP_001672904.1 167622610 5905655 complement(827160..828986) 1 NC_010334.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 828986 dipZ 5905655 dipZ Shewanella halifaxensis HAW-EB4 thiol:disulfide interchange protein YP_001672904.1 827160 R 458817 CDS YP_001672905.1 167622611 5905013 complement(828983..829306) 1 NC_010334.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: sbm:Shew185_0637 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 829306 5905013 Shal_0671 Shewanella halifaxensis HAW-EB4 CutA1 divalent ion tolerance protein YP_001672905.1 828983 R 458817 CDS YP_001672906.1 167622612 5905014 829645..830280 1 NC_010334.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: slo:Shew_3264 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein 830280 5905014 Shal_0672 Shewanella halifaxensis HAW-EB4 FxsA cytoplasmic membrane protein YP_001672906.1 829645 D 458817 CDS YP_001672907.1 167622613 5903910 complement(830283..832127) 1 NC_010334.1 SMART: serine/threonine protein kinase; KEGG: slo:Shew_3263 serine/threonine protein kinase; serine/threonine protein kinase 832127 5903910 Shal_0673 Shewanella halifaxensis HAW-EB4 serine/threonine protein kinase YP_001672907.1 830283 R 458817 CDS YP_001672908.1 167622614 5903911 832344..832685 1 NC_010334.1 KEGG: slo:Shew_3262 hypothetical protein; hypothetical protein 832685 5903911 Shal_0674 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672908.1 832344 D 458817 CDS YP_001672909.1 167622615 5906647 832887..833546 1 NC_010334.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 833546 5906647 Shal_0675 Shewanella halifaxensis HAW-EB4 thiopurine S-methyltransferase YP_001672909.1 832887 D 458817 CDS YP_001672910.1 167622616 5906648 complement(833849..834898) 1 NC_010334.1 PFAM: porin Gram-negative type; KEGG: sfr:Sfri_0503 porin, gram-negative type; porin 834898 5906648 Shal_0676 Shewanella halifaxensis HAW-EB4 porin YP_001672910.1 833849 R 458817 CDS YP_001672911.1 167622617 5905131 complement(835534..836595) 1 NC_010334.1 PFAM: porin Gram-negative type; KEGG: slo:Shew_3252 porin, gram-negative type; porin 836595 5905131 Shal_0677 Shewanella halifaxensis HAW-EB4 porin YP_001672911.1 835534 R 458817 CDS YP_001672912.1 167622618 5906063 836978..837799 1 NC_010334.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: slo:Shew_3251 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD-binding protein 837799 5906063 Shal_0678 Shewanella halifaxensis HAW-EB4 UBA/THIF-type NAD/FAD-binding protein YP_001672912.1 836978 D 458817 CDS YP_001672913.1 167622619 5906064 837988..838605 1 NC_010334.1 KEGG: slo:Shew_3248 hypothetical protein; hypothetical protein 838605 5906064 Shal_0679 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672913.1 837988 D 458817 CDS YP_001672914.1 167622620 5906067 complement(838698..838832) 1 NC_010334.1 KEGG: saz:Sama_0549 hypothetical protein; hypothetical protein 838832 5906067 Shal_0680 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672914.1 838698 R 458817 CDS YP_001672915.1 167622621 5906098 complement(839440..840051) 1 NC_010334.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ppr:PBPRA0992 hypothetical transcriptional regulator; AraC family transcriptional regulator 840051 5906098 Shal_0681 Shewanella halifaxensis HAW-EB4 AraC family transcriptional regulator YP_001672915.1 839440 R 458817 CDS YP_001672916.1 167622622 5906149 complement(840811..841269) 1 NC_010334.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit 841269 5906149 Shal_0682 Shewanella halifaxensis HAW-EB4 aspartate carbamoyltransferase regulatory subunit YP_001672916.1 840811 R 458817 CDS YP_001672917.1 167622623 5906168 complement(841269..842201) 1 NC_010334.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 842201 pyrB 5906168 pyrB Shewanella halifaxensis HAW-EB4 aspartate carbamoyltransferase catalytic subunit YP_001672917.1 841269 R 458817 CDS YP_001672918.1 167622624 5906169 complement(842366..843673) 1 NC_010334.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ppu:PP_3666 metabolite MFS transporter, MHS family; major facilitator transporter 843673 5906169 Shal_0684 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001672918.1 842366 R 458817 CDS YP_001672919.1 167622625 5906266 complement(843702..844643) 1 NC_010334.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ppr:PBPRA0990 hypothetical transporter; hypothetical protein 844643 5906266 Shal_0685 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672919.1 843702 R 458817 CDS YP_001672920.1 167622626 5906267 complement(845414..846643) 1 NC_010334.1 PFAM: Endoribonuclease L-PSP; KEGG: ppr:PBPRB1772 hypothetical endoribonuclease L-PSP; endoribonuclease L-PSP 846643 5906267 Shal_0686 Shewanella halifaxensis HAW-EB4 endoribonuclease L-PSP YP_001672920.1 845414 R 458817 CDS YP_001672921.1 167622627 5906336 complement(846809..847813) 1 NC_010334.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: vpa:VP2653 ornithine carbamoyltransferase; ornithine carbamoyltransferase 847813 5906336 Shal_0687 Shewanella halifaxensis HAW-EB4 ornithine carbamoyltransferase YP_001672921.1 846809 R 458817 CDS YP_001672922.1 167622628 5906337 complement(847898..848839) 1 NC_010334.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 848839 5906337 Shal_0688 Shewanella halifaxensis HAW-EB4 carbamate kinase YP_001672922.1 847898 R 458817 CDS YP_001672923.1 167622629 5906377 complement(848891..850111) 1 NC_010334.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 850111 5906377 Shal_0689 Shewanella halifaxensis HAW-EB4 arginine deiminase YP_001672923.1 848891 R 458817 CDS YP_001672924.1 167622630 5906455 complement(850408..851640) 1 NC_010334.1 PFAM: amidinotransferase; KEGG: ppr:PBPRA0993 hypothetical amidinotransferase family protein; non-specific serine/threonine protein kinase 851640 5906455 Shal_0690 Shewanella halifaxensis HAW-EB4 non-specific serine/threonine protein kinase YP_001672924.1 850408 R 458817 CDS YP_001672925.1 167622631 5906456 complement(852451..852969) 1 NC_010334.1 KEGG: shw:Sputw3181_2974 hypothetical protein; hypothetical protein 852969 5906456 Shal_0691 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672925.1 852451 R 458817 CDS YP_001672926.1 167622632 5906510 complement(852974..855193) 1 NC_010334.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: shw:Sputw3181_2975 aldehyde ferredoxin oxidoreductase; putative oxidoreductase 855193 5906510 Shal_0692 Shewanella halifaxensis HAW-EB4 putative oxidoreductase YP_001672926.1 852974 R 458817 CDS YP_001672927.1 167622633 5906511 complement(855223..855864) 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbm:Shew185_3107 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 855864 5906511 Shal_0693 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001672927.1 855223 R 458817 CDS YP_001672928.1 167622634 5906758 856318..856584 1 NC_010334.1 hypothetical protein 856584 5906758 Shal_0694 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672928.1 856318 D 458817 CDS YP_001672929.1 167622635 5906759 857058..857441 1 NC_010334.1 hypothetical protein 857441 5906759 Shal_0695 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672929.1 857058 D 458817 CDS YP_001672930.1 167622636 5906829 complement(857501..858625) 1 NC_010334.1 PFAM: peptidase M50; KEGG: slo:Shew_3232 peptidase M50; peptidase M50 858625 5906829 Shal_0696 Shewanella halifaxensis HAW-EB4 peptidase M50 YP_001672930.1 857501 R 458817 CDS YP_001672931.1 167622637 5906871 complement(858728..860392) 1 NC_010334.1 PFAM: protein of unknown function DUF342; KEGG: slo:Shew_3231 protein of unknown function DUF342; hypothetical protein 860392 5906871 Shal_0697 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672931.1 858728 R 458817 CDS YP_001672932.1 167622638 5906872 complement(860578..861603) 1 NC_010334.1 PFAM: methyltransferase small; Methyltransferase small domain protein; KEGG: she:Shewmr4_0687 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 861603 5906872 Shal_0698 Shewanella halifaxensis HAW-EB4 rRNA (guanine-N(2)-)-methyltransferase YP_001672932.1 860578 R 458817 CDS YP_001672933.1 167622639 5906930 complement(861775..863085) 1 NC_010334.1 PFAM: Alkaline phosphatase; KEGG: shn:Shewana3_3446 alkaline phosphatase; alkaline phosphatase 863085 5906930 Shal_0699 Shewanella halifaxensis HAW-EB4 alkaline phosphatase YP_001672933.1 861775 R 458817 CDS YP_001672934.1 167622640 5906931 complement(863100..864053) 1 NC_010334.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 864053 5906931 Shal_0700 Shewanella halifaxensis HAW-EB4 glutathione synthetase YP_001672934.1 863100 R 458817 CDS YP_001672935.1 167622641 5906947 complement(864198..864929) 1 NC_010334.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 864929 5906947 Shal_0701 Shewanella halifaxensis HAW-EB4 16S ribosomal RNA methyltransferase RsmE YP_001672935.1 864198 R 458817 CDS YP_001672936.1 167622642 5906948 complement(864943..865686) 1 NC_010334.1 PFAM: Endonuclease I; KEGG: slo:Shew_3223 deoxyribonuclease I; deoxyribonuclease I 865686 5906948 Shal_0702 Shewanella halifaxensis HAW-EB4 deoxyribonuclease I YP_001672936.1 864943 R 458817 CDS YP_001672937.1 167622643 5906970 complement(865843..866427) 1 NC_010334.1 PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: slo:Shew_3222 protein of unknown function DUF335, SprT; hypothetical protein 866427 5906970 Shal_0703 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672937.1 865843 R 458817 CDS YP_001672938.1 167622644 5903239 complement(866743..867903) 1 NC_010334.1 KEGG: slo:Shew_3221 hypothetical protein; hypothetical protein 867903 5903239 Shal_0704 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672938.1 866743 R 458817 CDS YP_001672939.1 167622645 5903240 complement(868115..869026) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_3219 transcriptional regulator, LysR family; LysR family transcriptional regulator 869026 5903240 Shal_0705 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672939.1 868115 R 458817 CDS YP_001672940.1 167622646 5906032 869149..873702 1 NC_010334.1 PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: slo:Shew_3218 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase L chain ATP-binding 873702 5906032 Shal_0706 Shewanella halifaxensis HAW-EB4 carbamoyl-phosphate synthase L chain ATP-binding YP_001672940.1 869149 D 458817 CDS YP_001672941.1 167622647 5906033 complement(873852..875096) 1 NC_010334.1 PFAM: sodium/hydrogen exchanger; KEGG: noc:Noc_0960 sodium/hydrogen exchanger; sodium/hydrogen exchanger 875096 5906033 Shal_0707 Shewanella halifaxensis HAW-EB4 sodium/hydrogen exchanger YP_001672941.1 873852 R 458817 CDS YP_001672942.1 167622648 5906040 complement(875199..877790) 1 NC_010334.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: slo:Shew_3215 ATPase, P-type (transporting), HAD superfamily, subfamily IC; HAD superfamily P-type ATPase 877790 5906040 Shal_0708 Shewanella halifaxensis HAW-EB4 HAD superfamily P-type ATPase YP_001672942.1 875199 R 458817 CDS YP_001672943.1 167622649 5906041 complement(877924..878826) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_3435 transcriptional regulator, LysR family; LysR family transcriptional regulator 878826 5906041 Shal_0709 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001672943.1 877924 R 458817 CDS YP_001672944.1 167622650 5906054 complement(879354..879683) 1 NC_010334.1 KEGG: sdn:Sden_0845 hypothetical protein; hypothetical protein 879683 5906054 Shal_0710 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672944.1 879354 R 458817 CDS YP_001672945.1 167622651 5906257 879892..880776 1 NC_010334.1 KEGG: sfr:Sfri_2734 hypothetical protein; hypothetical protein 880776 5906257 Shal_0711 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672945.1 879892 D 458817 CDS YP_001672946.1 167622652 5906258 complement(881146..881571) 1 NC_010334.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: slo:Shew_3209 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit NapB 881571 5906258 Shal_0712 Shewanella halifaxensis HAW-EB4 nitrate reductase cytochrome c-type subunit NapB YP_001672946.1 881146 R 458817 CDS YP_001672947.1 167622653 5906493 complement(881568..882476) 1 NC_010334.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 882476 napH 5906493 napH Shewanella halifaxensis HAW-EB4 quinol dehydrogenase membrane component YP_001672947.1 881568 R 458817 CDS YP_001672948.1 167622654 5906494 complement(882473..883207) 1 NC_010334.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 883207 napG 5906494 napG Shewanella halifaxensis HAW-EB4 quinol dehydrogenase periplasmic component YP_001672948.1 882473 R 458817 CDS YP_001672949.1 167622655 5906601 complement(883268..885748) 1 NC_010334.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 885748 5906601 Shal_0715 Shewanella halifaxensis HAW-EB4 nitrate reductase catalytic subunit YP_001672949.1 883268 R 458817 CDS YP_001672950.1 167622656 5906602 complement(885738..886013) 1 NC_010334.1 PFAM: NapD family protein; KEGG: slo:Shew_3205 NapD family protein; NapD family protein 886013 5906602 Shal_0716 Shewanella halifaxensis HAW-EB4 NapD family protein YP_001672950.1 885738 R 458817 CDS YP_001672951.1 167622657 5906873 complement(886374..887474) 1 NC_010334.1 KEGG: shn:Shewana3_3423 hypothetical protein; hypothetical protein 887474 5906873 Shal_0717 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672951.1 886374 R 458817 CDS YP_001672952.1 167622658 5906885 complement(887471..889999) 1 NC_010334.1 PFAM: protein of unknown function DUF214; KEGG: sbm:Shew185_0832 protein of unknown function DUF214; hypothetical protein 889999 5906885 Shal_0718 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672952.1 887471 R 458817 CDS YP_001672953.1 167622659 5906886 complement(889992..890660) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbm:Shew185_0833 ABC transporter related; ABC transporter-like protein 890660 5906886 Shal_0719 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001672953.1 889992 R 458817 CDS YP_001672954.1 167622660 5906919 890984..896269 1 NC_010334.1 KEGG: slo:Shew_3200 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 896269 5906919 Shal_0720 Shewanella halifaxensis HAW-EB4 multi-sensor hybrid histidine kinase YP_001672954.1 890984 D 458817 CDS YP_001672955.1 167622661 5906920 896374..897393 1 NC_010334.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: saz:Sama_2951 response regulator receiver protein; response regulator receiver modulated metal dependent phosphohydrolase 897393 5906920 Shal_0721 Shewanella halifaxensis HAW-EB4 response regulator receiver modulated metal dependent phosphohydrolase YP_001672955.1 896374 D 458817 CDS YP_001672956.1 167622662 5906921 complement(897471..898442) 1 NC_010334.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: slo:Shew_3198 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) 898442 5906921 Shal_0722 Shewanella halifaxensis HAW-EB4 glycine cleavage T protein (aminomethyl transferase) YP_001672956.1 897471 R 458817 CDS YP_001672957.1 167622663 5906922 complement(898752..899981) 1 NC_010334.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 899981 5906922 Shal_0723 Shewanella halifaxensis HAW-EB4 D-3-phosphoglycerate dehydrogenase YP_001672957.1 898752 R 458817 CDS YP_001672958.1 167622664 5906940 900217..900852 1 NC_010334.1 KEGG: slo:Shew_3195 hypothetical protein; hypothetical protein 900852 5906940 Shal_0724 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672958.1 900217 D 458817 CDS YP_001672959.1 167622665 5905172 901424..902650 1 NC_010334.1 PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: vfi:VFA0967 nucleoside permease NupC; Na+ dependent nucleoside transporter 902650 5905172 Shal_0725 Shewanella halifaxensis HAW-EB4 Na+ dependent nucleoside transporter YP_001672959.1 901424 D 458817 CDS YP_001672960.1 167622666 5905173 902749..903459 1 NC_010334.1 TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: msu:MS1899 purine-nucleoside phosphorylase; purine nucleoside phosphorylase 903459 5905173 Shal_0726 Shewanella halifaxensis HAW-EB4 purine nucleoside phosphorylase YP_001672960.1 902749 D 458817 CDS YP_001672961.1 167622667 5906613 903883..904320 1 NC_010334.1 PFAM: thioesterase superfamily protein; KEGG: slo:Shew_3192 uncharacterized domain 1 protein; thioesterase superfamily protein 904320 5906613 Shal_0727 Shewanella halifaxensis HAW-EB4 thioesterase superfamily protein YP_001672961.1 903883 D 458817 CDS YP_001672962.1 167622668 5906614 904539..904793 1 NC_010334.1 KEGG: sdn:Sden_3091 hypothetical protein; hypothetical protein 904793 5906614 Shal_0728 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672962.1 904539 D 458817 CDS YP_001672963.1 167622669 5904966 905314..906780 1 NC_010334.1 PFAM: Catalase domain protein; KEGG: slo:Shew_3190 catalase; catalase 906780 5904966 Shal_0729 Shewanella halifaxensis HAW-EB4 catalase YP_001672963.1 905314 D 458817 CDS YP_001672964.1 167622670 5904967 complement(906906..907460) 1 NC_010334.1 PFAM: protein of unknown function UPF0016; KEGG: son:SO_1071 hypothetical protein; hypothetical protein 907460 5904967 Shal_0730 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672964.1 906906 R 458817 CDS YP_001672965.1 167622671 5904899 908138..909337 1 NC_010334.1 PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: slo:Shew_3188 aromatic amino acid permease; aromatic amino acid permease 909337 5904899 Shal_0731 Shewanella halifaxensis HAW-EB4 aromatic amino acid permease YP_001672965.1 908138 D 458817 CDS YP_001672966.1 167622672 5905694 909643..911799 1 NC_010334.1 KEGG: sfr:Sfri_0573 hypothetical protein; hypothetical protein 911799 5905694 Shal_0732 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672966.1 909643 D 458817 CDS YP_001672967.1 167622673 5905695 complement(912015..912749) 1 NC_010334.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_3180 pseudouridine synthase; pseudouridine synthase 912749 5905695 Shal_0733 Shewanella halifaxensis HAW-EB4 pseudouridine synthase YP_001672967.1 912015 R 458817 CDS YP_001672968.1 167622674 5905717 complement(912757..913473) 1 NC_010334.1 KEGG: slo:Shew_3179 hypothetical protein; hypothetical protein 913473 5905717 Shal_0734 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672968.1 912757 R 458817 CDS YP_001672969.1 167622675 5905718 complement(913630..915048) 1 NC_010334.1 PFAM: Na+/H+ antiporter NhaC; KEGG: slo:Shew_3178 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 915048 5905718 Shal_0735 Shewanella halifaxensis HAW-EB4 Na+/H+ antiporter NhaC YP_001672969.1 913630 R 458817 CDS YP_001672970.1 167622676 5905758 915464..915988 1 NC_010334.1 KEGG: sbl:Sbal_1340 hypothetical protein; hypothetical protein 915988 5905758 Shal_0736 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672970.1 915464 D 458817 CDS YP_001672971.1 167622677 5905759 916105..917385 1 NC_010334.1 KEGG: shw:Sputw3181_3244 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; O-acetylhomoserine/O-acetylserine sulfhydrylase 917385 5905759 Shal_0737 Shewanella halifaxensis HAW-EB4 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_001672971.1 916105 D 458817 CDS YP_001672972.1 167622678 5905594 917794..919653 1 NC_010334.1 KEGG: sfr:Sfri_1337 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 919653 5905594 Shal_0738 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001672972.1 917794 D 458817 CDS YP_001672973.1 167622679 5903019 919880..921061 1 NC_010334.1 KEGG: sbm:Shew185_1620 porin gram-negative type; porin 921061 5903019 Shal_0739 Shewanella halifaxensis HAW-EB4 porin YP_001672973.1 919880 D 458817 CDS YP_001672974.1 167622680 5903020 complement(921143..921853) 1 NC_010334.1 PFAM: protein of unknown function DUF541; KEGG: shn:Shewana3_3626 protein of unknown function DUF541; hypothetical protein 921853 5903020 Shal_0740 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672974.1 921143 R 458817 CDS YP_001672975.1 167622681 5905484 complement(921968..922639) 1 NC_010334.1 KEGG: ter:Tery_4461 cob(II)yrinic acid a,c-diamide reductase; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; cob(II)yrinic acid a,c-diamide reductase 922639 5905484 Shal_0741 Shewanella halifaxensis HAW-EB4 cob(II)yrinic acid a,c-diamide reductase YP_001672975.1 921968 R 458817 CDS YP_001672976.1 167622682 5905485 complement(922752..924068) 1 NC_010334.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 924068 5905485 Shal_0742 Shewanella halifaxensis HAW-EB4 anaerobic C4-dicarboxylate transporter YP_001672976.1 922752 R 458817 CDS YP_001672977.1 167622683 5905555 924411..925796 1 NC_010334.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: slo:Shew_3144 UDP-N-acetylmuramate; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 925796 5905555 Shal_0743 Shewanella halifaxensis HAW-EB4 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_001672977.1 924411 D 458817 CDS YP_001672978.1 167622684 5905556 925803..926456 1 NC_010334.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: shm:Shewmr7_0821 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; aromatic acid decarboxylase 926456 5905556 Shal_0744 Shewanella halifaxensis HAW-EB4 aromatic acid decarboxylase YP_001672978.1 925803 D 458817 CDS YP_001672979.1 167622685 5905431 926422..926997 1 NC_010334.1 KEGG: slo:Shew_3142 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 926997 5905431 Shal_0745 Shewanella halifaxensis HAW-EB4 hypoxanthine phosphoribosyltransferase YP_001672979.1 926422 D 458817 CDS YP_001672980.1 167622686 5904625 927134..928078 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3141 ABC transporter-related protein; ABC transporter-like protein 928078 5904625 Shal_0746 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001672980.1 927134 D 458817 CDS YP_001672981.1 167622687 5904626 928075..928851 1 NC_010334.1 PFAM: ABC-2 type transporter; KEGG: slo:Shew_3140 ABC-2 type transporter; ABC-2 type transporter 928851 5904626 Shal_0747 Shewanella halifaxensis HAW-EB4 ABC-2 type transporter YP_001672981.1 928075 D 458817 CDS YP_001672982.1 167622688 5905461 complement(929052..929570) 1 NC_010334.1 KEGG: shn:Shewana3_3410 hypothetical protein; hypothetical protein 929570 5905461 Shal_0748 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672982.1 929052 R 458817 CDS YP_001672983.1 167622689 5905462 complement(929843..930694) 1 NC_010334.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 930694 panC 5905462 panC Shewanella halifaxensis HAW-EB4 pantoate--beta-alanine ligase YP_001672983.1 929843 R 458817 CDS YP_001672984.1 167622690 5905472 complement(930758..931552) 1 NC_010334.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 931552 panB 5905472 panB Shewanella halifaxensis HAW-EB4 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_001672984.1 930758 R 458817 CDS YP_001672985.1 167622691 5905473 complement(931688..932182) 1 NC_010334.1 KEGG: shm:Shewmr7_3295 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 932182 5905473 Shal_0751 Shewanella halifaxensis HAW-EB4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001672985.1 931688 R 458817 CDS YP_001672986.1 167622692 5905453 complement(932182..933474) 1 NC_010334.1 KEGG: slo:Shew_3131 poly(A) polymerase; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 933474 5905453 Shal_0752 Shewanella halifaxensis HAW-EB4 poly(A) polymerase YP_001672986.1 932182 R 458817 CDS YP_001672987.1 167622693 5905070 complement(933655..934533) 1 NC_010334.1 PFAM: glutamyl-tRNA synthetase class Ic; KEGG: son:SO_0873 glutamyl-tRNA synthetase domain protein; glutamate--tRNA ligase 934533 5905070 Shal_0753 Shewanella halifaxensis HAW-EB4 glutamate--tRNA ligase YP_001672987.1 933655 R 458817 CDS YP_001672988.1 167622694 5905071 complement(934588..935031) 1 NC_010334.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: slo:Shew_3129 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 935031 5905071 Shal_0754 Shewanella halifaxensis HAW-EB4 TraR/DksA family transcriptional regulator YP_001672988.1 934588 R 458817 CDS YP_001672989.1 167622695 5905274 complement(935190..935894) 1 NC_010334.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 935894 5905274 Shal_0755 Shewanella halifaxensis HAW-EB4 sugar fermentation stimulation protein A YP_001672989.1 935190 R 458817 CDS YP_001672990.1 167622696 5905275 936167..937444 1 NC_010334.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 937444 5905275 Shal_0756 Shewanella halifaxensis HAW-EB4 aminopeptidase B YP_001672990.1 936167 D 458817 CDS YP_001672991.1 167622697 5905140 937614..938609 1 NC_010334.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shn:Shewana3_0468 putative transcriptional regulator, CadC; transcriptional regulator CadC 938609 5905140 Shal_0757 Shewanella halifaxensis HAW-EB4 transcriptional regulator CadC YP_001672991.1 937614 D 458817 CDS YP_001672992.1 167622698 5905141 complement(938887..939198) 1 NC_010334.1 KEGG: pin:Ping_1759 hypothetical protein; hypothetical protein 939198 5905141 Shal_0758 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672992.1 938887 R 458817 CDS YP_001672993.1 167622699 5905150 complement(939265..939798) 1 NC_010334.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: pin:Ping_1760 2'-5' RNA ligase; 2'-5' RNA ligase 939798 5905150 Shal_0759 Shewanella halifaxensis HAW-EB4 2'-5' RNA ligase YP_001672993.1 939265 R 458817 CDS YP_001672994.1 167622700 5905121 939949..942486 1 NC_010334.1 KEGG: spc:Sputcn32_0655 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB 942486 5905121 Shal_0760 Shewanella halifaxensis HAW-EB4 ATP-dependent helicase HrpB YP_001672994.1 939949 D 458817 CDS YP_001672995.1 167622701 5905122 942511..944871 1 NC_010334.1 KEGG: slo:Shew_3123 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 1B 944871 5905122 Shal_0761 Shewanella halifaxensis HAW-EB4 penicillin-binding protein 1B YP_001672995.1 942511 D 458817 CDS YP_001672996.1 167622702 5904797 944864..945364 1 NC_010334.1 KEGG: sdn:Sden_0673 hypothetical protein; hypothetical protein 945364 5904797 Shal_0762 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672996.1 944864 D 458817 CDS YP_001672997.1 167622703 5904798 complement(945475..946662) 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: pap:PSPA7_0980 probable MFS transporter; sugar efflux transporter 946662 5904798 Shal_0763 Shewanella halifaxensis HAW-EB4 sugar efflux transporter YP_001672997.1 945475 R 458817 CDS YP_001672998.1 167622704 5904933 complement(947171..947608) 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_1378 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 947608 5904933 Shal_0764 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001672998.1 947171 R 458817 CDS YP_001672999.1 167622705 5904934 complement(947867..948619) 1 NC_010334.1 hypothetical protein 948619 5904934 Shal_0765 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001672999.1 947867 R 458817 CDS YP_001673000.1 167622706 5904941 complement(949200..951389) 1 NC_010334.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shm:Shewmr7_3399 TonB-dependent receptor; TonB-dependent receptor 951389 5904941 Shal_0766 Shewanella halifaxensis HAW-EB4 TonB-dependent receptor YP_001673000.1 949200 R 458817 CDS YP_001673001.1 167622707 5903037 951636..952340 1 NC_010334.1 KEGG: shn:Shewana3_0631 hypothetical protein; hypothetical protein 952340 5903037 Shal_0767 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673001.1 951636 D 458817 CDS YP_001673002.1 167622708 5903038 953051..954421 1 NC_010334.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: slo:Shew_0496 amino acid carrier protein; amino acid carrier protein 954421 5903038 Shal_0768 Shewanella halifaxensis HAW-EB4 amino acid carrier protein YP_001673002.1 953051 D 458817 CDS YP_001673003.1 167622709 5902778 complement(954517..954771) 1 NC_010334.1 hypothetical protein 954771 5902778 Shal_0769 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673003.1 954517 R 458817 CDS YP_001673004.1 167622710 5902779 954866..958555 1 NC_010334.1 KEGG: slo:Shew_3118 hypothetical protein; hypothetical protein 958555 5902779 Shal_0770 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673004.1 954866 D 458817 CDS YP_001673005.1 167622711 5903730 958555..959208 1 NC_010334.1 KEGG: sfr:Sfri_0526 hypothetical protein; hypothetical protein 959208 5903730 Shal_0771 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673005.1 958555 D 458817 CDS YP_001673006.1 167622712 5903925 959210..960430 1 NC_010334.1 KEGG: shm:Shewmr7_3380 hypothetical protein; hypothetical protein 960430 5903925 Shal_0772 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673006.1 959210 D 458817 CDS YP_001673007.1 167622713 5903926 960923..962179 1 NC_010334.1 PFAM: sodium:dicarboxylate symporter; KEGG: slo:Shew_3115 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 962179 5903926 Shal_0773 Shewanella halifaxensis HAW-EB4 sodium:dicarboxylate symporter YP_001673007.1 960923 D 458817 CDS YP_001673008.1 167622714 5903680 complement(962283..963665) 1 NC_010334.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: sfr:Sfri_3688 two component, sigma54 specific, transcriptional regulator, fis family protein; Fis family two component sigma54 specific transcriptional regulator 963665 5903680 Shal_0774 Shewanella halifaxensis HAW-EB4 Fis family two component sigma54 specific transcriptional regulator YP_001673008.1 962283 R 458817 CDS YP_001673009.1 167622715 5903681 complement(963769..965796) 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3; KEGG: slo:Shew_3113 histidine kinase; histidine kinase 965796 5903681 Shal_0775 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001673009.1 963769 R 458817 CDS YP_001673010.1 167622716 5903424 966231..968021 1 NC_010334.1 KEGG: slo:Shew_3112 flavocytochrome c; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; flavocytochrome c 968021 5903424 Shal_0776 Shewanella halifaxensis HAW-EB4 flavocytochrome c YP_001673010.1 966231 D 458817 CDS YP_001673011.1 167622717 5903425 968629..969606 1 NC_010334.1 PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein 969606 5903425 Shal_0777 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673011.1 968629 D 458817 CDS YP_001673012.1 167622718 5902937 970624..971628 1 NC_010334.1 PFAM: basic membrane lipoprotein; KEGG: pin:Ping_1297 basic membrane lipoprotein; basic membrane lipoprotein 971628 5902937 Shal_0778 Shewanella halifaxensis HAW-EB4 basic membrane lipoprotein YP_001673012.1 970624 D 458817 CDS YP_001673013.1 167622719 5904154 971770..973359 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pin:Ping_1298 ABC transporter ATP-binding protein; ABC transporter-like protein 973359 5904154 Shal_0779 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001673013.1 971770 D 458817 CDS YP_001673014.1 167622720 5904155 973356..974486 1 NC_010334.1 PFAM: inner-membrane translocator; KEGG: pin:Ping_1299 ABC transporter inner-membrane translocator; inner-membrane translocator 974486 5904155 Shal_0780 Shewanella halifaxensis HAW-EB4 inner-membrane translocator YP_001673014.1 973356 D 458817 CDS YP_001673015.1 167622721 5903075 974490..975455 1 NC_010334.1 PFAM: inner-membrane translocator; KEGG: pin:Ping_1300 ABC sugar transporter inner membrane translocator; inner-membrane translocator 975455 5903075 Shal_0781 Shewanella halifaxensis HAW-EB4 inner-membrane translocator YP_001673015.1 974490 D 458817 CDS YP_001673016.1 167622722 5903076 976092..976871 1 NC_010334.1 KEGG: sde:Sde_2333 hypothetical protein; hypothetical protein 976871 5903076 Shal_0782 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673016.1 976092 D 458817 CDS YP_001673017.1 167622723 5902874 976947..977543 1 NC_010334.1 KEGG: vpa:VP1852 hypothetical protein; hypothetical protein 977543 5902874 Shal_0783 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673017.1 976947 D 458817 CDS YP_001673018.1 167622724 5902875 complement(978116..979105) 1 NC_010334.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 979105 5902875 Shal_0784 Shewanella halifaxensis HAW-EB4 fructose-1,6-bisphosphatase YP_001673018.1 978116 R 458817 CDS YP_001673019.1 167622725 5903093 979344..981590 1 NC_010334.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: slo:Shew_0774 peptidase S9B, dipeptidylpeptidase IV domain protein; peptidase S9B dipeptidylpeptidase IV subunit 981590 5903093 Shal_0785 Shewanella halifaxensis HAW-EB4 peptidase S9B dipeptidylpeptidase IV subunit YP_001673019.1 979344 D 458817 CDS YP_001673020.1 167622726 5902799 complement(982020..982736) 1 NC_010334.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_0777 two component transcriptional regulator, winged helix family; two-component response regulator 982736 5902799 Shal_0786 Shewanella halifaxensis HAW-EB4 two-component response regulator YP_001673020.1 982020 R 458817 CDS YP_001673021.1 167622727 5902800 983297..983725 1 NC_010334.1 KEGG: slo:Shew_0778 hypothetical protein; hypothetical protein 983725 5902800 Shal_0787 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673021.1 983297 D 458817 CDS YP_001673022.1 167622728 5903456 984154..985539 1 NC_010334.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 985539 5903456 Shal_0788 Shewanella halifaxensis HAW-EB4 aspartate kinase III YP_001673022.1 984154 D 458817 CDS YP_001673023.1 167622729 5903457 985596..986702 1 NC_010334.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: she:Shewmr4_0654 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 986702 5903457 Shal_0789 Shewanella halifaxensis HAW-EB4 succinylglutamate desuccinylase/aspartoacylase YP_001673023.1 985596 D 458817 CDS YP_001673024.1 167622730 5903065 complement(986773..987234) 1 NC_010334.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 987234 5903065 Shal_0790 Shewanella halifaxensis HAW-EB4 DNA-binding transcriptional regulator AsnC YP_001673024.1 986773 R 458817 CDS YP_001673025.1 167622731 5903066 complement(987616..988293) 1 NC_010334.1 PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_0827 pseudouridylate synthase; pseudouridine synthase 988293 5903066 Shal_0791 Shewanella halifaxensis HAW-EB4 pseudouridine synthase YP_001673025.1 987616 R 458817 CDS YP_001673026.1 167622732 5902599 complement(988407..988697) 1 NC_010334.1 KEGG: sbm:Shew185_3502 hypothetical protein; hypothetical protein 988697 5902599 Shal_0792 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673026.1 988407 R 458817 CDS YP_001673027.1 167622733 5902661 complement(988737..989285) 1 NC_010334.1 PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: shn:Shewana3_3316 methyltransferase type 12; type 12 methyltransferase 989285 5902661 Shal_0793 Shewanella halifaxensis HAW-EB4 type 12 methyltransferase YP_001673027.1 988737 R 458817 CDS YP_001673028.1 167622734 5902662 complement(989257..989667) 1 NC_010334.1 KEGG: slo:Shew_0786 hypothetical protein; hypothetical protein 989667 5902662 Shal_0794 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673028.1 989257 R 458817 CDS YP_001673029.1 167622735 5902733 990118..991107 1 NC_010334.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: slo:Shew_0787 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 991107 5902733 Shal_0795 Shewanella halifaxensis HAW-EB4 D-isomer specific 2-hydroxyacid dehydrogenase YP_001673029.1 990118 D 458817 CDS YP_001673030.1 167622736 5902734 991312..992049 1 NC_010334.1 PFAM: dienelactone hydrolase; KEGG: sfr:Sfri_0519 dienelactone hydrolase; dienelactone hydrolase 992049 5902734 Shal_0796 Shewanella halifaxensis HAW-EB4 dienelactone hydrolase YP_001673030.1 991312 D 458817 CDS YP_001673031.1 167622737 5902827 complement(992184..992708) 1 NC_010334.1 KEGG: she:Shewmr4_0805 hypothetical protein; hypothetical protein 992708 5902827 Shal_0797 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673031.1 992184 R 458817 CDS YP_001673032.1 167622738 5902828 993006..993749 1 NC_010334.1 KEGG: slo:Shew_0791 spermine synthase; spermine synthase 993749 5902828 Shal_0798 Shewanella halifaxensis HAW-EB4 spermine synthase YP_001673032.1 993006 D 458817 CDS YP_001673033.1 167622739 5902839 994152..994721 1 NC_010334.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sfr:Sfri_0522 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 994721 5902839 Shal_0799 Shewanella halifaxensis HAW-EB4 alkyl hydroperoxide reductase YP_001673033.1 994152 D 458817 CDS YP_001673034.1 167622740 5902923 995018..996592 1 NC_010334.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_0793 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 996592 5902923 Shal_0800 Shewanella halifaxensis HAW-EB4 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001673034.1 995018 D 458817 CDS YP_001673035.1 167622741 5902924 996660..997784 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_0794 diguanylate cyclase; diguanylate cyclase 997784 5902924 Shal_0801 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001673035.1 996660 D 458817 CDS YP_001673036.1 167622742 5902647 complement(997867..998064) 1 NC_010334.1 KEGG: slo:Shew_0796 hypothetical protein; hypothetical protein 998064 5902647 Shal_0802 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673036.1 997867 R 458817 CDS YP_001673037.1 167622743 5902648 complement(998700..1000124) 1 NC_010334.1 KEGG: slo:Shew_0797 hypothetical protein; hypothetical protein 1000124 5902648 Shal_0803 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673037.1 998700 R 458817 CDS YP_001673038.1 167622744 5902970 complement(1000459..1000875) 1 NC_010334.1 KEGG: slo:Shew_0798 hypothetical protein; hypothetical protein 1000875 5902970 Shal_0804 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673038.1 1000459 R 458817 CDS YP_001673039.1 167622745 5902971 1001115..1002290 1 NC_010334.1 PFAM: FAD dependent oxidoreductase; KEGG: sbm:Shew185_3497 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1002290 5902971 Shal_0805 Shewanella halifaxensis HAW-EB4 FAD dependent oxidoreductase YP_001673039.1 1001115 D 458817 CDS YP_001673040.1 167622746 5903016 1002450..1003664 1 NC_010334.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: sdn:Sden_3160 chromate transporter; chromate transporter 1003664 5903016 Shal_0806 Shewanella halifaxensis HAW-EB4 chromate transporter YP_001673040.1 1002450 D 458817 CDS YP_001673041.1 167622747 5902979 complement(1003743..1008068) 1 NC_010334.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0809 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 1008068 5902979 Shal_0807 Shewanella halifaxensis HAW-EB4 formate dehydrogenase subunit alpha YP_001673041.1 1003743 R 458817 CDS YP_001673042.1 167622748 5902980 complement(1008373..1009365) 1 NC_010334.1 PFAM: pentapeptide repeat protein; Ion transport 2 domain protein; KEGG: slo:Shew_0810 ion transport 2 domain protein; Ion transport 2 domain-containing protein 1009365 5902980 Shal_0808 Shewanella halifaxensis HAW-EB4 Ion transport 2 domain-containing protein YP_001673042.1 1008373 R 458817 CDS YP_001673043.1 167622749 5902616 1009893..1010774 1 NC_010334.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: slo:Shew_0811 peptide chain release factor 2; peptide chain release factor 2 1010774 5902616 Shal_0809 Shewanella halifaxensis HAW-EB4 peptide chain release factor 2 YP_001673043.1 1009893 D 458817 CDS YP_001673044.1 167622750 5902617 1010787..1012292 1 NC_010334.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1012292 lysS 5902617 lysS Shewanella halifaxensis HAW-EB4 lysyl-tRNA synthetase YP_001673044.1 1010787 D 458817 CDS YP_001673045.1 167622751 5902919 1012995..1015454 1 NC_010334.1 KEGG: slo:Shew_0813 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1015454 5902919 Shal_0811 Shewanella halifaxensis HAW-EB4 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001673045.1 1012995 D 458817 CDS YP_001673046.1 167622752 5902920 complement(1015500..1016111) 1 NC_010334.1 PFAM: pseudouridine synthase; KEGG: cps:CPS_1154 RNA pseudouridine synthase family protein; pseudouridine synthase 1016111 5902920 Shal_0812 Shewanella halifaxensis HAW-EB4 pseudouridine synthase YP_001673046.1 1015500 R 458817 CDS YP_001673047.1 167622753 5903265 1016292..1017083 1 NC_010334.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: slo:Shew_0815 glucosamine-6-phosphate isomerase; glucosamine-6-phosphate isomerase 1017083 5903265 Shal_0813 Shewanella halifaxensis HAW-EB4 glucosamine-6-phosphate isomerase YP_001673047.1 1016292 D 458817 CDS YP_001673048.1 167622754 5902597 1017318..1017989 1 NC_010334.1 PFAM: nitroreductase; KEGG: sfr:Sfri_3203 nitroreductase; nitroreductase 1017989 5902597 Shal_0814 Shewanella halifaxensis HAW-EB4 nitroreductase YP_001673048.1 1017318 D 458817 CDS YP_001673049.1 167622755 5902598 1018054..1018371 1 NC_010334.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: mbu:Mbur_1476 cupin family protein; cupin 1018371 5902598 Shal_0815 Shewanella halifaxensis HAW-EB4 cupin YP_001673049.1 1018054 D 458817 CDS YP_001673050.1 167622756 5902737 1018503..1020452 1 NC_010334.1 PFAM: peptidase U32; KEGG: sbl:Sbal_0734 peptidase U32; peptidase U32 1020452 5902737 Shal_0816 Shewanella halifaxensis HAW-EB4 peptidase U32 YP_001673050.1 1018503 D 458817 CDS YP_001673051.1 167622757 5902738 1020533..1020907 1 NC_010334.1 PFAM: protein of unknown function DUF1696; KEGG: slo:Shew_0819 protein of unknown function DUF1696; hypothetical protein 1020907 5902738 Shal_0817 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673051.1 1020533 D 458817 CDS YP_001673052.1 167622758 5902842 complement(1020960..1021406) 1 NC_010334.1 PFAM: Fe-S metabolism associated SufE; KEGG: shn:Shewana3_0807 Fe-S metabolism associated SufE; Fe-S metabolism associated SufE 1021406 5902842 Shal_0818 Shewanella halifaxensis HAW-EB4 Fe-S metabolism associated SufE YP_001673052.1 1020960 R 458817 CDS YP_001673053.1 167622759 5902843 complement(1021720..1022931) 1 NC_010334.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: son:SO_3789 aminotransferase, class V; SufS subfamily cysteine desulfurase 1022931 5902843 Shal_0819 Shewanella halifaxensis HAW-EB4 SufS subfamily cysteine desulfurase YP_001673053.1 1021720 R 458817 CDS YP_001673054.1 167622760 5902864 complement(1023028..1024071) 1 NC_010334.1 PFAM: aldo/keto reductase; KEGG: slo:Shew_0736 aldo/keto reductase; aldo/keto reductase 1024071 5902864 Shal_0820 Shewanella halifaxensis HAW-EB4 aldo/keto reductase YP_001673054.1 1023028 R 458817 CDS YP_001673055.1 167622761 5904222 complement(1024177..1025118) 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: slo:Shew_0737 transcriptional regulator, MarR family with acetyltransferase activity; MarR family transcriptional regulator 1025118 5904222 Shal_0821 Shewanella halifaxensis HAW-EB4 MarR family transcriptional regulator YP_001673055.1 1024177 R 458817 CDS YP_001673056.1 167622762 5904223 complement(1025211..1025750) 1 NC_010334.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 1025750 5904223 Shal_0822 Shewanella halifaxensis HAW-EB4 NTPase YP_001673056.1 1025211 R 458817 CDS YP_001673057.1 167622763 5904329 1026307..1027593 1 NC_010334.1 PFAM: aromatic amino acid permease; KEGG: shn:Shewana3_3365 serine transporter, putative; aromatic amino acid permease 1027593 5904329 Shal_0823 Shewanella halifaxensis HAW-EB4 aromatic amino acid permease YP_001673057.1 1026307 D 458817 CDS YP_001673058.1 167622764 5904330 1027770..1029137 1 NC_010334.1 KEGG: slo:Shew_0740 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 1029137 5904330 Shal_0824 Shewanella halifaxensis HAW-EB4 L-serine dehydratase 1 YP_001673058.1 1027770 D 458817 CDS YP_001673059.1 167622765 5904347 complement(1029242..1029685) 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_3313 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1029685 5904347 Shal_0825 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001673059.1 1029242 R 458817 CDS YP_001673060.1 167622766 5904348 1029843..1030181 1 NC_010334.1 KEGG: sbm:Shew185_3550 hypothetical protein; hypothetical protein 1030181 5904348 Shal_0826 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673060.1 1029843 D 458817 CDS YP_001673061.1 167622767 5904482 1030351..1031649 1 NC_010334.1 PFAM: sodium:dicarboxylate symporter; KEGG: slo:Shew_0743 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1031649 5904482 Shal_0827 Shewanella halifaxensis HAW-EB4 sodium:dicarboxylate symporter YP_001673061.1 1030351 D 458817 CDS YP_001673062.1 167622768 5904542 complement(1031807..1032220) 1 NC_010334.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: spc:Sputcn32_0864 protein of unknown function DUF306, MetA and HslJ; hypothetical protein 1032220 5904542 Shal_0828 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673062.1 1031807 R 458817 CDS YP_001673063.1 167622769 5904543 1032352..1032507 1 NC_010334.1 KEGG: shn:Shewana3_3360 hypothetical protein; hypothetical protein 1032507 5904543 Shal_0829 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673063.1 1032352 D 458817 CDS YP_001673064.1 167622770 5904553 complement(1032676..1033596) 1 NC_010334.1 KEGG: slo:Shew_0746 diguanylate cyclase; putative diguanylate cyclase 1033596 5904553 Shal_0830 Shewanella halifaxensis HAW-EB4 putative diguanylate cyclase YP_001673064.1 1032676 R 458817 CDS YP_001673065.1 167622771 5904554 1033884..1034441 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sbm:Shew185_3545 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1034441 5904554 Shal_0831 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001673065.1 1033884 D 458817 CDS YP_001673066.1 167622772 5904783 1034450..1034800 1 NC_010334.1 KEGG: sfr:Sfri_0644 hypothetical protein; hypothetical protein 1034800 5904783 Shal_0832 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673066.1 1034450 D 458817 CDS YP_001673067.1 167622773 5904784 1035191..1035595 1 NC_010334.1 hypothetical protein 1035595 5904784 Shal_0833 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673067.1 1035191 D 458817 CDS YP_001673068.1 167622774 5902835 complement(1035798..1036334) 1 NC_010334.1 KEGG: shm:Shewmr7_3476 hypothetical protein; hypothetical protein 1036334 5902835 Shal_0834 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673068.1 1035798 R 458817 CDS YP_001673069.1 167622775 5902772 1037152..1037847 1 NC_010334.1 KEGG: mmw:Mmwyl1_2727 hypothetical protein; hypothetical protein 1037847 5902772 Shal_0835 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673069.1 1037152 D 458817 CDS YP_001673070.1 167622776 5902773 complement(1038247..1039533) 1 NC_010334.1 PFAM: protein of unknown function DUF955; KEGG: psb:Psyr_2659 protein of unknown function DUF955; hypothetical protein 1039533 5902773 Shal_0836 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673070.1 1038247 R 458817 CDS YP_001673071.1 167622777 5903157 1040247..1041074 1 NC_010334.1 KEGG: slo:Shew_3061 hypothetical protein; hypothetical protein 1041074 5903157 Shal_0837 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673071.1 1040247 D 458817 CDS YP_001673072.1 167622778 5903158 1041380..1042207 1 NC_010334.1 KEGG: slo:Shew_3061 hypothetical protein; hypothetical protein 1042207 5903158 Shal_0838 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673072.1 1041380 D 458817 CDS YP_001673073.1 167622779 5902968 complement(1042333..1042806) 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sfr:Sfri_0645 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1042806 5902968 Shal_0839 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001673073.1 1042333 R 458817 CDS YP_001673074.1 167622780 5902969 complement(1042900..1043853) 1 NC_010334.1 PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bam:Bamb_1916 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 1043853 5902969 Shal_0840 Shewanella halifaxensis HAW-EB4 LuxR family transcriptional regulator YP_001673074.1 1042900 R 458817 CDS YP_001673075.1 167622781 5902784 1043923..1045572 1 NC_010334.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: ajs:Ajs_3486 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 1045572 5902784 Shal_0841 Shewanella halifaxensis HAW-EB4 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001673075.1 1043923 D 458817 CDS YP_001673076.1 167622782 5903057 1045617..1047347 1 NC_010334.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rfr:Rfer_3509 thiamine pyrophosphate enzyme-like TPP binding protein; thiamine pyrophosphate protein central region 1047347 5903057 Shal_0842 Shewanella halifaxensis HAW-EB4 thiamine pyrophosphate protein central region YP_001673076.1 1045617 D 458817 CDS YP_001673077.1 167622783 5903058 complement(1047456..1048610) 1 NC_010334.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1048610 5903058 Shal_0843 Shewanella halifaxensis HAW-EB4 S-adenosylmethionine synthetase YP_001673077.1 1047456 R 458817 CDS YP_001673078.1 167622784 5902964 1049126..1051117 1 NC_010334.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1051117 5902964 Shal_0844 Shewanella halifaxensis HAW-EB4 transketolase YP_001673078.1 1049126 D 458817 CDS YP_001673079.1 167622785 5902965 1051215..1052234 1 NC_010334.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 1052234 5902965 Shal_0845 Shewanella halifaxensis HAW-EB4 erythrose 4-phosphate dehydrogenase YP_001673079.1 1051215 D 458817 CDS YP_001673080.1 167622786 5902988 1052725..1053900 1 NC_010334.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1053900 pgk 5902988 pgk Shewanella halifaxensis HAW-EB4 phosphoglycerate kinase YP_001673080.1 1052725 D 458817 CDS YP_001673081.1 167622787 5902989 1054258..1055322 1 NC_010334.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 1055322 5902989 Shal_0847 Shewanella halifaxensis HAW-EB4 fructose-1,6-bisphosphate aldolase YP_001673081.1 1054258 D 458817 CDS YP_001673082.1 167622788 5903468 1055533..1056273 1 NC_010334.1 PFAM: protein of unknown function DUF481; KEGG: saz:Sama_2754 hypothetical protein; hypothetical protein 1056273 5903468 Shal_0848 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673082.1 1055533 D 458817 CDS YP_001673083.1 167622789 5902610 1056605..1057342 1 NC_010334.1 KEGG: she:Shewmr4_0779 response regulator receiver protein; putative transcriptional regulator CadC 1057342 5902610 Shal_0849 Shewanella halifaxensis HAW-EB4 putative transcriptional regulator CadC YP_001673083.1 1056605 D 458817 CDS YP_001673084.1 167622790 5902611 1057347..1057877 1 NC_010334.1 hypothetical protein 1057877 5902611 Shal_0850 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673084.1 1057347 D 458817 CDS YP_001673085.1 167622791 5902991 1057988..1059427 1 NC_010334.1 KEGG: slo:Shew_0762 hypothetical protein; hypothetical protein 1059427 5902991 Shal_0851 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673085.1 1057988 D 458817 CDS YP_001673086.1 167622792 5902992 complement(1059460..1061679) 1 NC_010334.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; KEGG: slo:Shew_0763 putative PAS/PAC sensor protein; putative diguanylate cyclase 1061679 5902992 Shal_0852 Shewanella halifaxensis HAW-EB4 putative diguanylate cyclase YP_001673086.1 1059460 R 458817 CDS YP_001673087.1 167622793 5902954 complement(1061975..1062583) 1 NC_010334.1 PFAM: Radical SAM domain protein; KEGG: slo:Shew_0764 radical SAM domain protein; radical SAM domain-containing protein 1062583 5902954 Shal_0853 Shewanella halifaxensis HAW-EB4 radical SAM domain-containing protein YP_001673087.1 1061975 R 458817 CDS YP_001673088.1 167622794 5902955 complement(1062777..1065929) 1 NC_010334.1 PFAM: acriflavin resistance protein; KEGG: sbm:Shew185_3529 acriflavin resistance protein; acriflavin resistance protein 1065929 5902955 Shal_0854 Shewanella halifaxensis HAW-EB4 acriflavin resistance protein YP_001673088.1 1062777 R 458817 CDS YP_001673089.1 167622795 5902665 complement(1065929..1067158) 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_0766 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1067158 5902665 Shal_0855 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001673089.1 1065929 R 458817 CDS YP_001673090.1 167622796 5902785 1067457..1068047 1 NC_010334.1 hypothetical protein 1068047 5902785 Shal_0856 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673090.1 1067457 D 458817 CDS YP_001673091.1 167622797 5902786 complement(1068113..1069348) 1 NC_010334.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 1069348 5902786 Shal_0857 Shewanella halifaxensis HAW-EB4 ATP-dependent RNA helicase SrmB YP_001673091.1 1068113 R 458817 CDS YP_001673092.1 167622798 5902915 complement(1069418..1070158) 1 NC_010334.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_0768 methyltransferase small; methyltransferase small 1070158 5902915 Shal_0858 Shewanella halifaxensis HAW-EB4 methyltransferase small YP_001673092.1 1069418 R 458817 CDS YP_001673093.1 167622799 5902916 1070680..1072023 1 NC_010334.1 PFAM: branched-chain amino acid transport system II carrier protein; KEGG: slo:Shew_0769 branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 1072023 5902916 Shal_0859 Shewanella halifaxensis HAW-EB4 branched-chain amino acid transport system II carrier protein YP_001673093.1 1070680 D 458817 CDS YP_001673094.1 167622800 5902837 1072501..1073403 1 NC_010334.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sbm:Shew185_3524 tyrosine recombinase XerD; tyrosine recombinase XerD 1073403 5902837 Shal_0860 Shewanella halifaxensis HAW-EB4 tyrosine recombinase XerD YP_001673094.1 1072501 D 458817 CDS YP_001673095.1 167622801 5902838 1073700..1074428 1 NC_010334.1 KEGG: son:SO_0951 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 1074428 5902838 Shal_0861 Shewanella halifaxensis HAW-EB4 thiol:disulfide interchange protein DsbC YP_001673095.1 1073700 D 458817 CDS YP_001673096.1 167622802 5902812 1074563..1076287 1 NC_010334.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: slo:Shew_0772 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 1076287 5902812 Shal_0862 Shewanella halifaxensis HAW-EB4 single-stranded-DNA-specific exonuclease RecJ YP_001673096.1 1074563 D 458817 CDS YP_001673097.1 167622803 5903414 complement(1076487..1076966) 1 NC_010334.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: ppr:PBPRA0970 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1076966 5903414 Shal_0863 Shewanella halifaxensis HAW-EB4 AsnC family transcriptional regulator YP_001673097.1 1076487 R 458817 CDS YP_001673098.1 167622804 5903415 1077194..1078507 1 NC_010334.1 PFAM: protein of unknown function DUF1063; KEGG: ppr:PBPRB0240 hypothetical inner membrane protein; hypothetical protein 1078507 5903415 Shal_0864 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673098.1 1077194 D 458817 CDS YP_001673099.1 167622805 5904447 1079312..1080640 1 NC_010334.1 KEGG: vfi:VF0643 serine transporter; serine transporter 1080640 5904447 Shal_0865 Shewanella halifaxensis HAW-EB4 serine transporter YP_001673099.1 1079312 D 458817 CDS YP_001673100.1 167622806 5904448 1081339..1081836 1 NC_010334.1 hypothetical protein 1081836 5904448 Shal_0866 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673100.1 1081339 D 458817 CDS YP_001673101.1 167622807 5904517 complement(1082541..1083851) 1 NC_010334.1 PFAM: FAD dependent oxidoreductase; KEGG: rba:RB5278 D-amino acid dehydrogenase, small chain; FAD dependent oxidoreductase 1083851 5904517 Shal_0867 Shewanella halifaxensis HAW-EB4 FAD dependent oxidoreductase YP_001673101.1 1082541 R 458817 CDS YP_001673102.1 167622808 5904518 complement(1084262..1085299) 1 NC_010334.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: hch:HCH_00069 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; AraC family transcriptional regulator 1085299 5904518 Shal_0868 Shewanella halifaxensis HAW-EB4 AraC family transcriptional regulator YP_001673102.1 1084262 R 458817 CDS YP_001673103.1 167622809 5903196 1085427..1086041 1 NC_010334.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ppu:PP_3565 transporter, LysE family; lysine exporter protein LysE/YggA 1086041 5903196 Shal_0869 Shewanella halifaxensis HAW-EB4 lysine exporter protein LysE/YggA YP_001673103.1 1085427 D 458817 CDS YP_001673104.1 167622810 5904687 complement(1086324..1086986) 1 NC_010334.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1086986 5904687 Shal_0870 Shewanella halifaxensis HAW-EB4 ribose-5-phosphate isomerase A YP_001673104.1 1086324 R 458817 CDS YP_001673105.1 167622811 5904688 1087267..1088211 1 NC_010334.1 PFAM: protein of unknown function DUF808; KEGG: shm:Shewmr7_1013 protein of unknown function DUF808; hypothetical protein 1088211 5904688 Shal_0871 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673105.1 1087267 D 458817 CDS YP_001673106.1 167622812 5904706 1088255..1089388 1 NC_010334.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pha:PSHAa1702 hypothetical protein; endonuclease/exonuclease/phosphatase 1089388 5904706 Shal_0872 Shewanella halifaxensis HAW-EB4 endonuclease/exonuclease/phosphatase YP_001673106.1 1088255 D 458817 CDS YP_001673107.1 167622813 5904707 complement(1089681..1090181) 1 NC_010334.1 PFAM: MORN variant repeat protein; KEGG: fnu:FN0738 hypothetical exported 24-amino acid repeat protein; MORN repeat-containing protein 1090181 5904707 Shal_0873 Shewanella halifaxensis HAW-EB4 MORN repeat-containing protein YP_001673107.1 1089681 R 458817 CDS YP_001673108.1 167622814 5906243 1090389..1092155 1 NC_010334.1 KEGG: shn:Shewana3_3482 alkaline phosphatase; alkaline phosphatase 1092155 5906243 Shal_0874 Shewanella halifaxensis HAW-EB4 alkaline phosphatase YP_001673108.1 1090389 D 458817 CDS YP_001673109.1 167622815 5906244 1092602..1093162 1 NC_010334.1 PFAM: phosphoribosyltransferase; KEGG: slo:Shew_0833 hypoxanthine-guanine phosphoribosyltransferase; phosphoribosyltransferase 1093162 5906244 Shal_0875 Shewanella halifaxensis HAW-EB4 phosphoribosyltransferase YP_001673109.1 1092602 D 458817 CDS YP_001673110.1 167622816 5906220 complement(1093519..1093731) 1 NC_010334.1 KEGG: slo:Shew_0834 hypothetical protein; hypothetical protein 1093731 5906220 Shal_0876 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673110.1 1093519 R 458817 CDS YP_001673111.1 167622817 5903168 complement(1093976..1096645) 1 NC_010334.1 TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: son:SO_1059 aminopeptidase N; aminopeptidase N 1096645 5903168 Shal_0877 Shewanella halifaxensis HAW-EB4 aminopeptidase N YP_001673111.1 1093976 R 458817 CDS YP_001673112.1 167622818 5903169 complement(1096915..1097520) 1 NC_010334.1 TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: shn:Shewana3_0898 conserved hypothetical protein; membrane lipoprotein lipid attachment site 1097520 5903169 Shal_0878 Shewanella halifaxensis HAW-EB4 membrane lipoprotein lipid attachment site YP_001673112.1 1096915 R 458817 CDS YP_001673113.1 167622819 5904205 complement(1097532..1098899) 1 NC_010334.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sbm:Shew185_3477 tetratricopeptide TPR_2 repeat protein; hypothetical protein 1098899 5904205 Shal_0879 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673113.1 1097532 R 458817 CDS YP_001673114.1 167622820 5904206 complement(1099194..1099436) 1 NC_010334.1 PFAM: SlyX family protein; KEGG: slo:Shew_0838 SlyX family protein; SlyX family protein 1099436 5904206 Shal_0880 Shewanella halifaxensis HAW-EB4 SlyX family protein YP_001673114.1 1099194 R 458817 CDS YP_001673115.1 167622821 5906034 1099894..1100664 1 NC_010334.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_0840 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1100664 5906034 Shal_0881 Shewanella halifaxensis HAW-EB4 FKBP-type peptidylprolyl isomerase YP_001673115.1 1099894 D 458817 CDS YP_001673116.1 167622822 5906035 complement(1100734..1102059) 1 NC_010334.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: slo:Shew_2784 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 1102059 5906035 Shal_0882 Shewanella halifaxensis HAW-EB4 PA-phosphatase-like phosphoesterase YP_001673116.1 1100734 R 458817 CDS YP_001673117.1 167622823 5905966 1102238..1102609 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: slo:Shew_0841 uncharacterized conserved protein UCP006287; hypothetical protein 1102609 5905966 Shal_0883 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673117.1 1102238 D 458817 CDS YP_001673118.1 167622824 5905967 complement(1102701..1103336) 1 NC_010334.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: slo:Shew_0842 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 1103336 5905967 Shal_0884 Shewanella halifaxensis HAW-EB4 two component LuxR family transcriptional regulator YP_001673118.1 1102701 R 458817 CDS YP_001673119.1 167622825 5906732 complement(1103429..1105141) 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: slo:Shew_0843 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; nitrate/nitrite sensor protein NarQ 1105141 5906732 Shal_0885 Shewanella halifaxensis HAW-EB4 nitrate/nitrite sensor protein NarQ YP_001673119.1 1103429 R 458817 CDS YP_001673120.1 167622826 5906669 1105383..1106786 1 NC_010334.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 1106786 nrfA 5906669 nrfA Shewanella halifaxensis HAW-EB4 cytochrome c552 YP_001673120.1 1105383 D 458817 CDS YP_001673121.1 167622827 5906670 complement(1106877..1107419) 1 NC_010334.1 PFAM: isochorismatase hydrolase; KEGG: shw:Sputw3181_0699 isochorismatase hydrolase; isochorismatase hydrolase 1107419 5906670 Shal_0887 Shewanella halifaxensis HAW-EB4 isochorismatase hydrolase YP_001673121.1 1106877 R 458817 CDS YP_001673122.1 167622828 5906570 1107683..1108021 1 NC_010334.1 PFAM: nitrogen regulatory protein P-II; KEGG: sdn:Sden_2905 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1108021 5906570 Shal_0888 Shewanella halifaxensis HAW-EB4 nitrogen regulatory protein P-II YP_001673122.1 1107683 D 458817 CDS YP_001673123.1 167622829 5906571 1108034..1109284 1 NC_010334.1 PFAM: Rh family protein/ammonium transporter; KEGG: sfr:Sfri_0624 Rh family protein/ammonium transporter; Rh family protein/ammonium transporter 1109284 5906571 Shal_0889 Shewanella halifaxensis HAW-EB4 Rh family protein/ammonium transporter YP_001673123.1 1108034 D 458817 CDS YP_001673124.1 167622830 5906568 1109585..1109851 1 NC_010334.1 KEGG: slo:Shew_0848 hypothetical protein; hypothetical protein 1109851 5906568 Shal_0890 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673124.1 1109585 D 458817 CDS YP_001673125.1 167622831 5906569 1109935..1111137 1 NC_010334.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: slo:Shew_0849 TPR repeat-containing protein; hypothetical protein 1111137 5906569 Shal_0891 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673125.1 1109935 D 458817 CDS YP_001673126.1 167622832 5906537 1111617..1112672 1 NC_010334.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1112672 5906537 Shal_0892 Shewanella halifaxensis HAW-EB4 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001673126.1 1111617 D 458817 CDS YP_001673127.1 167622833 5906440 complement(1112737..1112853) 1 NC_010334.1 KEGG: shn:Shewana3_3527 hypothetical protein; hypothetical protein 1112853 5906440 Shal_0893 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673127.1 1112737 R 458817 CDS YP_001673128.1 167622834 5906441 1113255..1115036 1 NC_010334.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0853 ABC transporter-related protein; ABC transporter-like protein 1115036 5906441 Shal_0894 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001673128.1 1113255 D 458817 CDS YP_001673129.1 167622835 5906368 complement(1115402..1115533) 1 NC_010334.1 KEGG: sbm:Shew185_3700 hypothetical protein; hypothetical protein 1115533 5906368 Shal_0895 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673129.1 1115402 R 458817 CDS YP_001673130.1 167622836 5906369 1116145..1116894 1 NC_010334.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: shw:Sputw3181_0711 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit 1116894 5906369 Shal_0896 Shewanella halifaxensis HAW-EB4 oxidoreductase FAD/NAD(P)-binding subunit YP_001673130.1 1116145 D 458817 CDS YP_001673131.1 167622837 5906225 1117103..1118110 1 NC_010334.1 PFAM: extracellular solute-binding protein family 1; KEGG: slo:Shew_0861 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1118110 5906225 Shal_0897 Shewanella halifaxensis HAW-EB4 extracellular solute-binding protein YP_001673131.1 1117103 D 458817 CDS YP_001673132.1 167622838 5906226 1118278..1119909 1 NC_010334.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfr:Sfri_0637 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1119909 5906226 Shal_0898 Shewanella halifaxensis HAW-EB4 binding-protein-dependent transport system inner membrane protein YP_001673132.1 1118278 D 458817 CDS YP_001673133.1 167622839 5906109 1119911..1120939 1 NC_010334.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sbl:Sbal_0603 ABC transporter related; ABC transporter-like protein 1120939 5906109 Shal_0899 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001673133.1 1119911 D 458817 CDS YP_001673134.1 167622840 5906110 1121154..1122086 1 NC_010334.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: slo:Shew_0864 Dyp-type peroxidase family; Dyp-type peroxidase family protein 1122086 5906110 Shal_0900 Shewanella halifaxensis HAW-EB4 Dyp-type peroxidase family protein YP_001673134.1 1121154 D 458817 CDS YP_001673135.1 167622841 5906177 complement(1122155..1122625) 1 NC_010334.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: slo:Shew_0865 cupin 2, conserved barrel domain protein; cupin 1122625 5906177 Shal_0901 Shewanella halifaxensis HAW-EB4 cupin YP_001673135.1 1122155 R 458817 CDS YP_001673136.1 167622842 5906010 complement(1122890..1123360) 1 NC_010334.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 1123360 5906010 Shal_0902 Shewanella halifaxensis HAW-EB4 arginine repressor YP_001673136.1 1122890 R 458817 CDS YP_001673137.1 167622843 5906011 1123713..1124648 1 NC_010334.1 oxidizes malate to oxaloacetate; malate dehydrogenase 1124648 5906011 Shal_0903 Shewanella halifaxensis HAW-EB4 malate dehydrogenase YP_001673137.1 1123713 D 458817 CDS YP_001673138.1 167622844 5905234 complement(1124758..1125729) 1 NC_010334.1 PFAM: Polyprenyl synthetase; KEGG: slo:Shew_0868 trans-hexaprenyltranstransferase; polyprenyl synthetase 1125729 5905234 Shal_0904 Shewanella halifaxensis HAW-EB4 polyprenyl synthetase YP_001673138.1 1124758 R 458817 CDS YP_001673139.1 167622845 5905235 1126013..1126324 1 NC_010334.1 PFAM: ribosomal protein L21; KEGG: slo:Shew_0869 ribosomal protein L21; 50S ribosomal protein L21 1126324 rplU 5905235 rplU Shewanella halifaxensis HAW-EB4 50S ribosomal protein L21 YP_001673139.1 1126013 D 458817 CDS YP_001673140.1 167622846 5905080 1126340..1126594 1 NC_010334.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1126594 rpmA 5905080 rpmA Shewanella halifaxensis HAW-EB4 50S ribosomal protein L27 YP_001673140.1 1126340 D 458817 CDS YP_001673141.1 167622847 5905081 1126732..1127895 1 NC_010334.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1127895 obgE 5905081 obgE Shewanella halifaxensis HAW-EB4 GTPase ObgE YP_001673141.1 1126732 D 458817 CDS YP_001673142.1 167622848 5904764 1127925..1128683 1 NC_010334.1 PFAM: protein of unknown function DUF1212; KEGG: slo:Shew_0872 protein of unknown function DUF1212; hypothetical protein 1128683 5904764 Shal_0908 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673142.1 1127925 D 458817 CDS YP_001673143.1 167622849 5903986 1128683..1129156 1 NC_010334.1 KEGG: sbm:Shew185_1040 hypothetical protein; hypothetical protein 1129156 5903986 Shal_0909 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673143.1 1128683 D 458817 CDS YP_001673144.1 167622850 5903987 1129261..1129743 1 NC_010334.1 PFAM: dihydrofolate reductase region; KEGG: she:Shewmr4_0900 dihydrofolate reductase; dihydrofolate reductase 1129743 5903987 Shal_0910 Shewanella halifaxensis HAW-EB4 dihydrofolate reductase YP_001673144.1 1129261 D 458817 CDS YP_001673145.1 167622851 5906022 1129843..1130238 1 NC_010334.1 KEGG: sfr:Sfri_3083 hypothetical protein; hypothetical protein 1130238 5906022 Shal_0911 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673145.1 1129843 D 458817 CDS YP_001673146.1 167622852 5906023 complement(1130408..1132429) 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: slo:Shew_0876 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1132429 5906023 Shal_0912 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis sensory transducer YP_001673146.1 1130408 R 458817 CDS YP_001673147.1 167622853 5905280 complement(1132530..1133363) 1 NC_010334.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 1133363 apaH 5905280 apaH Shewanella halifaxensis HAW-EB4 diadenosine tetraphosphatase YP_001673147.1 1132530 R 458817 CDS YP_001673148.1 167622854 5905281 complement(1133397..1133777) 1 NC_010334.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 1133777 apaG 5905281 apaG Shewanella halifaxensis HAW-EB4 ApaG protein YP_001673148.1 1133397 R 458817 CDS YP_001673149.1 167622855 5904538 complement(1133937..1134740) 1 NC_010334.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1134740 ksgA 5904538 ksgA Shewanella halifaxensis HAW-EB4 dimethyladenosine transferase YP_001673149.1 1133937 R 458817 CDS YP_001673150.1 167622856 5904539 complement(1134757..1135740) 1 NC_010334.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 1135740 pdxA 5904539 pdxA Shewanella halifaxensis HAW-EB4 4-hydroxythreonine-4-phosphate dehydrogenase YP_001673150.1 1134757 R 458817 CDS YP_001673151.1 167622857 5904619 complement(1135746..1137050) 1 NC_010334.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: sbm:Shew185_1048 SurA domain protein; SurA domain-containing protein 1137050 5904619 Shal_0917 Shewanella halifaxensis HAW-EB4 SurA domain-containing protein YP_001673151.1 1135746 R 458817 CDS YP_001673152.1 167622858 5903449 complement(1137178..1139502) 1 NC_010334.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: slo:Shew_0882 organic solvent tolerance protein; organic solvent tolerance protein 1139502 5903449 Shal_0918 Shewanella halifaxensis HAW-EB4 organic solvent tolerance protein YP_001673152.1 1137178 R 458817 CDS YP_001673153.1 167622859 5903450 1139658..1140668 1 NC_010334.1 PFAM: aminoglycoside phosphotransferase; KEGG: shm:Shewmr7_3111 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 1140668 5903450 Shal_0919 Shewanella halifaxensis HAW-EB4 aminoglycoside phosphotransferase YP_001673153.1 1139658 D 458817 CDS YP_001673154.1 167622860 5905595 1140669..1141337 1 NC_010334.1 PFAM: Nucleotidyl transferase; KEGG: shn:Shewana3_3204 nucleotidyl transferase; nucleotidyl transferase 1141337 5905595 Shal_0920 Shewanella halifaxensis HAW-EB4 nucleotidyl transferase YP_001673154.1 1140669 D 458817 CDS YP_001673155.1 167622861 5905596 1141337..1142116 1 NC_010334.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 1142116 djlA 5905596 djlA Shewanella halifaxensis HAW-EB4 Dna-J like membrane chaperone protein YP_001673155.1 1141337 D 458817 CDS YP_001673156.1 167622862 5904582 1142149..1142760 1 NC_010334.1 KEGG: slo:Shew_0886 hypothetical protein; hypothetical protein 1142760 5904582 Shal_0922 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673156.1 1142149 D 458817 CDS YP_001673157.1 167622863 5904583 1142831..1143784 1 NC_010334.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: shm:Shewmr7_3107 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein; D-isomer specific 2-hydroxyacid dehydrogenase 1143784 5904583 Shal_0923 Shewanella halifaxensis HAW-EB4 D-isomer specific 2-hydroxyacid dehydrogenase YP_001673157.1 1142831 D 458817 CDS YP_001673158.1 167622864 5905527 complement(1143906..1145081) 1 NC_010334.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1145081 purT 5905527 purT Shewanella halifaxensis HAW-EB4 phosphoribosylglycinamide formyltransferase 2 YP_001673158.1 1143906 R 458817 CDS YP_001673159.1 167622865 5906401 1145386..1145772 1 NC_010334.1 KEGG: slo:Shew_0889 hypothetical protein; hypothetical protein 1145772 5906401 Shal_0925 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673159.1 1145386 D 458817 CDS YP_001673160.1 167622866 5906402 1145774..1146910 1 NC_010334.1 PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_0890 secretion protein HlyD family protein; secretion protein HlyD family protein 1146910 5906402 Shal_0926 Shewanella halifaxensis HAW-EB4 secretion protein HlyD family protein YP_001673160.1 1145774 D 458817 CDS YP_001673161.1 167622867 5906688 1147051..1148520 1 NC_010334.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: slo:Shew_0892 AAA ATPase, central domain protein; ATPase central domain-containing protein 1148520 5906688 Shal_0927 Shewanella halifaxensis HAW-EB4 ATPase central domain-containing protein YP_001673161.1 1147051 D 458817 CDS YP_001673162.1 167622868 5906689 complement(1148604..1149161) 1 NC_010334.1 KEGG: sbm:Shew185_1068 hypothetical protein; hypothetical protein 1149161 5906689 Shal_0928 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673162.1 1148604 R 458817 CDS YP_001673163.1 167622869 5906072 1149279..1149590 1 NC_010334.1 PFAM: protein of unknown function DUF1289; KEGG: slo:Shew_0894 protein of unknown function DUF1289; hypothetical protein 1149590 5906072 Shal_0929 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673163.1 1149279 D 458817 CDS YP_001673164.1 167622870 5906073 complement(1149577..1150845) 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: shn:Shewana3_3185 ATP-binding region, ATPase domain protein domain protein; histidine kinase 1150845 5906073 Shal_0930 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001673164.1 1149577 R 458817 CDS YP_001673165.1 167622871 5906508 complement(1150864..1151577) 1 NC_010334.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_0896 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1151577 5906508 Shal_0931 Shewanella halifaxensis HAW-EB4 two component transcriptional regulator YP_001673165.1 1150864 R 458817 CDS YP_001673166.1 167622872 5906509 complement(1151577..1151942) 1 NC_010334.1 KEGG: slo:Shew_0897 hypothetical protein; hypothetical protein 1151942 5906509 Shal_0932 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673166.1 1151577 R 458817 CDS YP_001673167.1 167622873 5905669 complement(1151999..1152874) 1 NC_010334.1 PFAM: MltA-interacting MipA family protein; KEGG: slo:Shew_0898 MltA-interacting MipA family protein; MltA-interacting MipA family protein 1152874 5905669 Shal_0933 Shewanella halifaxensis HAW-EB4 MltA-interacting MipA family protein YP_001673167.1 1151999 R 458817 CDS YP_001673168.1 167622874 5906555 1153124..1153660 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: saz:Sama_2792 conserved hypothetical acetyltransferase; N-acetyltransferase GCN5 1153660 5906555 Shal_0934 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001673168.1 1153124 D 458817 CDS YP_001673169.1 167622875 5906556 complement(1153657..1154142) 1 NC_010334.1 KEGG: shm:Shewmr7_3082 hypothetical protein; hypothetical protein 1154142 5906556 Shal_0935 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673169.1 1153657 R 458817 CDS YP_001673170.1 167622876 5904044 1154279..1154614 1 NC_010334.1 PFAM: Protein of unknown function DUF1971; KEGG: sbm:Shew185_1077 protein of unknown function DUF1971; hypothetical protein 1154614 5904044 Shal_0936 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673170.1 1154279 D 458817 CDS YP_001673171.1 167622877 5904045 complement(1154658..1155542) 1 NC_010334.1 KEGG: shm:Shewmr7_1169 UspA domain protein; UspA domain-containing protein 1155542 5904045 Shal_0937 Shewanella halifaxensis HAW-EB4 UspA domain-containing protein YP_001673171.1 1154658 R 458817 CDS YP_001673172.1 167622878 5903684 complement(1156599..1157018) 1 NC_010334.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: slo:Shew_0913 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1157018 5903684 Shal_0938 Shewanella halifaxensis HAW-EB4 glyoxalase/bleomycin resistance protein/dioxygenase YP_001673172.1 1156599 R 458817 CDS YP_001673173.1 167622879 5903685 complement(1157110..1157718) 1 NC_010334.1 PFAM: NADPH-dependent FMN reductase; KEGG: slo:Shew_0914 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1157718 5903685 Shal_0939 Shewanella halifaxensis HAW-EB4 NADPH-dependent FMN reductase YP_001673173.1 1157110 R 458817 CDS YP_001673174.1 167622880 5906565 1157856..1158485 1 NC_010334.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: cps:CPS_0091 hypothetical protein; putative transcriptional regulator 1158485 5906565 Shal_0940 Shewanella halifaxensis HAW-EB4 putative transcriptional regulator YP_001673174.1 1157856 D 458817 CDS YP_001673175.1 167622881 5904937 1158492..1159196 1 NC_010334.1 PFAM: pseudouridine synthase; KEGG: shw:Sputw3181_3146 pseudouridine synthase; pseudouridine synthase 1159196 5904937 Shal_0941 Shewanella halifaxensis HAW-EB4 pseudouridine synthase YP_001673175.1 1158492 D 458817 CDS YP_001673176.1 167622882 5904938 1159695..1160297 1 NC_010334.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: vpa:VP0620 hypothetical protein; GPR1/FUN34/yaaH family protein 1160297 5904938 Shal_0942 Shewanella halifaxensis HAW-EB4 GPR1/FUN34/yaaH family protein YP_001673176.1 1159695 D 458817 CDS YP_001673177.1 167622883 5905901 complement(1160408..1161940) 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_0920 major facilitator superfamily MFS_1; major facilitator transporter 1161940 5905901 Shal_0943 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001673177.1 1160408 R 458817 CDS YP_001673178.1 167622884 5905902 complement(1162367..1163056) 1 NC_010334.1 PFAM: LrgB family protein; KEGG: son:SO_1048 hypothetical protein; LrgB family protein 1163056 5905902 Shal_0944 Shewanella halifaxensis HAW-EB4 LrgB family protein YP_001673178.1 1162367 R 458817 CDS YP_001673179.1 167622885 5906374 complement(1163053..1163538) 1 NC_010334.1 PFAM: LrgA family protein; KEGG: shn:Shewana3_0885 LrgA family protein; LrgA family protein 1163538 5906374 Shal_0945 Shewanella halifaxensis HAW-EB4 LrgA family protein YP_001673179.1 1163053 R 458817 CDS YP_001673180.1 167622886 5906375 1163647..1164549 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: son:SO_1046 transcriptional regulator, LysR family; LysR family transcriptional regulator 1164549 5906375 Shal_0946 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001673180.1 1163647 D 458817 CDS YP_001673181.1 167622887 5906985 complement(1164778..1164942) 1 NC_010334.1 PFAM: protein of unknown function UPF0057; KEGG: slo:Shew_0100 protein of unknown function UPF0057; hypothetical protein 1164942 5906985 Shal_0947 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673181.1 1164778 R 458817 CDS YP_001673182.1 167622888 5906986 complement(1165103..1165696) 1 NC_010334.1 PFAM: AMMECR1 domain protein; KEGG: ppr:PBPRA1250 hypothetical protein; AMMECR1 domain-containing protein 1165696 5906986 Shal_0948 Shewanella halifaxensis HAW-EB4 AMMECR1 domain-containing protein YP_001673182.1 1165103 R 458817 CDS YP_001673183.1 167622889 5903763 complement(1165674..1166483) 1 NC_010334.1 PFAM: protein of unknown function DUF52; KEGG: azo:azo1680 hypothetical protein; hypothetical protein 1166483 5903763 Shal_0949 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673183.1 1165674 R 458817 CDS YP_001673184.1 167622890 5903646 1166557..1167666 1 NC_010334.1 PFAM: Radical SAM domain protein; KEGG: mtf:TBFG_13159 pyruvate formate lyase activating protein PflA; radical SAM domain-containing protein 1167666 5903646 Shal_0950 Shewanella halifaxensis HAW-EB4 radical SAM domain-containing protein YP_001673184.1 1166557 D 458817 CDS YP_001673185.1 167622891 5903647 complement(1167796..1170759) 1 NC_010334.1 KEGG: slo:Shew_0921 hypothetical protein; hypothetical protein 1170759 5903647 Shal_0951 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673185.1 1167796 R 458817 CDS YP_001673186.1 167622892 5903631 1171157..1172878 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: slo:Shew_0922 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1172878 5903631 Shal_0952 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis sensory transducer YP_001673186.1 1171157 D 458817 CDS YP_001673187.1 167622893 5903632 complement(1173014..1175929) 1 NC_010334.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1175929 valS 5903632 valS Shewanella halifaxensis HAW-EB4 valyl-tRNA synthetase YP_001673187.1 1173014 R 458817 CDS YP_001673188.1 167622894 5904040 complement(1175949..1176452) 1 NC_010334.1 PFAM: DNA polymerase III chi subunit HolC; KEGG: slo:Shew_0924 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit HolC 1176452 5904040 Shal_0954 Shewanella halifaxensis HAW-EB4 DNA polymerase III chi subunit HolC YP_001673188.1 1175949 R 458817 CDS YP_001673189.1 167622895 5904041 1176681..1177922 1 NC_010334.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sbm:Shew185_3406 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 1177922 5904041 Shal_0955 Shewanella halifaxensis HAW-EB4 DEAD/DEAH box helicase YP_001673189.1 1176681 D 458817 CDS YP_001673190.1 167622896 5904523 complement(1177996..1179033) 1 NC_010334.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: son:SO_3392 oxidoreductase, FMN-binding; NADH:flavin oxidoreductase 1179033 5904523 Shal_0956 Shewanella halifaxensis HAW-EB4 NADH:flavin oxidoreductase YP_001673190.1 1177996 R 458817 CDS YP_001673191.1 167622897 5904509 1179218..1180126 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VFA0031 transcriptional regulators, LysR family; LysR family transcriptional regulator 1180126 5904509 Shal_0957 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001673191.1 1179218 D 458817 CDS YP_001673192.1 167622898 5904510 complement(1180210..1180743) 1 NC_010334.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: vfi:VFA0032 thioredoxin peroxidase; alkyl hydroperoxide reductase 1180743 5904510 Shal_0958 Shewanella halifaxensis HAW-EB4 alkyl hydroperoxide reductase YP_001673192.1 1180210 R 458817 CDS YP_001673193.1 167622899 5904410 complement(1180846..1181382) 1 NC_010334.1 KEGG: swi:Swit_1025 hypothetical protein; hypothetical protein 1181382 5904410 Shal_0959 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673193.1 1180846 R 458817 CDS YP_001673194.1 167622900 5904411 complement(1181631..1181900) 1 NC_010334.1 hypothetical protein 1181900 5904411 Shal_0960 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673194.1 1181631 R 458817 CDS YP_001673195.1 167622901 5904297 1182215..1183537 1 NC_010334.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO_4351 CBS domain protein; hypothetical protein 1183537 5904297 Shal_0961 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673195.1 1182215 D 458817 CDS YP_001673196.1 167622902 5904298 complement(1183832..1185340) 1 NC_010334.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1185340 5904298 Shal_0962 Shewanella halifaxensis HAW-EB4 leucyl aminopeptidase YP_001673196.1 1183832 R 458817 CDS YP_001673197.1 167622903 5904232 1185563..1186678 1 NC_010334.1 PFAM: permease YjgP/YjgQ family protein; KEGG: saz:Sama_0796 hypothetical protein; YjgP/YjgQ family permease 1186678 5904232 Shal_0963 Shewanella halifaxensis HAW-EB4 YjgP/YjgQ family permease YP_001673197.1 1185563 D 458817 CDS YP_001673198.1 167622904 5904233 1186675..1187733 1 NC_010334.1 PFAM: permease YjgP/YjgQ family protein; KEGG: slo:Shew_0941 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 1187733 5904233 Shal_0964 Shewanella halifaxensis HAW-EB4 YjgP/YjgQ family permease YP_001673198.1 1186675 D 458817 CDS YP_001673199.1 167622905 5902995 complement(1187886..1188410) 1 NC_010334.1 PFAM: RDD domain containing protein; KEGG: slo:Shew_0942 RDD domain containing protein; RDD domain-containing protein 1188410 5902995 Shal_0965 Shewanella halifaxensis HAW-EB4 RDD domain-containing protein YP_001673199.1 1187886 R 458817 CDS YP_001673200.1 167622906 5903471 complement(1188468..1188722) 1 NC_010334.1 KEGG: slo:Shew_0943 hypothetical protein; hypothetical protein 1188722 5903471 Shal_0966 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673200.1 1188468 R 458817 CDS YP_001673201.1 167622907 5903472 complement(1188768..1189247) 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_0944 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1189247 5903472 Shal_0967 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001673201.1 1188768 R 458817 CDS YP_001673202.1 167622908 5904081 complement(1189317..1190807) 1 NC_010334.1 PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: shn:Shewana3_2999 peptidase M32, carboxypeptidase Taq metallopeptidase; carboxypeptidase Taq 1190807 5904081 Shal_0968 Shewanella halifaxensis HAW-EB4 carboxypeptidase Taq YP_001673202.1 1189317 R 458817 CDS YP_001673203.1 167622909 5904082 1191313..1193136 1 NC_010334.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: slo:Shew_2720 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 1193136 5904082 Shal_0969 Shewanella halifaxensis HAW-EB4 peptidase S8/S53 subtilisin kexin sedolisin YP_001673203.1 1191313 D 458817 CDS YP_001673204.1 167622910 5904781 complement(1193247..1193885) 1 NC_010334.1 KEGG: son:SO_1380 hypothetical protein; hypothetical protein 1193885 5904781 Shal_0970 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673204.1 1193247 R 458817 CDS YP_001673205.1 167622911 5904782 complement(1194101..1195399) 1 NC_010334.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shm:Shewmr7_2892 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 1195399 5904782 Shal_0971 Shewanella halifaxensis HAW-EB4 DEAD/DEAH box helicase YP_001673205.1 1194101 R 458817 CDS YP_001673206.1 167622912 5904675 complement(1195595..1197382) 1 NC_010334.1 PFAM: creatinase; peptidase M24; KEGG: sbl:Sbal_3085 peptidase M24; peptidase M24 1197382 5904675 Shal_0972 Shewanella halifaxensis HAW-EB4 peptidase M24 YP_001673206.1 1195595 R 458817 CDS YP_001673207.1 167622913 5904728 1197894..1199111 1 NC_010334.1 PFAM: peptidase M24; KEGG: slo:Shew_0955 peptidase M24; peptidase M24 1199111 5904728 Shal_0974 Shewanella halifaxensis HAW-EB4 peptidase M24 YP_001673207.1 1197894 D 458817 CDS YP_001673208.1 167622914 5904637 complement(1199379..1199849) 1 NC_010334.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: shn:Shewana3_2983 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1199849 5904637 Shal_0975 Shewanella halifaxensis HAW-EB4 FKBP-type peptidylprolyl isomerase YP_001673208.1 1199379 R 458817 CDS YP_001673209.1 167622915 5904638 1200147..1201217 1 NC_010334.1 PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: son:SO_A0114 outer membrane protein A; OmpA/MotB domain-containing protein 1201217 5904638 Shal_0976 Shewanella halifaxensis HAW-EB4 OmpA/MotB domain-containing protein YP_001673209.1 1200147 D 458817 CDS YP_001673210.1 167622916 5904576 1201220..1206244 1 NC_010334.1 PFAM: Ig domain protein group 2 domain protein; KEGG: sbl:Sbal_4398 Ig domain protein, group 2 domain protein; Ig domain-containing protein 1206244 5904576 Shal_0977 Shewanella halifaxensis HAW-EB4 Ig domain-containing protein YP_001673210.1 1201220 D 458817 CDS YP_001673211.1 167622917 5904577 complement(1206333..1206962) 1 NC_010334.1 PFAM: Cold-shock protein DNA-binding; protein of unknown function DUF1294; SMART: Cold shock protein; KEGG: sdn:Sden_2865 protein of unknown function DUF1294; cold-shock DNA-binding domain-containing protein 1206962 5904577 Shal_0978 Shewanella halifaxensis HAW-EB4 cold-shock DNA-binding domain-containing protein YP_001673211.1 1206333 R 458817 CDS YP_001673212.1 167622918 5904569 complement(1207079..1207372) 1 NC_010334.1 PFAM: regulatory protein ArsR; KEGG: ppr:PBPRA2744 hypothetical transcriptional regulator, ArsR family; ArsR family transcriptional regulator 1207372 5904569 Shal_0979 Shewanella halifaxensis HAW-EB4 ArsR family transcriptional regulator YP_001673212.1 1207079 R 458817 CDS YP_001673213.1 167622919 5904570 complement(1207484..1207975) 1 NC_010334.1 KEGG: shm:Shewmr7_2880 hypothetical protein; hypothetical protein 1207975 5904570 Shal_0980 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673213.1 1207484 R 458817 CDS YP_001673214.1 167622920 5904378 1208143..1209060 1 NC_010334.1 PFAM: protein of unknown function DUF368; KEGG: slo:Shew_0960 protein of unknown function DUF368; hypothetical protein 1209060 5904378 Shal_0981 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673214.1 1208143 D 458817 CDS YP_001673215.1 167622921 5904313 complement(1209203..1209547) 1 NC_010334.1 KEGG: slo:Shew_0961 hypothetical protein; hypothetical protein 1209547 5904313 Shal_0982 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673215.1 1209203 R 458817 CDS YP_001673216.1 167622922 5904314 complement(1209990..1210724) 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: slo:Shew_0963 hypothetical protein; hypothetical protein 1210724 5904314 Shal_0983 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673216.1 1209990 R 458817 CDS YP_001673217.1 167622923 5904245 complement(1210891..1211262) 1 NC_010334.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: slo:Shew_0964 protein of unknown function DUF861, cupin_3; hypothetical protein 1211262 5904245 Shal_0984 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673217.1 1210891 R 458817 CDS YP_001673218.1 167622924 5904246 complement(1211343..1212848) 1 NC_010334.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: slo:Shew_0965 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1212848 5904246 Shal_0985 Shewanella halifaxensis HAW-EB4 methylmalonate-semialdehyde dehydrogenase YP_001673218.1 1211343 R 458817 CDS YP_001673219.1 167622925 5903347 complement(1212958..1214298) 1 NC_010334.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 1214298 5903347 Shal_0986 Shewanella halifaxensis HAW-EB4 beta alanine--pyruvate transaminase YP_001673219.1 1212958 R 458817 CDS YP_001673220.1 167622926 5903348 1214585..1216084 1 NC_010334.1 PFAM: aldehyde dehydrogenase; KEGG: shw:Sputw3181_3079 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 1216084 5903348 Shal_0987 Shewanella halifaxensis HAW-EB4 aldehyde dehydrogenase YP_001673220.1 1214585 D 458817 CDS YP_001673221.1 167622927 5902742 1216324..1217550 1 NC_010334.1 PFAM: regulatory protein MerR; Methyltransferase type 11; KEGG: dps:DPPB100 probable transcription regulator; MerR family transcriptional regulator 1217550 5902742 Shal_0988 Shewanella halifaxensis HAW-EB4 MerR family transcriptional regulator YP_001673221.1 1216324 D 458817 CDS YP_001673222.1 167622928 5903105 1217664..1218200 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dde:Dde_3171 acetyltransferase; N-acetyltransferase GCN5 1218200 5903105 Shal_0989 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001673222.1 1217664 D 458817 CDS YP_001673223.1 167622929 5903106 1218290..1218883 1 NC_010334.1 TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: son:SO_3778 adenylate cyclase CyaB, putative; putative adenylyl cyclase CyaB 1218883 5903106 Shal_0990 Shewanella halifaxensis HAW-EB4 putative adenylyl cyclase CyaB YP_001673223.1 1218290 D 458817 CDS YP_001673224.1 167622930 5903404 1218927..1219619 1 NC_010334.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: dps:DP1920 hypothetical protein; aspartate racemase 1219619 5903404 Shal_0991 Shewanella halifaxensis HAW-EB4 aspartate racemase YP_001673224.1 1218927 D 458817 CDS YP_001673225.1 167622931 5903405 complement(1219728..1221035) 1 NC_010334.1 PFAM: FAD dependent oxidoreductase; KEGG: she:Shewmr4_2922 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1221035 5903405 Shal_0992 Shewanella halifaxensis HAW-EB4 FAD dependent oxidoreductase YP_001673225.1 1219728 R 458817 CDS YP_001673226.1 167622932 5902917 1221283..1221831 1 NC_010334.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: slo:Shew_0970 transcriptional regulator, XRE family; XRE family transcriptional regulator 1221831 5902917 Shal_0993 Shewanella halifaxensis HAW-EB4 XRE family transcriptional regulator YP_001673226.1 1221283 D 458817 CDS YP_001673227.1 167622933 5902918 1222329..1223090 1 NC_010334.1 PFAM: peptidase C26; KEGG: slo:Shew_0971 peptidase C26; peptidase C26 1223090 5902918 Shal_0994 Shewanella halifaxensis HAW-EB4 peptidase C26 YP_001673227.1 1222329 D 458817 CDS YP_001673228.1 167622934 5903073 1223093..1224442 1 NC_010334.1 PFAM: glutamine synthetase catalytic region; KEGG: slo:Shew_0972 glutamate--ammonia ligase; glutamate--putrescine ligase 1224442 5903073 Shal_0995 Shewanella halifaxensis HAW-EB4 glutamate--putrescine ligase YP_001673228.1 1223093 D 458817 CDS YP_001673229.1 167622935 5903074 1224720..1225820 1 NC_010334.1 PFAM: extracellular solute-binding protein family 1; KEGG: slo:Shew_0973 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1225820 5903074 Shal_0996 Shewanella halifaxensis HAW-EB4 extracellular solute-binding protein YP_001673229.1 1224720 D 458817 CDS YP_001673230.1 167622936 5902685 1225939..1227075 1 NC_010334.1 KEGG: slo:Shew_0974 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 1227075 5902685 Shal_0997 Shewanella halifaxensis HAW-EB4 spermidine/putrescine ABC transporter ATPase YP_001673230.1 1225939 D 458817 CDS YP_001673231.1 167622937 5904875 1227086..1227991 1 NC_010334.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_0975 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1227991 5904875 Shal_0998 Shewanella halifaxensis HAW-EB4 binding-protein-dependent transport system inner membrane protein YP_001673231.1 1227086 D 458817 CDS YP_001673232.1 167622938 5904876 1227988..1228803 1 NC_010334.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_0976 binding-protein-dependent transport systems inner membrane component; ornithine carbamoyltransferase 1228803 5904876 Shal_0999 Shewanella halifaxensis HAW-EB4 ornithine carbamoyltransferase YP_001673232.1 1227988 D 458817 CDS YP_001673233.1 167622939 5905114 1228969..1230291 1 NC_010334.1 PFAM: FAD dependent oxidoreductase; KEGG: slo:Shew_0977 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1230291 5905114 Shal_1000 Shewanella halifaxensis HAW-EB4 FAD dependent oxidoreductase YP_001673233.1 1228969 D 458817 CDS YP_001673234.1 167622940 5905115 1230433..1231881 1 NC_010334.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: shn:Shewana3_3092 succinic semialdehyde dehydrogenase; succinate-semialdehyde dehydrogenase 1231881 5905115 Shal_1001 Shewanella halifaxensis HAW-EB4 succinate-semialdehyde dehydrogenase YP_001673234.1 1230433 D 458817 CDS YP_001673235.1 167622941 5905112 1231929..1233206 1 NC_010334.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 1233206 5905112 Shal_1002 Shewanella halifaxensis HAW-EB4 4-aminobutyrate aminotransferase YP_001673235.1 1231929 D 458817 CDS YP_001673236.1 167622942 5905113 complement(1233304..1233735) 1 NC_010334.1 PFAM: UspA domain protein; KEGG: slo:Shew_3101 UspA domain protein; UspA domain-containing protein 1233735 5905113 Shal_1003 Shewanella halifaxensis HAW-EB4 UspA domain-containing protein YP_001673236.1 1233304 R 458817 CDS YP_001673237.1 167622943 5903388 complement(1234698..1236545) 1 NC_010334.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma-70; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 non-essential domain protein; sigma-70 region 1.2; KEGG: slo:Shew_0996 RNA polymerase, sigma 70 subunit, RpoD family; RNA polymerase sigma 70 subunit RpoD 1236545 5903388 Shal_1004 Shewanella halifaxensis HAW-EB4 RNA polymerase sigma 70 subunit RpoD YP_001673237.1 1234698 R 458817 CDS YP_001673238.1 167622944 5905339 complement(1236663..1238393) 1 NC_010334.1 KEGG: slo:Shew_0997 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase DnaG DnaB-binding; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase 1238393 5905339 Shal_1005 Shewanella halifaxensis HAW-EB4 DNA primase YP_001673238.1 1236663 R 458817 CDS YP_001673239.1 167622945 5905340 complement(1238530..1238973) 1 NC_010334.1 KEGG: slo:Shew_0998 GatB/YqeY domain protein; GatB/YqeY domain-containing protein 1238973 5905340 Shal_1006 Shewanella halifaxensis HAW-EB4 GatB/YqeY domain-containing protein YP_001673239.1 1238530 R 458817 CDS YP_001673240.1 167622946 5905391 complement(1238981..1239196) 1 NC_010334.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1239196 rpsU 5905391 rpsU Shewanella halifaxensis HAW-EB4 30S ribosomal protein S21 YP_001673240.1 1238981 R 458817 CDS YP_001673241.1 167622947 5905392 1239425..1240441 1 NC_010334.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1240441 5905392 Shal_1008 Shewanella halifaxensis HAW-EB4 putative DNA-binding/iron metalloprotein/AP endonuclease YP_001673241.1 1239425 D 458817 CDS YP_001673242.1 167622948 5905167 complement(1240507..1241130) 1 NC_010334.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: son:SO_3563 SM-20 domain protein; 2OG-Fe(II) oxygenase 1241130 5905167 Shal_1009 Shewanella halifaxensis HAW-EB4 2OG-Fe(II) oxygenase YP_001673242.1 1240507 R 458817 CDS YP_001673243.1 167622949 5905168 complement(1241434..1242033) 1 NC_010334.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 1242033 5905168 Shal_1010 Shewanella halifaxensis HAW-EB4 putative glycerol-3-phosphate acyltransferase PlsY YP_001673243.1 1241434 R 458817 CDS YP_001673244.1 167622950 5904519 1242344..1242697 1 NC_010334.1 TIGRFAM: dihydroneopterin aldolase; KEGG: slo:Shew_1002 dihydroneopterin aldolase; dihydroneopterin aldolase 1242697 5904519 Shal_1011 Shewanella halifaxensis HAW-EB4 dihydroneopterin aldolase YP_001673244.1 1242344 D 458817 CDS YP_001673245.1 167622951 5905817 1242698..1243189 1 NC_010334.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: slo:Shew_1003 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1243189 5905817 Shal_1012 Shewanella halifaxensis HAW-EB4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001673245.1 1242698 D 458817 CDS YP_001673246.1 167622952 5905818 1243214..1244014 1 NC_010334.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1244014 5905818 Shal_1013 Shewanella halifaxensis HAW-EB4 undecaprenyl pyrophosphate phosphatase YP_001673246.1 1243214 D 458817 CDS YP_001673247.1 167622953 5905674 1244069..1244902 1 NC_010334.1 KEGG: slo:Shew_1005 rRNA (guanine-N(1)-)-methyltransferase; rRNA (guanine-N(1)-)-methyltransferase 1244902 5905674 Shal_1014 Shewanella halifaxensis HAW-EB4 rRNA (guanine-N(1)-)-methyltransferase YP_001673247.1 1244069 D 458817 CDS YP_001673248.1 167622954 5905675 1244956..1245855 1 NC_010334.1 PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: slo:Shew_1006 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 1245855 5905675 Shal_1015 Shewanella halifaxensis HAW-EB4 ErfK/YbiS/YcfS/YnhG family protein YP_001673248.1 1244956 D 458817 CDS YP_001673249.1 167622955 5905725 complement(1246088..1246354) 1 NC_010334.1 KEGG: slo:Shew_1007 major outer membrane lipoprotein, putative; major outer membrane lipoprotein 1246354 5905725 Shal_1016 Shewanella halifaxensis HAW-EB4 major outer membrane lipoprotein YP_001673249.1 1246088 R 458817 CDS YP_001673250.1 167622956 5905726 complement(1246573..1247850) 1 NC_010334.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: slo:Shew_1008 metal dependent phosphohydrolase; polynucleotide adenylyltransferase/metal dependent phosphohydrolase 1247850 5905726 Shal_1017 Shewanella halifaxensis HAW-EB4 polynucleotide adenylyltransferase/metal dependent phosphohydrolase YP_001673250.1 1246573 R 458817 CDS YP_001673251.1 167622957 5905721 1248196..1249809 1 NC_010334.1 PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: slo:Shew_1009 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain-containing protein 1249809 5905721 Shal_1018 Shewanella halifaxensis HAW-EB4 peptidoglycan-binding domain-containing protein YP_001673251.1 1248196 D 458817 CDS YP_001673252.1 167622958 5905884 1249809..1250879 1 NC_010334.1 KEGG: slo:Shew_1010 general secretion pathway protein B; general secretion pathway protein B 1250879 5905884 Shal_1019 Shewanella halifaxensis HAW-EB4 general secretion pathway protein B YP_001673252.1 1249809 D 458817 CDS YP_001673253.1 167622959 5905885 complement(1250964..1252211) 1 NC_010334.1 PFAM: Citrate transporter; KEGG: shn:Shewana3_3073 citrate transporter; citrate transporter 1252211 5905885 Shal_1020 Shewanella halifaxensis HAW-EB4 citrate transporter YP_001673253.1 1250964 R 458817 CDS YP_001673254.1 167622960 5905947 complement(1252662..1253951) 1 NC_010334.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1253951 5905947 Shal_1021 Shewanella halifaxensis HAW-EB4 glutamate-1-semialdehyde aminotransferase YP_001673254.1 1252662 R 458817 CDS YP_001673255.1 167622961 5905920 complement(1254820..1255986) 1 NC_010334.1 hypothetical protein 1255986 5905920 Shal_1025 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673255.1 1254820 R 458817 CDS YP_001673256.1 167622962 5905921 complement(1256015..1256941) 1 NC_010334.1 PFAM: ApbE family lipoprotein; KEGG: vfi:VF0732 iron-sulfur cluster assembly/repair protein ApbE; ApbE family lipoprotein 1256941 5905921 Shal_1026 Shewanella halifaxensis HAW-EB4 ApbE family lipoprotein YP_001673256.1 1256015 R 458817 CDS YP_001673257.1 167622963 5905801 1257405..1258190 1 NC_010334.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1258190 5905801 Shal_1027 Shewanella halifaxensis HAW-EB4 prolipoprotein diacylglyceryl transferase YP_001673257.1 1257405 D 458817 CDS YP_001673258.1 167622964 5906335 complement(1259506..1259916) 1 NC_010334.1 PFAM: cytochrome c class I; KEGG: sbl:Sbal_0009 monoheme cytochrome c; cytochrome c class I 1259916 5906335 Shal_1030 Shewanella halifaxensis HAW-EB4 cytochrome c class I YP_001673258.1 1259506 R 458817 CDS YP_001673259.1 167622965 5905914 complement(1259918..1260307) 1 NC_010334.1 KEGG: son:SO_0716 monoheme cytochrome c, putative; hypothetical protein 1260307 5905914 Shal_1031 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673259.1 1259918 R 458817 CDS YP_001673260.1 167622966 5905915 complement(1260307..1261533) 1 NC_010334.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: sbl:Sbal_0007 oxidoreductase, molybdopterin binding; molybdopterin-binding oxidoreductase 1261533 5905915 Shal_1032 Shewanella halifaxensis HAW-EB4 molybdopterin-binding oxidoreductase YP_001673260.1 1260307 R 458817 CDS YP_001673261.1 167622967 5906779 complement(1261533..1261853) 1 NC_010334.1 PFAM: cytochrome c class I; KEGG: sbl:Sbal_0006 monoheme cytochrome c; cytochrome c class I 1261853 5906779 Shal_1033 Shewanella halifaxensis HAW-EB4 cytochrome c class I YP_001673261.1 1261533 R 458817 CDS YP_001673262.1 167622968 5906780 complement(1262624..1264345) 1 NC_010334.1 PFAM: Chloride channel core; KEGG: son:SO_1302 chloride channel; chloride channel core 1264345 5906780 Shal_1034 Shewanella halifaxensis HAW-EB4 chloride channel core YP_001673262.1 1262624 R 458817 CDS YP_001673263.1 167622969 5906978 1264407..1265210 1 NC_010334.1 KEGG: slo:Shew_1016 hypothetical protein; hypothetical protein 1265210 5906978 Shal_1035 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673263.1 1264407 D 458817 CDS YP_001673264.1 167622970 5906979 1265203..1265553 1 NC_010334.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 1265553 5906979 Shal_1036 Shewanella halifaxensis HAW-EB4 iron-sulfur cluster insertion protein ErpA YP_001673264.1 1265203 D 458817 CDS YP_001673265.1 167622971 5906862 complement(1265636..1266154) 1 NC_010334.1 KEGG: she:Shewmr4_2888 hypothetical protein; hypothetical protein 1266154 5906862 Shal_1037 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673265.1 1265636 R 458817 CDS YP_001673266.1 167622972 5904451 complement(1266244..1266585) 1 NC_010334.1 KEGG: shw:Sputw3181_3039 hypothetical protein; hypothetical protein 1266585 5904451 Shal_1038 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673266.1 1266244 R 458817 CDS YP_001673267.1 167622973 5904452 complement(1266841..1268253) 1 NC_010334.1 PFAM: Alkaline phosphatase; KEGG: vpa:VPA1073 putative alkaline phosphatase; alkaline phosphatase 1268253 5904452 Shal_1039 Shewanella halifaxensis HAW-EB4 alkaline phosphatase YP_001673267.1 1266841 R 458817 CDS YP_001673268.1 167622974 5904374 complement(1268336..1270855) 1 NC_010334.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: shn:Shewana3_3062 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 1270855 5904374 Shal_1040 Shewanella halifaxensis HAW-EB4 peptidase S9 prolyl oligopeptidase YP_001673268.1 1268336 R 458817 CDS YP_001673269.1 167622975 5904375 complement(1270951..1273716) 1 NC_010334.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: vvy:VV0250 outer membrane receptor protein; TonB-dependent receptor 1273716 5904375 Shal_1041 Shewanella halifaxensis HAW-EB4 TonB-dependent receptor YP_001673269.1 1270951 R 458817 CDS YP_001673270.1 167622976 5905057 1274069..1276219 1 NC_010334.1 PFAM: transcriptional regulator domain protein; WD40 domain protein beta Propeller; KEGG: shm:Shewmr7_2965 transcriptional regulator domain protein; winged helix family two component response transcriptional regulator 1276219 5905057 Shal_1042 Shewanella halifaxensis HAW-EB4 winged helix family two component response transcriptional regulator YP_001673270.1 1274069 D 458817 CDS YP_001673271.1 167622977 5905058 complement(1276337..1277446) 1 NC_010334.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1277446 anmK 5905058 anmK Shewanella halifaxensis HAW-EB4 anhydro-N-acetylmuramic acid kinase YP_001673271.1 1276337 R 458817 CDS YP_001673272.1 167622978 5904513 complement(1277518..1278942) 1 NC_010334.1 PFAM: peptidase M23B; Opacity-associated protein A domain protein; KEGG: slo:Shew_1021 peptidase M23B; peptidase M23B 1278942 5904513 Shal_1044 Shewanella halifaxensis HAW-EB4 peptidase M23B YP_001673272.1 1277518 R 458817 CDS YP_001673273.1 167622979 5904514 1279071..1280267 1 NC_010334.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1280267 5904514 Shal_1045 Shewanella halifaxensis HAW-EB4 tyrosyl-tRNA synthetase YP_001673273.1 1279071 D 458817 CDS YP_001673274.1 167622980 5906810 complement(1280329..1280739) 1 NC_010334.1 KEGG: shw:Sputw3181_3035 hypothetical protein; hypothetical protein 1280739 5906810 Shal_1046 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673274.1 1280329 R 458817 CDS YP_001673275.1 167622981 5904623 complement(1280888..1281367) 1 NC_010334.1 KEGG: slo:Shew_1023 hypothetical protein; hypothetical protein 1281367 5904623 Shal_1047 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673275.1 1280888 R 458817 CDS YP_001673276.1 167622982 5904624 complement(1281367..1281990) 1 NC_010334.1 PFAM: protein of unknown function UPF0126; KEGG: slo:Shew_1024 protein of unknown function UPF0126; hypothetical protein 1281990 5904624 Shal_1048 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673276.1 1281367 R 458817 CDS YP_001673277.1 167622983 5906821 complement(1281987..1282376) 1 NC_010334.1 KEGG: slo:Shew_1025 hypothetical protein; hypothetical protein 1282376 5906821 Shal_1049 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673277.1 1281987 R 458817 CDS YP_001673278.1 167622984 5906822 complement(1282510..1283490) 1 NC_010334.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: slo:Shew_1026 cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein CbiB 1283490 5906822 Shal_1050 Shewanella halifaxensis HAW-EB4 cobalamin biosynthesis protein CbiB YP_001673278.1 1282510 R 458817 CDS YP_001673279.1 167622985 5905752 complement(1283577..1284269) 1 NC_010334.1 PFAM: purine or other phosphorylase family 1; KEGG: shn:Shewana3_3052 purine and other phosphorylases, family 1; adenosylhomocysteine nucleosidase 1284269 5905752 Shal_1051 Shewanella halifaxensis HAW-EB4 adenosylhomocysteine nucleosidase YP_001673279.1 1283577 R 458817 CDS YP_001673280.1 167622986 5905753 1284758..1286053 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE3 domain protein; KEGG: pin:Ping_3077 diguanylate cyclase; diguanylate cyclase 1286053 5905753 Shal_1052 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001673280.1 1284758 D 458817 CDS YP_001673281.1 167622987 5906621 1286247..1286702 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_0291 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1286702 5906621 Shal_1053 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001673281.1 1286247 D 458817 CDS YP_001673282.1 167622988 5906591 complement(1286827..1287309) 1 NC_010334.1 PFAM: regulatory protein MarR; KEGG: sfr:Sfri_1943 transcriptional regulator, MarR family protein; MarR family transcriptional regulator 1287309 5906591 Shal_1054 Shewanella halifaxensis HAW-EB4 MarR family transcriptional regulator YP_001673282.1 1286827 R 458817 CDS YP_001673283.1 167622989 5906592 complement(1287477..1288181) 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: sfr:Sfri_1944 hypothetical protein; hypothetical protein 1288181 5906592 Shal_1055 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673283.1 1287477 R 458817 CDS YP_001673284.1 167622990 5906727 complement(1288200..1289417) 1 NC_010334.1 KEGG: sfr:Sfri_1945 putative transporter, BCCT family protein; putative BCCT family protein transporter 1289417 5906727 Shal_1056 Shewanella halifaxensis HAW-EB4 putative BCCT family protein transporter YP_001673284.1 1288200 R 458817 CDS YP_001673285.1 167622991 5906728 complement(1289763..1291460) 1 NC_010334.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 1291460 5906728 Shal_1057 Shewanella halifaxensis HAW-EB4 choline dehydrogenase YP_001673285.1 1289763 R 458817 CDS YP_001673286.1 167622992 5906323 complement(1291470..1292933) 1 NC_010334.1 catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 1292933 5906323 Shal_1058 Shewanella halifaxensis HAW-EB4 betaine aldehyde dehydrogenase YP_001673286.1 1291470 R 458817 CDS YP_001673287.1 167622993 5906324 complement(1292924..1293529) 1 NC_010334.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 1293529 5906324 Shal_1059 Shewanella halifaxensis HAW-EB4 transcriptional regulator BetI YP_001673287.1 1292924 R 458817 CDS YP_001673288.1 167622994 5903273 complement(1294179..1295588) 1 NC_010334.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 1295588 gltD 5903273 gltD Shewanella halifaxensis HAW-EB4 glutamate synthase subunit beta YP_001673288.1 1294179 R 458817 CDS YP_001673289.1 167622995 5903274 complement(1295595..1300043) 1 NC_010334.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 1300043 gltB 5903274 gltB Shewanella halifaxensis HAW-EB4 glutamate synthase subunit alpha YP_001673289.1 1295595 R 458817 CDS YP_001673290.1 167622996 5903779 1300543..1301484 1 NC_010334.1 KEGG: shn:Shewana3_3048 conserved hypothetical radical SAM protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; putative radical SAM protein 1301484 5903779 Shal_1062 Shewanella halifaxensis HAW-EB4 putative radical SAM protein YP_001673290.1 1300543 D 458817 CDS YP_001673291.1 167622997 5903155 1301674..1302039 1 NC_010334.1 PFAM: Hpt domain protein; KEGG: son:SO_1327 sensor histidine kinase-related protein; Hpt protein 1302039 5903155 Shal_1063 Shewanella halifaxensis HAW-EB4 Hpt protein YP_001673291.1 1301674 D 458817 CDS YP_001673292.1 167622998 5903156 1302217..1303149 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_3025 transcriptional regulator, LysR family; LysR family transcriptional regulator 1303149 5903156 Shal_1064 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001673292.1 1302217 D 458817 CDS YP_001673293.1 167622999 5903069 complement(1303211..1304284) 1 NC_010334.1 KEGG: saz:Sama_0861 adenylate cyclase-related protein; putative adenylate/guanylate cyclase 1304284 5903069 Shal_1065 Shewanella halifaxensis HAW-EB4 putative adenylate/guanylate cyclase YP_001673293.1 1303211 R 458817 CDS YP_001673294.1 167623000 5903070 complement(1304409..1305080) 1 NC_010334.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 1305080 5903070 Shal_1066 Shewanella halifaxensis HAW-EB4 DNA mismatch repair protein YP_001673294.1 1304409 R 458817 CDS YP_001673295.1 167623001 5904772 1305773..1306294 1 NC_010334.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1306294 5904772 Shal_1067 Shewanella halifaxensis HAW-EB4 dinucleoside polyphosphate hydrolase YP_001673295.1 1305773 D 458817 CDS YP_001673296.1 167623002 5904773 1306314..1308548 1 NC_010334.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: shm:Shewmr7_2946 PTSINtr with GAF domain, PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP 1308548 5904773 Shal_1068 Shewanella halifaxensis HAW-EB4 phosphoenolpyruvate-protein phosphotransferase PtsP YP_001673296.1 1306314 D 458817 CDS YP_001673297.1 167623003 5903313 1308623..1309423 1 NC_010334.1 PFAM: protein of unknown function DUF81; KEGG: shm:Shewmr7_2945 protein of unknown function DUF81; hypothetical protein 1309423 5903313 Shal_1069 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673297.1 1308623 D 458817 CDS YP_001673298.1 167623004 5903314 1309508..1310359 1 NC_010334.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1310359 thyA 5903314 thyA Shewanella halifaxensis HAW-EB4 thymidylate synthase YP_001673298.1 1309508 D 458817 CDS YP_001673299.1 167623005 5904469 1311115..1312290 1 NC_010334.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1312290 nhaA 5904469 nhaA Shewanella halifaxensis HAW-EB4 pH-dependent sodium/proton antiporter YP_001673299.1 1311115 D 458817 CDS YP_001673300.1 167623006 5904463 1312287..1312670 1 NC_010334.1 KEGG: slo:Shew_1043 hypothetical protein; hypothetical protein 1312670 5904463 Shal_1072 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673300.1 1312287 D 458817 CDS YP_001673301.1 167623007 5904464 1312740..1313648 1 NC_010334.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 1313648 nhaR 5904464 nhaR Shewanella halifaxensis HAW-EB4 transcriptional activator NhaR YP_001673301.1 1312740 D 458817 CDS YP_001673302.1 167623008 5904321 1313815..1314054 1 NC_010334.1 PFAM: protein of unknown function DUF339; KEGG: slo:Shew_1045 protein of unknown function DUF339; hypothetical protein 1314054 5904321 Shal_1074 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673302.1 1313815 D 458817 CDS YP_001673303.1 167623009 5904322 1314035..1314451 1 NC_010334.1 KEGG: sbm:Shew185_1237 hypothetical protein; hypothetical protein 1314451 5904322 Shal_1075 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673303.1 1314035 D 458817 CDS YP_001673304.1 167623010 5903434 complement(1314482..1316092) 1 NC_010334.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 1316092 5903434 Shal_1076 Shewanella halifaxensis HAW-EB4 L-aspartate oxidase YP_001673304.1 1314482 R 458817 CDS YP_001673305.1 167623011 5903435 1316312..1316890 1 NC_010334.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1316890 5903435 Shal_1077 Shewanella halifaxensis HAW-EB4 RNA polymerase sigma factor RpoE YP_001673305.1 1316312 D 458817 CDS YP_001673306.1 167623012 5902676 1316916..1317521 1 NC_010334.1 PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: slo:Shew_1049 anti sigma-E protein, RseA; anti sigma-E protein RseA 1317521 5902676 Shal_1078 Shewanella halifaxensis HAW-EB4 anti sigma-E protein RseA YP_001673306.1 1316916 D 458817 CDS YP_001673307.1 167623013 5902677 1317534..1318466 1 NC_010334.1 PFAM: MucB/RseB family protein; KEGG: she:Shewmr4_2852 sigma E regulatory protein, MucB/RseB; sigma E regulatory protein MucB/RseB 1318466 5902677 Shal_1079 Shewanella halifaxensis HAW-EB4 sigma E regulatory protein MucB/RseB YP_001673307.1 1317534 D 458817 CDS YP_001673308.1 167623014 5903266 1318480..1318944 1 NC_010334.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: son:SO_1345 sigma-E factor regulatory protein RseC; sigma E positive regulator RseC/MucC 1318944 5903266 Shal_1080 Shewanella halifaxensis HAW-EB4 sigma E positive regulator RseC/MucC YP_001673308.1 1318480 D 458817 CDS YP_001673309.1 167623015 5903267 1319074..1320864 1 NC_010334.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1320864 5903267 Shal_1081 Shewanella halifaxensis HAW-EB4 GTP-binding protein LepA YP_001673309.1 1319074 D 458817 CDS YP_001673310.1 167623016 5903241 1321004..1321921 1 NC_010334.1 KEGG: slo:Shew_1053 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 1321921 5903241 Shal_1082 Shewanella halifaxensis HAW-EB4 signal peptidase I YP_001673310.1 1321004 D 458817 CDS YP_001673311.1 167623017 5903534 1321923..1322600 1 NC_010334.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1322600 rnc 5903534 rnc Shewanella halifaxensis HAW-EB4 ribonuclease III YP_001673311.1 1321923 D 458817 CDS YP_001673312.1 167623018 5903535 1322597..1323589 1 NC_010334.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1323589 era 5903535 era Shewanella halifaxensis HAW-EB4 GTP-binding protein Era YP_001673312.1 1322597 D 458817 CDS YP_001673313.1 167623019 5904607 1323718..1324473 1 NC_010334.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: slo:Shew_1056 DNA repair protein RecO; DNA repair protein RecO 1324473 5904607 Shal_1085 Shewanella halifaxensis HAW-EB4 DNA repair protein RecO YP_001673313.1 1323718 D 458817 CDS YP_001673314.1 167623020 5904608 1324591..1325328 1 NC_010334.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1325328 5904608 Shal_1086 Shewanella halifaxensis HAW-EB4 pyridoxine 5'-phosphate synthase YP_001673314.1 1324591 D 458817 CDS YP_001673315.1 167623021 5904907 1325516..1325911 1 NC_010334.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1325911 acpS 5904907 acpS Shewanella halifaxensis HAW-EB4 4'-phosphopantetheinyl transferase YP_001673315.1 1325516 D 458817 CDS YP_001673316.1 167623022 5904908 complement(1325921..1326382) 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bsu:BG10906 spermine/spermidine acetyltransferase; N-acetyltransferase GCN5 1326382 5904908 Shal_1088 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001673316.1 1325921 R 458817 CDS YP_001673317.1 167623023 5904909 complement(1326545..1327486) 1 NC_010334.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: zmo:ZMO1573 predicted iron-dependent peroxidase; Dyp-type peroxidase family protein 1327486 5904909 Shal_1089 Shewanella halifaxensis HAW-EB4 Dyp-type peroxidase family protein YP_001673317.1 1326545 R 458817 CDS YP_001673318.1 167623024 5904910 1327826..1328872 1 NC_010334.1 KEGG: slo:Shew_2460 hypothetical protein; hypothetical protein 1328872 5904910 Shal_1090 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673318.1 1327826 D 458817 CDS YP_001673319.1 167623025 5904932 1329338..1330804 1 NC_010334.1 KEGG: mgm:Mmc1_0550 hypothetical protein; hypothetical protein 1330804 5904932 Shal_1091 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673319.1 1329338 D 458817 CDS YP_001673320.1 167623026 5904988 1330861..1331427 1 NC_010334.1 PFAM: NapC/NirT cytochrome c domain protein; KEGG: vpa:VP1222 putative cytochrome c-type protein; NapC/NirT cytochrome c domain-containing protein 1331427 5904988 Shal_1092 Shewanella halifaxensis HAW-EB4 NapC/NirT cytochrome c domain-containing protein YP_001673320.1 1330861 D 458817 CDS YP_001673321.1 167623027 5904989 1331659..1332201 1 NC_010334.1 PFAM: protein of unknown function DUF962; KEGG: slo:Shew_1059 protein of unknown function DUF962; hypothetical protein 1332201 5904989 Shal_1093 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673321.1 1331659 D 458817 CDS YP_001673322.1 167623028 5905053 complement(1332293..1333573) 1 NC_010334.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: slo:Shew_1060 protein of unknown function DUF21; hypothetical protein 1333573 5905053 Shal_1094 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673322.1 1332293 R 458817 CDS YP_001673323.1 167623029 5905054 complement(1333722..1334510) 1 NC_010334.1 PFAM: cytochrome c assembly protein; KEGG: sbm:Shew185_1252 cytochrome c assembly protein; cytochrome c assembly protein 1334510 5905054 Shal_1095 Shewanella halifaxensis HAW-EB4 cytochrome c assembly protein YP_001673323.1 1333722 R 458817 CDS YP_001673324.1 167623030 5905045 1334904..1336277 1 NC_010334.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 1336277 5905045 Shal_1096 Shewanella halifaxensis HAW-EB4 signal recognition particle protein YP_001673324.1 1334904 D 458817 CDS YP_001673325.1 167623031 5905046 1336495..1336746 1 NC_010334.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1336746 rpsP 5905046 rpsP Shewanella halifaxensis HAW-EB4 30S ribosomal protein S16 YP_001673325.1 1336495 D 458817 CDS YP_001673326.1 167623032 5905178 1336767..1337297 1 NC_010334.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1337297 rimM 5905178 rimM Shewanella halifaxensis HAW-EB4 16S rRNA-processing protein RimM YP_001673326.1 1336767 D 458817 CDS YP_001673327.1 167623033 5905179 1337313..1338059 1 NC_010334.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1338059 trmD 5905179 trmD Shewanella halifaxensis HAW-EB4 tRNA (guanine-N(1)-)-methyltransferase YP_001673327.1 1337313 D 458817 CDS YP_001673328.1 167623034 5905189 1338096..1338449 1 NC_010334.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1338449 rplS 5905189 rplS Shewanella halifaxensis HAW-EB4 50S ribosomal protein L19 YP_001673328.1 1338096 D 458817 CDS YP_001673329.1 167623035 5905190 1338809..1339900 1 NC_010334.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1339900 5905190 Shal_1101 Shewanella halifaxensis HAW-EB4 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001673329.1 1338809 D 458817 CDS YP_001673330.1 167623036 5905208 1339900..1341054 1 NC_010334.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 1341054 tyrA 5905208 tyrA Shewanella halifaxensis HAW-EB4 bifunctional chorismate mutase/prephenate dehydrogenase YP_001673330.1 1339900 D 458817 CDS YP_001673331.1 167623037 5905230 1341333..1343027 1 NC_010334.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1343027 5905230 Shal_1103 Shewanella halifaxensis HAW-EB4 hydroxylamine reductase YP_001673331.1 1341333 D 458817 CDS YP_001673332.1 167623038 5905231 1343122..1344213 1 NC_010334.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: slo:Shew_1070 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 1344213 5905231 Shal_1104 Shewanella halifaxensis HAW-EB4 oxidoreductase FAD-binding subunit YP_001673332.1 1343122 D 458817 CDS YP_001673333.1 167623039 5905278 1344351..1344689 1 NC_010334.1 KEGG: son:SO_1365 hypothetical protein; hypothetical protein 1344689 5905278 Shal_1105 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673333.1 1344351 D 458817 CDS YP_001673334.1 167623040 5905279 1344731..1346017 1 NC_010334.1 PFAM: sodium/hydrogen exchanger; KEGG: sbm:Shew185_1263 sodium/hydrogen exchanger; sodium/hydrogen exchanger 1346017 5905279 Shal_1106 Shewanella halifaxensis HAW-EB4 sodium/hydrogen exchanger YP_001673334.1 1344731 D 458817 CDS YP_001673335.1 167623041 5905287 complement(1346059..1348038) 1 NC_010334.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: sbm:Shew185_1264 chorismate mutase; chorismate mutase 1348038 5905287 Shal_1107 Shewanella halifaxensis HAW-EB4 chorismate mutase YP_001673335.1 1346059 R 458817 CDS YP_001673336.1 167623042 5905288 complement(1348358..1348720) 1 NC_010334.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shn:Shewana3_1133 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30EA 1348720 5905288 Shal_1108 Shewanella halifaxensis HAW-EB4 sigma 54 modulation protein/30S ribosomal protein S30EA YP_001673336.1 1348358 R 458817 CDS YP_001673337.1 167623043 5905213 1349030..1349722 1 NC_010334.1 PFAM: cytochrome B561; KEGG: sbl:Sbal_1222 cytochrome b561; cytochrome B561 1349722 5905213 Shal_1109 Shewanella halifaxensis HAW-EB4 cytochrome B561 YP_001673337.1 1349030 D 458817 CDS YP_001673338.1 167623044 5905214 complement(1349787..1350248) 1 NC_010334.1 PFAM: cytochrome c class II; KEGG: slo:Shew_1075 cytochrome c, class II; cytochrome c class II 1350248 5905214 Shal_1110 Shewanella halifaxensis HAW-EB4 cytochrome c class II YP_001673338.1 1349787 R 458817 CDS YP_001673339.1 167623045 5904258 1350475..1350750 1 NC_010334.1 TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: son:SO_3419 trp operon repressor; Trp operon repressor 1350750 5904258 Shal_1111 Shewanella halifaxensis HAW-EB4 Trp operon repressor YP_001673339.1 1350475 D 458817 CDS YP_001673340.1 167623046 5905557 complement(1350804..1351205) 1 NC_010334.1 KEGG: shn:Shewana3_1137 hypothetical protein; hypothetical protein 1351205 5905557 Shal_1112 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673340.1 1350804 R 458817 CDS YP_001673341.1 167623047 5905558 complement(1351338..1351958) 1 NC_010334.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_1078 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1351958 5905558 Shal_1113 Shewanella halifaxensis HAW-EB4 FKBP-type peptidylprolyl isomerase YP_001673341.1 1351338 R 458817 CDS YP_001673342.1 167623048 5905512 1352672..1355137 1 NC_010334.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1355137 thrA 5905512 thrA Shewanella halifaxensis HAW-EB4 bifunctional aspartokinase I/homoserine dehydrogenase I YP_001673342.1 1352672 D 458817 CDS YP_001673343.1 167623049 5905513 1355134..1356069 1 NC_010334.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1356069 5905513 Shal_1115 Shewanella halifaxensis HAW-EB4 homoserine kinase YP_001673343.1 1355134 D 458817 CDS YP_001673344.1 167623050 5905617 1356114..1357400 1 NC_010334.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1357400 5905617 Shal_1116 Shewanella halifaxensis HAW-EB4 threonine synthase YP_001673344.1 1356114 D 458817 CDS YP_001673345.1 167623051 5905618 1357669..1357959 1 NC_010334.1 KEGG: sbm:Shew185_1274 hypothetical protein; hypothetical protein 1357959 5905618 Shal_1117 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673345.1 1357669 D 458817 CDS YP_001673346.1 167623052 5905589 complement(1357977..1358831) 1 NC_010334.1 KEGG: slo:Shew_1083 apurinic endonuclease Apn1; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; apurinic endonuclease Apn1 1358831 5905589 Shal_1118 Shewanella halifaxensis HAW-EB4 apurinic endonuclease Apn1 YP_001673346.1 1357977 R 458817 CDS YP_001673347.1 167623053 5905590 1359061..1359612 1 NC_010334.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sfr:Sfri_2903 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation-binding domain-containing protein 1359612 5905590 Shal_1119 Shewanella halifaxensis HAW-EB4 hemerythrin HHE cation-binding domain-containing protein YP_001673347.1 1359061 D 458817 CDS YP_001673348.1 167623054 5905719 complement(1359691..1359876) 1 NC_010334.1 KEGG: son:SO_3548 hypothetical protein; hypothetical protein 1359876 5905719 Shal_1120 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673348.1 1359691 R 458817 CDS YP_001673349.1 167623055 5905720 complement(1360100..1361737) 1 NC_010334.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1361737 pgi 5905720 pgi Shewanella halifaxensis HAW-EB4 glucose-6-phosphate isomerase YP_001673349.1 1360100 R 458817 CDS YP_001673350.1 167623056 5903197 complement(1361754..1362710) 1 NC_010334.1 KEGG: slo:Shew_1089 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 1362710 5903197 Shal_1122 Shewanella halifaxensis HAW-EB4 transaldolase B YP_001673350.1 1361754 R 458817 CDS YP_001673351.1 167623057 5905805 complement(1362993..1364090) 1 NC_010334.1 PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: slo:Shew_1090 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1364090 5905805 Shal_1123 Shewanella halifaxensis HAW-EB4 OmpA/MotB domain-containing protein YP_001673351.1 1362993 R 458817 CDS YP_001673352.1 167623058 5905806 complement(1364332..1366698) 1 NC_010334.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: slo:Shew_1091 phosphoketolase; putative phosphoketolase 1366698 5905806 Shal_1124 Shewanella halifaxensis HAW-EB4 putative phosphoketolase YP_001673352.1 1364332 R 458817 CDS YP_001673353.1 167623059 5905750 1367121..1368602 1 NC_010334.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO_3541 sodium:alanine symporter family protein; amino acid carrier protein 1368602 5905750 Shal_1125 Shewanella halifaxensis HAW-EB4 amino acid carrier protein YP_001673353.1 1367121 D 458817 CDS YP_001673354.1 167623060 5905751 1368711..1369484 1 NC_010334.1 PFAM: protein of unknown function DUF328; KEGG: slo:Shew_1093 protein of unknown function DUF328; hypothetical protein 1369484 5905751 Shal_1126 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673354.1 1368711 D 458817 CDS YP_001673355.1 167623061 5905714 1370298..1370612 1 NC_010334.1 PFAM: regulatory protein ArsR; KEGG: saz:Sama_0920 transcriptional regulator HlyU; ArsR family transcriptional regulator 1370612 5905714 Shal_1127 Shewanella halifaxensis HAW-EB4 ArsR family transcriptional regulator YP_001673355.1 1370298 D 458817 CDS YP_001673356.1 167623062 5905715 complement(1370832..1371098) 1 NC_010334.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1371098 rpsT 5905715 rpsT Shewanella halifaxensis HAW-EB4 30S ribosomal protein S20 YP_001673356.1 1370832 R 458817 CDS YP_001673357.1 167623063 5905886 1371355..1372914 1 NC_010334.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: slo:Shew_1097 integral membrane protein MviN; integral membrane protein MviN 1372914 5905886 Shal_1129 Shewanella halifaxensis HAW-EB4 integral membrane protein MviN YP_001673357.1 1371355 D 458817 CDS YP_001673358.1 167623064 5905887 1372980..1373915 1 NC_010334.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: slo:Shew_1098 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF 1373915 5905887 Shal_1130 Shewanella halifaxensis HAW-EB4 riboflavin biosynthesis protein RibF YP_001673358.1 1372980 D 458817 CDS YP_001673359.1 167623065 5905952 1373947..1376769 1 NC_010334.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1376769 ileS 5905952 ileS Shewanella halifaxensis HAW-EB4 isoleucyl-tRNA synthetase YP_001673359.1 1373947 D 458817 CDS YP_001673360.1 167623066 5905897 1376891..1377403 1 NC_010334.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1377403 lspA 5905897 lspA Shewanella halifaxensis HAW-EB4 lipoprotein signal peptidase YP_001673360.1 1376891 D 458817 CDS YP_001673361.1 167623067 5905898 1377409..1377831 1 NC_010334.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_1101 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1377831 5905898 Shal_1133 Shewanella halifaxensis HAW-EB4 FKBP-type peptidylprolyl isomerase YP_001673361.1 1377409 D 458817 CDS YP_001673362.1 167623068 5906563 1377834..1378763 1 NC_010334.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1378763 ispH 5906563 ispH Shewanella halifaxensis HAW-EB4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_001673362.1 1377834 D 458817 CDS YP_001673363.1 167623069 5906564 1379009..1379530 1 NC_010334.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: slo:Shew_1103 type IV pilus modification protein PilV; type IV pilus modification protein PilV 1379530 5906564 Shal_1135 Shewanella halifaxensis HAW-EB4 type IV pilus modification protein PilV YP_001673363.1 1379009 D 458817 CDS YP_001673364.1 167623070 5905958 1379531..1380511 1 NC_010334.1 KEGG: slo:Shew_1104 prepilin-type cleavage/methylation-like protein; prepilin-type cleavage/methylation-like protein 1380511 5905958 Shal_1136 Shewanella halifaxensis HAW-EB4 prepilin-type cleavage/methylation-like protein YP_001673364.1 1379531 D 458817 CDS YP_001673365.1 167623071 5905959 1380524..1380958 1 NC_010334.1 KEGG: slo:Shew_1105 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX 1380958 5905959 Shal_1137 Shewanella halifaxensis HAW-EB4 type IV pilus assembly protein PilX YP_001673365.1 1380524 D 458817 CDS YP_001673366.1 167623072 5906813 1380963..1384559 1 NC_010334.1 KEGG: slo:Shew_1106 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein 1384559 5906813 Shal_1138 Shewanella halifaxensis HAW-EB4 type IV pilin biogenesis protein YP_001673366.1 1380963 D 458817 CDS YP_001673367.1 167623073 5906814 1384562..1384951 1 NC_010334.1 KEGG: shw:Sputw3181_3098 methylation site containing protein; methylation site containing protein 1384951 5906814 Shal_1139 Shewanella halifaxensis HAW-EB4 methylation site containing protein YP_001673367.1 1384562 D 458817 CDS YP_001673368.1 167623074 5905474 1384951..1385259 1 NC_010334.1 KEGG: shm:Shewmr7_3030 hypothetical protein; hypothetical protein 1385259 5905474 Shal_1140 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673368.1 1384951 D 458817 CDS YP_001673369.1 167623075 5905475 complement(1385386..1385877) 1 NC_010334.1 KEGG: slo:Shew_1108 methylation site containing protein; methylation site containing protein 1385877 5905475 Shal_1141 Shewanella halifaxensis HAW-EB4 methylation site containing protein YP_001673369.1 1385386 R 458817 CDS YP_001673370.1 167623076 5906980 complement(1386018..1386533) 1 NC_010334.1 TIGRFAM: general secretion pathway protein H; KEGG: slo:Shew_1109 type IV pilus biogenesis protein, putative; general secretion pathway protein H 1386533 5906980 Shal_1142 Shewanella halifaxensis HAW-EB4 general secretion pathway protein H YP_001673370.1 1386018 R 458817 CDS YP_001673371.1 167623077 5906804 1386779..1387117 1 NC_010334.1 PFAM: nitrogen regulatory protein P-II; KEGG: saz:Sama_0935 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1387117 5906804 Shal_1143 Shewanella halifaxensis HAW-EB4 nitrogen regulatory protein P-II YP_001673371.1 1386779 D 458817 CDS YP_001673372.1 167623078 5906805 complement(1387184..1388200) 1 NC_010334.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: saz:Sama_0937 transcriptional regulator, LacI family; LacI family transcriptional regulator 1388200 5906805 Shal_1144 Shewanella halifaxensis HAW-EB4 LacI family transcriptional regulator YP_001673372.1 1387184 R 458817 CDS YP_001673373.1 167623079 5906634 1388622..1391249 1 NC_010334.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_1112 TonB-dependent receptor; TonB-dependent receptor plug 1391249 5906634 Shal_1145 Shewanella halifaxensis HAW-EB4 TonB-dependent receptor plug YP_001673373.1 1388622 D 458817 CDS YP_001673374.1 167623080 5906635 1391406..1392932 1 NC_010334.1 PFAM: tryptophan halogenase; KEGG: slo:Shew_1113 tryptophan halogenase; tryptophan halogenase 1392932 5906635 Shal_1146 Shewanella halifaxensis HAW-EB4 tryptophan halogenase YP_001673374.1 1391406 D 458817 CDS YP_001673375.1 167623081 5906619 complement(1392991..1393719) 1 NC_010334.1 PFAM: SapC family protein; KEGG: slo:Shew_1114 SapC family protein; SapC family protein 1393719 5906619 Shal_1147 Shewanella halifaxensis HAW-EB4 SapC family protein YP_001673375.1 1392991 R 458817 CDS YP_001673376.1 167623082 5906620 1394433..1397138 1 NC_010334.1 PFAM: Carbohydrate-binding chitobiase/hexosaminidase-type domain protein; glycoside hydrolase family 20 domain protein; Glycoside hydrolase, family 20, catalytic core; KEGG: spc:Sputcn32_1075 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase 1397138 5906620 Shal_1148 Shewanella halifaxensis HAW-EB4 beta-N-acetylhexosaminidase YP_001673376.1 1394433 D 458817 CDS YP_001673377.1 167623083 5906597 1397379..1398275 1 NC_010334.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: she:Shewmr4_2935 ATPase, BadF/BadG/BcrA/BcrD type; BadF/BadG/BcrA/BcrD type ATPase 1398275 5906597 Shal_1149 Shewanella halifaxensis HAW-EB4 BadF/BadG/BcrA/BcrD type ATPase YP_001673377.1 1397379 D 458817 CDS YP_001673378.1 167623084 5906598 1398351..1399484 1 NC_010334.1 KEGG: shw:Sputw3181_3087 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 1399484 5906598 Shal_1150 Shewanella halifaxensis HAW-EB4 N-acetylglucosamine-6-phosphate deacetylase YP_001673378.1 1398351 D 458817 CDS YP_001673379.1 167623085 5906468 1399603..1400799 1 NC_010334.1 KEGG: shm:Shewmr7_3014 hypothetical protein; hypothetical protein 1400799 5906468 Shal_1151 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673379.1 1399603 D 458817 CDS YP_001673380.1 167623086 5906461 1401086..1402399 1 NC_010334.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: saz:Sama_0948 multiple antibiotic resistance (MarC)-related protein; glucose/galactose transporter 1402399 5906461 Shal_1152 Shewanella halifaxensis HAW-EB4 glucose/galactose transporter YP_001673380.1 1401086 D 458817 CDS YP_001673381.1 167623087 5906051 complement(1404901..1405179) 1 NC_010334.1 PFAM: Fe(II) trafficking protein YggX; KEGG: slo:Shew_1122 Fe(II) trafficking protein YggX; hypothetical protein 1405179 5906051 Shal_1153 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673381.1 1404901 R 458817 CDS YP_001673382.1 167623088 5905946 complement(1405182..1406246) 1 NC_010334.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; KEGG: shw:Sputw3181_1311 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase 1406246 5905946 Shal_1154 Shewanella halifaxensis HAW-EB4 A/G-specific adenine glycosylase YP_001673382.1 1405182 R 458817 CDS YP_001673383.1 167623089 5905707 1406497..1407210 1 NC_010334.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1407210 trmB 5905707 trmB Shewanella halifaxensis HAW-EB4 tRNA (guanine-N(7)-)-methyltransferase YP_001673383.1 1406497 D 458817 CDS YP_001673384.1 167623090 5905708 1407261..1407587 1 NC_010334.1 PFAM: protein of unknown function DUF469; KEGG: sdn:Sden_2696 protein of unknown function DUF469; hypothetical protein 1407587 5905708 Shal_1156 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673384.1 1407261 D 458817 CDS YP_001673385.1 167623091 5904294 1407587..1408501 1 NC_010334.1 catalyzes the formation of glutamate from glutamine; glutaminase 1408501 5904294 Shal_1157 Shewanella halifaxensis HAW-EB4 glutaminase YP_001673385.1 1407587 D 458817 CDS YP_001673386.1 167623092 5904295 1408746..1409561 1 NC_010334.1 KEGG: sbm:Shew185_3049 hypothetical protein; hypothetical protein 1409561 5904295 Shal_1158 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673386.1 1408746 D 458817 CDS YP_001673387.1 167623093 5907011 1409893..1410834 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_1128 transcriptional regulator, LysR family; LysR family transcriptional regulator 1410834 5907011 Shal_1159 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001673387.1 1409893 D 458817 CDS YP_001673388.1 167623094 5907008 1411596..1413536 1 NC_010334.1 hypothetical protein 1413536 5907008 Shal_1160 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673388.1 1411596 D 458817 CDS YP_001673389.1 167623095 5907009 complement(1413613..1414731) 1 NC_010334.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: cps:CPS_3436 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 1414731 5907009 Shal_1161 Shewanella halifaxensis HAW-EB4 C4-dicarboxylate transporter/malic acid transport protein YP_001673389.1 1413613 R 458817 CDS YP_001673390.1 167623096 5907006 1415185..1415442 1 NC_010334.1 hypothetical protein 1415442 5907006 Shal_1162 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673390.1 1415185 D 458817 CDS YP_001673391.1 167623097 5907007 1415621..1416505 1 NC_010334.1 PFAM: regulatory protein LysR; KEGG: vpa:VPA0251 transcriptional regulator, LysR family; LysR family transcriptional regulator 1416505 5907007 Shal_1163 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001673391.1 1415621 D 458817 CDS YP_001673392.1 167623098 5906981 complement(1416563..1418149) 1 NC_010334.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: lpn:lpg1202 cytochrome D ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 1418149 5906981 Shal_1164 Shewanella halifaxensis HAW-EB4 cytochrome bd ubiquinol oxidase subunit I YP_001673392.1 1416563 R 458817 CDS YP_001673393.1 167623099 5906982 complement(1418431..1420299) 1 NC_010334.1 PFAM: protein of unknown function DUF885; KEGG: sbl:Sbal_3032 protein of unknown function DUF885; hypothetical protein 1420299 5906982 Shal_1165 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673393.1 1418431 R 458817 CDS YP_001673394.1 167623100 5906891 complement(1420455..1421591) 1 NC_010334.1 KEGG: son:SO_3359 oxygen-independent coproporphyrinogen III oxidase, putative; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase 1421591 5906891 Shal_1166 Shewanella halifaxensis HAW-EB4 putative oxygen-independent coproporphyrinogen III oxidase YP_001673394.1 1420455 R 458817 CDS YP_001673395.1 167623101 5906892 complement(1421591..1422190) 1 NC_010334.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 1422190 5906892 Shal_1167 Shewanella halifaxensis HAW-EB4 putative deoxyribonucleotide triphosphate pyrophosphatase YP_001673395.1 1421591 R 458817 CDS YP_001673396.1 167623102 5906802 complement(1422316..1422750) 1 NC_010334.1 KEGG: slo:Shew_1133 hypothetical protein; hypothetical protein 1422750 5906802 Shal_1168 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673396.1 1422316 R 458817 CDS YP_001673397.1 167623103 5906803 complement(1422834..1423106) 1 NC_010334.1 PFAM: protein of unknown function DUF167; KEGG: she:Shewmr4_1190 hypothetical protein; hypothetical protein 1423106 5906803 Shal_1169 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673397.1 1422834 R 458817 CDS YP_001673398.1 167623104 5906642 complement(1423121..1423669) 1 NC_010334.1 PFAM: protein of unknown function YGGT; KEGG: slo:Shew_1135 protein of unknown function YGGT; hypothetical protein 1423669 5906642 Shal_1170 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673398.1 1423121 R 458817 CDS YP_001673399.1 167623105 5906595 complement(1423705..1424523) 1 NC_010334.1 KEGG: sfr:Sfri_2861 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 1424523 5906595 Shal_1171 Shewanella halifaxensis HAW-EB4 pyrroline-5-carboxylate reductase YP_001673399.1 1423705 R 458817 CDS YP_001673400.1 167623106 5906596 complement(1424676..1425377) 1 NC_010334.1 PFAM: alanine racemase domain protein; KEGG: sbl:Sbal_3025 alanine racemase domain protein; alanine racemase domain-containing protein 1425377 5906596 Shal_1172 Shewanella halifaxensis HAW-EB4 alanine racemase domain-containing protein YP_001673400.1 1424676 R 458817 CDS YP_001673401.1 167623107 5906561 1425413..1426450 1 NC_010334.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: slo:Shew_1138 twitching motility protein; twitching motility protein 1426450 5906561 Shal_1173 Shewanella halifaxensis HAW-EB4 twitching motility protein YP_001673401.1 1425413 D 458817 CDS YP_001673402.1 167623108 5906562 1426489..1427601 1 NC_010334.1 KEGG: shw:Sputw3181_1326 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 1427601 5906562 Shal_1174 Shewanella halifaxensis HAW-EB4 twitching motility protein YP_001673402.1 1426489 D 458817 CDS YP_001673403.1 167623109 5906360 1427710..1428723 1 NC_010334.1 PFAM: ferrochelatase; KEGG: shw:Sputw3181_1328 ferrochelatase; ferrochelatase 1428723 5906360 Shal_1175 Shewanella halifaxensis HAW-EB4 ferrochelatase YP_001673403.1 1427710 D 458817 CDS YP_001673404.1 167623110 5906361 complement(1428823..1429245) 1 NC_010334.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1429245 5906361 Shal_1176 Shewanella halifaxensis HAW-EB4 Holliday junction resolvase-like protein YP_001673404.1 1428823 R 458817 CDS YP_001673405.1 167623111 5906313 complement(1429298..1429870) 1 NC_010334.1 PFAM: protein of unknown function DUF179; KEGG: slo:Shew_1144 protein of unknown function DUF179; hypothetical protein 1429870 5906313 Shal_1177 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673405.1 1429298 R 458817 CDS YP_001673406.1 167623112 5906314 complement(1429882..1430211) 1 NC_010334.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 1430211 5906314 Shal_1178 Shewanella halifaxensis HAW-EB4 translation initiation factor Sui1 YP_001673406.1 1429882 R 458817 CDS YP_001673407.1 167623113 5906305 complement(1430341..1430661) 1 NC_010334.1 KEGG: sbl:Sbal_3017 hypothetical protein; hypothetical protein 1430661 5906305 Shal_1179 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673407.1 1430341 R 458817 CDS YP_001673408.1 167623114 5906171 1430826..1431386 1 NC_010334.1 KEGG: slo:Shew_1147 hypothetical protein; hypothetical protein 1431386 5906171 Shal_1180 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673408.1 1430826 D 458817 CDS YP_001673409.1 167623115 5906172 complement(1432061..1432939) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_0421 transcription regulator, LysR family; LysR family transcriptional regulator 1432939 5906172 Shal_1181 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001673409.1 1432061 R 458817 CDS YP_001673410.1 167623116 5906125 1433024..1433437 1 NC_010334.1 PFAM: transmembrane pair domain protein; KEGG: vha:VIBHAR_01850 hypothetical protein; transmembrane pair domain-containing protein 1433437 5906125 Shal_1182 Shewanella halifaxensis HAW-EB4 transmembrane pair domain-containing protein YP_001673410.1 1433024 D 458817 CDS YP_001673411.1 167623117 5906126 1433681..1435597 1 NC_010334.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_2240 receptor, putative; TonB-dependent receptor plug 1435597 5906126 Shal_1183 Shewanella halifaxensis HAW-EB4 TonB-dependent receptor plug YP_001673411.1 1433681 D 458817 CDS YP_001673412.1 167623118 5906117 1435899..1436498 1 NC_010334.1 PFAM: OmpA/MotB domain protein; KEGG: sbm:Shew185_3027 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1436498 5906117 Shal_1184 Shewanella halifaxensis HAW-EB4 OmpA/MotB domain-containing protein YP_001673412.1 1435899 D 458817 CDS YP_001673413.1 167623119 5906118 1436528..1437352 1 NC_010334.1 PFAM: MscS Mechanosensitive ion channel; KEGG: slo:Shew_1152 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 1437352 5906118 Shal_1185 Shewanella halifaxensis HAW-EB4 mechanosensitive ion channel protein MscS YP_001673413.1 1436528 D 458817 CDS YP_001673414.1 167623120 5905988 complement(1437445..1438083) 1 NC_010334.1 PFAM: protein of unknown function UPF0126; KEGG: sfr:Sfri_0596 protein of unknown function UPF0126; hypothetical protein 1438083 5905988 Shal_1186 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673414.1 1437445 R 458817 CDS YP_001673415.1 167623121 5905989 1438422..1439438 1 NC_010334.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sbm:Shew185_3026 threonine aldolase; threonine aldolase 1439438 5905989 Shal_1187 Shewanella halifaxensis HAW-EB4 threonine aldolase YP_001673415.1 1438422 D 458817 CDS YP_001673416.1 167623122 5904998 complement(1439535..1439744) 1 NC_010334.1 KEGG: slo:Shew_1160 hypothetical protein; hypothetical protein 1439744 5904998 Shal_1188 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673416.1 1439535 R 458817 CDS YP_001673417.1 167623123 5904999 complement(1440983..1441516) 1 NC_010334.1 PFAM: protein of unknown function DUF442; KEGG: shw:Sputw3181_4004 hypothetical protein; hypothetical protein 1441516 5904999 Shal_1189 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673417.1 1440983 R 458817 CDS YP_001673418.1 167623124 5904771 1442059..1443582 1 NC_010334.1 PFAM: Integrase catalytic region; KEGG: kpn:KPN_pKPN3p05906 Sea24; integrase catalytic subunit 1443582 5904771 Shal_1190 Shewanella halifaxensis HAW-EB4 integrase catalytic subunit YP_001673418.1 1442059 D 458817 CDS YP_001673419.1 167623125 5904645 complement(1444034..1445335) 1 NC_010334.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_1161 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1445335 5904645 Shal_1191 Shewanella halifaxensis HAW-EB4 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001673419.1 1444034 R 458817 CDS YP_001673420.1 167623126 5904646 complement(1445328..1445606) 1 NC_010334.1 hypothetical protein 1445606 5904646 Shal_1192 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673420.1 1445328 R 458817 CDS YP_001673421.1 167623127 5904408 complement(1445738..1446100) 1 NC_010334.1 KEGG: slo:Shew_1162 hypothetical protein; hypothetical protein 1446100 5904408 Shal_1193 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673421.1 1445738 R 458817 CDS YP_001673422.1 167623128 5904409 1446559..1447716 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_1163 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1447716 5904409 Shal_1194 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001673422.1 1446559 D 458817 CDS YP_001673423.1 167623129 5904075 1447887..1451045 1 NC_010334.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: slo:Shew_1164 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1451045 5904075 Shal_1195 Shewanella halifaxensis HAW-EB4 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001673423.1 1447887 D 458817 CDS YP_001673424.1 167623130 5904076 complement(1451576..1452724) 1 NC_010334.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: slo:Shew_1166 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 1452724 5904076 Shal_1196 Shewanella halifaxensis HAW-EB4 iron-containing alcohol dehydrogenase YP_001673424.1 1451576 R 458817 CDS YP_001673425.1 167623131 5906989 complement(1453055..1453573) 1 NC_010334.1 PFAM: protein of unknown function DUF88; KEGG: sbl:Sbal_3176 protein of unknown function DUF88; hypothetical protein 1453573 5906989 Shal_1197 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673425.1 1453055 R 458817 CDS YP_001673426.1 167623132 5906990 complement(1454147..1457254) 1 NC_010334.1 PFAM: acriflavin resistance protein; KEGG: spc:Sputcn32_2787 acriflavin resistance protein; acriflavin resistance protein 1457254 5906990 Shal_1198 Shewanella halifaxensis HAW-EB4 acriflavin resistance protein YP_001673426.1 1454147 R 458817 CDS YP_001673427.1 167623133 5905522 complement(1457255..1458358) 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shw:Sputw3181_1226 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1458358 5905522 Shal_1199 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001673427.1 1457255 R 458817 CDS YP_001673428.1 167623134 5905899 complement(1458649..1459719) 1 NC_010334.1 PFAM: metallophosphoesterase; KEGG: slo:Shew_1182 metallophosphoesterase; metallophosphoesterase 1459719 5905899 Shal_1200 Shewanella halifaxensis HAW-EB4 metallophosphoesterase YP_001673428.1 1458649 R 458817 CDS YP_001673429.1 167623135 5905900 complement(1459791..1460873) 1 NC_010334.1 PFAM: acyltransferase 3; KEGG: vvy:VVA1443 hypothetical protein; acyltransferase 3 1460873 5905900 Shal_1201 Shewanella halifaxensis HAW-EB4 acyltransferase 3 YP_001673429.1 1459791 R 458817 CDS YP_001673430.1 167623136 5906245 complement(1461214..1462881) 1 NC_010334.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1462881 5906245 Shal_1202 Shewanella halifaxensis HAW-EB4 putative ABC transporter ATP-binding protein YP_001673430.1 1461214 R 458817 CDS YP_001673431.1 167623137 5906246 1463160..1464416 1 NC_010334.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1464416 glyA 5906246 glyA Shewanella halifaxensis HAW-EB4 serine hydroxymethyltransferase YP_001673431.1 1463160 D 458817 CDS YP_001673432.1 167623138 5904021 1464570..1465019 1 NC_010334.1 PFAM: ATP-cone domain protein; KEGG: slo:Shew_1186 ATP-cone domain protein; transcriptional regulator NrdR 1465019 nrdR 5904021 nrdR Shewanella halifaxensis HAW-EB4 transcriptional regulator NrdR YP_001673432.1 1464570 D 458817 CDS YP_001673433.1 167623139 5904022 1465088..1466209 1 NC_010334.1 KEGG: son:SO_3469 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 1466209 5904022 Shal_1205 Shewanella halifaxensis HAW-EB4 riboflavin biosynthesis protein RibD YP_001673433.1 1465088 D 458817 CDS YP_001673434.1 167623140 5906932 1466213..1466878 1 NC_010334.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1466878 5906932 Shal_1206 Shewanella halifaxensis HAW-EB4 riboflavin synthase subunit alpha YP_001673434.1 1466213 D 458817 CDS YP_001673435.1 167623141 5906933 1467038..1468141 1 NC_010334.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: sdn:Sden_1146 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1468141 5906933 Shal_1207 Shewanella halifaxensis HAW-EB4 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001673435.1 1467038 D 458817 CDS YP_001673436.1 167623142 5904290 1468287..1468763 1 NC_010334.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1468763 ribH 5904290 ribH Shewanella halifaxensis HAW-EB4 6,7-dimethyl-8-ribityllumazine synthase YP_001673436.1 1468287 D 458817 CDS YP_001673437.1 167623143 5904291 1468778..1469185 1 NC_010334.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1469185 nusB 5904291 nusB Shewanella halifaxensis HAW-EB4 transcription antitermination protein NusB YP_001673437.1 1468778 D 458817 CDS YP_001673438.1 167623144 5902739 1469348..1470319 1 NC_010334.1 KEGG: shw:Sputw3181_1239 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 1470319 5902739 Shal_1210 Shewanella halifaxensis HAW-EB4 thiamine-monophosphate kinase YP_001673438.1 1469348 D 458817 CDS YP_001673439.1 167623145 5906248 1470319..1470813 1 NC_010334.1 PFAM: phosphatidylglycerophosphatase A; KEGG: slo:Shew_1193 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase A 1470813 5906248 Shal_1211 Shewanella halifaxensis HAW-EB4 phosphatidylglycerophosphatase A YP_001673439.1 1470319 D 458817 CDS YP_001673440.1 167623146 5906249 complement(1470897..1472558) 1 NC_010334.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: slo:Shew_1196 DNA repair protein RecN; recombination and repair protein 1472558 5906249 Shal_1212 Shewanella halifaxensis HAW-EB4 recombination and repair protein YP_001673440.1 1470897 R 458817 CDS YP_001673441.1 167623147 5906823 complement(1473192..1473344) 1 NC_010334.1 KEGG: vfi:VF1081 transcriptional regulator, TetR family; TetR family transcriptional regulator 1473344 5906823 Shal_1213 Shewanella halifaxensis HAW-EB4 TetR family transcriptional regulator YP_001673441.1 1473192 R 458817 CDS YP_001673442.1 167623148 5906824 complement(1473644..1473967) 1 NC_010334.1 KEGG: ppr:PBPRB1507 hypothetical protein; hypothetical protein 1473967 5906824 Shal_1214 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673442.1 1473644 R 458817 CDS YP_001673443.1 167623149 5906052 1475698..1476600 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_1106 transcriptional regulator, LysR family; LysR family transcriptional regulator 1476600 5906052 Shal_1215 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001673443.1 1475698 D 458817 CDS YP_001673444.1 167623150 5906053 complement(1476722..1477327) 1 NC_010334.1 PFAM: protein of unknown function DUF416; KEGG: slo:Shew_1199 protein of unknown function DUF416; hypothetical protein 1477327 5906053 Shal_1216 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673444.1 1476722 R 458817 CDS YP_001673445.1 167623151 5906489 complement(1477329..1480118) 1 NC_010334.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 1480118 5906489 Shal_1217 Shewanella halifaxensis HAW-EB4 hybrid sensory histidine kinase BarA YP_001673445.1 1477329 R 458817 CDS YP_001673446.1 167623152 5906490 1480217..1481554 1 NC_010334.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1481554 rumA 5906490 rumA Shewanella halifaxensis HAW-EB4 23S rRNA 5-methyluridine methyltransferase YP_001673446.1 1480217 D 458817 CDS YP_001673447.1 167623153 5905949 1481771..1483978 1 NC_010334.1 KEGG: slo:Shew_1202 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1483978 5905949 Shal_1219 Shewanella halifaxensis HAW-EB4 (p)ppGpp synthetase I SpoT/RelA YP_001673447.1 1481771 D 458817 CDS YP_001673448.1 167623154 5903956 1484116..1484919 1 NC_010334.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1484919 mazG 5903956 mazG Shewanella halifaxensis HAW-EB4 nucleoside triphosphate pyrophosphohydrolase YP_001673448.1 1484116 D 458817 CDS YP_001673449.1 167623155 5903957 1485035..1486675 1 NC_010334.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1486675 pyrG 5903957 pyrG Shewanella halifaxensis HAW-EB4 CTP synthetase YP_001673449.1 1485035 D 458817 CDS YP_001673450.1 167623156 5903912 1487068..1488363 1 NC_010334.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1488363 eno 5903912 eno Shewanella halifaxensis HAW-EB4 phosphopyruvate hydratase YP_001673450.1 1487068 D 458817 CDS YP_001673451.1 167623157 5903913 1488454..1488750 1 NC_010334.1 PFAM: Septum formation initiator; KEGG: slo:Shew_1206 septum formation initiator; septum formation initiator 1488750 5903913 Shal_1223 Shewanella halifaxensis HAW-EB4 septum formation initiator YP_001673451.1 1488454 D 458817 CDS YP_001673452.1 167623158 5903876 1488829..1489521 1 NC_010334.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1489521 ispD 5903876 ispD Shewanella halifaxensis HAW-EB4 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001673452.1 1488829 D 458817 CDS YP_001673453.1 167623159 5903877 1489561..1490040 1 NC_010334.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1490040 ispF 5903877 ispF Shewanella halifaxensis HAW-EB4 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_001673453.1 1489561 D 458817 CDS YP_001673454.1 167623160 5903840 1490131..1491195 1 NC_010334.1 PFAM: tRNA pseudouridine synthase D TruD; KEGG: shw:Sputw3181_1259 pseudouridylate synthase; tRNA pseudouridine synthase D TruD 1491195 5903840 Shal_1226 Shewanella halifaxensis HAW-EB4 tRNA pseudouridine synthase D TruD YP_001673454.1 1490131 D 458817 CDS YP_001673455.1 167623161 5903841 1491195..1491947 1 NC_010334.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1491947 surE 5903841 surE Shewanella halifaxensis HAW-EB4 stationary phase survival protein SurE YP_001673455.1 1491195 D 458817 CDS YP_001673456.1 167623162 5903916 1492049..1492684 1 NC_010334.1 KEGG: sdn:Sden_1202 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1492684 5903916 Shal_1228 Shewanella halifaxensis HAW-EB4 protein-L-isoaspartate O-methyltransferase YP_001673456.1 1492049 D 458817 CDS YP_001673457.1 167623163 5903917 1492749..1493642 1 NC_010334.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: slo:Shew_1212 peptidase M23B; peptidase M23B 1493642 5903917 Shal_1229 Shewanella halifaxensis HAW-EB4 peptidase M23B YP_001673457.1 1492749 D 458817 CDS YP_001673458.1 167623164 5904105 1493719..1494684 1 NC_010334.1 TIGRFAM: RNA polymerase sigma factor RpoS; RNA polymerase sigma-70; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: slo:Shew_1213 RNA polymerase, sigma 70 subunit, RpoD family; RpoD family RNA polymerase sigma factor 1494684 5904105 Shal_1230 Shewanella halifaxensis HAW-EB4 RpoD family RNA polymerase sigma factor YP_001673458.1 1493719 D 458817 CDS YP_001673459.1 167623165 5904112 complement(1494804..1497383) 1 NC_010334.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1497383 5904112 Shal_1231 Shewanella halifaxensis HAW-EB4 DNA mismatch repair protein MutS YP_001673459.1 1494804 R 458817 CDS YP_001673460.1 167623166 5904113 1497704..1498771 1 NC_010334.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1498771 recA 5904113 recA Shewanella halifaxensis HAW-EB4 recombinase A YP_001673460.1 1497704 D 458817 CDS YP_001673461.1 167623167 5903828 1499301..1501925 1 NC_010334.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1501925 alaS 5903828 alaS Shewanella halifaxensis HAW-EB4 alanyl-tRNA synthetase YP_001673461.1 1499301 D 458817 CDS YP_001673462.1 167623168 5903829 1502439..1502636 1 NC_010334.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1502636 5903829 Shal_1234 Shewanella halifaxensis HAW-EB4 carbon storage regulator YP_001673462.1 1502439 D 458817 CDS YP_001673463.1 167623169 5903856 1504819..1505070 1 NC_010334.1 TIGRFAM: sodium pump decarboxylase, gamma subunit; PFAM: sodium pump decarboxylase gamma subunit; KEGG: sfr:Sfri_1065 sodium pump decarboxylases, gamma subunit; sodium pump decarboxylase subunit gamma 1505070 5903856 Shal_1235 Shewanella halifaxensis HAW-EB4 sodium pump decarboxylase subunit gamma YP_001673463.1 1504819 D 458817 CDS YP_001673464.1 167623170 5904049 1505086..1506897 1 NC_010334.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 1506897 5904049 Shal_1236 Shewanella halifaxensis HAW-EB4 oxaloacetate decarboxylase YP_001673464.1 1505086 D 458817 CDS YP_001673465.1 167623171 5907048 1506906..1508036 1 NC_010334.1 KEGG: sfr:Sfri_1067 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; sodium ion-translocating decarboxylase subunit beta 1508036 5907048 Shal_1237 Shewanella halifaxensis HAW-EB4 sodium ion-translocating decarboxylase subunit beta YP_001673465.1 1506906 D 458817 CDS YP_001673466.1 167623172 5907049 complement(1508549..1508734) 1 NC_010334.1 KEGG: slo:Shew_1223 hypothetical protein; hypothetical protein 1508734 5907049 Shal_1238 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673466.1 1508549 R 458817 CDS YP_001673467.1 167623173 5903296 complement(1508834..1510084) 1 NC_010334.1 PFAM: sodium:dicarboxylate symporter; KEGG: slo:Shew_1224 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1510084 5903296 Shal_1239 Shewanella halifaxensis HAW-EB4 sodium:dicarboxylate symporter YP_001673467.1 1508834 R 458817 CDS YP_001673468.1 167623174 5904228 1510562..1513399 1 NC_010334.1 PFAM: peptidase M16 domain protein; KEGG: slo:Shew_1226 peptidase M16 domain protein; peptidase M16 domain-containing protein 1513399 5904228 Shal_1240 Shewanella halifaxensis HAW-EB4 peptidase M16 domain-containing protein YP_001673468.1 1510562 D 458817 CDS YP_001673469.1 167623175 5904229 1513579..1515147 1 NC_010334.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 1515147 5904229 Shal_1241 Shewanella halifaxensis HAW-EB4 glutamate--cysteine ligase YP_001673469.1 1513579 D 458817 CDS YP_001673470.1 167623176 5904596 1515177..1515590 1 NC_010334.1 KEGG: slo:Shew_1228 hypothetical protein; hypothetical protein 1515590 5904596 Shal_1242 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673470.1 1515177 D 458817 CDS YP_001673471.1 167623177 5904597 1515715..1516332 1 NC_010334.1 KEGG: slo:Shew_1229 hypothetical protein; hypothetical protein 1516332 5904597 Shal_1243 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673471.1 1515715 D 458817 CDS YP_001673472.1 167623178 5905309 complement(1516435..1517679) 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: shn:Shewana3_3157 diguanylate cyclase with GAF sensor; GAF sensor-containing diguanylate cyclase 1517679 5905309 Shal_1244 Shewanella halifaxensis HAW-EB4 GAF sensor-containing diguanylate cyclase YP_001673472.1 1516435 R 458817 CDS YP_001673473.1 167623179 5905310 1518032..1518535 1 NC_010334.1 KEGG: slo:Shew_1230 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 1518535 5905310 Shal_1245 Shewanella halifaxensis HAW-EB4 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001673473.1 1518032 D 458817 CDS YP_001673474.1 167623180 5905496 1518787..1519404 1 NC_010334.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sbl:Sbal_1039 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1519404 5905496 Shal_1246 Shewanella halifaxensis HAW-EB4 ECF subfamily RNA polymerase sigma-24 factor YP_001673474.1 1518787 D 458817 CDS YP_001673475.1 167623181 5905497 1519394..1519960 1 NC_010334.1 KEGG: slo:Shew_1232 hypothetical protein; hypothetical protein 1519960 5905497 Shal_1247 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673475.1 1519394 D 458817 CDS YP_001673476.1 167623182 5905536 complement(1520060..1520476) 1 NC_010334.1 KEGG: slo:Shew_1233 hypothetical protein; hypothetical protein 1520476 5905536 Shal_1248 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673476.1 1520060 R 458817 CDS YP_001673477.1 167623183 5905537 1520811..1524089 1 NC_010334.1 PFAM: peptidase S41; WD40 domain protein beta Propeller; SMART: PDZ/DHR/GLGF domain protein; KEGG: shw:Sputw3181_1281 peptidase S41; peptidase S41 1524089 5905537 Shal_1249 Shewanella halifaxensis HAW-EB4 peptidase S41 YP_001673477.1 1520811 D 458817 CDS YP_001673478.1 167623184 5905366 1524417..1525559 1 NC_010334.1 PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRB1792 hypothetical secretion protein; secretion protein HlyD family protein 1525559 5905366 Shal_1250 Shewanella halifaxensis HAW-EB4 secretion protein HlyD family protein YP_001673478.1 1524417 D 458817 CDS YP_001673479.1 167623185 5906366 1525549..1526616 1 NC_010334.1 KEGG: ppr:PBPRB1793 hypothetical protein; hypothetical protein 1526616 5906366 Shal_1251 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673479.1 1525549 D 458817 CDS YP_001673480.1 167623186 5906367 1526959..1527543 1 NC_010334.1 KEGG: slo:Shew_2686 putative lipoprotein; putative lipoprotein 1527543 5906367 Shal_1252 Shewanella halifaxensis HAW-EB4 putative lipoprotein YP_001673480.1 1526959 D 458817 CDS YP_001673481.1 167623187 5906291 complement(1527627..1528073) 1 NC_010334.1 PFAM: OsmC family protein; KEGG: sbm:Shew185_1278 OsmC family protein; OsmC family protein 1528073 5906291 Shal_1253 Shewanella halifaxensis HAW-EB4 OsmC family protein YP_001673481.1 1527627 R 458817 CDS YP_001673482.1 167623188 5906292 complement(1528422..1528928) 1 NC_010334.1 KEGG: sbl:Sbal_1233 hypothetical protein; hypothetical protein 1528928 5906292 Shal_1254 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673482.1 1528422 R 458817 CDS YP_001673483.1 167623189 5906264 complement(1529118..1529429) 1 NC_010334.1 KEGG: sbm:Shew185_1279 hypothetical protein; hypothetical protein 1529429 5906264 Shal_1255 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673483.1 1529118 R 458817 CDS YP_001673484.1 167623190 5906265 complement(1529447..1531090) 1 NC_010334.1 KEGG: spc:Sputcn32_2728 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein 1531090 5906265 Shal_1256 Shewanella halifaxensis HAW-EB4 PepSY-associated TM helix domain-containing protein YP_001673484.1 1529447 R 458817 CDS YP_001673485.1 167623191 5906006 complement(1531094..1531393) 1 NC_010334.1 KEGG: sbl:Sbal_0110 hypothetical protein; hypothetical protein 1531393 5906006 Shal_1257 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673485.1 1531094 R 458817 CDS YP_001673486.1 167623192 5906007 1531992..1532348 1 NC_010334.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO_3403 ribosomal subunit interface protein; sigma 54 modulation protein/30S ribosomal protein S30EA 1532348 5906007 Shal_1258 Shewanella halifaxensis HAW-EB4 sigma 54 modulation protein/30S ribosomal protein S30EA YP_001673486.1 1531992 D 458817 CDS YP_001673487.1 167623193 5907033 complement(1532532..1534460) 1 NC_010334.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: vha:VIBHAR_05273 hypothetical protein; potassium efflux system protein 1534460 5907033 Shal_1259 Shewanella halifaxensis HAW-EB4 potassium efflux system protein YP_001673487.1 1532532 R 458817 CDS YP_001673488.1 167623194 5904453 complement(1534460..1535080) 1 NC_010334.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: vpa:VPA0465 putative NAD(P)H oxidoreductase; NAD(P)H dehydrogenase (quinone) 1535080 5904453 Shal_1260 Shewanella halifaxensis HAW-EB4 NAD(P)H dehydrogenase (quinone) YP_001673488.1 1534460 R 458817 CDS YP_001673489.1 167623195 5904454 1535466..1536677 1 NC_010334.1 PFAM: NnrS family protein; KEGG: shw:Sputw3181_3742 NnrS family protein; NnrS family protein 1536677 5904454 Shal_1261 Shewanella halifaxensis HAW-EB4 NnrS family protein YP_001673489.1 1535466 D 458817 CDS YP_001673490.1 167623196 5904643 1536764..1538173 1 NC_010334.1 PFAM: cytochrome c552; KEGG: slo:Shew_0505 nitrite reductase (cytochrome; ammonia-forming); nitrite reductase 1538173 5904643 Shal_1262 Shewanella halifaxensis HAW-EB4 nitrite reductase YP_001673490.1 1536764 D 458817 CDS YP_001673491.1 167623197 5904644 1538356..1538844 1 NC_010334.1 hypothetical protein 1538844 5904644 Shal_1263 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673491.1 1538356 D 458817 CDS YP_001673492.1 167623198 5904443 1538890..1539951 1 NC_010334.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pfl:PFL_0202 transcriptional regulator, AraC family; AraC family transcriptional regulator 1539951 5904443 Shal_1264 Shewanella halifaxensis HAW-EB4 AraC family transcriptional regulator YP_001673492.1 1538890 D 458817 CDS YP_001673493.1 167623199 5904444 1540123..1542135 1 NC_010334.1 PFAM: beta-lactamase domain protein; KEGG: pfo:Pfl_2280 beta-lactamase-like; beta-lactamase domain-containing protein 1542135 5904444 Shal_1265 Shewanella halifaxensis HAW-EB4 beta-lactamase domain-containing protein YP_001673493.1 1540123 D 458817 CDS YP_001673494.1 167623200 5904292 complement(1543220..1545457) 1 NC_010334.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 1545457 fadE 5904292 fadE Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase YP_001673494.1 1543220 R 458817 CDS YP_001673495.1 167623201 5904293 complement(1545842..1547029) 1 NC_010334.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 1547029 5904293 Shal_1267 Shewanella halifaxensis HAW-EB4 ribosome-associated GTPase YP_001673495.1 1545842 R 458817 CDS YP_001673496.1 167623202 5904641 complement(1547555..1548196) 1 NC_010334.1 hypothetical protein 1548196 5904641 Shal_1268 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673496.1 1547555 R 458817 CDS YP_001673497.1 167623203 5904642 1548367..1548705 1 NC_010334.1 hypothetical protein 1548705 5904642 Shal_1269 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673497.1 1548367 D 458817 CDS YP_001673498.1 167623204 5904511 1548730..1550031 1 NC_010334.1 PFAM: beta-lactamase; KEGG: ppr:PBPRB1966 hypothetical protein; beta-lactamase 1550031 5904511 Shal_1270 Shewanella halifaxensis HAW-EB4 beta-lactamase YP_001673498.1 1548730 D 458817 CDS YP_001673499.1 167623205 5904499 1550864..1551562 1 NC_010334.1 hypothetical protein 1551562 5904499 Shal_1271 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673499.1 1550864 D 458817 CDS YP_001673500.1 167623206 5904500 1551630..1551890 1 NC_010334.1 PFAM: protein of unknown function DUF333; KEGG: sbm:Shew185_0128 protein of unknown function DUF333; hypothetical protein 1551890 5904500 Shal_1272 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673500.1 1551630 D 458817 CDS YP_001673501.1 167623207 5904441 complement(1552027..1552545) 1 NC_010334.1 KEGG: cps:CPS_3362 putative lipoprotein; putative lipoprotein 1552545 5904441 Shal_1273 Shewanella halifaxensis HAW-EB4 putative lipoprotein YP_001673501.1 1552027 R 458817 CDS YP_001673502.1 167623208 5904442 complement(1552557..1554716) 1 NC_010334.1 KEGG: vfi:VFA0120 hypothetical cytosolic protein; hypothetical protein 1554716 5904442 Shal_1274 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673502.1 1552557 R 458817 CDS YP_001673503.1 167623209 5904439 1555237..1556412 1 NC_010334.1 PFAM: glycosyl transferase group 1; KEGG: aba:Acid345_4031 glycosyl transferase, group 1; group 1 glycosyl transferase 1556412 5904439 Shal_1275 Shewanella halifaxensis HAW-EB4 group 1 glycosyl transferase YP_001673503.1 1555237 D 458817 CDS YP_001673504.1 167623210 5904440 1556402..1558612 1 NC_010334.1 PFAM: extracellular solute-binding protein family 3; sodium:dicarboxylate symporter; KEGG: slo:Shew_3001 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1558612 5904440 Shal_1276 Shewanella halifaxensis HAW-EB4 extracellular solute-binding protein YP_001673504.1 1556402 D 458817 CDS YP_001673505.1 167623211 5904404 1558661..1559482 1 NC_010334.1 KEGG: rde:RD1_0117 hypothetical protein; hypothetical protein 1559482 5904404 Shal_1277 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673505.1 1558661 D 458817 CDS YP_001673506.1 167623212 5904405 complement(1559511..1560509) 1 NC_010334.1 KEGG: cps:CPS_1463 hypothetical protein; hypothetical protein 1560509 5904405 Shal_1278 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673506.1 1559511 R 458817 CDS YP_001673507.1 167623213 5904268 1560959..1561687 1 NC_010334.1 hypothetical protein 1561687 5904268 Shal_1279 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673507.1 1560959 D 458817 CDS YP_001673508.1 167623214 5904269 1561691..1563208 1 NC_010334.1 PFAM: EAL domain protein; KEGG: sec:SC4143 putative diguanylate cyclase/phosphodiesterase; diguanylate phosphodiesterase 1563208 5904269 Shal_1280 Shewanella halifaxensis HAW-EB4 diguanylate phosphodiesterase YP_001673508.1 1561691 D 458817 CDS YP_001673509.1 167623215 5904267 complement(1563328..1563888) 1 NC_010334.1 PFAM: CBS domain containing protein; KEGG: mmw:Mmwyl1_2459 CBS domain containing protein; hypothetical protein 1563888 5904267 Shal_1281 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673509.1 1563328 R 458817 CDS YP_001673510.1 167623216 5903286 1564193..1564915 1 NC_010334.1 NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 1564915 5903286 Shal_1282 Shewanella halifaxensis HAW-EB4 nitroreductase A YP_001673510.1 1564193 D 458817 CDS YP_001673511.1 167623217 5903287 1565117..1565644 1 NC_010334.1 PFAM: PEBP family protein; KEGG: vfi:VFA0932 putative phospholipid-binding protein; PEBP family protein 1565644 5903287 Shal_1283 Shewanella halifaxensis HAW-EB4 PEBP family protein YP_001673511.1 1565117 D 458817 CDS YP_001673512.1 167623218 5903858 1565690..1566499 1 NC_010334.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: vfi:VFA0931 transcriptional regulatory, AraC-like; AraC family transcriptional regulator 1566499 5903858 Shal_1284 Shewanella halifaxensis HAW-EB4 AraC family transcriptional regulator YP_001673512.1 1565690 D 458817 CDS YP_001673513.1 167623219 5903859 1567303..1567644 1 NC_010334.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: slo:Shew_1931 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA 1567644 5903859 Shal_1285 Shewanella halifaxensis HAW-EB4 alkylphosphonate utilization operon protein PhnA YP_001673513.1 1567303 D 458817 CDS YP_001673514.1 167623220 5903420 complement(1567718..1568530) 1 NC_010334.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: shm:Shewmr7_0453 transcriptional regulator, AraC family; AraC family transcriptional regulator 1568530 5903420 Shal_1286 Shewanella halifaxensis HAW-EB4 AraC family transcriptional regulator YP_001673514.1 1567718 R 458817 CDS YP_001673515.1 167623221 5903421 1568632..1569165 1 NC_010334.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: she:Shewmr4_3500 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase 1569165 5903421 Shal_1287 Shewanella halifaxensis HAW-EB4 alkylhydroperoxidase YP_001673515.1 1568632 D 458817 CDS YP_001673516.1 167623222 5903254 1569184..1569621 1 NC_010334.1 PFAM: protein of unknown function DUF417; KEGG: aha:AHA_4046 MC21 protein; hypothetical protein 1569621 5903254 Shal_1288 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673516.1 1569184 D 458817 CDS YP_001673517.1 167623223 5903255 1570182..1570508 1 NC_010334.1 KEGG: sdn:Sden_3580 integrase, catalytic region; integrase, catalytic region 1570508 5903255 Shal_1289 Shewanella halifaxensis HAW-EB4 integrase, catalytic region YP_001673517.1 1570182 D 458817 CDS YP_001673518.1 167623224 5902759 complement(1571347..1572246) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: son:SO_1422 transcriptional regulator, LysR family; LysR family transcriptional regulator 1572246 5902759 Shal_1291 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001673518.1 1571347 R 458817 CDS YP_001673519.1 167623225 5903268 1573256..1573825 1 NC_010334.1 KEGG: sfr:Sfri_3983 methylation site containing protein; hypothetical protein 1573825 5903268 Shal_1292 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673519.1 1573256 D 458817 CDS YP_001673520.1 167623226 5904785 1573997..1575580 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: vfi:VFA0475 Sensory box/GGDEF family protein; diguanylate cyclase/phosphodiesterase 1575580 5904785 Shal_1293 Shewanella halifaxensis HAW-EB4 diguanylate cyclase/phosphodiesterase YP_001673520.1 1573997 D 458817 CDS YP_001673521.1 167623227 5904786 1575702..1576013 1 NC_010334.1 KEGG: cpt:CpB0806 2-cys peroxiredoxin BAS1 precursor; peroxiredoxin-like protein 1576013 5904786 Shal_1294 Shewanella halifaxensis HAW-EB4 peroxiredoxin-like protein YP_001673521.1 1575702 D 458817 CDS YP_001673522.1 167623228 5904902 1576102..1577742 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: vco:VC0395_A1249 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1577742 5904902 Shal_1295 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis sensory transducer YP_001673522.1 1576102 D 458817 CDS YP_001673523.1 167623229 5904903 1577886..1580855 1 NC_010334.1 KEGG: slo:Shew_0402 MSHA biogenesis protein MshQ; MSHA biogenesis protein MshQ 1580855 5904903 Shal_1296 Shewanella halifaxensis HAW-EB4 MSHA biogenesis protein MshQ YP_001673523.1 1577886 D 458817 CDS YP_001673524.1 167623230 5904869 complement(1580874..1581065) 1 NC_010334.1 KEGG: shm:Shewmr7_2855 phage integrase family protein; hypothetical protein 1581065 5904869 Shal_1297 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673524.1 1580874 R 458817 CDS YP_001673525.1 167623231 5904870 complement(1581167..1582357) 1 NC_010334.1 KEGG: shn:Shewana3_2687 NAD-dependent DNA ligase (contains BRCT domain type II)-like protein; hypothetical protein 1582357 5904870 Shal_1298 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673525.1 1581167 R 458817 CDS YP_001673526.1 167623232 5904893 complement(1583979..1584164) 1 NC_010334.1 KEGG: shw:Sputw3181_2916 phage integrase family protein; phage integrase family protein 1584164 5904893 Shal_1299 Shewanella halifaxensis HAW-EB4 phage integrase family protein YP_001673526.1 1583979 R 458817 CDS YP_001673527.1 167623233 5904894 1584532..1585779 1 NC_010334.1 KEGG: nmu:Nmul_A0120 ATP-dependent endonuclease of the OLD family-like; ATP-dependent OLD family endonuclease 1585779 5904894 Shal_1300 Shewanella halifaxensis HAW-EB4 ATP-dependent OLD family endonuclease YP_001673527.1 1584532 D 458817 CDS YP_001673528.1 167623234 5904927 1585772..1586353 1 NC_010334.1 KEGG: nmu:Nmul_A0121 hypothetical protein; hypothetical protein 1586353 5904927 Shal_1301 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673528.1 1585772 D 458817 CDS YP_001673529.1 167623235 5904928 complement(1586452..1586625) 1 NC_010334.1 KEGG: shw:Sputw3181_2916 phage integrase family protein; phage integrase family protein 1586625 5904928 Shal_1302 Shewanella halifaxensis HAW-EB4 phage integrase family protein YP_001673529.1 1586452 R 458817 CDS YP_001673530.1 167623236 5904956 complement(1587216..1587716) 1 NC_010334.1 KEGG: vvy:VV1784 hypothetical protein; hypothetical protein 1587716 5904956 Shal_1303 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673530.1 1587216 R 458817 CDS YP_001673531.1 167623237 5904978 complement(1587770..1588795) 1 NC_010334.1 PFAM: integrase family protein; KEGG: shw:Sputw3181_2916 phage integrase family protein; integrase family protein 1588795 5904978 Shal_1304 Shewanella halifaxensis HAW-EB4 integrase family protein YP_001673531.1 1587770 R 458817 CDS YP_001673532.1 167623238 5904979 complement(1588796..1589986) 1 NC_010334.1 KEGG: shn:Shewana3_2687 NAD-dependent DNA ligase (contains BRCT domain type II)-like protein; hypothetical protein 1589986 5904979 Shal_1305 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673532.1 1588796 R 458817 CDS YP_001673533.1 167623239 5905022 complement(1590006..1590695) 1 NC_010334.1 PFAM: CI repressor; KEGG: sbl:Sbal_1269 bacteriophage CI repressor; CI repressor 1590695 5905022 Shal_1306 Shewanella halifaxensis HAW-EB4 CI repressor YP_001673533.1 1590006 R 458817 CDS YP_001673534.1 167623240 5905023 1590780..1590986 1 NC_010334.1 KEGG: shm:Shewmr7_0701 hypothetical protein; hypothetical protein 1590986 5905023 Shal_1307 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673534.1 1590780 D 458817 CDS YP_001673535.1 167623241 5905089 1591055..1591597 1 NC_010334.1 PFAM: regulatory CII family protein; KEGG: shm:Shewmr7_0702 phage regulatory CII family protein; regulatory CII family protein 1591597 5905089 Shal_1308 Shewanella halifaxensis HAW-EB4 regulatory CII family protein YP_001673535.1 1591055 D 458817 CDS YP_001673536.1 167623242 5905090 1591610..1592056 1 NC_010334.1 KEGG: shm:Shewmr7_0704 hypothetical protein; hypothetical protein 1592056 5905090 Shal_1309 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673536.1 1591610 D 458817 CDS YP_001673537.1 167623243 5905093 1592136..1592375 1 NC_010334.1 KEGG: shm:Shewmr7_0705 hypothetical protein; hypothetical protein 1592375 5905093 Shal_1310 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673537.1 1592136 D 458817 CDS YP_001673538.1 167623244 5905094 1592377..1592682 1 NC_010334.1 KEGG: shm:Shewmr7_0706 hypothetical protein; hypothetical protein 1592682 5905094 Shal_1311 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673538.1 1592377 D 458817 CDS YP_001673539.1 167623245 5905101 1592876..1593112 1 NC_010334.1 KEGG: sbl:Sbal_1274 hypothetical protein; hypothetical protein 1593112 5905101 Shal_1312 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673539.1 1592876 D 458817 CDS YP_001673540.1 167623246 5905102 1593109..1593363 1 NC_010334.1 KEGG: sbl:Sbal_1276 hypothetical protein; hypothetical protein 1593363 5905102 Shal_1313 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673540.1 1593109 D 458817 CDS YP_001673541.1 167623247 5905186 1593363..1595663 1 NC_010334.1 PFAM: replication gene A; KEGG: shw:Sputw3181_2905 bacteriophage replication gene A; replication gene A 1595663 5905186 Shal_1314 Shewanella halifaxensis HAW-EB4 replication gene A YP_001673541.1 1593363 D 458817 CDS YP_001673542.1 167623248 5905245 1595898..1596284 1 NC_010334.1 hypothetical protein 1596284 5905245 Shal_1315 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673542.1 1595898 D 458817 CDS YP_001673543.1 167623249 5905246 complement(1596548..1596799) 1 NC_010334.1 PFAM: transcriptional activator Ogr/delta; KEGG: shw:Sputw3181_2904 phage transcriptional activator, Ogr/delta; transcriptional activator Ogr/delta 1596799 5905246 Shal_1316 Shewanella halifaxensis HAW-EB4 transcriptional activator Ogr/delta YP_001673543.1 1596548 R 458817 CDS YP_001673544.1 167623250 5905311 1596994..1597353 1 NC_010334.1 PFAM: Variant SH3 domain protein; KEGG: bca:BCE_3400 SH3 domain protein; SH3 domain-containing protein 1597353 5905311 Shal_1317 Shewanella halifaxensis HAW-EB4 SH3 domain-containing protein YP_001673544.1 1596994 D 458817 CDS YP_001673545.1 167623251 5905312 1597498..1598016 1 NC_010334.1 hypothetical protein 1598016 5905312 Shal_1318 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673545.1 1597498 D 458817 CDS YP_001673546.1 167623252 5905289 complement(1598152..1599168) 1 NC_010334.1 TIGRFAM: phage portal protein, PBSX family; PFAM: portal protein; KEGG: sbl:Sbal_1281 phage portal protein, PBSX family; PBSX family phage portal protein 1599168 5905289 Shal_1319 Shewanella halifaxensis HAW-EB4 PBSX family phage portal protein YP_001673546.1 1598152 R 458817 CDS YP_001673547.1 167623253 5905290 complement(1599150..1601003) 1 NC_010334.1 PFAM: protein of unknown function DUF264; putative terminase ATPase subunit; KEGG: shm:Shewmr7_0720 protein of unknown function DUF264; hypothetical protein 1601003 5905290 Shal_1320 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673547.1 1599150 R 458817 CDS YP_001673548.1 167623254 5905341 1601163..1602059 1 NC_010334.1 PFAM: capsid scaffolding; KEGG: shw:Sputw3181_2899 phage capsid scaffolding; capsid scaffolding 1602059 5905341 Shal_1321 Shewanella halifaxensis HAW-EB4 capsid scaffolding YP_001673548.1 1601163 D 458817 CDS YP_001673549.1 167623255 5905342 1602109..1603149 1 NC_010334.1 TIGRFAM: phage major capsid protein, P2 family; PFAM: major capsid protein P2; KEGG: shm:Shewmr7_0722 phage major capsid protein, P2 family; P2 family phage major capsid protein 1603149 5905342 Shal_1322 Shewanella halifaxensis HAW-EB4 P2 family phage major capsid protein YP_001673549.1 1602109 D 458817 CDS YP_001673550.1 167623256 5905329 1603230..1603790 1 NC_010334.1 KEGG: sbl:Sbal_1285 hypothetical protein; hypothetical protein 1603790 5905329 Shal_1323 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673550.1 1603230 D 458817 CDS YP_001673551.1 167623257 5905330 1603829..1604503 1 NC_010334.1 PFAM: small terminase subunit; KEGG: shm:Shewmr7_0724 putative phage gene; small terminase subunit 1604503 5905330 Shal_1324 Shewanella halifaxensis HAW-EB4 small terminase subunit YP_001673551.1 1603829 D 458817 CDS YP_001673552.1 167623258 5905432 1604625..1605074 1 NC_010334.1 KEGG: shm:Shewmr7_0725 hypothetical protein; hypothetical protein 1605074 5905432 Shal_1325 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673552.1 1604625 D 458817 CDS YP_001673553.1 167623259 5905514 1605071..1605571 1 NC_010334.1 KEGG: shw:Sputw3181_2894 hypothetical protein; hypothetical protein 1605571 5905514 Shal_1326 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673553.1 1605071 D 458817 CDS YP_001673554.1 167623260 5905515 1605568..1606221 1 NC_010334.1 KEGG: shw:Sputw3181_2893 hypothetical protein; hypothetical protein 1606221 5905515 Shal_1327 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673554.1 1605568 D 458817 CDS YP_001673555.1 167623261 5905672 1606235..1607353 1 NC_010334.1 KEGG: sbl:Sbal_1290 hypothetical protein; hypothetical protein 1607353 5905672 Shal_1328 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673555.1 1606235 D 458817 CDS YP_001673556.1 167623262 5905673 1607378..1607827 1 NC_010334.1 KEGG: shm:Shewmr7_0729 prophage PSPPH06, putative tail tube protein; prophage PSPPH06 tail tube protein 1607827 5905673 Shal_1329 Shewanella halifaxensis HAW-EB4 prophage PSPPH06 tail tube protein YP_001673556.1 1607378 D 458817 CDS YP_001673557.1 167623263 5905619 1607841..1608047 1 NC_010334.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: shw:Sputw3181_2890 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 1608047 5905619 Shal_1330 Shewanella halifaxensis HAW-EB4 TraR/DksA family transcriptional regulator YP_001673557.1 1607841 D 458817 CDS YP_001673558.1 167623264 5905620 1608044..1608592 1 NC_010334.1 PFAM: protein of unknown function DUF847; KEGG: shw:Sputw3181_2889 protein of unknown function DUF847; hypothetical protein 1608592 5905620 Shal_1331 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673558.1 1608044 D 458817 CDS YP_001673559.1 167623265 5905782 1608602..1608991 1 NC_010334.1 KEGG: plt:Plut_0821 hypothetical protein; hypothetical protein 1608991 5905782 Shal_1332 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673559.1 1608602 D 458817 CDS YP_001673560.1 167623266 5905783 1608988..1609254 1 NC_010334.1 KEGG: shw:Sputw3181_2887 hypothetical protein; hypothetical protein 1609254 5905783 Shal_1333 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673560.1 1608988 D 458817 CDS YP_001673561.1 167623267 5905768 1609251..1609514 1 NC_010334.1 KEGG: shm:Shewmr7_0735 hypothetical protein; hypothetical protein 1609514 5905768 Shal_1334 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673561.1 1609251 D 458817 CDS YP_001673562.1 167623268 5905769 1609747..1611501 1 NC_010334.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: shm:Shewmr7_0736 phage tail tape measure protein, TP901 family; TP901 family phage tail tape measure protein 1611501 5905769 Shal_1335 Shewanella halifaxensis HAW-EB4 TP901 family phage tail tape measure protein YP_001673562.1 1609747 D 458817 CDS YP_001673563.1 167623269 5905727 1611498..1611851 1 NC_010334.1 KEGG: shm:Shewmr7_0737 hypothetical protein; hypothetical protein 1611851 5905727 Shal_1336 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673563.1 1611498 D 458817 CDS YP_001673564.1 167623270 5905607 1611844..1613040 1 NC_010334.1 KEGG: sbl:Sbal_1300 putative bacteriophage protein; putative bacteriophage protein 1613040 5905607 Shal_1337 Shewanella halifaxensis HAW-EB4 putative bacteriophage protein YP_001673564.1 1611844 D 458817 CDS YP_001673565.1 167623271 5905608 1613041..1613703 1 NC_010334.1 KEGG: shm:Shewmr7_0739 hypothetical protein; hypothetical protein 1613703 5905608 Shal_1338 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673565.1 1613041 D 458817 CDS YP_001673566.1 167623272 5903316 1616519..1617016 1 NC_010334.1 KEGG: sbl:Sbal_1303 hypothetical protein; hypothetical protein 1617016 5903316 Shal_1340 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673566.1 1616519 D 458817 CDS YP_001673567.1 167623273 5905852 1617016..1617705 1 NC_010334.1 KEGG: sbl:Sbal_1304 hypothetical protein; hypothetical protein 1617705 5905852 Shal_1341 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673567.1 1617016 D 458817 CDS YP_001673568.1 167623274 5905853 1617718..1618392 1 NC_010334.1 KEGG: shm:Shewmr7_0743 hypothetical protein; hypothetical protein 1618392 5905853 Shal_1342 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673568.1 1617718 D 458817 CDS YP_001673569.1 167623275 5906447 1618416..1618613 1 NC_010334.1 KEGG: shm:Shewmr7_0744 hypothetical protein; hypothetical protein 1618613 5906447 Shal_1343 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673569.1 1618416 D 458817 CDS YP_001673570.1 167623276 5906448 1618761..1619126 1 NC_010334.1 hypothetical protein 1619126 5906448 Shal_1344 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673570.1 1618761 D 458817 CDS YP_001673571.1 167623277 5906681 complement(1620316..1620810) 1 NC_010334.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1620810 smpB 5906681 smpB Shewanella halifaxensis HAW-EB4 SsrA-binding protein YP_001673571.1 1620316 R 458817 CDS YP_001673572.1 167623278 5905868 1621003..1621434 1 NC_010334.1 PFAM: cyclase/dehydrase; KEGG: slo:Shew_1269 cyclase/dehydrase; cyclase/dehydrase 1621434 5905868 Shal_1346 Shewanella halifaxensis HAW-EB4 cyclase/dehydrase YP_001673572.1 1621003 D 458817 CDS YP_001673573.1 167623279 5906851 1621431..1621763 1 NC_010334.1 PFAM: protein of unknown function UPF0125; KEGG: slo:Shew_1270 protein of unknown function UPF0125; hypothetical protein 1621763 5906851 Shal_1347 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673573.1 1621431 D 458817 CDS YP_001673574.1 167623280 5906777 complement(1621862..1622356) 1 NC_010334.1 PFAM: SmpA/OmlA domain protein; KEGG: slo:Shew_1271 SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein 1622356 5906777 Shal_1348 Shewanella halifaxensis HAW-EB4 SmpA/OmlA domain-containing protein YP_001673574.1 1621862 R 458817 CDS YP_001673575.1 167623281 5906778 1622862..1623668 1 NC_010334.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: slo:Shew_1272 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 1623668 5906778 Shal_1349 Shewanella halifaxensis HAW-EB4 uroporphyrin-III C/tetrapyrrole methyltransferase YP_001673575.1 1622862 D 458817 CDS YP_001673576.1 167623282 5906716 1623746..1623958 1 NC_010334.1 KEGG: slo:Shew_1273 hypothetical protein; hypothetical protein 1623958 5906716 Shal_1350 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673576.1 1623746 D 458817 CDS YP_001673577.1 167623283 5906717 1623942..1625750 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shn:Shewana3_2946 diguanylate cyclase; diguanylate cyclase 1625750 5906717 Shal_1351 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001673577.1 1623942 D 458817 CDS YP_001673578.1 167623284 5906707 1626595..1628232 1 NC_010334.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 1628232 5906707 Shal_1352 Shewanella halifaxensis HAW-EB4 malate synthase YP_001673578.1 1626595 D 458817 CDS YP_001673579.1 167623285 5906708 1628611..1630089 1 NC_010334.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: slo:Shew_1277 putative signal transduction protein; putative signal transduction protein 1630089 5906708 Shal_1353 Shewanella halifaxensis HAW-EB4 putative signal transduction protein YP_001673579.1 1628611 D 458817 CDS YP_001673580.1 167623286 5906666 complement(1630264..1630755) 1 NC_010334.1 KEGG: shm:Shewmr7_1280 hypothetical protein; hypothetical protein 1630755 5906666 Shal_1354 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673580.1 1630264 R 458817 CDS YP_001673581.1 167623287 5906667 complement(1630815..1631639) 1 NC_010334.1 PFAM: protein of unknown function DUF980; KEGG: son:SO_3335 hypothetical protein; hypothetical protein 1631639 5906667 Shal_1355 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673581.1 1630815 R 458817 CDS YP_001673582.1 167623288 5906505 complement(1631904..1632350) 1 NC_010334.1 KEGG: slo:Shew_1280 transcriptional regulator, CopG family; CopG family transcriptional regulator 1632350 5906505 Shal_1356 Shewanella halifaxensis HAW-EB4 CopG family transcriptional regulator YP_001673582.1 1631904 R 458817 CDS YP_001673583.1 167623289 5906464 complement(1632310..1633053) 1 NC_010334.1 KEGG: slo:Shew_1281 hypothetical protein; hypothetical protein 1633053 5906464 Shal_1357 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673583.1 1632310 R 458817 CDS YP_001673584.1 167623290 5906465 1633661..1633894 1 NC_010334.1 KEGG: slo:Shew_1282 hypothetical protein; hypothetical protein 1633894 5906465 Shal_1358 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673584.1 1633661 D 458817 CDS YP_001673585.1 167623291 5906299 1634073..1634375 1 NC_010334.1 KEGG: slo:Shew_1283 NrfJ-related protein; NrfJ-like protein 1634375 5906299 Shal_1359 Shewanella halifaxensis HAW-EB4 NrfJ-like protein YP_001673585.1 1634073 D 458817 CDS YP_001673586.1 167623292 5906300 1634543..1635052 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_1284 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1635052 5906300 Shal_1360 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001673586.1 1634543 D 458817 CDS YP_001673587.1 167623293 5906101 1635144..1635683 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sbm:Shew185_3014 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1635683 5906101 Shal_1361 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001673587.1 1635144 D 458817 CDS YP_001673588.1 167623294 5906102 complement(1635786..1637552) 1 NC_010334.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: slo:Shew_1285 5'-nucleotidase; 5'-nucleotidase 1637552 5906102 Shal_1362 Shewanella halifaxensis HAW-EB4 5'-nucleotidase YP_001673588.1 1635786 R 458817 CDS YP_001673589.1 167623295 5906081 complement(1637763..1638833) 1 NC_010334.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: son:SO_3316 hypothetical protein; hypothetical protein 1638833 5906081 Shal_1363 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673589.1 1637763 R 458817 CDS YP_001673590.1 167623296 5906082 1638993..1640114 1 NC_010334.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1640114 5906082 Shal_1364 Shewanella halifaxensis HAW-EB4 ribosomal RNA large subunit methyltransferase N YP_001673590.1 1638993 D 458817 CDS YP_001673591.1 167623297 5905872 1640135..1640935 1 NC_010334.1 KEGG: slo:Shew_1288 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1640935 5905872 Shal_1365 Shewanella halifaxensis HAW-EB4 type IV pilus biogenesis/stability protein PilW YP_001673591.1 1640135 D 458817 CDS YP_001673592.1 167623298 5905873 1640935..1641918 1 NC_010334.1 KEGG: sfr:Sfri_1115 hypothetical protein; hypothetical protein 1641918 5905873 Shal_1366 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673592.1 1640935 D 458817 CDS YP_001673593.1 167623299 5905775 1641941..1643056 1 NC_010334.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1643056 ispG 5905775 ispG Shewanella halifaxensis HAW-EB4 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_001673593.1 1641941 D 458817 CDS YP_001673594.1 167623300 5907016 1643194..1644468 1 NC_010334.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1644468 hisS 5907016 hisS Shewanella halifaxensis HAW-EB4 histidyl-tRNA synthetase YP_001673594.1 1643194 D 458817 CDS YP_001673595.1 167623301 5907017 1644483..1645103 1 NC_010334.1 KEGG: slo:Shew_1292 tetratricopeptide TPR_4; hypothetical protein 1645103 5907017 Shal_1369 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673595.1 1644483 D 458817 CDS YP_001673596.1 167623302 5906951 1645115..1646302 1 NC_010334.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1646302 5906951 Shal_1370 Shewanella halifaxensis HAW-EB4 outer membrane protein assembly complex subunit YfgL YP_001673596.1 1645115 D 458817 CDS YP_001673597.1 167623303 5906952 1646388..1647860 1 NC_010334.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1647860 engA 5906952 engA Shewanella halifaxensis HAW-EB4 GTP-binding protein EngA YP_001673597.1 1646388 D 458817 CDS YP_001673598.1 167623304 5906893 1648363..1648944 1 NC_010334.1 KEGG: slo:Shew_1147 hypothetical protein; hypothetical protein 1648944 5906893 Shal_1372 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673598.1 1648363 D 458817 CDS YP_001673599.1 167623305 5906894 1649627..1651075 1 NC_010334.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: nma:NMA1126 putative transmembrane transport protein; uracil-xanthine permease 1651075 5906894 Shal_1373 Shewanella halifaxensis HAW-EB4 uracil-xanthine permease YP_001673599.1 1649627 D 458817 CDS YP_001673600.1 167623306 5906574 complement(1651426..1653051) 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRB0365 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1653051 5906574 Shal_1374 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis sensory transducer YP_001673600.1 1651426 R 458817 CDS YP_001673601.1 167623307 5906575 complement(1653551..1654888) 1 NC_010334.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1654888 xseA 5906575 xseA Shewanella halifaxensis HAW-EB4 exodeoxyribonuclease VII large subunit YP_001673601.1 1653551 R 458817 CDS YP_001673602.1 167623308 5905736 1655008..1656480 1 NC_010334.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1656480 5905736 Shal_1376 Shewanella halifaxensis HAW-EB4 inosine 5'-monophosphate dehydrogenase YP_001673602.1 1655008 D 458817 CDS YP_001673603.1 167623309 5905737 1656605..1658182 1 NC_010334.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1658182 guaA 5905737 guaA Shewanella halifaxensis HAW-EB4 GMP synthase YP_001673603.1 1656605 D 458817 CDS YP_001673604.1 167623310 5906854 1658751..1659242 1 NC_010334.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: shm:Shewmr7_1307 CMP/dCMP deaminase, zinc-binding protein; zinc-binding CMP/dCMP deaminase 1659242 5906854 Shal_1378 Shewanella halifaxensis HAW-EB4 zinc-binding CMP/dCMP deaminase YP_001673604.1 1658751 D 458817 CDS YP_001673605.1 167623311 5906549 complement(1659565..1660992) 1 NC_010334.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 1660992 5906549 Shal_1379 Shewanella halifaxensis HAW-EB4 putative transglycosylase YP_001673605.1 1659565 R 458817 CDS YP_001673606.1 167623312 5906550 1661297..1665178 1 NC_010334.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1665178 5906550 Shal_1380 Shewanella halifaxensis HAW-EB4 phosphoribosylformylglycinamidine synthase YP_001673606.1 1661297 D 458817 CDS YP_001673607.1 167623313 5906482 1666385..1667941 1 NC_010334.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: slo:Shew_1302 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 1667941 5906482 Shal_1381 Shewanella halifaxensis HAW-EB4 cytochrome bd ubiquinol oxidase subunit I YP_001673607.1 1666385 D 458817 CDS YP_001673608.1 167623314 5906483 1667957..1669096 1 NC_010334.1 KEGG: slo:Shew_1303 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 1669096 5906483 Shal_1382 Shewanella halifaxensis HAW-EB4 cytochrome d ubiquinol oxidase subunit II YP_001673608.1 1667957 D 458817 CDS YP_001673609.1 167623315 5906449 1669112..1669228 1 NC_010334.1 TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: slo:Shew_1304 cyd operon protein YbgT; cyd operon protein YbgT 1669228 5906449 Shal_1383 Shewanella halifaxensis HAW-EB4 cyd operon protein YbgT YP_001673609.1 1669112 D 458817 CDS YP_001673610.1 167623316 5906450 complement(1669731..1670303) 1 NC_010334.1 hypothetical protein 1670303 5906450 Shal_1384 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673610.1 1669731 R 458817 CDS YP_001673611.1 167623317 5906329 complement(1670528..1672531) 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: slo:Shew_1310 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1672531 5906329 Shal_1385 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis sensory transducer YP_001673611.1 1670528 R 458817 CDS YP_001673612.1 167623318 5906274 complement(1673013..1676105) 1 NC_010334.1 PFAM: acriflavin resistance protein; KEGG: slo:Shew_1311 acriflavin resistance protein; acriflavin resistance protein 1676105 5906274 Shal_1387 Shewanella halifaxensis HAW-EB4 acriflavin resistance protein YP_001673612.1 1673013 R 458817 CDS YP_001673613.1 167623319 5906275 complement(1676111..1677223) 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_1312 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1677223 5906275 Shal_1388 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001673613.1 1676111 R 458817 CDS YP_001673614.1 167623320 5906198 1677418..1678032 1 NC_010334.1 PFAM: regulatory protein TetR; KEGG: she:Shewmr4_1247 transcriptional regulator, TetR family; TetR family transcriptional regulator 1678032 5906198 Shal_1389 Shewanella halifaxensis HAW-EB4 TetR family transcriptional regulator YP_001673614.1 1677418 D 458817 CDS YP_001673615.1 167623321 5905999 complement(1678101..1678676) 1 NC_010334.1 KEGG: sbm:Shew185_2984 hypothetical protein; hypothetical protein 1678676 5905999 Shal_1390 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673615.1 1678101 R 458817 CDS YP_001673616.1 167623322 5906000 complement(1678708..1679187) 1 NC_010334.1 KEGG: slo:Shew_1316 hypothetical protein; hypothetical protein 1679187 5906000 Shal_1391 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673616.1 1678708 R 458817 CDS YP_001673617.1 167623323 5906024 complement(1679298..1681727) 1 NC_010334.1 KEGG: shw:Sputw3181_1377 protein of unknown function DUF115; hypothetical protein 1681727 5906024 Shal_1392 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673617.1 1679298 R 458817 CDS YP_001673618.1 167623324 5906025 1682056..1683057 1 NC_010334.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: spc:Sputcn32_2629 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 1683057 5906025 Shal_1393 Shewanella halifaxensis HAW-EB4 polysaccharide biosynthesis protein CapD YP_001673618.1 1682056 D 458817 CDS YP_001673619.1 167623325 5905974 1683054..1684202 1 NC_010334.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: shw:Sputw3181_1379 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1684202 5905974 Shal_1394 Shewanella halifaxensis HAW-EB4 DegT/DnrJ/EryC1/StrS aminotransferase YP_001673619.1 1683054 D 458817 CDS YP_001673620.1 167623326 5905975 complement(1684245..1685453) 1 NC_010334.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: son:SO_3269 cytidylyltransferase domain protein; acylneuraminate cytidylyltransferase 1685453 5905975 Shal_1395 Shewanella halifaxensis HAW-EB4 acylneuraminate cytidylyltransferase YP_001673620.1 1684245 R 458817 CDS YP_001673621.1 167623327 5904791 complement(1685457..1687406) 1 NC_010334.1 PFAM: glycoside hydrolase family 57; KEGG: son:SO_3268 alpha amylase domain protein; glycoside hydrolase family protein 1687406 5904791 Shal_1396 Shewanella halifaxensis HAW-EB4 glycoside hydrolase family protein YP_001673621.1 1685457 R 458817 CDS YP_001673622.1 167623328 5904792 1687760..1688740 1 NC_010334.1 KEGG: gme:Gmet_0454 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase 1688740 5904792 Shal_1397 Shewanella halifaxensis HAW-EB4 acylneuraminate cytidylyltransferase YP_001673622.1 1687760 D 458817 CDS YP_001673623.1 167623329 5903260 1688858..1689781 1 NC_010334.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_0453 hypothetical protein; type 12 methyltransferase 1689781 5903260 Shal_1398 Shewanella halifaxensis HAW-EB4 type 12 methyltransferase YP_001673623.1 1688858 D 458817 CDS YP_001673624.1 167623330 5903261 1689813..1691024 1 NC_010334.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sbl:Sbal_2962 methyltransferase type 11; type 11 methyltransferase 1691024 5903261 Shal_1399 Shewanella halifaxensis HAW-EB4 type 11 methyltransferase YP_001673624.1 1689813 D 458817 CDS YP_001673625.1 167623331 5903709 1691027..1692805 1 NC_010334.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: sbl:Sbal_2961 transketolase, central region; transketolase central region 1692805 5903709 Shal_1400 Shewanella halifaxensis HAW-EB4 transketolase central region YP_001673625.1 1691027 D 458817 CDS YP_001673626.1 167623332 5902680 1692805..1693557 1 NC_010334.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sbl:Sbal_2960 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1693557 5902680 Shal_1401 Shewanella halifaxensis HAW-EB4 short-chain dehydrogenase/reductase SDR YP_001673626.1 1692805 D 458817 CDS YP_001673627.1 167623333 5902681 1693561..1694793 1 NC_010334.1 PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; KEGG: sbl:Sbal_2959 phosphoribosylglycinamide synthetase; hypothetical protein 1694793 5902681 Shal_1402 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673627.1 1693561 D 458817 CDS YP_001673628.1 167623334 5906218 complement(1694900..1695760) 1 NC_010334.1 PFAM: N-acetylneuraminic acid synthase domain; KEGG: son:SO_3261 polysaccharide biosynthesis related-protein; N-acetylneuraminic acid synthase domain-containing protein 1695760 5906218 Shal_1403 Shewanella halifaxensis HAW-EB4 N-acetylneuraminic acid synthase domain-containing protein YP_001673628.1 1694900 R 458817 CDS YP_001673629.1 167623335 5906219 1696310..1697062 1 NC_010334.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pin:Ping_2637 methyltransferase type 12; type 11 methyltransferase 1697062 5906219 Shal_1404 Shewanella halifaxensis HAW-EB4 type 11 methyltransferase YP_001673629.1 1696310 D 458817 CDS YP_001673630.1 167623336 5906443 1697441..1698706 1 NC_010334.1 PFAM: sodium:dicarboxylate symporter; KEGG: vfi:VF0647 proton/sodium-glutamate symport protein; sodium:dicarboxylate symporter 1698706 5906443 Shal_1405 Shewanella halifaxensis HAW-EB4 sodium:dicarboxylate symporter YP_001673630.1 1697441 D 458817 CDS YP_001673631.1 167623337 5906444 complement(1698803..1700161) 1 NC_010334.1 PFAM: beta-lactamase domain protein; KEGG: rba:RB11482 alkyl sulfatase or beta-lactamase; beta-lactamase domain-containing protein 1700161 5906444 Shal_1406 Shewanella halifaxensis HAW-EB4 beta-lactamase domain-containing protein YP_001673631.1 1698803 R 458817 CDS YP_001673632.1 167623338 5904980 complement(1700241..1701074) 1 NC_010334.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cps:CPS_4655 transcriptional regulator, AraC family; AraC family transcriptional regulator 1701074 5904980 Shal_1407 Shewanella halifaxensis HAW-EB4 AraC family transcriptional regulator YP_001673632.1 1700241 R 458817 CDS YP_001673633.1 167623339 5904981 1701957..1703189 1 NC_010334.1 KEGG: shn:Shewana3_0711 response regulator receiver protein; TIGRFAM: hydrogenase, Fe-only; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; hydrogenase large subunit domain protein; hydrogenase, Fe-only 1703189 5904981 Shal_1408 Shewanella halifaxensis HAW-EB4 hydrogenase, Fe-only YP_001673633.1 1701957 D 458817 CDS YP_001673634.1 167623340 5905363 1703204..1703524 1 NC_010334.1 PFAM: iron hydrogenase small subunit; KEGG: shn:Shewana3_0710 iron hydrogenase, small subunit; iron hydrogenase small subunit 1703524 5905363 Shal_1409 Shewanella halifaxensis HAW-EB4 iron hydrogenase small subunit YP_001673634.1 1703204 D 458817 CDS YP_001673635.1 167623341 5905364 1703538..1704218 1 NC_010334.1 KEGG: shn:Shewana3_0709 formate dehydrogenase, putative; formate dehydrogenase 1704218 5905364 Shal_1410 Shewanella halifaxensis HAW-EB4 formate dehydrogenase YP_001673635.1 1703538 D 458817 CDS YP_001673636.1 167623342 5905375 1704310..1705752 1 NC_010334.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 1705752 thiH 5905375 thiH Shewanella halifaxensis HAW-EB4 thiamine biosynthesis protein ThiH YP_001673636.1 1704310 D 458817 CDS YP_001673637.1 167623343 5904743 1705792..1706406 1 NC_010334.1 KEGG: son:SO_3924 hypothetical protein; hypothetical protein 1706406 5904743 Shal_1412 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673637.1 1705792 D 458817 CDS YP_001673638.1 167623344 5904744 1706418..1707440 1 NC_010334.1 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 1707440 5904744 Shal_1413 Shewanella halifaxensis HAW-EB4 biotin synthase YP_001673638.1 1706418 D 458817 CDS YP_001673639.1 167623345 5906239 1707442..1708683 1 NC_010334.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: shn:Shewana3_0705 small GTP-binding protein; small GTP-binding protein 1708683 5906239 Shal_1414 Shewanella halifaxensis HAW-EB4 small GTP-binding protein YP_001673639.1 1707442 D 458817 CDS YP_001673640.1 167623346 5906240 1709701..1710696 1 NC_010334.1 KEGG: pin:Ping_3114 beta-lactamase domain protein; beta-lactamase domain-containing protein 1710696 5906240 Shal_1415 Shewanella halifaxensis HAW-EB4 beta-lactamase domain-containing protein YP_001673640.1 1709701 D 458817 CDS YP_001673641.1 167623347 5905488 1710689..1712155 1 NC_010334.1 KEGG: pin:Ping_3113 hypothetical protein; hypothetical protein 1712155 5905488 Shal_1416 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673641.1 1710689 D 458817 CDS YP_001673642.1 167623348 5905489 1712142..1714655 1 NC_010334.1 PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: pin:Ping_3112 ATP-dependent RNA helicase, DEAD box family protein; helicase domain-containing protein 1714655 5905489 Shal_1417 Shewanella halifaxensis HAW-EB4 helicase domain-containing protein YP_001673642.1 1712142 D 458817 CDS YP_001673643.1 167623349 5906422 complement(1714965..1716086) 1 NC_010334.1 KEGG: ana:all0796 unknown protein; hypothetical protein 1716086 5906422 Shal_1418 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673643.1 1714965 R 458817 CDS YP_001673644.1 167623350 5906410 complement(1716793..1717962) 1 NC_010334.1 KEGG: slo:Shew_1337 hypothetical protein; hypothetical protein 1717962 5906410 Shal_1419 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673644.1 1716793 R 458817 CDS YP_001673645.1 167623351 5904214 1718419..1719048 1 NC_010334.1 KEGG: slo:Shew_1338 hypothetical protein; hypothetical protein 1719048 5904214 Shal_1420 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673645.1 1718419 D 458817 CDS YP_001673646.1 167623352 5904141 1719049..1719495 1 NC_010334.1 PFAM: protein of unknown function DUF400; KEGG: slo:Shew_1339 protein of unknown function DUF400; hypothetical protein 1719495 5904141 Shal_1421 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673646.1 1719049 D 458817 CDS YP_001673647.1 167623353 5904142 complement(1720190..1720615) 1 NC_010334.1 PFAM: FlgN family protein; KEGG: slo:Shew_1340 FlgN family protein; FlgN family protein 1720615 5904142 Shal_1422 Shewanella halifaxensis HAW-EB4 FlgN family protein YP_001673647.1 1720190 R 458817 CDS YP_001673648.1 167623354 5904134 complement(1720691..1721005) 1 NC_010334.1 PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: sbm:Shew185_2966 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM 1721005 5904134 Shal_1423 Shewanella halifaxensis HAW-EB4 anti-sigma-28 factor FlgM YP_001673648.1 1720691 R 458817 CDS YP_001673649.1 167623355 5904135 complement(1721153..1721926) 1 NC_010334.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1721926 flgA 5904135 flgA Shewanella halifaxensis HAW-EB4 flagellar basal body P-ring biosynthesis protein FlgA YP_001673649.1 1721153 R 458817 CDS YP_001673650.1 167623356 5902858 1722147..1723067 1 NC_010334.1 PFAM: response regulator receiver; CheW domain protein; KEGG: sfr:Sfri_1159 response regulator receiver modulated CheW protein; response regulator receiver modulated CheW protein 1723067 5902858 Shal_1425 Shewanella halifaxensis HAW-EB4 response regulator receiver modulated CheW protein YP_001673650.1 1722147 D 458817 CDS YP_001673651.1 167623357 5902859 1723208..1724041 1 NC_010334.1 PFAM: MCP methyltransferase CheR-type; KEGG: shm:Shewmr7_1328 MCP methyltransferase, CheR-type; CheR-type MCP methyltransferase 1724041 5902859 Shal_1426 Shewanella halifaxensis HAW-EB4 CheR-type MCP methyltransferase YP_001673651.1 1723208 D 458817 CDS YP_001673652.1 167623358 5904203 1724217..1724615 1 NC_010334.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 1724615 flgB 5904203 flgB Shewanella halifaxensis HAW-EB4 flagellar basal body rod protein FlgB YP_001673652.1 1724217 D 458817 CDS YP_001673653.1 167623359 5904204 1724618..1725034 1 NC_010334.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1725034 flgC 5904204 flgC Shewanella halifaxensis HAW-EB4 flagellar basal body rod protein FlgC YP_001673653.1 1724618 D 458817 CDS YP_001673654.1 167623360 5903809 1725060..1725863 1 NC_010334.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1725863 flgD 5903809 flgD Shewanella halifaxensis HAW-EB4 flagellar basal body rod modification protein YP_001673654.1 1725060 D 458817 CDS YP_001673655.1 167623361 5903810 1725952..1727313 1 NC_010334.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1727313 flgE 5903810 flgE Shewanella halifaxensis HAW-EB4 flagellar hook protein FlgE YP_001673655.1 1725952 D 458817 CDS YP_001673656.1 167623362 5903790 1727770..1728513 1 NC_010334.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1728513 flgF 5903790 flgF Shewanella halifaxensis HAW-EB4 flagellar basal body rod protein FlgF YP_001673656.1 1727770 D 458817 CDS YP_001673657.1 167623363 5903958 1728524..1729312 1 NC_010334.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1729312 flgG 5903958 flgG Shewanella halifaxensis HAW-EB4 flagellar basal body rod protein FlgG YP_001673657.1 1728524 D 458817 CDS YP_001673658.1 167623364 5903959 1729335..1730009 1 NC_010334.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 1730009 flgH 5903959 flgH Shewanella halifaxensis HAW-EB4 flagellar basal body L-ring protein YP_001673658.1 1729335 D 458817 CDS YP_001673659.1 167623365 5904143 1730044..1731138 1 NC_010334.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1731138 flgI 5904143 flgI Shewanella halifaxensis HAW-EB4 flagellar basal body P-ring protein YP_001673659.1 1730044 D 458817 CDS YP_001673660.1 167623366 5904144 1731167..1732273 1 NC_010334.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1732273 flgJ 5904144 flgJ Shewanella halifaxensis HAW-EB4 flagellar rod assembly protein/muramidase FlgJ YP_001673660.1 1731167 D 458817 CDS YP_001673661.1 167623367 5903788 1732317..1734236 1 NC_010334.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: slo:Shew_1354 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 1734236 5903788 Shal_1436 Shewanella halifaxensis HAW-EB4 flagellar hook-associated protein FlgK YP_001673661.1 1732317 D 458817 CDS YP_001673662.1 167623368 5903789 1734300..1735490 1 NC_010334.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 1735490 flgL 5903789 flgL Shewanella halifaxensis HAW-EB4 flagellar hook-associated protein FlgL YP_001673662.1 1734300 D 458817 CDS YP_001673663.1 167623369 5905698 1735585..1736406 1 NC_010334.1 PFAM: flagellin domain protein; KEGG: sdn:Sden_1314 flagellin-like protein; flagellin domain-containing protein 1736406 5905698 Shal_1438 Shewanella halifaxensis HAW-EB4 flagellin domain-containing protein YP_001673663.1 1735585 D 458817 CDS YP_001673664.1 167623370 5905699 1736714..1737532 1 NC_010334.1 PFAM: flagellin domain protein; KEGG: sdn:Sden_1314 flagellin-like protein; flagellin domain-containing protein 1737532 5905699 Shal_1439 Shewanella halifaxensis HAW-EB4 flagellin domain-containing protein YP_001673664.1 1736714 D 458817 CDS YP_001673665.1 167623371 5906152 1737674..1738060 1 NC_010334.1 PFAM: flagellar protein FlaG protein; KEGG: slo:Shew_1358 flagellar protein FlaG protein; flagellar protein FlaG protein 1738060 5906152 Shal_1440 Shewanella halifaxensis HAW-EB4 flagellar protein FlaG protein YP_001673665.1 1737674 D 458817 CDS YP_001673666.1 167623372 5906153 1738103..1739467 1 NC_010334.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: slo:Shew_1359 flagellar hook-associated 2 domain protein; flagellar hook-associated 2 domain-containing protein 1739467 5906153 Shal_1441 Shewanella halifaxensis HAW-EB4 flagellar hook-associated 2 domain-containing protein YP_001673666.1 1738103 D 458817 CDS YP_001673667.1 167623373 5906188 1739499..1739819 1 NC_010334.1 KEGG: slo:Shew_1360 hypothetical protein; hypothetical protein 1739819 5906188 Shal_1442 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673667.1 1739499 D 458817 CDS YP_001673668.1 167623374 5903932 1739826..1740236 1 NC_010334.1 flagellin specific chaperone; flagellar protein FliS 1740236 fliS 5903932 fliS Shewanella halifaxensis HAW-EB4 flagellar protein FliS YP_001673668.1 1739826 D 458817 CDS YP_001673669.1 167623375 5903933 1740519..1741952 1 NC_010334.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: slo:Shew_1362 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 1741952 5903933 Shal_1444 Shewanella halifaxensis HAW-EB4 sigma-54 dependent trancsriptional regulator YP_001673669.1 1740519 D 458817 CDS YP_001673670.1 167623376 5903928 1742467..1743591 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: sbm:Shew185_2939 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor-containing signal transduction histidine kinase 1743591 5903928 Shal_1445 Shewanella halifaxensis HAW-EB4 PAS/PAC sensor-containing signal transduction histidine kinase YP_001673670.1 1742467 D 458817 CDS YP_001673671.1 167623377 5903929 1743584..1744936 1 NC_010334.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: sfr:Sfri_1180 two component, sigma54 specific, transcriptional regulator, fis family protein; Fis family two component sigma54 specific transcriptional regulator 1744936 5903929 Shal_1446 Shewanella halifaxensis HAW-EB4 Fis family two component sigma54 specific transcriptional regulator YP_001673671.1 1743584 D 458817 CDS YP_001673672.1 167623378 5903923 1745473..1745805 1 NC_010334.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: sbl:Sbal_2927 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE 1745805 5903923 Shal_1447 Shewanella halifaxensis HAW-EB4 flagellar hook-basal body complex subunit FliE YP_001673672.1 1745473 D 458817 CDS YP_001673673.1 167623379 5903924 1745848..1747548 1 NC_010334.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1747548 fliF 5903924 fliF Shewanella halifaxensis HAW-EB4 flagellar MS-ring protein YP_001673673.1 1745848 D 458817 CDS YP_001673674.1 167623380 5903704 1747538..1748584 1 NC_010334.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1748584 fliG 5903704 fliG Shewanella halifaxensis HAW-EB4 flagellar motor switch protein G YP_001673674.1 1747538 D 458817 CDS YP_001673675.1 167623381 5903705 1748584..1749567 1 NC_010334.1 PFAM: flagellar assembly protein FliH; KEGG: shn:Shewana3_1344 flagellar assembly protein FliH; flagellar assembly protein FliH 1749567 5903705 Shal_1450 Shewanella halifaxensis HAW-EB4 flagellar assembly protein FliH YP_001673675.1 1748584 D 458817 CDS YP_001673676.1 167623382 5904047 1749536..1750876 1 NC_010334.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1750876 fliI 5904047 fliI Shewanella halifaxensis HAW-EB4 flagellum-specific ATP synthase YP_001673676.1 1749536 D 458817 CDS YP_001673677.1 167623383 5904048 1750952..1751398 1 NC_010334.1 TIGRFAM: flagellar export protein FliJ; KEGG: son:SO_3224 flagellar protein FliJ; flagellar export protein FliJ 1751398 5904048 Shal_1452 Shewanella halifaxensis HAW-EB4 flagellar export protein FliJ YP_001673677.1 1750952 D 458817 CDS YP_001673678.1 167623384 5903758 1751674..1753185 1 NC_010334.1 PFAM: flagellar hook-length control protein; KEGG: slo:Shew_1371 flagellar hook-length control protein; flagellar hook-length control protein 1753185 5903758 Shal_1453 Shewanella halifaxensis HAW-EB4 flagellar hook-length control protein YP_001673678.1 1751674 D 458817 CDS YP_001673679.1 167623385 5903678 1753250..1753768 1 NC_010334.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1753768 fliL 5903678 fliL Shewanella halifaxensis HAW-EB4 flagellar basal body-associated protein FliL YP_001673679.1 1753250 D 458817 CDS YP_001673680.1 167623386 5903679 1753814..1754842 1 NC_010334.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1754842 fliM 5903679 fliM Shewanella halifaxensis HAW-EB4 flagellar motor switch protein FliM YP_001673680.1 1753814 D 458817 CDS YP_001673681.1 167623387 5903544 1754855..1755232 1 NC_010334.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1755232 fliN 5903544 fliN Shewanella halifaxensis HAW-EB4 flagellar motor switch protein YP_001673681.1 1754855 D 458817 CDS YP_001673682.1 167623388 5903545 1755245..1755616 1 NC_010334.1 PFAM: flagellar biosynthesis protein FliO; KEGG: slo:Shew_1375 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein FliO 1755616 5903545 Shal_1457 Shewanella halifaxensis HAW-EB4 flagellar biosynthesis protein FliO YP_001673682.1 1755245 D 458817 CDS YP_001673683.1 167623389 5903549 1755613..1756362 1 NC_010334.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1756362 fliP 5903549 fliP Shewanella halifaxensis HAW-EB4 flagellar biosynthesis protein FliP YP_001673683.1 1755613 D 458817 CDS YP_001673684.1 167623390 5903550 1756370..1756639 1 NC_010334.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: slo:Shew_1377 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 1756639 5903550 Shal_1459 Shewanella halifaxensis HAW-EB4 flagellar biosynthetic protein FliQ YP_001673684.1 1756370 D 458817 CDS YP_001673685.1 167623391 5903586 1756754..1757551 1 NC_010334.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1757551 fliR 5903586 fliR Shewanella halifaxensis HAW-EB4 flagellar biosynthesis protein FliR YP_001673685.1 1756754 D 458817 CDS YP_001673686.1 167623392 5903587 1757618..1758751 1 NC_010334.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1758751 flhB 5903587 flhB Shewanella halifaxensis HAW-EB4 flagellar biosynthesis protein FlhB YP_001673686.1 1757618 D 458817 CDS YP_001673687.1 167623393 5904825 1758900..1760999 1 NC_010334.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1760999 flhA 5904825 flhA Shewanella halifaxensis HAW-EB4 flagellar biosynthesis protein FlhA YP_001673687.1 1758900 D 458817 CDS YP_001673688.1 167623394 5904826 1761011..1762423 1 NC_010334.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1762423 flhF 5904826 flhF Shewanella halifaxensis HAW-EB4 flagellar biosynthesis regulator FlhF YP_001673688.1 1761011 D 458817 CDS YP_001673689.1 167623395 5904684 1762410..1763309 1 NC_010334.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: slo:Shew_1382 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 1763309 5904684 Shal_1464 Shewanella halifaxensis HAW-EB4 cobyrinic acid ac-diamide synthase YP_001673689.1 1762410 D 458817 CDS YP_001673690.1 167623396 5904627 1763302..1764021 1 NC_010334.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1764021 fliA 5904627 fliA Shewanella halifaxensis HAW-EB4 flagellar biosynthesis sigma factor YP_001673690.1 1763302 D 458817 CDS YP_001673691.1 167623397 5904628 1764082..1764465 1 NC_010334.1 PFAM: response regulator receiver; KEGG: slo:Shew_1384 response regulator receiver protein; response regulator receiver protein 1764465 5904628 Shal_1466 Shewanella halifaxensis HAW-EB4 response regulator receiver protein YP_001673691.1 1764082 D 458817 CDS YP_001673692.1 167623398 5904592 1764479..1765216 1 NC_010334.1 PFAM: Chemotaxis phosphatase CheZ; KEGG: saz:Sama_2278 putative chemotaxis phosphatase, CheZ; chemotaxis phosphatase CheZ 1765216 5904592 Shal_1467 Shewanella halifaxensis HAW-EB4 chemotaxis phosphatase CheZ YP_001673692.1 1764479 D 458817 CDS YP_001673693.1 167623399 5904593 1765229..1767532 1 NC_010334.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: slo:Shew_1386 CheA signal transduction histidine kinase; signal transduction histidine kinase CheA 1767532 5904593 Shal_1468 Shewanella halifaxensis HAW-EB4 signal transduction histidine kinase CheA YP_001673693.1 1765229 D 458817 CDS YP_001673694.1 167623400 5904546 1767620..1768810 1 NC_010334.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1768810 5904546 Shal_1469 Shewanella halifaxensis HAW-EB4 chemotaxis-specific methylesterase YP_001673694.1 1767620 D 458817 CDS YP_001673695.1 167623401 5904547 1768803..1769525 1 NC_010334.1 KEGG: slo:Shew_1388 hypothetical protein; hypothetical protein 1769525 5904547 Shal_1470 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673695.1 1768803 D 458817 CDS YP_001673696.1 167623402 5904230 1769625..1770416 1 NC_010334.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: slo:Shew_1389 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 1770416 5904230 Shal_1471 Shewanella halifaxensis HAW-EB4 cobyrinic acid ac-diamide synthase YP_001673696.1 1769625 D 458817 CDS YP_001673697.1 167623403 5904231 1770400..1771341 1 NC_010334.1 PFAM: CheW domain protein; KEGG: slo:Shew_1390 CheW protein; CheW protein 1771341 5904231 Shal_1472 Shewanella halifaxensis HAW-EB4 CheW protein YP_001673697.1 1770400 D 458817 CDS YP_001673698.1 167623404 5903464 1771654..1772145 1 NC_010334.1 PFAM: CheW domain protein; KEGG: slo:Shew_1391 CheW protein; CheW protein 1772145 5903464 Shal_1473 Shewanella halifaxensis HAW-EB4 CheW protein YP_001673698.1 1771654 D 458817 CDS YP_001673699.1 167623405 5903465 1772302..1772706 1 NC_010334.1 KEGG: shn:Shewana3_1368 hypothetical protein; hypothetical protein 1772706 5903465 Shal_1474 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673699.1 1772302 D 458817 CDS YP_001673700.1 167623406 5905370 complement(1773158..1773466) 1 NC_010334.1 KEGG: slo:Shew_1393 FlhB domain protein; FlhB domain-containing protein 1773466 5905370 Shal_1475 Shewanella halifaxensis HAW-EB4 FlhB domain-containing protein YP_001673700.1 1773158 R 458817 CDS YP_001673701.1 167623407 5905387 complement(1773583..1775133) 1 NC_010334.1 KEGG: son:SO_3198 hypothetical protein; hypothetical protein 1775133 5905387 Shal_1476 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673701.1 1773583 R 458817 CDS YP_001673702.1 167623408 5905388 1775519..1776289 1 NC_010334.1 PFAM: VacJ family lipoprotein; KEGG: sbl:Sbal_2897 VacJ family lipoprotein; VacJ family lipoprotein 1776289 5905388 Shal_1477 Shewanella halifaxensis HAW-EB4 VacJ family lipoprotein YP_001673702.1 1775519 D 458817 CDS YP_001673703.1 167623409 5905563 1776386..1777492 1 NC_010334.1 PFAM: response regulator receiver; KEGG: shm:Shewmr7_1379 response regulator receiver protein; response regulator receiver protein 1777492 5905563 Shal_1478 Shewanella halifaxensis HAW-EB4 response regulator receiver protein YP_001673703.1 1776386 D 458817 CDS YP_001673704.1 167623410 5905564 complement(1777479..1778117) 1 NC_010334.1 KEGG: ptr:749610 hypothetical protein LOC749610; hypothetical protein 1778117 5905564 Shal_1479 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673704.1 1777479 R 458817 CDS YP_001673705.1 167623411 5905534 1778816..1779169 1 NC_010334.1 PFAM: S23 ribosomal protein; KEGG: vfi:VF0154 hypothetical protein; S23 ribosomal protein 1779169 5905534 Shal_1480 Shewanella halifaxensis HAW-EB4 S23 ribosomal protein YP_001673705.1 1778816 D 458817 CDS YP_001673706.1 167623412 5905535 complement(1779657..1781162) 1 NC_010334.1 KEGG: sbl:Sbal_2895 amino acid/peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; amino acid/peptide transporter 1781162 5905535 Shal_1481 Shewanella halifaxensis HAW-EB4 amino acid/peptide transporter YP_001673706.1 1779657 R 458817 CDS YP_001673707.1 167623413 5905866 1781604..1782140 1 NC_010334.1 TIGRFAM: transcriptional activator RfaH; PFAM: NGN domain protein; KEGG: slo:Shew_1398 NusG antitermination factor; transcriptional acivator RfaH 1782140 5905866 Shal_1482 Shewanella halifaxensis HAW-EB4 transcriptional acivator RfaH YP_001673707.1 1781604 D 458817 CDS YP_001673708.1 167623414 5905867 1783501..1786275 1 NC_010334.1 PFAM: polysaccharide export protein; KEGG: slo:Shew_1399 polysaccharide export protein; polysaccharide export protein 1786275 5905867 Shal_1483 Shewanella halifaxensis HAW-EB4 polysaccharide export protein YP_001673708.1 1783501 D 458817 CDS YP_001673709.1 167623415 5905928 1786380..1786775 1 NC_010334.1 crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein 1786775 5905928 Shal_1484 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673709.1 1786380 D 458817 CDS YP_001673710.1 167623416 5905929 1786839..1787816 1 NC_010334.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: slo:Shew_1400 lipopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein 1787816 5905929 Shal_1485 Shewanella halifaxensis HAW-EB4 lipopolysaccharide biosynthesis protein YP_001673710.1 1786839 D 458817 CDS YP_001673711.1 167623417 5906877 1788071..1789225 1 NC_010334.1 NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase 1789225 5906877 Shal_1486 Shewanella halifaxensis HAW-EB4 dTDP-glucose-4,6-dehydratase YP_001673711.1 1788071 D 458817 CDS YP_001673712.1 167623418 5906297 1789222..1790109 1 NC_010334.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: spc:Sputcn32_2539 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1790109 5906297 Shal_1487 Shewanella halifaxensis HAW-EB4 glucose-1-phosphate thymidylyltransferase YP_001673712.1 1789222 D 458817 CDS YP_001673713.1 167623419 5906298 1790109..1790990 1 NC_010334.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pin:Ping_3463 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1790990 5906298 Shal_1488 Shewanella halifaxensis HAW-EB4 dTDP-4-dehydrorhamnose reductase YP_001673713.1 1790109 D 458817 CDS YP_001673714.1 167623420 5905970 1790995..1791549 1 NC_010334.1 KEGG: sfr:Sfri_2827 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1791549 5905970 Shal_1489 Shewanella halifaxensis HAW-EB4 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001673714.1 1790995 D 458817 CDS YP_001673715.1 167623421 5905971 1791556..1793094 1 NC_010334.1 PFAM: polysaccharide biosynthesis protein; KEGG: bfr:BF1533 hypothetical protein; polysaccharide biosynthesis protein 1793094 5905971 Shal_1490 Shewanella halifaxensis HAW-EB4 polysaccharide biosynthesis protein YP_001673715.1 1791556 D 458817 CDS YP_001673716.1 167623422 5906608 1793108..1794127 1 NC_010334.1 PFAM: glycosyl transferase family 2; KEGG: pat:Patl_3065 glycosyl transferase, family 2; glycosyl transferase family protein 1794127 5906608 Shal_1491 Shewanella halifaxensis HAW-EB4 glycosyl transferase family protein YP_001673716.1 1793108 D 458817 CDS YP_001673717.1 167623423 5906609 1794184..1795545 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: maq:Maqu_2619 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; 4Fe-4S ferredoxin 1795545 5906609 Shal_1492 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001673717.1 1794184 D 458817 CDS YP_001673718.1 167623424 5906515 1795614..1796723 1 NC_010334.1 KEGG: maq:Maqu_2618 hypothetical protein; hypothetical protein 1796723 5906515 Shal_1493 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673718.1 1795614 D 458817 CDS YP_001673719.1 167623425 5906516 1796710..1797609 1 NC_010334.1 PFAM: glycosyl transferase family 2; KEGG: tel:tlr2318 probable glycosyl transferase; glycosyl transferase family protein 1797609 5906516 Shal_1494 Shewanella halifaxensis HAW-EB4 glycosyl transferase family protein YP_001673719.1 1796710 D 458817 CDS YP_001673720.1 167623426 5906512 1797627..1798823 1 NC_010334.1 KEGG: sas:SAS0105 hypothetical protein; hypothetical protein 1798823 5906512 Shal_1495 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673720.1 1797627 D 458817 CDS YP_001673721.1 167623427 5906513 1798798..1799994 1 NC_010334.1 PFAM: glycosyl transferase group 1; KEGG: gvi:glr0463 probable glycosyltransferase; group 1 glycosyl transferase 1799994 5906513 Shal_1496 Shewanella halifaxensis HAW-EB4 group 1 glycosyl transferase YP_001673721.1 1798798 D 458817 CDS YP_001673722.1 167623428 5906201 1800054..1801109 1 NC_010334.1 PFAM: Protein of unknown function DUF1972; KEGG: sfr:Sfri_2826 glycosyl transferase, group 1; hypothetical protein 1801109 5906201 Shal_1497 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673722.1 1800054 D 458817 CDS YP_001673723.1 167623429 5906130 1801152..1802228 1 NC_010334.1 TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase family 4; KEGG: sfr:Sfri_2825 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 1802228 5906130 Shal_1498 Shewanella halifaxensis HAW-EB4 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_001673723.1 1801152 D 458817 CDS YP_001673724.1 167623430 5906131 1802396..1803442 1 NC_010334.1 TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase family 4; KEGG: sfr:Sfri_2824 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 1803442 5906131 Shal_1499 Shewanella halifaxensis HAW-EB4 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_001673724.1 1802396 D 458817 CDS YP_001673725.1 167623431 5904369 complement(1803807..1805300) 1 NC_010334.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: sfr:Sfri_2820 beta-lactamase domain protein; beta-lactamase domain-containing protein 1805300 5904369 Shal_1500 Shewanella halifaxensis HAW-EB4 beta-lactamase domain-containing protein YP_001673725.1 1803807 R 458817 CDS YP_001673726.1 167623432 5904370 1805885..1807054 1 NC_010334.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: she:Shewmr4_1330 UDP-glucose 6-dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase 1807054 5904370 Shal_1501 Shewanella halifaxensis HAW-EB4 UDP-glucose/GDP-mannose dehydrogenase YP_001673726.1 1805885 D 458817 CDS YP_001673727.1 167623433 5906107 1807480..1808490 1 NC_010334.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: shn:Shewana3_4089 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1808490 5906107 Shal_1502 Shewanella halifaxensis HAW-EB4 NAD-dependent epimerase/dehydratase YP_001673727.1 1807480 D 458817 CDS YP_001673728.1 167623434 5906108 1809065..1809634 1 NC_010334.1 KEGG: sdn:Sden_2548 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1809634 5906108 Shal_1503 Shewanella halifaxensis HAW-EB4 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001673728.1 1809065 D 458817 CDS YP_001673729.1 167623435 5905307 complement(1810030..1811427) 1 NC_010334.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: sbl:Sbal_2320 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 1811427 5905307 Shal_1504 Shewanella halifaxensis HAW-EB4 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_001673729.1 1810030 R 458817 CDS YP_001673730.1 167623436 5905308 complement(1811427..1811882) 1 NC_010334.1 KEGG: shn:Shewana3_2003 glycerol-3-phosphate cytidylyltransferase; TIGRFAM: cytidyltransferase-related domain; glycerol-3-phosphate cytidylyltransferase; PFAM: cytidylyltransferase; glycerol-3-phosphate cytidylyltransferase 1811882 5905308 Shal_1505 Shewanella halifaxensis HAW-EB4 glycerol-3-phosphate cytidylyltransferase YP_001673730.1 1811427 R 458817 CDS YP_001673731.1 167623437 5904503 complement(1811935..1813377) 1 NC_010334.1 KEGG: shn:Shewana3_2004 nucleotidyl transferase; nucleotidyl transferase 1813377 5904503 Shal_1506 Shewanella halifaxensis HAW-EB4 nucleotidyl transferase YP_001673731.1 1811935 R 458817 CDS YP_001673732.1 167623438 5904504 complement(1813388..1815556) 1 NC_010334.1 KEGG: shn:Shewana3_2005 glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: sugar transferase; glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase 1815556 5904504 Shal_1507 Shewanella halifaxensis HAW-EB4 WecB/TagA/CpsF family glycosyl transferase YP_001673732.1 1813388 R 458817 CDS YP_001673733.1 167623439 5904996 complement(1815775..1816884) 1 NC_010334.1 PFAM: glycosyl transferase family 2; KEGG: shn:Shewana3_2006 glycosyl transferase, family 2; glycosyl transferase family protein 1816884 5904996 Shal_1508 Shewanella halifaxensis HAW-EB4 glycosyl transferase family protein YP_001673733.1 1815775 R 458817 CDS YP_001673734.1 167623440 5906684 complement(1816874..1818217) 1 NC_010334.1 PFAM: polysaccharide biosynthesis protein; KEGG: shn:Shewana3_2007 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1818217 5906684 Shal_1509 Shewanella halifaxensis HAW-EB4 polysaccharide biosynthesis protein YP_001673734.1 1816874 R 458817 CDS YP_001673735.1 167623441 5906685 complement(1818748..1820016) 1 NC_010334.1 KEGG: shn:Shewana3_2008 hypothetical protein; hypothetical protein 1820016 5906685 Shal_1510 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673735.1 1818748 R 458817 CDS YP_001673736.1 167623442 5903731 complement(1819974..1821383) 1 NC_010334.1 KEGG: shn:Shewana3_2009 hypothetical protein; hypothetical protein 1821383 5903731 Shal_1511 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673736.1 1819974 R 458817 CDS YP_001673737.1 167623443 5903732 complement(1821408..1822709) 1 NC_010334.1 PFAM: polysaccharide export protein; KEGG: shn:Shewana3_2010 polysaccharide export protein; polysaccharide export protein 1822709 5903732 Shal_1512 Shewanella halifaxensis HAW-EB4 polysaccharide export protein YP_001673737.1 1821408 R 458817 CDS YP_001673738.1 167623444 5904588 complement(1822722..1823087) 1 NC_010334.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: shn:Shewana3_2011 anti-sigma-factor antagonist; anti-sigma-factor antagonist 1823087 5904588 Shal_1513 Shewanella halifaxensis HAW-EB4 anti-sigma-factor antagonist YP_001673738.1 1822722 R 458817 CDS YP_001673739.1 167623445 5904589 complement(1824161..1824550) 1 NC_010334.1 KEGG: shn:Shewana3_2012 putative anti-sigma regulatory factor, serine/threonine protein kinase; putative anti-sigma regulatory factor 1824550 5904589 Shal_1514 Shewanella halifaxensis HAW-EB4 putative anti-sigma regulatory factor YP_001673739.1 1824161 R 458817 CDS YP_001673740.1 167623446 5905662 complement(1824560..1825795) 1 NC_010334.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: shn:Shewana3_2013 response regulator receiver modulated serine phosphatase; response regulator receiver modulated serine phosphatase 1825795 5905662 Shal_1515 Shewanella halifaxensis HAW-EB4 response regulator receiver modulated serine phosphatase YP_001673740.1 1824560 R 458817 CDS YP_001673741.1 167623447 5905663 1826107..1826973 1 NC_010334.1 KEGG: shn:Shewana3_2014 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 1826973 5905663 Shal_1516 Shewanella halifaxensis HAW-EB4 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_001673741.1 1826107 D 458817 CDS YP_001673742.1 167623448 5905978 1826973..1830515 1 NC_010334.1 KEGG: shn:Shewana3_2015 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 1830515 5905978 Shal_1517 Shewanella halifaxensis HAW-EB4 multi-sensor hybrid histidine kinase YP_001673742.1 1826973 D 458817 CDS YP_001673743.1 167623449 5905979 1830631..1832142 1 NC_010334.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: shn:Shewana3_2016 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma54 specific transcriptional regulator 1832142 5905979 Shal_1518 Shewanella halifaxensis HAW-EB4 Fis family two component sigma54 specific transcriptional regulator YP_001673743.1 1830631 D 458817 CDS YP_001673744.1 167623450 5906651 1832276..1833025 1 NC_010334.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sfr:Sfri_3709 PHP C-terminal domain protein; putative hydrolase 1833025 5906651 Shal_1519 Shewanella halifaxensis HAW-EB4 putative hydrolase YP_001673744.1 1832276 D 458817 CDS YP_001673745.1 167623451 5906652 1833063..1834190 1 NC_010334.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: she:Shewmr4_2618 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1834190 5906652 Shal_1520 Shewanella halifaxensis HAW-EB4 dTDP-4-dehydrorhamnose reductase YP_001673745.1 1833063 D 458817 CDS YP_001673746.1 167623452 5906353 complement(1834620..1836086) 1 NC_010334.1 KEGG: slo:Shew_1426 hypothetical protein; hypothetical protein 1836086 5906353 Shal_1521 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673746.1 1834620 R 458817 CDS YP_001673747.1 167623453 5906354 1836376..1838925 1 NC_010334.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: sbm:Shew185_1185 glycoside hydrolase family 3 domain protein; glycoside hydrolase family 3 1838925 5906354 Shal_1522 Shewanella halifaxensis HAW-EB4 glycoside hydrolase family 3 YP_001673747.1 1836376 D 458817 CDS YP_001673748.1 167623454 5905706 1839228..1840013 1 NC_010334.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: slo:Shew_1427 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 1840013 5905706 Shal_1523 Shewanella halifaxensis HAW-EB4 3'(2'),5'-bisphosphate nucleotidase YP_001673748.1 1839228 D 458817 CDS YP_001673749.1 167623455 5905730 1840113..1841006 1 NC_010334.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 1841006 5905730 Shal_1524 Shewanella halifaxensis HAW-EB4 fructokinase YP_001673749.1 1840113 D 458817 CDS YP_001673750.1 167623456 5905731 1841173..1841934 1 NC_010334.1 PFAM: protein of unknown function DUF218; KEGG: slo:Shew_1429 protein of unknown function DUF218; hypothetical protein 1841934 5905731 Shal_1525 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673750.1 1841173 D 458817 CDS YP_001673751.1 167623457 5905680 1842390..1843055 1 NC_010334.1 KEGG: sfr:Sfri_1323 hypothetical protein; hypothetical protein 1843055 5905680 Shal_1526 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673751.1 1842390 D 458817 CDS YP_001673752.1 167623458 5905681 complement(1843146..1843568) 1 NC_010334.1 PFAM: protein of unknown function DUF583; KEGG: slo:Shew_1431 protein of unknown function DUF583; hypothetical protein 1843568 5905681 Shal_1527 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673752.1 1843146 R 458817 CDS YP_001673753.1 167623459 5905352 complement(1843671..1844150) 1 NC_010334.1 TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_2718 ferredoxin-type protein NapF; ferredoxin-type protein NapF 1844150 5905352 Shal_1528 Shewanella halifaxensis HAW-EB4 ferredoxin-type protein NapF YP_001673753.1 1843671 R 458817 CDS YP_001673754.1 167623460 5905353 complement(1844331..1845350) 1 NC_010334.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: shn:Shewana3_2783 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 1845350 5905353 Shal_1529 Shewanella halifaxensis HAW-EB4 UDP-glucose 4-epimerase YP_001673754.1 1844331 R 458817 CDS YP_001673755.1 167623461 5903445 complement(1845436..1846344) 1 NC_010334.1 KEGG: sbm:Shew185_1478 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 1846344 5903445 Shal_1530 Shewanella halifaxensis HAW-EB4 UTP-glucose-1-phosphate uridylyltransferase YP_001673755.1 1845436 R 458817 CDS YP_001673756.1 167623462 5903446 1846792..1847583 1 NC_010334.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 1847583 phhA 5903446 phhA Shewanella halifaxensis HAW-EB4 phenylalanine 4-monooxygenase YP_001673756.1 1846792 D 458817 CDS YP_001673757.1 167623463 5903329 1847656..1847994 1 NC_010334.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 1847994 phhB 5903329 phhB Shewanella halifaxensis HAW-EB4 pterin-4-alpha-carbinolamine dehydratase YP_001673757.1 1847656 D 458817 CDS YP_001673758.1 167623464 5903330 1848208..1849755 1 NC_010334.1 PFAM: sigma-54 factor interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: slo:Shew_1437 transcriptional regulator, TyrR; transcriptional regulator TyrR 1849755 5903330 Shal_1533 Shewanella halifaxensis HAW-EB4 transcriptional regulator TyrR YP_001673758.1 1848208 D 458817 CDS YP_001673759.1 167623465 5904365 1850016..1851002 1 NC_010334.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sbm:Shew185_1482 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 1851002 5904365 Shal_1534 Shewanella halifaxensis HAW-EB4 fumarylacetoacetate (FAA) hydrolase YP_001673759.1 1850016 D 458817 CDS YP_001673760.1 167623466 5904366 1851114..1851764 1 NC_010334.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: shm:Shewmr7_2670 maleylacetoacetate isomerase; maleylacetoacetate isomerase 1851764 5904366 Shal_1535 Shewanella halifaxensis HAW-EB4 maleylacetoacetate isomerase YP_001673760.1 1851114 D 458817 CDS YP_001673761.1 167623467 5904668 complement(1851923..1852834) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_1691 transcriptional regulator, LysR family; LysR family transcriptional regulator 1852834 5904668 Shal_1536 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001673761.1 1851923 R 458817 CDS YP_001673762.1 167623468 5903950 1853012..1854241 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_1441 major facilitator superfamily MFS_1; major facilitator transporter 1854241 5903950 Shal_1537 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001673762.1 1853012 D 458817 CDS YP_001673763.1 167623469 5903951 complement(1854346..1854573) 1 NC_010334.1 KEGG: slo:Shew_1448 hypothetical protein; hypothetical protein 1854573 5903951 Shal_1538 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673763.1 1854346 R 458817 CDS YP_001673764.1 167623470 5903706 1856456..1857865 1 NC_010334.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1857865 gltX 5903706 gltX Shewanella halifaxensis HAW-EB4 glutamyl-tRNA synthetase YP_001673764.1 1856456 D 458817 CDS YP_001673765.1 167623471 5905625 complement(1860322..1862151) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_1451 ABC transporter-related protein; ABC transporter-like protein 1862151 5905625 Shal_1540 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001673765.1 1860322 R 458817 CDS YP_001673766.1 167623472 5905716 1862328..1863830 1 NC_010334.1 PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; AlkA domain protein; SMART: HhH-GPD family protein; KEGG: shm:Shewmr7_1432 transcriptional regulator, AraC family; AraC family transcriptional regulator 1863830 5905716 Shal_1541 Shewanella halifaxensis HAW-EB4 AraC family transcriptional regulator YP_001673766.1 1862328 D 458817 CDS YP_001673767.1 167623473 5904383 1863827..1864390 1 NC_010334.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: son:SO_3126 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 1864390 5904383 Shal_1542 Shewanella halifaxensis HAW-EB4 methylated-DNA--protein-cysteine methyltransferase YP_001673767.1 1863827 D 458817 CDS YP_001673768.1 167623474 5904384 1864577..1865905 1 NC_010334.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: slo:Shew_1454 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 1865905 5904384 Shal_1543 Shewanella halifaxensis HAW-EB4 DEAD/DEAH box helicase YP_001673768.1 1864577 D 458817 CDS YP_001673769.1 167623475 5906303 1866114..1866584 1 NC_010334.1 PFAM: Dual specificity protein phosphatase; KEGG: shw:Sputw3181_1514 dual specificity protein phosphatase; dual specificity protein phosphatase 1866584 5906303 Shal_1544 Shewanella halifaxensis HAW-EB4 dual specificity protein phosphatase YP_001673769.1 1866114 D 458817 CDS YP_001673770.1 167623476 5906304 1866611..1868155 1 NC_010334.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: slo:Shew_1456 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 1868155 5906304 Shal_1545 Shewanella halifaxensis HAW-EB4 phospholipase D/transphosphatidylase YP_001673770.1 1866611 D 458817 CDS YP_001673771.1 167623477 5905831 1868247..1869149 1 NC_010334.1 PFAM: response regulator receiver; CheW domain protein; KEGG: slo:Shew_1457 response regulator receiver modulated CheW protein; response regulator receiver modulated CheW protein 1869149 5905831 Shal_1546 Shewanella halifaxensis HAW-EB4 response regulator receiver modulated CheW protein YP_001673771.1 1868247 D 458817 CDS YP_001673772.1 167623478 5905832 1869330..1870553 1 NC_010334.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 1870553 5905832 Shal_1547 Shewanella halifaxensis HAW-EB4 serine/threonine transporter SstT YP_001673772.1 1869330 D 458817 CDS YP_001673773.1 167623479 5904963 complement(1870628..1870834) 1 NC_010334.1 KEGG: sbm:Shew185_2813 oxidoreductase domain protein; oxidoreductase domain-containing protein 1870834 5904963 Shal_1548 Shewanella halifaxensis HAW-EB4 oxidoreductase domain-containing protein YP_001673773.1 1870628 R 458817 CDS YP_001673774.1 167623480 5904923 1871168..1871578 1 NC_010334.1 KEGG: slo:Shew_1459 hypothetical protein; hypothetical protein 1871578 5904923 Shal_1549 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673774.1 1871168 D 458817 CDS YP_001673775.1 167623481 5904924 complement(1871662..1872330) 1 NC_010334.1 PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_1442 pseudouridylate synthase; lysozyme 1872330 5904924 Shal_1550 Shewanella halifaxensis HAW-EB4 lysozyme YP_001673775.1 1871662 R 458817 CDS YP_001673776.1 167623482 5904437 complement(1872474..1873067) 1 NC_010334.1 PFAM: protein of unknown function DUF479; KEGG: slo:Shew_2339 protein of unknown function DUF479; hypothetical protein 1873067 5904437 Shal_1551 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673776.1 1872474 R 458817 CDS YP_001673777.1 167623483 5904438 1873233..1873406 1 NC_010334.1 KEGG: shn:Shewana3_1433 hypothetical protein; hypothetical protein 1873406 5904438 Shal_1552 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673777.1 1873233 D 458817 CDS YP_001673778.1 167623484 5902723 1873524..1874561 1 NC_010334.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1874561 queA 5902723 queA Shewanella halifaxensis HAW-EB4 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_001673778.1 1873524 D 458817 CDS YP_001673779.1 167623485 5902724 1874742..1875875 1 NC_010334.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1875875 tgt 5902724 tgt Shewanella halifaxensis HAW-EB4 queuine tRNA-ribosyltransferase YP_001673779.1 1874742 D 458817 CDS YP_001673780.1 167623486 5902638 1875903..1876235 1 NC_010334.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1876235 yajC 5902638 yajC Shewanella halifaxensis HAW-EB4 preprotein translocase subunit YajC YP_001673780.1 1875903 D 458817 CDS YP_001673781.1 167623487 5902639 1876253..1878103 1 NC_010334.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1878103 secD 5902639 secD Shewanella halifaxensis HAW-EB4 preprotein translocase subunit SecD YP_001673781.1 1876253 D 458817 CDS YP_001673782.1 167623488 5906745 1878117..1879064 1 NC_010334.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1879064 secF 5906745 secF Shewanella halifaxensis HAW-EB4 preprotein translocase subunit SecF YP_001673782.1 1878117 D 458817 CDS YP_001673783.1 167623489 5906746 1879321..1879638 1 NC_010334.1 KEGG: slo:Shew_2333 hypothetical protein; hypothetical protein 1879638 5906746 Shal_1558 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673783.1 1879321 D 458817 CDS YP_001673784.1 167623490 5902653 1879638..1879997 1 NC_010334.1 PFAM: Rhodanese domain protein; KEGG: saz:Sama_2188 rhodanese-like protein; rhodanese domain-containing protein 1879997 5902653 Shal_1559 Shewanella halifaxensis HAW-EB4 rhodanese domain-containing protein YP_001673784.1 1879638 D 458817 CDS YP_001673785.1 167623491 5902654 1880034..1880945 1 NC_010334.1 TIGRFAM: siroheme synthase; KEGG: saz:Sama_2187 precorrin-2 oxidase / ferrochelatase; siroheme synthase 1880945 5902654 Shal_1560 Shewanella halifaxensis HAW-EB4 siroheme synthase YP_001673785.1 1880034 D 458817 CDS YP_001673786.1 167623492 5906088 1881097..1881642 1 NC_010334.1 PFAM: YaeQ family protein; KEGG: shw:Sputw3181_1530 YaeQ family protein; YaeQ family protein 1881642 5906088 Shal_1561 Shewanella halifaxensis HAW-EB4 YaeQ family protein YP_001673786.1 1881097 D 458817 CDS YP_001673787.1 167623493 5903032 complement(1881743..1883182) 1 NC_010334.1 PFAM: carbon starvation protein CstA; KEGG: slo:Shew_2330 carbon starvation protein CstA; carbon starvation protein CstA 1883182 5903032 Shal_1562 Shewanella halifaxensis HAW-EB4 carbon starvation protein CstA YP_001673787.1 1881743 R 458817 CDS YP_001673788.1 167623494 5903033 complement(1883318..1884028) 1 NC_010334.1 unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT 1884028 5903033 Shal_1563 Shewanella halifaxensis HAW-EB4 putative two-component response-regulatory protein YehT YP_001673788.1 1883318 R 458817 CDS YP_001673789.1 167623495 5903119 complement(1884032..1885705) 1 NC_010334.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: shm:Shewmr7_2501 signal transduction histidine kinase, LytS; signal transduction histidine kinase LytS 1885705 5903119 Shal_1564 Shewanella halifaxensis HAW-EB4 signal transduction histidine kinase LytS YP_001673789.1 1884032 R 458817 CDS YP_001673790.1 167623496 5903120 1885946..1886188 1 NC_010334.1 KEGG: sfr:Sfri_1783 hypothetical protein; hypothetical protein 1886188 5903120 Shal_1565 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673790.1 1885946 D 458817 CDS YP_001673791.1 167623497 5906964 complement(1886374..1886664) 1 NC_010334.1 PFAM: type IV pilus assembly PilZ; KEGG: saz:Sama_1286 hypothetical protein; type IV pilus assembly PilZ 1886664 5906964 Shal_1566 Shewanella halifaxensis HAW-EB4 type IV pilus assembly PilZ YP_001673791.1 1886374 R 458817 CDS YP_001673792.1 167623498 5906965 complement(1886859..1887266) 1 NC_010334.1 PFAM: phosphate-starvation-inducible E; KEGG: shn:Shewana3_2588 phosphate-starvation-inducible E; phosphate-starvation-inducible E 1887266 5906965 Shal_1567 Shewanella halifaxensis HAW-EB4 phosphate-starvation-inducible E YP_001673792.1 1886859 R 458817 CDS YP_001673793.1 167623499 5904239 complement(1887487..1888287) 1 NC_010334.1 PFAM: inositol monophosphatase; KEGG: slo:Shew_2321 inositol monophosphatase; inositol-phosphate phosphatase 1888287 5904239 Shal_1568 Shewanella halifaxensis HAW-EB4 inositol-phosphate phosphatase YP_001673793.1 1887487 R 458817 CDS YP_001673794.1 167623500 5904240 1888444..1889199 1 NC_010334.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: shw:Sputw3181_1859 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase 1889199 5904240 Shal_1569 Shewanella halifaxensis HAW-EB4 RNA methyltransferase YP_001673794.1 1888444 D 458817 CDS YP_001673795.1 167623501 5903087 1889225..1890046 1 NC_010334.1 TIGRFAM: serine O-acetyltransferase; KEGG: she:Shewmr4_1737 serine O-acetyltransferase; serine O-acetyltransferase 1890046 5903087 Shal_1570 Shewanella halifaxensis HAW-EB4 serine O-acetyltransferase YP_001673795.1 1889225 D 458817 CDS YP_001673796.1 167623502 5903088 1890243..1890704 1 NC_010334.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: slo:Shew_2318 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 1890704 5903088 Shal_1571 Shewanella halifaxensis HAW-EB4 BadM/Rrf2 family transcriptional regulator YP_001673796.1 1890243 D 458817 CDS YP_001673797.1 167623503 5903137 1890787..1892001 1 NC_010334.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 1892001 5903137 Shal_1572 Shewanella halifaxensis HAW-EB4 cysteine desulfurase YP_001673797.1 1890787 D 458817 CDS YP_001673798.1 167623504 5903138 1892042..1892425 1 NC_010334.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: slo:Shew_2316 FeS cluster assembly scaffold IscU; scaffold protein 1892425 5903138 Shal_1573 Shewanella halifaxensis HAW-EB4 scaffold protein YP_001673798.1 1892042 D 458817 CDS YP_001673799.1 167623505 5904598 1892440..1892763 1 NC_010334.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: slo:Shew_2315 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA 1892763 5904598 Shal_1574 Shewanella halifaxensis HAW-EB4 iron-sulfur cluster assembly protein IscA YP_001673799.1 1892440 D 458817 CDS YP_001673800.1 167623506 5904793 1892782..1893306 1 NC_010334.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1893306 hscB 5904793 hscB Shewanella halifaxensis HAW-EB4 co-chaperone HscB YP_001673800.1 1892782 D 458817 CDS YP_001673801.1 167623507 5904794 1893376..1895238 1 NC_010334.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 1895238 hscA 5904794 hscA Shewanella halifaxensis HAW-EB4 chaperone protein HscA YP_001673801.1 1893376 D 458817 CDS YP_001673802.1 167623508 5905035 1895247..1895582 1 NC_010334.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: slo:Shew_2312 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system 1895582 5905035 Shal_1577 Shewanella halifaxensis HAW-EB4 ferredoxin, 2Fe-2S type, ISC system YP_001673802.1 1895247 D 458817 CDS YP_001673803.1 167623509 5905036 1895855..1896052 1 NC_010334.1 PFAM: protein of unknown function DUF528; KEGG: slo:Shew_2311 protein of unknown function DUF528; hypothetical protein 1896052 5905036 Shal_1578 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673803.1 1895855 D 458817 CDS YP_001673804.1 167623510 5905031 1896270..1896434 1 NC_010334.1 KEGG: saz:Sama_1300 hypothetical protein; hypothetical protein 1896434 5905031 Shal_1579 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673804.1 1896270 D 458817 CDS YP_001673805.1 167623511 5905032 1896663..1897094 1 NC_010334.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1897094 ndk 5905032 ndk Shewanella halifaxensis HAW-EB4 nucleoside diphosphate kinase YP_001673805.1 1896663 D 458817 CDS YP_001673806.1 167623512 5905136 1897918..1900671 1 NC_010334.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfr:Sfri_2416 TonB-dependent receptor; TonB-dependent receptor 1900671 5905136 Shal_1581 Shewanella halifaxensis HAW-EB4 TonB-dependent receptor YP_001673806.1 1897918 D 458817 CDS YP_001673807.1 167623513 5905137 complement(1900775..1901131) 1 NC_010334.1 KEGG: shn:Shewana3_2453 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 1901131 5905137 Shal_1582 Shewanella halifaxensis HAW-EB4 TraR/DksA family transcriptional regulator YP_001673807.1 1900775 R 458817 CDS YP_001673808.1 167623514 5905159 complement(1901250..1902233) 1 NC_010334.1 PFAM: dihydrouridine synthase DuS; KEGG: son:SO_2006 NifR3/Smm1 family protein; dihydrouridine synthase DuS 1902233 5905159 Shal_1583 Shewanella halifaxensis HAW-EB4 dihydrouridine synthase DuS YP_001673808.1 1901250 R 458817 CDS YP_001673809.1 167623515 5905160 1902571..1903020 1 NC_010334.1 KEGG: slo:Shew_2241 hypothetical protein; hypothetical protein 1903020 5905160 Shal_1584 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673809.1 1902571 D 458817 CDS YP_001673810.1 167623516 5905404 1903119..1903961 1 NC_010334.1 PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: sbm:Shew185_2620 protein of unknown function DUF692; hypothetical protein 1903961 5905404 Shal_1585 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673810.1 1903119 D 458817 CDS YP_001673811.1 167623517 5905405 1903961..1904716 1 NC_010334.1 KEGG: sdn:Sden_2385 hypothetical protein; hypothetical protein 1904716 5905405 Shal_1586 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673811.1 1903961 D 458817 CDS YP_001673812.1 167623518 5905458 1904806..1904925 1 NC_010334.1 KEGG: sfr:Sfri_2410 hypothetical protein; hypothetical protein 1904925 5905458 Shal_1587 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673812.1 1904806 D 458817 CDS YP_001673813.1 167623519 5906008 1904999..1905367 1 NC_010334.1 PFAM: protein of unknown function DUF454; KEGG: slo:Shew_2237 protein of unknown function DUF454; hypothetical protein 1905367 5906008 Shal_1588 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673813.1 1904999 D 458817 CDS YP_001673814.1 167623520 5906009 1905624..1906175 1 NC_010334.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1906175 5906009 Shal_1589 Shewanella halifaxensis HAW-EB4 adenine phosphoribosyltransferase YP_001673814.1 1905624 D 458817 CDS YP_001673815.1 167623521 5906084 1906374..1909166 1 NC_010334.1 KEGG: slo:Shew_2235 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 1909166 5906084 Shal_1590 Shewanella halifaxensis HAW-EB4 DNA polymerase III subunits gamma and tau YP_001673815.1 1906374 D 458817 CDS YP_001673816.1 167623522 5906085 1909267..1909596 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: slo:Shew_2234 conserved hypothetical protein 103; hypothetical protein 1909596 5906085 Shal_1591 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673816.1 1909267 D 458817 CDS YP_001673817.1 167623523 5906237 complement(1909833..1910399) 1 NC_010334.1 KEGG: pin:Ping_1731 galactoside O-acetyltransferase; acetyltransferase 1910399 5906237 Shal_1592 Shewanella halifaxensis HAW-EB4 acetyltransferase YP_001673817.1 1909833 R 458817 CDS YP_001673818.1 167623524 5906238 1910914..1911600 1 NC_010334.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: lpp:lpp2174 hypothetical protein; Sel1 domain-containing protein 1911600 5906238 Shal_1593 Shewanella halifaxensis HAW-EB4 Sel1 domain-containing protein YP_001673818.1 1910914 D 458817 CDS YP_001673819.1 167623525 5906251 1911603..1912523 1 NC_010334.1 hypothetical protein 1912523 5906251 Shal_1594 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673819.1 1911603 D 458817 CDS YP_001673820.1 167623526 5906252 1912899..1913498 1 NC_010334.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1913498 recR 5906252 recR Shewanella halifaxensis HAW-EB4 recombination protein RecR YP_001673820.1 1912899 D 458817 CDS YP_001673821.1 167623527 5906428 1913688..1915607 1 NC_010334.1 molecular chaperone; heat shock protein 90 1915607 5906428 Shal_1596 Shewanella halifaxensis HAW-EB4 heat shock protein 90 YP_001673821.1 1913688 D 458817 CDS YP_001673822.1 167623528 5906429 1915690..1916535 1 NC_010334.1 PFAM: Thioredoxin domain; KEGG: slo:Shew_2231 thioredoxin domain protein; thioredoxin domain-containing protein 1916535 5906429 Shal_1597 Shewanella halifaxensis HAW-EB4 thioredoxin domain-containing protein YP_001673822.1 1915690 D 458817 CDS YP_001673823.1 167623529 5906506 1916716..1917360 1 NC_010334.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1917360 adk 5906506 adk Shewanella halifaxensis HAW-EB4 adenylate kinase YP_001673823.1 1916716 D 458817 CDS YP_001673824.1 167623530 5906507 1917536..1918531 1 NC_010334.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1918531 hemH 5906507 hemH Shewanella halifaxensis HAW-EB4 ferrochelatase YP_001673824.1 1917536 D 458817 CDS YP_001673825.1 167623531 5906603 1918772..1920100 1 NC_010334.1 PFAM: PfkB domain protein; KEGG: son:SO_2020 inosine-guanosine kinase; inosine kinase 1920100 5906603 Shal_1600 Shewanella halifaxensis HAW-EB4 inosine kinase YP_001673825.1 1918772 D 458817 CDS YP_001673826.1 167623532 5906617 1920228..1920782 1 NC_010334.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: vpa:VPA0209 hexapeptide-repeat containing-acetyltransferase; hexapaptide repeat-containing transferase 1920782 5906617 Shal_1601 Shewanella halifaxensis HAW-EB4 hexapaptide repeat-containing transferase YP_001673826.1 1920228 D 458817 CDS YP_001673827.1 167623533 5906618 complement(1920946..1922271) 1 NC_010334.1 PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_1657 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1922271 5906618 Shal_1602 Shewanella halifaxensis HAW-EB4 sodium:dicarboxylate symporter YP_001673827.1 1920946 R 458817 CDS YP_001673828.1 167623534 5906660 1922490..1924973 1 NC_010334.1 PFAM: Ig domain protein group 1 domain protein; KEGG: sdn:Sden_2330 Ig-like, group 1; Ig domain-containing protein 1924973 5906660 Shal_1603 Shewanella halifaxensis HAW-EB4 Ig domain-containing protein YP_001673828.1 1922490 D 458817 CDS YP_001673829.1 167623535 5906661 complement(1925047..1926384) 1 NC_010334.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 1926384 5906661 Shal_1604 Shewanella halifaxensis HAW-EB4 succinylarginine dihydrolase YP_001673829.1 1925047 R 458817 CDS YP_001673830.1 167623536 5906701 1926721..1929402 1 NC_010334.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1929402 5906701 Shal_1605 Shewanella halifaxensis HAW-EB4 DNA topoisomerase I YP_001673830.1 1926721 D 458817 CDS YP_001673831.1 167623537 5906702 complement(1929601..1930377) 1 NC_010334.1 KEGG: slo:Shew_1623 hypothetical protein; hypothetical protein 1930377 5906702 Shal_1606 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673831.1 1929601 R 458817 CDS YP_001673832.1 167623538 5906835 1930604..1931578 1 NC_010334.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1931578 cysB 5906835 cysB Shewanella halifaxensis HAW-EB4 transcriptional regulator CysB YP_001673832.1 1930604 D 458817 CDS YP_001673833.1 167623539 5906836 complement(1931674..1933050) 1 NC_010334.1 KEGG: she:Shewmr4_1725 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 1933050 5906836 Shal_1608 Shewanella halifaxensis HAW-EB4 L-serine dehydratase 1 YP_001673833.1 1931674 R 458817 CDS YP_001673834.1 167623540 5907039 1933455..1934462 1 NC_010334.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1934462 5907039 Shal_1609 Shewanella halifaxensis HAW-EB4 beta-hexosaminidase YP_001673834.1 1933455 D 458817 CDS YP_001673835.1 167623541 5907040 1934536..1935072 1 NC_010334.1 PFAM: protein of unknown function UPF0227; KEGG: slo:Shew_1627 protein of unknown function UPF0227; hypothetical protein 1935072 5907040 Shal_1610 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673835.1 1934536 D 458817 CDS YP_001673836.1 167623542 5906001 1935259..1935528 1 NC_010334.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 1935528 5906001 Shal_1611 Shewanella halifaxensis HAW-EB4 acylphosphatase YP_001673836.1 1935259 D 458817 CDS YP_001673837.1 167623543 5906002 complement(1935531..1936547) 1 NC_010334.1 KEGG: sfr:Sfri_2400 hypothetical protein; hypothetical protein 1936547 5906002 Shal_1612 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673837.1 1935531 R 458817 CDS YP_001673838.1 167623544 5906014 complement(1936550..1940023) 1 NC_010334.1 KEGG: slo:Shew_1630 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 1940023 5906014 Shal_1613 Shewanella halifaxensis HAW-EB4 transcription-repair coupling factor YP_001673838.1 1936550 R 458817 CDS YP_001673839.1 167623545 5906189 complement(1940113..1940721) 1 NC_010334.1 KEGG: she:Shewmr4_1731 hypothetical protein; hypothetical protein 1940721 5906189 Shal_1614 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673839.1 1940113 R 458817 CDS YP_001673840.1 167623546 5906190 1940960..1942183 1 NC_010334.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: sbl:Sbal_2404 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 1942183 5906190 Shal_1615 Shewanella halifaxensis HAW-EB4 LolC/E family lipoprotein releasing system, transmembrane protein YP_001673840.1 1940960 D 458817 CDS YP_001673841.1 167623547 5906270 1942204..1942941 1 NC_010334.1 KEGG: spc:Sputcn32_2155 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 1942941 5906270 Shal_1616 Shewanella halifaxensis HAW-EB4 lipoprotein releasing system, ATP-binding protein YP_001673841.1 1942204 D 458817 CDS YP_001673842.1 167623548 5906271 1942938..1944191 1 NC_010334.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: slo:Shew_1634 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 1944191 5906271 Shal_1617 Shewanella halifaxensis HAW-EB4 LolC/E family lipoprotein releasing system, transmembrane protein YP_001673842.1 1942938 D 458817 CDS YP_001673843.1 167623549 5906295 complement(1944339..1944719) 1 NC_010334.1 KEGG: sfr:Sfri_0576 hypothetical protein; hypothetical protein 1944719 5906295 Shal_1618 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673843.1 1944339 R 458817 CDS YP_001673844.1 167623550 5906296 1944940..1945854 1 NC_010334.1 KEGG: slo:Shew_1461 zinc carboxypeptidase-related protein; zinc carboxypeptidase-like protein 1945854 5906296 Shal_1619 Shewanella halifaxensis HAW-EB4 zinc carboxypeptidase-like protein YP_001673844.1 1944940 D 458817 CDS YP_001673845.1 167623551 5906383 1946330..1946788 1 NC_010334.1 KEGG: sbm:Shew185_0087 hypothetical protein; hypothetical protein 1946788 5906383 Shal_1620 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673845.1 1946330 D 458817 CDS YP_001673846.1 167623552 5906384 complement(1946936..1947496) 1 NC_010334.1 PFAM: protein of unknown function DUF991; KEGG: slo:Shew_1489 protein of unknown function DUF991; hypothetical protein 1947496 5906384 Shal_1621 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673846.1 1946936 R 458817 CDS YP_001673847.1 167623553 5906606 complement(1947588..1948097) 1 NC_010334.1 KEGG: shm:Shewmr7_2287 hypothetical protein; hypothetical protein 1948097 5906606 Shal_1622 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673847.1 1947588 R 458817 CDS YP_001673848.1 167623554 5906607 1948309..1949142 1 NC_010334.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: she:Shewmr4_2209 ion transport protein; Ion transport protein 1949142 5906607 Shal_1623 Shewanella halifaxensis HAW-EB4 Ion transport protein YP_001673848.1 1948309 D 458817 CDS YP_001673849.1 167623555 5906674 1949185..1950711 1 NC_010334.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: shw:Sputw3181_1728 MATE efflux family protein; MATE efflux family protein 1950711 5906674 Shal_1624 Shewanella halifaxensis HAW-EB4 MATE efflux family protein YP_001673849.1 1949185 D 458817 CDS YP_001673850.1 167623556 5906675 complement(1950756..1951001) 1 NC_010334.1 KEGG: slo:Shew_1493 hypothetical protein; hypothetical protein 1951001 5906675 Shal_1625 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673850.1 1950756 R 458817 CDS YP_001673851.1 167623557 5906832 1951258..1951572 1 NC_010334.1 PFAM: protein of unknown function DUF437; KEGG: vvy:VVA0554 hypothetical protein; hypothetical protein 1951572 5906832 Shal_1626 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673851.1 1951258 D 458817 CDS YP_001673852.1 167623558 5905854 1951741..1952400 1 NC_010334.1 PFAM: regulatory protein TetR; KEGG: vfi:VF0296 hypothetical protein; TetR family transcriptional regulator 1952400 5905854 Shal_1627 Shewanella halifaxensis HAW-EB4 TetR family transcriptional regulator YP_001673852.1 1951741 D 458817 CDS YP_001673853.1 167623559 5905855 1952400..1953743 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: vha:VIBHAR_06540 hypothetical protein; RND family efflux transporter MFP subunit 1953743 5905855 Shal_1628 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001673853.1 1952400 D 458817 CDS YP_001673854.1 167623560 5906331 1953740..1956856 1 NC_010334.1 PFAM: acriflavin resistance protein; KEGG: vha:VIBHAR_06541 hypothetical protein; acriflavin resistance protein 1956856 5906331 Shal_1629 Shewanella halifaxensis HAW-EB4 acriflavin resistance protein YP_001673854.1 1953740 D 458817 CDS YP_001673855.1 167623561 5906332 1957121..1957510 1 NC_010334.1 hypothetical protein 1957510 5906332 Shal_1630 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673855.1 1957121 D 458817 CDS YP_001673856.1 167623562 5906815 complement(1957728..1958657) 1 NC_010334.1 KEGG: bba:Bd2856 hypothetical protein; hypothetical protein 1958657 5906815 Shal_1631 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673856.1 1957728 R 458817 CDS YP_001673857.1 167623563 5906816 complement(1958860..1959645) 1 NC_010334.1 PFAM: purine or other phosphorylase family 1; KEGG: vpa:VPA1089 putative 5'-methylthioadenosine/S-adenosylhomocy steine nuclosidase; purine phosphorylase family 1 1959645 5906816 Shal_1632 Shewanella halifaxensis HAW-EB4 purine phosphorylase family 1 YP_001673857.1 1958860 R 458817 CDS YP_001673858.1 167623564 5906069 complement(1959977..1960939) 1 NC_010334.1 PFAM: Integral membrane protein TerC; KEGG: ppr:PBPRA2002 hypothetical transmembrane transportprotein; integral membrane protein TerC 1960939 5906069 Shal_1633 Shewanella halifaxensis HAW-EB4 integral membrane protein TerC YP_001673858.1 1959977 R 458817 CDS YP_001673859.1 167623565 5906070 complement(1962081..1963043) 1 NC_010334.1 TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: sbm:Shew185_1682 integron integrase; integron integrase 1963043 5906070 Shal_1634 Shewanella halifaxensis HAW-EB4 integron integrase YP_001673859.1 1962081 R 458817 CDS YP_001673860.1 167623566 5905766 1963366..1964715 1 NC_010334.1 hypothetical protein 1964715 5905766 Shal_1635 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673860.1 1963366 D 458817 CDS YP_001673861.1 167623567 5905767 1964868..1965596 1 NC_010334.1 KEGG: asa:ASA_3857 hypothetical protein; hypothetical protein 1965596 5905767 Shal_1636 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673861.1 1964868 D 458817 CDS YP_001673862.1 167623568 5904415 1965996..1966799 1 NC_010334.1 KEGG: ppr:PBPRA1434 hypothetical Ap4A phosphorylase II; Ap4A phosphorylase II 1966799 5904415 Shal_1637 Shewanella halifaxensis HAW-EB4 Ap4A phosphorylase II YP_001673862.1 1965996 D 458817 CDS YP_001673863.1 167623569 5904416 complement(1966988..1967530) 1 NC_010334.1 KEGG: slo:Shew_1496 lipoprotein, putative; hypothetical protein 1967530 5904416 Shal_1638 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673863.1 1966988 R 458817 CDS YP_001673864.1 167623570 5905847 complement(1967776..1968207) 1 NC_010334.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: shw:Sputw3181_0824 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 1968207 5905847 Shal_1639 Shewanella halifaxensis HAW-EB4 glutathione-dependent formaldehyde-activating protein YP_001673864.1 1967776 R 458817 CDS YP_001673865.1 167623571 5905748 complement(1968534..1968977) 1 NC_010334.1 PFAM: UspA domain protein; KEGG: slo:Shew_3100 UspA domain protein; UspA domain-containing protein 1968977 5905748 Shal_1640 Shewanella halifaxensis HAW-EB4 UspA domain-containing protein YP_001673865.1 1968534 R 458817 CDS YP_001673866.1 167623572 5905749 1969558..1970820 1 NC_010334.1 PFAM: sodium:dicarboxylate symporter; KEGG: she:Shewmr4_0147 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1970820 5905749 Shal_1641 Shewanella halifaxensis HAW-EB4 sodium:dicarboxylate symporter YP_001673866.1 1969558 D 458817 CDS YP_001673867.1 167623573 5905756 complement(1970956..1971732) 1 NC_010334.1 PFAM: band 7 protein; KEGG: slo:Shew_1785 band 7 protein; hypothetical protein 1971732 5905756 Shal_1642 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673867.1 1970956 R 458817 CDS YP_001673868.1 167623574 5905757 complement(1971751..1973262) 1 NC_010334.1 PFAM: protein of unknown function DUF107; KEGG: sdn:Sden_2190 protein of unknown function DUF107; hypothetical protein 1973262 5905757 Shal_1643 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673868.1 1971751 R 458817 CDS YP_001673869.1 167623575 5904304 1973849..1975210 1 NC_010334.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1975210 5904304 Shal_1644 Shewanella halifaxensis HAW-EB4 Na(+)-translocating NADH-quinone reductase subunit A YP_001673869.1 1973849 D 458817 CDS YP_001673870.1 167623576 5904305 1975210..1976424 1 NC_010334.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1976424 5904305 Shal_1645 Shewanella halifaxensis HAW-EB4 Na(+)-translocating NADH-quinone reductase subunit B YP_001673870.1 1975210 D 458817 CDS YP_001673871.1 167623577 5905296 1976568..1977338 1 NC_010334.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1977338 5905296 Shal_1646 Shewanella halifaxensis HAW-EB4 Na(+)-translocating NADH-quinone reductase subunit C YP_001673871.1 1976568 D 458817 CDS YP_001673872.1 167623578 5905297 1977342..1977965 1 NC_010334.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1977965 5905297 Shal_1647 Shewanella halifaxensis HAW-EB4 Na(+)-translocating NADH-quinone reductase subunit D YP_001673872.1 1977342 D 458817 CDS YP_001673873.1 167623579 5903440 1977974..1978582 1 NC_010334.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1978582 5903440 Shal_1648 Shewanella halifaxensis HAW-EB4 Na(+)-translocating NADH-quinone reductase subunit E YP_001673873.1 1977974 D 458817 CDS YP_001673874.1 167623580 5903441 1978641..1979858 1 NC_010334.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1979858 5903441 Shal_1649 Shewanella halifaxensis HAW-EB4 Na(+)-translocating NADH-quinone reductase subunit F YP_001673874.1 1978641 D 458817 CDS YP_001673875.1 167623581 5905371 1979931..1980011 1 NC_010334.1 hypothetical protein 1980011 5905371 Shal_1650 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673875.1 1979931 D 458817 CDS YP_001673876.1 167623582 5905372 1980620..1980928 1 NC_010334.1 KEGG: saz:Sama_3567 hypothetical protein; hypothetical protein 1980928 5905372 Shal_1651 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673876.1 1980620 D 458817 CDS YP_001673877.1 167623583 5905293 1981125..1982930 1 NC_010334.1 PFAM: Arylsulfotransferase; KEGG: ecv:APECO1_3375 arylsulfate sulfotransferase; arylsulfotransferase 1982930 5905293 Shal_1652 Shewanella halifaxensis HAW-EB4 arylsulfotransferase YP_001673877.1 1981125 D 458817 CDS YP_001673878.1 167623584 5905305 complement(1983021..1983830) 1 NC_010334.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1983830 trpA 5905305 trpA Shewanella halifaxensis HAW-EB4 tryptophan synthase subunit alpha YP_001673878.1 1983021 R 458817 CDS YP_001673879.1 167623585 5905306 complement(1983823..1985082) 1 NC_010334.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1985082 5905306 Shal_1654 Shewanella halifaxensis HAW-EB4 tryptophan synthase subunit beta YP_001673879.1 1983823 R 458817 CDS YP_001673880.1 167623586 5905264 complement(1985187..1986626) 1 NC_010334.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1986626 5905264 Shal_1655 Shewanella halifaxensis HAW-EB4 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_001673880.1 1985187 R 458817 CDS YP_001673881.1 167623587 5905265 complement(1986628..1987704) 1 NC_010334.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1987704 trpD 5905265 trpD Shewanella halifaxensis HAW-EB4 anthranilate phosphoribosyltransferase YP_001673881.1 1986628 R 458817 CDS YP_001673882.1 167623588 5905078 complement(1987706..1988320) 1 NC_010334.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 1988320 5905078 Shal_1657 Shewanella halifaxensis HAW-EB4 anthranilate synthase component II YP_001673882.1 1987706 R 458817 CDS YP_001673883.1 167623589 5905079 complement(1988317..1989909) 1 NC_010334.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1989909 5905079 Shal_1658 Shewanella halifaxensis HAW-EB4 anthranilate synthase component I YP_001673883.1 1988317 R 458817 CDS YP_001673884.1 167623590 5904950 1990607..1991341 1 NC_010334.1 PFAM: protein of unknown function DUF1538; KEGG: slo:Shew_1497 protein of unknown function DUF1538; hypothetical protein 1991341 5904950 Shal_1659 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673884.1 1990607 D 458817 CDS YP_001673885.1 167623591 5904951 1991398..1992183 1 NC_010334.1 PFAM: protein of unknown function DUF1538; KEGG: slo:Shew_1498 protein of unknown function DUF1538; hypothetical protein 1992183 5904951 Shal_1660 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673885.1 1991398 D 458817 CDS YP_001673886.1 167623592 5904809 1992173..1992523 1 NC_010334.1 KEGG: sfr:Sfri_2273 putative nitrogen regulatory protein P-II; putative nitrogen regulatory protein P-II 1992523 5904809 Shal_1661 Shewanella halifaxensis HAW-EB4 putative nitrogen regulatory protein P-II YP_001673886.1 1992173 D 458817 CDS YP_001673887.1 167623593 5904810 1992520..1992927 1 NC_010334.1 PFAM: CBS domain containing protein; KEGG: slo:Shew_1500 putative signal transduction protein with CBS domains; signal-transduction protein 1992927 5904810 Shal_1662 Shewanella halifaxensis HAW-EB4 signal-transduction protein YP_001673887.1 1992520 D 458817 CDS YP_001673888.1 167623594 5902622 1993092..1993901 1 NC_010334.1 PFAM: regulatory protein RecX; KEGG: sfr:Sfri_0228 regulatory protein RecX; regulatory protein RecX 1993901 5902622 Shal_1663 Shewanella halifaxensis HAW-EB4 regulatory protein RecX YP_001673888.1 1993092 D 458817 CDS YP_001673889.1 167623595 5902623 complement(1993934..1994518) 1 NC_010334.1 hypothetical protein 1994518 5902623 Shal_1664 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673889.1 1993934 R 458817 CDS YP_001673890.1 167623596 5902675 1994903..1995454 1 NC_010334.1 PFAM: PEBP family protein; KEGG: rpa:RPA0709 hypothetical protein; PEBP family protein 1995454 5902675 Shal_1665 Shewanella halifaxensis HAW-EB4 PEBP family protein YP_001673890.1 1994903 D 458817 CDS YP_001673891.1 167623597 5902867 complement(1995552..1995908) 1 NC_010334.1 KEGG: shm:Shewmr7_2487 glutaredoxin; glutaredoxin 1995908 5902867 Shal_1666 Shewanella halifaxensis HAW-EB4 glutaredoxin YP_001673891.1 1995552 R 458817 CDS YP_001673892.1 167623598 5902868 complement(1995997..1996641) 1 NC_010334.1 PFAM: peptidase S51 dipeptidase E; KEGG: slo:Shew_1665 peptidase S51, dipeptidase E; peptidase S51 dipeptidase E 1996641 5902868 Shal_1667 Shewanella halifaxensis HAW-EB4 peptidase S51 dipeptidase E YP_001673892.1 1995997 R 458817 CDS YP_001673893.1 167623599 5903059 complement(1996837..1999950) 1 NC_010334.1 PFAM: protein of unknown function DUF748; KEGG: slo:Shew_1502 protein of unknown function DUF748; hypothetical protein 1999950 5903059 Shal_1668 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673893.1 1996837 R 458817 CDS YP_001673894.1 167623600 5903060 2000122..2001132 1 NC_010334.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: slo:Shew_1503 oxidoreductase FAD-binding domain protein; ferredoxin 2001132 5903060 Shal_1669 Shewanella halifaxensis HAW-EB4 ferredoxin YP_001673894.1 2000122 D 458817 CDS YP_001673895.1 167623601 5902935 2001259..2001966 1 NC_010334.1 KEGG: slo:Shew_1505 hypothetical protein; hypothetical protein 2001966 5902935 Shal_1670 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673895.1 2001259 D 458817 CDS YP_001673896.1 167623602 5902936 2002127..2002477 1 NC_010334.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_1598 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2002477 5902936 Shal_1671 Shewanella halifaxensis HAW-EB4 glyoxalase/bleomycin resistance protein/dioxygenase YP_001673896.1 2002127 D 458817 CDS YP_001673897.1 167623603 5902899 2002518..2002862 1 NC_010334.1 KEGG: slo:Shew_1507 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase 2002862 5902899 Shal_1672 Shewanella halifaxensis HAW-EB4 5-carboxymethyl-2-hydroxymuconate isomerase YP_001673897.1 2002518 D 458817 CDS YP_001673898.1 167623604 5902900 complement(2002997..2004661) 1 NC_010334.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 2004661 asnB 5902900 asnB Shewanella halifaxensis HAW-EB4 asparagine synthetase B YP_001673898.1 2002997 R 458817 CDS YP_001673899.1 167623605 5902829 complement(2005202..2006860) 1 NC_010334.1 PFAM: peptidase M28; KEGG: shn:Shewana3_2548 peptidase M28; peptidase M28 2006860 5902829 Shal_1674 Shewanella halifaxensis HAW-EB4 peptidase M28 YP_001673899.1 2005202 R 458817 CDS YP_001673900.1 167623606 5902830 complement(2007153..2007899) 1 NC_010334.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: saz:Sama_2099 NagD protein; UMP phosphatase 2007899 5902830 Shal_1675 Shewanella halifaxensis HAW-EB4 UMP phosphatase YP_001673900.1 2007153 R 458817 CDS YP_001673901.1 167623607 5902740 2008400..2010241 1 NC_010334.1 KEGG: ppr:PBPRB0205 hypothetical FOG: GGDEF domain; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 2010241 5902740 Shal_1676 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001673901.1 2008400 D 458817 CDS YP_001673902.1 167623608 5902741 2010377..2011915 1 NC_010334.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: vha:VIBHAR_02425 hypothetical protein; hypothetical protein 2011915 5902741 Shal_1677 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673902.1 2010377 D 458817 CDS YP_001673903.1 167623609 5903015 complement(2012131..2013225) 1 NC_010334.1 PFAM: TrkA-N domain protein; Ion transport protein; Ion transport 2 domain protein; KEGG: sdy:SDY_1308 putative potassium channel protein; voltage-gated potassium channel 2013225 5903015 Shal_1678 Shewanella halifaxensis HAW-EB4 voltage-gated potassium channel YP_001673903.1 2012131 R 458817 CDS YP_001673904.1 167623610 5902612 complement(2014017..2014661) 1 NC_010334.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2014661 purN 5902612 purN Shewanella halifaxensis HAW-EB4 phosphoribosylglycinamide formyltransferase YP_001673904.1 2014017 R 458817 CDS YP_001673905.1 167623611 5902613 complement(2014661..2015701) 1 NC_010334.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2015701 5902613 Shal_1680 Shewanella halifaxensis HAW-EB4 phosphoribosylaminoimidazole synthetase YP_001673905.1 2014661 R 458817 CDS YP_001673906.1 167623612 5902879 2015923..2016549 1 NC_010334.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2016549 upp 5902879 upp Shewanella halifaxensis HAW-EB4 uracil phosphoribosyltransferase YP_001673906.1 2015923 D 458817 CDS YP_001673907.1 167623613 5902880 complement(2016661..2017980) 1 NC_010334.1 PFAM: Gluconate transporter; Citrate transporter; Na+/H+ antiporter NhaC; KEGG: slo:Shew_1515 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 2017980 5902880 Shal_1682 Shewanella halifaxensis HAW-EB4 Na+/H+ antiporter NhaC YP_001673907.1 2016661 R 458817 CDS YP_001673908.1 167623614 5902871 2018292..2018897 1 NC_010334.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: slo:Shew_1516 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 2018897 5902871 Shal_1683 Shewanella halifaxensis HAW-EB4 alkyl hydroperoxide reductase YP_001673908.1 2018292 D 458817 CDS YP_001673909.1 167623615 5902872 complement(2019116..2019811) 1 NC_010334.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 2019811 5902872 Shal_1684 Shewanella halifaxensis HAW-EB4 ribonuclease T YP_001673909.1 2019116 R 458817 CDS YP_001673910.1 167623616 5903051 2019952..2020821 1 NC_010334.1 PFAM: OmpA/MotB domain protein; KEGG: slo:Shew_1521 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2020821 5903051 Shal_1685 Shewanella halifaxensis HAW-EB4 OmpA/MotB domain-containing protein YP_001673910.1 2019952 D 458817 CDS YP_001673911.1 167623617 5903052 2021471..2023627 1 NC_010334.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: slo:Shew_1522 prolyl oligopeptidase; prolyl oligopeptidase 2023627 5903052 Shal_1686 Shewanella halifaxensis HAW-EB4 prolyl oligopeptidase YP_001673911.1 2021471 D 458817 CDS YP_001673912.1 167623618 5902840 2023861..2024259 1 NC_010334.1 TIGRFAM: Pol-Pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: shn:Shewana3_2535 4-hydroxybenzoyl-CoA thioesterase; Pol-Pal system-associated acyl-CoA thioesterase 2024259 5902840 Shal_1687 Shewanella halifaxensis HAW-EB4 Pol-Pal system-associated acyl-CoA thioesterase YP_001673912.1 2023861 D 458817 CDS YP_001673913.1 167623619 5902841 2024249..2024938 1 NC_010334.1 TIGRFAM: Tol-Pal system TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: slo:Shew_1524 MotA/TolQ/ExbB proton channel; Tol-Pal system protein TolQ 2024938 5902841 Shal_1688 Shewanella halifaxensis HAW-EB4 Tol-Pal system protein TolQ YP_001673913.1 2024249 D 458817 CDS YP_001673914.1 167623620 5902642 2024938..2025375 1 NC_010334.1 TIGRFAM: Biopolymer transport TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: slo:Shew_1525 biopolymer transport protein ExbD/TolR; biopolymer transport TolR 2025375 5902642 Shal_1689 Shewanella halifaxensis HAW-EB4 biopolymer transport TolR YP_001673914.1 2024938 D 458817 CDS YP_001673915.1 167623621 5902643 2025376..2026311 1 NC_010334.1 TIGRFAM: Tol-Pal system TolA; PFAM: TolA family protein; KEGG: slo:Shew_1526 TolA family protein; Tol-Pal system TolA 2026311 5902643 Shal_1690 Shewanella halifaxensis HAW-EB4 Tol-Pal system TolA YP_001673915.1 2025376 D 458817 CDS YP_001673916.1 167623622 5902668 2026321..2027643 1 NC_010334.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2027643 tolB 5902668 tolB Shewanella halifaxensis HAW-EB4 translocation protein TolB YP_001673916.1 2026321 D 458817 CDS YP_001673917.1 167623623 5903458 2027668..2028207 1 NC_010334.1 TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: slo:Shew_1528 OmpA domain protein; peptidoglycan-associated lipoprotein 2028207 5903458 Shal_1692 Shewanella halifaxensis HAW-EB4 peptidoglycan-associated lipoprotein YP_001673917.1 2027668 D 458817 CDS YP_001673918.1 167623624 5903459 2028232..2028957 1 NC_010334.1 TIGRFAM: Tol-Pal system YbgF; KEGG: slo:Shew_1529 tetratricopeptide TPR_2 repeat protein; Tol-Pal system protein YbgF 2028957 5903459 Shal_1693 Shewanella halifaxensis HAW-EB4 Tol-Pal system protein YbgF YP_001673918.1 2028232 D 458817 CDS YP_001673919.1 167623625 5903179 2031280..2032440 1 NC_010334.1 PFAM: porin; KEGG: slo:Shew_1530 porin; porin 2032440 5903179 Shal_1694 Shewanella halifaxensis HAW-EB4 porin YP_001673919.1 2031280 D 458817 CDS YP_001673920.1 167623626 5902813 complement(2032505..2032771) 1 NC_010334.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 2032771 grxA 5902813 grxA Shewanella halifaxensis HAW-EB4 glutaredoxin YP_001673920.1 2032505 R 458817 CDS YP_001673921.1 167623627 5902814 complement(2032868..2034610) 1 NC_010334.1 PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shn:Shewana3_2524 type III restriction enzyme, res subunit; type III restriction protein res subunit 2034610 5902814 Shal_1696 Shewanella halifaxensis HAW-EB4 type III restriction protein res subunit YP_001673921.1 2032868 R 458817 CDS YP_001673922.1 167623628 5903133 complement(2034792..2036744) 1 NC_010334.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 2036744 5903133 Shal_1697 Shewanella halifaxensis HAW-EB4 acetyl-CoA synthetase YP_001673922.1 2034792 R 458817 CDS YP_001673923.1 167623629 5903134 2036919..2040347 1 NC_010334.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: slo:Shew_1534 integral membrane sensor hybrid histidine kinase; PAS/PAC sensor-containing hybrid histidine kinase 2040347 5903134 Shal_1698 Shewanella halifaxensis HAW-EB4 PAS/PAC sensor-containing hybrid histidine kinase YP_001673923.1 2036919 D 458817 CDS YP_001673924.1 167623630 5903173 complement(2040501..2040833) 1 NC_010334.1 KEGG: sfr:Sfri_1438 hypothetical protein; hypothetical protein 2040833 5903173 Shal_1699 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673924.1 2040501 R 458817 CDS YP_001673925.1 167623631 5903174 2041164..2042453 1 NC_010334.1 PFAM: FAD dependent oxidoreductase; KEGG: slo:Shew_1537 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2042453 5903174 Shal_1700 Shewanella halifaxensis HAW-EB4 FAD dependent oxidoreductase YP_001673925.1 2041164 D 458817 CDS YP_001673926.1 167623632 5902981 complement(2042574..2043233) 1 NC_010334.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: slo:Shew_1545 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2043233 5902981 Shal_1701 Shewanella halifaxensis HAW-EB4 two component LuxR family transcriptional regulator YP_001673926.1 2042574 R 458817 CDS YP_001673927.1 167623633 5902982 complement(2043462..2043884) 1 NC_010334.1 PFAM: thioesterase superfamily protein; KEGG: saz:Sama_2075 thioesterase superfamily; thioesterase superfamily protein 2043884 5902982 Shal_1702 Shewanella halifaxensis HAW-EB4 thioesterase superfamily protein YP_001673927.1 2043462 R 458817 CDS YP_001673928.1 167623634 5902646 complement(2044154..2045215) 1 NC_010334.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 2045215 5902646 Shal_1703 Shewanella halifaxensis HAW-EB4 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001673928.1 2044154 R 458817 CDS YP_001673929.1 167623635 5902993 complement(2045405..2046217) 1 NC_010334.1 PFAM: protein of unknown function DUF299; KEGG: son:SO_2645 hypothetical protein; hypothetical protein 2046217 5902993 Shal_1704 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673929.1 2045405 R 458817 CDS YP_001673930.1 167623636 5902994 2046344..2048713 1 NC_010334.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2048713 5902994 Shal_1705 Shewanella halifaxensis HAW-EB4 phosphoenolpyruvate synthase YP_001673930.1 2046344 D 458817 CDS YP_001673931.1 167623637 5903011 2048865..2051915 1 NC_010334.1 PFAM: FAD linked oxidase domain protein; KEGG: slo:Shew_1550 FAD linked oxidase domain protein; D-lactate dehydrogenase 2051915 5903011 Shal_1706 Shewanella halifaxensis HAW-EB4 D-lactate dehydrogenase YP_001673931.1 2048865 D 458817 CDS YP_001673932.1 167623638 5903012 2052072..2052515 1 NC_010334.1 KEGG: she:Shewmr4_1594 protein of unknown function DUF1285; hypothetical protein 2052515 5903012 Shal_1707 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673932.1 2052072 D 458817 CDS YP_001673933.1 167623639 5902764 2052671..2053084 1 NC_010334.1 PFAM: regulatory protein MarR; KEGG: shm:Shewmr7_1670 transcriptional regulator, MarR family; MarR family transcriptional regulator 2053084 5902764 Shal_1708 Shewanella halifaxensis HAW-EB4 MarR family transcriptional regulator YP_001673933.1 2052671 D 458817 CDS YP_001673934.1 167623640 5902765 2053448..2053858 1 NC_010334.1 KEGG: slo:Shew_1553 hypothetical protein; hypothetical protein 2053858 5902765 Shal_1709 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673934.1 2053448 D 458817 CDS YP_001673935.1 167623641 5902659 complement(2053918..2054262) 1 NC_010334.1 KEGG: shw:Sputw3181_1770 hypothetical protein; hypothetical protein 2054262 5902659 Shal_1710 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673935.1 2053918 R 458817 CDS YP_001673936.1 167623642 5902660 complement(2054437..2055468) 1 NC_010334.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: slo:Shew_1555 Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Glu/Leu/Phe/Val dehydrogenase 2055468 5902660 Shal_1711 Shewanella halifaxensis HAW-EB4 Glu/Leu/Phe/Val dehydrogenase YP_001673936.1 2054437 R 458817 CDS YP_001673937.1 167623643 5903147 2055733..2056158 1 NC_010334.1 KEGG: sfr:Sfri_2264 hypothetical protein; hypothetical protein 2056158 5903147 Shal_1712 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673937.1 2055733 D 458817 CDS YP_001673938.1 167623644 5903148 complement(2056349..2057719) 1 NC_010334.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2057719 5903148 Shal_1713 Shewanella halifaxensis HAW-EB4 adenylosuccinate lyase YP_001673938.1 2056349 R 458817 CDS YP_001673939.1 167623645 5902595 complement(2057751..2058368) 1 NC_010334.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2058368 5902595 Shal_1714 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673939.1 2057751 R 458817 CDS YP_001673940.1 167623646 5902596 complement(2058372..2059487) 1 NC_010334.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2059487 mnmA 5902596 mnmA Shewanella halifaxensis HAW-EB4 tRNA-specific 2-thiouridylase MnmA YP_001673940.1 2058372 R 458817 CDS YP_001673941.1 167623647 5903094 complement(2059767..2060219) 1 NC_010334.1 PFAM: NUDIX hydrolase; KEGG: sfr:Sfri_2259 NUDIX hydrolase; NUDIX hydrolase 2060219 5903094 Shal_1716 Shewanella halifaxensis HAW-EB4 NUDIX hydrolase YP_001673941.1 2059767 R 458817 CDS YP_001673942.1 167623648 5902620 complement(2060242..2060961) 1 NC_010334.1 PFAM: pseudouridine synthase; KEGG: she:Shewmr4_1605 pseudouridine synthase, Rsu; pseudouridine synthase 2060961 5902620 Shal_1717 Shewanella halifaxensis HAW-EB4 pseudouridine synthase YP_001673942.1 2060242 R 458817 CDS YP_001673943.1 167623649 5902621 2061266..2063488 1 NC_010334.1 KEGG: sfr:Sfri_2257 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase 2063488 5902621 Shal_1718 Shewanella halifaxensis HAW-EB4 isocitrate dehydrogenase YP_001673943.1 2061266 D 458817 CDS YP_001673944.1 167623650 5902602 complement(2063686..2063892) 1 NC_010334.1 KEGG: sbm:Shew185_2467 putative cold-shock DNA-binding domain protein; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 2063892 5902602 Shal_1719 Shewanella halifaxensis HAW-EB4 cold-shock DNA-binding domain-containing protein YP_001673944.1 2063686 R 458817 CDS YP_001673945.1 167623651 5902603 2064132..2064440 1 NC_010334.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2064440 clpS 5902603 clpS Shewanella halifaxensis HAW-EB4 ATP-dependent Clp protease adaptor protein ClpS YP_001673945.1 2064132 D 458817 CDS YP_001673946.1 167623652 5903002 2064478..2066736 1 NC_010334.1 KEGG: slo:Shew_1566 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2066736 5903002 Shal_1721 Shewanella halifaxensis HAW-EB4 ATP-dependent Clp protease ATP-binding protein ClpA YP_001673946.1 2064478 D 458817 CDS YP_001673947.1 167623653 5903003 complement(2066880..2067098) 1 NC_010334.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2067098 infA 5903003 infA Shewanella halifaxensis HAW-EB4 translation initiation factor IF-1 YP_001673947.1 2066880 R 458817 CDS YP_001673948.1 167623654 5903097 complement(2067218..2067937) 1 NC_010334.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2067937 5903097 Shal_1723 Shewanella halifaxensis HAW-EB4 arginyl-tRNA-protein transferase YP_001673948.1 2067218 R 458817 CDS YP_001673949.1 167623655 5903098 complement(2067927..2068637) 1 NC_010334.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2068637 aat 5903098 aat Shewanella halifaxensis HAW-EB4 leucyl/phenylalanyl-tRNA--protein transferase YP_001673949.1 2067927 R 458817 CDS YP_001673950.1 167623656 5902901 2068692..2069168 1 NC_010334.1 PFAM: 17 kDa surface antigen; KEGG: son:SO_2622 hypothetical protein; 17 kDa surface antigen 2069168 5902901 Shal_1725 Shewanella halifaxensis HAW-EB4 17 kDa surface antigen YP_001673950.1 2068692 D 458817 CDS YP_001673951.1 167623657 5902902 complement(2069334..2070695) 1 NC_010334.1 PFAM: regulatory protein GntR HTH; KEGG: sbl:Sbal_2383 putative transcriptional regulator, GntR family; GntR family transcriptional regulator 2070695 5902902 Shal_1726 Shewanella halifaxensis HAW-EB4 GntR family transcriptional regulator YP_001673951.1 2069334 R 458817 CDS YP_001673952.1 167623658 5903079 2070857..2071462 1 NC_010334.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shw:Sputw3181_1878 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 2071462 5903079 Shal_1727 Shewanella halifaxensis HAW-EB4 lysine exporter protein LysE/YggA YP_001673952.1 2070857 D 458817 CDS YP_001673953.1 167623659 5903080 complement(2071553..2072245) 1 NC_010334.1 PFAM: Glutathione S-transferase domain; KEGG: slo:Shew_1780 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 2072245 5903080 Shal_1728 Shewanella halifaxensis HAW-EB4 glutathione S-transferase domain-containing protein YP_001673953.1 2071553 R 458817 CDS YP_001673954.1 167623660 5902873 2072585..2073949 1 NC_010334.1 KEGG: slo:Shew_1787 hypothetical protein; putative chaperone 2073949 5902873 Shal_1729 Shewanella halifaxensis HAW-EB4 putative chaperone YP_001673954.1 2072585 D 458817 CDS YP_001673955.1 167623661 5902882 2074089..2074583 1 NC_010334.1 PFAM: CreA family protein; KEGG: she:Shewmr4_2205 CreA family protein; CreA family protein 2074583 5902882 Shal_1730 Shewanella halifaxensis HAW-EB4 CreA family protein YP_001673955.1 2074089 D 458817 CDS YP_001673956.1 167623662 5902883 complement(2074861..2075433) 1 NC_010334.1 KEGG: vha:VIBHAR_01338 hypothetical protein; hypothetical protein 2075433 5902883 Shal_1731 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673956.1 2074861 R 458817 CDS YP_001673957.1 167623663 5903175 complement(2075634..2076854) 1 NC_010334.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 2076854 5903175 Shal_1732 Shewanella halifaxensis HAW-EB4 cystathionine beta-lyase YP_001673957.1 2075634 R 458817 CDS YP_001673958.1 167623664 5903176 complement(2076947..2079130) 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_1790 integral membrane sensor signal transduction histidine kinase; histidine kinase 2079130 5903176 Shal_1733 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001673958.1 2076947 R 458817 CDS YP_001673959.1 167623665 5902929 complement(2079300..2079992) 1 NC_010334.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_1791 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2079992 5902929 Shal_1734 Shewanella halifaxensis HAW-EB4 two component transcriptional regulator YP_001673959.1 2079300 R 458817 CDS YP_001673960.1 167623666 5902930 2080249..2080986 1 NC_010334.1 PFAM: OmpA/MotB domain protein; KEGG: sfr:Sfri_1624 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2080986 5902930 Shal_1735 Shewanella halifaxensis HAW-EB4 OmpA/MotB domain-containing protein YP_001673960.1 2080249 D 458817 CDS YP_001673961.1 167623667 5902770 2081112..2083664 1 NC_010334.1 KEGG: sbl:Sbal_1843 vault protein inter-alpha-trypsin domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain; PFAM: von Willebrand factor type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; cell wall anchor domain-containing protein 2083664 5902770 Shal_1736 Shewanella halifaxensis HAW-EB4 cell wall anchor domain-containing protein YP_001673961.1 2081112 D 458817 CDS YP_001673962.1 167623668 5902771 2083657..2084331 1 NC_010334.1 PFAM: peptidase C60 sortase A and B; KEGG: she:Shewmr4_2199 sortase family protein; peptidase C60 sortase A and B 2084331 5902771 Shal_1737 Shewanella halifaxensis HAW-EB4 peptidase C60 sortase A and B YP_001673962.1 2083657 D 458817 CDS YP_001673963.1 167623669 5903162 complement(2084447..2085472) 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sbm:Shew185_1831 diguanylate cyclase; diguanylate cyclase 2085472 5903162 Shal_1738 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001673963.1 2084447 R 458817 CDS YP_001673964.1 167623670 5903163 complement(2085801..2086673) 1 NC_010334.1 KEGG: slo:Shew_1585 hypothetical protein; hypothetical protein 2086673 5903163 Shal_1739 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673964.1 2085801 R 458817 CDS YP_001673965.1 167623671 5902823 complement(2087135..2087506) 1 NC_010334.1 PFAM: diacylglycerol kinase; KEGG: sbm:Shew185_1837 diacylglycerol kinase; diacylglycerol kinase 2087506 5902823 Shal_1740 Shewanella halifaxensis HAW-EB4 diacylglycerol kinase YP_001673965.1 2087135 R 458817 CDS YP_001673966.1 167623672 5902824 2087765..2088652 1 NC_010334.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 2088652 5902824 Shal_1741 Shewanella halifaxensis HAW-EB4 DNA ligase YP_001673966.1 2087765 D 458817 CDS YP_001673967.1 167623673 5904301 complement(2088845..2089501) 1 NC_010334.1 PFAM: nitroreductase; KEGG: sfr:Sfri_1409 nitroreductase; nitroreductase 2089501 5904301 Shal_1742 Shewanella halifaxensis HAW-EB4 nitroreductase YP_001673967.1 2088845 R 458817 CDS YP_001673968.1 167623674 5903206 2089727..2090029 1 NC_010334.1 KEGG: pha:PSHAa2104 hypothetical protein; hypothetical protein 2090029 5903206 Shal_1743 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673968.1 2089727 D 458817 CDS YP_001673969.1 167623675 5903207 2090990..2096740 1 NC_010334.1 KEGG: shm:Shewmr7_3695 hypothetical protein; hypothetical protein 2096740 5903207 Shal_1744 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673969.1 2090990 D 458817 CDS YP_001673970.1 167623676 5903192 2096703..2097200 1 NC_010334.1 KEGG: pat:Patl_1737 hypothetical protein; hypothetical protein 2097200 5903192 Shal_1745 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673970.1 2096703 D 458817 CDS YP_001673971.1 167623677 5903193 complement(2097483..2097875) 1 NC_010334.1 hypothetical protein 2097875 5903193 Shal_1746 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673971.1 2097483 R 458817 CDS YP_001673972.1 167623678 5904603 2098102..2098434 1 NC_010334.1 hypothetical protein 2098434 5904603 Shal_1747 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673972.1 2098102 D 458817 CDS YP_001673973.1 167623679 5904604 2098508..2098861 1 NC_010334.1 KEGG: asu:Asuc_0026 putative lipoprotein; putative lipoprotein 2098861 5904604 Shal_1748 Shewanella halifaxensis HAW-EB4 putative lipoprotein YP_001673973.1 2098508 D 458817 CDS YP_001673974.1 167623680 5902907 2099025..2099510 1 NC_010334.1 hypothetical protein 2099510 5902907 Shal_1749 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673974.1 2099025 D 458817 CDS YP_001673975.1 167623681 5902908 2099743..2100126 1 NC_010334.1 hypothetical protein 2100126 5902908 Shal_1750 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673975.1 2099743 D 458817 CDS YP_001673976.1 167623682 5902719 2100197..2100478 1 NC_010334.1 KEGG: mes:Meso_4612 hypothetical protein; hypothetical protein 2100478 5902719 Shal_1751 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673976.1 2100197 D 458817 CDS YP_001673977.1 167623683 5902720 2100547..2101638 1 NC_010334.1 KEGG: pin:Ping_2153 kinase; kinase 2101638 5902720 Shal_1752 Shewanella halifaxensis HAW-EB4 kinase YP_001673977.1 2100547 D 458817 CDS YP_001673978.1 167623684 5902986 2101631..2103247 1 NC_010334.1 PFAM: GTP-binding protein HSR1-related; KEGG: pin:Ping_2152 GTP-binding protein, HSR1-related; GTP-binding protein HSR1-like 2103247 5902986 Shal_1753 Shewanella halifaxensis HAW-EB4 GTP-binding protein HSR1-like YP_001673978.1 2101631 D 458817 CDS YP_001673979.1 167623685 5902987 2103282..2104451 1 NC_010334.1 PFAM: Ankyrin; KEGG: spu:752165 similar to ankyrin 2,3/unc44; ankyrin 2104451 5902987 Shal_1754 Shewanella halifaxensis HAW-EB4 ankyrin YP_001673979.1 2103282 D 458817 CDS YP_001673980.1 167623686 5903161 2104454..2105092 1 NC_010334.1 KEGG: pin:Ping_2688 hypothetical protein; hypothetical protein 2105092 5903161 Shal_1755 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673980.1 2104454 D 458817 CDS YP_001673981.1 167623687 5903041 2105103..2107127 1 NC_010334.1 KEGG: cpf:CPF_0359 hypothetical protein; hypothetical protein 2107127 5903041 Shal_1756 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673981.1 2105103 D 458817 CDS YP_001673982.1 167623688 5903042 complement(2107557..2108426) 1 NC_010334.1 hypothetical protein 2108426 5903042 Shal_1757 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673982.1 2107557 R 458817 CDS YP_001673983.1 167623689 5902748 complement(2108732..2108953) 1 NC_010334.1 KEGG: sbm:Shew185_1989 hypothetical protein; hypothetical protein 2108953 5902748 Shal_1758 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673983.1 2108732 R 458817 CDS YP_001673984.1 167623690 5902606 complement(2109530..2109820) 1 NC_010334.1 hypothetical protein 2109820 5902606 Shal_1760 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673984.1 2109530 R 458817 CDS YP_001673985.1 167623691 5902607 2110054..2110515 1 NC_010334.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: shm:Shewmr7_2266 protein tyrosine phosphatase; protein tyrosine phosphatase 2110515 5902607 Shal_1761 Shewanella halifaxensis HAW-EB4 protein tyrosine phosphatase YP_001673985.1 2110054 D 458817 CDS YP_001673986.1 167623692 5902846 2110636..2112006 1 NC_010334.1 TIGRFAM: GTP1/OBG protein; PFAM: GTP-binding protein HSR1-related; KEGG: saz:Sama_0751 GTP-binding protein HflX; GTP1/OBG protein 2112006 5902846 Shal_1762 Shewanella halifaxensis HAW-EB4 GTP1/OBG protein YP_001673986.1 2110636 D 458817 CDS YP_001673987.1 167623693 5902847 complement(2112068..2113006) 1 NC_010334.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 2113006 rbgA 5902847 rbgA Shewanella halifaxensis HAW-EB4 ribosomal biogenesis GTPase YP_001673987.1 2112068 R 458817 CDS YP_001673988.1 167623694 5902801 complement(2113124..2113963) 1 NC_010334.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: slo:Shew_1590 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 2113963 5902801 Shal_1764 Shewanella halifaxensis HAW-EB4 2OG-Fe(II) oxygenase YP_001673988.1 2113124 R 458817 CDS YP_001673989.1 167623695 5902802 2114372..2115304 1 NC_010334.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 2115304 5902802 Shal_1765 Shewanella halifaxensis HAW-EB4 bifunctional methionine sulfoxide reductase B/A protein YP_001673989.1 2114372 D 458817 CDS YP_001673990.1 167623696 5902705 complement(2115389..2116948) 1 NC_010334.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: slo:Shew_1592 sulphate transporter; sulfate transporter 2116948 5902705 Shal_1766 Shewanella halifaxensis HAW-EB4 sulfate transporter YP_001673990.1 2115389 R 458817 CDS YP_001673991.1 167623697 5902706 complement(2117079..2120378) 1 NC_010334.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: slo:Shew_1593 ribonuclease, Rne/Rng family; ribonuclease 2120378 5902706 Shal_1767 Shewanella halifaxensis HAW-EB4 ribonuclease YP_001673991.1 2117079 R 458817 CDS YP_001673992.1 167623698 5902938 2120948..2121907 1 NC_010334.1 KEGG: slo:Shew_1594 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 2121907 5902938 Shal_1768 Shewanella halifaxensis HAW-EB4 RluA family pseudouridine synthase YP_001673992.1 2120948 D 458817 CDS YP_001673993.1 167623699 5902848 2121904..2122551 1 NC_010334.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: slo:Shew_1595 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 2122551 5902848 Shal_1769 Shewanella halifaxensis HAW-EB4 HAD family hydrolase YP_001673993.1 2121904 D 458817 CDS YP_001673994.1 167623700 5902849 complement(2122585..2122833) 1 NC_010334.1 hypothetical protein 2122833 5902849 Shal_1770 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673994.1 2122585 R 458817 CDS YP_001673995.1 167623701 5903232 complement(2123301..2123882) 1 NC_010334.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: she:Shewmr4_2402 maf protein; maf protein 2123882 5903232 Shal_1771 Shewanella halifaxensis HAW-EB4 maf protein YP_001673995.1 2123301 R 458817 CDS YP_001673996.1 167623702 5903233 2124857..2125381 1 NC_010334.1 PFAM: protein of unknown function DUF177; KEGG: son:SO_2781 hypothetical protein; hypothetical protein 2125381 5903233 Shal_1772 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001673996.1 2124857 D 458817 CDS YP_001673997.1 167623703 5903125 2125399..2125569 1 NC_010334.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2125569 rpmF 5903125 rpmF Shewanella halifaxensis HAW-EB4 50S ribosomal protein L32 YP_001673997.1 2125399 D 458817 CDS YP_001673998.1 167623704 5903126 2125585..2126613 1 NC_010334.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 2126613 5903126 Shal_1774 Shewanella halifaxensis HAW-EB4 putative glycerol-3-phosphate acyltransferase PlsX YP_001673998.1 2125585 D 458817 CDS YP_001673999.1 167623705 5902744 2126624..2127583 1 NC_010334.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 2127583 5902744 Shal_1775 Shewanella halifaxensis HAW-EB4 3-oxoacyl-ACP synthase YP_001673999.1 2126624 D 458817 CDS YP_001674000.1 167623706 5902745 2127670..2128596 1 NC_010334.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: son:SO_2777 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 2128596 5902745 Shal_1776 Shewanella halifaxensis HAW-EB4 malonyl CoA-acyl carrier protein transacylase YP_001674000.1 2127670 D 458817 CDS YP_001674001.1 167623707 5902805 2128606..2129352 1 NC_010334.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: shw:Sputw3181_2440 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 2129352 5902805 Shal_1777 Shewanella halifaxensis HAW-EB4 3-oxoacyl-(acyl-carrier-protein) reductase YP_001674001.1 2128606 D 458817 CDS YP_001674002.1 167623708 5902806 2129509..2129742 1 NC_010334.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2129742 acpP 5902806 acpP Shewanella halifaxensis HAW-EB4 acyl carrier protein YP_001674002.1 2129509 D 458817 CDS YP_001674003.1 167623709 5903063 2129985..2131223 1 NC_010334.1 PFAM: Beta-ketoacyl synthase; KEGG: shm:Shewmr7_2464 beta-ketoacyl synthase; beta-ketoacyl synthase 2131223 5903063 Shal_1779 Shewanella halifaxensis HAW-EB4 beta-ketoacyl synthase YP_001674003.1 2129985 D 458817 CDS YP_001674004.1 167623710 5903064 2131505..2131873 1 NC_010334.1 KEGG: shm:Shewmr7_2463 hypothetical protein; hypothetical protein 2131873 5903064 Shal_1780 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674004.1 2131505 D 458817 CDS YP_001674005.1 167623711 5902876 2131939..2132430 1 NC_010334.1 PFAM: thioesterase superfamily protein; KEGG: son:SO_2772 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 2132430 5902876 Shal_1781 Shewanella halifaxensis HAW-EB4 thioesterase superfamily protein YP_001674005.1 2131939 D 458817 CDS YP_001674006.1 167623712 5903049 2132568..2133443 1 NC_010334.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: slo:Shew_1609 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase 2133443 5903049 Shal_1782 Shewanella halifaxensis HAW-EB4 6-phosphogluconate dehydrogenase YP_001674006.1 2132568 D 458817 CDS YP_001674007.1 167623713 5903050 complement(2133527..2134417) 1 NC_010334.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2134417 5903050 Shal_1783 Shewanella halifaxensis HAW-EB4 cytidine deaminase YP_001674007.1 2133527 R 458817 CDS YP_001674008.1 167623714 5902630 complement(2134513..2135994) 1 NC_010334.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2135994 sbcB 5902630 sbcB Shewanella halifaxensis HAW-EB4 exonuclease I YP_001674008.1 2134513 R 458817 CDS YP_001674009.1 167623715 5902631 2136220..2137296 1 NC_010334.1 PFAM: integrase family protein; KEGG: shw:Sputw3181_2529 phage integrase family protein; integrase family protein 2137296 5902631 Shal_1785 Shewanella halifaxensis HAW-EB4 integrase family protein YP_001674009.1 2136220 D 458817 CDS YP_001674010.1 167623716 5902931 2137326..2138135 1 NC_010334.1 hypothetical protein 2138135 5902931 Shal_1786 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674010.1 2137326 D 458817 CDS YP_001674011.1 167623717 5902932 complement(2138530..2138886) 1 NC_010334.1 KEGG: pol:Bpro_1735 hypothetical protein; hypothetical protein 2138886 5902932 Shal_1787 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674011.1 2138530 R 458817 CDS YP_001674012.1 167623718 5902893 complement(2138837..2139706) 1 NC_010334.1 KEGG: pfl:PFL_3846 hypothetical protein; restriction endonuclease-like protein 2139706 5902893 Shal_1788 Shewanella halifaxensis HAW-EB4 restriction endonuclease-like protein YP_001674012.1 2138837 R 458817 CDS YP_001674013.1 167623719 5902894 2140046..2141083 1 NC_010334.1 KEGG: pau:PA14_53590 hypothetical protein; hypothetical protein 2141083 5902894 Shal_1789 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674013.1 2140046 D 458817 CDS YP_001674014.1 167623720 5903017 complement(2141818..2142375) 1 NC_010334.1 PFAM: Resolvase domain; KEGG: ppd:Ppro_2582 resolvase, N-terminal domain; resolvase domain-containing protein 2142375 5903017 Shal_1790 Shewanella halifaxensis HAW-EB4 resolvase domain-containing protein YP_001674014.1 2141818 R 458817 CDS YP_001674015.1 167623721 5903018 2142667..2143704 1 NC_010334.1 KEGG: shn:Shewana3_4355 hypothetical protein; hypothetical protein 2143704 5903018 Shal_1791 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674015.1 2142667 D 458817 CDS YP_001674016.1 167623722 5902833 2143701..2145425 1 NC_010334.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: shn:Shewana3_4354 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD-binding protein 2145425 5902833 Shal_1792 Shewanella halifaxensis HAW-EB4 UBA/THIF-type NAD/FAD-binding protein YP_001674016.1 2143701 D 458817 CDS YP_001674017.1 167623723 5902834 2145413..2145886 1 NC_010334.1 KEGG: shn:Shewana3_4353 hypothetical protein; hypothetical protein 2145886 5902834 Shal_1793 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674017.1 2145413 D 458817 CDS YP_001674018.1 167623724 5902990 2145899..2146969 1 NC_010334.1 KEGG: vvu:VV1_2025 2-methylthioadenine synthetase; hypothetical protein 2146969 5902990 Shal_1794 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674018.1 2145899 D 458817 CDS YP_001674019.1 167623725 5903109 complement(2147640..2148377) 1 NC_010334.1 hypothetical protein 2148377 5903109 Shal_1795 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674019.1 2147640 R 458817 CDS YP_001674020.1 167623726 5903110 2149058..2149864 1 NC_010334.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 2149864 rrmA 5903110 rrmA Shewanella halifaxensis HAW-EB4 23S rRNA methyltransferase A YP_001674020.1 2149058 D 458817 CDS YP_001674021.1 167623727 5902644 2150169..2150375 1 NC_010334.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: slo:Shew_1614 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 2150375 5902644 Shal_1797 Shewanella halifaxensis HAW-EB4 cold-shock DNA-binding domain-containing protein YP_001674021.1 2150169 D 458817 CDS YP_001674022.1 167623728 5902645 complement(2150982..2151224) 1 NC_010334.1 hypothetical protein 2151224 5902645 Shal_1798 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674022.1 2150982 R 458817 CDS YP_001674023.1 167623729 5902725 complement(2151356..2152255) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO_1865 ABC transporter, ATP-binding protein; ABC transporter-like protein 2152255 5902725 Shal_1799 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001674023.1 2151356 R 458817 CDS YP_001674024.1 167623730 5902726 complement(2152252..2153061) 1 NC_010334.1 KEGG: sfr:Sfri_1695 ABC-2 type transporter; ABC-2 type transporter 2153061 5902726 Shal_1800 Shewanella halifaxensis HAW-EB4 ABC-2 type transporter YP_001674024.1 2152252 R 458817 CDS YP_001674025.1 167623731 5902686 complement(2153201..2153848) 1 NC_010334.1 PFAM: protein of unknown function DUF480; KEGG: son:SO_1867 hypothetical protein; hypothetical protein 2153848 5902686 Shal_1801 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674025.1 2153201 R 458817 CDS YP_001674026.1 167623732 5902687 complement(2153968..2154801) 1 NC_010334.1 KEGG: slo:Shew_1618 hypothetical protein; hypothetical protein 2154801 5902687 Shal_1802 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674026.1 2153968 R 458817 CDS YP_001674027.1 167623733 5902856 2155434..2157347 1 NC_010334.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 2157347 5902856 Shal_1803 Shewanella halifaxensis HAW-EB4 arginine decarboxylase YP_001674027.1 2155434 D 458817 CDS YP_001674028.1 167623734 5902857 2157562..2158482 1 NC_010334.1 PFAM: S-adenosylmethionine decarboxylase; KEGG: spc:Sputcn32_1648 adenosylmethionine decarboxylase; adenosylmethionine decarboxylase 2158482 5902857 Shal_1804 Shewanella halifaxensis HAW-EB4 adenosylmethionine decarboxylase YP_001674028.1 2157562 D 458817 CDS YP_001674029.1 167623735 5902626 2158507..2159436 1 NC_010334.1 catalyzes the formation of putrescine from agmatine; agmatinase 2159436 5902626 Shal_1805 Shewanella halifaxensis HAW-EB4 agmatinase YP_001674029.1 2158507 D 458817 CDS YP_001674030.1 167623736 5902627 2159583..2160221 1 NC_010334.1 KEGG: sfr:Sfri_1702 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase 2160221 5902627 Shal_1806 Shewanella halifaxensis HAW-EB4 pyridoxamine 5'-phosphate oxidase YP_001674030.1 2159583 D 458817 CDS YP_001674031.1 167623737 5902888 2160449..2161036 1 NC_010334.1 PFAM: YceI family protein; KEGG: shm:Shewmr7_1636 YceI family protein; hypothetical protein 2161036 5902888 Shal_1807 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674031.1 2160449 D 458817 CDS YP_001674032.1 167623738 5903085 2161281..2161634 1 NC_010334.1 KEGG: slo:Shew_2222 hypothetical protein; hypothetical protein 2161634 5903085 Shal_1808 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674032.1 2161281 D 458817 CDS YP_001674033.1 167623739 5903086 2162203..2163078 1 NC_010334.1 PFAM: protein of unknown function DUF785; KEGG: slo:Shew_2219 protein of unknown function DUF785; hypothetical protein 2163078 5903086 Shal_1809 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674033.1 2162203 D 458817 CDS YP_001674034.1 167623740 5904256 complement(2163138..2165786) 1 NC_010334.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; KEGG: she:Shewmr4_1565 multi-sensor signal transduction histidine kinase; putative PAS/PAC sensor protein 2165786 5904256 Shal_1810 Shewanella halifaxensis HAW-EB4 putative PAS/PAC sensor protein YP_001674034.1 2163138 R 458817 CDS YP_001674035.1 167623741 5904257 complement(2166004..2167500) 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: slo:Shew_2217 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2167500 5904257 Shal_1811 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis sensory transducer YP_001674035.1 2166004 R 458817 CDS YP_001674036.1 167623742 5904263 2167940..2168926 1 NC_010334.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2168926 pheS 5904263 pheS Shewanella halifaxensis HAW-EB4 phenylalanyl-tRNA synthetase subunit alpha YP_001674036.1 2167940 D 458817 CDS YP_001674037.1 167623743 5904264 2168943..2171330 1 NC_010334.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2171330 pheT 5904264 pheT Shewanella halifaxensis HAW-EB4 phenylalanyl-tRNA synthetase subunit beta YP_001674037.1 2168943 D 458817 CDS YP_001674038.1 167623744 5904338 2171335..2171631 1 NC_010334.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2171631 ihfA 5904338 ihfA Shewanella halifaxensis HAW-EB4 integration host factor subunit alpha YP_001674038.1 2171335 D 458817 CDS YP_001674039.1 167623745 5904339 2171709..2172647 1 NC_010334.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2172647 5904339 Shal_1815 Shewanella halifaxensis HAW-EB4 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_001674039.1 2171709 D 458817 CDS YP_001674040.1 167623746 5904392 complement(2172758..2173861) 1 NC_010334.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2173861 5904392 Shal_1816 Shewanella halifaxensis HAW-EB4 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001674040.1 2172758 R 458817 CDS YP_001674041.1 167623747 5904393 complement(2174102..2174743) 1 NC_010334.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2174743 5904393 Shal_1817 Shewanella halifaxensis HAW-EB4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_001674041.1 2174102 R 458817 CDS YP_001674042.1 167623748 5904615 complement(2174795..2175568) 1 NC_010334.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2175568 5904615 Shal_1818 Shewanella halifaxensis HAW-EB4 imidazole glycerol phosphate synthase subunit HisF YP_001674042.1 2174795 R 458817 CDS YP_001674043.1 167623749 5904616 complement(2175550..2176287) 1 NC_010334.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2176287 5904616 Shal_1819 Shewanella halifaxensis HAW-EB4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_001674043.1 2175550 R 458817 CDS YP_001674044.1 167623750 5904738 complement(2176287..2177003) 1 NC_010334.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2177003 hisH 5904738 hisH Shewanella halifaxensis HAW-EB4 imidazole glycerol phosphate synthase subunit HisH YP_001674044.1 2176287 R 458817 CDS YP_001674045.1 167623751 5904805 complement(2177000..2178079) 1 NC_010334.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2178079 5904805 Shal_1821 Shewanella halifaxensis HAW-EB4 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_001674045.1 2177000 R 458817 CDS YP_001674046.1 167623752 5904806 complement(2178188..2179321) 1 NC_010334.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2179321 5904806 Shal_1822 Shewanella halifaxensis HAW-EB4 histidinol-phosphate aminotransferase YP_001674046.1 2178188 R 458817 CDS YP_001674047.1 167623753 5904459 complement(2179318..2180676) 1 NC_010334.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2180676 hisD 5904459 hisD Shewanella halifaxensis HAW-EB4 histidinol dehydrogenase YP_001674047.1 2179318 R 458817 CDS YP_001674048.1 167623754 5904460 complement(2180681..2181580) 1 NC_010334.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2181580 hisG 5904460 hisG Shewanella halifaxensis HAW-EB4 ATP phosphoribosyltransferase YP_001674048.1 2180681 R 458817 CDS YP_001674049.1 167623755 5904449 2182232..2184157 1 NC_010334.1 SMART: helicase c2; KEGG: slo:Shew_2196 helicase C2; helicase c2 2184157 5904449 Shal_1825 Shewanella halifaxensis HAW-EB4 helicase c2 YP_001674049.1 2182232 D 458817 CDS YP_001674050.1 167623756 5904450 complement(2184164..2184589) 1 NC_010334.1 hypothetical protein 2184589 5904450 Shal_1826 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674050.1 2184164 R 458817 CDS YP_001674051.1 167623757 5904417 2185310..2186026 1 NC_010334.1 PFAM: peptidase M22 glycoprotease; KEGG: son:SO_2586 hypothetical protein; peptidase M22 glycoprotease 2186026 5904417 Shal_1827 Shewanella halifaxensis HAW-EB4 peptidase M22 glycoprotease YP_001674051.1 2185310 D 458817 CDS YP_001674052.1 167623758 5904418 2186117..2186449 1 NC_010334.1 KEGG: shw:Sputw3181_2268 hypothetical protein; hypothetical protein 2186449 5904418 Shal_1828 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674052.1 2186117 D 458817 CDS YP_001674053.1 167623759 5904326 2186442..2187188 1 NC_010334.1 KEGG: sbm:Shew185_1888 hypothetical protein; hypothetical protein 2187188 5904326 Shal_1829 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674053.1 2186442 D 458817 CDS YP_001674054.1 167623760 5904327 2187309..2188142 1 NC_010334.1 KEGG: slo:Shew_2190 hypothetical protein; hypothetical protein 2188142 5904327 Shal_1830 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674054.1 2187309 D 458817 CDS YP_001674055.1 167623761 5904094 2188151..2189026 1 NC_010334.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO_2582 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein 2189026 5904094 Shal_1831 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase fold protein YP_001674055.1 2188151 D 458817 CDS YP_001674056.1 167623762 5904095 2189213..2190886 1 NC_010334.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2190886 5904095 Shal_1832 Shewanella halifaxensis HAW-EB4 long-chain-fatty-acid--CoA ligase YP_001674056.1 2189213 D 458817 CDS YP_001674057.1 167623763 5903429 2190976..2192085 1 NC_010334.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: she:Shewmr4_2176 ribonuclease D; ribonuclease D 2192085 5903429 Shal_1833 Shewanella halifaxensis HAW-EB4 ribonuclease D YP_001674057.1 2190976 D 458817 CDS YP_001674058.1 167623764 5903430 complement(2192157..2192417) 1 NC_010334.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 2192417 minE 5903430 minE Shewanella halifaxensis HAW-EB4 cell division topological specificity factor MinE YP_001674058.1 2192157 R 458817 CDS YP_001674059.1 167623765 5904162 complement(2192421..2193230) 1 NC_010334.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sfr:Sfri_1736 septum site-determining protein MinD; septum site-determining protein MinD 2193230 5904162 Shal_1835 Shewanella halifaxensis HAW-EB4 septum site-determining protein MinD YP_001674059.1 2192421 R 458817 CDS YP_001674060.1 167623766 5904190 complement(2193259..2193924) 1 NC_010334.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 2193924 minC 5904190 minC Shewanella halifaxensis HAW-EB4 septum formation inhibitor YP_001674060.1 2193259 R 458817 CDS YP_001674061.1 167623767 5904191 2194045..2194326 1 NC_010334.1 PFAM: protein of unknown function DUF709; KEGG: slo:Shew_2183 protein of unknown function DUF709; hypothetical protein 2194326 5904191 Shal_1837 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674061.1 2194045 D 458817 CDS YP_001674062.1 167623768 5904098 2194367..2195362 1 NC_010334.1 TIGRFAM: lytic murein transglycosylase; KEGG: sbl:Sbal_1870 lytic murein transglycosylase; lytic murein transglycosylase 2195362 5904098 Shal_1838 Shewanella halifaxensis HAW-EB4 lytic murein transglycosylase YP_001674062.1 2194367 D 458817 CDS YP_001674063.1 167623769 5904099 2195559..2195999 1 NC_010334.1 PFAM: protein of unknown function UPF0153; KEGG: sbm:Shew185_1898 protein of unknown function UPF0153; hypothetical protein 2195999 5904099 Shal_1839 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674063.1 2195559 D 458817 CDS YP_001674064.1 167623770 5904051 complement(2196097..2196621) 1 NC_010334.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 2196621 5904051 Shal_1840 Shewanella halifaxensis HAW-EB4 disulfide bond formation protein B YP_001674064.1 2196097 R 458817 CDS YP_001674065.1 167623771 5904052 complement(2196700..2198286) 1 NC_010334.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 2198286 nhaB 5904052 nhaB Shewanella halifaxensis HAW-EB4 sodium/proton antiporter YP_001674065.1 2196700 R 458817 CDS YP_001674066.1 167623772 5903775 2198583..2199302 1 NC_010334.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 2199302 5903775 Shal_1842 Shewanella halifaxensis HAW-EB4 fatty acid metabolism regulator YP_001674066.1 2198583 D 458817 CDS YP_001674067.1 167623773 5903776 complement(2199386..2203393) 1 NC_010334.1 PFAM: protein of unknown function DUF490; KEGG: shw:Sputw3181_2112 protein of unknown function DUF490; hypothetical protein 2203393 5903776 Shal_1843 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674067.1 2199386 R 458817 CDS YP_001674068.1 167623774 5904114 complement(2203390..2205237) 1 NC_010334.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: she:Shewmr4_1836 surface antigen (D15); surface antigen (D15) 2205237 5904114 Shal_1844 Shewanella halifaxensis HAW-EB4 surface antigen (D15) YP_001674068.1 2203390 R 458817 CDS YP_001674069.1 167623775 5904115 2205385..2206458 1 NC_010334.1 PFAM: peptidase T2 asparaginase 2; KEGG: slo:Shew_2171 peptidase T2, asparaginase 2; peptidase T2 asparaginase 2 2206458 5904115 Shal_1845 Shewanella halifaxensis HAW-EB4 peptidase T2 asparaginase 2 YP_001674069.1 2205385 D 458817 CDS YP_001674070.1 167623776 5903968 2206614..2206973 1 NC_010334.1 KEGG: vpa:VPA0120 hypothetical protein; hypothetical protein 2206973 5903968 Shal_1846 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674070.1 2206614 D 458817 CDS YP_001674071.1 167623777 5903969 2207268..2207723 1 NC_010334.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 2207723 5903969 Shal_1847 Shewanella halifaxensis HAW-EB4 xanthine-guanine phosphoribosyltransferase YP_001674071.1 2207268 D 458817 CDS YP_001674072.1 167623778 5903725 2207905..2208321 1 NC_010334.1 PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_2139 putative signal transduction protein with CBS domains; signal transduction protein 2208321 5903725 Shal_1848 Shewanella halifaxensis HAW-EB4 signal transduction protein YP_001674072.1 2207905 D 458817 CDS YP_001674073.1 167623779 5903726 complement(2208500..2209681) 1 NC_010334.1 PFAM: Choloylglycine hydrolase; KEGG: sdn:Sden_0442 choloylglycine hydrolase; choloylglycine hydrolase 2209681 5903726 Shal_1849 Shewanella halifaxensis HAW-EB4 choloylglycine hydrolase YP_001674073.1 2208500 R 458817 CDS YP_001674074.1 167623780 5903914 2209861..2210892 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vvu:VV2_1000 FOG: GGDEF domain; diguanylate cyclase 2210892 5903914 Shal_1850 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001674074.1 2209861 D 458817 CDS YP_001674075.1 167623781 5903915 2211358..2215239 1 NC_010334.1 KEGG: slo:Shew_1767 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; ATP-dependent helicase HrpA 2215239 5903915 Shal_1851 Shewanella halifaxensis HAW-EB4 ATP-dependent helicase HrpA YP_001674075.1 2211358 D 458817 CDS YP_001674076.1 167623782 5903800 2215511..2217214 1 NC_010334.1 KEGG: pin:Ping_3169 ABC sugar (glycerol) transporter extracellular solute-binding protein, family 1; sugar ABC transporter extracellular solute-binding family 1 protein 2217214 5903800 Shal_1852 Shewanella halifaxensis HAW-EB4 sugar ABC transporter extracellular solute-binding family 1 protein YP_001674076.1 2215511 D 458817 CDS YP_001674077.1 167623783 5903801 2217201..2218061 1 NC_010334.1 KEGG: hch:HCH_01467 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; hypothetical protein 2218061 5903801 Shal_1853 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674077.1 2217201 D 458817 CDS YP_001674078.1 167623784 5904737 complement(2218082..2219083) 1 NC_010334.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 2219083 ddl 5904737 ddl Shewanella halifaxensis HAW-EB4 D-alanyl-alanine synthetase A YP_001674078.1 2218082 R 458817 CDS YP_001674079.1 167623785 5904605 complement(2219255..2221228) 1 NC_010334.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: slo:Shew_2131 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 2221228 5904605 Shal_1855 Shewanella halifaxensis HAW-EB4 exodeoxyribonuclease V subunit alpha YP_001674079.1 2219255 R 458817 CDS YP_001674080.1 167623786 5904606 complement(2221225..2224947) 1 NC_010334.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: slo:Shew_2130 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 2224947 5904606 Shal_1856 Shewanella halifaxensis HAW-EB4 exodeoxyribonuclease V subunit beta YP_001674080.1 2221225 R 458817 CDS YP_001674081.1 167623787 5903256 complement(2224949..2228722) 1 NC_010334.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: slo:Shew_2129 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 2228722 5903256 Shal_1857 Shewanella halifaxensis HAW-EB4 exodeoxyribonuclease V subunit gamma YP_001674081.1 2224949 R 458817 CDS YP_001674082.1 167623788 5903257 complement(2228781..2230823) 1 NC_010334.1 PFAM: transglutaminase domain protein; KEGG: slo:Shew_2128 transglutaminase domain protein; transglutaminase domain-containing protein 2230823 5903257 Shal_1858 Shewanella halifaxensis HAW-EB4 transglutaminase domain-containing protein YP_001674082.1 2228781 R 458817 CDS YP_001674083.1 167623789 5904549 complement(2230820..2231938) 1 NC_010334.1 PFAM: protein of unknown function DUF58; KEGG: shn:Shewana3_2243 protein of unknown function DUF58; hypothetical protein 2231938 5904549 Shal_1859 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674083.1 2230820 R 458817 CDS YP_001674084.1 167623790 5904550 complement(2232071..2232982) 1 NC_010334.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: slo:Shew_2126 ATPase associated with various cellular activities, AAA_3; ATPase 2232982 5904550 Shal_1860 Shewanella halifaxensis HAW-EB4 ATPase YP_001674084.1 2232071 R 458817 CDS YP_001674085.1 167623791 5904476 complement(2233068..2233805) 1 NC_010334.1 PFAM: EAL domain protein; KEGG: shn:Shewana3_2237 diguanylate phosphodiesterase; diguanylate phosphodiesterase 2233805 5904476 Shal_1861 Shewanella halifaxensis HAW-EB4 diguanylate phosphodiesterase YP_001674085.1 2233068 R 458817 CDS YP_001674086.1 167623792 5904477 complement(2233961..2235850) 1 NC_010334.1 PFAM: Lytic transglycosylase catalytic; KEGG: slo:Shew_2125 lytic transglycosylase, catalytic; lytic transglycosylase 2235850 5904477 Shal_1862 Shewanella halifaxensis HAW-EB4 lytic transglycosylase YP_001674086.1 2233961 R 458817 CDS YP_001674087.1 167623793 5904361 complement(2235970..2237475) 1 NC_010334.1 PFAM: protein of unknown function DUF195; KEGG: shm:Shewmr7_1864 protein of unknown function DUF195; hypothetical protein 2237475 5904361 Shal_1863 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674087.1 2235970 R 458817 CDS YP_001674088.1 167623794 5904362 2237691..2238713 1 NC_010334.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 2238713 5904362 Shal_1864 Shewanella halifaxensis HAW-EB4 putative sulfite oxidase subunit YedY YP_001674088.1 2237691 D 458817 CDS YP_001674089.1 167623795 5904317 2238781..2239434 1 NC_010334.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 2239434 5904317 Shal_1865 Shewanella halifaxensis HAW-EB4 putative sulfite oxidase subunit YedZ YP_001674089.1 2238781 D 458817 CDS YP_001674090.1 167623796 5904318 complement(2239813..2240130) 1 NC_010334.1 KEGG: sbm:Shew185_2006 hypothetical protein; hypothetical protein 2240130 5904318 Shal_1866 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674090.1 2239813 R 458817 CDS YP_001674091.1 167623797 5903451 2240313..2240810 1 NC_010334.1 TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase; KEGG: sbm:Shew185_2007 regulator of ribonuclease activity A; ribonuclease activity A regulator 2240810 5903451 Shal_1867 Shewanella halifaxensis HAW-EB4 ribonuclease activity A regulator YP_001674091.1 2240313 D 458817 CDS YP_001674092.1 167623798 5903452 2240908..2242743 1 NC_010334.1 PFAM: AsmA family protein; KEGG: slo:Shew_2116 AsmA family protein; AsmA family protein 2242743 5903452 Shal_1868 Shewanella halifaxensis HAW-EB4 AsmA family protein YP_001674092.1 2240908 D 458817 CDS YP_001674093.1 167623799 5903664 2242743..2243315 1 NC_010334.1 KEGG: shw:Sputw3181_2251 intracellular proteinase inhibitor domain protein; intracellular proteinase inhibitor domain-containing protein 2243315 5903664 Shal_1869 Shewanella halifaxensis HAW-EB4 intracellular proteinase inhibitor domain-containing protein YP_001674093.1 2242743 D 458817 CDS YP_001674094.1 167623800 5903665 complement(2243452..2245011) 1 NC_010334.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: slo:Shew_2115 lytic transglycosylase, catalytic; lytic transglycosylase 2245011 5903665 Shal_1870 Shewanella halifaxensis HAW-EB4 lytic transglycosylase YP_001674094.1 2243452 R 458817 CDS YP_001674095.1 167623801 5904005 complement(2245112..2245888) 1 NC_010334.1 PFAM: beta-lactamase domain protein; KEGG: sfr:Sfri_2207 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 2245888 5904005 Shal_1871 Shewanella halifaxensis HAW-EB4 hydroxyacylglutathione hydrolase YP_001674095.1 2245112 R 458817 CDS YP_001674096.1 167623802 5904006 2246025..2246765 1 NC_010334.1 PFAM: Methyltransferase type 11; KEGG: sbm:Shew185_2012 methyltransferase type 11; type 11 methyltransferase 2246765 5904006 Shal_1872 Shewanella halifaxensis HAW-EB4 type 11 methyltransferase YP_001674096.1 2246025 D 458817 CDS YP_001674097.1 167623803 5904057 2246805..2247701 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbm:Shew185_2013 transcriptional regulator, LysR family; LysR family transcriptional regulator 2247701 5904057 Shal_1873 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001674097.1 2246805 D 458817 CDS YP_001674098.1 167623804 5904031 complement(2247813..2248298) 1 NC_010334.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2248298 rnhA 5904031 rnhA Shewanella halifaxensis HAW-EB4 ribonuclease H YP_001674098.1 2247813 R 458817 CDS YP_001674099.1 167623805 5904032 2248372..2249100 1 NC_010334.1 KEGG: slo:Shew_2111 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2249100 5904032 Shal_1875 Shewanella halifaxensis HAW-EB4 DNA polymerase III subunit epsilon YP_001674099.1 2248372 D 458817 CDS YP_001674100.1 167623806 5903244 2249111..2250445 1 NC_010334.1 KEGG: saz:Sama_1879 hypothetical protein; hypothetical protein 2250445 5903244 Shal_1876 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674100.1 2249111 D 458817 CDS YP_001674101.1 167623807 5904037 2251460..2253319 1 NC_010334.1 PFAM: sodium/hydrogen exchanger; KEGG: sbm:Shew185_2017 sodium/hydrogen exchanger; sodium/hydrogen exchanger 2253319 5904037 Shal_1877 Shewanella halifaxensis HAW-EB4 sodium/hydrogen exchanger YP_001674101.1 2251460 D 458817 CDS YP_001674102.1 167623808 5903370 2253938..2255041 1 NC_010334.1 KEGG: sec:SC147 hypothetical protein; hypothetical protein 2255041 5903370 Shal_1878 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674102.1 2253938 D 458817 CDS YP_001674103.1 167623809 5903371 2255307..2256353 1 NC_010334.1 PFAM: protein of unknown function DUF1568; KEGG: shm:Shewmr7_1178 protein of unknown function DUF1568; hypothetical protein 2256353 5903371 Shal_1879 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674103.1 2255307 D 458817 CDS YP_001674104.1 167623810 5902984 2256647..2258170 1 NC_010334.1 PFAM: Integrase catalytic region; KEGG: kpn:KPN_pKPN3p05906 Sea24; integrase catalytic subunit 2258170 5902984 Shal_1880 Shewanella halifaxensis HAW-EB4 integrase catalytic subunit YP_001674104.1 2256647 D 458817 CDS YP_001674105.1 167623811 5902985 2258968..2260260 1 NC_010334.1 KEGG: ppr:PBPRB0447 putative serine transporter; putative serine transporter 2260260 5902985 Shal_1881 Shewanella halifaxensis HAW-EB4 putative serine transporter YP_001674105.1 2258968 D 458817 CDS YP_001674106.1 167623812 5902746 2260889..2261263 1 NC_010334.1 hypothetical protein 2261263 5902746 Shal_1882 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674106.1 2260889 D 458817 CDS YP_001674107.1 167623813 5902747 2261260..2261631 1 NC_010334.1 hypothetical protein 2261631 5902747 Shal_1883 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674107.1 2261260 D 458817 CDS YP_001674108.1 167623814 5903246 2262095..2263327 1 NC_010334.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: vha:VIBHAR_02531 hypothetical protein; iron-containing alcohol dehydrogenase 2263327 5903246 Shal_1884 Shewanella halifaxensis HAW-EB4 iron-containing alcohol dehydrogenase YP_001674108.1 2262095 D 458817 CDS YP_001674109.1 167623815 5903247 complement(2263907..2264458) 1 NC_010334.1 PFAM: regulatory protein LysR; KEGG: vha:VIBHAR_05843 hypothetical protein; LysR family transcriptional regulator 2264458 5903247 Shal_1885 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001674109.1 2263907 R 458817 CDS YP_001674110.1 167623816 5903895 2264544..2266208 1 NC_010334.1 PFAM: sulfatase; KEGG: pfl:PFL_0205 arylsulfatase; sulfatase 2266208 5903895 Shal_1886 Shewanella halifaxensis HAW-EB4 sulfatase YP_001674110.1 2264544 D 458817 CDS YP_001674111.1 167623817 5903129 2266256..2267500 1 NC_010334.1 PFAM: Radical SAM domain protein; KEGG: vfi:VF1417 arylsulfatase regulator (Fe-S oxidoreductase); radical SAM domain-containing protein 2267500 5903129 Shal_1887 Shewanella halifaxensis HAW-EB4 radical SAM domain-containing protein YP_001674111.1 2266256 D 458817 CDS YP_001674112.1 167623818 5903130 2267794..2269950 1 NC_010334.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: pin:Ping_2142 catalase/peroxidase HPI; catalase/peroxidase HPI 2269950 5903130 Shal_1888 Shewanella halifaxensis HAW-EB4 catalase/peroxidase HPI YP_001674112.1 2267794 D 458817 CDS YP_001674113.1 167623819 5903714 2270399..2270683 1 NC_010334.1 KEGG: ppr:PBPRB1508 hypothetical protein; hypothetical protein 2270683 5903714 Shal_1889 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674113.1 2270399 D 458817 CDS YP_001674114.1 167623820 5903715 complement(2271270..2273717) 1 NC_010334.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2273717 fadE 5903715 fadE Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase YP_001674114.1 2271270 R 458817 CDS YP_001674115.1 167623821 5904103 2273965..2274750 1 NC_010334.1 PFAM: glutamine amidotransferase class-II; KEGG: slo:Shew_2107 glutamine amidotransferase, class-II; glutamine amidotransferase 2274750 5904103 Shal_1891 Shewanella halifaxensis HAW-EB4 glutamine amidotransferase YP_001674115.1 2273965 D 458817 CDS YP_001674116.1 167623822 5904104 complement(2274853..2275641) 1 NC_010334.1 KEGG: sbm:Shew185_2021 hypothetical protein; hypothetical protein 2275641 5904104 Shal_1892 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674116.1 2274853 R 458817 CDS YP_001674117.1 167623823 5903796 complement(2275799..2276125) 1 NC_010334.1 PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: slo:Shew_2105 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 2276125 5903796 Shal_1893 Shewanella halifaxensis HAW-EB4 methylated-DNA--protein-cysteine methyltransferase YP_001674117.1 2275799 R 458817 CDS YP_001674118.1 167623824 5903797 2276363..2277034 1 NC_010334.1 hypothetical protein 2277034 5903797 Shal_1894 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674118.1 2276363 D 458817 CDS YP_001674119.1 167623825 5902731 complement(2277205..2278926) 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_2104 major facilitator superfamily MFS_1; major facilitator transporter 2278926 5902731 Shal_1895 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001674119.1 2277205 R 458817 CDS YP_001674120.1 167623826 5902732 2279175..2279666 1 NC_010334.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 2279666 def 5902732 def Shewanella halifaxensis HAW-EB4 peptide deformylase YP_001674120.1 2279175 D 458817 CDS YP_001674121.1 167623827 5903043 2279943..2280359 1 NC_010334.1 KEGG: sbl:Sbal_2326 DTW domain containing protein; DTW domain-containing protein 2280359 5903043 Shal_1897 Shewanella halifaxensis HAW-EB4 DTW domain-containing protein YP_001674121.1 2279943 D 458817 CDS YP_001674122.1 167623828 5903044 complement(2280483..2281181) 1 NC_010334.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: sbl:Sbal_2325 channel protein, hemolysin III family; hemolysin III family channel protein 2281181 5903044 Shal_1898 Shewanella halifaxensis HAW-EB4 hemolysin III family channel protein YP_001674122.1 2280483 R 458817 CDS YP_001674123.1 167623829 5904867 2281578..2282543 1 NC_010334.1 KEGG: sbm:Shew185_2324 hypothetical protein; hypothetical protein 2282543 5904867 Shal_1899 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674123.1 2281578 D 458817 CDS YP_001674124.1 167623830 5904868 2282952..2284940 1 NC_010334.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2284940 5904868 Shal_1900 Shewanella halifaxensis HAW-EB4 thiamine biosynthesis protein ThiC YP_001674124.1 2282952 D 458817 CDS YP_001674125.1 167623831 5904655 2284943..2286556 1 NC_010334.1 KEGG: shm:Shewmr7_2096 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; phosphomethylpyrimidine kinase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 2286556 5904655 Shal_1901 Shewanella halifaxensis HAW-EB4 phosphomethylpyrimidine kinase YP_001674125.1 2284943 D 458817 CDS YP_001674126.1 167623832 5904925 2286559..2287446 1 NC_010334.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sbl:Sbal_2024 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD-binding protein 2287446 5904925 Shal_1902 Shewanella halifaxensis HAW-EB4 UBA/THIF-type NAD/FAD-binding protein YP_001674126.1 2286559 D 458817 CDS YP_001674127.1 167623833 5904926 2287485..2287757 1 NC_010334.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: spc:Sputcn32_1925 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 2287757 5904926 Shal_1903 Shewanella halifaxensis HAW-EB4 thiamine biosynthesis protein ThiS YP_001674127.1 2287485 D 458817 CDS YP_001674128.1 167623834 5904708 2287759..2288526 1 NC_010334.1 PFAM: thiazole biosynthesis family protein; KEGG: sfr:Sfri_2197 thiazole biosynthesis family protein; thiazole biosynthesis family protein 2288526 5904708 Shal_1904 Shewanella halifaxensis HAW-EB4 thiazole biosynthesis family protein YP_001674128.1 2287759 D 458817 CDS YP_001674129.1 167623835 5905008 2288551..2289657 1 NC_010334.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2289657 thiH 5905008 thiH Shewanella halifaxensis HAW-EB4 thiamine biosynthesis protein ThiH YP_001674129.1 2288551 D 458817 CDS YP_001674130.1 167623836 5905009 2289747..2290058 1 NC_010334.1 KEGG: son:SO_A0047 hypothetical protein; hypothetical protein 2290058 5905009 Shal_1906 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674130.1 2289747 D 458817 CDS YP_001674131.1 167623837 5905072 complement(2290367..2290729) 1 NC_010334.1 PFAM: response regulator receiver; KEGG: slo:Shew_0703 response regulator receiver protein; response regulator receiver protein 2290729 5905072 Shal_1907 Shewanella halifaxensis HAW-EB4 response regulator receiver protein YP_001674131.1 2290367 R 458817 CDS YP_001674132.1 167623838 5905073 2290987..2291253 1 NC_010334.1 KEGG: saz:Sama_1854 conserved hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 2291253 5905073 Shal_1908 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis protein YP_001674132.1 2290987 D 458817 CDS YP_001674133.1 167623839 5905116 2291392..2293848 1 NC_010334.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ppr:PBPRB1151 hypothetical protein; histidine kinase 2293848 5905116 Shal_1909 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001674133.1 2291392 D 458817 CDS YP_001674134.1 167623840 5905117 complement(2294060..2295046) 1 NC_010334.1 KEGG: slo:Shew_2087 hypothetical protein; hypothetical protein 2295046 5905117 Shal_1910 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674134.1 2294060 R 458817 CDS YP_001674135.1 167623841 5904961 complement(2295090..2296829) 1 NC_010334.1 KEGG: shn:Shewana3_1946 response regulator receiver protein; response regulator receiver protein 2296829 5904961 Shal_1911 Shewanella halifaxensis HAW-EB4 response regulator receiver protein YP_001674135.1 2295090 R 458817 CDS YP_001674136.1 167623842 5904962 complement(2296798..2297748) 1 NC_010334.1 TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: slo:Shew_2085 alpha-L-glutamate ligase-like protein; alpha-L-glutamate ligase-like protein 2297748 5904962 Shal_1912 Shewanella halifaxensis HAW-EB4 alpha-L-glutamate ligase-like protein YP_001674136.1 2296798 R 458817 CDS YP_001674137.1 167623843 5905127 complement(2297748..2299256) 1 NC_010334.1 KEGG: slo:Shew_2084 gonadoliberin III-related protein; gonadoliberin III-like protein 2299256 5905127 Shal_1913 Shewanella halifaxensis HAW-EB4 gonadoliberin III-like protein YP_001674137.1 2297748 R 458817 CDS YP_001674138.1 167623844 5905128 complement(2299268..2300023) 1 NC_010334.1 PFAM: protein of unknown function DUF785; KEGG: slo:Shew_2083 protein of unknown function DUF785; hypothetical protein 2300023 5905128 Shal_1914 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674138.1 2299268 R 458817 CDS YP_001674139.1 167623845 5905029 complement(2300046..2301038) 1 NC_010334.1 TIGRFAM: putative methyltransferase; PFAM: methyltransferase putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_2082 putative methyltransferase; putative methyltransferase 2301038 5905029 Shal_1915 Shewanella halifaxensis HAW-EB4 putative methyltransferase YP_001674139.1 2300046 R 458817 CDS YP_001674140.1 167623846 5905030 complement(2301035..2301766) 1 NC_010334.1 TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_2081 putative methyltransferase; putative methyltransferase 2301766 5905030 Shal_1916 Shewanella halifaxensis HAW-EB4 putative methyltransferase YP_001674140.1 2301035 R 458817 CDS YP_001674141.1 167623847 5904357 2301947..2304727 1 NC_010334.1 KEGG: spc:Sputcn32_1934 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein family 3; diguanylate cyclase 2304727 5904357 Shal_1917 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001674141.1 2301947 D 458817 CDS YP_001674142.1 167623848 5904358 2304898..2306694 1 NC_010334.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2306694 aspS 5904358 aspS Shewanella halifaxensis HAW-EB4 aspartyl-tRNA synthetase YP_001674142.1 2304898 D 458817 CDS YP_001674143.1 167623849 5905348 2306858..2307601 1 NC_010334.1 PFAM: protein of unknown function DUF28; KEGG: slo:Shew_2078 protein of unknown function DUF28; hypothetical protein 2307601 5905348 Shal_1919 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674143.1 2306858 D 458817 CDS YP_001674144.1 167623850 5905349 2307609..2308130 1 NC_010334.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2308130 ruvC 5905349 ruvC Shewanella halifaxensis HAW-EB4 Holliday junction resolvase YP_001674144.1 2307609 D 458817 CDS YP_001674145.1 167623851 5905379 2308127..2308744 1 NC_010334.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2308744 ruvA 5905379 ruvA Shewanella halifaxensis HAW-EB4 Holliday junction DNA helicase RuvA YP_001674145.1 2308127 D 458817 CDS YP_001674146.1 167623852 5905380 2308754..2309767 1 NC_010334.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2309767 ruvB 5905380 ruvB Shewanella halifaxensis HAW-EB4 Holliday junction DNA helicase RuvB YP_001674146.1 2308754 D 458817 CDS YP_001674147.1 167623853 5905365 2310455..2313061 1 NC_010334.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spc:Sputcn32_1940 TonB-dependent receptor; TonB-dependent receptor 2313061 5905365 Shal_1923 Shewanella halifaxensis HAW-EB4 TonB-dependent receptor YP_001674147.1 2310455 D 458817 CDS YP_001674148.1 167623854 5905184 complement(2313136..2313546) 1 NC_010334.1 KEGG: shm:Shewmr7_1867 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2313546 5905184 Shal_1924 Shewanella halifaxensis HAW-EB4 lactoylglutathione lyase YP_001674148.1 2313136 R 458817 CDS YP_001674149.1 167623855 5905185 complement(2313964..2314605) 1 NC_010334.1 KEGG: she:Shewmr4_2070 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 2314605 5905185 Shal_1925 Shewanella halifaxensis HAW-EB4 endonuclease III YP_001674149.1 2313964 R 458817 CDS YP_001674150.1 167623856 5905406 complement(2314726..2315421) 1 NC_010334.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 2315421 5905406 Shal_1926 Shewanella halifaxensis HAW-EB4 electron transport complex protein RsxE YP_001674150.1 2314726 R 458817 CDS YP_001674151.1 167623857 5905407 complement(2315418..2316041) 1 NC_010334.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 2316041 5905407 Shal_1927 Shewanella halifaxensis HAW-EB4 electron transport complex protein RnfG YP_001674151.1 2315418 R 458817 CDS YP_001674152.1 167623858 5903297 complement(2316072..2317124) 1 NC_010334.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 2317124 rnfD 5903297 rnfD Shewanella halifaxensis HAW-EB4 electron transport complex protein RnfD YP_001674152.1 2316072 R 458817 CDS YP_001674153.1 167623859 5903298 complement(2317128..2319560) 1 NC_010334.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2319560 5903298 Shal_1929 Shewanella halifaxensis HAW-EB4 electron transport complex protein RnfC YP_001674153.1 2317128 R 458817 CDS YP_001674154.1 167623860 5905644 complement(2319554..2320123) 1 NC_010334.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2320123 5905644 Shal_1930 Shewanella halifaxensis HAW-EB4 electron transport complex protein RnfB YP_001674154.1 2319554 R 458817 CDS YP_001674155.1 167623861 5905645 complement(2320126..2320704) 1 NC_010334.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: shm:Shewmr7_1911 electron transport complex, RnfABCDGE type, A subunit; Na(+)-translocating NADH-quinone reductase subunit E 2320704 5905645 Shal_1931 Shewanella halifaxensis HAW-EB4 Na(+)-translocating NADH-quinone reductase subunit E YP_001674155.1 2320126 R 458817 CDS YP_001674156.1 167623862 5905603 complement(2320813..2322729) 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: shn:Shewana3_2167 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 2322729 5905603 Shal_1932 Shewanella halifaxensis HAW-EB4 diguanylate cyclase/phosphodiesterase YP_001674156.1 2320813 R 458817 CDS YP_001674157.1 167623863 5906907 2324560..2326563 1 NC_010334.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2326563 5906907 Shal_1933 Shewanella halifaxensis HAW-EB4 excinuclease ABC subunit B YP_001674157.1 2324560 D 458817 CDS YP_001674158.1 167623864 5905957 complement(2326695..2327297) 1 NC_010334.1 PFAM: Rhomboid family protein; KEGG: sbl:Sbal_4542 hypothetical protein; rhomboid family protein 2327297 5905957 Shal_1934 Shewanella halifaxensis HAW-EB4 rhomboid family protein YP_001674158.1 2326695 R 458817 CDS YP_001674159.1 167623865 5906917 complement(2327285..2327974) 1 NC_010334.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: sbl:Sbal_4541 hypothetical protein; exsB protein 2327974 5906917 Shal_1935 Shewanella halifaxensis HAW-EB4 exsB protein YP_001674159.1 2327285 R 458817 CDS YP_001674160.1 167623866 5906918 2328101..2328769 1 NC_010334.1 PFAM: Radical SAM domain protein; KEGG: spc:Sputcn32_1855 radical activating enzyme; radical SAM domain-containing protein 2328769 5906918 Shal_1936 Shewanella halifaxensis HAW-EB4 radical SAM domain-containing protein YP_001674160.1 2328101 D 458817 CDS YP_001674161.1 167623867 5906525 complement(2328866..2329942) 1 NC_010334.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sbm:Shew185_2117 pyridoxal-5'-phosphate-dependent protein beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta 2329942 5906525 Shal_1937 Shewanella halifaxensis HAW-EB4 pyridoxal-5'-phosphate-dependent protein subunit beta YP_001674161.1 2328866 R 458817 CDS YP_001674162.1 167623868 5906925 2331299..2331790 1 NC_010334.1 KEGG: shm:Shewmr7_1918 hypothetical protein; hypothetical protein 2331790 5906925 Shal_1938 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674162.1 2331299 D 458817 CDS YP_001674163.1 167623869 5906880 2331865..2332152 1 NC_010334.1 KEGG: slo:Shew_2058 hypothetical protein; hypothetical protein 2332152 5906880 Shal_1939 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674163.1 2331865 D 458817 CDS YP_001674164.1 167623870 5906827 2332279..2334453 1 NC_010334.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: saz:Sama_1821 putative diguanylate phosphodiesterase; PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase 2334453 5906827 Shal_1940 Shewanella halifaxensis HAW-EB4 PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase YP_001674164.1 2332279 D 458817 CDS YP_001674165.1 167623871 5906828 complement(2334461..2334940) 1 NC_010334.1 KEGG: sbl:Sbal_4535 hypothetical protein; hypothetical protein 2334940 5906828 Shal_1941 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674165.1 2334461 R 458817 CDS YP_001674166.1 167623872 5906769 complement(2334950..2335525) 1 NC_010334.1 KEGG: slo:Shew_2055 hypothetical protein; hypothetical protein 2335525 5906769 Shal_1942 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674166.1 2334950 R 458817 CDS YP_001674167.1 167623873 5906770 2335687..2336277 1 NC_010334.1 PFAM: Smr protein/MutS2; KEGG: she:Shewmr4_2052 Smr protein/MutS2; Smr protein/MutS2 2336277 5906770 Shal_1943 Shewanella halifaxensis HAW-EB4 Smr protein/MutS2 YP_001674167.1 2335687 D 458817 CDS YP_001674168.1 167623874 5906452 complement(2336361..2336540) 1 NC_010334.1 KEGG: slo:Shew_2053 peptidyl-dipeptidase A; hypothetical protein 2336540 5906452 Shal_1944 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674168.1 2336361 R 458817 CDS YP_001674169.1 167623875 5906453 2336584..2337246 1 NC_010334.1 PFAM: regulatory protein TetR; KEGG: slo:Shew_2052 transcriptional regulator, TetR family; TetR family transcriptional regulator 2337246 5906453 Shal_1945 Shewanella halifaxensis HAW-EB4 TetR family transcriptional regulator YP_001674169.1 2336584 D 458817 CDS YP_001674170.1 167623876 5906692 2337252..2339534 1 NC_010334.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2339534 5906692 Shal_1946 Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase YP_001674170.1 2337252 D 458817 CDS YP_001674171.1 167623877 5906693 complement(2339988..2341424) 1 NC_010334.1 KEGG: slo:Shew_2050 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 2341424 5906693 Shal_1947 Shewanella halifaxensis HAW-EB4 pyruvate kinase YP_001674171.1 2339988 R 458817 CDS YP_001674172.1 167623878 5906491 complement(2341609..2342463) 1 NC_010334.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2342463 5906491 Shal_1948 Shewanella halifaxensis HAW-EB4 DNA-binding transcriptional regulator HexR YP_001674172.1 2341609 R 458817 CDS YP_001674173.1 167623879 5906492 2342777..2344249 1 NC_010334.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2344249 5906492 Shal_1949 Shewanella halifaxensis HAW-EB4 glucose-6-phosphate 1-dehydrogenase YP_001674173.1 2342777 D 458817 CDS YP_001674174.1 167623880 5906143 2344260..2344964 1 NC_010334.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: slo:Shew_2047 6-phosphogluconolactonase; 6-phosphogluconolactonase 2344964 5906143 Shal_1950 Shewanella halifaxensis HAW-EB4 6-phosphogluconolactonase YP_001674174.1 2344260 D 458817 CDS YP_001674175.1 167623881 5906144 2344974..2346800 1 NC_010334.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2346800 5906144 Shal_1951 Shewanella halifaxensis HAW-EB4 phosphogluconate dehydratase YP_001674175.1 2344974 D 458817 CDS YP_001674176.1 167623882 5906315 2346822..2347469 1 NC_010334.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 2347469 5906315 Shal_1952 Shewanella halifaxensis HAW-EB4 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_001674176.1 2346822 D 458817 CDS YP_001674177.1 167623883 5906316 complement(2347560..2348141) 1 NC_010334.1 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2348141 5906316 Shal_1953 Shewanella halifaxensis HAW-EB4 ecotin YP_001674177.1 2347560 R 458817 CDS YP_001674178.1 167623884 5906272 2348562..2349581 1 NC_010334.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: spc:Sputcn32_2100 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 2349581 5906272 Shal_1954 Shewanella halifaxensis HAW-EB4 cation diffusion facilitator family transporter YP_001674178.1 2348562 D 458817 CDS YP_001674179.1 167623885 5906273 2349608..2350027 1 NC_010334.1 PFAM: regulatory protein MarR; KEGG: sbm:Shew185_2256 transcriptional regulator, MarR family; MarR family transcriptional regulator 2350027 5906273 Shal_1955 Shewanella halifaxensis HAW-EB4 MarR family transcriptional regulator YP_001674179.1 2349608 D 458817 CDS YP_001674180.1 167623886 5906160 2350361..2351980 1 NC_010334.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: she:Shewmr4_2103 sulfatase; sulfatase 2351980 5906160 Shal_1956 Shewanella halifaxensis HAW-EB4 sulfatase YP_001674180.1 2350361 D 458817 CDS YP_001674181.1 167623887 5906182 2352073..2353125 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_2040 diguanylate cyclase; diguanylate cyclase 2353125 5906182 Shal_1957 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001674181.1 2352073 D 458817 CDS YP_001674182.1 167623888 5906183 complement(2353249..2355951) 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: slo:Shew_2039 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2355951 5906183 Shal_1958 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001674182.1 2353249 R 458817 CDS YP_001674183.1 167623889 5906148 2356544..2357206 1 NC_010334.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pat:Patl_1418 transcriptional regulator, GntR family; GntR family transcriptional regulator 2357206 5906148 Shal_1960 Shewanella halifaxensis HAW-EB4 GntR family transcriptional regulator YP_001674183.1 2356544 D 458817 CDS YP_001674184.1 167623890 5906028 2357314..2358192 1 NC_010334.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 2358192 prpB 5906028 prpB Shewanella halifaxensis HAW-EB4 2-methylisocitrate lyase YP_001674184.1 2357314 D 458817 CDS YP_001674185.1 167623891 5906029 2358371..2359510 1 NC_010334.1 KEGG: slo:Shew_1821 2-methylcitrate synthase/citrate synthase II; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; 2-methylcitrate synthase/citrate synthase II 2359510 5906029 Shal_1962 Shewanella halifaxensis HAW-EB4 2-methylcitrate synthase/citrate synthase II YP_001674185.1 2358371 D 458817 CDS YP_001674186.1 167623892 5906026 2359812..2362445 1 NC_010334.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2362445 5906026 Shal_1963 Shewanella halifaxensis HAW-EB4 aconitate hydratase YP_001674186.1 2359812 D 458817 CDS YP_001674187.1 167623893 5906027 2362693..2363928 1 NC_010334.1 TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: pen:PSEEN1906 hypothetical protein; putative AcnD-accessory protein PrpF 2363928 5906027 Shal_1964 Shewanella halifaxensis HAW-EB4 putative AcnD-accessory protein PrpF YP_001674187.1 2362693 D 458817 CDS YP_001674188.1 167623894 5904704 2364469..2364771 1 NC_010334.1 PFAM: protein of unknown function UPF0153; KEGG: cps:CPS_2552 hypothetical protein; hypothetical protein 2364771 5904704 Shal_1965 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674188.1 2364469 D 458817 CDS YP_001674189.1 167623895 5904705 2365168..2365962 1 NC_010334.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sbl:Sbal_2119 methyltransferase type 12; type 11 methyltransferase 2365962 5904705 Shal_1966 Shewanella halifaxensis HAW-EB4 type 11 methyltransferase YP_001674189.1 2365168 D 458817 CDS YP_001674190.1 167623896 5907051 2365959..2367083 1 NC_010334.1 SMART: HNH nuclease; KEGG: sbm:Shew185_2239 HNH nuclease; HNH nuclease 2367083 5907051 Shal_1967 Shewanella halifaxensis HAW-EB4 HNH nuclease YP_001674190.1 2365959 D 458817 CDS YP_001674191.1 167623897 5907052 complement(2367100..2369559) 1 NC_010334.1 KEGG: pin:Ping_0512 PKD domain containing protein; hypothetical protein 2369559 5907052 Shal_1968 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674191.1 2367100 R 458817 CDS YP_001674192.1 167623898 5903333 complement(2369896..2370954) 1 NC_010334.1 PFAM: regulatory protein LuxR; KEGG: ppr:PBPRB1591 hypothetical protein; LuxR family transcriptional regulator 2370954 5903333 Shal_1969 Shewanella halifaxensis HAW-EB4 LuxR family transcriptional regulator YP_001674192.1 2369896 R 458817 CDS YP_001674193.1 167623899 5903334 2371166..2372146 1 NC_010334.1 PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein 2372146 5903334 Shal_1970 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674193.1 2371166 D 458817 CDS YP_001674194.1 167623900 5905015 complement(2372524..2373093) 1 NC_010334.1 KEGG: sfr:Sfri_2082 hypothetical protein; hypothetical protein 2373093 5905015 Shal_1971 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674194.1 2372524 R 458817 CDS YP_001674195.1 167623901 5905016 complement(2373156..2373374) 1 NC_010334.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: pat:Patl_0965 putative signal transduction protein with EFhand domain; signal transduction protein 2373374 5905016 Shal_1972 Shewanella halifaxensis HAW-EB4 signal transduction protein YP_001674195.1 2373156 R 458817 CDS YP_001674196.1 167623902 5905621 complement(2373647..2374240) 1 NC_010334.1 PFAM: regulatory protein TetR; KEGG: vfi:VFA0359 transcriptional regulator, TetR family; TetR family transcriptional regulator 2374240 5905621 Shal_1973 Shewanella halifaxensis HAW-EB4 TetR family transcriptional regulator YP_001674196.1 2373647 R 458817 CDS YP_001674197.1 167623903 5905622 2374460..2375581 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: vfi:VFA0358 acriflavin resistance periplasmic protein; RND family efflux transporter MFP subunit 2375581 5905622 Shal_1974 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001674197.1 2374460 D 458817 CDS YP_001674198.1 167623904 5905871 2375585..2378638 1 NC_010334.1 PFAM: acriflavin resistance protein; KEGG: vfi:VFA0357 acriflavin resistance plasma membrane protein; acriflavin resistance protein 2378638 5905871 Shal_1975 Shewanella halifaxensis HAW-EB4 acriflavin resistance protein YP_001674198.1 2375585 D 458817 CDS YP_001674199.1 167623905 5903438 complement(2378728..2381013) 1 NC_010334.1 PFAM: von Willebrand factor type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: mxa:MXAN_0776 von Willebrand factor type A domain protein; vault protein inter-alpha-trypsin subunit 2381013 5903438 Shal_1976 Shewanella halifaxensis HAW-EB4 vault protein inter-alpha-trypsin subunit YP_001674199.1 2378728 R 458817 CDS YP_001674200.1 167623906 5903439 complement(2381016..2381438) 1 NC_010334.1 PFAM: regulatory protein MerR; KEGG: shn:Shewana3_1805 transcriptional regulator, MerR family; MerR family transcriptional regulator 2381438 5903439 Shal_1977 Shewanella halifaxensis HAW-EB4 MerR family transcriptional regulator YP_001674200.1 2381016 R 458817 CDS YP_001674201.1 167623907 5904848 2381619..2381915 1 NC_010334.1 hypothetical protein 2381915 5904848 Shal_1978 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674201.1 2381619 D 458817 CDS YP_001674202.1 167623908 5904849 complement(2382212..2384032) 1 NC_010334.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: saz:Sama_1876 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 2384032 5904849 Shal_1979 Shewanella halifaxensis HAW-EB4 peptidase S8/S53 subtilisin kexin sedolisin YP_001674202.1 2382212 R 458817 CDS YP_001674203.1 167623909 5904574 complement(2384390..2385058) 1 NC_010334.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: saz:Sama_1873 response regulator receiver protein; two component LuxR family transcriptional regulator 2385058 5904574 Shal_1980 Shewanella halifaxensis HAW-EB4 two component LuxR family transcriptional regulator YP_001674203.1 2384390 R 458817 CDS YP_001674204.1 167623910 5904575 complement(2385051..2388257) 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; Two component regulator propeller; histidine kinase dimerisation and phosphoacceptor region; KEGG: saz:Sama_1872 sensor histidine kinase; histidine kinase 2388257 5904575 Shal_1981 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001674204.1 2385051 R 458817 CDS YP_001674205.1 167623911 5905490 2388507..2389136 1 NC_010334.1 KEGG: saz:Sama_1874 hypothetical protein; hypothetical protein 2389136 5905490 Shal_1982 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674205.1 2388507 D 458817 CDS YP_001674206.1 167623912 5905491 2389136..2391577 1 NC_010334.1 KEGG: saz:Sama_1875 hypothetical protein; hypothetical protein 2391577 5905491 Shal_1983 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674206.1 2389136 D 458817 CDS YP_001674207.1 167623913 5904651 complement(2392284..2392949) 1 NC_010334.1 PFAM: Glutathione S-transferase domain; KEGG: rle:RL0881 putative glutathione S-transferase; glutathione S-transferase domain-containing protein 2392949 5904651 Shal_1984 Shewanella halifaxensis HAW-EB4 glutathione S-transferase domain-containing protein YP_001674207.1 2392284 R 458817 CDS YP_001674208.1 167623914 5904652 complement(2393011..2393568) 1 NC_010334.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: vha:VIBHAR_05274 hypothetical protein; NAD(P)H dehydrogenase (quinone) 2393568 5904652 Shal_1985 Shewanella halifaxensis HAW-EB4 NAD(P)H dehydrogenase (quinone) YP_001674208.1 2393011 R 458817 CDS YP_001674209.1 167623915 5905123 2394606..2394956 1 NC_010334.1 TIGRFAM: Phasin family protein; KEGG: ppr:PBPRB1839 hypothetical protein; phasin family protein 2394956 5905123 Shal_1986 Shewanella halifaxensis HAW-EB4 phasin family protein YP_001674209.1 2394606 D 458817 CDS YP_001674210.1 167623916 5905124 2395051..2396808 1 NC_010334.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: ppr:PBPRB0352 putative polyhydroxyalkanoic acid synthase; poly(R)-hydroxyalkanoic acid synthase 2396808 5905124 Shal_1987 Shewanella halifaxensis HAW-EB4 poly(R)-hydroxyalkanoic acid synthase YP_001674210.1 2395051 D 458817 CDS YP_001674211.1 167623917 5904478 2396798..2397199 1 NC_010334.1 PFAM: MaoC domain protein dehydratase; KEGG: aha:AHA_2422 enoyl-CoA hydratase; dehydratase 2397199 5904478 Shal_1988 Shewanella halifaxensis HAW-EB4 dehydratase YP_001674211.1 2396798 D 458817 CDS YP_001674212.1 167623918 5904479 2397820..2398038 1 NC_010334.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: pat:Patl_0965 putative signal transduction protein with EFhand domain; signal transduction protein 2398038 5904479 Shal_1989 Shewanella halifaxensis HAW-EB4 signal transduction protein YP_001674212.1 2397820 D 458817 CDS YP_001674213.1 167623919 5904334 2398726..2399724 1 NC_010334.1 KEGG: dar:Daro_1033 hypothetical protein; hypothetical protein 2399724 5904334 Shal_1990 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674213.1 2398726 D 458817 CDS YP_001674214.1 167623920 5904335 complement(2399933..2401618) 1 NC_010334.1 PFAM: glutathione synthase; glutathione synthase ATP-binding; KEGG: shw:Sputw3181_2944 glutathione synthase; glutathione synthase 2401618 5904335 Shal_1991 Shewanella halifaxensis HAW-EB4 glutathione synthase YP_001674214.1 2399933 R 458817 CDS YP_001674215.1 167623921 5905217 2402239..2402655 1 NC_010334.1 KEGG: pha:PSHAa1559 hypothetical protein; hypothetical protein 2402655 5905217 Shal_1992 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674215.1 2402239 D 458817 CDS YP_001674216.1 167623922 5905218 complement(2402804..2403886) 1 NC_010334.1 PFAM: protein of unknown function UPF0118; KEGG: vfi:VF2136 hypothetical membrane spanning protein; hypothetical protein 2403886 5905218 Shal_1993 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674216.1 2402804 R 458817 CDS YP_001674217.1 167623923 5904774 2404817..2406064 1 NC_010334.1 KEGG: son:SO_A0050 toxin secretion, membrane fusion protein; toxin secretion, membrane fusion protein 2406064 5904774 Shal_1994 Shewanella halifaxensis HAW-EB4 toxin secretion, membrane fusion protein YP_001674217.1 2404817 D 458817 CDS YP_001674218.1 167623924 5905283 complement(2409470..2410288) 1 NC_010334.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3311 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 2410288 5905283 Shal_1998 Shewanella halifaxensis HAW-EB4 transposase IS116/IS110/IS902 family protein YP_001674218.1 2409470 R 458817 CDS YP_001674219.1 167623925 5906111 2410372..2411352 1 NC_010334.1 PFAM: protein of unknown function DUF1568; KEGG: pin:Ping_3091 hypothetical protein DUF1568; hypothetical protein 2411352 5906111 Shal_1999 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674219.1 2410372 D 458817 CDS YP_001674220.1 167623926 5906112 complement(2411720..2412061) 1 NC_010334.1 hypothetical protein 2412061 5906112 Shal_2000 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674220.1 2411720 R 458817 CDS YP_001674221.1 167623927 5906349 2412426..2415467 1 NC_010334.1 PFAM: UvrD/REP helicase; DNA topoisomerase type IA zn finger domain protein; KEGG: sfr:Sfri_0452 UvrD/REP helicase; UvrD/REP helicase 2415467 5906349 Shal_2001 Shewanella halifaxensis HAW-EB4 UvrD/REP helicase YP_001674221.1 2412426 D 458817 CDS YP_001674222.1 167623928 5906350 complement(2415479..2415748) 1 NC_010334.1 hypothetical protein 2415748 5906350 Shal_2002 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674222.1 2415479 R 458817 CDS YP_001674223.1 167623929 5904609 2415867..2417861 1 NC_010334.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2417861 5904609 Shal_2003 Shewanella halifaxensis HAW-EB4 excinuclease ABC subunit B YP_001674223.1 2415867 D 458817 CDS YP_001674224.1 167623930 5904610 2418058..2418903 1 NC_010334.1 PFAM: phospholipase A1; KEGG: vha:VIBHAR_02841 hypothetical protein; phospholipase A1 2418903 5904610 Shal_2004 Shewanella halifaxensis HAW-EB4 phospholipase A1 YP_001674224.1 2418058 D 458817 CDS YP_001674225.1 167623931 5904842 2418903..2419556 1 NC_010334.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: vfi:VFA0790 chloramphenicol acetyltransferase; hexapaptide repeat-containing transferase 2419556 5904842 Shal_2005 Shewanella halifaxensis HAW-EB4 hexapaptide repeat-containing transferase YP_001674225.1 2418903 D 458817 CDS YP_001674226.1 167623932 5904843 complement(2419642..2421252) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRA1657 putative Uup, ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter-like protein 2421252 5904843 Shal_2006 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001674226.1 2419642 R 458817 CDS YP_001674227.1 167623933 5906206 complement(2421515..2422504) 1 NC_010334.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: hch:HCH_02466 transcriptional regulator; LacI family transcriptional regulator 2422504 5906206 Shal_2007 Shewanella halifaxensis HAW-EB4 LacI family transcriptional regulator YP_001674227.1 2421515 R 458817 CDS YP_001674228.1 167623934 5906207 2422839..2423873 1 NC_010334.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: plu:plu1960 hypothetical protein; alcohol dehydrogenase 2423873 5906207 Shal_2008 Shewanella halifaxensis HAW-EB4 alcohol dehydrogenase YP_001674228.1 2422839 D 458817 CDS YP_001674229.1 167623935 5906533 2423877..2425424 1 NC_010334.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: mmw:Mmwyl1_1989 xylulokinase; xylulokinase 2425424 5906533 Shal_2009 Shewanella halifaxensis HAW-EB4 xylulokinase YP_001674229.1 2423877 D 458817 CDS YP_001674230.1 167623936 5906534 2425417..2426901 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgl:SG0612 sugar ABC transporter ATP-binding component; ABC transporter-like protein 2426901 5906534 Shal_2010 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001674230.1 2425417 D 458817 CDS YP_001674231.1 167623937 5905734 2426911..2427948 1 NC_010334.1 PFAM: inner-membrane translocator; KEGG: ypi:YpsIP31758_0911 ribose ABC transporter, permease protein; monosaccharide-transporting ATPase 2427948 5905734 Shal_2011 Shewanella halifaxensis HAW-EB4 monosaccharide-transporting ATPase YP_001674231.1 2426911 D 458817 CDS YP_001674232.1 167623938 5905735 2428018..2429019 1 NC_010334.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rru:Rru_A0247 periplasmic binding protein/LacI transcriptional regulator; periplasmic-binding protein/LacI transcriptional regulator 2429019 5905735 Shal_2012 Shewanella halifaxensis HAW-EB4 periplasmic-binding protein/LacI transcriptional regulator YP_001674232.1 2428018 D 458817 CDS YP_001674233.1 167623939 5905525 complement(2429069..2429593) 1 NC_010334.1 KEGG: bld:BLi00510 YdaE; hypothetical protein 2429593 5905525 Shal_2013 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674233.1 2429069 R 458817 CDS YP_001674234.1 167623940 5905526 2429988..2430485 1 NC_010334.1 KEGG: sfr:Sfri_0770 hypothetical protein; hypothetical protein 2430485 5905526 Shal_2014 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674234.1 2429988 D 458817 CDS YP_001674235.1 167623941 5903806 2433000..2433377 1 NC_010334.1 KEGG: vvy:VV3212 hypothetical protein; hypothetical protein 2433377 5903806 Shal_2015 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674235.1 2433000 D 458817 CDS YP_001674236.1 167623942 5904136 complement(2433859..2435217) 1 NC_010334.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: slo:Shew_2037 MATE efflux family protein; MATE efflux family protein 2435217 5904136 Shal_2016 Shewanella halifaxensis HAW-EB4 MATE efflux family protein YP_001674236.1 2433859 R 458817 CDS YP_001674237.1 167623943 5904042 2435250..2435867 1 NC_010334.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2435867 5904042 Shal_2017 Shewanella halifaxensis HAW-EB4 riboflavin synthase subunit alpha YP_001674237.1 2435250 D 458817 CDS YP_001674238.1 167623944 5904043 complement(2435920..2436120) 1 NC_010334.1 KEGG: shn:Shewana3_2041 hypothetical protein; hypothetical protein 2436120 5904043 Shal_2018 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674238.1 2435920 R 458817 CDS YP_001674239.1 167623945 5903854 complement(2436123..2436875) 1 NC_010334.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: saz:Sama_1764 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2436875 5903854 Shal_2019 Shewanella halifaxensis HAW-EB4 short-chain dehydrogenase/reductase SDR YP_001674239.1 2436123 R 458817 CDS YP_001674240.1 167623946 5903855 2437381..2439309 1 NC_010334.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2439309 5903855 Shal_2020 Shewanella halifaxensis HAW-EB4 threonyl-tRNA synthetase YP_001674240.1 2437381 D 458817 CDS YP_001674241.1 167623947 5903474 2439427..2439855 1 NC_010334.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: saz:Sama_1766 translation initiation factor IF-3; translation initiation factor IF-3 2439855 5903474 Shal_2021 Shewanella halifaxensis HAW-EB4 translation initiation factor IF-3 YP_001674241.1 2439427 D 458817 CDS YP_001674242.1 167623948 5903475 2439942..2440136 1 NC_010334.1 PFAM: ribosomal protein L35; KEGG: slo:Shew_2030 ribosomal protein L35; 50S ribosomal protein L35 2440136 rpmI 5903475 rpmI Shewanella halifaxensis HAW-EB4 50S ribosomal protein L35 YP_001674242.1 2439942 D 458817 CDS YP_001674243.1 167623949 5903590 2440155..2440514 1 NC_010334.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2440514 rplT 5903590 rplT Shewanella halifaxensis HAW-EB4 50S ribosomal protein L20 YP_001674243.1 2440155 D 458817 CDS YP_001674244.1 167623950 5903591 complement(2440827..2441780) 1 NC_010334.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_2028 thioredoxin reductase; thioredoxin reductase 2441780 5903591 Shal_2024 Shewanella halifaxensis HAW-EB4 thioredoxin reductase YP_001674244.1 2440827 R 458817 CDS YP_001674245.1 167623951 5903638 2442071..2443198 1 NC_010334.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: slo:Shew_1937 peptidase M14, carboxypeptidase A; peptidase M14 carboxypeptidase A 2443198 5903638 Shal_2025 Shewanella halifaxensis HAW-EB4 peptidase M14 carboxypeptidase A YP_001674245.1 2442071 D 458817 CDS YP_001674246.1 167623952 5903639 2443227..2443544 1 NC_010334.1 KEGG: slo:Shew_1938 hypothetical protein; hypothetical protein 2443544 5903639 Shal_2026 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674246.1 2443227 D 458817 CDS YP_001674247.1 167623953 5904388 2443541..2443822 1 NC_010334.1 PFAM: protein of unknown function DUF1315; KEGG: slo:Shew_1939 protein of unknown function DUF1315; hypothetical protein 2443822 5904388 Shal_2027 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674247.1 2443541 D 458817 CDS YP_001674248.1 167623954 5904389 complement(2443893..2444909) 1 NC_010334.1 converts asparagine to aspartate and ammonia; asparaginase 2444909 ansA 5904389 ansA Shewanella halifaxensis HAW-EB4 asparaginase YP_001674248.1 2443893 R 458817 CDS YP_001674249.1 167623955 5904701 complement(2445141..2446982) 1 NC_010334.1 KEGG: slo:Shew_1941 signal peptide peptidase SppA, 67K type; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA 2446982 5904701 Shal_2029 Shewanella halifaxensis HAW-EB4 signal peptide peptidase SppA YP_001674249.1 2445141 R 458817 CDS YP_001674250.1 167623956 5904702 2447138..2449153 1 NC_010334.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_1910 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 2449153 5904702 Shal_2030 Shewanella halifaxensis HAW-EB4 NADH:flavin oxidoreductase YP_001674250.1 2447138 D 458817 CDS YP_001674251.1 167623957 5904340 complement(2449299..2450432) 1 NC_010334.1 PFAM: phosphatidylserine decarboxylase-related; KEGG: pmf:P9303_20791 hypothetical protein; phosphatidylserine decarboxylase 2450432 5904340 Shal_2031 Shewanella halifaxensis HAW-EB4 phosphatidylserine decarboxylase YP_001674251.1 2449299 R 458817 CDS YP_001674252.1 167623958 5904341 2451026..2451388 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: vfi:VF1977 protein YgiW precursor; hypothetical protein 2451388 5904341 Shal_2032 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674252.1 2451026 D 458817 CDS YP_001674253.1 167623959 5904837 complement(2451592..2452482) 1 NC_010334.1 KEGG: sfr:Sfri_2116 hypothetical protein; hypothetical protein 2452482 5904837 Shal_2033 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674253.1 2451592 R 458817 CDS YP_001674254.1 167623960 5903408 complement(2452784..2453167) 1 NC_010334.1 PFAM: ferredoxin; KEGG: slo:Shew_1944 ferredoxin; ferredoxin 2453167 5903408 Shal_2034 Shewanella halifaxensis HAW-EB4 ferredoxin YP_001674254.1 2452784 R 458817 CDS YP_001674255.1 167623961 5903409 complement(2453136..2454266) 1 NC_010334.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2454266 nrdB 5903409 nrdB Shewanella halifaxensis HAW-EB4 ribonucleotide-diphosphate reductase subunit beta YP_001674255.1 2453136 R 458817 CDS YP_001674256.1 167623962 5903462 complement(2454338..2456626) 1 NC_010334.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2456626 5903462 Shal_2036 Shewanella halifaxensis HAW-EB4 ribonucleotide-diphosphate reductase subunit alpha YP_001674256.1 2454338 R 458817 CDS YP_001674257.1 167623963 5903463 complement(2457096..2457773) 1 NC_010334.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfr:Sfri_2132 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 2457773 5903463 Shal_2037 Shewanella halifaxensis HAW-EB4 HAD family hydrolase YP_001674257.1 2457096 R 458817 CDS YP_001674258.1 167623964 5905236 complement(2457766..2458476) 1 NC_010334.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2458476 5905236 Shal_2038 Shewanella halifaxensis HAW-EB4 3-demethylubiquinone-9 3-methyltransferase YP_001674258.1 2457766 R 458817 CDS YP_001674259.1 167623965 5905237 2458757..2461483 1 NC_010334.1 KEGG: sfr:Sfri_2130 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 2461483 5905237 Shal_2039 Shewanella halifaxensis HAW-EB4 DNA gyrase subunit A YP_001674259.1 2458757 D 458817 CDS YP_001674260.1 167623966 5905049 complement(2461611..2462768) 1 NC_010334.1 PFAM: beta-lactamase; KEGG: slo:Shew_1968 beta-lactamase; beta-lactamase 2462768 5905049 Shal_2040 Shewanella halifaxensis HAW-EB4 beta-lactamase YP_001674260.1 2461611 R 458817 CDS YP_001674261.1 167623967 5905050 2463191..2464282 1 NC_010334.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2464282 5905050 Shal_2041 Shewanella halifaxensis HAW-EB4 phosphoserine aminotransferase YP_001674261.1 2463191 D 458817 CDS YP_001674262.1 167623968 5905200 complement(2464385..2465620) 1 NC_010334.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2465620 5905200 Shal_2042 Shewanella halifaxensis HAW-EB4 aromatic amino acid aminotransferase YP_001674262.1 2464385 R 458817 CDS YP_001674263.1 167623969 5905201 2466009..2467289 1 NC_010334.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2467289 5905201 Shal_2043 Shewanella halifaxensis HAW-EB4 3-phosphoshikimate 1-carboxyvinyltransferase YP_001674263.1 2466009 D 458817 CDS YP_001674264.1 167623970 5905811 2467469..2468161 1 NC_010334.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2468161 cmk 5905811 cmk Shewanella halifaxensis HAW-EB4 cytidylate kinase YP_001674264.1 2467469 D 458817 CDS YP_001674265.1 167623971 5905812 2468259..2469926 1 NC_010334.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2469926 rpsA 5905812 rpsA Shewanella halifaxensis HAW-EB4 30S ribosomal protein S1 YP_001674265.1 2468259 D 458817 CDS YP_001674266.1 167623972 5905860 2469999..2470286 1 NC_010334.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2470286 ihfB 5905860 ihfB Shewanella halifaxensis HAW-EB4 integration host factor subunit beta YP_001674266.1 2469999 D 458817 CDS YP_001674267.1 167623973 5905861 2470397..2470729 1 NC_010334.1 PFAM: protein of unknown function DUF1049; KEGG: slo:Shew_1956 protein of unknown function DUF1049; hypothetical protein 2470729 5905861 Shal_2047 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674267.1 2470397 D 458817 CDS YP_001674268.1 167623974 5906751 2470731..2471891 1 NC_010334.1 KEGG: slo:Shew_1957 hypothetical protein; hypothetical protein 2471891 5906751 Shal_2048 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674268.1 2470731 D 458817 CDS YP_001674269.1 167623975 5906752 2471958..2472653 1 NC_010334.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2472653 5906752 Shal_2049 Shewanella halifaxensis HAW-EB4 orotidine 5'-phosphate decarboxylase YP_001674269.1 2471958 D 458817 CDS YP_001674270.1 167623976 5905469 2472729..2473535 1 NC_010334.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbm:Shew185_2274 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2473535 5905469 Shal_2050 Shewanella halifaxensis HAW-EB4 short chain dehydrogenase YP_001674270.1 2472729 D 458817 CDS YP_001674271.1 167623977 5905470 2473597..2474139 1 NC_010334.1 KEGG: slo:Shew_1960 hypothetical protein; hypothetical protein 2474139 5905470 Shal_2051 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674271.1 2473597 D 458817 CDS YP_001674272.1 167623978 5906753 2474377..2474727 1 NC_010334.1 PFAM: protein of unknown function DUF486; KEGG: vco:VC0395_A1178 hypothetical protein; hypothetical protein 2474727 5906753 Shal_2052 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674272.1 2474377 D 458817 CDS YP_001674273.1 167623979 5906399 complement(2474892..2475839) 1 NC_010334.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: shm:Shewmr7_1720 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 2475839 5906399 Shal_2053 Shewanella halifaxensis HAW-EB4 magnesium and cobalt transport protein CorA YP_001674273.1 2474892 R 458817 CDS YP_001674274.1 167623980 5906400 2476171..2477931 1 NC_010334.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sbm:Shew185_2272 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2477931 5906400 Shal_2054 Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase domain-containing protein YP_001674274.1 2476171 D 458817 CDS YP_001674275.1 167623981 5906016 complement(2478080..2479510) 1 NC_010334.1 KEGG: slo:Shew_1962 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 2479510 5906016 Shal_2055 Shewanella halifaxensis HAW-EB4 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_001674275.1 2478080 R 458817 CDS YP_001674276.1 167623982 5906017 complement(2479549..2479725) 1 NC_010334.1 KEGG: sbl:Sbal_2079 hypothetical protein; hypothetical protein 2479725 5906017 Shal_2056 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674276.1 2479549 R 458817 CDS YP_001674277.1 167623983 5905932 2479978..2480310 1 NC_010334.1 PFAM: Domain of unknown function DUF1904; KEGG: slo:Shew_1964 hypothetical protein; hypothetical protein 2480310 5905932 Shal_2057 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674277.1 2479978 D 458817 CDS YP_001674278.1 167623984 5905933 2480294..2481634 1 NC_010334.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2481634 pssA 5905933 pssA Shewanella halifaxensis HAW-EB4 phosphatidylserine synthase YP_001674278.1 2480294 D 458817 CDS YP_001674279.1 167623985 5907045 2481729..2482505 1 NC_010334.1 PFAM: DTW domain containing protein; KEGG: slo:Shew_1966 DTW domain containing protein; DTW domain-containing protein 2482505 5907045 Shal_2059 Shewanella halifaxensis HAW-EB4 DTW domain-containing protein YP_001674279.1 2481729 D 458817 CDS YP_001674280.1 167623986 5907046 2482838..2482996 1 NC_010334.1 hypothetical protein 2482996 5907046 Shal_2060 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674280.1 2482838 D 458817 CDS YP_001674281.1 167623987 5906156 complement(2483023..2483622) 1 NC_010334.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: slo:Shew_1969 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2483622 5906156 Shal_2061 Shewanella halifaxensis HAW-EB4 two component LuxR family transcriptional regulator YP_001674281.1 2483023 R 458817 CDS YP_001674282.1 167623988 5906157 complement(2483615..2485399) 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: slo:Shew_1970 histidine kinase; histidine kinase 2485399 5906157 Shal_2062 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001674282.1 2483615 R 458817 CDS YP_001674283.1 167623989 5905439 complement(2485625..2486848) 1 NC_010334.1 PFAM: ApbE family lipoprotein; KEGG: slo:Shew_1971 ApbE family lipoprotein; ApbE family lipoprotein 2486848 5905439 Shal_2063 Shewanella halifaxensis HAW-EB4 ApbE family lipoprotein YP_001674283.1 2485625 R 458817 CDS YP_001674284.1 167623990 5905440 2487015..2488397 1 NC_010334.1 PFAM: FMN-binding domain protein; KEGG: slo:Shew_1972 FMN-binding domain protein; FMN-binding domain-containing protein 2488397 5905440 Shal_2064 Shewanella halifaxensis HAW-EB4 FMN-binding domain-containing protein YP_001674284.1 2487015 D 458817 CDS YP_001674285.1 167623991 5905357 2488481..2489521 1 NC_010334.1 PFAM: porin Gram-negative type; KEGG: slo:Shew_1973 porin, gram-negative type; porin 2489521 5905357 Shal_2065 Shewanella halifaxensis HAW-EB4 porin YP_001674285.1 2488481 D 458817 CDS YP_001674286.1 167623992 5905358 2490108..2490848 1 NC_010334.1 PFAM: pseudouridine synthase; KEGG: asa:ASA_2900 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase 2490848 5905358 Shal_2066 Shewanella halifaxensis HAW-EB4 pseudouridine synthase YP_001674286.1 2490108 D 458817 CDS YP_001674287.1 167623993 5905285 complement(2490977..2492092) 1 NC_010334.1 PFAM: integrase family protein; KEGG: sbm:Shew185_2263 phage integrase family protein; integrase family protein 2492092 5905285 Shal_2067 Shewanella halifaxensis HAW-EB4 integrase family protein YP_001674287.1 2490977 R 458817 CDS YP_001674288.1 167623994 5905286 2492960..2493466 1 NC_010334.1 KEGG: sbm:Shew185_2262 hypothetical protein; hypothetical protein 2493466 5905286 Shal_2068 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674288.1 2492960 D 458817 CDS YP_001674289.1 167623995 5904881 complement(2493622..2494647) 1 NC_010334.1 PFAM: protein of unknown function DUF227; SMART: CHK kinase-like; KEGG: dre:797003 hypothetical protein LOC797003; hypothetical protein 2494647 5904881 Shal_2069 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674289.1 2493622 R 458817 CDS YP_001674290.1 167623996 5904882 2494803..2495192 1 NC_010334.1 KEGG: pnu:Pnuc_1464 hypothetical protein; hypothetical protein 2495192 5904882 Shal_2070 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674290.1 2494803 D 458817 CDS YP_001674291.1 167623997 5904906 2495819..2496511 1 NC_010334.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vpa:VP2146 putative oxidoreductase protein; short-chain dehydrogenase/reductase SDR 2496511 5904906 Shal_2071 Shewanella halifaxensis HAW-EB4 short-chain dehydrogenase/reductase SDR YP_001674291.1 2495819 D 458817 CDS YP_001674292.1 167623998 5904846 2496871..2498247 1 NC_010334.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; protein of unknown function DUF785; RimK domain protein ATP-grasp; KEGG: fjo:Fjoh_2582 alpha-L-glutamate ligase, RimK family; alpha-L-glutamate ligase 2498247 5904846 Shal_2072 Shewanella halifaxensis HAW-EB4 alpha-L-glutamate ligase YP_001674292.1 2496871 D 458817 CDS YP_001674293.1 167623999 5904847 2498439..2498765 1 NC_010334.1 KEGG: slo:Shew_2004 hypothetical protein; hypothetical protein 2498765 5904847 Shal_2073 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674293.1 2498439 D 458817 CDS YP_001674294.1 167624000 5905225 complement(2501029..2502039) 1 NC_010334.1 KEGG: slo:Shew_2002 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 2502039 5905225 Shal_2076 Shewanella halifaxensis HAW-EB4 glyceraldehyde-3-phosphate dehydrogenase YP_001674294.1 2501029 R 458817 CDS YP_001674295.1 167624001 5904835 complement(2502260..2503102) 1 NC_010334.1 KEGG: saz:Sama_1807 hypothetical protein; hypothetical protein 2503102 5904835 Shal_2077 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674295.1 2502260 R 458817 CDS YP_001674296.1 167624002 5904836 2503325..2504761 1 NC_010334.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 2504761 5904836 Shal_2078 Shewanella halifaxensis HAW-EB4 glyceraldehyde-3-phosphate dehydrogenase YP_001674296.1 2503325 D 458817 CDS YP_001674297.1 167624003 5905088 complement(2506246..2506575) 1 NC_010334.1 PFAM: DsrC family protein; KEGG: sfr:Sfri_1800 DsrC family protein; DsrC family protein 2506575 5905088 Shal_2079 Shewanella halifaxensis HAW-EB4 DsrC family protein YP_001674297.1 2506246 R 458817 CDS YP_001674298.1 167624004 5905702 complement(2506577..2506858) 1 NC_010334.1 PFAM: DsrH family protein; KEGG: shw:Sputw3181_2008 DsrH family protein; DsrH family protein 2506858 5905702 Shal_2080 Shewanella halifaxensis HAW-EB4 DsrH family protein YP_001674298.1 2506577 R 458817 CDS YP_001674299.1 167624005 5904306 complement(2506858..2507214) 1 NC_010334.1 PFAM: DsrE family protein; KEGG: sbm:Shew185_2207 DsrE family protein; DsrE family protein 2507214 5904306 Shal_2081 Shewanella halifaxensis HAW-EB4 DsrE family protein YP_001674299.1 2506858 R 458817 CDS YP_001674300.1 167624006 5904307 complement(2507223..2507612) 1 NC_010334.1 PFAM: DsrE family protein; KEGG: slo:Shew_2015 DsrE family protein; DsrE family protein 2507612 5904307 Shal_2082 Shewanella halifaxensis HAW-EB4 DsrE family protein YP_001674300.1 2507223 R 458817 CDS YP_001674301.1 167624007 5904288 complement(2507670..2508332) 1 NC_010334.1 PFAM: protein of unknown function UPF0005; KEGG: sbm:Shew185_2205 protein of unknown function UPF0005; hypothetical protein 2508332 5904288 Shal_2083 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674301.1 2507670 R 458817 CDS YP_001674302.1 167624008 5904289 complement(2508504..2509406) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_2013 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator 2509406 5904289 Shal_2084 Shewanella halifaxensis HAW-EB4 putative DNA-binding transcriptional regulator YP_001674302.1 2508504 R 458817 CDS YP_001674303.1 167624009 5903331 2509537..2510769 1 NC_010334.1 uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 2510769 5903331 Shal_2085 Shewanella halifaxensis HAW-EB4 inner membrane transport protein YdhC YP_001674303.1 2509537 D 458817 CDS YP_001674304.1 167624010 5903444 complement(2511163..2511942) 1 NC_010334.1 KEGG: pha:PSHAa2145 3 alpha-hydroxysteroid dehydrogenase/carbonyl reductase; 3 alpha-hydroxysteroid dehydrogenase/carbonyl reductase 2511942 5903444 Shal_2086 Shewanella halifaxensis HAW-EB4 3 alpha-hydroxysteroid dehydrogenase/carbonyl reductase YP_001674304.1 2511163 R 458817 CDS YP_001674305.1 167624011 5903029 complement(2512069..2513448) 1 NC_010334.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pha:PSHAa2144 transporter; major facilitator transporter 2513448 5903029 Shal_2087 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001674305.1 2512069 R 458817 CDS YP_001674306.1 167624012 5902819 complement(2513451..2514473) 1 NC_010334.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 2514473 5902819 Shal_2088 Shewanella halifaxensis HAW-EB4 4-hydroxy-2-ketovalerate aldolase YP_001674306.1 2513451 R 458817 CDS YP_001674307.1 167624013 5902820 complement(2514483..2515406) 1 NC_010334.1 catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 2515406 5902820 Shal_2089 Shewanella halifaxensis HAW-EB4 acetaldehyde dehydrogenase YP_001674307.1 2514483 R 458817 CDS YP_001674308.1 167624014 5902707 complement(2515451..2516266) 1 NC_010334.1 PFAM: Hydratase/decarboxylase; KEGG: pha:PSHAa2141 2-hydroxypent-2,4-dienoate hydratase (HPH) (2-oxopent-4-enoate hydratase); 4-oxalocrotonate decarboxylase 2516266 5902707 Shal_2090 Shewanella halifaxensis HAW-EB4 4-oxalocrotonate decarboxylase YP_001674308.1 2515451 R 458817 CDS YP_001674309.1 167624015 5902708 complement(2516276..2517244) 1 NC_010334.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: pha:PSHAa2140 TesA protein; flavin reductase domain-containing protein 2517244 5902708 Shal_2091 Shewanella halifaxensis HAW-EB4 flavin reductase domain-containing protein YP_001674309.1 2516276 R 458817 CDS YP_001674310.1 167624016 5903021 2517534..2518958 1 NC_010334.1 PFAM: aldehyde dehydrogenase; KEGG: pha:PSHAa2139 aldehyde dehydrogenase; aldehyde dehydrogenase 2518958 5903021 Shal_2092 Shewanella halifaxensis HAW-EB4 aldehyde dehydrogenase YP_001674310.1 2517534 D 458817 CDS YP_001674311.1 167624017 5903022 complement(2519063..2520157) 1 NC_010334.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pha:PSHAa2137 protein with ferredoxin subunits; Rieske (2Fe-2S) domain-containing protein 2520157 5903022 Shal_2093 Shewanella halifaxensis HAW-EB4 Rieske (2Fe-2S) domain-containing protein YP_001674311.1 2519063 R 458817 CDS YP_001674312.1 167624018 5903400 complement(2520235..2521620) 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa2136 transporter; major facilitator transporter 2521620 5903400 Shal_2094 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001674312.1 2520235 R 458817 CDS YP_001674313.1 167624019 5903401 2521796..2522899 1 NC_010334.1 PFAM: beta-lactamase domain protein; KEGG: pha:PSHAa2135 metallo-dependent enzymatic protein; beta-lactamase domain-containing protein 2522899 5903401 Shal_2095 Shewanella halifaxensis HAW-EB4 beta-lactamase domain-containing protein YP_001674313.1 2521796 D 458817 CDS YP_001674314.1 167624020 5902651 2522944..2524644 1 NC_010334.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pha:PSHAa2134 AMP-binding enzyme; AMP-dependent synthetase and ligase 2524644 5902651 Shal_2096 Shewanella halifaxensis HAW-EB4 AMP-dependent synthetase and ligase YP_001674314.1 2522944 D 458817 CDS YP_001674315.1 167624021 5902652 2524911..2526680 1 NC_010334.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pha:PSHAa2133 3-ketosteroid-delta1-dehydrogenase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 2526680 5902652 Shal_2097 Shewanella halifaxensis HAW-EB4 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001674315.1 2524911 D 458817 CDS YP_001674316.1 167624022 5903284 2526866..2528506 1 NC_010334.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2528506 5903284 Shal_2098 Shewanella halifaxensis HAW-EB4 long-chain-fatty-acid--CoA ligase YP_001674316.1 2526866 D 458817 CDS YP_001674317.1 167624023 5903285 complement(2528885..2531323) 1 NC_010334.1 KEGG: reu:Reut_A1574 hypothetical protein; hypothetical protein 2531323 5903285 Shal_2099 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674317.1 2528885 R 458817 CDS YP_001674318.1 167624024 5903030 complement(2531346..2532365) 1 NC_010334.1 KEGG: bur:Bcep18194_B1446 glycosyl hydrolase; glycosyl hydrolase 2532365 5903030 Shal_2100 Shewanella halifaxensis HAW-EB4 glycosyl hydrolase YP_001674318.1 2531346 R 458817 CDS YP_001674319.1 167624025 5903031 2532756..2533979 1 NC_010334.1 PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: pha:PSHAa0877 steroid degradation protein; acyl-CoA dehydrogenase type 2 2533979 5903031 Shal_2101 Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase type 2 YP_001674319.1 2532756 D 458817 CDS YP_001674320.1 167624026 5904715 2534020..2535105 1 NC_010334.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pha:PSHAa0878 reductase protein; oxidoreductase FAD-binding subunit 2535105 5904715 Shal_2102 Shewanella halifaxensis HAW-EB4 oxidoreductase FAD-binding subunit YP_001674320.1 2534020 D 458817 CDS YP_001674321.1 167624027 5904716 2535582..2536370 1 NC_010334.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pha:PSHAa0879 3-oxoacyl-(ACP) reductase; short-chain dehydrogenase/reductase SDR 2536370 5904716 Shal_2103 Shewanella halifaxensis HAW-EB4 short-chain dehydrogenase/reductase SDR YP_001674321.1 2535582 D 458817 CDS YP_001674322.1 167624028 5903212 2536378..2537481 1 NC_010334.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pha:PSHAa0880 NADPH dehydrogenase; NADH:flavin oxidoreductase 2537481 5903212 Shal_2104 Shewanella halifaxensis HAW-EB4 NADH:flavin oxidoreductase YP_001674322.1 2536378 D 458817 CDS YP_001674323.1 167624029 5904536 2537507..2538256 1 NC_010334.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dar:Daro_1211 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit alpha/beta 2538256 5904536 Shal_2105 Shewanella halifaxensis HAW-EB4 electron transfer flavoprotein subunit alpha/beta YP_001674323.1 2537507 D 458817 CDS YP_001674324.1 167624030 5904537 2538269..2539222 1 NC_010334.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: eba:ebA6510 electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha 2539222 5904537 Shal_2106 Shewanella halifaxensis HAW-EB4 electron transfer flavoprotein subunit alpha YP_001674324.1 2538269 D 458817 CDS YP_001674325.1 167624031 5904428 2539311..2540504 1 NC_010334.1 PFAM: regulatory protein LuxR; KEGG: pha:PSHAa0881 LuxR-type transcription regulator required for testosterone degradation; LuxR family transcriptional regulator 2540504 5904428 Shal_2107 Shewanella halifaxensis HAW-EB4 LuxR family transcriptional regulator YP_001674325.1 2539311 D 458817 CDS YP_001674326.1 167624032 5904429 complement(2540576..2541358) 1 NC_010334.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2541358 5904429 Shal_2108 Shewanella halifaxensis HAW-EB4 enoyl-CoA hydratase YP_001674326.1 2540576 R 458817 CDS YP_001674327.1 167624033 5904272 2541605..2542375 1 NC_010334.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pha:PSHAa0883 short chain dehydrogenase; short chain dehydrogenase 2542375 5904272 Shal_2109 Shewanella halifaxensis HAW-EB4 short chain dehydrogenase YP_001674327.1 2541605 D 458817 CDS YP_001674328.1 167624034 5904273 2542500..2543483 1 NC_010334.1 PFAM: protein of unknown function DUF35; KEGG: pha:PSHAa0884 hypothetical protein; hypothetical protein 2543483 5904273 Shal_2110 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674328.1 2542500 D 458817 CDS YP_001674329.1 167624035 5904254 2543496..2544623 1 NC_010334.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pha:PSHAa0885 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2544623 5904254 Shal_2111 Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase domain-containing protein YP_001674329.1 2543496 D 458817 CDS YP_001674330.1 167624036 5904255 2544610..2545059 1 NC_010334.1 PFAM: MaoC domain protein dehydratase; KEGG: pha:PSHAa0886 hypothetical protein; dehydratase 2545059 5904255 Shal_2112 Shewanella halifaxensis HAW-EB4 dehydratase YP_001674330.1 2544610 D 458817 CDS YP_001674331.1 167624037 5903447 2545073..2546251 1 NC_010334.1 KEGG: pha:PSHAa0887 lipid-transfer protein; lipid-transfer protein 2546251 5903447 Shal_2113 Shewanella halifaxensis HAW-EB4 lipid-transfer protein YP_001674331.1 2545073 D 458817 CDS YP_001674332.1 167624038 5903448 2546254..2547423 1 NC_010334.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa0888 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2547423 5903448 Shal_2114 Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase domain-containing protein YP_001674332.1 2546254 D 458817 CDS YP_001674333.1 167624039 5903865 2547443..2548681 1 NC_010334.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa0889 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2548681 5903865 Shal_2115 Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase domain-containing protein YP_001674333.1 2547443 D 458817 CDS YP_001674334.1 167624040 5903866 2548678..2549883 1 NC_010334.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa0890 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2549883 5903866 Shal_2116 Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase domain-containing protein YP_001674334.1 2548678 D 458817 CDS YP_001674335.1 167624041 5902869 complement(2550163..2552283) 1 NC_010334.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pha:PSHAa0892 electron acceptor reductase/NADH oxidase, FAD binding, iron-sulfur cluster binding site; NADH:flavin oxidoreductase 2552283 5902869 Shal_2117 Shewanella halifaxensis HAW-EB4 NADH:flavin oxidoreductase YP_001674335.1 2550163 R 458817 CDS YP_001674336.1 167624042 5902870 complement(2552445..2553281) 1 NC_010334.1 PFAM: alpha/beta hydrolase fold; KEGG: pha:PSHAa0893 hydrolase acting on oxygenated substrates (epoxide hydrolase); alpha/beta hydrolase fold protein 2553281 5902870 Shal_2118 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase fold protein YP_001674336.1 2552445 R 458817 CDS YP_001674337.1 167624043 5903288 2553600..2554343 1 NC_010334.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pha:PSHAa0894 3-ketoacyl-(ACP) reductase; short-chain dehydrogenase/reductase SDR 2554343 5903288 Shal_2119 Shewanella halifaxensis HAW-EB4 short-chain dehydrogenase/reductase SDR YP_001674337.1 2553600 D 458817 CDS YP_001674338.1 167624044 5903289 2554353..2554979 1 NC_010334.1 KEGG: pha:PSHAa0895 enzyme; hypothetical protein 2554979 5903289 Shal_2120 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674338.1 2554353 D 458817 CDS YP_001674339.1 167624045 5902966 2555045..2556910 1 NC_010334.1 activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization; long-chain-acyl-CoA synthetase 2556910 5902966 Shal_2121 Shewanella halifaxensis HAW-EB4 long-chain-acyl-CoA synthetase YP_001674339.1 2555045 D 458817 CDS YP_001674340.1 167624046 5902967 2556923..2558134 1 NC_010334.1 KEGG: pha:PSHAa0897 nonspecific lipid-transfer protein; nonspecific lipid-transfer protein 2558134 5902967 Shal_2122 Shewanella halifaxensis HAW-EB4 nonspecific lipid-transfer protein YP_001674340.1 2556923 D 458817 CDS YP_001674341.1 167624047 5904864 2558137..2559072 1 NC_010334.1 PFAM: MaoC domain protein dehydratase; protein of unknown function DUF35; KEGG: pha:PSHAa0898 acyl dehydratase; hypothetical protein 2559072 5904864 Shal_2123 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674341.1 2558137 D 458817 CDS YP_001674342.1 167624048 5903292 2559265..2560167 1 NC_010334.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pha:PSHAa0900 dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2560167 5903292 Shal_2124 Shewanella halifaxensis HAW-EB4 glyoxalase/bleomycin resistance protein/dioxygenase YP_001674342.1 2559265 D 458817 CDS YP_001674343.1 167624049 5903293 2560168..2561043 1 NC_010334.1 PFAM: coenzyme A transferase; KEGG: pha:PSHAa0901 acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; coenzyme A transferase 2561043 5903293 Shal_2125 Shewanella halifaxensis HAW-EB4 coenzyme A transferase YP_001674343.1 2560168 D 458817 CDS YP_001674344.1 167624050 5904939 2561118..2561948 1 NC_010334.1 PFAM: coenzyme A transferase; KEGG: pha:PSHAa0902 acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; coenzyme A transferase 2561948 5904939 Shal_2126 Shewanella halifaxensis HAW-EB4 coenzyme A transferase YP_001674344.1 2561118 D 458817 CDS YP_001674345.1 167624051 5904940 2561948..2562904 1 NC_010334.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2562904 5904940 Shal_2127 Shewanella halifaxensis HAW-EB4 enoyl-CoA hydratase YP_001674345.1 2561948 D 458817 CDS YP_001674346.1 167624052 5904829 2562901..2564055 1 NC_010334.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: pha:PSHAa0904 dioxygenase; 2-nitropropane dioxygenase 2564055 5904829 Shal_2128 Shewanella halifaxensis HAW-EB4 2-nitropropane dioxygenase YP_001674346.1 2562901 D 458817 CDS YP_001674347.1 167624053 5904830 2564058..2564843 1 NC_010334.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2564843 5904830 Shal_2129 Shewanella halifaxensis HAW-EB4 enoyl-CoA hydratase YP_001674347.1 2564058 D 458817 CDS YP_001674348.1 167624054 5905146 2564874..2566031 1 NC_010334.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa0906 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2566031 5905146 Shal_2130 Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase domain-containing protein YP_001674348.1 2564874 D 458817 CDS YP_001674349.1 167624055 5905147 2566040..2567116 1 NC_010334.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pha:PSHAa0907 butyryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2567116 5905147 Shal_2131 Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase domain-containing protein YP_001674349.1 2566040 D 458817 CDS YP_001674350.1 167624056 5904972 2567116..2568270 1 NC_010334.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2568270 5904972 Shal_2132 Shewanella halifaxensis HAW-EB4 acetyl-CoA acetyltransferase YP_001674350.1 2567116 D 458817 CDS YP_001674351.1 167624057 5904973 2568326..2569204 1 NC_010334.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pha:PSHAa0909 short chain dehydrogenase; short chain dehydrogenase 2569204 5904973 Shal_2133 Shewanella halifaxensis HAW-EB4 short chain dehydrogenase YP_001674351.1 2568326 D 458817 CDS YP_001674352.1 167624058 5905258 2569281..2570870 1 NC_010334.1 PFAM: Amidase; KEGG: pha:PSHAa0910 allophanate hydrolase; amidase 2570870 5905258 Shal_2134 Shewanella halifaxensis HAW-EB4 amidase YP_001674352.1 2569281 D 458817 CDS YP_001674353.1 167624059 5905259 complement(2571519..2571725) 1 NC_010334.1 KEGG: vha:VIBHAR_03040 hypothetical protein; hypothetical protein 2571725 5905259 Shal_2135 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674353.1 2571519 R 458817 CDS YP_001674354.1 167624060 5905317 2572138..2574375 1 NC_010334.1 KEGG: sal:Sala_0059 hypothetical protein; hypothetical protein 2574375 5905317 Shal_2136 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674354.1 2572138 D 458817 CDS YP_001674355.1 167624061 5905318 complement(2575344..2576870) 1 NC_010334.1 PFAM: protein of unknown function DUF1302; KEGG: bur:Bcep18194_B1461 protein of unknown function DUF1302; hypothetical protein 2576870 5905318 Shal_2137 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674355.1 2575344 R 458817 CDS YP_001674356.1 167624062 5905361 complement(2576897..2578282) 1 NC_010334.1 PFAM: protein of unknown function DUF1329; KEGG: reu:Reut_A1519 protein of unknown function DUF1329; hypothetical protein 2578282 5905361 Shal_2138 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674356.1 2576897 R 458817 CDS YP_001674357.1 167624063 5905362 2578678..2579463 1 NC_010334.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pha:PSHAa2151 short chain dehydrogenase; short chain dehydrogenase 2579463 5905362 Shal_2139 Shewanella halifaxensis HAW-EB4 short chain dehydrogenase YP_001674357.1 2578678 D 458817 CDS YP_001674358.1 167624064 5905254 2579472..2579957 1 NC_010334.1 PFAM: MaoC domain protein dehydratase; KEGG: pha:PSHAa2150 MaoC-like deshydratase domain; dehydratase 2579957 5905254 Shal_2140 Shewanella halifaxensis HAW-EB4 dehydratase YP_001674358.1 2579472 D 458817 CDS YP_001674359.1 167624065 5905255 2579970..2581175 1 NC_010334.1 KEGG: reu:Reut_A1572 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 2581175 5905255 Shal_2141 Shewanella halifaxensis HAW-EB4 acetyl-CoA acetyltransferase YP_001674359.1 2579970 D 458817 CDS YP_001674360.1 167624066 5905471 2581189..2582037 1 NC_010334.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pat:Patl_3812 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 2582037 5905471 Shal_2142 Shewanella halifaxensis HAW-EB4 enoyl-CoA hydratase/isomerase YP_001674360.1 2581189 D 458817 CDS YP_001674361.1 167624067 5904647 2582089..2583747 1 NC_010334.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: ppf:Pput_1650 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 2583747 5904647 Shal_2143 Shewanella halifaxensis HAW-EB4 electron-transferring-flavoprotein dehydrogenase YP_001674361.1 2582089 D 458817 CDS YP_001674362.1 167624068 5904648 2583882..2584646 1 NC_010334.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: gme:Gmet_2217 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2584646 5904648 Shal_2144 Shewanella halifaxensis HAW-EB4 short-chain dehydrogenase/reductase SDR YP_001674362.1 2583882 D 458817 CDS YP_001674363.1 167624069 5904680 2584703..2585098 1 NC_010334.1 PFAM: nuclear transport factor 2; KEGG: swi:Swit_3295 nuclear transport factor 2; nuclear transport factor 2 2585098 5904680 Shal_2145 Shewanella halifaxensis HAW-EB4 nuclear transport factor 2 YP_001674363.1 2584703 D 458817 CDS YP_001674364.1 167624070 5904681 2585127..2586335 1 NC_010334.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pha:PSHAa2131 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2586335 5904681 Shal_2146 Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase domain-containing protein YP_001674364.1 2585127 D 458817 CDS YP_001674365.1 167624071 5905506 2586332..2587522 1 NC_010334.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa2130 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2587522 5905506 Shal_2147 Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase domain-containing protein YP_001674365.1 2586332 D 458817 CDS YP_001674366.1 167624072 5905507 complement(2587657..2590833) 1 NC_010334.1 PFAM: acriflavin resistance protein; KEGG: sfr:Sfri_1929 acriflavin resistance protein; acriflavin resistance protein 2590833 5905507 Shal_2148 Shewanella halifaxensis HAW-EB4 acriflavin resistance protein YP_001674366.1 2587657 R 458817 CDS YP_001674367.1 167624073 5905337 complement(2590837..2592030) 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sfr:Sfri_1930 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2592030 5905337 Shal_2149 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001674367.1 2590837 R 458817 CDS YP_001674368.1 167624074 5905338 complement(2592531..2592866) 1 NC_010334.1 PFAM: SEC-C motif domain protein; KEGG: shw:Sputw3181_1017 sec-C motif domain protein; SecC motif-containing protein 2592866 5905338 Shal_2150 Shewanella halifaxensis HAW-EB4 SecC motif-containing protein YP_001674368.1 2592531 R 458817 CDS YP_001674369.1 167624075 5905492 2593204..2594124 1 NC_010334.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 2594124 5905492 Shal_2151 Shewanella halifaxensis HAW-EB4 putative manganese-dependent inorganic pyrophosphatase YP_001674369.1 2593204 D 458817 CDS YP_001674370.1 167624076 5905493 complement(2594227..2596611) 1 NC_010334.1 KEGG: ppr:PBPRB0364 putative ATP-dependent protease La-relatedprotein; putative ATP-dependent protease La-likeprotein 2596611 5905493 Shal_2152 Shewanella halifaxensis HAW-EB4 putative ATP-dependent protease La-likeprotein YP_001674370.1 2594227 R 458817 CDS YP_001674371.1 167624077 5905682 complement(2596963..2599602) 1 NC_010334.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: vfi:VFA0990 trimethylamine-N-oxide reductase; molybdopterin oxidoreductase 2599602 5905682 Shal_2153 Shewanella halifaxensis HAW-EB4 molybdopterin oxidoreductase YP_001674371.1 2596963 R 458817 CDS YP_001674372.1 167624078 5905683 complement(2599896..2602265) 1 NC_010334.1 PFAM: peptidase U32; KEGG: ppr:PBPRA1758 putative collagenase family protease; peptidase U32 2602265 5905683 Shal_2154 Shewanella halifaxensis HAW-EB4 peptidase U32 YP_001674372.1 2599896 R 458817 CDS YP_001674373.1 167624079 5905709 complement(2602650..2603114) 1 NC_010334.1 SMART: Rhodanese domain protein; KEGG: aae:aq_1599 hypothetical protein; rhodanese domain-containing protein 2603114 5905709 Shal_2155 Shewanella halifaxensis HAW-EB4 rhodanese domain-containing protein YP_001674373.1 2602650 R 458817 CDS YP_001674374.1 167624080 5905710 2603934..2604980 1 NC_010334.1 KEGG: ppr:PBPRB1179 hypothetical protein; hypothetical protein 2604980 5905710 Shal_2156 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674374.1 2603934 D 458817 CDS YP_001674375.1 167624081 5905703 2605174..2605812 1 NC_010334.1 KEGG: sfr:Sfri_3117 hypothetical protein; hypothetical protein 2605812 5905703 Shal_2157 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674375.1 2605174 D 458817 CDS YP_001674376.1 167624082 5905704 complement(2606163..2607026) 1 NC_010334.1 involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; putative metallothionein SmtA 2607026 5905704 Shal_2158 Shewanella halifaxensis HAW-EB4 putative metallothionein SmtA YP_001674376.1 2606163 R 458817 CDS YP_001674377.1 167624083 5905834 2607619..2608464 1 NC_010334.1 PFAM: beta-lactamase domain protein; KEGG: son:SO_A0149 hypothetical protein; beta-lactamase domain-containing protein 2608464 5905834 Shal_2159 Shewanella halifaxensis HAW-EB4 beta-lactamase domain-containing protein YP_001674377.1 2607619 D 458817 CDS YP_001674378.1 167624084 5905835 complement(2608747..2610042) 1 NC_010334.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 2610042 5905835 Shal_2160 Shewanella halifaxensis HAW-EB4 cytosine deaminase YP_001674378.1 2608747 R 458817 CDS YP_001674379.1 167624085 5905797 complement(2610053..2611318) 1 NC_010334.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: vha:VIBHAR_05320 hypothetical protein; cytosine permease 2611318 codB 5905797 codB Shewanella halifaxensis HAW-EB4 cytosine permease YP_001674379.1 2610053 R 458817 CDS YP_001674380.1 167624086 5905642 2611705..2612061 1 NC_010334.1 KEGG: vpa:VPA0396 putative outer membrane lipoprotein; putative outer membrane lipoprotein 2612061 5905642 Shal_2162 Shewanella halifaxensis HAW-EB4 putative outer membrane lipoprotein YP_001674380.1 2611705 D 458817 CDS YP_001674381.1 167624087 5905643 complement(2612071..2613612) 1 NC_010334.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: vvu:VV2_0169 permease of the major facilitator superfamily; EmrB/QacA family drug resistance transporter 2613612 5905643 Shal_2163 Shewanella halifaxensis HAW-EB4 EmrB/QacA family drug resistance transporter YP_001674381.1 2612071 R 458817 CDS YP_001674382.1 167624088 5905742 complement(2613614..2614657) 1 NC_010334.1 PFAM: secretion protein HlyD family protein; KEGG: vpa:VPA0097 putative secretion protein; secretion protein HlyD family protein 2614657 5905742 Shal_2164 Shewanella halifaxensis HAW-EB4 secretion protein HlyD family protein YP_001674382.1 2613614 R 458817 CDS YP_001674383.1 167624089 5905743 complement(2614864..2615016) 1 NC_010334.1 KEGG: vfi:VF1267 DNA polymerase V; hypothetical protein 2615016 5905743 Shal_2165 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674383.1 2614864 R 458817 CDS YP_001674384.1 167624090 5905813 2615260..2616486 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_2037 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2616486 5905813 Shal_2166 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001674384.1 2615260 D 458817 CDS YP_001674385.1 167624091 5905814 2616486..2619620 1 NC_010334.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_2036 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 2619620 5905814 Shal_2167 Shewanella halifaxensis HAW-EB4 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001674385.1 2616486 D 458817 CDS YP_001674386.1 167624092 5905803 2619613..2621151 1 NC_010334.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: shm:Shewmr7_2035 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein 2621151 5905803 Shal_2168 Shewanella halifaxensis HAW-EB4 RND efflux system outer membrane lipoprotein YP_001674386.1 2619613 D 458817 CDS YP_001674387.1 167624093 5905804 complement(2621348..2622601) 1 NC_010334.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sdn:Sden_3235 DNA-directed DNA polymerase; DNA-directed DNA polymerase 2622601 5905804 Shal_2169 Shewanella halifaxensis HAW-EB4 DNA-directed DNA polymerase YP_001674387.1 2621348 R 458817 CDS YP_001674388.1 167624094 5906995 complement(2622604..2623011) 1 NC_010334.1 PFAM: peptidase S24 and S26 domain protein; KEGG: sfr:Sfri_1963 putative prophage repressor; peptidase S24/S26 domain-containing protein 2623011 5906995 Shal_2170 Shewanella halifaxensis HAW-EB4 peptidase S24/S26 domain-containing protein YP_001674388.1 2622604 R 458817 CDS YP_001674389.1 167624095 5906996 2623416..2624720 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vfi:VFA0342 sensory transduction protein kinase; diguanylate cyclase 2624720 5906996 Shal_2171 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001674389.1 2623416 D 458817 CDS YP_001674390.1 167624096 5906926 2624863..2625066 1 NC_010334.1 KEGG: ppr:PBPRB0729 hypothetical protein; hypothetical protein 2625066 5906926 Shal_2172 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674390.1 2624863 D 458817 CDS YP_001674391.1 167624097 5906927 2625612..2625998 1 NC_010334.1 KEGG: cvi:CV_1450 hypothetical protein; hypothetical protein 2625998 5906927 Shal_2173 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674391.1 2625612 D 458817 CDS YP_001674392.1 167624098 5906578 2627402..2628274 1 NC_010334.1 KEGG: saz:Sama_0739 hypothetical protein; hypothetical protein 2628274 5906578 Shal_2174 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674392.1 2627402 D 458817 CDS YP_001674393.1 167624099 5906579 2628806..2629516 1 NC_010334.1 hypothetical protein 2629516 5906579 Shal_2175 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674393.1 2628806 D 458817 CDS YP_001674394.1 167624100 5905930 2629510..2631786 1 NC_010334.1 PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: pin:Ping_3112 ATP-dependent RNA helicase, DEAD box family protein; helicase domain-containing protein 2631786 5905930 Shal_2176 Shewanella halifaxensis HAW-EB4 helicase domain-containing protein YP_001674394.1 2629510 D 458817 CDS YP_001674395.1 167624101 5905931 2632752..2633318 1 NC_010334.1 hypothetical protein 2633318 5905931 Shal_2177 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674395.1 2632752 D 458817 CDS YP_001674396.1 167624102 5907036 2633378..2634127 1 NC_010334.1 KEGG: ppu:PP_2292 hypothetical protein; hypothetical protein 2634127 5907036 Shal_2178 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674396.1 2633378 D 458817 CDS YP_001674397.1 167624103 5907037 2634252..2635220 1 NC_010334.1 KEGG: son:SO_1888 hypothetical protein; hypothetical protein 2635220 5907037 Shal_2179 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674397.1 2634252 D 458817 CDS YP_001674398.1 167624104 5907025 2635323..2636639 1 NC_010334.1 KEGG: cch:Cag_1860 hypothetical protein; hypothetical protein 2636639 5907025 Shal_2180 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674398.1 2635323 D 458817 CDS YP_001674399.1 167624105 5906962 2637326..2640373 1 NC_010334.1 PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: spc:Sputcn32_3844 type III restriction enzyme, res subunit; type III restriction protein res subunit 2640373 5906962 Shal_2181 Shewanella halifaxensis HAW-EB4 type III restriction protein res subunit YP_001674399.1 2637326 D 458817 CDS YP_001674400.1 167624106 5906963 complement(2640679..2641431) 1 NC_010334.1 PFAM: Endonuclease I; KEGG: ppr:PBPRC0029 putative endonuclease I; deoxyribonuclease I 2641431 5906963 Shal_2182 Shewanella halifaxensis HAW-EB4 deoxyribonuclease I YP_001674400.1 2640679 R 458817 CDS YP_001674401.1 167624107 5906943 complement(2641539..2642792) 1 NC_010334.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sdn:Sden_3235 DNA-directed DNA polymerase; DNA-directed DNA polymerase 2642792 5906943 Shal_2183 Shewanella halifaxensis HAW-EB4 DNA-directed DNA polymerase YP_001674401.1 2641539 R 458817 CDS YP_001674402.1 167624108 5906944 complement(2642795..2643202) 1 NC_010334.1 PFAM: peptidase S24 and S26 domain protein; KEGG: sfr:Sfri_1963 putative prophage repressor; peptidase S24/S26 domain-containing protein 2643202 5906944 Shal_2184 Shewanella halifaxensis HAW-EB4 peptidase S24/S26 domain-containing protein YP_001674402.1 2642795 R 458817 CDS YP_001674403.1 167624109 5906791 2643546..2645762 1 NC_010334.1 KEGG: vpa:VPA1255 hypothetical protein; hypothetical protein 2645762 5906791 Shal_2185 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674403.1 2643546 D 458817 CDS YP_001674404.1 167624110 5906792 2645936..2646739 1 NC_010334.1 PFAM: FRG domain protein; KEGG: pla:Plav_0332 FRG domain protein; FRG domain-containing protein 2646739 5906792 Shal_2186 Shewanella halifaxensis HAW-EB4 FRG domain-containing protein YP_001674404.1 2645936 D 458817 CDS YP_001674405.1 167624111 5906604 2646782..2647279 1 NC_010334.1 hypothetical protein 2647279 5906604 Shal_2187 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674405.1 2646782 D 458817 CDS YP_001674406.1 167624112 5906605 complement(2647720..2648910) 1 NC_010334.1 KEGG: vpa:VP2902 hypothetical protein; hypothetical protein 2648910 5906605 Shal_2188 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674406.1 2647720 R 458817 CDS YP_001674407.1 167624113 5906542 2649018..2650208 1 NC_010334.1 KEGG: vpa:VP2901 hypothetical protein; hypothetical protein 2650208 5906542 Shal_2189 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674407.1 2649018 D 458817 CDS YP_001674408.1 167624114 5906543 complement(2650321..2650764) 1 NC_010334.1 KEGG: pcr:Pcryo_1366 hypothetical protein; hypothetical protein 2650764 5906543 Shal_2190 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674408.1 2650321 R 458817 CDS YP_001674409.1 167624115 5906378 complement(2650866..2653292) 1 NC_010334.1 KEGG: pcr:Pcryo_1367 hypothetical protein; hypothetical protein 2653292 5906378 Shal_2191 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674409.1 2650866 R 458817 CDS YP_001674410.1 167624116 5906379 complement(2653289..2654836) 1 NC_010334.1 PFAM: integrase family protein; KEGG: pcr:Pcryo_1368 phage integrase; integrase family protein 2654836 5906379 Shal_2192 Shewanella halifaxensis HAW-EB4 integrase family protein YP_001674410.1 2653289 R 458817 CDS YP_001674411.1 167624117 5902795 complement(2654833..2656185) 1 NC_010334.1 KEGG: pcr:Pcryo_1369 phage integrase; phage integrase 2656185 5902795 Shal_2193 Shewanella halifaxensis HAW-EB4 phage integrase YP_001674411.1 2654833 R 458817 CDS YP_001674412.1 167624118 5902796 complement(2658843..2660135) 1 NC_010334.1 PFAM: integrase family protein; KEGG: sbm:Shew185_2174 phage integrase family protein; integrase family protein 2660135 5902796 Shal_2194 Shewanella halifaxensis HAW-EB4 integrase family protein YP_001674412.1 2658843 R 458817 CDS YP_001674413.1 167624119 5906154 complement(2660222..2660467) 1 NC_010334.1 KEGG: sfr:Sfri_2008 hypothetical protein; hypothetical protein 2660467 5906154 Shal_2195 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674413.1 2660222 R 458817 CDS YP_001674414.1 167624120 5906155 complement(2660579..2661043) 1 NC_010334.1 KEGG: son:SO_2365 hypothetical protein; hypothetical protein 2661043 5906155 Shal_2196 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674414.1 2660579 R 458817 CDS YP_001674415.1 167624121 5906136 2661307..2662743 1 NC_010334.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2662743 5906136 Shal_2197 Shewanella halifaxensis HAW-EB4 cbb3-type cytochrome c oxidase subunit I YP_001674415.1 2661307 D 458817 CDS YP_001674416.1 167624122 5906137 2662756..2663370 1 NC_010334.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2663370 5906137 Shal_2198 Shewanella halifaxensis HAW-EB4 cbb3-type cytochrome c oxidase subunit II YP_001674416.1 2662756 D 458817 CDS YP_001674417.1 167624123 5907038 2663382..2663558 1 NC_010334.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: sdn:Sden_1849 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit 2663558 5907038 Shal_2199 Shewanella halifaxensis HAW-EB4 cbb3-type cytochrome oxidase subunit YP_001674417.1 2663382 D 458817 CDS YP_001674418.1 167624124 5907023 2663558..2664514 1 NC_010334.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: slo:Shew_1988 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 2664514 5907023 Shal_2200 Shewanella halifaxensis HAW-EB4 cytochrome c oxidase, cbb3-type subunit III YP_001674418.1 2663558 D 458817 CDS YP_001674419.1 167624125 5907024 2664663..2665142 1 NC_010334.1 KEGG: slo:Shew_1989 hypothetical protein; hypothetical protein 2665142 5907024 Shal_2201 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674419.1 2664663 D 458817 CDS YP_001674420.1 167624126 5906883 2665236..2667620 1 NC_010334.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: shm:Shewmr7_1964 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 2667620 5906883 Shal_2202 Shewanella halifaxensis HAW-EB4 heavy metal translocating P-type ATPase YP_001674420.1 2665236 D 458817 CDS YP_001674421.1 167624127 5906884 2667617..2667889 1 NC_010334.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: slo:Shew_1991 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein 2667889 5906884 Shal_2203 Shewanella halifaxensis HAW-EB4 cbb3-type cytochrome oxidase maturation protein YP_001674421.1 2667617 D 458817 CDS YP_001674422.1 167624128 5906420 2667892..2668584 1 NC_010334.1 KEGG: sbl:Sbal_4494 hypothetical protein; hypothetical protein 2668584 5906420 Shal_2204 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674422.1 2667892 D 458817 CDS YP_001674423.1 167624129 5906421 2668642..2669394 1 NC_010334.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2669394 5906421 Shal_2205 Shewanella halifaxensis HAW-EB4 fumarate/nitrate reduction transcriptional regulator YP_001674423.1 2668642 D 458817 CDS YP_001674424.1 167624130 5906380 2669486..2670418 1 NC_010334.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2670418 5906380 Shal_2206 Shewanella halifaxensis HAW-EB4 universal stress protein UspE YP_001674424.1 2669486 D 458817 CDS YP_001674425.1 167624131 5906381 2670499..2671434 1 NC_010334.1 PFAM: PP-loop domain protein; KEGG: shw:Sputw3181_2056 PP-loop domain protein; PP-loop domain-containing protein 2671434 5906381 Shal_2207 Shewanella halifaxensis HAW-EB4 PP-loop domain-containing protein YP_001674425.1 2670499 D 458817 CDS YP_001674426.1 167624132 5906262 complement(2671498..2672121) 1 NC_010334.1 KEGG: slo:Shew_1996 hypothetical protein; hypothetical protein 2672121 5906262 Shal_2208 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674426.1 2671498 R 458817 CDS YP_001674427.1 167624133 5906263 complement(2672099..2672926) 1 NC_010334.1 KEGG: slo:Shew_1997 Bax protein, putative; Bax protein 2672926 5906263 Shal_2209 Shewanella halifaxensis HAW-EB4 Bax protein YP_001674427.1 2672099 R 458817 CDS YP_001674428.1 167624134 5906186 2673087..2673998 1 NC_010334.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: slo:Shew_1998 protein of unknown function UPF0052 and CofD; hypothetical protein 2673998 5906186 Shal_2210 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674428.1 2673087 D 458817 CDS YP_001674429.1 167624135 5906187 2674253..2674771 1 NC_010334.1 PFAM: HPP family protein?; KEGG: vpa:VPA1561 hypothetical protein; HPP family protein 2674771 5906187 Shal_2211 Shewanella halifaxensis HAW-EB4 HPP family protein YP_001674429.1 2674253 D 458817 CDS YP_001674430.1 167624136 5906175 complement(2674889..2676082) 1 NC_010334.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2676082 5906175 Shal_2212 Shewanella halifaxensis HAW-EB4 aromatic amino acid aminotransferase YP_001674430.1 2674889 R 458817 CDS YP_001674431.1 167624137 5906176 complement(2676410..2677696) 1 NC_010334.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2677696 5906176 Shal_2213 Shewanella halifaxensis HAW-EB4 seryl-tRNA synthetase YP_001674431.1 2676410 R 458817 CDS YP_001674432.1 167624138 5906103 complement(2677715..2678089) 1 NC_010334.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2678089 5906103 Shal_2214 Shewanella halifaxensis HAW-EB4 camphor resistance protein CrcB YP_001674432.1 2677715 R 458817 CDS YP_001674433.1 167624139 5906104 complement(2678082..2679413) 1 NC_010334.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: slo:Shew_2022 AAA ATPase, central domain protein; recombination factor protein RarA 2679413 5906104 Shal_2215 Shewanella halifaxensis HAW-EB4 recombination factor protein RarA YP_001674433.1 2678082 R 458817 CDS YP_001674434.1 167624140 5905986 complement(2679423..2680049) 1 NC_010334.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: spc:Sputcn32_2010 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 2680049 5905986 Shal_2216 Shewanella halifaxensis HAW-EB4 outer membrane lipoprotein carrier protein LolA YP_001674434.1 2679423 R 458817 CDS YP_001674435.1 167624141 5905987 complement(2680124..2682706) 1 NC_010334.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: slo:Shew_2024 cell divisionFtsK/SpoIIIE; cell division protein FtsK 2682706 5905987 Shal_2217 Shewanella halifaxensis HAW-EB4 cell division protein FtsK YP_001674435.1 2680124 R 458817 CDS YP_001674436.1 167624142 5905169 complement(2682896..2683399) 1 NC_010334.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 2683399 5905169 Shal_2218 Shewanella halifaxensis HAW-EB4 leucine-responsive transcriptional regulator YP_001674436.1 2682896 R 458817 CDS YP_001674437.1 167624143 5904974 2683580..2684695 1 NC_010334.1 TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: slo:Shew_2026 alanine dehydrogenase; alanine dehydrogenase 2684695 5904974 Shal_2219 Shewanella halifaxensis HAW-EB4 alanine dehydrogenase YP_001674437.1 2683580 D 458817 CDS YP_001674438.1 167624144 5904975 complement(2685041..2685724) 1 NC_010334.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: saz:Sama_1718 response regulator receiver protein; two component transcriptional regulator 2685724 5904975 Shal_2220 Shewanella halifaxensis HAW-EB4 two component transcriptional regulator YP_001674438.1 2685041 R 458817 CDS YP_001674439.1 167624145 5904629 complement(2685930..2687702) 1 NC_010334.1 PFAM: protein of unknown function DUF885; KEGG: slo:Shew_1935 protein of unknown function DUF885; hypothetical protein 2687702 5904629 Shal_2221 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674439.1 2685930 R 458817 CDS YP_001674440.1 167624146 5904630 complement(2687898..2689847) 1 NC_010334.1 KEGG: pin:Ping_3396 23S rRNA (Gm2251)-methyltransferase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 2689847 5904630 Shal_2222 Shewanella halifaxensis HAW-EB4 ATP-dependent DNA helicase RecQ YP_001674440.1 2687898 R 458817 CDS YP_001674441.1 167624147 5904563 complement(2689906..2690787) 1 NC_010334.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: slo:Shew_1933 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 2690787 5904563 Shal_2223 Shewanella halifaxensis HAW-EB4 endonuclease/exonuclease/phosphatase YP_001674441.1 2689906 R 458817 CDS YP_001674442.1 167624148 5904564 2690957..2692414 1 NC_010334.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 2692414 cls 5904564 cls Shewanella halifaxensis HAW-EB4 cardiolipin synthetase YP_001674442.1 2690957 D 458817 CDS YP_001674443.1 167624149 5903426 2692570..2692764 1 NC_010334.1 hypothetical protein 2692764 5903426 Shal_2225 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674443.1 2692570 D 458817 CDS YP_001674444.1 167624150 5903427 complement(2693235..2694971) 1 NC_010334.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 2694971 ushA 5903427 ushA Shewanella halifaxensis HAW-EB4 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic YP_001674444.1 2693235 R 458817 CDS YP_001674445.1 167624151 5906798 complement(2695069..2697138) 1 NC_010334.1 PFAM: Endonuclease I; KEGG: pat:Patl_1033 endonuclease I; endonuclease I 2697138 5906798 Shal_2227 Shewanella halifaxensis HAW-EB4 endonuclease I YP_001674445.1 2695069 R 458817 CDS YP_001674446.1 167624152 5906799 complement(2697232..2700372) 1 NC_010334.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: vvy:VV3056 predicted extracellular nuclease; endonuclease/exonuclease/phosphatase 2700372 5906799 Shal_2228 Shewanella halifaxensis HAW-EB4 endonuclease/exonuclease/phosphatase YP_001674446.1 2697232 R 458817 CDS YP_001674447.1 167624153 5903846 complement(2700414..2701466) 1 NC_010334.1 KEGG: vvy:VV3057 hypothetical protein; hypothetical protein 2701466 5903846 Shal_2229 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674447.1 2700414 R 458817 CDS YP_001674448.1 167624154 5906193 complement(2703106..2705100) 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: sbm:Shew185_1950 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2705100 5906193 Shal_2230 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis sensory transducer YP_001674448.1 2703106 R 458817 CDS YP_001674449.1 167624155 5905025 complement(2705291..2706358) 1 NC_010334.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2706358 5905025 Shal_2231 Shewanella halifaxensis HAW-EB4 quinolinate synthetase YP_001674449.1 2705291 R 458817 CDS YP_001674450.1 167624156 5905026 complement(2706488..2708128) 1 NC_010334.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: spc:Sputcn32_1887 catalytic domain of components of various dehydrogenase complexes; dihydrolipoamide acetyltransferase 2708128 5905026 Shal_2232 Shewanella halifaxensis HAW-EB4 dihydrolipoamide acetyltransferase YP_001674450.1 2706488 R 458817 CDS YP_001674451.1 167624157 5904497 complement(2708138..2709115) 1 NC_010334.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: sbl:Sbal_4507 hypothetical protein; transketolase central region 2709115 5904497 Shal_2233 Shewanella halifaxensis HAW-EB4 transketolase central region YP_001674451.1 2708138 R 458817 CDS YP_001674452.1 167624158 5904498 complement(2709119..2710297) 1 NC_010334.1 PFAM: dehydrogenase E1 component; KEGG: slo:Shew_1925 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); 3-methyl-2-oxobutanoate dehydrogenase 2710297 5904498 Shal_2234 Shewanella halifaxensis HAW-EB4 3-methyl-2-oxobutanoate dehydrogenase YP_001674452.1 2709119 R 458817 CDS YP_001674453.1 167624159 5905107 complement(2710480..2711580) 1 NC_010334.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 2711580 5905107 Shal_2235 Shewanella halifaxensis HAW-EB4 succinylglutamate desuccinylase YP_001674453.1 2710480 R 458817 CDS YP_001674454.1 167624160 5905108 2711798..2712277 1 NC_010334.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: saz:Sama_1707 protein-methionine-S-oxide reductase; peptide methionine sulfoxide reductase 2712277 5905108 Shal_2236 Shewanella halifaxensis HAW-EB4 peptide methionine sulfoxide reductase YP_001674454.1 2711798 D 458817 CDS YP_001674455.1 167624161 5904997 complement(2713279..2713722) 1 NC_010334.1 KEGG: sfr:Sfri_2052 hypothetical protein; hypothetical protein 2713722 5904997 Shal_2237 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674455.1 2713279 R 458817 CDS YP_001674456.1 167624162 5905955 complement(2714411..2716051) 1 NC_010334.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2716051 5905955 Shal_2238 Shewanella halifaxensis HAW-EB4 phosphoglucomutase YP_001674456.1 2714411 R 458817 CDS YP_001674457.1 167624163 5905956 complement(2716127..2716747) 1 NC_010334.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 2716747 5905956 Shal_2239 Shewanella halifaxensis HAW-EB4 replication initiation regulator SeqA YP_001674457.1 2716127 R 458817 CDS YP_001674458.1 167624164 5905540 2716965..2717723 1 NC_010334.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: shm:Shewmr7_1942 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2717723 5905540 Shal_2240 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase fold protein YP_001674458.1 2716965 D 458817 CDS YP_001674459.1 167624165 5905541 2717822..2718043 1 NC_010334.1 KEGG: slo:Shew_1919 hypothetical protein; hypothetical protein 2718043 5905541 Shal_2241 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674459.1 2717822 D 458817 CDS YP_001674460.1 167624166 5905228 2718055..2718327 1 NC_010334.1 KEGG: slo:Shew_1918 CopG domain protein DNA-binding domain protein; LexA regulated protein 2718327 5905228 Shal_2242 Shewanella halifaxensis HAW-EB4 LexA regulated protein YP_001674460.1 2718055 D 458817 CDS YP_001674461.1 167624167 5905229 2718385..2718912 1 NC_010334.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 2718912 5905229 Shal_2243 Shewanella halifaxensis HAW-EB4 flavodoxin FldA YP_001674461.1 2718385 D 458817 CDS YP_001674462.1 167624168 5905960 2719062..2720255 1 NC_010334.1 KEGG: shm:Shewmr7_1938 hypothetical protein; hypothetical protein 2720255 5905960 Shal_2244 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674462.1 2719062 D 458817 CDS YP_001674463.1 167624169 5905961 2720300..2720860 1 NC_010334.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2720860 5905961 Shal_2245 Shewanella halifaxensis HAW-EB4 elongation factor P YP_001674463.1 2720300 D 458817 CDS YP_001674464.1 167624170 5906867 2721215..2722429 1 NC_010334.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2722429 5906867 Shal_2246 Shewanella halifaxensis HAW-EB4 aminotransferase AlaT YP_001674464.1 2721215 D 458817 CDS YP_001674465.1 167624171 5906868 2722644..2723231 1 NC_010334.1 KEGG: son:SO_2484 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; hypothetical protein 2723231 5906868 Shal_2247 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674465.1 2722644 D 458817 CDS YP_001674466.1 167624172 5905848 2723252..2724586 1 NC_010334.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2724586 5905848 Shal_2248 Shewanella halifaxensis HAW-EB4 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_001674466.1 2723252 D 458817 CDS YP_001674467.1 167624173 5905849 complement(2724737..2725360) 1 NC_010334.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: slo:Shew_1911 multiple antibiotic resistance (MarC)-related protein; hypothetical protein 2725360 5905849 Shal_2249 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674467.1 2724737 R 458817 CDS YP_001674468.1 167624174 5904194 2725691..2728306 1 NC_010334.1 PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: slo:Shew_1910 iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2728306 5904194 Shal_2250 Shewanella halifaxensis HAW-EB4 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_001674468.1 2725691 D 458817 CDS YP_001674469.1 167624175 5904195 complement(2728391..2730565) 1 NC_010334.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 2730565 5904195 Shal_2251 Shewanella halifaxensis HAW-EB4 malate synthase G YP_001674469.1 2728391 R 458817 CDS YP_001674470.1 167624176 5903934 complement(2730808..2731752) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfr:Sfri_3138 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 2731752 5903934 Shal_2252 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001674470.1 2730808 R 458817 CDS YP_001674471.1 167624177 5903935 2731863..2733446 1 NC_010334.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 2733446 5903935 Shal_2253 Shewanella halifaxensis HAW-EB4 isocitrate lyase YP_001674471.1 2731863 D 458817 CDS YP_001674472.1 167624178 5904174 2733919..2734500 1 NC_010334.1 KEGG: sdn:Sden_3340 methylation; hypothetical protein 2734500 5904174 Shal_2254 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674472.1 2733919 D 458817 CDS YP_001674473.1 167624179 5904175 complement(2734667..2736718) 1 NC_010334.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: slo:Shew_1905 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 2736718 5904175 Shal_2255 Shewanella halifaxensis HAW-EB4 peptidase S9 prolyl oligopeptidase YP_001674473.1 2734667 R 458817 CDS YP_001674474.1 167624180 5903787 complement(2736908..2738428) 1 NC_010334.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: slo:Shew_1904 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 2738428 5903787 Shal_2256 Shewanella halifaxensis HAW-EB4 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha YP_001674474.1 2736908 R 458817 CDS YP_001674475.1 167624181 5903980 2738607..2740244 1 NC_010334.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: shw:Sputw3181_2219 para-aminobenzoate synthase, subunit I; para-aminobenzoate synthase subunit I 2740244 5903980 Shal_2257 Shewanella halifaxensis HAW-EB4 para-aminobenzoate synthase subunit I YP_001674475.1 2738607 D 458817 CDS YP_001674476.1 167624182 5903981 2740296..2740877 1 NC_010334.1 PFAM: NUDIX hydrolase; KEGG: son:SO_2220 MutT/nudix family protein; NUDIX hydrolase 2740877 5903981 Shal_2258 Shewanella halifaxensis HAW-EB4 NUDIX hydrolase YP_001674476.1 2740296 D 458817 CDS YP_001674477.1 167624183 5903506 complement(2740982..2741317) 1 NC_010334.1 KEGG: sdn:Sden_1957 hypothetical protein; hypothetical protein 2741317 5903506 Shal_2259 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674477.1 2740982 R 458817 CDS YP_001674478.1 167624184 5903507 2741469..2742869 1 NC_010334.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2742869 asnC 5903507 asnC Shewanella halifaxensis HAW-EB4 asparaginyl-tRNA synthetase YP_001674478.1 2741469 D 458817 CDS YP_001674479.1 167624185 5903575 2743376..2744512 1 NC_010334.1 KEGG: slo:Shew_1765 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein; hydrogenase (NiFe) small subunit HydA 2744512 5903575 Shal_2261 Shewanella halifaxensis HAW-EB4 hydrogenase (NiFe) small subunit HydA YP_001674479.1 2743376 D 458817 CDS YP_001674480.1 167624186 5903576 2744515..2746218 1 NC_010334.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: slo:Shew_1764 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase large subunit 2746218 5903576 Shal_2262 Shewanella halifaxensis HAW-EB4 nickel-dependent hydrogenase large subunit YP_001674480.1 2744515 D 458817 CDS YP_001674481.1 167624187 5905567 2746233..2746901 1 NC_010334.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: slo:Shew_1763 Ni/Fe-hydrogenase, b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 2746901 5905567 Shal_2263 Shewanella halifaxensis HAW-EB4 Ni/Fe-hydrogenase, b-type cytochrome subunit YP_001674481.1 2746233 D 458817 CDS YP_001674482.1 167624188 5905568 2746911..2747468 1 NC_010334.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: slo:Shew_1762 hydrogenase expression/formation protein; hydrogenase maturation protease 2747468 5905568 Shal_2264 Shewanella halifaxensis HAW-EB4 hydrogenase maturation protease YP_001674482.1 2746911 D 458817 CDS YP_001674483.1 167624189 5906123 2747455..2749236 1 NC_010334.1 KEGG: slo:Shew_1761 hypothetical protein; hypothetical protein 2749236 5906123 Shal_2265 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674483.1 2747455 D 458817 CDS YP_001674484.1 167624190 5906124 2749250..2751637 1 NC_010334.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: spc:Sputcn32_2093 (NiFe) hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF 2751637 5906124 Shal_2266 Shewanella halifaxensis HAW-EB4 (NiFe) hydrogenase maturation protein HypF YP_001674484.1 2749250 D 458817 CDS YP_001674485.1 167624191 5906495 2751737..2752498 1 NC_010334.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: shw:Sputw3181_2173 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 2752498 5906495 Shal_2267 Shewanella halifaxensis HAW-EB4 hydrogenase nickel incorporation protein HypB YP_001674485.1 2751737 D 458817 CDS YP_001674486.1 167624192 5906496 2752498..2752746 1 NC_010334.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: saz:Sama_1672 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF 2752746 5906496 Shal_2268 Shewanella halifaxensis HAW-EB4 hydrogenase assembly chaperone HypC/HupF YP_001674486.1 2752498 D 458817 CDS YP_001674487.1 167624193 5907002 2752746..2753867 1 NC_010334.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: slo:Shew_1757 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD 2753867 5907002 Shal_2269 Shewanella halifaxensis HAW-EB4 hydrogenase expression/formation protein HypD YP_001674487.1 2752746 D 458817 CDS YP_001674488.1 167624194 5907003 2753864..2754880 1 NC_010334.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: slo:Shew_1756 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2754880 5907003 Shal_2270 Shewanella halifaxensis HAW-EB4 hydrogenase expression/formation protein HypE YP_001674488.1 2753864 D 458817 CDS YP_001674489.1 167624195 5903880 2754880..2755227 1 NC_010334.1 PFAM: hydrogenase expression/synthesis HypA; KEGG: shw:Sputw3181_2177 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA 2755227 5903880 Shal_2271 Shewanella halifaxensis HAW-EB4 hydrogenase nickel incorporation protein HypA YP_001674489.1 2754880 D 458817 CDS YP_001674490.1 167624196 5903881 complement(2755415..2756422) 1 NC_010334.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ppr:PBPRB0600 hypothetical protein; hypothetical protein 2756422 5903881 Shal_2272 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674490.1 2755415 R 458817 CDS YP_001674491.1 167624197 5903644 complement(2756499..2757461) 1 NC_010334.1 PFAM: type II secretion system protein; KEGG: ppr:PBPRB0601 hypothetical putative tight adherence TadC-related transmembrane protein; type II secretion system protein 2757461 5903644 Shal_2273 Shewanella halifaxensis HAW-EB4 type II secretion system protein YP_001674491.1 2756499 R 458817 CDS YP_001674492.1 167624198 5903645 complement(2757463..2758440) 1 NC_010334.1 PFAM: type II secretion system protein; KEGG: vpa:VP2411 putative tight adherence TadB-related transmembrane protein; type II secretion system protein 2758440 5903645 Shal_2274 Shewanella halifaxensis HAW-EB4 type II secretion system protein YP_001674492.1 2757463 R 458817 CDS YP_001674493.1 167624199 5903918 complement(2758452..2759780) 1 NC_010334.1 PFAM: type II secretion system protein E; KEGG: ppr:PBPRB0603 putative pilus assembly protein; type II secretion system protein E 2759780 5903918 Shal_2275 Shewanella halifaxensis HAW-EB4 type II secretion system protein E YP_001674493.1 2758452 R 458817 CDS YP_001674494.1 167624200 5903972 complement(2759782..2761008) 1 NC_010334.1 KEGG: vvy:VV2654 flp pilus assembly protein, ATPase CpaE; Flp pilus assembly protein ATPase CpaE-like protein 2761008 5903972 Shal_2276 Shewanella halifaxensis HAW-EB4 Flp pilus assembly protein ATPase CpaE-like protein YP_001674494.1 2759782 R 458817 CDS YP_001674495.1 167624201 5903973 complement(2761101..2761550) 1 NC_010334.1 PFAM: TadE family protein; KEGG: ppr:PBPRB0605 hypothetical protein; TadE family protein 2761550 5903973 Shal_2277 Shewanella halifaxensis HAW-EB4 TadE family protein YP_001674495.1 2761101 R 458817 CDS YP_001674496.1 167624202 5904110 complement(2761547..2762026) 1 NC_010334.1 PFAM: TadE family protein; KEGG: ppr:PBPRB0606 hypothetical protein; TadE family protein 2762026 5904110 Shal_2278 Shewanella halifaxensis HAW-EB4 TadE family protein YP_001674496.1 2761547 R 458817 CDS YP_001674497.1 167624203 5904111 complement(2762037..2763377) 1 NC_010334.1 KEGG: ppr:PBPRB0607 hypothetical protein; hypothetical protein 2763377 5904111 Shal_2279 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674497.1 2762037 R 458817 CDS YP_001674498.1 167624204 5904196 complement(2763398..2763646) 1 NC_010334.1 hypothetical protein 2763646 5904196 Shal_2280 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674498.1 2763398 R 458817 CDS YP_001674499.1 167624205 5904197 complement(2763724..2765160) 1 NC_010334.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: vvy:VV2660 flp pilus assembly protein, secretin CpaC; type II and III secretion system protein 2765160 5904197 Shal_2281 Shewanella halifaxensis HAW-EB4 type II and III secretion system protein YP_001674499.1 2763724 R 458817 CDS YP_001674500.1 167624206 5903561 complement(2765209..2766021) 1 NC_010334.1 PFAM: SAF domain protein; KEGG: vvu:VV1_1748 flp pilus assembly protein CpaB; SAF domain-containing protein 2766021 5903561 Shal_2282 Shewanella halifaxensis HAW-EB4 SAF domain-containing protein YP_001674500.1 2765209 R 458817 CDS YP_001674501.1 167624207 5903562 complement(2766054..2767376) 1 NC_010334.1 SMART: AAA ATPase; KEGG: ppr:PBPRB0612 hypothetical protein; ATPase AAA 2767376 5903562 Shal_2283 Shewanella halifaxensis HAW-EB4 ATPase AAA YP_001674501.1 2766054 R 458817 CDS YP_001674502.1 167624208 5903668 complement(2767387..2767953) 1 NC_010334.1 PFAM: peptidase A24A prepilin type IV; KEGG: rba:RB5170 similar to type IV prepilin peptidase CpaA; peptidase A24A prepilin type IV 2767953 5903668 Shal_2284 Shewanella halifaxensis HAW-EB4 peptidase A24A prepilin type IV YP_001674502.1 2767387 R 458817 CDS YP_001674503.1 167624209 5903669 complement(2768029..2768226) 1 NC_010334.1 hypothetical protein 2768226 5903669 Shal_2285 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674503.1 2768029 R 458817 CDS YP_001674504.1 167624210 5903186 complement(2768773..2769174) 1 NC_010334.1 KEGG: vvy:VV0172 transposase and inactivated derivative; transposase and inactivated derivative 2769174 5903186 Shal_2286 Shewanella halifaxensis HAW-EB4 transposase and inactivated derivative YP_001674504.1 2768773 R 458817 CDS YP_001674505.1 167624211 5903187 complement(2769167..2770501) 1 NC_010334.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: asa:ASA_1213 hypothetical protein; peptidoglycan-binding domain-containing protein 2770501 5903187 Shal_2287 Shewanella halifaxensis HAW-EB4 peptidoglycan-binding domain-containing protein YP_001674505.1 2769167 R 458817 CDS YP_001674506.1 167624212 5904526 2771079..2773133 1 NC_010334.1 PFAM: sulfatase; KEGG: lpp:lpp2806 hypothetical protein; sulfatase 2773133 5904526 Shal_2288 Shewanella halifaxensis HAW-EB4 sulfatase YP_001674506.1 2771079 D 458817 CDS YP_001674507.1 167624213 5904527 2773217..2775010 1 NC_010334.1 PFAM: glycosyl transferase family 39; glycosyl transferase family protein 2775010 5904527 Shal_2289 Shewanella halifaxensis HAW-EB4 glycosyl transferase family protein YP_001674507.1 2773217 D 458817 CDS YP_001674508.1 167624214 5904860 2775048..2776079 1 NC_010334.1 PFAM: glycosyl transferase family 2; KEGG: rru:Rru_A2124 glycosyl transferase, family 2; glycosyl transferase family protein 2776079 5904860 Shal_2290 Shewanella halifaxensis HAW-EB4 glycosyl transferase family protein YP_001674508.1 2775048 D 458817 CDS YP_001674509.1 167624215 5904861 2776256..2776972 1 NC_010334.1 PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: aba:Acid345_3127 methyltransferase type 11; type 11 methyltransferase 2776972 5904861 Shal_2291 Shewanella halifaxensis HAW-EB4 type 11 methyltransferase YP_001674509.1 2776256 D 458817 CDS YP_001674510.1 167624216 5904897 2776953..2778044 1 NC_010334.1 hypothetical protein 2778044 5904897 Shal_2292 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674510.1 2776953 D 458817 CDS YP_001674511.1 167624217 5904898 2778041..2779093 1 NC_010334.1 PFAM: glycosyl transferase family 9; KEGG: wsu:WS1450 ADP-heptose-LPS heptosyltransferase II (RfaF); glycosyl transferase family protein 2779093 5904898 Shal_2293 Shewanella halifaxensis HAW-EB4 glycosyl transferase family protein YP_001674511.1 2778041 D 458817 CDS YP_001674512.1 167624218 5905082 2779090..2780046 1 NC_010334.1 KEGG: rca:Rcas_4270 hypothetical protein; hypothetical protein 2780046 5905082 Shal_2294 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674512.1 2779090 D 458817 CDS YP_001674513.1 167624219 5904942 complement(2780152..2781366) 1 NC_010334.1 PFAM: Fmu (Sun) domain protein; KEGG: son:SO_2215 sun protein, putative; Fmu (Sun) domain-containing protein 2781366 5904942 Shal_2295 Shewanella halifaxensis HAW-EB4 Fmu (Sun) domain-containing protein YP_001674513.1 2780152 R 458817 CDS YP_001674514.1 167624220 5904943 complement(2781498..2782013) 1 NC_010334.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 2782013 5904943 Shal_2296 Shewanella halifaxensis HAW-EB4 malate synthase YP_001674514.1 2781498 R 458817 CDS YP_001674515.1 167624221 5903422 2782164..2783699 1 NC_010334.1 PFAM: helix-turn-helix domain protein; KEGG: sbm:Shew185_4294 transcriptional regulator, XRE family; XRE family transcriptional regulator 2783699 5903422 Shal_2297 Shewanella halifaxensis HAW-EB4 XRE family transcriptional regulator YP_001674515.1 2782164 D 458817 CDS YP_001674516.1 167624222 5903423 complement(2783810..2784082) 1 NC_010334.1 hypothetical protein 2784082 5903423 Shal_2298 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674516.1 2783810 R 458817 CDS YP_001674517.1 167624223 5905433 complement(2784309..2784806) 1 NC_010334.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: vfi:VF0656 transcription elongation factor; GreA/GreB family elongation factor 2784806 5905433 Shal_2299 Shewanella halifaxensis HAW-EB4 GreA/GreB family elongation factor YP_001674517.1 2784309 R 458817 CDS YP_001674518.1 167624224 5905434 2785123..2785995 1 NC_010334.1 KEGG: rme:Rmet_1758 hypothetical protein; hypothetical protein 2785995 5905434 Shal_2300 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674518.1 2785123 D 458817 CDS YP_001674519.1 167624225 5905561 complement(2786103..2787248) 1 NC_010334.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: sbl:Sbal_2354 cupin 4 family protein; cupin 4 family protein 2787248 5905561 Shal_2301 Shewanella halifaxensis HAW-EB4 cupin 4 family protein YP_001674519.1 2786103 R 458817 CDS YP_001674520.1 167624226 5905562 2787445..2788086 1 NC_010334.1 KEGG: ppr:PBPRB1229 putative DNA polymerase III; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2788086 5905562 Shal_2302 Shewanella halifaxensis HAW-EB4 DNA polymerase III subunit epsilon YP_001674520.1 2787445 D 458817 CDS YP_001674521.1 167624227 5906991 complement(2788315..2789010) 1 NC_010334.1 KEGG: shn:Shewana3_2253 hypothetical protein; hypothetical protein 2789010 5906991 Shal_2303 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674521.1 2788315 R 458817 CDS YP_001674522.1 167624228 5906992 2789399..2791039 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: slo:Shew_1868 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2791039 5906992 Shal_2304 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis sensory transducer YP_001674522.1 2789399 D 458817 CDS YP_001674523.1 167624229 5906817 2791142..2791528 1 NC_010334.1 KEGG: slo:Shew_1867 hypothetical protein; hypothetical protein 2791528 5906817 Shal_2305 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674523.1 2791142 D 458817 CDS YP_001674524.1 167624230 5906818 2791600..2791857 1 NC_010334.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: shn:Shewana3_2256 phosphocarrier, HPr family; phosphotransferase system, phosphocarrier protein HPr 2791857 5906818 Shal_2306 Shewanella halifaxensis HAW-EB4 phosphotransferase system, phosphocarrier protein HPr YP_001674524.1 2791600 D 458817 CDS YP_001674525.1 167624231 5906690 2791867..2793570 1 NC_010334.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: son:SO_2237 phosphotransferase system, enzyme I; phosphoenolpyruvate-protein phosphotransferase 2793570 5906690 Shal_2307 Shewanella halifaxensis HAW-EB4 phosphoenolpyruvate-protein phosphotransferase YP_001674525.1 2791867 D 458817 CDS YP_001674526.1 167624232 5906691 2793632..2794141 1 NC_010334.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2794141 5906691 Shal_2308 Shewanella halifaxensis HAW-EB4 PTS system glucose-specific transporter YP_001674526.1 2793632 D 458817 CDS YP_001674527.1 167624233 5906241 2794269..2794658 1 NC_010334.1 PFAM: arsenate reductase and related; KEGG: shw:Sputw3181_1889 arsenate reductase; arsenate reductase-like protein 2794658 5906241 Shal_2309 Shewanella halifaxensis HAW-EB4 arsenate reductase-like protein YP_001674527.1 2794269 D 458817 CDS YP_001674528.1 167624234 5906242 2794655..2795800 1 NC_010334.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2795800 5906242 Shal_2310 Shewanella halifaxensis HAW-EB4 succinyl-diaminopimelate desuccinylase YP_001674528.1 2794655 D 458817 CDS YP_001674529.1 167624235 5906227 2795791..2796492 1 NC_010334.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: sfr:Sfri_1764 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 2796492 5906227 Shal_2311 Shewanella halifaxensis HAW-EB4 peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YP_001674529.1 2795791 D 458817 CDS YP_001674530.1 167624236 5906228 2796521..2797369 1 NC_010334.1 PFAM: alpha/beta hydrolase fold; KEGG: shw:Sputw3181_1886 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2797369 5906228 Shal_2312 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase fold protein YP_001674530.1 2796521 D 458817 CDS YP_001674531.1 167624237 5906071 2797620..2798234 1 NC_010334.1 PFAM: carbonic anhydrase; KEGG: slo:Shew_1859 carbonate dehydratase; carbonate dehydratase 2798234 5906071 Shal_2313 Shewanella halifaxensis HAW-EB4 carbonate dehydratase YP_001674531.1 2797620 D 458817 CDS YP_001674532.1 167624238 5904717 2798436..2799620 1 NC_010334.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: slo:Shew_1858 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 2799620 5904717 Shal_2314 Shewanella halifaxensis HAW-EB4 DegT/DnrJ/EryC1/StrS aminotransferase YP_001674532.1 2798436 D 458817 CDS YP_001674533.1 167624239 5904718 2799701..2800771 1 NC_010334.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: slo:Shew_1857 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2800771 5904718 Shal_2315 Shewanella halifaxensis HAW-EB4 iron-containing alcohol dehydrogenase YP_001674533.1 2799701 D 458817 CDS YP_001674534.1 167624240 5906584 2800840..2801577 1 NC_010334.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2801577 5906584 Shal_2316 Shewanella halifaxensis HAW-EB4 3-deoxy-manno-octulosonate cytidylyltransferase YP_001674534.1 2800840 D 458817 CDS YP_001674535.1 167624241 5906585 2801591..2801824 1 NC_010334.1 KEGG: slo:Shew_1855 hypothetical protein; hypothetical protein 2801824 5906585 Shal_2317 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674535.1 2801591 D 458817 CDS YP_001674536.1 167624242 5905170 complement(2801972..2805064) 1 NC_010334.1 PFAM: acriflavin resistance protein; KEGG: slo:Shew_1852 acriflavin resistance protein; acriflavin resistance protein 2805064 5905170 Shal_2318 Shewanella halifaxensis HAW-EB4 acriflavin resistance protein YP_001674536.1 2801972 R 458817 CDS YP_001674537.1 167624243 5905171 complement(2805061..2806140) 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_1851 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2806140 5905171 Shal_2319 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001674537.1 2805061 R 458817 CDS YP_001674538.1 167624244 5906847 complement(2806322..2807419) 1 NC_010334.1 PFAM: NlpBDapX family lipoprotein; KEGG: slo:Shew_1849 NlpBDapX family lipoprotein; NlpB/DapX family lipoprotein 2807419 5906847 Shal_2320 Shewanella halifaxensis HAW-EB4 NlpB/DapX family lipoprotein YP_001674538.1 2806322 R 458817 CDS YP_001674539.1 167624245 5906848 complement(2807423..2808307) 1 NC_010334.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2808307 5906848 Shal_2321 Shewanella halifaxensis HAW-EB4 dihydrodipicolinate synthase YP_001674539.1 2807423 R 458817 CDS YP_001674540.1 167624246 5903381 2808547..2809083 1 NC_010334.1 PFAM: amino acid-binding ACT domain protein; KEGG: slo:Shew_1847 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 2809083 5903381 Shal_2322 Shewanella halifaxensis HAW-EB4 amino acid-binding ACT domain-containing protein YP_001674540.1 2808547 D 458817 CDS YP_001674541.1 167624247 5903382 2809093..2809575 1 NC_010334.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shw:Sputw3181_2325 redoxin domain protein; alkyl hydroperoxide reductase 2809575 5903382 Shal_2323 Shewanella halifaxensis HAW-EB4 alkyl hydroperoxide reductase YP_001674541.1 2809093 D 458817 CDS YP_001674542.1 167624248 5903218 complement(2809660..2810274) 1 NC_010334.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: slo:Shew_1845 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 2810274 5903218 Shal_2324 Shewanella halifaxensis HAW-EB4 lysine exporter protein LysE/YggA YP_001674542.1 2809660 R 458817 CDS YP_001674543.1 167624249 5903219 2810404..2811294 1 NC_010334.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 2811294 5903219 Shal_2325 Shewanella halifaxensis HAW-EB4 chromosome replication initiation inhibitor protein YP_001674543.1 2810404 D 458817 CDS YP_001674544.1 167624250 5903893 complement(2811356..2812477) 1 NC_010334.1 PFAM: protein of unknown function UPF0118; KEGG: slo:Shew_1843 protein of unknown function UPF0118; hypothetical protein 2812477 5903893 Shal_2326 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674544.1 2811356 R 458817 CDS YP_001674545.1 167624251 5903894 complement(2812568..2812783) 1 NC_010334.1 PFAM: SirA family protein; KEGG: sdn:Sden_1648 hypothetical protein; SirA family protein 2812783 5903894 Shal_2327 Shewanella halifaxensis HAW-EB4 SirA family protein YP_001674545.1 2812568 R 458817 CDS YP_001674546.1 167624252 5903341 2812895..2814352 1 NC_010334.1 PFAM: peptidase M48 Ste24p; SMART: Tetratricopeptide domain protein; KEGG: sbm:Shew185_1783 peptidase M48 Ste24p; peptidase M48 Ste24p 2814352 5903341 Shal_2328 Shewanella halifaxensis HAW-EB4 peptidase M48 Ste24p YP_001674546.1 2812895 D 458817 CDS YP_001674547.1 167624253 5903342 2814429..2814779 1 NC_010334.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: spc:Sputcn32_1694 arsenate reductase; arsenate reductase 2814779 5903342 Shal_2329 Shewanella halifaxensis HAW-EB4 arsenate reductase YP_001674547.1 2814429 D 458817 CDS YP_001674548.1 167624254 5903356 2814792..2815160 1 NC_010334.1 KEGG: shm:Shewmr7_2421 hypothetical protein; hypothetical protein 2815160 5903356 Shal_2330 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674548.1 2814792 D 458817 CDS YP_001674549.1 167624255 5903357 2815403..2817340 1 NC_010334.1 KEGG: sbm:Shew185_1780 hypothetical protein; hypothetical protein 2817340 5903357 Shal_2331 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674549.1 2815403 D 458817 CDS YP_001674550.1 167624256 5903389 complement(2817420..2818130) 1 NC_010334.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 2818130 5903389 Shal_2332 Shewanella halifaxensis HAW-EB4 DNA replication initiation factor YP_001674550.1 2817420 R 458817 CDS YP_001674551.1 167624257 5903390 complement(2818204..2819316) 1 NC_010334.1 KEGG: slo:Shew_1837 hypothetical protein; hypothetical protein 2819316 5903390 Shal_2333 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674551.1 2818204 R 458817 CDS YP_001674552.1 167624258 5903271 2819493..2820749 1 NC_010334.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: slo:Shew_1836 uracil-xanthine permease; uracil-xanthine permease 2820749 5903271 Shal_2334 Shewanella halifaxensis HAW-EB4 uracil-xanthine permease YP_001674552.1 2819493 D 458817 CDS YP_001674553.1 167624259 5903272 complement(2820872..2821213) 1 NC_010334.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: sfr:Sfri_1748 glutaredoxin-like protein; glutaredoxin-like protein 2821213 5903272 Shal_2335 Shewanella halifaxensis HAW-EB4 glutaredoxin-like protein YP_001674553.1 2820872 R 458817 CDS YP_001674554.1 167624260 5904753 2821439..2822023 1 NC_010334.1 PFAM: manganese and iron superoxide dismutase; KEGG: spc:Sputcn32_1687 superoxide dismutase; superoxide dismutase 2822023 5904753 Shal_2336 Shewanella halifaxensis HAW-EB4 superoxide dismutase YP_001674554.1 2821439 D 458817 CDS YP_001674555.1 167624261 5904754 2822253..2824187 1 NC_010334.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: slo:Shew_1833 putative serine protein kinase, PrkA; putative serine protein kinase PrkA 2824187 5904754 Shal_2337 Shewanella halifaxensis HAW-EB4 putative serine protein kinase PrkA YP_001674555.1 2822253 D 458817 CDS YP_001674556.1 167624262 5904731 2824237..2825505 1 NC_010334.1 PFAM: protein of unknown function DUF444; KEGG: slo:Shew_1832 protein of unknown function DUF444; hypothetical protein 2825505 5904731 Shal_2338 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674556.1 2824237 D 458817 CDS YP_001674557.1 167624263 5904732 2825515..2827038 1 NC_010334.1 PFAM: SpoVR family protein; KEGG: slo:Shew_1831 SpoVR family protein; SpoVR family protein 2827038 5904732 Shal_2339 Shewanella halifaxensis HAW-EB4 SpoVR family protein YP_001674557.1 2825515 D 458817 CDS YP_001674558.1 167624264 5904729 complement(2827100..2827387) 1 NC_010334.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2827387 5904729 Shal_2340 Shewanella halifaxensis HAW-EB4 50S ribosomal protein L25 YP_001674558.1 2827100 R 458817 CDS YP_001674559.1 167624265 5904730 complement(2827540..2828088) 1 NC_010334.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: shw:Sputw3181_2115 protein of unknown function DUF882; hypothetical protein 2828088 5904730 Shal_2341 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674559.1 2827540 R 458817 CDS YP_001674560.1 167624266 5904700 complement(2828185..2829579) 1 NC_010334.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: slo:Shew_1828 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain-containing protein 2829579 5904700 Shal_2342 Shewanella halifaxensis HAW-EB4 peptidoglycan-binding domain-containing protein YP_001674560.1 2828185 R 458817 CDS YP_001674561.1 167624267 5904633 complement(2829735..2830310) 1 NC_010334.1 KEGG: slo:Shew_1827 methylation site containing protein; methylation site containing protein 2830310 5904633 Shal_2343 Shewanella halifaxensis HAW-EB4 methylation site containing protein YP_001674561.1 2829735 R 458817 CDS YP_001674562.1 167624268 5904373 complement(2832237..2832785) 1 NC_010334.1 KEGG: slo:Shew_1826 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2832785 5904373 Shal_2344 Shewanella halifaxensis HAW-EB4 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001674562.1 2832237 R 458817 CDS YP_001674563.1 167624269 5904241 complement(2832833..2834662) 1 NC_010334.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2834662 uvrC 5904241 uvrC Shewanella halifaxensis HAW-EB4 excinuclease ABC subunit C YP_001674563.1 2832833 R 458817 CDS YP_001674564.1 167624270 5904242 complement(2834680..2835324) 1 NC_010334.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 2835324 5904242 Shal_2346 Shewanella halifaxensis HAW-EB4 response regulator YP_001674564.1 2834680 R 458817 CDS YP_001674565.1 167624271 5904225 2835853..2837565 1 NC_010334.1 KEGG: son:SO_1857 hypothetical ATP-dependent protease; ATP-dependent protease 2837565 5904225 Shal_2347 Shewanella halifaxensis HAW-EB4 ATP-dependent protease YP_001674565.1 2835853 D 458817 CDS YP_001674566.1 167624272 5903378 2837633..2838148 1 NC_010334.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 2838148 5903378 Shal_2348 Shewanella halifaxensis HAW-EB4 3-hydroxydecanoyl-ACP dehydratase YP_001674566.1 2837633 D 458817 CDS YP_001674567.1 167624273 5904137 complement(2838277..2838453) 1 NC_010334.1 PFAM: ribosome modulation factor; KEGG: slo:Shew_1816 ribosome modulation factor; ribosome modulation factor 2838453 5904137 Shal_2349 Shewanella halifaxensis HAW-EB4 ribosome modulation factor YP_001674567.1 2838277 R 458817 CDS YP_001674568.1 167624274 5904138 complement(2838651..2840525) 1 NC_010334.1 KEGG: shn:Shewana3_1604 hypothetical protein; hypothetical protein 2840525 5904138 Shal_2350 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674568.1 2838651 R 458817 CDS YP_001674569.1 167624275 5903204 complement(2840555..2842489) 1 NC_010334.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 2842489 5903204 Shal_2351 Shewanella halifaxensis HAW-EB4 ABC transporter ATPase YP_001674569.1 2840555 R 458817 CDS YP_001674570.1 167624276 5903205 complement(2842491..2842652) 1 NC_010334.1 KEGG: shw:Sputw3181_2392 glutaredoxin 2; glutaredoxin 2842652 5903205 Shal_2352 Shewanella halifaxensis HAW-EB4 glutaredoxin YP_001674570.1 2842491 R 458817 CDS YP_001674571.1 167624277 5902817 complement(2842717..2844852) 1 NC_010334.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 2844852 rlmL 5902817 rlmL Shewanella halifaxensis HAW-EB4 23S rRNA m(2)G2445 methyltransferase YP_001674571.1 2842717 R 458817 CDS YP_001674572.1 167624278 5902818 2845558..2846157 1 NC_010334.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: shm:Shewmr7_2838 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 2846157 5902818 Shal_2354 Shewanella halifaxensis HAW-EB4 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001674572.1 2845558 D 458817 CDS YP_001674573.1 167624279 5902671 complement(2846498..2847031) 1 NC_010334.1 PFAM: protein of unknown function DUF1379; KEGG: sbl:Sbal_2438 protein of unknown function DUF1379; hypothetical protein 2847031 5902671 Shal_2355 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674573.1 2846498 R 458817 CDS YP_001674574.1 167624280 5902672 complement(2847205..2848224) 1 NC_010334.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2848224 5902672 Shal_2356 Shewanella halifaxensis HAW-EB4 dihydroorotate dehydrogenase 2 YP_001674574.1 2847205 R 458817 CDS YP_001674575.1 167624281 5903213 complement(2848284..2853128) 1 NC_010334.1 PFAM: NAD-glutamate dehydrogenase; KEGG: slo:Shew_1809 NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase 2853128 5903213 Shal_2357 Shewanella halifaxensis HAW-EB4 NAD-glutamate dehydrogenase YP_001674575.1 2848284 R 458817 CDS YP_001674576.1 167624282 5903337 complement(2853390..2855693) 1 NC_010334.1 KEGG: slo:Shew_1808 hypothetical protein; hypothetical protein 2855693 5903337 Shal_2358 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674576.1 2853390 R 458817 CDS YP_001674577.1 167624283 5903338 complement(2855706..2856722) 1 NC_010334.1 KEGG: shw:Sputw3181_1812 BNR repeat protein; BNR repeat-containing protein 2856722 5903338 Shal_2359 Shewanella halifaxensis HAW-EB4 BNR repeat-containing protein YP_001674577.1 2855706 R 458817 CDS YP_001674578.1 167624284 5903363 complement(2856773..2858137) 1 NC_010334.1 PFAM: protein of unknown function DUF1329; KEGG: slo:Shew_1806 protein of unknown function DUF1329; hypothetical protein 2858137 5903363 Shal_2360 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674578.1 2856773 R 458817 CDS YP_001674579.1 167624285 5903364 complement(2858156..2860204) 1 NC_010334.1 PFAM: protein of unknown function DUF1302; KEGG: slo:Shew_1805 protein of unknown function DUF1302; hypothetical protein 2860204 5903364 Shal_2361 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674579.1 2858156 R 458817 CDS YP_001674580.1 167624286 5904698 complement(2860522..2860719) 1 NC_010334.1 KEGG: slo:Shew_1804 hypothetical protein; hypothetical protein 2860719 5904698 Shal_2362 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674580.1 2860522 R 458817 CDS YP_001674581.1 167624287 5904699 complement(2860844..2863405) 1 NC_010334.1 TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: slo:Shew_1803 aminopeptidase N; aminopeptidase N 2863405 pepN 5904699 pepN Shewanella halifaxensis HAW-EB4 aminopeptidase N YP_001674581.1 2860844 R 458817 CDS YP_001674582.1 167624288 5904747 complement(2863479..2865524) 1 NC_010334.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 2865524 5904747 Shal_2364 Shewanella halifaxensis HAW-EB4 carboxy-terminal protease YP_001674582.1 2863479 R 458817 CDS YP_001674583.1 167624289 5904748 complement(2865558..2866196) 1 NC_010334.1 affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 2866196 5904748 Shal_2365 Shewanella halifaxensis HAW-EB4 putative solute/DNA competence effector YP_001674583.1 2865558 R 458817 CDS YP_001674584.1 167624290 5905202 complement(2866482..2866940) 1 NC_010334.1 PFAM: GAF domain protein; KEGG: saz:Sama_1583 GAF domain-containing protein; putative GAF sensor protein 2866940 5905202 Shal_2366 Shewanella halifaxensis HAW-EB4 putative GAF sensor protein YP_001674584.1 2866482 R 458817 CDS YP_001674585.1 167624291 5905203 complement(2867025..2867315) 1 NC_010334.1 PFAM: YebG family protein; KEGG: slo:Shew_1799 YebG family protein; hypothetical protein 2867315 5905203 Shal_2367 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674585.1 2867025 R 458817 CDS YP_001674586.1 167624292 5905198 2867503..2868132 1 NC_010334.1 PFAM: Paraquat-inducible protein A; KEGG: shm:Shewmr7_1744 paraquat-inducible protein A; paraquat-inducible protein A 2868132 5905198 Shal_2368 Shewanella halifaxensis HAW-EB4 paraquat-inducible protein A YP_001674586.1 2867503 D 458817 CDS YP_001674587.1 167624293 5905199 2868122..2868763 1 NC_010334.1 PFAM: Paraquat-inducible protein A; KEGG: shw:Sputw3181_1802 paraquat-inducible protein A; paraquat-inducible protein A 2868763 5905199 Shal_2369 Shewanella halifaxensis HAW-EB4 paraquat-inducible protein A YP_001674587.1 2868122 D 458817 CDS YP_001674588.1 167624294 5905262 2868741..2871371 1 NC_010334.1 PFAM: Mammalian cell entry related domain protein; KEGG: sbl:Sbal_2453 mammalian cell entry related domain protein; hypothetical protein 2871371 5905262 Shal_2370 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674588.1 2868741 D 458817 CDS YP_001674589.1 167624295 5905263 complement(2871468..2872694) 1 NC_010334.1 PFAM: nucleoside recognition domain protein; KEGG: slo:Shew_1584 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 2872694 5905263 Shal_2371 Shewanella halifaxensis HAW-EB4 nucleoside recognition domain-containing protein YP_001674589.1 2871468 R 458817 CDS YP_001674590.1 167624296 5905331 2872763..2874202 1 NC_010334.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2874202 yebU 5905331 yebU Shewanella halifaxensis HAW-EB4 rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_001674590.1 2872763 D 458817 CDS YP_001674591.1 167624297 5905332 complement(2874503..2875291) 1 NC_010334.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: sfr:Sfri_2237 hydrolase, TatD family protein; TatD family hydrolase 2875291 5905332 Shal_2373 Shewanella halifaxensis HAW-EB4 TatD family hydrolase YP_001674591.1 2874503 R 458817 CDS YP_001674592.1 167624298 5905449 complement(2875337..2875663) 1 NC_010334.1 KEGG: shw:Sputw3181_1797 type IV pilus biogenesis protein PilZ; type IV pilus biogenesis protein PilZ 2875663 5905449 Shal_2374 Shewanella halifaxensis HAW-EB4 type IV pilus biogenesis protein PilZ YP_001674592.1 2875337 R 458817 CDS YP_001674593.1 167624299 5905450 complement(2875673..2876587) 1 NC_010334.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: slo:Shew_1580 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' 2876587 5905450 Shal_2375 Shewanella halifaxensis HAW-EB4 DNA polymerase III subunit delta' YP_001674593.1 2875673 R 458817 CDS YP_001674594.1 167624300 5905447 complement(2876589..2877227) 1 NC_010334.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2877227 tmk 5905447 tmk Shewanella halifaxensis HAW-EB4 thymidylate kinase YP_001674594.1 2876589 R 458817 CDS YP_001674595.1 167624301 5905448 complement(2877224..2878231) 1 NC_010334.1 PFAM: aminodeoxychorismate lyase; KEGG: slo:Shew_1578 aminodeoxychorismate lyase; aminodeoxychorismate lyase 2878231 5905448 Shal_2377 Shewanella halifaxensis HAW-EB4 aminodeoxychorismate lyase YP_001674595.1 2877224 R 458817 CDS YP_001674596.1 167624302 5905383 complement(2878228..2879169) 1 NC_010334.1 PFAM: aminotransferase class IV; KEGG: she:Shewmr4_1659 aminotransferase, class IV; aminodeoxychorismate lyase 2879169 5905383 Shal_2378 Shewanella halifaxensis HAW-EB4 aminodeoxychorismate lyase YP_001674596.1 2878228 R 458817 CDS YP_001674597.1 167624303 5905384 complement(2879242..2879880) 1 NC_010334.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2879880 5905384 Shal_2379 Shewanella halifaxensis HAW-EB4 uridine kinase YP_001674597.1 2879242 R 458817 CDS YP_001674598.1 167624304 5905294 complement(2879892..2881007) 1 NC_010334.1 KEGG: slo:Shew_1574 ATP-binding protein, Mrp/Nbp35 family; ATP-binding Mrp/Nbp35 family protein 2881007 5905294 Shal_2380 Shewanella halifaxensis HAW-EB4 ATP-binding Mrp/Nbp35 family protein YP_001674598.1 2879892 R 458817 CDS YP_001674599.1 167624305 5905295 2881168..2883207 1 NC_010334.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2883207 metG 5905295 metG Shewanella halifaxensis HAW-EB4 methionyl-tRNA synthetase YP_001674599.1 2881168 D 458817 CDS YP_001674600.1 167624306 5905377 complement(2883391..2884143) 1 NC_010334.1 PFAM: protein of unknown function DUF34; KEGG: shw:Sputw3181_1787 protein of unknown function DUF34; hypothetical protein 2884143 5905377 Shal_2382 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674600.1 2883391 R 458817 CDS YP_001674601.1 167624307 5905378 2884391..2884735 1 NC_010334.1 KEGG: slo:Shew_1571 hypothetical protein; hypothetical protein 2884735 5905378 Shal_2383 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674601.1 2884391 D 458817 CDS YP_001674602.1 167624308 5905345 2884960..2885298 1 NC_010334.1 KEGG: mxa:MXAN_0539 hypothetical protein; hypothetical protein 2885298 5905345 Shal_2384 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674602.1 2884960 D 458817 CDS YP_001674603.1 167624309 5905635 2885824..2887056 1 NC_010334.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1831 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 2887056 5905635 Shal_2386 Shewanella halifaxensis HAW-EB4 Bcr/CflA subfamily drug resistance transporter YP_001674603.1 2885824 D 458817 CDS YP_001674604.1 167624310 5905723 2887357..2889078 1 NC_010334.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: slo:Shew_1776 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase large subunit 2889078 5905723 Shal_2387 Shewanella halifaxensis HAW-EB4 acetolactate synthase large subunit YP_001674604.1 2887357 D 458817 CDS YP_001674605.1 167624311 5905724 2889078..2889572 1 NC_010334.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: sbm:Shew185_2375 acetolactate synthase, small subunit; acetolactate synthase small subunit 2889572 5905724 Shal_2388 Shewanella halifaxensis HAW-EB4 acetolactate synthase small subunit YP_001674605.1 2889078 D 458817 CDS YP_001674606.1 167624312 5905778 complement(2889658..2890098) 1 NC_010334.1 PFAM: heat shock protein Hsp20; KEGG: slo:Shew_2134 heat shock protein HSP20; heat shock protein Hsp20 2890098 5905778 Shal_2389 Shewanella halifaxensis HAW-EB4 heat shock protein Hsp20 YP_001674606.1 2889658 R 458817 CDS YP_001674607.1 167624313 5905779 complement(2890467..2892248) 1 NC_010334.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 2892248 ushA 5905779 ushA Shewanella halifaxensis HAW-EB4 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic YP_001674607.1 2890467 R 458817 CDS YP_001674608.1 167624314 5905819 complement(2892622..2893302) 1 NC_010334.1 PFAM: phospholipase/Carboxylesterase; KEGG: sdn:Sden_2138 carboxylesterase; carboxylesterase 2893302 5905819 Shal_2391 Shewanella halifaxensis HAW-EB4 carboxylesterase YP_001674608.1 2892622 R 458817 CDS YP_001674609.1 167624315 5905820 2893537..2894535 1 NC_010334.1 KEGG: slo:Shew_2137 glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein 2894535 5905820 Shal_2392 Shewanella halifaxensis HAW-EB4 glutathione S-transferase domain-containing protein YP_001674609.1 2893537 D 458817 CDS YP_001674610.1 167624316 5905780 complement(2894556..2894774) 1 NC_010334.1 KEGG: slo:Shew_2138 hypothetical protein; hypothetical protein 2894774 5905780 Shal_2393 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674610.1 2894556 R 458817 CDS YP_001674611.1 167624317 5905781 complement(2894866..2895348) 1 NC_010334.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_2139 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 2895348 5905781 Shal_2394 Shewanella halifaxensis HAW-EB4 FKBP-type peptidylprolyl isomerase YP_001674611.1 2894866 R 458817 CDS YP_001674612.1 167624318 5905486 complement(2895527..2896717) 1 NC_010334.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: she:Shewmr4_2269 lytic murein transglycosylase; lytic murein transglycosylase 2896717 5905486 Shal_2395 Shewanella halifaxensis HAW-EB4 lytic murein transglycosylase YP_001674612.1 2895527 R 458817 CDS YP_001674613.1 167624319 5905487 2897086..2897445 1 NC_010334.1 KEGG: sdn:Sden_2142 hypothetical protein; hypothetical protein 2897445 5905487 Shal_2396 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674613.1 2897086 D 458817 CDS YP_001674614.1 167624320 5905891 2897526..2898188 1 NC_010334.1 KEGG: sbl:Sbal_2593 hypothetical protein; hypothetical protein 2898188 5905891 Shal_2397 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674614.1 2897526 D 458817 CDS YP_001674615.1 167624321 5905892 complement(2898218..2899162) 1 NC_010334.1 PFAM: response regulator receiver; CheW domain protein; KEGG: shn:Shewana3_2462 response regulator receiver modulated CheW protein; response regulator receiver modulated CheW protein 2899162 5905892 Shal_2398 Shewanella halifaxensis HAW-EB4 response regulator receiver modulated CheW protein YP_001674615.1 2898218 R 458817 CDS YP_001674616.1 167624322 5905502 complement(2899303..2900904) 1 NC_010334.1 PFAM: MscS Mechanosensitive ion channel; KEGG: slo:Shew_2145 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 2900904 5905502 Shal_2399 Shewanella halifaxensis HAW-EB4 mechanosensitive ion channel protein MscS YP_001674616.1 2899303 R 458817 CDS YP_001674617.1 167624323 5905503 2901420..2901593 1 NC_010334.1 KEGG: shm:Shewmr7_2349 hypothetical protein; hypothetical protein 2901593 5905503 Shal_2400 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674617.1 2901420 D 458817 CDS YP_001674618.1 167624324 5906912 complement(2901865..2902800) 1 NC_010334.1 KEGG: shw:Sputw3181_1679 hypothetical protein; hypothetical protein 2902800 5906912 Shal_2401 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674618.1 2901865 R 458817 CDS YP_001674619.1 167624325 5906913 2903112..2903519 1 NC_010334.1 PFAM: protein of unknown function DUF307; KEGG: shw:Sputw3181_1678 protein of unknown function DUF307; hypothetical protein 2903519 5906913 Shal_2402 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674619.1 2903112 D 458817 CDS YP_001674620.1 167624326 5906287 complement(2903516..2904313) 1 NC_010334.1 PFAM: alpha/beta hydrolase fold; KEGG: shn:Shewana3_2471 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein 2904313 5906287 Shal_2403 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase fold protein YP_001674620.1 2903516 R 458817 CDS YP_001674621.1 167624327 5906288 complement(2904361..2905155) 1 NC_010334.1 KEGG: sbm:Shew185_2644 conserved hypothetical ABC transporter protein; ABC transporter 2905155 5906288 Shal_2404 Shewanella halifaxensis HAW-EB4 ABC transporter YP_001674621.1 2904361 R 458817 CDS YP_001674622.1 167624328 5906765 2905432..2905656 1 NC_010334.1 KEGG: slo:Shew_2150 integral membrane protein TerC; integral membrane protein TerC 2905656 5906765 Shal_2405 Shewanella halifaxensis HAW-EB4 integral membrane protein TerC YP_001674622.1 2905432 D 458817 CDS YP_001674623.1 167624329 5906766 2905919..2906911 1 NC_010334.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: shw:Sputw3181_1721 cytochrome-c peroxidase; cytochrome-c peroxidase 2906911 5906766 Shal_2406 Shewanella halifaxensis HAW-EB4 cytochrome-c peroxidase YP_001674623.1 2905919 D 458817 CDS YP_001674624.1 167624330 5906459 complement(2907025..2907384) 1 NC_010334.1 KEGG: slo:Shew_2151 hypothetical protein; hypothetical protein 2907384 5906459 Shal_2407 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674624.1 2907025 R 458817 CDS YP_001674625.1 167624331 5906460 complement(2907800..2908714) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_2480 transcriptional regulator, LysR family; LysR family transcriptional regulator 2908714 5906460 Shal_2408 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001674625.1 2907800 R 458817 CDS YP_001674626.1 167624332 5906432 2908870..2910030 1 NC_010334.1 PFAM: homogentisate 12-dioxygenase; KEGG: sfr:Sfri_2326 homogentisate 1,2-dioxygenase; homogentisate 12-dioxygenase 2910030 5906432 Shal_2409 Shewanella halifaxensis HAW-EB4 homogentisate 12-dioxygenase YP_001674626.1 2908870 D 458817 CDS YP_001674627.1 167624333 5906433 2910135..2911175 1 NC_010334.1 KEGG: slo:Shew_2155 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2911175 5906433 Shal_2410 Shewanella halifaxensis HAW-EB4 4-hydroxyphenylpyruvate dioxygenase YP_001674627.1 2910135 D 458817 CDS YP_001674628.1 167624334 5905911 complement(2911502..2912449) 1 NC_010334.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: cps:CPS_0452 sensory box/GGDEF domain protein; PAS/PAC sensor-containing diguanylate cyclase 2912449 5905911 Shal_2411 Shewanella halifaxensis HAW-EB4 PAS/PAC sensor-containing diguanylate cyclase YP_001674628.1 2911502 R 458817 CDS YP_001674629.1 167624335 5906321 complement(2912539..2912676) 1 NC_010334.1 KEGG: son:SO_3447 hypothetical protein; hypothetical protein 2912676 5906321 Shal_2412 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674629.1 2912539 R 458817 CDS YP_001674630.1 167624336 5906322 2912912..2913022 1 NC_010334.1 KEGG: sdn:Sden_1136 transposase; transposase 2913022 5906322 Shal_2413 Shewanella halifaxensis HAW-EB4 transposase YP_001674630.1 2912912 D 458817 CDS YP_001674631.1 167624337 5906317 complement(2913231..2914211) 1 NC_010334.1 PFAM: protein of unknown function DUF1568; KEGG: pin:Ping_3091 hypothetical protein DUF1568; hypothetical protein 2914211 5906317 Shal_2414 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674631.1 2913231 R 458817 CDS YP_001674632.1 167624338 5906318 2914272..2914793 1 NC_010334.1 KEGG: slo:Shew_2155 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2914793 5906318 Shal_2415 Shewanella halifaxensis HAW-EB4 4-hydroxyphenylpyruvate dioxygenase YP_001674632.1 2914272 D 458817 CDS YP_001674633.1 167624339 5905953 2915884..2916417 1 NC_010334.1 PFAM: protein of unknown function DUF442; KEGG: shw:Sputw3181_4004 hypothetical protein; hypothetical protein 2916417 5905953 Shal_2416 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674633.1 2915884 D 458817 CDS YP_001674634.1 167624340 5905954 2917801..2918421 1 NC_010334.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO_1954 transporter, LysE family; lysine exporter protein LysE/YggA 2918421 5905954 Shal_2417 Shewanella halifaxensis HAW-EB4 lysine exporter protein LysE/YggA YP_001674634.1 2917801 D 458817 CDS YP_001674635.1 167624341 5907034 2918477..2918854 1 NC_010334.1 KEGG: saz:Sama_2872 hypothetical protein; hypothetical protein 2918854 5907034 Shal_2418 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674635.1 2918477 D 458817 CDS YP_001674636.1 167624342 5907035 2919092..2919421 1 NC_010334.1 hypothetical protein 2919421 5907035 Shal_2419 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674636.1 2919092 D 458817 CDS YP_001674637.1 167624343 5906908 2919753..2921540 1 NC_010334.1 KEGG: sbm:Shew185_2658 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2921540 5906908 Shal_2420 Shewanella halifaxensis HAW-EB4 gamma-glutamyltransferase YP_001674637.1 2919753 D 458817 CDS YP_001674638.1 167624344 5906909 2921903..2922871 1 NC_010334.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 2922871 rihA 5906909 rihA Shewanella halifaxensis HAW-EB4 ribonucleoside hydrolase 1 YP_001674638.1 2921903 D 458817 CDS YP_001674639.1 167624345 5906787 complement(2923193..2924374) 1 NC_010334.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: oan:Oant_3490 major facilitator superfamily MFS_1; major facilitator transporter 2924374 5906787 Shal_2422 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001674639.1 2923193 R 458817 CDS YP_001674640.1 167624346 5906788 complement(2924773..2924994) 1 NC_010334.1 KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein 2924994 5906788 Shal_2423 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674640.1 2924773 R 458817 CDS YP_001674641.1 167624347 5906703 2926189..2927214 1 NC_010334.1 KEGG: ppr:PBPRB0021 putative simple sugar transport system substrate-binding protein; putative simple sugar transport system substrate-binding protein 2927214 5906703 Shal_2424 Shewanella halifaxensis HAW-EB4 putative simple sugar transport system substrate-binding protein YP_001674641.1 2926189 D 458817 CDS YP_001674642.1 167624348 5906704 2927214..2927981 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB0020 hypothetical ABC-type sugar transport system, ATPase component; ABC transporter-like protein 2927981 5906704 Shal_2425 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001674642.1 2927214 D 458817 CDS YP_001674643.1 167624349 5906694 2927978..2928967 1 NC_010334.1 PFAM: inner-membrane translocator; KEGG: ppr:PBPRB0019 putative AraH,Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; monosaccharide-transporting ATPase 2928967 5906694 Shal_2426 Shewanella halifaxensis HAW-EB4 monosaccharide-transporting ATPase YP_001674643.1 2927978 D 458817 CDS YP_001674644.1 167624350 5906695 2929117..2930478 1 NC_010334.1 PFAM: glycoside hydrolase family 4; KEGG: ppr:PBPRB0018 putative alpha-galactosidase (melibiase); glycoside hydrolase family protein 2930478 5906695 Shal_2427 Shewanella halifaxensis HAW-EB4 glycoside hydrolase family protein YP_001674644.1 2929117 D 458817 CDS YP_001674645.1 167624351 5906686 complement(2930653..2932227) 1 NC_010334.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: slo:Shew_2159 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer 2932227 5906686 Shal_2428 Shewanella halifaxensis HAW-EB4 Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer YP_001674645.1 2930653 R 458817 CDS YP_001674646.1 167624352 5906687 complement(2932445..2933959) 1 NC_010334.1 KEGG: shm:Shewmr7_2371 dipeptidase, putative; TIGRFAM: dipeptidase, putative; PFAM: peptidase M20; hypothetical protein 2933959 5906687 Shal_2429 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674646.1 2932445 R 458817 CDS YP_001674647.1 167624353 5906678 2934170..2936359 1 NC_010334.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: slo:Shew_2161 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp 2936359 5906678 Shal_2430 Shewanella halifaxensis HAW-EB4 peptidyl-dipeptidase Dcp YP_001674647.1 2934170 D 458817 CDS YP_001674648.1 167624354 5906679 complement(2936796..2937074) 1 NC_010334.1 KEGG: shn:Shewana3_2752 hypothetical protein; hypothetical protein 2937074 5906679 Shal_2431 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674648.1 2936796 R 458817 CDS YP_001674649.1 167624355 5906582 2937373..2937984 1 NC_010334.1 PFAM: protein of unknown function DUF938; KEGG: shn:Shewana3_1834 protein of unknown function DUF938; hypothetical protein 2937984 5906582 Shal_2432 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674649.1 2937373 D 458817 CDS YP_001674650.1 167624356 5906583 complement(2937981..2938667) 1 NC_010334.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 2938667 5906583 Shal_2433 Shewanella halifaxensis HAW-EB4 nucleotidase YP_001674650.1 2937981 R 458817 CDS YP_001674651.1 167624357 5906403 complement(2938866..2940656) 1 NC_010334.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sfr:Sfri_2744 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2940656 5906403 Shal_2434 Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase domain-containing protein YP_001674651.1 2938866 R 458817 CDS YP_001674652.1 167624358 5906404 2940876..2941721 1 NC_010334.1 PFAM: Aldose 1-epimerase; KEGG: sbm:Shew185_1722 aldose 1-epimerase; aldose 1-epimerase 2941721 5906404 Shal_2435 Shewanella halifaxensis HAW-EB4 aldose 1-epimerase YP_001674652.1 2940876 D 458817 CDS YP_001674653.1 167624359 5906391 complement(2941888..2942127) 1 NC_010334.1 hypothetical protein 2942127 5906391 Shal_2436 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674653.1 2941888 R 458817 CDS YP_001674654.1 167624360 5906392 2942766..2945975 1 NC_010334.1 KEGG: shm:Shewmr7_2186 hypothetical protein; hypothetical protein 2945975 5906392 Shal_2437 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674654.1 2942766 D 458817 CDS YP_001674655.1 167624361 5906363 2946078..2946278 1 NC_010334.1 KEGG: shn:Shewana3_1844 hypothetical protein; hypothetical protein 2946278 5906363 Shal_2438 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674655.1 2946078 D 458817 CDS YP_001674656.1 167624362 5906276 2946303..2946623 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: slo:Shew_2168 uncharacterized conserved protein UCP025560; hypothetical protein 2946623 5906276 Shal_2439 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674656.1 2946303 D 458817 CDS YP_001674657.1 167624363 5906277 2946757..2947164 1 NC_010334.1 KEGG: vha:VIBHAR_02135 hypothetical protein; hypothetical protein 2947164 5906277 Shal_2440 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674657.1 2946757 D 458817 CDS YP_001674658.1 167624364 5906208 2947362..2947637 1 NC_010334.1 hypothetical protein 2947637 5906208 Shal_2441 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674658.1 2947362 D 458817 CDS YP_001674659.1 167624365 5906209 complement(2947653..2948177) 1 NC_010334.1 KEGG: sbm:Shew185_1810 hypothetical protein; hypothetical protein 2948177 5906209 Shal_2442 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674659.1 2947653 R 458817 CDS YP_001674660.1 167624366 5905435 complement(2948167..2949324) 1 NC_010334.1 KEGG: sbm:Shew185_1809 hypothetical protein; hypothetical protein 2949324 5905435 Shal_2443 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674660.1 2948167 R 458817 CDS YP_001674661.1 167624367 5905436 complement(2949314..2950453) 1 NC_010334.1 KEGG: sbl:Sbal_1816 hypothetical protein; hypothetical protein 2950453 5905436 Shal_2444 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674661.1 2949314 R 458817 CDS YP_001674662.1 167624368 5905221 complement(2950497..2951648) 1 NC_010334.1 PFAM: protein of unknown function UPF0118; KEGG: ppr:PBPRA1562 hypothetical protein; hypothetical protein 2951648 5905221 Shal_2445 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674662.1 2950497 R 458817 CDS YP_001674663.1 167624369 5905222 complement(2951650..2952327) 1 NC_010334.1 PFAM: Ion transport 2 domain protein; KEGG: vpa:VPA1582 hypothetical protein; Ion transport 2 domain-containing protein 2952327 5905222 Shal_2446 Shewanella halifaxensis HAW-EB4 Ion transport 2 domain-containing protein YP_001674663.1 2951650 R 458817 CDS YP_001674664.1 167624370 5905151 complement(2952598..2953911) 1 NC_010334.1 PFAM: protein of unknown function DUF214; KEGG: saz:Sama_1472 ABC transporter permease protein; hypothetical protein 2953911 5905151 Shal_2447 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674664.1 2952598 R 458817 CDS YP_001674665.1 167624371 5905152 complement(2953908..2955185) 1 NC_010334.1 KEGG: saz:Sama_1471 membrane-fusion protein; membrane-fusion protein 2955185 5905152 Shal_2448 Shewanella halifaxensis HAW-EB4 membrane-fusion protein YP_001674665.1 2953908 R 458817 CDS YP_001674666.1 167624372 5905215 complement(2955182..2956348) 1 NC_010334.1 KEGG: saz:Sama_1470 membrane-fusion protein; membrane-fusion protein 2956348 5905215 Shal_2449 Shewanella halifaxensis HAW-EB4 membrane-fusion protein YP_001674666.1 2955182 R 458817 CDS YP_001674667.1 167624373 5905216 complement(2956345..2957478) 1 NC_010334.1 KEGG: saz:Sama_1469 multidrug resistance efflux pump-like protein; multidrug resistance efflux pump-like protein 2957478 5905216 Shal_2450 Shewanella halifaxensis HAW-EB4 multidrug resistance efflux pump-like protein YP_001674667.1 2956345 R 458817 CDS YP_001674668.1 167624374 5905039 complement(2957468..2958154) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: saz:Sama_1468 putative macrolide efflux ABC transporter, ATP-binding protein; ABC transporter-like protein 2958154 5905039 Shal_2451 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001674668.1 2957468 R 458817 CDS YP_001674669.1 167624375 5905040 complement(2958644..2959033) 1 NC_010334.1 KEGG: slo:Shew_1747 hypothetical protein; hypothetical protein 2959033 5905040 Shal_2452 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674669.1 2958644 R 458817 CDS YP_001674670.1 167624376 5904819 complement(2959213..2959617) 1 NC_010334.1 KEGG: shw:Sputw3181_2406 hypothetical protein; hypothetical protein 2959617 5904819 Shal_2453 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674670.1 2959213 R 458817 CDS YP_001674671.1 167624377 5904820 complement(2959948..2960547) 1 NC_010334.1 KEGG: slo:Shew_1744 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2960547 5904820 Shal_2454 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001674671.1 2959948 R 458817 CDS YP_001674672.1 167624378 5904671 complement(2960671..2961276) 1 NC_010334.1 PFAM: nitroreductase; KEGG: sfr:Sfri_1532 nitroreductase; nitroreductase 2961276 5904671 Shal_2455 Shewanella halifaxensis HAW-EB4 nitroreductase YP_001674672.1 2960671 R 458817 CDS YP_001674673.1 167624379 5904672 complement(2961456..2962052) 1 NC_010334.1 PFAM: DoxX family protein; KEGG: sfr:Sfri_1531 DoxX family protein; DoxX family protein 2962052 5904672 Shal_2456 Shewanella halifaxensis HAW-EB4 DoxX family protein YP_001674673.1 2961456 R 458817 CDS YP_001674674.1 167624380 5904678 complement(2962151..2962993) 1 NC_010334.1 KEGG: sdn:Sden_2317 hypothetical protein; hypothetical protein 2962993 5904678 Shal_2457 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674674.1 2962151 R 458817 CDS YP_001674675.1 167624381 5904679 complement(2963657..2964814) 1 NC_010334.1 PFAM: aminoglycoside phosphotransferase; KEGG: slo:Shew_1738 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2964814 5904679 Shal_2458 Shewanella halifaxensis HAW-EB4 aminoglycoside phosphotransferase YP_001674675.1 2963657 R 458817 CDS YP_001674676.1 167624382 5903184 complement(2964815..2965477) 1 NC_010334.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: sbl:Sbal_1804 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 2965477 5903184 Shal_2459 Shewanella halifaxensis HAW-EB4 nicotinamide mononucleotide transporter PnuC YP_001674676.1 2964815 R 458817 CDS YP_001674677.1 167624383 5903185 complement(2965622..2965882) 1 NC_010334.1 KEGG: sfr:Sfri_1527 hypothetical protein; hypothetical protein 2965882 5903185 Shal_2460 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674677.1 2965622 R 458817 CDS YP_001674678.1 167624384 5905924 complement(2966004..2968142) 1 NC_010334.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_1735 TonB-dependent receptor; TonB-dependent receptor 2968142 5905924 Shal_2461 Shewanella halifaxensis HAW-EB4 TonB-dependent receptor YP_001674678.1 2966004 R 458817 CDS YP_001674679.1 167624385 5905925 complement(2968452..2968841) 1 NC_010334.1 PFAM: protein of unknown function DUF1425; KEGG: slo:Shew_1734 protein of unknown function DUF1425; hypothetical protein 2968841 5905925 Shal_2462 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674679.1 2968452 R 458817 CDS YP_001674680.1 167624386 5906005 complement(2968910..2969395) 1 NC_010334.1 PFAM: thioesterase superfamily protein; KEGG: son:SO_2721 hypothetical protein; thioesterase superfamily protein 2969395 5906005 Shal_2463 Shewanella halifaxensis HAW-EB4 thioesterase superfamily protein YP_001674680.1 2968910 R 458817 CDS YP_001674681.1 167624387 5904795 complement(2969388..2969891) 1 NC_010334.1 PFAM: thioesterase superfamily protein; KEGG: sbm:Shew185_1791 thioesterase superfamily protein; thioesterase superfamily protein 2969891 5904795 Shal_2464 Shewanella halifaxensis HAW-EB4 thioesterase superfamily protein YP_001674681.1 2969388 R 458817 CDS YP_001674682.1 167624388 5904796 complement(2969888..2970244) 1 NC_010334.1 PFAM: histidine triad (HIT) protein; KEGG: slo:Shew_1731 histidine triad (HIT) protein; histidine triad (HIT) protein 2970244 5904796 Shal_2465 Shewanella halifaxensis HAW-EB4 histidine triad (HIT) protein YP_001674682.1 2969888 R 458817 CDS YP_001674683.1 167624389 5905253 2970441..2970854 1 NC_010334.1 PFAM: regulatory protein TetR; KEGG: tfu:Tfu_2816 hypothetical protein; TetR family transcriptional regulator 2970854 5905253 Shal_2466 Shewanella halifaxensis HAW-EB4 TetR family transcriptional regulator YP_001674683.1 2970441 D 458817 CDS YP_001674684.1 167624390 5905454 complement(2971068..2971514) 1 NC_010334.1 hypothetical protein 2971514 5905454 Shal_2467 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674684.1 2971068 R 458817 CDS YP_001674685.1 167624391 5905455 complement(2971516..2971917) 1 NC_010334.1 hypothetical protein 2971917 5905455 Shal_2468 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674685.1 2971516 R 458817 CDS YP_001674686.1 167624392 5904311 complement(2972031..2972666) 1 NC_010334.1 PFAM: regulatory protein LuxR; KEGG: saz:Sama_1446 response regulator receiver protein; LuxR family transcriptional regulator 2972666 5904311 Shal_2469 Shewanella halifaxensis HAW-EB4 LuxR family transcriptional regulator YP_001674686.1 2972031 R 458817 CDS YP_001674687.1 167624393 5904312 complement(2972956..2973279) 1 NC_010334.1 KEGG: sbl:Sbal_1794 tetratricopeptide TPR_2 repeat protein; hypothetical protein 2973279 5904312 Shal_2470 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674687.1 2972956 R 458817 CDS YP_001674688.1 167624394 5906043 complement(2973716..2974090) 1 NC_010334.1 KEGG: slo:Shew_1724 cytochrome c3; cytochrome c3 2974090 5906043 Shal_2472 Shewanella halifaxensis HAW-EB4 cytochrome c3 YP_001674688.1 2973716 R 458817 CDS YP_001674689.1 167624395 5905836 complement(2974352..2975215) 1 NC_010334.1 putative metalloprotease; heat shock protein HtpX 2975215 5905836 Shal_2473 Shewanella halifaxensis HAW-EB4 heat shock protein HtpX YP_001674689.1 2974352 R 458817 CDS YP_001674690.1 167624396 5905837 complement(2975564..2976229) 1 NC_010334.1 KEGG: sbm:Shew185_1754 dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; PFAM: Cobyrinic acid ac-diamide synthase; dethiobiotin synthase 2976229 5905837 Shal_2474 Shewanella halifaxensis HAW-EB4 dethiobiotin synthase YP_001674690.1 2975564 R 458817 CDS YP_001674691.1 167624397 5906523 complement(2976248..2977018) 1 NC_010334.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_2357 biotin biosynthesis protein BioC; type 11 methyltransferase 2977018 5906523 Shal_2475 Shewanella halifaxensis HAW-EB4 type 11 methyltransferase YP_001674691.1 2976248 R 458817 CDS YP_001674692.1 167624398 5906524 complement(2977034..2978227) 1 NC_010334.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; KEGG: sbm:Shew185_1752 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 2978227 5906524 Shal_2476 Shewanella halifaxensis HAW-EB4 8-amino-7-oxononanoate synthase YP_001674692.1 2977034 R 458817 CDS YP_001674693.1 167624399 5905856 complement(2978318..2979370) 1 NC_010334.1 KEGG: shn:Shewana3_2519 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 2979370 5905856 Shal_2477 Shewanella halifaxensis HAW-EB4 biotin synthase YP_001674693.1 2978318 R 458817 CDS YP_001674694.1 167624400 5905857 2979618..2980958 1 NC_010334.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: sdn:Sden_1657 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2980958 5905857 Shal_2478 Shewanella halifaxensis HAW-EB4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_001674694.1 2979618 D 458817 CDS YP_001674695.1 167624401 5905821 2981224..2983320 1 NC_010334.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2983320 5905821 Shal_2479 Shewanella halifaxensis HAW-EB4 elongation factor G YP_001674695.1 2981224 D 458817 CDS YP_001674696.1 167624402 5905822 complement(2983423..2983887) 1 NC_010334.1 KEGG: shn:Shewana3_1718 hypothetical protein; hypothetical protein 2983887 5905822 Shal_2480 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674696.1 2983423 R 458817 CDS YP_001674697.1 167624403 5904013 complement(2983949..2984674) 1 NC_010334.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2984674 5904013 Shal_2481 Shewanella halifaxensis HAW-EB4 NAD-dependent deacetylase YP_001674697.1 2983949 R 458817 CDS YP_001674698.1 167624404 5904014 2984942..2985373 1 NC_010334.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 2985373 fur 5904014 fur Shewanella halifaxensis HAW-EB4 ferric uptake regulator YP_001674698.1 2984942 D 458817 CDS YP_001674699.1 167624405 5904212 complement(2985431..2985931) 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_1660 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2985931 5904212 Shal_2483 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001674699.1 2985431 R 458817 CDS YP_001674700.1 167624406 5904213 2986082..2987734 1 NC_010334.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: slo:Shew_1659 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 2987734 5904213 Shal_2484 Shewanella halifaxensis HAW-EB4 ferredoxin-dependent glutamate synthase YP_001674700.1 2986082 D 458817 CDS YP_001674701.1 167624407 5904073 complement(2987869..2988177) 1 NC_010334.1 KEGG: ppr:PBPRA2342 hypothetical protein; hypothetical protein 2988177 5904073 Shal_2485 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674701.1 2987869 R 458817 CDS YP_001674702.1 167624408 5904074 complement(2988416..2989288) 1 NC_010334.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: saz:Sama_1430 succinyl-CoA synthetase alpha chain; succinyl-CoA synthetase subunit alpha 2989288 5904074 Shal_2486 Shewanella halifaxensis HAW-EB4 succinyl-CoA synthetase subunit alpha YP_001674702.1 2988416 R 458817 CDS YP_001674703.1 167624409 5903658 complement(2989288..2990454) 1 NC_010334.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2990454 sucC 5903658 sucC Shewanella halifaxensis HAW-EB4 succinyl-CoA synthetase subunit beta YP_001674703.1 2989288 R 458817 CDS YP_001674704.1 167624410 5903659 complement(2990533..2991729) 1 NC_010334.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: slo:Shew_1656 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 2991729 5903659 Shal_2488 Shewanella halifaxensis HAW-EB4 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase YP_001674704.1 2990533 R 458817 CDS YP_001674705.1 167624411 5905571 complement(2991762..2994584) 1 NC_010334.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2994584 sucA 5905571 sucA Shewanella halifaxensis HAW-EB4 2-oxoglutarate dehydrogenase E1 component YP_001674705.1 2991762 R 458817 CDS YP_001674706.1 167624412 5905572 complement(2994789..2995496) 1 NC_010334.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 2995496 sdhB 5905572 sdhB Shewanella halifaxensis HAW-EB4 succinate dehydrogenase iron-sulfur subunit YP_001674706.1 2994789 R 458817 CDS YP_001674707.1 167624413 5904210 complement(2995509..2997275) 1 NC_010334.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 2997275 sdhA 5904210 sdhA Shewanella halifaxensis HAW-EB4 succinate dehydrogenase flavoprotein subunit YP_001674707.1 2995509 R 458817 CDS YP_001674708.1 167624414 5904211 complement(2997276..2997623) 1 NC_010334.1 TIGRFAM: Succinate dehydrogenase hydrophobic membrane anchor; KEGG: shw:Sputw3181_1736 conserved hypothetical succinate dehydrogenase, hydrophobic subunit; succinate dehydrogenase hydrophobic membrane anchor 2997623 5904211 Shal_2492 Shewanella halifaxensis HAW-EB4 succinate dehydrogenase hydrophobic membrane anchor YP_001674708.1 2997276 R 458817 CDS YP_001674709.1 167624415 5903867 complement(2997617..2997991) 1 NC_010334.1 TIGRFAM: Succinate dehydrogenase cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: slo:Shew_1651 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase cytochrome b556 subunit 2997991 5903867 Shal_2493 Shewanella halifaxensis HAW-EB4 succinate dehydrogenase cytochrome b556 subunit YP_001674709.1 2997617 R 458817 CDS YP_001674710.1 167624416 5903700 2998423..2999712 1 NC_010334.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 2999712 gltA 5903700 gltA Shewanella halifaxensis HAW-EB4 type II citrate synthase YP_001674710.1 2998423 D 458817 CDS YP_001674711.1 167624417 5903701 3000057..3001118 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_1649 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3001118 5903701 Shal_2495 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001674711.1 3000057 D 458817 CDS YP_001674712.1 167624418 5904524 3001233..3004526 1 NC_010334.1 PFAM: acriflavin resistance protein; KEGG: slo:Shew_1648 acriflavin resistance protein; acriflavin resistance protein 3004526 5904524 Shal_2496 Shewanella halifaxensis HAW-EB4 acriflavin resistance protein YP_001674712.1 3001233 D 458817 CDS YP_001674713.1 167624419 5904525 3004523..3007600 1 NC_010334.1 PFAM: acriflavin resistance protein; KEGG: slo:Shew_1647 acriflavin resistance protein; acriflavin resistance protein 3007600 5904525 Shal_2497 Shewanella halifaxensis HAW-EB4 acriflavin resistance protein YP_001674713.1 3004523 D 458817 CDS YP_001674714.1 167624420 5904332 3007777..3009222 1 NC_010334.1 KEGG: slo:Shew_0958 hypothetical protein; hypothetical protein 3009222 5904332 Shal_2498 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674714.1 3007777 D 458817 CDS YP_001674715.1 167624421 5904333 3009439..3011754 1 NC_010334.1 KEGG: vpa:VP1135 hypothetical protein; hypothetical protein 3011754 5904333 Shal_2499 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674715.1 3009439 D 458817 CDS YP_001674716.1 167624422 5904817 3011994..3013364 1 NC_010334.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: slo:Shew_1645 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 3013364 5904817 Shal_2500 Shewanella halifaxensis HAW-EB4 sigma-54 dependent trancsriptional regulator YP_001674716.1 3011994 D 458817 CDS YP_001674717.1 167624423 5904818 3013408..3014208 1 NC_010334.1 PFAM: DSBA oxidoreductase; KEGG: slo:Shew_1644 DsbA oxidoreductase; DSBA oxidoreductase 3014208 5904818 Shal_2501 Shewanella halifaxensis HAW-EB4 DSBA oxidoreductase YP_001674717.1 3013408 D 458817 CDS YP_001674718.1 167624424 5904457 3014934..3017285 1 NC_010334.1 KEGG: slo:Shew_1643 hypothetical protein; hypothetical protein 3017285 5904457 Shal_2502 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674718.1 3014934 D 458817 CDS YP_001674719.1 167624425 5904458 complement(3017487..3020522) 1 NC_010334.1 PFAM: Peptidase M11 gametolysin; KEGG: slo:Shew_1642 peptidase M11, gametolysin; peptidase M11 gametolysin 3020522 5904458 Shal_2503 Shewanella halifaxensis HAW-EB4 peptidase M11 gametolysin YP_001674719.1 3017487 R 458817 CDS YP_001674720.1 167624426 5904455 complement(3021047..3021220) 1 NC_010334.1 PFAM: protein of unknown function DUF343; KEGG: son:SO_2800 hypothetical protein; hypothetical protein 3021220 5904455 Shal_2504 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674720.1 3021047 R 458817 CDS YP_001674721.1 167624427 5904456 complement(3021232..3022224) 1 NC_010334.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 3022224 lpxK 5904456 lpxK Shewanella halifaxensis HAW-EB4 tetraacyldisaccharide 4'-kinase YP_001674721.1 3021232 R 458817 CDS YP_001674722.1 167624428 5904250 complement(3022225..3024048) 1 NC_010334.1 KEGG: son:SO_2802 ABC transporter, ATP-binding protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter ATPase/inner membrane subunits MsbA 3024048 5904250 Shal_2506 Shewanella halifaxensis HAW-EB4 lipid A ABC exporter ATPase/inner membrane subunits MsbA YP_001674722.1 3022225 R 458817 CDS YP_001674723.1 167624429 5904251 complement(3024081..3026432) 1 NC_010334.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: shw:Sputw3181_2543 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-like competence protein ComEC/Rec2 3026432 5904251 Shal_2507 Shewanella halifaxensis HAW-EB4 DNA internalization-like competence protein ComEC/Rec2 YP_001674723.1 3024081 R 458817 CDS YP_001674724.1 167624430 5905389 3026464..3026970 1 NC_010334.1 KEGG: slo:Shew_1636 hypothetical protein; hypothetical protein 3026970 5905389 Shal_2508 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674724.1 3026464 D 458817 CDS YP_001674725.1 167624431 5905390 complement(3027043..3027840) 1 NC_010334.1 PFAM: peptidase M23B; KEGG: slo:Shew_1474 peptidase M23B; peptidase M23B 3027840 5905390 Shal_2509 Shewanella halifaxensis HAW-EB4 peptidase M23B YP_001674725.1 3027043 R 458817 CDS YP_001674726.1 167624432 5905597 complement(3027907..3028797) 1 NC_010334.1 KEGG: slo:Shew_1473 hypothetical protein; hypothetical protein 3028797 5905597 Shal_2510 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674726.1 3027907 R 458817 CDS YP_001674727.1 167624433 5905598 complement(3029009..3030037) 1 NC_010334.1 PFAM: 37kDa nucleoid-associated protein; KEGG: slo:Shew_1472 37 kDa nucleoid-associated protein; nucleoid-associated protein NdpA 3030037 5905598 Shal_2511 Shewanella halifaxensis HAW-EB4 nucleoid-associated protein NdpA YP_001674727.1 3029009 R 458817 CDS YP_001674728.1 167624434 5905209 3030519..3030737 1 NC_010334.1 PFAM: protein of unknown function DUF1414; KEGG: son:SO_2176 hypothetical protein; hypothetical protein 3030737 5905209 Shal_2512 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674728.1 3030519 D 458817 CDS YP_001674729.1 167624435 5905210 3030816..3032600 1 NC_010334.1 PFAM: sulfatase; KEGG: shn:Shewana3_2428 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; sulfatase 3032600 5905210 Shal_2513 Shewanella halifaxensis HAW-EB4 sulfatase YP_001674729.1 3030816 D 458817 CDS YP_001674730.1 167624436 5907019 complement(3032928..3033152) 1 NC_010334.1 KEGG: slo:Shew_2961 hypothetical protein; hypothetical protein 3033152 5907019 Shal_2514 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674730.1 3032928 R 458817 CDS YP_001674731.1 167624437 5905223 3033553..3035751 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_1467 diguanylate cyclase; diguanylate cyclase 3035751 5905223 Shal_2515 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001674731.1 3033553 D 458817 CDS YP_001674732.1 167624438 5906406 complement(3035835..3037274) 1 NC_010334.1 KEGG: sbl:Sbal_2541 hypothetical protein; hypothetical protein 3037274 5906406 Shal_2516 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674732.1 3035835 R 458817 CDS YP_001674733.1 167624439 5906407 complement(3037532..3038362) 1 NC_010334.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 3038362 nadE 5906407 nadE Shewanella halifaxensis HAW-EB4 NAD synthetase YP_001674733.1 3037532 R 458817 CDS YP_001674734.1 167624440 5905359 3038532..3039176 1 NC_010334.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: slo:Shew_1462 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3039176 5905359 Shal_2518 Shewanella halifaxensis HAW-EB4 lysine exporter protein LysE/YggA YP_001674734.1 3038532 D 458817 CDS YP_001674735.1 167624441 5904515 complement(3039240..3040592) 1 NC_010334.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: slo:Shew_2341 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma54 specific transcriptional regulator 3040592 5904515 Shal_2519 Shewanella halifaxensis HAW-EB4 Fis family two component sigma54 specific transcriptional regulator YP_001674735.1 3039240 R 458817 CDS YP_001674736.1 167624442 5904516 complement(3040589..3042355) 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_2342 integral membrane sensor signal transduction histidine kinase; histidine kinase 3042355 5904516 Shal_2520 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001674736.1 3040589 R 458817 CDS YP_001674737.1 167624443 5904723 3042726..3043472 1 NC_010334.1 KEGG: slo:Shew_2343 hypothetical protein; hypothetical protein 3043472 5904723 Shal_2521 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674737.1 3042726 D 458817 CDS YP_001674738.1 167624444 5904724 3043772..3045856 1 NC_010334.1 PFAM: EAL domain protein; phosphotransferase system EIIC; KEGG: vvy:VVA1275 hypothetical protein; diguanylate phosphodiesterase 3045856 5904724 Shal_2522 Shewanella halifaxensis HAW-EB4 diguanylate phosphodiesterase YP_001674738.1 3043772 D 458817 CDS YP_001674739.1 167624445 5904578 complement(3047155..3051246) 1 NC_010334.1 PFAM: Proprotein convertase P; KEGG: slo:Shew_1752 proprotein convertase, P; proprotein convertase P 3051246 5904578 Shal_2523 Shewanella halifaxensis HAW-EB4 proprotein convertase P YP_001674739.1 3047155 R 458817 CDS YP_001674740.1 167624446 5904579 complement(3051233..3052828) 1 NC_010334.1 KEGG: slo:Shew_1751 hypothetical protein; hypothetical protein 3052828 5904579 Shal_2524 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674740.1 3051233 R 458817 CDS YP_001674741.1 167624447 5904599 complement(3053086..3054279) 1 NC_010334.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: rci:RCIX171 transposase; transposase IS204/IS1001/IS1096/IS1165 family protein 3054279 5904599 Shal_2525 Shewanella halifaxensis HAW-EB4 transposase IS204/IS1001/IS1096/IS1165 family protein YP_001674741.1 3053086 R 458817 CDS YP_001674742.1 167624448 5904600 complement(3055072..3057006) 1 NC_010334.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sdn:Sden_1155 radical SAM; radical SAM domain-containing protein 3057006 5904600 Shal_2526 Shewanella halifaxensis HAW-EB4 radical SAM domain-containing protein YP_001674742.1 3055072 R 458817 CDS YP_001674743.1 167624449 5906278 3057314..3057658 1 NC_010334.1 KEGG: slo:Shew_2344 hypothetical protein; hypothetical protein 3057658 5906278 Shal_2527 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674743.1 3057314 D 458817 CDS YP_001674744.1 167624450 5906279 complement(3057701..3059254) 1 NC_010334.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: saz:Sama_1545 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3059254 5906279 Shal_2528 Shewanella halifaxensis HAW-EB4 binding-protein-dependent transport system inner membrane protein YP_001674744.1 3057701 R 458817 CDS YP_001674745.1 167624451 5904984 complement(3059256..3059987) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_2346 ABC transporter-related protein; ABC transporter-like protein 3059987 5904984 Shal_2529 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001674745.1 3059256 R 458817 CDS YP_001674746.1 167624452 5904985 complement(3059992..3060846) 1 NC_010334.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: saz:Sama_1543 putative phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 3060846 5904985 Shal_2530 Shewanella halifaxensis HAW-EB4 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_001674746.1 3059992 R 458817 CDS YP_001674747.1 167624453 5905042 3061133..3061807 1 NC_010334.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sbm:Shew185_2494 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3061807 5905042 Shal_2531 Shewanella halifaxensis HAW-EB4 two component transcriptional regulator YP_001674747.1 3061133 D 458817 CDS YP_001674748.1 167624454 5905043 3061798..3063150 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sbl:Sbal_2502 integral membrane sensor signal transduction histidine kinase; histidine kinase 3063150 5905043 Shal_2532 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001674748.1 3061798 D 458817 CDS YP_001674749.1 167624455 5906887 complement(3063487..3064179) 1 NC_010334.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: shm:Shewmr7_1653 prolyl 4-hydroxylase, alpha subunit; 2OG-Fe(II) oxygenase 3064179 5906887 Shal_2533 Shewanella halifaxensis HAW-EB4 2OG-Fe(II) oxygenase YP_001674749.1 3063487 R 458817 CDS YP_001674750.1 167624456 5906888 complement(3064236..3065150) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppr:PBPRB0854 hypothetical transcriptional regulator; LysR family transcriptional regulator 3065150 5906888 Shal_2534 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001674750.1 3064236 R 458817 CDS YP_001674751.1 167624457 5906771 3065359..3067410 1 NC_010334.1 PFAM: beta-lactamase domain protein; KEGG: vvy:VVA1356 alkyl sulfatase; beta-lactamase domain-containing protein 3067410 5906771 Shal_2535 Shewanella halifaxensis HAW-EB4 beta-lactamase domain-containing protein YP_001674751.1 3065359 D 458817 CDS YP_001674752.1 167624458 5906772 3067569..3068345 1 NC_010334.1 KEGG: vfi:VFA0845 hypothetical protein; hypothetical protein 3068345 5906772 Shal_2536 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674752.1 3067569 D 458817 CDS YP_001674753.1 167624459 5906566 3068608..3069864 1 NC_010334.1 KEGG: shn:Shewana3_1721 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 3069864 5906566 Shal_2537 Shewanella halifaxensis HAW-EB4 metal dependent phosphohydrolase YP_001674753.1 3068608 D 458817 CDS YP_001674754.1 167624460 5906567 3069972..3070286 1 NC_010334.1 KEGG: saz:Sama_1538 hypothetical protein; hypothetical protein 3070286 5906567 Shal_2538 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674754.1 3069972 D 458817 CDS YP_001674755.1 167624461 5905918 complement(3070369..3071316) 1 NC_010334.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: sbm:Shew185_2498 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 3071316 5905918 Shal_2539 Shewanella halifaxensis HAW-EB4 magnesium and cobalt transport protein CorA YP_001674755.1 3070369 R 458817 CDS YP_001674756.1 167624462 5905919 complement(3071426..3071791) 1 NC_010334.1 KEGG: slo:Shew_2354 hypothetical protein; hypothetical protein 3071791 5905919 Shal_2540 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674756.1 3071426 R 458817 CDS YP_001674757.1 167624463 5904601 3071938..3072612 1 NC_010334.1 KEGG: shw:Sputw3181_2412 hypothetical protein; hypothetical protein 3072612 5904601 Shal_2541 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674757.1 3071938 D 458817 CDS YP_001674758.1 167624464 5904602 complement(3072690..3073667) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aha:AHA_0957 HTH-type transcriptional regulator XapR; LysR family transcriptional regulator 3073667 5904602 Shal_2542 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001674758.1 3072690 R 458817 CDS YP_001674759.1 167624465 5906078 3073837..3074703 1 NC_010334.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 3074703 5906078 Shal_2543 Shewanella halifaxensis HAW-EB4 purine nucleoside phosphorylase YP_001674759.1 3073837 D 458817 CDS YP_001674760.1 167624466 5906079 3074716..3075978 1 NC_010334.1 TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: aha:AHA_0959 nucleoside permease; nucleoside transporter 3075978 5906079 Shal_2544 Shewanella halifaxensis HAW-EB4 nucleoside transporter YP_001674760.1 3074716 D 458817 CDS YP_001674761.1 167624467 5905429 3076038..3076916 1 NC_010334.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: aha:AHA_0961 hypothetical protein; hypothetical protein 3076916 5905429 Shal_2545 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674761.1 3076038 D 458817 CDS YP_001674762.1 167624468 5905438 complement(3083933..3084472) 1 NC_010334.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 3084472 5905438 Shal_2547 Shewanella halifaxensis HAW-EB4 D,D-heptose 1,7-bisphosphate phosphatase YP_001674762.1 3083933 R 458817 CDS YP_001674763.1 167624469 5906114 3084662..3085966 1 NC_010334.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: slo:Shew_2358 peptidase M24; peptidase M24 3085966 5906114 Shal_2548 Shewanella halifaxensis HAW-EB4 peptidase M24 YP_001674763.1 3084662 D 458817 CDS YP_001674764.1 167624470 5906161 3086141..3087421 1 NC_010334.1 PFAM: amino acid permease-associated region; Amino acid transporter transmembrane; KEGG: lpf:lpl0333 hypothetical protein; amino acid permease 3087421 5906161 Shal_2549 Shewanella halifaxensis HAW-EB4 amino acid permease YP_001674764.1 3086141 D 458817 CDS YP_001674765.1 167624471 5906162 complement(3087596..3087820) 1 NC_010334.1 KEGG: pin:Ping_1766 hypothetical protein; hypothetical protein 3087820 5906162 Shal_2550 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674765.1 3087596 R 458817 CDS YP_001674766.1 167624472 5906474 3088094..3089623 1 NC_010334.1 KEGG: ana:alr4631 unknown protein; hypothetical protein 3089623 5906474 Shal_2551 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674766.1 3088094 D 458817 CDS YP_001674767.1 167624473 5906475 3089657..3090907 1 NC_010334.1 KEGG: sde:Sde_2468 amine oxidase, flavin-containing; NAD/FAD-binding protein-like protein 3090907 5906475 Shal_2552 Shewanella halifaxensis HAW-EB4 NAD/FAD-binding protein-like protein YP_001674767.1 3089657 D 458817 CDS YP_001674768.1 167624474 5906480 complement(3091195..3092460) 1 NC_010334.1 PFAM: FAD dependent oxidoreductase; KEGG: slo:Shew_2360 D-amino-acid dehydrogenase; FAD dependent oxidoreductase 3092460 5906480 Shal_2553 Shewanella halifaxensis HAW-EB4 FAD dependent oxidoreductase YP_001674768.1 3091195 R 458817 CDS YP_001674769.1 167624475 5906481 complement(3092491..3093669) 1 NC_010334.1 PFAM: proline racemase; KEGG: slo:Shew_2361 proline racemase; proline racemase 3093669 5906481 Shal_2554 Shewanella halifaxensis HAW-EB4 proline racemase YP_001674769.1 3092491 R 458817 CDS YP_001674770.1 167624476 5906057 3093709..3094623 1 NC_010334.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: slo:Shew_2362 dihydrodipicolinate synthase; dihydrodipicolinate synthase 3094623 5906057 Shal_2555 Shewanella halifaxensis HAW-EB4 dihydrodipicolinate synthase YP_001674770.1 3093709 D 458817 CDS YP_001674771.1 167624477 5906058 3094736..3095737 1 NC_010334.1 PFAM: proline racemase; KEGG: slo:Shew_2363 proline racemase; hydroxyproline-2-epimerase 3095737 5906058 Shal_2556 Shewanella halifaxensis HAW-EB4 hydroxyproline-2-epimerase YP_001674771.1 3094736 D 458817 CDS YP_001674772.1 167624478 5905744 3095780..3097345 1 NC_010334.1 PFAM: aldehyde dehydrogenase; KEGG: slo:Shew_2364 aldehyde dehydrogenase; aldehyde dehydrogenase 3097345 5905744 Shal_2557 Shewanella halifaxensis HAW-EB4 aldehyde dehydrogenase YP_001674772.1 3095780 D 458817 CDS YP_001674773.1 167624479 5905745 3097452..3098123 1 NC_010334.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: slo:Shew_2365 transcriptional regulator, GntR family; GntR family transcriptional regulator 3098123 5905745 Shal_2558 Shewanella halifaxensis HAW-EB4 GntR family transcriptional regulator YP_001674773.1 3097452 D 458817 CDS YP_001674774.1 167624480 5905553 3098223..3099287 1 NC_010334.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase 3099287 5905553 Shal_2559 Shewanella halifaxensis HAW-EB4 3-oxoacyl-ACP synthase YP_001674774.1 3098223 D 458817 CDS YP_001674775.1 167624481 5905554 complement(3099393..3099977) 1 NC_010334.1 KEGG: slo:Shew_2367 hypothetical protein; hypothetical protein 3099977 5905554 Shal_2560 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674775.1 3099393 R 458817 CDS YP_001674776.1 167624482 5905456 3100268..3100804 1 NC_010334.1 PFAM: Heme NO binding domain protein; KEGG: vfi:VFA0071 hypothetical protein; heme NO-binding domain-containing protein 3100804 5905456 Shal_2561 Shewanella halifaxensis HAW-EB4 heme NO-binding domain-containing protein YP_001674776.1 3100268 D 458817 CDS YP_001674777.1 167624483 5905457 3100819..3102558 1 NC_010334.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: vfi:VFA0072 sensor protein LuxQ; histidine kinase 3102558 5905457 Shal_2562 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001674777.1 3100819 D 458817 CDS YP_001674778.1 167624484 5905508 complement(3102580..3103197) 1 NC_010334.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: she:Shewmr4_1516 exonuclease, RNase T and DNA polymerase III; exonuclease RNase T and DNA polymerase III 3103197 5905508 Shal_2563 Shewanella halifaxensis HAW-EB4 exonuclease RNase T and DNA polymerase III YP_001674778.1 3102580 R 458817 CDS YP_001674779.1 167624485 5905509 complement(3103315..3105162) 1 NC_010334.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: slo:Shew_2369 cyclic nucleotide-binding protein; hypothetical protein 3105162 5905509 Shal_2564 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674779.1 3103315 R 458817 CDS YP_001674780.1 167624486 5905582 complement(3105302..3107020) 1 NC_010334.1 PFAM: Na+/solute symporter; KEGG: slo:Shew_2371 Na+/solute symporter; Na+/solute symporter 3107020 5905582 Shal_2565 Shewanella halifaxensis HAW-EB4 Na+/solute symporter YP_001674780.1 3105302 R 458817 CDS YP_001674781.1 167624487 5905583 complement(3107060..3107326) 1 NC_010334.1 KEGG: slo:Shew_2372 hypothetical protein; hypothetical protein 3107326 5905583 Shal_2566 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674781.1 3107060 R 458817 CDS YP_001674782.1 167624488 5903372 complement(3108026..3108919) 1 NC_010334.1 SMART: protein phosphatase 2C domain protein; KEGG: stt:t4521 hypothetical protein; protein serine/threonine phosphatase 3108919 5903372 Shal_2567 Shewanella halifaxensis HAW-EB4 protein serine/threonine phosphatase YP_001674782.1 3108026 R 458817 CDS YP_001674783.1 167624489 5903373 complement(3109067..3110008) 1 NC_010334.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: slo:Shew_3322 RarD protein, DMT superfamily transporter; transporter DMT superfamily protein 3110008 5903373 Shal_2568 Shewanella halifaxensis HAW-EB4 transporter DMT superfamily protein YP_001674783.1 3109067 R 458817 CDS YP_001674784.1 167624490 5904762 3110459..3111868 1 NC_010334.1 KEGG: vpa:VPA0754 hypothetical protein; hypothetical protein 3111868 5904762 Shal_2569 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674784.1 3110459 D 458817 CDS YP_001674785.1 167624491 5904763 3112191..3112670 1 NC_010334.1 PFAM: PEBP family protein; KEGG: aeh:Mlg_1616 YbhB and YbcL; PEBP family protein 3112670 5904763 Shal_2570 Shewanella halifaxensis HAW-EB4 PEBP family protein YP_001674785.1 3112191 D 458817 CDS YP_001674786.1 167624492 5904767 complement(3112919..3113557) 1 NC_010334.1 PFAM: DSBA oxidoreductase; KEGG: son:SO_2860 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase 3113557 5904767 Shal_2571 Shewanella halifaxensis HAW-EB4 DSBA oxidoreductase YP_001674786.1 3112919 R 458817 CDS YP_001674787.1 167624493 5904768 complement(3113598..3114440) 1 NC_010334.1 KEGG: slo:Shew_2374 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3114440 5904768 Shal_2572 Shewanella halifaxensis HAW-EB4 NAD-dependent epimerase/dehydratase YP_001674787.1 3113598 R 458817 CDS YP_001674788.1 167624494 5903532 complement(3114544..3115740) 1 NC_010334.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: shn:Shewana3_1571 metal dependent phosphohydrolase; metal dependent phosphohydrolase 3115740 5903532 Shal_2573 Shewanella halifaxensis HAW-EB4 metal dependent phosphohydrolase YP_001674788.1 3114544 R 458817 CDS YP_001674789.1 167624495 5903533 complement(3116277..3116795) 1 NC_010334.1 KEGG: slo:Shew_2376 hypothetical protein; hypothetical protein 3116795 5903533 Shal_2574 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674789.1 3116277 R 458817 CDS YP_001674790.1 167624496 5903723 complement(3116944..3118947) 1 NC_010334.1 KEGG: slo:Shew_2377 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase; NAD-dependent DNA ligase 3118947 5903723 Shal_2575 Shewanella halifaxensis HAW-EB4 NAD-dependent DNA ligase YP_001674790.1 3116944 R 458817 CDS YP_001674791.1 167624497 5903724 complement(3119105..3120025) 1 NC_010334.1 TIGRFAM: cell division protein ZipA; PFAM: ZipA FtsZ-binding region; KEGG: slo:Shew_2378 cell division protein ZipA; cell division protein ZipA 3120025 5903724 Shal_2576 Shewanella halifaxensis HAW-EB4 cell division protein ZipA YP_001674791.1 3119105 R 458817 CDS YP_001674792.1 167624498 5904172 complement(3120049..3123480) 1 NC_010334.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: slo:Shew_2379 chromosome segregation protein SMC; chromosome segregation protein SMC 3123480 5904172 Shal_2577 Shewanella halifaxensis HAW-EB4 chromosome segregation protein SMC YP_001674792.1 3120049 R 458817 CDS YP_001674793.1 167624499 5904173 3123698..3124471 1 NC_010334.1 putative role in sulfur assimilation; putative sulfate transport protein CysZ 3124471 5904173 Shal_2578 Shewanella halifaxensis HAW-EB4 putative sulfate transport protein CysZ YP_001674793.1 3123698 D 458817 CDS YP_001674794.1 167624500 5904147 complement(3124625..3125872) 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: saz:Sama_1511 response regulator receiver protein; response regulator receiver modulated diguanylate cyclase 3125872 5904147 Shal_2579 Shewanella halifaxensis HAW-EB4 response regulator receiver modulated diguanylate cyclase YP_001674794.1 3124625 R 458817 CDS YP_001674795.1 167624501 5904148 complement(3126071..3127411) 1 NC_010334.1 PFAM: RDD domain containing protein; KEGG: shn:Shewana3_1562 RDD domain containing protein; RDD domain-containing protein 3127411 5904148 Shal_2580 Shewanella halifaxensis HAW-EB4 RDD domain-containing protein YP_001674795.1 3126071 R 458817 CDS YP_001674796.1 167624502 5904087 3127650..3128618 1 NC_010334.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: slo:Shew_2382 cysteine synthase A; cysteine synthase A 3128618 5904087 Shal_2581 Shewanella halifaxensis HAW-EB4 cysteine synthase A YP_001674796.1 3127650 D 458817 CDS YP_001674797.1 167624503 5904088 complement(3128651..3129328) 1 NC_010334.1 PFAM: regulatory protein TetR; KEGG: slo:Shew_2383 putative transcriptional regulator, TetR family; TetR family transcriptional regulator 3129328 5904088 Shal_2582 Shewanella halifaxensis HAW-EB4 TetR family transcriptional regulator YP_001674797.1 3128651 R 458817 CDS YP_001674798.1 167624504 5904065 3129502..3130575 1 NC_010334.1 KEGG: sfr:Sfri_2128 O-methyltransferase, putative; O-methyltransferase 3130575 5904065 Shal_2583 Shewanella halifaxensis HAW-EB4 O-methyltransferase YP_001674798.1 3129502 D 458817 CDS YP_001674799.1 167624505 5904066 3130878..3131864 1 NC_010334.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: shw:Sputw3181_1637 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 3131864 5904066 Shal_2584 Shewanella halifaxensis HAW-EB4 C4-dicarboxylate transporter/malic acid transport protein YP_001674799.1 3130878 D 458817 CDS YP_001674800.1 167624506 5904035 3132372..3135080 1 NC_010334.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_2385 TonB-dependent receptor, plug; TonB-dependent receptor plug 3135080 5904035 Shal_2585 Shewanella halifaxensis HAW-EB4 TonB-dependent receptor plug YP_001674800.1 3132372 D 458817 CDS YP_001674801.1 167624507 5904036 complement(3135155..3136699) 1 NC_010334.1 PFAM: C4-dicarboxylate anaerobic carrier; KEGG: shn:Shewana3_1557 C4-dicarboxylate anaerobic carrier; hypothetical protein 3136699 5904036 Shal_2586 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674801.1 3135155 R 458817 CDS YP_001674802.1 167624508 5903974 complement(3136778..3138220) 1 NC_010334.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3138220 panF 5903974 panF Shewanella halifaxensis HAW-EB4 sodium/panthothenate symporter YP_001674802.1 3136778 R 458817 CDS YP_001674803.1 167624509 5903975 complement(3138213..3138389) 1 NC_010334.1 KEGG: dps:DP0461 hypothetical protein; hypothetical protein 3138389 5903975 Shal_2588 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674803.1 3138213 R 458817 CDS YP_001674804.1 167624510 5903696 3138844..3139749 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_1634 transcriptional regulator, LysR family; LysR family transcriptional regulator 3139749 5903696 Shal_2589 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001674804.1 3138844 D 458817 CDS YP_001674805.1 167624511 5903697 complement(3139804..3141285) 1 NC_010334.1 PFAM: formate/nitrite transporter; CBS domain containing protein; KEGG: shw:Sputw3181_1633 formate/nitrite transporter; formate/nitrite transporter 3141285 5903697 Shal_2590 Shewanella halifaxensis HAW-EB4 formate/nitrite transporter YP_001674805.1 3139804 R 458817 CDS YP_001674806.1 167624512 5903850 3142208..3143740 1 NC_010334.1 KEGG: slo:Shew_2389 hypothetical protein; hypothetical protein 3143740 5903850 Shal_2591 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674806.1 3142208 D 458817 CDS YP_001674807.1 167624513 5903851 3144304..3146586 1 NC_010334.1 KEGG: slo:Shew_2390 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; formate acetyltransferase 3146586 5903851 Shal_2592 Shewanella halifaxensis HAW-EB4 formate acetyltransferase YP_001674807.1 3144304 D 458817 CDS YP_001674808.1 167624514 5903902 3146651..3147391 1 NC_010334.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 3147391 pflA 5903902 pflA Shewanella halifaxensis HAW-EB4 pyruvate formate lyase-activating enzyme 1 YP_001674808.1 3146651 D 458817 CDS YP_001674809.1 167624515 5903903 complement(3147426..3147869) 1 NC_010334.1 PFAM: protein of unknown function DUF412; KEGG: son:SO_2914 hypothetical protein; hypothetical protein 3147869 5903903 Shal_2594 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674809.1 3147426 R 458817 CDS YP_001674810.1 167624516 5903919 3148065..3149261 1 NC_010334.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 3149261 5903919 Shal_2595 Shewanella halifaxensis HAW-EB4 acetate kinase YP_001674810.1 3148065 D 458817 CDS YP_001674811.1 167624517 5903920 3149368..3151515 1 NC_010334.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 3151515 5903920 Shal_2596 Shewanella halifaxensis HAW-EB4 phosphate acetyltransferase YP_001674811.1 3149368 D 458817 CDS YP_001674812.1 167624518 5906897 complement(3151587..3151937) 1 NC_010334.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pin:Ping_1714 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 3151937 5906897 Shal_2597 Shewanella halifaxensis HAW-EB4 antibiotic biosynthesis monooxygenase YP_001674812.1 3151587 R 458817 CDS YP_001674813.1 167624519 5906898 3152438..3152950 1 NC_010334.1 KEGG: shn:Shewana3_1548 hypothetical protein; hypothetical protein 3152950 5906898 Shal_2598 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674813.1 3152438 D 458817 CDS YP_001674814.1 167624520 5905417 complement(3153548..3154456) 1 NC_010334.1 KEGG: son:SO_2919 hypothetical protein; hypothetical protein 3154456 5905417 Shal_2599 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674814.1 3153548 R 458817 CDS YP_001674815.1 167624521 5905418 complement(3154462..3155613) 1 NC_010334.1 PFAM: protein of unknown function UPF0118; KEGG: slo:Shew_2398 protein of unknown function UPF0118; hypothetical protein 3155613 5905418 Shal_2600 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674815.1 3154462 R 458817 CDS YP_001674816.1 167624522 5905402 3155700..3156071 1 NC_010334.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 3156071 folX 5905402 folX Shewanella halifaxensis HAW-EB4 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase YP_001674816.1 3155700 D 458817 CDS YP_001674817.1 167624523 5905403 3156138..3157043 1 NC_010334.1 PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: sfr:Sfri_2559 hypothetical protein; hypothetical protein 3157043 5905403 Shal_2602 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674817.1 3156138 D 458817 CDS YP_001674818.1 167624524 5905000 complement(3157138..3159591) 1 NC_010334.1 PFAM: protein of unknown function DUF214; KEGG: sbm:Shew185_2707 protein of unknown function DUF214; hypothetical protein 3159591 5905000 Shal_2603 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674818.1 3157138 R 458817 CDS YP_001674819.1 167624525 5905001 complement(3159582..3160310) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_2402 ABC transporter-related protein; ABC transporter-like protein 3160310 5905001 Shal_2604 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001674819.1 3159582 R 458817 CDS YP_001674820.1 167624526 5904944 3160360..3160920 1 NC_010334.1 PFAM: lipolytic protein G-D-S-L family; KEGG: sfr:Sfri_2568 arylesterase; arylesterase 3160920 5904944 Shal_2605 Shewanella halifaxensis HAW-EB4 arylesterase YP_001674820.1 3160360 D 458817 CDS YP_001674821.1 167624527 5904945 3161040..3162164 1 NC_010334.1 KEGG: saz:Sama_1484 hypothetical protein; hypothetical protein 3162164 5904945 Shal_2606 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674821.1 3161040 D 458817 CDS YP_001674822.1 167624528 5904017 3162582..3165236 1 NC_010334.1 KEGG: slo:Shew_2404 hypothetical protein; hypothetical protein 3165236 5904017 Shal_2607 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674822.1 3162582 D 458817 CDS YP_001674823.1 167624529 5904018 3165364..3166554 1 NC_010334.1 KEGG: shm:Shewmr7_1538 hypothetical protein; hypothetical protein 3166554 5904018 Shal_2608 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674823.1 3165364 D 458817 CDS YP_001674824.1 167624530 5903900 complement(3166590..3167633) 1 NC_010334.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: son:SO_2932 transcriptional regulator, AraC family; AraC family transcriptional regulator 3167633 5903900 Shal_2609 Shewanella halifaxensis HAW-EB4 AraC family transcriptional regulator YP_001674824.1 3166590 R 458817 CDS YP_001674825.1 167624531 5903901 3168062..3168823 1 NC_010334.1 PFAM: Methyltransferase type 12; KEGG: sdn:Sden_0896 methyltransferase type 11; type 12 methyltransferase 3168823 5903901 Shal_2610 Shewanella halifaxensis HAW-EB4 type 12 methyltransferase YP_001674825.1 3168062 D 458817 CDS YP_001674826.1 167624532 5903836 3169169..3170692 1 NC_010334.1 PFAM: Integrase catalytic region; KEGG: kpn:KPN_pKPN3p05906 Sea24; integrase catalytic subunit 3170692 5903836 Shal_2611 Shewanella halifaxensis HAW-EB4 integrase catalytic subunit YP_001674826.1 3169169 D 458817 CDS YP_001674827.1 167624533 5903837 complement(3171168..3172196) 1 NC_010334.1 SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 3172196 5903837 Shal_2612 Shewanella halifaxensis HAW-EB4 putative periplasmic protease YP_001674827.1 3171168 R 458817 CDS YP_001674828.1 167624534 5903781 complement(3172335..3174833) 1 NC_010334.1 KEGG: slo:Shew_2408 hypothetical protein; hypothetical protein 3174833 5903781 Shal_2613 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674828.1 3172335 R 458817 CDS YP_001674829.1 167624535 5903782 3175095..3175832 1 NC_010334.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: slo:Shew_2409 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 3175832 5903782 Shal_2614 Shewanella halifaxensis HAW-EB4 short chain dehydrogenase YP_001674829.1 3175095 D 458817 CDS YP_001674830.1 167624536 5904217 complement(3175964..3176836) 1 NC_010334.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_2246 pseudouridine synthase; pseudouridine synthase 3176836 5904217 Shal_2615 Shewanella halifaxensis HAW-EB4 pseudouridine synthase YP_001674830.1 3175964 R 458817 CDS YP_001674831.1 167624537 5904218 complement(3176829..3177425) 1 NC_010334.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: sbm:Shew185_2718 putative transcriptional regulator; segregation and condensation protein B 3177425 5904218 Shal_2616 Shewanella halifaxensis HAW-EB4 segregation and condensation protein B YP_001674831.1 3176829 R 458817 CDS YP_001674832.1 167624538 5903832 complement(3177426..3178214) 1 NC_010334.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: slo:Shew_2248 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 3178214 5903832 Shal_2617 Shewanella halifaxensis HAW-EB4 chromosome segregation and condensation protein ScpA YP_001674832.1 3177426 R 458817 CDS YP_001674833.1 167624539 5903833 complement(3178391..3179011) 1 NC_010334.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: slo:Shew_2249 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 3179011 5903833 Shal_2618 Shewanella halifaxensis HAW-EB4 Sua5/YciO/YrdC/YwlC family protein YP_001674833.1 3178391 R 458817 CDS YP_001674834.1 167624540 5904003 complement(3179008..3179886) 1 NC_010334.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: shw:Sputw3181_1606 PHP C-terminal domain protein; phosphotransferase domain-containing protein 3179886 5904003 Shal_2619 Shewanella halifaxensis HAW-EB4 phosphotransferase domain-containing protein YP_001674834.1 3179008 R 458817 CDS YP_001674835.1 167624541 5904004 complement(3180096..3180533) 1 NC_010334.1 TIGRFAM: TonB family protein; KEGG: she:Shewmr4_3544 TonB family protein; TonB family protein 3180533 5904004 Shal_2620 Shewanella halifaxensis HAW-EB4 TonB family protein YP_001674835.1 3180096 R 458817 CDS YP_001674836.1 167624542 5905862 3180727..3181086 1 NC_010334.1 hypothetical protein 3181086 5905862 Shal_2621 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674836.1 3180727 D 458817 CDS YP_001674837.1 167624543 5905863 3181560..3182105 1 NC_010334.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 3182105 5905863 Shal_2622 Shewanella halifaxensis HAW-EB4 intracellular septation protein A YP_001674837.1 3181560 D 458817 CDS YP_001674838.1 167624544 5902791 3182105..3182404 1 NC_010334.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 3182404 5902791 Shal_2623 Shewanella halifaxensis HAW-EB4 YciI-like protein YP_001674838.1 3182105 D 458817 CDS YP_001674839.1 167624545 5902792 3182422..3183228 1 NC_010334.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 3183228 5902792 Shal_2624 Shewanella halifaxensis HAW-EB4 exonuclease III YP_001674839.1 3182422 D 458817 CDS YP_001674840.1 167624546 5902682 complement(3183302..3184756) 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: slo:Shew_2263 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3184756 5902682 Shal_2625 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis sensory transducer YP_001674840.1 3183302 R 458817 CDS YP_001674841.1 167624547 5902683 complement(3184862..3185350) 1 NC_010334.1 PFAM: protein of unknown function DUF1097; KEGG: son:SO_3047 hypothetical protein; hypothetical protein 3185350 5902683 Shal_2626 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674841.1 3184862 R 458817 CDS YP_001674842.1 167624548 5902694 complement(3185725..3186369) 1 NC_010334.1 PFAM: beta-lactamase domain protein; KEGG: shm:Shewmr7_1500 beta-lactamase domain protein; beta-lactamase domain-containing protein 3186369 5902694 Shal_2627 Shewanella halifaxensis HAW-EB4 beta-lactamase domain-containing protein YP_001674842.1 3185725 R 458817 CDS YP_001674843.1 167624549 5902695 3186683..3187984 1 NC_010334.1 PFAM: alpha/beta hydrolase fold; KEGG: slo:Shew_2270 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3187984 5902695 Shal_2628 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase fold protein YP_001674843.1 3186683 D 458817 CDS YP_001674844.1 167624550 5902877 3188193..3188387 1 NC_010334.1 KEGG: slo:Shew_2284 hypothetical protein; hypothetical protein 3188387 5902877 Shal_2629 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674844.1 3188193 D 458817 CDS YP_001674845.1 167624551 5902878 complement(3188388..3189452) 1 NC_010334.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase 3189452 5902878 Shal_2630 Shewanella halifaxensis HAW-EB4 galactose-1-phosphate uridylyltransferase YP_001674845.1 3188388 R 458817 CDS YP_001674846.1 167624552 5906968 3189832..3189966 1 NC_010334.1 KEGG: vco:VC0395_0697 transcriptional regulator, LysR family; LysR family transcriptional regulator 3189966 5906968 Shal_2631 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001674846.1 3189832 D 458817 CDS YP_001674847.1 167624553 5906969 3190216..3192087 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: sbl:Sbal_0193 methyl-accepting chemotaxis sensory transducer; Cache sensor containing methyl-accepting chemotaxis sensory transducer 3192087 5906969 Shal_2632 Shewanella halifaxensis HAW-EB4 Cache sensor containing methyl-accepting chemotaxis sensory transducer YP_001674847.1 3190216 D 458817 CDS YP_001674848.1 167624554 5906396 complement(3192483..3194543) 1 NC_010334.1 KEGG: slo:Shew_2294 hypothetical protein; hypothetical protein 3194543 5906396 Shal_2634 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674848.1 3192483 R 458817 CDS YP_001674849.1 167624555 5907014 complement(3194757..3195635) 1 NC_010334.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: slo:Shew_2295 transcriptional regulator, AraC family; AraC family transcriptional regulator 3195635 5907014 Shal_2635 Shewanella halifaxensis HAW-EB4 AraC family transcriptional regulator YP_001674849.1 3194757 R 458817 CDS YP_001674850.1 167624556 5907015 complement(3195843..3197879) 1 NC_010334.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 3197879 5907015 Shal_2636 Shewanella halifaxensis HAW-EB4 DNA topoisomerase III YP_001674850.1 3195843 R 458817 CDS YP_001674851.1 167624557 5905623 complement(3198108..3199622) 1 NC_010334.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 3199622 5905623 Shal_2637 Shewanella halifaxensis HAW-EB4 amidophosphoribosyltransferase YP_001674851.1 3198108 R 458817 CDS YP_001674852.1 167624558 5905624 complement(3199721..3200209) 1 NC_010334.1 PFAM: Colicin V production protein; KEGG: sfr:Sfri_1398 colicin V production protein; colicin V production protein 3200209 5905624 Shal_2638 Shewanella halifaxensis HAW-EB4 colicin V production protein YP_001674852.1 3199721 R 458817 CDS YP_001674853.1 167624559 5907028 complement(3200325..3200954) 1 NC_010334.1 PFAM: Sporulation domain protein; KEGG: saz:Sama_2148 sporulation related; sporulation domain-containing protein 3200954 5907028 Shal_2639 Shewanella halifaxensis HAW-EB4 sporulation domain-containing protein YP_001674853.1 3200325 R 458817 CDS YP_001674854.1 167624560 5907029 complement(3200947..3202212) 1 NC_010334.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: she:Shewmr4_1427 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 3202212 5907029 Shal_2640 Shewanella halifaxensis HAW-EB4 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_001674854.1 3200947 R 458817 CDS YP_001674855.1 167624561 5906521 complement(3202310..3203095) 1 NC_010334.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 3203095 truA 5906521 truA Shewanella halifaxensis HAW-EB4 tRNA pseudouridine synthase A YP_001674855.1 3202310 R 458817 CDS YP_001674856.1 167624562 5906522 complement(3203260..3206358) 1 NC_010334.1 KEGG: sbm:Shew185_2760 hypothetical protein; hypothetical protein 3206358 5906522 Shal_2642 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674856.1 3203260 R 458817 CDS YP_001674857.1 167624563 5905882 complement(3206538..3207554) 1 NC_010334.1 KEGG: slo:Shew_2308 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; aspartate-semialdehyde dehydrogenase 3207554 5905882 Shal_2643 Shewanella halifaxensis HAW-EB4 aspartate-semialdehyde dehydrogenase YP_001674857.1 3206538 R 458817 CDS YP_001674858.1 167624564 5905883 complement(3207557..3208687) 1 NC_010334.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sbm:Shew185_2762 D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase catalytic subunit 3208687 5905883 Shal_2644 Shewanella halifaxensis HAW-EB4 D-isomer specific 2-hydroxyacid dehydrogenase catalytic subunit YP_001674858.1 3207557 R 458817 CDS YP_001674859.1 167624565 5904954 3209024..3209620 1 NC_010334.1 KEGG: mxa:MXAN_5404 hypothetical protein; hypothetical protein 3209620 5904954 Shal_2645 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674859.1 3209024 D 458817 CDS YP_001674860.1 167624566 5904487 complement(3210546..3211469) 1 NC_010334.1 PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: eca:ECA2039 putative ornithine cyclodeaminase; ornithine cyclodeaminase 3211469 5904487 Shal_2647 Shewanella halifaxensis HAW-EB4 ornithine cyclodeaminase YP_001674860.1 3210546 R 458817 CDS YP_001674861.1 167624567 5904488 complement(3211471..3212637) 1 NC_010334.1 KEGG: eca:ECA2038 hypothetical protein; hypothetical protein 3212637 5904488 Shal_2648 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674861.1 3211471 R 458817 CDS YP_001674862.1 167624568 5904850 3212836..3213774 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: atc:AGR_L_412GM hypothetical protein; LysR family transcriptional regulator 3213774 5904850 Shal_2649 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001674862.1 3212836 D 458817 CDS YP_001674863.1 167624569 5904851 3214000..3214419 1 NC_010334.1 PFAM: NUDIX hydrolase; KEGG: vha:VIBHAR_06029 hypothetical protein; NUDIX hydrolase 3214419 5904851 Shal_2650 Shewanella halifaxensis HAW-EB4 NUDIX hydrolase YP_001674863.1 3214000 D 458817 CDS YP_001674864.1 167624570 5905480 complement(3214556..3216280) 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: noc:Noc_2021 PAS sensor diguanylate cyclase/phophodiesterase; diguanylate cyclase/phosphodiesterase 3216280 5905480 Shal_2651 Shewanella halifaxensis HAW-EB4 diguanylate cyclase/phosphodiesterase YP_001674864.1 3214556 R 458817 CDS YP_001674865.1 167624571 5905481 complement(3216285..3217289) 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; KEGG: vvy:VVA0582 anti-sigma regulatory factor; putative anti-sigma regulatory factor 3217289 5905481 Shal_2652 Shewanella halifaxensis HAW-EB4 putative anti-sigma regulatory factor YP_001674865.1 3216285 R 458817 CDS YP_001674866.1 167624572 5905335 complement(3217289..3217717) 1 NC_010334.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: fal:FRAAL1275 positive regulator of sigma-B; anti-sigma-factor antagonist 3217717 5905335 Shal_2653 Shewanella halifaxensis HAW-EB4 anti-sigma-factor antagonist YP_001674866.1 3217289 R 458817 CDS YP_001674867.1 167624573 5905336 complement(3218359..3219633) 1 NC_010334.1 PFAM: Beta-ketoacyl synthase; KEGG: slo:Shew_2410 beta-ketoacyl synthase; beta-ketoacyl synthase 3219633 5905336 Shal_2654 Shewanella halifaxensis HAW-EB4 beta-ketoacyl synthase YP_001674867.1 3218359 R 458817 CDS YP_001674868.1 167624574 5905074 3219801..3221711 1 NC_010334.1 PFAM: FAD dependent oxidoreductase; KEGG: shn:Shewana3_1474 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3221711 5905074 Shal_2655 Shewanella halifaxensis HAW-EB4 FAD dependent oxidoreductase YP_001674868.1 3219801 D 458817 CDS YP_001674869.1 167624575 5905075 complement(3221826..3222350) 1 NC_010334.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: slo:Shew_2412 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 3222350 5905075 Shal_2656 Shewanella halifaxensis HAW-EB4 tRNA/rRNA methyltransferase SpoU YP_001674869.1 3221826 R 458817 CDS YP_001674870.1 167624576 5904284 complement(3222421..3222690) 1 NC_010334.1 PFAM: YfcL protein; KEGG: shw:Sputw3181_1560 hypothetical protein; hypothetical protein 3222690 5904284 Shal_2657 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674870.1 3222421 R 458817 CDS YP_001674871.1 167624577 5904285 complement(3222844..3223965) 1 NC_010334.1 PFAM: ATP-NAD/AcoX kinase; KEGG: sbm:Shew185_2767 ATP-NAD/AcoX kinase; ATP-NAD/AcoX kinase 3223965 5904285 Shal_2658 Shewanella halifaxensis HAW-EB4 ATP-NAD/AcoX kinase YP_001674871.1 3222844 R 458817 CDS YP_001674872.1 167624578 5904359 complement(3224009..3225163) 1 NC_010334.1 PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: sbm:Shew185_2768 major facilitator superfamily MFS_1; major facilitator transporter 3225163 5904359 Shal_2659 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001674872.1 3224009 R 458817 CDS YP_001674873.1 167624579 5904360 complement(3225163..3226257) 1 NC_010334.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 3226257 5904360 Shal_2660 Shewanella halifaxensis HAW-EB4 chorismate synthase YP_001674873.1 3225163 R 458817 CDS YP_001674874.1 167624580 5903025 complement(3226407..3227351) 1 NC_010334.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 3227351 5903025 Shal_2661 Shewanella halifaxensis HAW-EB4 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_001674874.1 3226407 R 458817 CDS YP_001674875.1 167624581 5903026 3227431..3227961 1 NC_010334.1 PFAM: Smr protein/MutS2; KEGG: slo:Shew_2418 Smr protein/MutS2; hypothetical protein 3227961 5903026 Shal_2662 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674875.1 3227431 D 458817 CDS YP_001674876.1 167624582 5906767 complement(3228057..3228527) 1 NC_010334.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: she:Shewmr4_1413 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase SixA 3228527 5906767 Shal_2663 Shewanella halifaxensis HAW-EB4 phosphohistidine phosphatase SixA YP_001674876.1 3228057 R 458817 CDS YP_001674877.1 167624583 5906768 3228884..3231673 1 NC_010334.1 PFAM: peptidase M16 domain protein; KEGG: slo:Shew_2420 peptidase M16 domain protein; peptidase M16 domain-containing protein 3231673 5906768 Shal_2664 Shewanella halifaxensis HAW-EB4 peptidase M16 domain-containing protein YP_001674877.1 3228884 D 458817 CDS YP_001674878.1 167624584 5903200 3231979..3236265 1 NC_010334.1 KEGG: slo:Shew_2421 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3236265 5903200 Shal_2665 Shewanella halifaxensis HAW-EB4 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001674878.1 3231979 D 458817 CDS YP_001674879.1 167624585 5903201 3236364..3237560 1 NC_010334.1 KEGG: shw:Sputw3181_1551 hypothetical protein; hypothetical protein 3237560 5903201 Shal_2666 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674879.1 3236364 D 458817 CDS YP_001674880.1 167624586 5906644 3237724..3237840 1 NC_010334.1 KEGG: sbm:Shew185_2776 hypothetical protein; hypothetical protein 3237840 5906644 Shal_2668 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674880.1 3237724 D 458817 CDS YP_001674881.1 167624587 5902950 complement(3237976..3238176) 1 NC_010334.1 KEGG: slo:Shew_2424 hypothetical protein; hypothetical protein 3238176 5902950 Shal_2669 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674881.1 3237976 R 458817 CDS YP_001674882.1 167624588 5902951 complement(3238430..3240556) 1 NC_010334.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 3240556 fadJ 5902951 fadJ Shewanella halifaxensis HAW-EB4 multifunctional fatty acid oxidation complex subunit alpha YP_001674882.1 3238430 R 458817 CDS YP_001674883.1 167624589 5906132 complement(3240561..3241871) 1 NC_010334.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 3241871 fadI 5906132 fadI Shewanella halifaxensis HAW-EB4 3-ketoacyl-CoA thiolase YP_001674883.1 3240561 R 458817 CDS YP_001674884.1 167624590 5906133 3242288..3243244 1 NC_010334.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: sbm:Shew185_2782 ATPase associated with various cellular activities AAA_3; ATPase 3243244 5906133 Shal_2672 Shewanella halifaxensis HAW-EB4 ATPase YP_001674884.1 3242288 D 458817 CDS YP_001674885.1 167624591 5902905 3243244..3244173 1 NC_010334.1 PFAM: protein of unknown function DUF58; KEGG: shm:Shewmr7_1470 protein of unknown function DUF58; hypothetical protein 3244173 5902905 Shal_2673 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674885.1 3243244 D 458817 CDS YP_001674886.1 167624592 5902906 3244174..3244692 1 NC_010334.1 KEGG: slo:Shew_2429 hypothetical protein; hypothetical protein 3244692 5902906 Shal_2674 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674886.1 3244174 D 458817 CDS YP_001674887.1 167624593 5902998 3244686..3245723 1 NC_010334.1 PFAM: von Willebrand factor type A; KEGG: son:SO_3093 von Willebrand factor type A domain protein; von Willebrand factor type A 3245723 5902998 Shal_2675 Shewanella halifaxensis HAW-EB4 von Willebrand factor type A YP_001674887.1 3244686 D 458817 CDS YP_001674888.1 167624594 5902999 3245726..3247744 1 NC_010334.1 PFAM: TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: she:Shewmr4_1402 tetratricopeptide TPR_2 repeat protein; hypothetical protein 3247744 5902999 Shal_2676 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674888.1 3245726 D 458817 CDS YP_001674889.1 167624595 5903180 3247738..3249366 1 NC_010334.1 KEGG: sbm:Shew185_2787 hypothetical protein; hypothetical protein 3249366 5903180 Shal_2677 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674889.1 3247738 D 458817 CDS YP_001674890.1 167624596 5903181 3249951..3250514 1 NC_010334.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 3250514 5903181 Shal_2678 Shewanella halifaxensis HAW-EB4 RNA polymerase sigma factor YP_001674890.1 3249951 D 458817 CDS YP_001674891.1 167624597 5906956 3250507..3251211 1 NC_010334.1 KEGG: slo:Shew_2434 hypothetical protein; hypothetical protein 3251211 5906956 Shal_2679 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674891.1 3250507 D 458817 CDS YP_001674892.1 167624598 5906957 3251352..3252803 1 NC_010334.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: slo:Shew_2435 sodium/proline symporter; sodium/proline symporter 3252803 5906957 Shal_2680 Shewanella halifaxensis HAW-EB4 sodium/proline symporter YP_001674892.1 3251352 D 458817 CDS YP_001674893.1 167624599 5902976 3253073..3254452 1 NC_010334.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: slo:Shew_2436 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 3254452 5902976 Shal_2681 Shewanella halifaxensis HAW-EB4 aromatic hydrocarbon degradation membrane protein YP_001674893.1 3253073 D 458817 CDS YP_001674894.1 167624600 5902977 3254638..3255354 1 NC_010334.1 PFAM: protein of unknown function DUF541; KEGG: shw:Sputw3181_1536 protein of unknown function DUF541; hypothetical protein 3255354 5902977 Shal_2682 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674894.1 3254638 D 458817 CDS YP_001674895.1 167624601 5903794 3255554..3256591 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sbm:Shew185_2794 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3256591 5903794 Shal_2683 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001674895.1 3255554 D 458817 CDS YP_001674896.1 167624602 5903795 3256627..3259836 1 NC_010334.1 PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_1458 acriflavin resistance protein; acriflavin resistance protein 3259836 5903795 Shal_2684 Shewanella halifaxensis HAW-EB4 acriflavin resistance protein YP_001674896.1 3256627 D 458817 CDS YP_001674897.1 167624603 5907031 3259923..3260141 1 NC_010334.1 KEGG: sbm:Shew185_2796 hypothetical protein; hypothetical protein 3260141 5907031 Shal_2685 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674897.1 3259923 D 458817 CDS YP_001674898.1 167624604 5907032 3260166..3260561 1 NC_010334.1 PFAM: Rhodanese domain protein; KEGG: shn:Shewana3_1444 rhodanese domain protein; rhodanese domain-containing protein 3260561 5907032 Shal_2686 Shewanella halifaxensis HAW-EB4 rhodanese domain-containing protein YP_001674898.1 3260166 D 458817 CDS YP_001674899.1 167624605 5904353 3260705..3261022 1 NC_010334.1 KEGG: shw:Sputw3181_2553 hypothetical protein; hypothetical protein 3261022 5904353 Shal_2687 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674899.1 3260705 D 458817 CDS YP_001674900.1 167624606 5904354 complement(3261095..3261901) 1 NC_010334.1 KEGG: sfr:Sfri_2437 hypothetical protein; hypothetical protein 3261901 5904354 Shal_2688 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674900.1 3261095 R 458817 CDS YP_001674901.1 167624607 5905110 complement(3262000..3262629) 1 NC_010334.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 3262629 ribA 5905110 ribA Shewanella halifaxensis HAW-EB4 GTP cyclohydrolase II YP_001674901.1 3262000 R 458817 CDS YP_001674902.1 167624608 5905111 complement(3262844..3263200) 1 NC_010334.1 KEGG: sdn:Sden_1446 hypothetical protein; hypothetical protein 3263200 5905111 Shal_2690 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674902.1 3262844 R 458817 CDS YP_001674903.1 167624609 5906180 complement(3263333..3263797) 1 NC_010334.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: slo:Shew_2448 anaerobic ribonucleoside-triphosphate reductase activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein 3263797 5906180 Shal_2691 Shewanella halifaxensis HAW-EB4 anaerobic ribonucleoside-triphosphate reductase activating protein YP_001674903.1 3263333 R 458817 CDS YP_001674904.1 167624610 5906181 complement(3263900..3266017) 1 NC_010334.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 3266017 5906181 Shal_2692 Shewanella halifaxensis HAW-EB4 anaerobic ribonucleoside triphosphate reductase YP_001674904.1 3263900 R 458817 CDS YP_001674905.1 167624611 5906199 complement(3266272..3266958) 1 NC_010334.1 KEGG: sbm:Shew185_1649 hypothetical protein; hypothetical protein 3266958 5906199 Shal_2693 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674905.1 3266272 R 458817 CDS YP_001674906.1 167624612 5906200 complement(3267299..3268276) 1 NC_010334.1 PFAM: Patatin; KEGG: son:SO_2836 hypothetical protein; patatin 3268276 5906200 Shal_2694 Shewanella halifaxensis HAW-EB4 patatin YP_001674906.1 3267299 R 458817 CDS YP_001674907.1 167624613 5906253 3268572..3269948 1 NC_010334.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: slo:Shew_2452 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 3269948 5906253 Shal_2695 Shewanella halifaxensis HAW-EB4 DEAD/DEAH box helicase YP_001674907.1 3268572 D 458817 CDS YP_001674908.1 167624614 5906254 3270260..3270703 1 NC_010334.1 KEGG: slo:Shew_2453 hypothetical protein; hypothetical protein 3270703 5906254 Shal_2696 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674908.1 3270260 D 458817 CDS YP_001674909.1 167624615 5906293 3270788..3271294 1 NC_010334.1 PFAM: protein of unknown function DUF45; KEGG: son:SO_2840 hypothetical protein; hypothetical protein 3271294 5906293 Shal_2697 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674909.1 3270788 D 458817 CDS YP_001674910.1 167624616 5906294 3271436..3271837 1 NC_010334.1 KEGG: sbl:Sbal_1657 hypothetical protein; hypothetical protein 3271837 5906294 Shal_2698 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674910.1 3271436 D 458817 CDS YP_001674911.1 167624617 5906411 3272550..3273926 1 NC_010334.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pde:Pden_3115 protein of unknown function DUF21; hypothetical protein 3273926 5906411 Shal_2699 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674911.1 3272550 D 458817 CDS YP_001674912.1 167624618 5906412 3273923..3274939 1 NC_010334.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: pde:Pden_3114 protein of unknown function DUF21; hypothetical protein 3274939 5906412 Shal_2700 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674912.1 3273923 D 458817 CDS YP_001674913.1 167624619 5906547 3275294..3275953 1 NC_010334.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: cps:CPS_3020 hypothetical protein; 60 kDa inner membrane insertion protein 3275953 5906547 Shal_2701 Shewanella halifaxensis HAW-EB4 60 kDa inner membrane insertion protein YP_001674913.1 3275294 D 458817 CDS YP_001674914.1 167624620 5906548 complement(3276380..3277636) 1 NC_010334.1 PFAM: peptidase M23B; Opacity-associated protein A; KEGG: slo:Shew_2455 peptidase M23B; peptidase M23B 3277636 5906548 Shal_2702 Shewanella halifaxensis HAW-EB4 peptidase M23B YP_001674914.1 3276380 R 458817 CDS YP_001674915.1 167624621 5906736 complement(3277897..3280953) 1 NC_010334.1 PFAM: SMC domain protein; KEGG: shm:Shewmr7_2519 SMC domain protein; SMC domain-containing protein 3280953 5906736 Shal_2703 Shewanella halifaxensis HAW-EB4 SMC domain-containing protein YP_001674915.1 3277897 R 458817 CDS YP_001674916.1 167624622 5906737 complement(3280950..3282095) 1 NC_010334.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: sbl:Sbal_1654 nuclease SbcCD, D subunit; nuclease SbcCD subunit D 3282095 5906737 Shal_2704 Shewanella halifaxensis HAW-EB4 nuclease SbcCD subunit D YP_001674916.1 3280950 R 458817 CDS YP_001674917.1 167624623 5906749 3282450..3283694 1 NC_010334.1 transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase 3283694 avtA 5906749 avtA Shewanella halifaxensis HAW-EB4 valine--pyruvate transaminase YP_001674917.1 3282450 D 458817 CDS YP_001674918.1 167624624 5906750 complement(3283908..3285086) 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_3526 putative transport; hypothetical protein 3285086 5906750 Shal_2706 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674918.1 3283908 R 458817 CDS YP_001674919.1 167624625 5906825 complement(3285666..3286220) 1 NC_010334.1 KEGG: kpn:KPN_pKPN3p05879 hypothetical protein; hypothetical protein 3286220 5906825 Shal_2707 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674919.1 3285666 R 458817 CDS YP_001674920.1 167624626 5906826 3286801..3288315 1 NC_010334.1 PFAM: amino acid permease-associated region; KEGG: yen:YE3692 putative amino acid permease; amino acid permease 3288315 5906826 Shal_2708 Shewanella halifaxensis HAW-EB4 amino acid permease YP_001674920.1 3286801 D 458817 CDS YP_001674921.1 167624627 5906960 3288335..3289270 1 NC_010334.1 catalyzes the formation of glutamate from glutamine; glutaminase 3289270 5906960 Shal_2709 Shewanella halifaxensis HAW-EB4 glutaminase YP_001674921.1 3288335 D 458817 CDS YP_001674922.1 167624628 5906961 complement(3289469..3290326) 1 NC_010334.1 PFAM: penicillin-binding protein transpeptidase; KEGG: syn:slr0319 beta-lactamase; beta-lactamase 3290326 5906961 Shal_2710 Shewanella halifaxensis HAW-EB4 beta-lactamase YP_001674922.1 3289469 R 458817 CDS YP_001674923.1 167624629 5902688 complement(3290354..3291133) 1 NC_010334.1 PFAM: protein of unknown function DUF81; KEGG: pin:Ping_1433 permease with 5 transmembrane domains; hypothetical protein 3291133 5902688 Shal_2711 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674923.1 3290354 R 458817 CDS YP_001674924.1 167624630 5902689 3291254..3292144 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_2570 transcriptional regulator, LysR family; LysR family transcriptional regulator 3292144 5902689 Shal_2712 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001674924.1 3291254 D 458817 CDS YP_001674925.1 167624631 5906044 complement(3292187..3294160) 1 NC_010334.1 PFAM: NERD domain protein; KEGG: slo:Shew_2466 hypothetical protein; serine/threonine protein kinase 3294160 5906044 Shal_2713 Shewanella halifaxensis HAW-EB4 serine/threonine protein kinase YP_001674925.1 3292187 R 458817 CDS YP_001674926.1 167624632 5906045 complement(3294277..3294663) 1 NC_010334.1 PFAM: protein of unknown function DUF1260; KEGG: slo:Shew_2467 protein of unknown function DUF1260; hypothetical protein 3294663 5906045 Shal_2714 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674926.1 3294277 R 458817 CDS YP_001674927.1 167624633 5902782 complement(3294683..3294913) 1 NC_010334.1 PFAM: RNA-binding S4 domain protein; KEGG: sbm:Shew185_1635 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 3294913 5902782 Shal_2715 Shewanella halifaxensis HAW-EB4 RNA-binding S4 domain-containing protein YP_001674927.1 3294683 R 458817 CDS YP_001674928.1 167624634 5902783 complement(3294992..3295525) 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_2469 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3295525 5902783 Shal_2716 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001674928.1 3294992 R 458817 CDS YP_001674929.1 167624635 5903117 complement(3295559..3295837) 1 NC_010334.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: slo:Shew_2470 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3295837 5903117 Shal_2717 Shewanella halifaxensis HAW-EB4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001674929.1 3295559 R 458817 CDS YP_001674930.1 167624636 5903118 complement(3295970..3297802) 1 NC_010334.1 PFAM: protein of unknown function DUF885; KEGG: slo:Shew_2471 protein of unknown function DUF885; hypothetical protein 3297802 5903118 Shal_2718 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674930.1 3295970 R 458817 CDS YP_001674931.1 167624637 5903164 3297879..3298385 1 NC_010334.1 PFAM: GGDEF domain containing protein; KEGG: slo:Shew_2472 diguanylate cyclase; diguanylate cyclase 3298385 5903164 Shal_2719 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001674931.1 3297879 D 458817 CDS YP_001674932.1 167624638 5903165 complement(3298459..3299706) 1 NC_010334.1 SMART: Tetratricopeptide domain protein; KEGG: sfr:Sfri_2621 tetratricopeptide domain protein; tetratricopeptide domain-containing protein 3299706 5903165 Shal_2720 Shewanella halifaxensis HAW-EB4 tetratricopeptide domain-containing protein YP_001674932.1 3298459 R 458817 CDS YP_001674933.1 167624639 5906599 complement(3299709..3300329) 1 NC_010334.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: sbm:Shew185_1629 TonB family protein; TonB family protein 3300329 5906599 Shal_2721 Shewanella halifaxensis HAW-EB4 TonB family protein YP_001674933.1 3299709 R 458817 CDS YP_001674934.1 167624640 5906600 complement(3300331..3300735) 1 NC_010334.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sbm:Shew185_1628 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 3300735 5906600 Shal_2722 Shewanella halifaxensis HAW-EB4 biopolymer transport protein ExbD/TolR YP_001674934.1 3300331 R 458817 CDS YP_001674935.1 167624641 5906895 complement(3300749..3301231) 1 NC_010334.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: sbm:Shew185_1627 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 3301231 5906895 Shal_2723 Shewanella halifaxensis HAW-EB4 MotA/TolQ/ExbB proton channel YP_001674935.1 3300749 R 458817 CDS YP_001674936.1 167624642 5906896 complement(3301273..3302628) 1 NC_010334.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: shn:Shewana3_2625 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 3302628 5906896 Shal_2724 Shewanella halifaxensis HAW-EB4 MotA/TolQ/ExbB proton channel YP_001674936.1 3301273 R 458817 CDS YP_001674937.1 167624643 5903113 complement(3302628..3303410) 1 NC_010334.1 KEGG: saz:Sama_1254 hypothetical protein; hypothetical protein 3303410 5903113 Shal_2725 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674937.1 3302628 R 458817 CDS YP_001674938.1 167624644 5903114 3304304..3304528 1 NC_010334.1 KEGG: sbm:Shew185_4156 transposase IS4 family protein; hypothetical protein 3304528 5903114 Shal_2726 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674938.1 3304304 D 458817 CDS YP_001674939.1 167624645 5905569 complement(3304889..3307738) 1 NC_010334.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2427 TonB-dependent receptor, plug; TonB-dependent receptor 3307738 5905569 Shal_2727 Shewanella halifaxensis HAW-EB4 TonB-dependent receptor YP_001674939.1 3304889 R 458817 CDS YP_001674940.1 167624646 5905570 complement(3308562..3309776) 1 NC_010334.1 PFAM: porin Gram-negative type; KEGG: slo:Shew_2481 porin, gram-negative type; porin 3309776 5905570 Shal_2728 Shewanella halifaxensis HAW-EB4 porin YP_001674940.1 3308562 R 458817 CDS YP_001674941.1 167624647 5905638 complement(3310011..3312452) 1 NC_010334.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95oC; DNA polymerase II 3312452 5905638 Shal_2729 Shewanella halifaxensis HAW-EB4 DNA polymerase II YP_001674941.1 3310011 R 458817 CDS YP_001674942.1 167624648 5905639 3312553..3314625 1 NC_010334.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 3314625 dinG 5905639 dinG Shewanella halifaxensis HAW-EB4 ATP-dependent DNA helicase DinG YP_001674942.1 3312553 D 458817 CDS YP_001674943.1 167624649 5902884 3314634..3315407 1 NC_010334.1 PFAM: protein of unknown function DUF81; KEGG: slo:Shew_2484 protein of unknown function DUF81; hypothetical protein 3315407 5902884 Shal_2731 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674943.1 3314634 D 458817 CDS YP_001674944.1 167624650 5902885 3315404..3316066 1 NC_010334.1 KEGG: slo:Shew_2485 primosomal replication protein N'', putative; primosomal replication protein N'' 3316066 5902885 Shal_2732 Shewanella halifaxensis HAW-EB4 primosomal replication protein N'' YP_001674944.1 3315404 D 458817 CDS YP_001674945.1 167624651 5905659 3316076..3316786 1 NC_010334.1 KEGG: sbm:Shew185_1615 hypothetical protein; hypothetical protein 3316786 5905659 Shal_2733 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674945.1 3316076 D 458817 CDS YP_001674946.1 167624652 5905660 3317177..3317434 1 NC_010334.1 KEGG: shn:Shewana3_2635 hypothetical protein; hypothetical protein 3317434 5905660 Shal_2734 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674946.1 3317177 D 458817 CDS YP_001674947.1 167624653 5905577 complement(3317648..3318583) 1 NC_010334.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ppr:PBPRA2526 hypothetical protein similar to lipase; alpha/beta hydrolase domain-containing protein 3318583 5905577 Shal_2735 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase domain-containing protein YP_001674947.1 3317648 R 458817 CDS YP_001674948.1 167624654 5905578 complement(3318596..3319798) 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_3168 major facilitator superfamily MFS_1; major facilitator transporter 3319798 5905578 Shal_2736 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001674948.1 3318596 R 458817 CDS YP_001674949.1 167624655 5905538 complement(3320048..3322198) 1 NC_010334.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 3322198 5905538 Shal_2737 Shewanella halifaxensis HAW-EB4 phosphate acetyltransferase YP_001674949.1 3320048 R 458817 CDS YP_001674950.1 167624656 5905539 complement(3322284..3323492) 1 NC_010334.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 3323492 5905539 Shal_2738 Shewanella halifaxensis HAW-EB4 acetate kinase YP_001674950.1 3322284 R 458817 CDS YP_001674951.1 167624657 5904493 complement(3323684..3324883) 1 NC_010334.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 3324883 5904493 Shal_2739 Shewanella halifaxensis HAW-EB4 trans-2-enoyl-CoA reductase YP_001674951.1 3323684 R 458817 CDS YP_001674952.1 167624658 5904494 complement(3324907..3325326) 1 NC_010334.1 PFAM: MaoC domain protein dehydratase; KEGG: cbe:Cbei_3349 MaoC domain protein dehydratase; dehydratase 3325326 5904494 Shal_2740 Shewanella halifaxensis HAW-EB4 dehydratase YP_001674952.1 3324907 R 458817 CDS YP_001674953.1 167624659 5902713 complement(3325354..3326946) 1 NC_010334.1 PFAM: coenzyme A transferase; KEGG: amt:Amet_4532 coenzyme A transferase; coenzyme A transferase 3326946 5902713 Shal_2741 Shewanella halifaxensis HAW-EB4 coenzyme A transferase YP_001674953.1 3325354 R 458817 CDS YP_001674954.1 167624660 5902714 complement(3327337..3328662) 1 NC_010334.1 hypothetical protein 3328662 5902714 Shal_2742 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674954.1 3327337 R 458817 CDS YP_001674955.1 167624661 5905144 complement(3328717..3329823) 1 NC_010334.1 PFAM: lipase class 2; KEGG: mxa:MXAN_0221 lipase; lipase class 2 3329823 5905144 Shal_2743 Shewanella halifaxensis HAW-EB4 lipase class 2 YP_001674955.1 3328717 R 458817 CDS YP_001674956.1 167624662 5905145 3329999..3330883 1 NC_010334.1 PFAM: alpha/beta hydrolase fold; KEGG: btk:BT9727_3084 3-Oxoadipate enol-lactonase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold protein 3330883 5905145 Shal_2744 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase fold protein YP_001674956.1 3329999 D 458817 CDS YP_001674957.1 167624663 5902756 3330901..3332457 1 NC_010334.1 PFAM: alpha/beta hydrolase fold; KEGG: xau:Xaut_0180 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3332457 5902756 Shal_2745 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase fold protein YP_001674957.1 3330901 D 458817 CDS YP_001674958.1 167624664 5902757 complement(3332616..3333566) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppr:PBPRB1563 hypothetical transcription regulator; LysR family transcriptional regulator 3333566 5902757 Shal_2746 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001674958.1 3332616 R 458817 CDS YP_001674959.1 167624665 5905134 3333843..3334577 1 NC_010334.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ppr:PBPRB1562 hypothetical 3-oxoacyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR 3334577 5905134 Shal_2747 Shewanella halifaxensis HAW-EB4 short-chain dehydrogenase/reductase SDR YP_001674959.1 3333843 D 458817 CDS YP_001674960.1 167624666 5905135 3334660..3335865 1 NC_010334.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 3335865 5905135 Shal_2748 Shewanella halifaxensis HAW-EB4 acetyl-CoA acetyltransferase YP_001674960.1 3334660 D 458817 CDS YP_001674961.1 167624667 5905096 complement(3337020..3337334) 1 NC_010334.1 KEGG: slo:Shew_2489 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; helix-hairpin-helix repeat-containing competence protein ComEA 3337334 5905096 Shal_2749 Shewanella halifaxensis HAW-EB4 helix-hairpin-helix repeat-containing competence protein ComEA YP_001674961.1 3337020 R 458817 CDS YP_001674962.1 167624668 5905012 3337710..3339116 1 NC_010334.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: slo:Shew_2490 anion transporter; anion transporter 3339116 5905012 Shal_2750 Shewanella halifaxensis HAW-EB4 anion transporter YP_001674962.1 3337710 D 458817 CDS YP_001674963.1 167624669 5904959 complement(3339181..3340377) 1 NC_010334.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: saz:Sama_1242 methionine gamma-lyase; cystathionine gamma-synthase 3340377 5904959 Shal_2751 Shewanella halifaxensis HAW-EB4 cystathionine gamma-synthase YP_001674963.1 3339181 R 458817 CDS YP_001674964.1 167624670 5904960 complement(3340706..3341821) 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: shm:Shewmr7_2546 conserved hypothetical protein 1620; hypothetical protein 3341821 5904960 Shal_2752 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674964.1 3340706 R 458817 CDS YP_001674965.1 167624671 5904986 complement(3341866..3343311) 1 NC_010334.1 PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: slo:Shew_2493 protein of unknown function DUF463, YcjX family protein; hypothetical protein 3343311 5904986 Shal_2753 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674965.1 3341866 R 458817 CDS YP_001674966.1 167624672 5904987 complement(3343403..3343795) 1 NC_010334.1 TIGRFAM: shock protein C; PFAM: PspC domain protein; KEGG: slo:Shew_2494 phage shock protein C, PspC; phage shock protein C 3343795 5904987 Shal_2754 Shewanella halifaxensis HAW-EB4 phage shock protein C YP_001674966.1 3343403 R 458817 CDS YP_001674967.1 167624673 5904992 complement(3343861..3344088) 1 NC_010334.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 3344088 pspB 5904992 pspB Shewanella halifaxensis HAW-EB4 phage shock protein B YP_001674967.1 3343861 R 458817 CDS YP_001674968.1 167624674 5904993 complement(3344117..3344794) 1 NC_010334.1 TIGRFAM: shock protein A; PFAM: PspA/IM30 family protein; KEGG: slo:Shew_2496 phage shock protein A, PspA; phage shock protein A 3344794 5904993 Shal_2756 Shewanella halifaxensis HAW-EB4 phage shock protein A YP_001674968.1 3344117 R 458817 CDS YP_001674969.1 167624675 5904840 3344972..3346048 1 NC_010334.1 KEGG: slo:Shew_2497 sigma54 specific transcriptional regulator, fis family; TIGRFAM: Transcriptional activator PspF; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Fis family transcriptional regulator 3346048 5904840 Shal_2757 Shewanella halifaxensis HAW-EB4 Fis family transcriptional regulator YP_001674969.1 3344972 D 458817 CDS YP_001674970.1 167624676 5904841 3346113..3347741 1 NC_010334.1 PFAM: extracellular solute-binding protein family 5; KEGG: shm:Shewmr7_2552 extracellular solute-binding protein, family 5; extracellular solute-binding protein 3347741 5904841 Shal_2758 Shewanella halifaxensis HAW-EB4 extracellular solute-binding protein YP_001674970.1 3346113 D 458817 CDS YP_001674971.1 167624677 5903099 3347741..3348772 1 NC_010334.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_2499 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3348772 5903099 Shal_2759 Shewanella halifaxensis HAW-EB4 binding-protein-dependent transport system inner membrane protein YP_001674971.1 3347741 D 458817 CDS YP_001674972.1 167624678 5903100 3348759..3349649 1 NC_010334.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_2500 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3349649 5903100 Shal_2760 Shewanella halifaxensis HAW-EB4 binding-protein-dependent transport system inner membrane protein YP_001674972.1 3348759 D 458817 CDS YP_001674973.1 167624679 5903107 3349654..3350661 1 NC_010334.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: shm:Shewmr7_2555 oligopeptide/dipeptide ABC transporter, ATPase subunit; oligopeptide/dipeptide ABC transporter ATPase 3350661 5903107 Shal_2761 Shewanella halifaxensis HAW-EB4 oligopeptide/dipeptide ABC transporter ATPase YP_001674973.1 3349654 D 458817 CDS YP_001674974.1 167624680 5903108 3350642..3351427 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_2556 ABC transporter related; ABC transporter-like protein 3351427 5903108 Shal_2762 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001674974.1 3350642 D 458817 CDS YP_001674975.1 167624681 5903143 3351608..3352810 1 NC_010334.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 3352810 5903143 Shal_2763 Shewanella halifaxensis HAW-EB4 trans-2-enoyl-CoA reductase YP_001674975.1 3351608 D 458817 CDS YP_001674976.1 167624682 5903144 complement(3353174..3355039) 1 NC_010334.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: slo:Shew_2504 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3355039 5903144 Shal_2764 Shewanella halifaxensis HAW-EB4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001674976.1 3353174 R 458817 CDS YP_001674977.1 167624683 5903027 complement(3355258..3355530) 1 NC_010334.1 PFAM: histone family protein DNA-binding protein; KEGG: slo:Shew_2505 histone family protein DNA-binding protein; histone family protein DNA-binding protein 3355530 5903027 Shal_2765 Shewanella halifaxensis HAW-EB4 histone family protein DNA-binding protein YP_001674977.1 3355258 R 458817 CDS YP_001674978.1 167624684 5903028 complement(3355788..3358145) 1 NC_010334.1 KEGG: slo:Shew_2506 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 3358145 5903028 Shal_2766 Shewanella halifaxensis HAW-EB4 ATP-dependent protease La YP_001674978.1 3355788 R 458817 CDS YP_001674979.1 167624685 5902903 complement(3358293..3359570) 1 NC_010334.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 3359570 clpX 5902903 clpX Shewanella halifaxensis HAW-EB4 ATP-dependent protease ATP-binding subunit ClpX YP_001674979.1 3358293 R 458817 CDS YP_001674980.1 167624686 5902904 complement(3359655..3360266) 1 NC_010334.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 3360266 clpP 5902904 clpP Shewanella halifaxensis HAW-EB4 ATP-dependent Clp protease proteolytic subunit YP_001674980.1 3359655 R 458817 CDS YP_001674981.1 167624687 5903210 complement(3360357..3361661) 1 NC_010334.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 3361661 tig 5903210 tig Shewanella halifaxensis HAW-EB4 trigger factor YP_001674981.1 3360357 R 458817 CDS YP_001674982.1 167624688 5902881 3362591..3363445 1 NC_010334.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3363445 5902881 Shal_2770 Shewanella halifaxensis HAW-EB4 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001674982.1 3362591 D 458817 CDS YP_001674983.1 167624689 5903081 complement(3363701..3365080) 1 NC_010334.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 3365080 cysS 5903081 cysS Shewanella halifaxensis HAW-EB4 cysteinyl-tRNA synthetase YP_001674983.1 3363701 R 458817 CDS YP_001674984.1 167624690 5903082 3365364..3365876 1 NC_010334.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: slo:Shew_2512 peptidylprolyl isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 3365876 5903082 Shal_2772 Shewanella halifaxensis HAW-EB4 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001674984.1 3365364 D 458817 CDS YP_001674985.1 167624691 5902754 3365887..3366603 1 NC_010334.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 3366603 5902754 Shal_2773 Shewanella halifaxensis HAW-EB4 UDP-2,3-diacylglucosamine hydrolase YP_001674985.1 3365887 D 458817 CDS YP_001674986.1 167624692 5902755 3367016..3367612 1 NC_010334.1 PFAM: protein of unknown function DUF1282; KEGG: sbl:Sbal_1597 protein of unknown function DUF1282; hypothetical protein 3367612 5902755 Shal_2774 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674986.1 3367016 D 458817 CDS YP_001674987.1 167624693 5903006 complement(3367730..3369400) 1 NC_010334.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 3369400 5903006 Shal_2775 Shewanella halifaxensis HAW-EB4 glutaminyl-tRNA synthetase YP_001674987.1 3367730 R 458817 CDS YP_001674988.1 167624694 5903007 complement(3369573..3371867) 1 NC_010334.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: slo:Shew_2517 ferrous iron transport protein B; ferrous iron transport protein B 3371867 5903007 Shal_2776 Shewanella halifaxensis HAW-EB4 ferrous iron transport protein B YP_001674988.1 3369573 R 458817 CDS YP_001674989.1 167624695 5902807 complement(3371860..3372099) 1 NC_010334.1 PFAM: FeoA family protein; KEGG: shw:Sputw3181_2621 FeoA family protein; FeoA family protein 3372099 5902807 Shal_2777 Shewanella halifaxensis HAW-EB4 FeoA family protein YP_001674989.1 3371860 R 458817 CDS YP_001674990.1 167624696 5902808 3372541..3373503 1 NC_010334.1 TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: slo:Shew_2519 cytochrome c family protein; cytochrome C family protein 3373503 5902808 Shal_2778 Shewanella halifaxensis HAW-EB4 cytochrome C family protein YP_001674990.1 3372541 D 458817 CDS YP_001674991.1 167624697 5902673 3373519..3375639 1 NC_010334.1 KEGG: slo:Shew_2520 outer membrane protein, putative; outer membrane protein 3375639 5902673 Shal_2779 Shewanella halifaxensis HAW-EB4 outer membrane protein YP_001674991.1 3373519 D 458817 CDS YP_001674992.1 167624698 5902674 3375769..3377694 1 NC_010334.1 KEGG: slo:Shew_2521 decaheme cytochrome c MtrF; decaheme cytochrome c MtrF 3377694 5902674 Shal_2780 Shewanella halifaxensis HAW-EB4 decaheme cytochrome c MtrF YP_001674992.1 3375769 D 458817 CDS YP_001674993.1 167624699 5902825 3377799..3379982 1 NC_010334.1 KEGG: slo:Shew_2522 decaheme cytochrome c; decaheme cytochrome c 3379982 5902825 Shal_2781 Shewanella halifaxensis HAW-EB4 decaheme cytochrome c YP_001674993.1 3377799 D 458817 CDS YP_001674994.1 167624700 5902826 3380518..3382986 1 NC_010334.1 KEGG: spc:Sputcn32_1479 hypothetical protein; hypothetical protein 3382986 5902826 Shal_2782 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674994.1 3380518 D 458817 CDS YP_001674995.1 167624701 5903071 3383437..3385617 1 NC_010334.1 KEGG: slo:Shew_2524 decaheme cytochrome c; hypothetical protein 3385617 5903071 Shal_2783 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674995.1 3383437 D 458817 CDS YP_001674996.1 167624702 5903072 3385992..3388028 1 NC_010334.1 KEGG: sfr:Sfri_2637 decaheme cytochrome c; decaheme cytochrome c 3388028 5903072 Shal_2784 Shewanella halifaxensis HAW-EB4 decaheme cytochrome c YP_001674996.1 3385992 D 458817 CDS YP_001674997.1 167624703 5902593 3388144..3389130 1 NC_010334.1 TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: slo:Shew_2526 cytochrome c family protein; cytochrome C family protein 3389130 5902593 Shal_2785 Shewanella halifaxensis HAW-EB4 cytochrome C family protein YP_001674997.1 3388144 D 458817 CDS YP_001674998.1 167624704 5902594 3389144..3391246 1 NC_010334.1 KEGG: slo:Shew_2527 outer membrane protein precursor MtrB; outer membrane protein MtrB 3391246 5902594 Shal_2786 Shewanella halifaxensis HAW-EB4 outer membrane protein MtrB YP_001674998.1 3389144 D 458817 CDS YP_001674999.1 167624705 5902895 3391760..3392338 1 NC_010334.1 KEGG: sbl:Sbal_1586 hypothetical protein; hypothetical protein 3392338 5902895 Shal_2787 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001674999.1 3391760 D 458817 CDS YP_001675000.1 167624706 5902896 3392369..3392974 1 NC_010334.1 KEGG: saz:Sama_1203 hypothetical protein; hypothetical protein 3392974 5902896 Shal_2788 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675000.1 3392369 D 458817 CDS YP_001675001.1 167624707 5902850 3393111..3394271 1 NC_010334.1 PFAM: sugar diacid recognition domain protein; KEGG: slo:Shew_2528 transcriptional regulator, CdaR; transcriptional regulator CdaR 3394271 5902850 Shal_2789 Shewanella halifaxensis HAW-EB4 transcriptional regulator CdaR YP_001675001.1 3393111 D 458817 CDS YP_001675002.1 167624708 5902851 3394275..3394811 1 NC_010334.1 KEGG: vch:VC0502 type IV pilin, putative; type IV pilin 3394811 5902851 Shal_2790 Shewanella halifaxensis HAW-EB4 type IV pilin YP_001675002.1 3394275 D 458817 CDS YP_001675003.1 167624709 5903121 complement(3394896..3395861) 1 NC_010334.1 PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: vpa:VPA0248 putative outer membrane protein OmpA; OmpA/MotB domain-containing protein 3395861 5903121 Shal_2791 Shewanella halifaxensis HAW-EB4 OmpA/MotB domain-containing protein YP_001675003.1 3394896 R 458817 CDS YP_001675004.1 167624710 5903122 complement(3395888..3396979) 1 NC_010334.1 KEGG: vha:VIBHAR_07131 hypothetical protein; hypothetical protein 3396979 5903122 Shal_2792 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675004.1 3395888 R 458817 CDS YP_001675005.1 167624711 5903067 complement(3396981..3397709) 1 NC_010334.1 KEGG: shm:Shewmr7_2311 hypothetical protein; hypothetical protein 3397709 5903067 Shal_2793 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675005.1 3396981 R 458817 CDS YP_001675006.1 167624712 5903068 complement(3397713..3400655) 1 NC_010334.1 KEGG: sbm:Shew185_0590 P pilus assembly protein porin PapC-like protein; P pilus assembly protein porin PapC-like protein 3400655 5903068 Shal_2794 Shewanella halifaxensis HAW-EB4 P pilus assembly protein porin PapC-like protein YP_001675006.1 3397713 R 458817 CDS YP_001675007.1 167624713 5902632 complement(3400652..3401185) 1 NC_010334.1 hypothetical protein 3401185 5902632 Shal_2795 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675007.1 3400652 R 458817 CDS YP_001675008.1 167624714 5902633 complement(3401221..3401799) 1 NC_010334.1 hypothetical protein 3401799 5902633 Shal_2796 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675008.1 3401221 R 458817 CDS YP_001675009.1 167624715 5903139 complement(3402239..3405154) 1 NC_010334.1 KEGG: vha:VIBHAR_05990 hypothetical protein; hypothetical protein 3405154 5903139 Shal_2797 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675009.1 3402239 R 458817 CDS YP_001675010.1 167624716 5903140 complement(3405470..3406411) 1 NC_010334.1 KEGG: vha:VIBHAR_02615 hypothetical protein; hypothetical protein 3406411 5903140 Shal_2798 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675010.1 3405470 R 458817 CDS YP_001675011.1 167624717 5902663 3406705..3408063 1 NC_010334.1 PFAM: Gluconate transporter; Citrate transporter; KEGG: slo:Shew_2533 gluconate transporter; gluconate transporter 3408063 5902663 Shal_2799 Shewanella halifaxensis HAW-EB4 gluconate transporter YP_001675011.1 3406705 D 458817 CDS YP_001675012.1 167624718 5902664 3408190..3409344 1 NC_010334.1 PFAM: glycerate kinase; KEGG: slo:Shew_2534 glycerate kinase; glycerate kinase 3409344 5902664 Shal_2800 Shewanella halifaxensis HAW-EB4 glycerate kinase YP_001675012.1 3408190 D 458817 CDS YP_001675013.1 167624719 5902624 3409605..3411251 1 NC_010334.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: slo:Shew_2535 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase 3411251 5902624 Shal_2801 Shewanella halifaxensis HAW-EB4 pyridoxal-dependent decarboxylase YP_001675013.1 3409605 D 458817 CDS YP_001675014.1 167624720 5902625 complement(3411282..3411938) 1 NC_010334.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_2370 methyltransferase type 11; type 12 methyltransferase 3411938 5902625 Shal_2802 Shewanella halifaxensis HAW-EB4 type 12 methyltransferase YP_001675014.1 3411282 R 458817 CDS YP_001675015.1 167624721 5902697 3412876..3413853 1 NC_010334.1 KEGG: tdn:Tmden_0652 hypothetical protein; hypothetical protein 3413853 5902697 Shal_2804 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675015.1 3412876 D 458817 CDS YP_001675016.1 167624722 5902939 3413878..3414876 1 NC_010334.1 hypothetical protein 3414876 5902939 Shal_2805 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675016.1 3413878 D 458817 CDS YP_001675017.1 167624723 5902940 3414849..3415478 1 NC_010334.1 KEGG: mmw:Mmwyl1_1032 hypothetical protein; hypothetical protein 3415478 5902940 Shal_2806 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675017.1 3414849 D 458817 CDS YP_001675018.1 167624724 5902854 3415540..3417087 1 NC_010334.1 PFAM: Lytic transglycosylase catalytic; KEGG: pha:PSHAb0242 putative transglycosylase; lytic transglycosylase 3417087 5902854 Shal_2807 Shewanella halifaxensis HAW-EB4 lytic transglycosylase YP_001675018.1 3415540 D 458817 CDS YP_001675019.1 167624725 5902855 3417108..3417278 1 NC_010334.1 KEGG: vfi:VFA0327 hypothetical protein; hypothetical protein 3417278 5902855 Shal_2808 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675019.1 3417108 D 458817 CDS YP_001675020.1 167624726 5903123 3417281..3418018 1 NC_010334.1 KEGG: pha:PSHAb0243 putative orphan protein; hypothetical protein 3418018 5903123 Shal_2809 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675020.1 3417281 D 458817 CDS YP_001675021.1 167624727 5903124 complement(3418187..3419920) 1 NC_010334.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: son:SO_1755 phosphoglucomutase/phosphomannomutase family protein; phosphoglucomutase/phosphomannomutase subunit alpha/beta 3419920 5903124 Shal_2810 Shewanella halifaxensis HAW-EB4 phosphoglucomutase/phosphomannomutase subunit alpha/beta YP_001675021.1 3418187 R 458817 CDS YP_001675022.1 167624728 5902640 3420204..3421049 1 NC_010334.1 PFAM: pseudouridine synthase; KEGG: sfr:Sfri_0787 pseudouridine synthase; pseudouridine synthase 3421049 5902640 Shal_2811 Shewanella halifaxensis HAW-EB4 pseudouridine synthase YP_001675022.1 3420204 D 458817 CDS YP_001675023.1 167624729 5902641 complement(3421140..3421880) 1 NC_010334.1 PFAM: cytochrome B561; KEGG: slo:Shew_2692 cytochrome b561; cytochrome B561 3421880 5902641 Shal_2812 Shewanella halifaxensis HAW-EB4 cytochrome B561 YP_001675023.1 3421140 R 458817 CDS YP_001675024.1 167624730 5903784 complement(3422047..3422712) 1 NC_010334.1 PFAM: Glutathione S-transferase domain; KEGG: sfr:Sfri_2500 glutathione S-transferase, C-terminal domain protein; glutathione S-transferase domain-containing protein 3422712 5903784 Shal_2813 Shewanella halifaxensis HAW-EB4 glutathione S-transferase domain-containing protein YP_001675024.1 3422047 R 458817 CDS YP_001675025.1 167624731 5903785 3422971..3423819 1 NC_010334.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sfr:Sfri_2100 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 3423819 5903785 Shal_2814 Shewanella halifaxensis HAW-EB4 mechanosensitive ion channel protein MscS YP_001675025.1 3422971 D 458817 CDS YP_001675026.1 167624732 5903353 complement(3423906..3424127) 1 NC_010334.1 KEGG: rxy:Rxyl_2652 hypothetical protein; hypothetical protein 3424127 5903353 Shal_2815 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675026.1 3423906 R 458817 CDS YP_001675027.1 167624733 5903354 complement(3424166..3424609) 1 NC_010334.1 KEGG: saz:Sama_1098 hypothetical protein; hypothetical protein 3424609 5903354 Shal_2816 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675027.1 3424166 R 458817 CDS YP_001675028.1 167624734 5904351 complement(3424895..3425998) 1 NC_010334.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ppr:PBPRA1465 steroid dehydrogenase; 3-beta hydroxysteroid dehydrogenase/isomerase 3425998 5904351 Shal_2817 Shewanella halifaxensis HAW-EB4 3-beta hydroxysteroid dehydrogenase/isomerase YP_001675028.1 3424895 R 458817 CDS YP_001675029.1 167624735 5904352 complement(3426005..3427726) 1 NC_010334.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 3427726 5904352 Shal_2818 Shewanella halifaxensis HAW-EB4 peptide synthase YP_001675029.1 3426005 R 458817 CDS YP_001675030.1 167624736 5904467 complement(3427732..3428637) 1 NC_010334.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO_1743 hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold protein 3428637 5904467 Shal_2819 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase fold protein YP_001675030.1 3427732 R 458817 CDS YP_001675031.1 167624737 5904468 complement(3428767..3429816) 1 NC_010334.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 3429816 5904468 Shal_2820 Shewanella halifaxensis HAW-EB4 3-oxoacyl-ACP synthase YP_001675031.1 3428767 R 458817 CDS YP_001675032.1 167624738 5904495 complement(3430076..3431404) 1 NC_010334.1 KEGG: spc:Sputcn32_1444 hypothetical protein; hypothetical protein 3431404 5904495 Shal_2821 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675032.1 3430076 R 458817 CDS YP_001675033.1 167624739 5904496 complement(3431496..3432674) 1 NC_010334.1 KEGG: slo:Shew_1711 conserved hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 3432674 5904496 Shal_2822 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis protein YP_001675033.1 3431496 R 458817 CDS YP_001675034.1 167624740 5904544 3433055..3433297 1 NC_010334.1 PFAM: protein of unknown function DUF1289; KEGG: sfr:Sfri_1363 protein of unknown function DUF1289; hypothetical protein 3433297 5904544 Shal_2823 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675034.1 3433055 D 458817 CDS YP_001675035.1 167624741 5904545 complement(3433404..3433778) 1 NC_010334.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: slo:Shew_1709 HNH nuclease; hypothetical protein 3433778 5904545 Shal_2824 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675035.1 3433404 R 458817 CDS YP_001675036.1 167624742 5903202 complement(3433847..3435823) 1 NC_010334.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: shw:Sputw3181_2658 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter 3435823 5903202 Shal_2825 Shewanella halifaxensis HAW-EB4 choline/carnitine/betaine transporter YP_001675036.1 3433847 R 458817 CDS YP_001675037.1 167624743 5903203 complement(3436403..3437113) 1 NC_010334.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 3437113 5903203 Shal_2826 Shewanella halifaxensis HAW-EB4 transcriptional regulator PhoU YP_001675037.1 3436403 R 458817 CDS YP_001675038.1 167624744 5903309 complement(3437135..3437953) 1 NC_010334.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 3437953 5903309 Shal_2827 Shewanella halifaxensis HAW-EB4 phosphate transporter ATP-binding protein YP_001675038.1 3437135 R 458817 CDS YP_001675039.1 167624745 5903310 complement(3437985..3439637) 1 NC_010334.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_1699 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease 3439637 5903310 Shal_2828 Shewanella halifaxensis HAW-EB4 phosphate ABC transporter permease YP_001675039.1 3437985 R 458817 CDS YP_001675040.1 167624746 5904660 complement(3439725..3441980) 1 NC_010334.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_1698 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3441980 5904660 Shal_2829 Shewanella halifaxensis HAW-EB4 binding-protein-dependent transport system inner membrane protein YP_001675040.1 3439725 R 458817 CDS YP_001675041.1 167624747 5904661 3442242..3442742 1 NC_010334.1 PFAM: amino acid-binding ACT domain protein; KEGG: slo:Shew_1697 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 3442742 5904661 Shal_2830 Shewanella halifaxensis HAW-EB4 amino acid-binding ACT domain-containing protein YP_001675041.1 3442242 D 458817 CDS YP_001675042.1 167624748 5904831 complement(3443029..3443628) 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: nis:NIS_1660 signal transduction response regulator; diguanylate cyclase 3443628 5904831 Shal_2831 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001675042.1 3443029 R 458817 CDS YP_001675043.1 167624749 5902952 complement(3444235..3445455) 1 NC_010334.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 3445455 5902952 Shal_2833 Shewanella halifaxensis HAW-EB4 alanine racemase YP_001675043.1 3444235 R 458817 CDS YP_001675044.1 167624750 5902953 complement(3446008..3446667) 1 NC_010334.1 PFAM: regulatory protein TetR; KEGG: asa:ASA_3408 transcriptional regulator, TetR family; TetR family transcriptional regulator 3446667 5902953 Shal_2834 Shewanella halifaxensis HAW-EB4 TetR family transcriptional regulator YP_001675044.1 3446008 R 458817 CDS YP_001675045.1 167624751 5903101 3447060..3448460 1 NC_010334.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: aha:AHA_0949 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 3448460 5903101 Shal_2835 Shewanella halifaxensis HAW-EB4 xanthine/uracil/vitamin C permease YP_001675045.1 3447060 D 458817 CDS YP_001675046.1 167624752 5903102 3448473..3450236 1 NC_010334.1 catalyzes the formation of hypoxanthine from adenine; in E. coli this activity has been detected in mutant strains but not in wild type; cryptic adenine deaminase 3450236 5903102 Shal_2836 Shewanella halifaxensis HAW-EB4 cryptic adenine deaminase YP_001675046.1 3448473 D 458817 CDS YP_001675047.1 167624753 5902750 3450980..3451798 1 NC_010334.1 KEGG: she:Shewmr4_2564 hypothetical protein; hypothetical protein 3451798 5902750 Shal_2837 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675047.1 3450980 D 458817 CDS YP_001675048.1 167624754 5902751 complement(3451989..3452408) 1 NC_010334.1 KEGG: saz:Sama_1395 hypothetical protein; hypothetical protein 3452408 5902751 Shal_2838 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675048.1 3451989 R 458817 CDS YP_001675049.1 167624755 5902628 complement(3452495..3453067) 1 NC_010334.1 KEGG: shn:Shewana3_2741 hypothetical protein; hypothetical protein 3453067 5902628 Shal_2839 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675049.1 3452495 R 458817 CDS YP_001675050.1 167624756 5902629 complement(3453255..3456185) 1 NC_010334.1 PFAM: Thrombospondin type 3 repeat; peptidase domain protein; Peptidase M9A collagenase domain protein; Peptidase M9 domain; KEGG: slo:Shew_1685 microbial collagenase; collagenase 3456185 5902629 Shal_2840 Shewanella halifaxensis HAW-EB4 collagenase YP_001675050.1 3453255 R 458817 CDS YP_001675051.1 167624757 5902699 3456978..3457571 1 NC_010334.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: slo:Shew_1684 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3457571 5902699 Shal_2841 Shewanella halifaxensis HAW-EB4 lysine exporter protein LysE/YggA YP_001675051.1 3456978 D 458817 CDS YP_001675052.1 167624758 5902700 3457592..3458158 1 NC_010334.1 PFAM: protein of unknown function DUF1415; KEGG: shw:Sputw3181_2672 protein of unknown function DUF1415; hypothetical protein 3458158 5902700 Shal_2842 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675052.1 3457592 D 458817 CDS YP_001675053.1 167624759 5902715 3458231..3458995 1 NC_010334.1 PFAM: ribonuclease H; KEGG: sfr:Sfri_3175 ribonuclease H; ribonuclease H 3458995 5902715 Shal_2843 Shewanella halifaxensis HAW-EB4 ribonuclease H YP_001675053.1 3458231 D 458817 CDS YP_001675054.1 167624760 5902716 3459099..3459518 1 NC_010334.1 KEGG: slo:Shew_1678 hypothetical protein; hypothetical protein 3459518 5902716 Shal_2844 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675054.1 3459099 D 458817 CDS YP_001675055.1 167624761 5902703 3459675..3461033 1 NC_010334.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: slo:Shew_1677 leucyl aminopeptidase; leucyl aminopeptidase 3461033 5902703 Shal_2845 Shewanella halifaxensis HAW-EB4 leucyl aminopeptidase YP_001675055.1 3459675 D 458817 CDS YP_001675056.1 167624762 5902704 complement(3461233..3462249) 1 NC_010334.1 PFAM: ApbE family lipoprotein; KEGG: sdn:Sden_0988 ApbE-like lipoprotein; ApbE family lipoprotein 3462249 5902704 Shal_2846 Shewanella halifaxensis HAW-EB4 ApbE family lipoprotein YP_001675056.1 3461233 R 458817 CDS YP_001675057.1 167624763 5902913 complement(3462350..3464104) 1 NC_010334.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO_4620 fumarate reductase, flavoprotein subunit precursor; flavocytochrome c 3464104 5902913 Shal_2847 Shewanella halifaxensis HAW-EB4 flavocytochrome c YP_001675057.1 3462350 R 458817 CDS YP_001675058.1 167624764 5902914 complement(3464133..3464879) 1 NC_010334.1 KEGG: shn:Shewana3_4005 hypothetical protein; hypothetical protein 3464879 5902914 Shal_2848 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675058.1 3464133 R 458817 CDS YP_001675059.1 167624765 5903153 complement(3465311..3466528) 1 NC_010334.1 KEGG: shn:Shewana3_4006 histidine kinase A domain protein domain protein; histidine kinase A domain-containing protein 3466528 5903153 Shal_2849 Shewanella halifaxensis HAW-EB4 histidine kinase A domain-containing protein YP_001675059.1 3465311 R 458817 CDS YP_001675060.1 167624766 5903154 complement(3466519..3467190) 1 NC_010334.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO_4623 DNA-binding response regulator; two component transcriptional regulator 3467190 5903154 Shal_2850 Shewanella halifaxensis HAW-EB4 two component transcriptional regulator YP_001675060.1 3466519 R 458817 CDS YP_001675061.1 167624767 5902852 complement(3467194..3467928) 1 NC_010334.1 PFAM: regulatory protein LuxR; KEGG: son:SO_4624 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 3467928 5902852 Shal_2851 Shewanella halifaxensis HAW-EB4 LuxR family transcriptional regulator YP_001675061.1 3467194 R 458817 CDS YP_001675062.1 167624768 5902853 3468627..3469697 1 NC_010334.1 KEGG: slo:Shew_0274 hypothetical protein; hypothetical protein 3469697 5902853 Shal_2852 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675062.1 3468627 D 458817 CDS YP_001675063.1 167624769 5903145 3470014..3470316 1 NC_010334.1 PFAM: Modulator of Rho-dependent transcription termination; KEGG: vco:VC0395_0290 hypothetical protein; transcriptional antiterminator Rof 3470316 5903145 Shal_2853 Shewanella halifaxensis HAW-EB4 transcriptional antiterminator Rof YP_001675063.1 3470014 D 458817 CDS YP_001675064.1 167624770 5903146 3470566..3471006 1 NC_010334.1 KEGG: tcx:Tcr_1988 hypothetical protein; hypothetical protein 3471006 5903146 Shal_2854 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675064.1 3470566 D 458817 CDS YP_001675065.1 167624771 5903131 complement(3471268..3472476) 1 NC_010334.1 TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: ppr:PBPRB1458 putative NupC family protein (permease); nucleoside transporter 3472476 5903131 Shal_2855 Shewanella halifaxensis HAW-EB4 nucleoside transporter YP_001675065.1 3471268 R 458817 CDS YP_001675066.1 167624772 5903132 complement(3473000..3474091) 1 NC_010334.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: vfi:VFA0483 rod shape-determining protein RodA; rod shape-determining protein RodA 3474091 5903132 Shal_2856 Shewanella halifaxensis HAW-EB4 rod shape-determining protein RodA YP_001675066.1 3473000 R 458817 CDS YP_001675067.1 167624773 5903077 complement(3474508..3475455) 1 NC_010334.1 PFAM: UspA domain protein; KEGG: vch:VCA0159 hypothetical protein; UspA domain-containing protein 3475455 5903077 Shal_2857 Shewanella halifaxensis HAW-EB4 UspA domain-containing protein YP_001675067.1 3474508 R 458817 CDS YP_001675068.1 167624774 5902862 complement(3476618..3476701) 1 NC_010334.1 KEGG: vha:VIBHAR_06882 hypothetical protein; hypothetical protein 3476701 5902862 Shal_2859 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675068.1 3476618 R 458817 CDS YP_001675069.1 167624775 5902863 complement(3477490..3477834) 1 NC_010334.1 KEGG: vvu:VV2_0955 hypothetical protein; hypothetical protein 3477834 5902863 Shal_2860 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675069.1 3477490 R 458817 CDS YP_001675070.1 167624776 5903089 complement(3477859..3479616) 1 NC_010334.1 KEGG: pmy:Pmen_1369 beta-lactamase domain protein; alkyl sulfatase-like protein 3479616 5903089 Shal_2861 Shewanella halifaxensis HAW-EB4 alkyl sulfatase-like protein YP_001675070.1 3477859 R 458817 CDS YP_001675071.1 167624777 5903090 3479787..3480719 1 NC_010334.1 PFAM: regulatory protein LysR; KEGG: vvu:VV2_0953 transcriptional regulator; LysR family transcriptional regulator 3480719 5903090 Shal_2862 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001675071.1 3479787 D 458817 CDS YP_001675072.1 167624778 5903004 3480899..3482023 1 NC_010334.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: syn:sll0644 esterase; alpha/beta hydrolase domain-containing protein 3482023 5903004 Shal_2863 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase domain-containing protein YP_001675072.1 3480899 D 458817 CDS YP_001675073.1 167624779 5903005 complement(3482397..3484037) 1 NC_010334.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: vvu:VV2_1411 predicted membrane-associated metal-dependent hydrolase; sulfatase 3484037 5903005 Shal_2864 Shewanella halifaxensis HAW-EB4 sulfatase YP_001675073.1 3482397 R 458817 CDS YP_001675074.1 167624780 5903470 complement(3484876..3486468) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_1676 ABC transporter-related protein; ABC transporter-like protein 3486468 5903470 Shal_2866 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001675074.1 3484876 R 458817 CDS YP_001675075.1 167624781 5903023 complement(3486769..3489054) 1 NC_010334.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: shn:Shewana3_2761 copper-translocating P-type ATPase; copper-translocating P-type ATPase 3489054 5903023 Shal_2867 Shewanella halifaxensis HAW-EB4 copper-translocating P-type ATPase YP_001675075.1 3486769 R 458817 CDS YP_001675076.1 167624782 5903024 3489177..3489572 1 NC_010334.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: son:SO_1687 transcriptional regulator, MerR family; MerR family transcriptional regulator 3489572 5903024 Shal_2868 Shewanella halifaxensis HAW-EB4 MerR family transcriptional regulator YP_001675076.1 3489177 D 458817 CDS YP_001675077.1 167624783 5903159 complement(3489682..3491715) 1 NC_010334.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sbl:Sbal_1503 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 3491715 5903159 Shal_2869 Shewanella halifaxensis HAW-EB4 peptidase S9 prolyl oligopeptidase YP_001675077.1 3489682 R 458817 CDS YP_001675078.1 167624784 5903160 complement(3491792..3492019) 1 NC_010334.1 KEGG: shm:Shewmr7_2657 hypothetical protein; hypothetical protein 3492019 5903160 Shal_2870 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675078.1 3491792 R 458817 CDS YP_001675079.1 167624785 5902844 complement(3492167..3492277) 1 NC_010334.1 hypothetical protein 3492277 5902844 Shal_2871 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675079.1 3492167 R 458817 CDS YP_001675080.1 167624786 5902845 complement(3492284..3493042) 1 NC_010334.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 3493042 fabG 5902845 fabG Shewanella halifaxensis HAW-EB4 3-ketoacyl-ACP reductase YP_001675080.1 3492284 R 458817 CDS YP_001675081.1 167624787 5902909 complement(3493047..3493976) 1 NC_010334.1 KEGG: slo:Shew_1672 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase 3493976 5902909 Shal_2873 Shewanella halifaxensis HAW-EB4 3-hydroxyisobutyrate dehydrogenase YP_001675081.1 3493047 R 458817 CDS YP_001675082.1 167624788 5902910 complement(3494153..3495355) 1 NC_010334.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: slo:Shew_1671 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3495355 5902910 Shal_2874 Shewanella halifaxensis HAW-EB4 enoyl-CoA hydratase/isomerase YP_001675082.1 3494153 R 458817 CDS YP_001675083.1 167624789 5904658 complement(3495355..3496164) 1 NC_010334.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3496164 5904658 Shal_2875 Shewanella halifaxensis HAW-EB4 enoyl-CoA hydratase YP_001675083.1 3495355 R 458817 CDS YP_001675084.1 167624790 5904659 complement(3496217..3497374) 1 NC_010334.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sbm:Shew185_1491 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3497374 5904659 Shal_2876 Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase domain-containing protein YP_001675084.1 3496217 R 458817 CDS YP_001675085.1 167624791 5903319 complement(3497590..3499089) 1 NC_010334.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: spc:Sputcn32_1398 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 3499089 5903319 Shal_2877 Shewanella halifaxensis HAW-EB4 methylmalonate-semialdehyde dehydrogenase YP_001675085.1 3497590 R 458817 CDS YP_001675086.1 167624792 5903320 complement(3499267..3500457) 1 NC_010334.1 KEGG: sdn:Sden_1943 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 3500457 5903320 Shal_2878 Shewanella halifaxensis HAW-EB4 acetyl-CoA acetyltransferase YP_001675086.1 3499267 R 458817 CDS YP_001675087.1 167624793 5904551 3500955..3501626 1 NC_010334.1 PFAM: regulatory protein LuxR; KEGG: vvu:VV1_2744 response regulator; LuxR family transcriptional regulator 3501626 5904551 Shal_2879 Shewanella halifaxensis HAW-EB4 LuxR family transcriptional regulator YP_001675087.1 3500955 D 458817 CDS YP_001675088.1 167624794 5904552 3501809..3502336 1 NC_010334.1 KEGG: vvy:VV1518 hypothetical protein; hypothetical protein 3502336 5904552 Shal_2880 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675088.1 3501809 D 458817 CDS YP_001675089.1 167624795 5904540 3502402..3503100 1 NC_010334.1 KEGG: vvy:VV1519 P pilus assembly protein, chaperone PapD; P pilus assembly protein, chaperone PapD 3503100 5904540 Shal_2881 Shewanella halifaxensis HAW-EB4 P pilus assembly protein, chaperone PapD YP_001675089.1 3502402 D 458817 CDS YP_001675090.1 167624796 5904541 3503097..3505547 1 NC_010334.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: vvy:VV1520 P pilus assembly protein, porin PapC; fimbrial biogenesis outer membrane usher protein 3505547 5904541 Shal_2882 Shewanella halifaxensis HAW-EB4 fimbrial biogenesis outer membrane usher protein YP_001675090.1 3503097 D 458817 CDS YP_001675091.1 167624797 5904465 3505534..3506433 1 NC_010334.1 KEGG: vvy:VV1521 hypothetical protein; hypothetical protein 3506433 5904465 Shal_2883 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675091.1 3505534 D 458817 CDS YP_001675092.1 167624798 5904466 complement(3506573..3507511) 1 NC_010334.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 3507511 5904466 Shal_2884 Shewanella halifaxensis HAW-EB4 homoserine O-succinyltransferase YP_001675092.1 3506573 R 458817 CDS YP_001675093.1 167624799 5904270 complement(3507588..3507989) 1 NC_010334.1 KEGG: slo:Shew_2552 hypothetical protein; hypothetical protein 3507989 5904270 Shal_2885 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675093.1 3507588 R 458817 CDS YP_001675094.1 167624800 5904271 3508208..3508981 1 NC_010334.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: shw:Sputw3181_2708 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3508981 5904271 Shal_2886 Shewanella halifaxensis HAW-EB4 short-chain dehydrogenase/reductase SDR YP_001675094.1 3508208 D 458817 CDS YP_001675095.1 167624801 5903834 complement(3509064..3509708) 1 NC_010334.1 receptor for colicin S4; outer membrane protein W 3509708 5903834 Shal_2887 Shewanella halifaxensis HAW-EB4 outer membrane protein W YP_001675095.1 3509064 R 458817 CDS YP_001675096.1 167624802 5903835 3510288..3511391 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: shn:Shewana3_0372 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3511391 5903835 Shal_2888 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001675096.1 3510288 D 458817 CDS YP_001675097.1 167624803 5903656 3511401..3514505 1 NC_010334.1 PFAM: acriflavin resistance protein; KEGG: shn:Shewana3_0371 acriflavin resistance protein; acriflavin resistance protein 3514505 5903656 Shal_2889 Shewanella halifaxensis HAW-EB4 acriflavin resistance protein YP_001675097.1 3511401 D 458817 CDS YP_001675098.1 167624804 5903657 complement(3514649..3515593) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VFA0024 transcriptional regulators, LysR family; LysR family transcriptional regulator 3515593 5903657 Shal_2890 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001675098.1 3514649 R 458817 CDS YP_001675099.1 167624805 5903702 3515728..3516552 1 NC_010334.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: vfi:VFA0023 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 3516552 5903702 Shal_2891 Shewanella halifaxensis HAW-EB4 enoyl-CoA hydratase/isomerase YP_001675099.1 3515728 D 458817 CDS YP_001675100.1 167624806 5903703 3516675..3517565 1 NC_010334.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: swo:Swol_0919 oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase; radical SAM domain-containing protein 3517565 5903703 Shal_2892 Shewanella halifaxensis HAW-EB4 radical SAM domain-containing protein YP_001675100.1 3516675 D 458817 CDS YP_001675101.1 167624807 5903418 complement(3517709..3518431) 1 NC_010334.1 hypothetical protein 3518431 5903418 Shal_2893 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675101.1 3517709 R 458817 CDS YP_001675102.1 167624808 5903419 complement(3518576..3519169) 1 NC_010334.1 PFAM: protein of unknown function DUF925; KEGG: shm:Shewmr7_2669 protein of unknown function DUF925; hypothetical protein 3519169 5903419 Shal_2894 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675102.1 3518576 R 458817 CDS YP_001675103.1 167624809 5903198 complement(3519315..3519716) 1 NC_010334.1 KEGG: shn:Shewana3_1689 hypothetical protein; hypothetical protein 3519716 5903198 Shal_2895 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675103.1 3519315 R 458817 CDS YP_001675104.1 167624810 5903199 complement(3519760..3520626) 1 NC_010334.1 KEGG: slo:Shew_2556 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 3520626 5903199 Shal_2896 Shewanella halifaxensis HAW-EB4 acyl-CoA thioesterase II YP_001675104.1 3519760 R 458817 CDS YP_001675105.1 167624811 5902960 complement(3520707..3521639) 1 NC_010334.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: slo:Shew_2557 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3521639 5902960 Shal_2897 Shewanella halifaxensis HAW-EB4 short-chain dehydrogenase/reductase SDR YP_001675105.1 3520707 R 458817 CDS YP_001675106.1 167624812 5902961 3521977..3522867 1 NC_010334.1 TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: slo:Shew_2558 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 3522867 5902961 Shal_2898 Shewanella halifaxensis HAW-EB4 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_001675106.1 3521977 D 458817 CDS YP_001675107.1 167624813 5902933 complement(3522959..3524506) 1 NC_010334.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 3524506 5902933 Shal_2899 Shewanella halifaxensis HAW-EB4 6-phosphogluconate dehydrogenase YP_001675107.1 3522959 R 458817 CDS YP_001675108.1 167624814 5902934 complement(3525438..3527342) 1 NC_010334.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sbm:Shew185_2844 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3527342 5902934 Shal_2900 Shewanella halifaxensis HAW-EB4 AMP-dependent synthetase and ligase YP_001675108.1 3525438 R 458817 CDS YP_001675109.1 167624815 5903166 3527707..3528105 1 NC_010334.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: slo:Shew_2569 transcriptional regulator, MerR family; MerR family transcriptional regulator 3528105 5903166 Shal_2901 Shewanella halifaxensis HAW-EB4 MerR family transcriptional regulator YP_001675109.1 3527707 D 458817 CDS YP_001675110.1 167624816 5903167 3528204..3529373 1 NC_010334.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: slo:Shew_2570 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3529373 5903167 Shal_2902 Shewanella halifaxensis HAW-EB4 acyl-CoA dehydrogenase domain-containing protein YP_001675110.1 3528204 D 458817 CDS YP_001675111.1 167624817 5903095 3529461..3531068 1 NC_010334.1 PFAM: carboxyl transferase; KEGG: sdn:Sden_2246 propionyl-CoA carboxylase; propionyl-CoA carboxylase 3531068 5903095 Shal_2903 Shewanella halifaxensis HAW-EB4 propionyl-CoA carboxylase YP_001675111.1 3529461 D 458817 CDS YP_001675112.1 167624818 5903096 3531127..3532008 1 NC_010334.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: slo:Shew_2572 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3532008 5903096 Shal_2904 Shewanella halifaxensis HAW-EB4 enoyl-CoA hydratase/isomerase YP_001675112.1 3531127 D 458817 CDS YP_001675113.1 167624819 5904982 3532010..3534118 1 NC_010334.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: slo:Shew_2573 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase L chain ATP-binding 3534118 5904982 Shal_2905 Shewanella halifaxensis HAW-EB4 carbamoyl-phosphate synthase L chain ATP-binding YP_001675113.1 3532010 D 458817 CDS YP_001675114.1 167624820 5904983 3534115..3534294 1 NC_010334.1 KEGG: slo:Shew_2573 carbamoyl-phosphate synthase L chain, ATP-binding; hypothetical protein 3534294 5904983 Shal_2906 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675114.1 3534115 D 458817 CDS YP_001675115.1 167624821 5904827 3534295..3535194 1 NC_010334.1 PFAM: pyruvate carboxyltransferase; KEGG: slo:Shew_2574 pyruvate carboxyltransferase; pyruvate carboxyltransferase 3535194 5904827 Shal_2907 Shewanella halifaxensis HAW-EB4 pyruvate carboxyltransferase YP_001675115.1 3534295 D 458817 CDS YP_001675116.1 167624822 5904828 3535266..3536030 1 NC_010334.1 KEGG: slo:Shew_2575 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 3536030 5904828 Shal_2908 Shewanella halifaxensis HAW-EB4 3-oxoacid CoA-transferase subunit A YP_001675116.1 3535266 D 458817 CDS YP_001675117.1 167624823 5905055 3536043..3536699 1 NC_010334.1 KEGG: slo:Shew_2576 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 3536699 5905055 Shal_2909 Shewanella halifaxensis HAW-EB4 3-oxoacid CoA-transferase subunit B YP_001675117.1 3536043 D 458817 CDS YP_001675118.1 167624824 5905056 complement(3536811..3539924) 1 NC_010334.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: shw:Sputw3181_4067 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 3539924 5905056 Shal_2910 Shewanella halifaxensis HAW-EB4 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001675118.1 3536811 R 458817 CDS YP_001675119.1 167624825 5904838 complement(3539958..3541094) 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSp0313 probable multidrug efflux system protein; RND family efflux transporter MFP subunit 3541094 5904838 Shal_2911 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001675119.1 3539958 R 458817 CDS YP_001675120.1 167624826 5904839 3541349..3542026 1 NC_010334.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pfl:PFL_5111 DNA-binding response regulator ColR, putative; two component transcriptional regulator 3542026 5904839 Shal_2912 Shewanella halifaxensis HAW-EB4 two component transcriptional regulator YP_001675120.1 3541349 D 458817 CDS YP_001675121.1 167624827 5904856 3542023..3543312 1 NC_010334.1 PFAM: histidine kinase A domain protein; KEGG: sfr:Sfri_3675 periplasmic sensor signal transduction histidine kinase; histidine kinase 3543312 5904856 Shal_2913 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001675121.1 3542023 D 458817 CDS YP_001675122.1 167624828 5904857 3543330..3543815 1 NC_010334.1 KEGG: vfi:VF1339 hypothetical protein; hypothetical protein 3543815 5904857 Shal_2914 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675122.1 3543330 D 458817 CDS YP_001675123.1 167624829 5905174 complement(3543905..3544906) 1 NC_010334.1 PFAM: alpha/beta hydrolase fold; KEGG: sbm:Shew185_3419 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3544906 5905174 Shal_2915 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase fold protein YP_001675123.1 3543905 R 458817 CDS YP_001675124.1 167624830 5905175 complement(3545109..3547127) 1 NC_010334.1 PFAM: beta-lactamase domain protein; KEGG: son:SO_1606 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein 3547127 5905175 Shal_2916 Shewanella halifaxensis HAW-EB4 beta-lactamase domain-containing protein YP_001675124.1 3545109 R 458817 CDS YP_001675125.1 167624831 5905410 3547270..3547818 1 NC_010334.1 KEGG: sbm:Shew185_0872 hypothetical protein; hypothetical protein 3547818 5905410 Shal_2917 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675125.1 3547270 D 458817 CDS YP_001675126.1 167624832 5905411 complement(3548075..3549460) 1 NC_010334.1 PFAM: cytochrome c552; KEGG: shn:Shewana3_0658 cytochrome c552; nitrite reductase 3549460 5905411 Shal_2918 Shewanella halifaxensis HAW-EB4 nitrite reductase YP_001675126.1 3548075 R 458817 CDS YP_001675127.1 167624833 5905482 3549845..3550285 1 NC_010334.1 KEGG: sdn:Sden_2534 hypothetical protein; hypothetical protein 3550285 5905482 Shal_2919 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675127.1 3549845 D 458817 CDS YP_001675128.1 167624834 5905483 complement(3550898..3552280) 1 NC_010334.1 PFAM: cytochrome c552; KEGG: shm:Shewmr7_3363 nitrite reductase (cytochrome; ammonia-forming); nitrite reductase 3552280 5905483 Shal_2920 Shewanella halifaxensis HAW-EB4 nitrite reductase YP_001675128.1 3550898 R 458817 CDS YP_001675129.1 167624835 5905321 3552882..3553187 1 NC_010334.1 KEGG: sdn:Sden_2534 hypothetical protein; hypothetical protein 3553187 5905321 Shal_2921 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675129.1 3552882 D 458817 CDS YP_001675130.1 167624836 5905322 complement(3553267..3553614) 1 NC_010334.1 PFAM: Endoribonuclease L-PSP; KEGG: vfi:VFA0365 translation initiation inhibitor; endoribonuclease L-PSP 3553614 5905322 Shal_2922 Shewanella halifaxensis HAW-EB4 endoribonuclease L-PSP YP_001675130.1 3553267 R 458817 CDS YP_001675131.1 167624837 5905547 3553804..3554295 1 NC_010334.1 KEGG: spc:Sputcn32_0630 hypothetical protein; hypothetical protein 3554295 5905547 Shal_2923 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675131.1 3553804 D 458817 CDS YP_001675132.1 167624838 5905548 complement(3554396..3555136) 1 NC_010334.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: sfr:Sfri_3126 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 3555136 5905548 Shal_2924 Shewanella halifaxensis HAW-EB4 cytoplasmic chaperone TorD family protein YP_001675132.1 3554396 R 458817 CDS YP_001675133.1 167624839 5905033 complement(3555221..3555886) 1 NC_010334.1 TIGRFAM: Dimethylsulfoxide reductase chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfr:Sfri_3683 4Fe-4S ferredoxin, iron-sulfur binding domain protein; dimethylsulfoxide reductase chain B 3555886 5905033 Shal_2925 Shewanella halifaxensis HAW-EB4 dimethylsulfoxide reductase chain B YP_001675133.1 3555221 R 458817 CDS YP_001675134.1 167624840 5905034 complement(3555901..3558423) 1 NC_010334.1 TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO_1429 anaerobic dimethyl sulfoxide reductase, A subunit; anaerobic dimethyl sulfoxide reductase subunit A 3558423 5905034 Shal_2926 Shewanella halifaxensis HAW-EB4 anaerobic dimethyl sulfoxide reductase subunit A YP_001675134.1 3555901 R 458817 CDS YP_001675135.1 167624841 5905696 complement(3558463..3560487) 1 NC_010334.1 KEGG: sfr:Sfri_3685 outer membrane protein; outer membrane protein 3560487 5905696 Shal_2927 Shewanella halifaxensis HAW-EB4 outer membrane protein YP_001675135.1 3558463 R 458817 CDS YP_001675136.1 167624842 5905697 complement(3560505..3561443) 1 NC_010334.1 TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: sfr:Sfri_3686 cytochrome c family protein; cytochrome C family protein 3561443 5905697 Shal_2928 Shewanella halifaxensis HAW-EB4 cytochrome C family protein YP_001675136.1 3560505 R 458817 CDS YP_001675137.1 167624843 5905764 3562136..3562597 1 NC_010334.1 KEGG: cps:CPS_0255 isoprenylcysteine carboxyl methyltransferase family protein; isoprenylcysteine carboxyl methyltransferase family protein 3562597 5905764 Shal_2929 Shewanella halifaxensis HAW-EB4 isoprenylcysteine carboxyl methyltransferase family protein YP_001675137.1 3562136 D 458817 CDS YP_001675138.1 167624844 5905765 complement(3562809..3564284) 1 NC_010334.1 PFAM: protein of unknown function DUF1176; protein of unknown function DUF1311; KEGG: pcr:Pcryo_1380 protein of unknown function DUF1176; hypothetical protein 3564284 5905765 Shal_2930 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675138.1 3562809 R 458817 CDS YP_001675139.1 167624845 5904711 3564721..3565032 1 NC_010334.1 hypothetical protein 3565032 5904711 Shal_2931 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675139.1 3564721 D 458817 CDS YP_001675140.1 167624846 5904712 3565074..3565775 1 NC_010334.1 hypothetical protein 3565775 5904712 Shal_2932 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675140.1 3565074 D 458817 CDS YP_001675141.1 167624847 5905692 3565778..3566677 1 NC_010334.1 hypothetical protein 3566677 5905692 Shal_2933 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675141.1 3565778 D 458817 CDS YP_001675142.1 167624848 5905693 3566699..3567667 1 NC_010334.1 KEGG: bam:Bamb_3528 hypothetical protein; hypothetical protein 3567667 5905693 Shal_2934 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675142.1 3566699 D 458817 CDS YP_001675143.1 167624849 5905829 3567657..3567923 1 NC_010334.1 hypothetical protein 3567923 5905829 Shal_2935 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675143.1 3567657 D 458817 CDS YP_001675144.1 167624850 5905830 complement(3568145..3569122) 1 NC_010334.1 PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein 3569122 5905830 Shal_2936 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675144.1 3568145 R 458817 CDS YP_001675145.1 167624851 5903127 complement(3569399..3569746) 1 NC_010334.1 hypothetical protein 3569746 5903127 Shal_2937 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675145.1 3569399 R 458817 CDS YP_001675146.1 167624852 5903128 complement(3570035..3570601) 1 NC_010334.1 PFAM: LemA family protein; KEGG: ilo:IL1567 uncharacterized conserved membrane protein, LemA family; LemA family protein 3570601 5903128 Shal_2938 Shewanella halifaxensis HAW-EB4 LemA family protein YP_001675146.1 3570035 R 458817 CDS YP_001675147.1 167624853 5906914 complement(3570720..3571982) 1 NC_010334.1 KEGG: ilo:IL1568 predicted membrane protein; hypothetical protein 3571982 5906914 Shal_2939 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675147.1 3570720 R 458817 CDS YP_001675148.1 167624854 5906915 complement(3571969..3573336) 1 NC_010334.1 KEGG: pfl:PFL_1944 hypothetical protein; hypothetical protein 3573336 5906915 Shal_2940 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675148.1 3571969 R 458817 CDS YP_001675149.1 167624855 5905712 complement(3573745..3574323) 1 NC_010334.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 3574323 5905712 Shal_2941 Shewanella halifaxensis HAW-EB4 thymidine kinase YP_001675149.1 3573745 R 458817 CDS YP_001675150.1 167624856 5905713 3574702..3576837 1 NC_010334.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: she:Shewmr4_1355 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp 3576837 5905713 Shal_2942 Shewanella halifaxensis HAW-EB4 peptidyl-dipeptidase Dcp YP_001675150.1 3574702 D 458817 CDS YP_001675151.1 167624857 5902649 complement(3577046..3578626) 1 NC_010334.1 PFAM: Na+/H+ antiporter NhaC; KEGG: slo:Shew_2582 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 3578626 5902649 Shal_2943 Shewanella halifaxensis HAW-EB4 Na+/H+ antiporter NhaC YP_001675151.1 3577046 R 458817 CDS YP_001675152.1 167624858 5902650 complement(3579124..3580047) 1 NC_010334.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: slo:Shew_2583 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 3580047 5902650 Shal_2944 Shewanella halifaxensis HAW-EB4 electron transfer flavoprotein subunit alpha YP_001675152.1 3579124 R 458817 CDS YP_001675153.1 167624859 5906662 complement(3580047..3580796) 1 NC_010334.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: slo:Shew_2584 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit alpha/beta 3580796 5906662 Shal_2945 Shewanella halifaxensis HAW-EB4 electron transfer flavoprotein subunit alpha/beta YP_001675153.1 3580047 R 458817 CDS YP_001675154.1 167624860 5906663 3581142..3581534 1 NC_010334.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: sbm:Shew185_2867 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 3581534 5906663 Shal_2946 Shewanella halifaxensis HAW-EB4 histone family protein nucleoid-structuring protein H-NS YP_001675154.1 3581142 D 458817 CDS YP_001675155.1 167624861 5906645 3581694..3584738 1 NC_010334.1 PFAM: amidohydrolase; KEGG: slo:Shew_2586 amidohydrolase; amidohydrolase 3584738 5906645 Shal_2947 Shewanella halifaxensis HAW-EB4 amidohydrolase YP_001675155.1 3581694 D 458817 CDS YP_001675156.1 167624862 5906646 3584741..3586135 1 NC_010334.1 KEGG: slo:Shew_2587 hypothetical protein; hypothetical protein 3586135 5906646 Shal_2948 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675156.1 3584741 D 458817 CDS YP_001675157.1 167624863 5906476 3586274..3586657 1 NC_010334.1 KEGG: shw:Sputw3181_1493 lipoprotein, putative; putative lipoprotein 3586657 5906476 Shal_2949 Shewanella halifaxensis HAW-EB4 putative lipoprotein YP_001675157.1 3586274 D 458817 CDS YP_001675158.1 167624864 5906477 3586685..3587458 1 NC_010334.1 PFAM: protein of unknown function UPF0066; KEGG: sfr:Sfri_2751 protein of unknown function UPF0066; hypothetical protein 3587458 5906477 Shal_2950 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675158.1 3586685 D 458817 CDS YP_001675159.1 167624865 5906385 3587468..3588100 1 NC_010334.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: shw:Sputw3181_1491 transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase 3588100 5906385 Shal_2951 Shewanella halifaxensis HAW-EB4 hexapaptide repeat-containing transferase YP_001675159.1 3587468 D 458817 CDS YP_001675160.1 167624866 5906386 3588430..3589899 1 NC_010334.1 PFAM: amino acid permease-associated region; KEGG: lin:lin2462 hypothetical protein; amino acid permease 3589899 5906386 Shal_2952 Shewanella halifaxensis HAW-EB4 amino acid permease YP_001675160.1 3588430 D 458817 CDS YP_001675161.1 167624867 5906357 complement(3590045..3590884) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hch:HCH_06121 transcriptional regulator; LysR family transcriptional regulator 3590884 5906357 Shal_2953 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001675161.1 3590045 R 458817 CDS YP_001675162.1 167624868 5906358 3591105..3592718 1 NC_010334.1 KEGG: cps:CPS_3603 hypothetical protein; hypothetical protein 3592718 5906358 Shal_2954 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675162.1 3591105 D 458817 CDS YP_001675163.1 167624869 5906231 3592720..3593430 1 NC_010334.1 KEGG: cps:CPS_3591 3-oxoadipate CoA-transferase, alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 3593430 5906231 Shal_2955 Shewanella halifaxensis HAW-EB4 3-oxoacid CoA-transferase subunit A YP_001675163.1 3592720 D 458817 CDS YP_001675164.1 167624870 5906232 3593427..3594122 1 NC_010334.1 KEGG: cps:CPS_3592 3-oxoadipate CoA-transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 3594122 5906232 Shal_2956 Shewanella halifaxensis HAW-EB4 3-oxoacid CoA-transferase subunit B YP_001675164.1 3593427 D 458817 CDS YP_001675165.1 167624871 5905936 3594184..3595590 1 NC_010334.1 PFAM: aminotransferase class-III; KEGG: cps:CPS_3593 putative glutamate-1-semialdehyde-2,1-aminomutase; class III aminotransferase 3595590 5905936 Shal_2957 Shewanella halifaxensis HAW-EB4 class III aminotransferase YP_001675165.1 3594184 D 458817 CDS YP_001675166.1 167624872 5905937 3595599..3596870 1 NC_010334.1 TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; KEGG: cps:CPS_3594 beta-ketoadipyl CoA thiolase; beta-ketoadipyl CoA thiolase 3596870 5905937 Shal_2958 Shewanella halifaxensis HAW-EB4 beta-ketoadipyl CoA thiolase YP_001675166.1 3595599 D 458817 CDS YP_001675167.1 167624873 5906030 complement(3597523..3598467) 1 NC_010334.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_3376 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase 3598467 5906030 Shal_2959 Shewanella halifaxensis HAW-EB4 nitrilase YP_001675167.1 3597523 R 458817 CDS YP_001675168.1 167624874 5906031 3598887..3600599 1 NC_010334.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3600599 5906031 Shal_2960 Shewanella halifaxensis HAW-EB4 prolyl-tRNA synthetase YP_001675168.1 3598887 D 458817 CDS YP_001675169.1 167624875 5907026 3601087..3602211 1 NC_010334.1 PFAM: Patatin; KEGG: saz:Sama_1160 hypothetical protein; patatin 3602211 5907026 Shal_2961 Shewanella halifaxensis HAW-EB4 patatin YP_001675169.1 3601087 D 458817 CDS YP_001675170.1 167624876 5907027 complement(3602204..3602926) 1 NC_010334.1 KEGG: ppr:PBPRB1925 hypothetical protein; hypothetical protein 3602926 5907027 Shal_2962 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675170.1 3602204 R 458817 CDS YP_001675171.1 167624877 5906928 complement(3603027..3604976) 1 NC_010334.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: slo:Shew_2617 potassium efflux system protein; potassium efflux system protein 3604976 5906928 Shal_2963 Shewanella halifaxensis HAW-EB4 potassium efflux system protein YP_001675171.1 3603027 R 458817 CDS YP_001675172.1 167624878 5906929 3605182..3606084 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sbl:Sbal_1467 diguanylate cyclase; diguanylate cyclase 3606084 5906929 Shal_2964 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001675172.1 3605182 D 458817 CDS YP_001675173.1 167624879 5906837 complement(3606036..3607466) 1 NC_010334.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: shn:Shewana3_2799 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase 3607466 5906837 Shal_2965 Shewanella halifaxensis HAW-EB4 tRNA(Ile)-lysidine synthetase YP_001675173.1 3606036 R 458817 CDS YP_001675174.1 167624880 5906838 complement(3607468..3611001) 1 NC_010334.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 3611001 dnaE 5906838 dnaE Shewanella halifaxensis HAW-EB4 DNA polymerase III subunit alpha YP_001675174.1 3607468 R 458817 CDS YP_001675175.1 167624881 5906833 complement(3611111..3611722) 1 NC_010334.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 3611722 rnhB 5906833 rnhB Shewanella halifaxensis HAW-EB4 ribonuclease HII YP_001675175.1 3611111 R 458817 CDS YP_001675176.1 167624882 5906834 complement(3611722..3612873) 1 NC_010334.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 3612873 lpxB 5906834 lpxB Shewanella halifaxensis HAW-EB4 lipid-A-disaccharide synthase YP_001675176.1 3611722 R 458817 CDS YP_001675177.1 167624883 5906806 complement(3612941..3613711) 1 NC_010334.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 3613711 5906806 Shal_2969 Shewanella halifaxensis HAW-EB4 UDP-N-acetylglucosamine acyltransferase YP_001675177.1 3612941 R 458817 CDS YP_001675178.1 167624884 5906807 complement(3613708..3614169) 1 NC_010334.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 3614169 fabZ 5906807 fabZ Shewanella halifaxensis HAW-EB4 (3R)-hydroxymyristoyl-ACP dehydratase YP_001675178.1 3613708 R 458817 CDS YP_001675179.1 167624885 5906781 complement(3614207..3615223) 1 NC_010334.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 3615223 lpxD 5906781 lpxD Shewanella halifaxensis HAW-EB4 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_001675179.1 3614207 R 458817 CDS YP_001675180.1 167624886 5906782 complement(3615228..3615734) 1 NC_010334.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: slo:Shew_2626 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 3615734 5906782 Shal_2972 Shewanella halifaxensis HAW-EB4 outer membrane chaperone Skp YP_001675180.1 3615228 R 458817 CDS YP_001675181.1 167624887 5906747 complement(3615785..3618268) 1 NC_010334.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: shm:Shewmr7_2700 surface antigen (D15); surface antigen (D15) 3618268 5906747 Shal_2973 Shewanella halifaxensis HAW-EB4 surface antigen (D15) YP_001675181.1 3615785 R 458817 CDS YP_001675182.1 167624888 5906748 complement(3618300..3619670) 1 NC_010334.1 KEGG: son:SO_1636 membrane-associated zinc metalloprotease, putative; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; putative membrane-associated zinc metalloprotease 3619670 5906748 Shal_2974 Shewanella halifaxensis HAW-EB4 putative membrane-associated zinc metalloprotease YP_001675182.1 3618300 R 458817 CDS YP_001675183.1 167624889 5906658 complement(3619685..3620875) 1 NC_010334.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3620875 5906658 Shal_2975 Shewanella halifaxensis HAW-EB4 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_001675183.1 3619685 R 458817 CDS YP_001675184.1 167624890 5906659 complement(3620880..3621737) 1 NC_010334.1 PFAM: phosphatidate cytidylyltransferase; KEGG: saz:Sama_1144 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 3621737 5906659 Shal_2976 Shewanella halifaxensis HAW-EB4 phosphatidate cytidylyltransferase YP_001675184.1 3620880 R 458817 CDS YP_001675185.1 167624891 5906457 complement(3621758..3622558) 1 NC_010334.1 KEGG: sbm:Shew185_1449 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 3622558 5906457 Shal_2977 Shewanella halifaxensis HAW-EB4 undecaprenyl diphosphate synthase YP_001675185.1 3621758 R 458817 CDS YP_001675186.1 167624892 5906458 complement(3622813..3623370) 1 NC_010334.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 3623370 frr 5906458 frr Shewanella halifaxensis HAW-EB4 ribosome recycling factor YP_001675186.1 3622813 R 458817 CDS YP_001675187.1 167624893 5906389 complement(3623403..3624131) 1 NC_010334.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 3624131 pyrH 5906389 pyrH Shewanella halifaxensis HAW-EB4 uridylate kinase YP_001675187.1 3623403 R 458817 CDS YP_001675188.1 167624894 5906390 complement(3624275..3625126) 1 NC_010334.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 3625126 tsf 5906390 tsf Shewanella halifaxensis HAW-EB4 elongation factor Ts YP_001675188.1 3624275 R 458817 CDS YP_001675189.1 167624895 5906194 complement(3625260..3625988) 1 NC_010334.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 3625988 rpsB 5906194 rpsB Shewanella halifaxensis HAW-EB4 30S ribosomal protein S2 YP_001675189.1 3625260 R 458817 CDS YP_001675190.1 167624896 5906195 3626283..3627083 1 NC_010334.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 3627083 5906195 Shal_2982 Shewanella halifaxensis HAW-EB4 methionine aminopeptidase YP_001675190.1 3626283 D 458817 CDS YP_001675191.1 167624897 5906145 3627299..3629854 1 NC_010334.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3629854 5906145 Shal_2983 Shewanella halifaxensis HAW-EB4 PII uridylyl-transferase YP_001675191.1 3627299 D 458817 CDS YP_001675192.1 167624898 5906146 3629886..3630710 1 NC_010334.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 3630710 dapD 5906146 dapD Shewanella halifaxensis HAW-EB4 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_001675192.1 3629886 D 458817 CDS YP_001675193.1 167624899 5906048 3631186..3631530 1 NC_010334.1 KEGG: shn:Shewana3_2819 hypothetical protein; hypothetical protein 3631530 5906048 Shal_2985 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675193.1 3631186 D 458817 CDS YP_001675194.1 167624900 5906049 complement(3631599..3632432) 1 NC_010334.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: sfr:Sfri_1265 formyltetrahydrofolate deformylase; formyltetrahydrofolate deformylase 3632432 5906049 Shal_2986 Shewanella halifaxensis HAW-EB4 formyltetrahydrofolate deformylase YP_001675194.1 3631599 R 458817 CDS YP_001675195.1 167624901 5905972 complement(3632778..3633242) 1 NC_010334.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 3633242 5905972 Shal_2987 Shewanella halifaxensis HAW-EB4 flavodoxin YP_001675195.1 3632778 R 458817 CDS YP_001675196.1 167624902 5905973 complement(3633571..3634410) 1 NC_010334.1 PFAM: pseudouridine synthase; KEGG: slo:Shew_2643 pseudouridylate synthase; pseudouridine synthase 3634410 5905973 Shal_2988 Shewanella halifaxensis HAW-EB4 pseudouridine synthase YP_001675196.1 3633571 R 458817 CDS YP_001675197.1 167624903 5904895 complement(3634432..3634752) 1 NC_010334.1 PFAM: protein of unknown function DUF446; KEGG: son:SO_1619 hypothetical protein; hypothetical protein 3634752 5904895 Shal_2989 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675197.1 3634432 R 458817 CDS YP_001675198.1 167624904 5904896 3635027..3636040 1 NC_010334.1 KEGG: shn:Shewana3_2826 hypothetical protein; hypothetical protein 3636040 5904896 Shal_2990 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675198.1 3635027 D 458817 CDS YP_001675199.1 167624905 5904649 3636037..3636432 1 NC_010334.1 KEGG: slo:Shew_2646 hypothetical protein; hypothetical protein 3636432 5904649 Shal_2991 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675199.1 3636037 D 458817 CDS YP_001675200.1 167624906 5904650 complement(3637631..3637930) 1 NC_010334.1 KEGG: pmy:Pmen_1824 membrane protein-like protein; hypothetical protein 3637930 5904650 Shal_2992 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675200.1 3637631 R 458817 CDS YP_001675201.1 167624907 5904274 complement(3637923..3638546) 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_2722 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3638546 5904274 Shal_2993 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001675201.1 3637923 R 458817 CDS YP_001675202.1 167624908 5904275 3638749..3638982 1 NC_010334.1 KEGG: slo:Shew_2649 hypothetical protein; hypothetical protein 3638982 5904275 Shal_2994 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675202.1 3638749 D 458817 CDS YP_001675203.1 167624909 5903960 complement(3639003..3639395) 1 NC_010334.1 KEGG: sbm:Shew185_1429 hypothetical protein; hypothetical protein 3639395 5903960 Shal_2995 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675203.1 3639003 R 458817 CDS YP_001675204.1 167624910 5903961 3639534..3639902 1 NC_010334.1 KEGG: slo:Shew_2651 hypothetical protein; hypothetical protein 3639902 5903961 Shal_2996 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675204.1 3639534 D 458817 CDS YP_001675205.1 167624911 5904243 3639889..3640662 1 NC_010334.1 KEGG: slo:Shew_2652 hypothetical protein; hypothetical protein 3640662 5904243 Shal_2997 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675205.1 3639889 D 458817 CDS YP_001675206.1 167624912 5904244 complement(3640753..3641394) 1 NC_010334.1 putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 3641394 5904244 Shal_2998 Shewanella halifaxensis HAW-EB4 SecY interacting protein Syd YP_001675206.1 3640753 R 458817 CDS YP_001675207.1 167624913 5906865 3641439..3642311 1 NC_010334.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3642311 queF 5906865 queF Shewanella halifaxensis HAW-EB4 7-cyano-7-deazaguanine reductase YP_001675207.1 3641439 D 458817 CDS YP_001675208.1 167624914 5906866 complement(3642538..3643353) 1 NC_010334.1 hypothetical protein 3643353 5906866 Shal_3000 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675208.1 3642538 R 458817 CDS YP_001675209.1 167624915 5903376 complement(3643541..3644116) 1 NC_010334.1 KEGG: vfi:VF0867 hypothetical protein; hypothetical protein 3644116 5903376 Shal_3001 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675209.1 3643541 R 458817 CDS YP_001675210.1 167624916 5903377 complement(3644588..3645493) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: son:SO_1607 transcriptional regulator, LysR family; LysR family transcriptional regulator 3645493 5903377 Shal_3002 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001675210.1 3644588 R 458817 CDS YP_001675211.1 167624917 5906092 complement(3645584..3646486) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbl:Sbal_1430 transcriptional regulator, LysR family; LysR family transcriptional regulator 3646486 5906092 Shal_3003 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001675211.1 3645584 R 458817 CDS YP_001675212.1 167624918 5906093 3646686..3648671 1 NC_010334.1 PFAM: beta-lactamase domain protein; KEGG: sbl:Sbal_1429 beta-lactamase domain protein; beta-lactamase domain-containing protein 3648671 5906093 Shal_3004 Shewanella halifaxensis HAW-EB4 beta-lactamase domain-containing protein YP_001675212.1 3646686 D 458817 CDS YP_001675213.1 167624919 5906121 complement(3648764..3649720) 1 NC_010334.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: sbm:Shew185_1421 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase 3649720 5906121 Shal_3005 Shewanella halifaxensis HAW-EB4 4'-phosphopantetheinyl transferase YP_001675213.1 3648764 R 458817 CDS YP_001675214.1 167624920 5906122 complement(3649836..3651863) 1 NC_010334.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3651863 5906122 Shal_3006 Shewanella halifaxensis HAW-EB4 elongation factor G YP_001675214.1 3649836 R 458817 CDS YP_001675215.1 167624921 5903091 3652226..3653092 1 NC_010334.1 KEGG: slo:Shew_2664 transcriptional regulator, putative; transcriptional regulator 3653092 5903091 Shal_3007 Shewanella halifaxensis HAW-EB4 transcriptional regulator YP_001675215.1 3652226 D 458817 CDS YP_001675216.1 167624922 5903092 3653092..3661389 1 NC_010334.1 KEGG: slo:Shew_2665 beta-ketoacyl synthase; TIGRFAM: Polyketide-type polyunsaturated fatty acid synthase, PfaA; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; polyketide-type polyunsaturated fatty acid synthase PfaA 3661389 5903092 Shal_3008 Shewanella halifaxensis HAW-EB4 polyketide-type polyunsaturated fatty acid synthase PfaA YP_001675216.1 3653092 D 458817 CDS YP_001675217.1 167624923 5906413 3661389..3663773 1 NC_010334.1 TIGRFAM: PfaB family protein; KEGG: ppr:PBPRA1459 omega-3 polyunsaturated fatty acid synthase PfaB; PfaB family protein 3663773 5906413 Shal_3009 Shewanella halifaxensis HAW-EB4 PfaB family protein YP_001675217.1 3661389 D 458817 CDS YP_001675218.1 167624924 5906414 3663773..3669652 1 NC_010334.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; Beta-ketoacyl synthase; KEGG: slo:Shew_2667 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ 3669652 5906414 Shal_3010 Shewanella halifaxensis HAW-EB4 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_001675218.1 3663773 D 458817 CDS YP_001675219.1 167624925 5904421 3669902..3671530 1 NC_010334.1 TIGRFAM: PfaD family protein; KEGG: slo:Shew_2668 2-nitropropane dioxygenase, NPD; PfaD family protein 3671530 5904421 Shal_3011 Shewanella halifaxensis HAW-EB4 PfaD family protein YP_001675219.1 3669902 D 458817 CDS YP_001675220.1 167624926 5904422 complement(3672032..3672835) 1 NC_010334.1 hypothetical protein 3672835 5904422 Shal_3012 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675220.1 3672032 R 458817 CDS YP_001675221.1 167624927 5906065 3673383..3675116 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE4 domain protein; KEGG: sdn:Sden_1662 GGDEF domain; diguanylate cyclase 3675116 5906065 Shal_3013 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001675221.1 3673383 D 458817 CDS YP_001675222.1 167624928 5906066 3675319..3675867 1 NC_010334.1 KEGG: shm:Shewmr7_0435 methylation site containing protein; hypothetical protein 3675867 5906066 Shal_3014 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675222.1 3675319 D 458817 CDS YP_001675223.1 167624929 5905276 complement(3676025..3678337) 1 NC_010334.1 PFAM: peptidase S45 penicillin amidase; KEGG: slo:Shew_2669 penicillin amidase; penicillin amidase 3678337 5905276 Shal_3015 Shewanella halifaxensis HAW-EB4 penicillin amidase YP_001675223.1 3676025 R 458817 CDS YP_001675224.1 167624930 5905277 3678575..3678826 1 NC_010334.1 KEGG: vha:VIBHAR_05811 hypothetical protein; hypothetical protein 3678826 5905277 Shal_3016 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675224.1 3678575 D 458817 CDS YP_001675225.1 167624931 5905700 3679423..3680733 1 NC_010334.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: vfi:VF1790 ATP-dependent RNA helicase; DEAD/DEAH box helicase 3680733 5905700 Shal_3017 Shewanella halifaxensis HAW-EB4 DEAD/DEAH box helicase YP_001675225.1 3679423 D 458817 CDS YP_001675226.1 167624932 5905701 3681057..3682247 1 NC_010334.1 KEGG: sfr:Sfri_0530 hypothetical protein; hypothetical protein 3682247 5905701 Shal_3018 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675226.1 3681057 D 458817 CDS YP_001675227.1 167624933 5905268 complement(3682322..3683653) 1 NC_010334.1 KEGG: sfr:Sfri_3605 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 3683653 5905268 Shal_3019 Shewanella halifaxensis HAW-EB4 amidohydrolase YP_001675227.1 3682322 R 458817 CDS YP_001675228.1 167624934 5905269 3684040..3686328 1 NC_010334.1 TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: son:SO_0719 TonB-dependent receptor, putative; TonB-dependent heme/hemoglobin receptor family protein 3686328 5905269 Shal_3020 Shewanella halifaxensis HAW-EB4 TonB-dependent heme/hemoglobin receptor family protein YP_001675228.1 3684040 D 458817 CDS YP_001675229.1 167624935 5905976 complement(3686418..3688850) 1 NC_010334.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_1347 TonB-dependent receptor; TonB-dependent receptor plug 3688850 5905976 Shal_3021 Shewanella halifaxensis HAW-EB4 TonB-dependent receptor plug YP_001675229.1 3686418 R 458817 CDS YP_001675230.1 167624936 5906338 complement(3689779..3690648) 1 NC_010334.1 KEGG: shm:Shewmr7_3906 hypothetical protein; hypothetical protein 3690648 5906338 Shal_3023 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675230.1 3689779 R 458817 CDS YP_001675231.1 167624937 5906339 3691872..3692192 1 NC_010334.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: slo:Shew_2694 propeptide, PepSY amd peptidase M4; peptidase 3692192 5906339 Shal_3024 Shewanella halifaxensis HAW-EB4 peptidase YP_001675231.1 3691872 D 458817 CDS YP_001675232.1 167624938 5906723 3692309..3692998 1 NC_010334.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO_4647 DNA-binding response regulator; two component transcriptional regulator 3692998 5906723 Shal_3025 Shewanella halifaxensis HAW-EB4 two component transcriptional regulator YP_001675232.1 3692309 D 458817 CDS YP_001675233.1 167624939 5906724 3692979..3694538 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: pin:Ping_0281 sensor histidine kinase with ATPase domain; histidine kinase 3694538 5906724 Shal_3026 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001675233.1 3692979 D 458817 CDS YP_001675234.1 167624940 5906622 3694636..3695985 1 NC_010334.1 KEGG: slo:Shew_2697 hypothetical protein; hypothetical protein 3695985 5906622 Shal_3027 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675234.1 3694636 D 458817 CDS YP_001675235.1 167624941 5906623 complement(3696352..3697731) 1 NC_010334.1 SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein typical subtype; KEGG: shm:Shewmr7_0539 serine/threonine protein kinase; serine/threonine protein kinase 3697731 5906623 Shal_3028 Shewanella halifaxensis HAW-EB4 serine/threonine protein kinase YP_001675235.1 3696352 R 458817 CDS YP_001675236.1 167624942 5906625 complement(3697883..3698647) 1 NC_010334.1 PFAM: protein of unknown function DUF599; KEGG: slo:Shew_2715 protein of unknown function DUF599; hypothetical protein 3698647 5906625 Shal_3029 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675236.1 3697883 R 458817 CDS YP_001675237.1 167624943 5906626 complement(3698740..3698901) 1 NC_010334.1 KEGG: slo:Shew_2719 hypothetical protein; hypothetical protein 3698901 5906626 Shal_3030 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675237.1 3698740 R 458817 CDS YP_001675238.1 167624944 5906830 3699113..3699340 1 NC_010334.1 KEGG: shm:Shewmr7_2754 hypothetical protein; hypothetical protein 3699340 5906830 Shal_3031 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675238.1 3699113 D 458817 CDS YP_001675239.1 167624945 5906831 complement(3699487..3700257) 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: slo:Shew_0630 conserved hypothetical protein 245; hypothetical protein 3700257 5906831 Shal_3032 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675239.1 3699487 R 458817 CDS YP_001675240.1 167624946 5904166 3700477..3701700 1 NC_010334.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 3701700 5904166 Shal_3033 Shewanella halifaxensis HAW-EB4 peptidase T YP_001675240.1 3700477 D 458817 CDS YP_001675241.1 167624947 5904167 3701859..3702551 1 NC_010334.1 KEGG: sfr:Sfri_3204 nucleoside-diphosphate-sugar epimerase; nucleoside-diphosphate-sugar epimerase 3702551 5904167 Shal_3034 Shewanella halifaxensis HAW-EB4 nucleoside-diphosphate-sugar epimerase YP_001675241.1 3701859 D 458817 CDS YP_001675242.1 167624948 5903848 3702680..3703447 1 NC_010334.1 PFAM: protein of unknown function DUF633; KEGG: sbm:Shew185_2328 hypothetical protein; hypothetical protein 3703447 5903848 Shal_3035 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675242.1 3702680 D 458817 CDS YP_001675243.1 167624949 5903849 3703523..3704092 1 NC_010334.1 PFAM: NUDIX hydrolase; KEGG: slo:Shew_2723 NUDIX hydrolase; NUDIX hydrolase 3704092 5903849 Shal_3036 Shewanella halifaxensis HAW-EB4 NUDIX hydrolase YP_001675243.1 3703523 D 458817 CDS YP_001675244.1 167624950 5903741 complement(3704150..3704542) 1 NC_010334.1 KEGG: sde:Sde_0094 hypothetical protein; hypothetical protein 3704542 5903741 Shal_3037 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675244.1 3704150 R 458817 CDS YP_001675245.1 167624951 5903742 complement(3704866..3706095) 1 NC_010334.1 PFAM: sodium/glutamate symporter; KEGG: psa:PST_0687 sodium-glutamate symporter; sodium/glutamate symporter 3706095 5903742 Shal_3038 Shewanella halifaxensis HAW-EB4 sodium/glutamate symporter YP_001675245.1 3704866 R 458817 CDS YP_001675246.1 167624952 5903984 3706687..3707955 1 NC_010334.1 PFAM: sodium:dicarboxylate symporter; KEGG: shw:Sputw3181_3503 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 3707955 5903984 Shal_3039 Shewanella halifaxensis HAW-EB4 sodium:dicarboxylate symporter YP_001675246.1 3706687 D 458817 CDS YP_001675247.1 167624953 5903985 complement(3708054..3708968) 1 NC_010334.1 PFAM: Indigoidine synthase A family protein; KEGG: slo:Shew_2724 indigoidine synthase A family protein; indigoidine synthase A family protein 3708968 5903985 Shal_3040 Shewanella halifaxensis HAW-EB4 indigoidine synthase A family protein YP_001675247.1 3708054 R 458817 CDS YP_001675248.1 167624954 5903530 complement(3708962..3710053) 1 NC_010334.1 PFAM: PfkB domain protein; Helix-turn-helix type 11 domain protein; KEGG: slo:Shew_2725 PfkB domain protein; ribokinase-like domain-containing protein 3710053 5903530 Shal_3041 Shewanella halifaxensis HAW-EB4 ribokinase-like domain-containing protein YP_001675248.1 3708962 R 458817 CDS YP_001675249.1 167624955 5903531 complement(3710670..3712415) 1 NC_010334.1 TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; KEGG: vfi:VF1065 integral membrane protein with TrkA domains; YidE/YbjL protein 3712415 5903531 Shal_3042 Shewanella halifaxensis HAW-EB4 YidE/YbjL protein YP_001675249.1 3710670 R 458817 CDS YP_001675250.1 167624956 5903962 complement(3712822..3714216) 1 NC_010334.1 TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; KEGG: vfi:VF1064 glutamate decarboxylase; glutamate decarboxylase 3714216 5903962 Shal_3043 Shewanella halifaxensis HAW-EB4 glutamate decarboxylase YP_001675250.1 3712822 R 458817 CDS YP_001675251.1 167624957 5903963 3714715..3715041 1 NC_010334.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sdn:Sden_2795 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 3715041 5903963 Shal_3044 Shewanella halifaxensis HAW-EB4 antibiotic biosynthesis monooxygenase YP_001675251.1 3714715 D 458817 CDS YP_001675252.1 167624958 5903654 complement(3715177..3715383) 1 NC_010334.1 KEGG: cps:CPS_3943 hypothetical protein; hypothetical protein 3715383 5903654 Shal_3045 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675252.1 3715177 R 458817 CDS YP_001675253.1 167624959 5903655 complement(3715665..3716120) 1 NC_010334.1 PFAM: protein of unknown function DUF188; KEGG: slo:Shew_2726 protein of unknown function DUF188; hypothetical protein 3716120 5903655 Shal_3046 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675253.1 3715665 R 458817 CDS YP_001675254.1 167624960 5905373 3716286..3716963 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: sbl:Sbal_1396 hypothetical protein; hypothetical protein 3716963 5905373 Shal_3047 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675254.1 3716286 D 458817 CDS YP_001675255.1 167624961 5905374 3717090..3718439 1 NC_010334.1 PFAM: Fmu (Sun) domain protein; KEGG: sfr:Sfri_1209 Fmu (Sun) domain protein; Fmu (Sun) domain-containing protein 3718439 5905374 Shal_3048 Shewanella halifaxensis HAW-EB4 Fmu (Sun) domain-containing protein YP_001675255.1 3717090 D 458817 CDS YP_001675256.1 167624962 5905993 complement(3718584..3719123) 1 NC_010334.1 PFAM: YfaZ family protein; KEGG: slo:Shew_2740 YfaZ family protein; hypothetical protein 3719123 5905993 Shal_3049 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675256.1 3718584 R 458817 CDS YP_001675257.1 167624963 5905994 3719542..3720621 1 NC_010334.1 KEGG: slo:Shew_3409 putative lipoprotein; putative lipoprotein 3720621 5905994 Shal_3050 Shewanella halifaxensis HAW-EB4 putative lipoprotein YP_001675257.1 3719542 D 458817 CDS YP_001675258.1 167624964 5906712 3720791..3721273 1 NC_010334.1 PFAM: glutathione peroxidase; KEGG: sfr:Sfri_2764 glutathione peroxidase; glutathione peroxidase 3721273 5906712 Shal_3051 Shewanella halifaxensis HAW-EB4 glutathione peroxidase YP_001675258.1 3720791 D 458817 CDS YP_001675259.1 167624965 5906713 3721710..3722642 1 NC_010334.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 3722642 pyrB 5906713 pyrB Shewanella halifaxensis HAW-EB4 aspartate carbamoyltransferase catalytic subunit YP_001675259.1 3721710 D 458817 CDS YP_001675260.1 167624966 5903804 3722642..3723100 1 NC_010334.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit 3723100 5903804 Shal_3053 Shewanella halifaxensis HAW-EB4 aspartate carbamoyltransferase regulatory subunit YP_001675260.1 3722642 D 458817 CDS YP_001675261.1 167624967 5903805 complement(3723417..3723557) 1 NC_010334.1 KEGG: ppr:PBPRA0992 hypothetical transcriptional regulator; putative transcriptional regulator 3723557 5903805 Shal_3054 Shewanella halifaxensis HAW-EB4 putative transcriptional regulator YP_001675261.1 3723417 R 458817 CDS YP_001675262.1 167624968 5903670 complement(3724682..3726463) 1 NC_010334.1 PFAM: Peptidase M1 membrane alanine aminopeptidase ; Leukotriene A4 hydrolase; KEGG: slo:Shew_2742 peptidase M1, membrane alanine aminopeptidase; peptidase M1 membrane alanine aminopeptidase 3726463 5903670 Shal_3055 Shewanella halifaxensis HAW-EB4 peptidase M1 membrane alanine aminopeptidase YP_001675262.1 3724682 R 458817 CDS YP_001675263.1 167624969 5903671 3726575..3727471 1 NC_010334.1 PFAM: Peptidase M9A collagenase domain protein; KEGG: slo:Shew_2743 microbial collagenase; collagenase 3727471 5903671 Shal_3056 Shewanella halifaxensis HAW-EB4 collagenase YP_001675263.1 3726575 D 458817 CDS YP_001675264.1 167624970 5903652 complement(3727989..3728960) 1 NC_010334.1 TIGRFAM: phosphate binding protein; KEGG: slo:Shew_2747 phosphate binding protein; phosphate-binding protein 3728960 5903652 Shal_3057 Shewanella halifaxensis HAW-EB4 phosphate-binding protein YP_001675264.1 3727989 R 458817 CDS YP_001675265.1 167624971 5903653 complement(3729152..3730462) 1 NC_010334.1 KEGG: son:SO_1559 phosphate regulon sensor protein PhoR; TIGRFAM: Phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing signal transduction histidine kinase 3730462 5903653 Shal_3058 Shewanella halifaxensis HAW-EB4 PAS/PAC sensor-containing signal transduction histidine kinase YP_001675265.1 3729152 R 458817 CDS YP_001675266.1 167624972 5904038 complement(3730537..3731226) 1 NC_010334.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_2749 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3731226 5904038 Shal_3059 Shewanella halifaxensis HAW-EB4 two component transcriptional regulator YP_001675266.1 3730537 R 458817 CDS YP_001675267.1 167624973 5904039 complement(3731454..3732404) 1 NC_010334.1 PFAM: porin Gram-negative type; KEGG: slo:Shew_2750 porin, gram-negative type; porin 3732404 5904039 Shal_3060 Shewanella halifaxensis HAW-EB4 porin YP_001675267.1 3731454 R 458817 CDS YP_001675268.1 167624974 5903735 3732693..3733604 1 NC_010334.1 Required for efficient pilin antigenic variation; recombination associated protein 3733604 rdgC 5903735 rdgC Shewanella halifaxensis HAW-EB4 recombination associated protein YP_001675268.1 3732693 D 458817 CDS YP_001675269.1 167624975 5903736 complement(3733687..3735492) 1 NC_010334.1 PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: sbm:Shew185_1361 peptidase M61 domain protein; peptidase M61 domain-containing protein 3735492 5903736 Shal_3062 Shewanella halifaxensis HAW-EB4 peptidase M61 domain-containing protein YP_001675269.1 3733687 R 458817 CDS YP_001675270.1 167624976 5903672 3735621..3737798 1 NC_010334.1 SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_2781 TPR repeat-containing protein; tetratricopeptide domain-containing protein 3737798 5903672 Shal_3063 Shewanella halifaxensis HAW-EB4 tetratricopeptide domain-containing protein YP_001675270.1 3735621 D 458817 CDS YP_001675271.1 167624977 5903673 3737918..3739474 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sbm:Shew185_1359 diguanylate cyclase; diguanylate cyclase 3739474 5903673 Shal_3064 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001675271.1 3737918 D 458817 CDS YP_001675272.1 167624978 5903111 3739554..3740906 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: sdn:Sden_2557 conserved hypothetical protein 730; hypothetical protein 3740906 5903111 Shal_3065 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675272.1 3739554 D 458817 CDS YP_001675273.1 167624979 5903112 3740916..3741674 1 NC_010334.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3741674 xni 5903112 xni Shewanella halifaxensis HAW-EB4 exonuclease IX YP_001675273.1 3740916 D 458817 CDS YP_001675274.1 167624980 5904719 3741787..3742173 1 NC_010334.1 KEGG: slo:Shew_2757 hypothetical protein; hypothetical protein 3742173 5904719 Shal_3067 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675274.1 3741787 D 458817 CDS YP_001675275.1 167624981 5904720 complement(3742935..3745742) 1 NC_010334.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: slo:Shew_2759 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 3745742 5904720 Shal_3068 Shewanella halifaxensis HAW-EB4 peptidase S9 prolyl oligopeptidase YP_001675275.1 3742935 R 458817 CDS YP_001675276.1 167624982 5904676 3745984..3746994 1 NC_010334.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 3746994 5904676 Shal_3069 Shewanella halifaxensis HAW-EB4 isocitrate dehydrogenase YP_001675276.1 3745984 D 458817 CDS YP_001675277.1 167624983 5904677 complement(3747157..3748239) 1 NC_010334.1 KEGG: slo:Shew_2761 hypothetical protein; putative RNA 2'-O-ribose methyltransferase 3748239 5904677 Shal_3070 Shewanella halifaxensis HAW-EB4 putative RNA 2'-O-ribose methyltransferase YP_001675277.1 3747157 R 458817 CDS YP_001675278.1 167624984 5904669 complement(3748502..3748888) 1 NC_010334.1 PFAM: protein of unknown function DUF423; KEGG: slo:Shew_2762 protein of unknown function DUF423; hypothetical protein 3748888 5904669 Shal_3071 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675278.1 3748502 R 458817 CDS YP_001675279.1 167624985 5904670 complement(3748971..3749705) 1 NC_010334.1 KEGG: slo:Shew_2763 dienelactone hydrolase; dienelactone hydrolase 3749705 5904670 Shal_3072 Shewanella halifaxensis HAW-EB4 dienelactone hydrolase YP_001675279.1 3748971 R 458817 CDS YP_001675280.1 167624986 5904567 complement(3749686..3750597) 1 NC_010334.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3750597 5904567 Shal_3073 Shewanella halifaxensis HAW-EB4 DNA-binding transcriptional activator GcvA YP_001675280.1 3749686 R 458817 CDS YP_001675281.1 167624987 5904568 3750778..3751011 1 NC_010334.1 KEGG: slo:Shew_2765 hypothetical protein; hypothetical protein 3751011 5904568 Shal_3074 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675281.1 3750778 D 458817 CDS YP_001675282.1 167624988 5904491 complement(3751163..3752617) 1 NC_010334.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 3752617 5904491 Shal_3075 Shewanella halifaxensis HAW-EB4 thiamine biosynthesis protein ThiI YP_001675282.1 3751163 R 458817 CDS YP_001675283.1 167624989 5904492 complement(3752807..3753775) 1 NC_010334.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB 3753775 motB 5904492 motB Shewanella halifaxensis HAW-EB4 flagellar motor protein MotB YP_001675283.1 3752807 R 458817 CDS YP_001675284.1 167624990 5904402 complement(3753780..3754547) 1 NC_010334.1 Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA 3754547 5904402 Shal_3077 Shewanella halifaxensis HAW-EB4 flagellar motor protein PomA YP_001675284.1 3753780 R 458817 CDS YP_001675285.1 167624991 5904403 3754982..3755230 1 NC_010334.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: sbl:Sbal_1359 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 3755230 5904403 Shal_3078 Shewanella halifaxensis HAW-EB4 exodeoxyribonuclease VII small subunit YP_001675285.1 3754982 D 458817 CDS YP_001675286.1 167624992 5904394 3755231..3756112 1 NC_010334.1 PFAM: Polyprenyl synthetase; KEGG: slo:Shew_2770 polyprenyl synthetase; polyprenyl synthetase 3756112 5904394 Shal_3079 Shewanella halifaxensis HAW-EB4 polyprenyl synthetase YP_001675286.1 3755231 D 458817 CDS YP_001675287.1 167624993 5904395 3756135..3758000 1 NC_010334.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3758000 5904395 Shal_3080 Shewanella halifaxensis HAW-EB4 1-deoxy-D-xylulose-5-phosphate synthase YP_001675287.1 3756135 D 458817 CDS YP_001675288.1 167624994 5904324 complement(3758119..3758721) 1 NC_010334.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 3758721 5904324 Shal_3081 Shewanella halifaxensis HAW-EB4 heat shock protein GrpE YP_001675288.1 3758119 R 458817 CDS YP_001675289.1 167624995 5904325 3758770..3759699 1 NC_010334.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3759699 ppnK 5904325 ppnK Shewanella halifaxensis HAW-EB4 inorganic polyphosphate/ATP-NAD kinase YP_001675289.1 3758770 D 458817 CDS YP_001675290.1 167624996 5903325 3760423..3762066 1 NC_010334.1 PFAM: L-lactate permease; KEGG: slo:Shew_3135 L-lactate permease; L-lactate permease 3762066 5903325 Shal_3083 Shewanella halifaxensis HAW-EB4 L-lactate permease YP_001675290.1 3760423 D 458817 CDS YP_001675291.1 167624997 5903326 3762170..3764989 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: shn:Shewana3_2905 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 3764989 5903326 Shal_3084 Shewanella halifaxensis HAW-EB4 FAD linked oxidase domain-containing protein YP_001675291.1 3762170 D 458817 CDS YP_001675292.1 167624998 5904198 3765370..3766113 1 NC_010334.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: slo:Shew_3004 protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein 3766113 5904198 Shal_3085 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675292.1 3765370 D 458817 CDS YP_001675293.1 167624999 5904199 3766122..3767495 1 NC_010334.1 PFAM: protein of unknown function DUF162; KEGG: slo:Shew_3005 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hypothetical protein 3767495 5904199 Shal_3086 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675293.1 3766122 D 458817 CDS YP_001675294.1 167625000 5903263 3767499..3768068 1 NC_010334.1 PFAM: protein of unknown function DUF162; KEGG: shm:Shewmr7_2816 protein of unknown function DUF162; hypothetical protein 3768068 5903263 Shal_3087 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675294.1 3767499 D 458817 CDS YP_001675295.1 167625001 5903264 complement(3768156..3769301) 1 NC_010334.1 TIGRFAM: TonB family protein; KEGG: spc:Sputcn32_0632 TonB family protein; TonB family protein 3769301 5903264 Shal_3088 Shewanella halifaxensis HAW-EB4 TonB family protein YP_001675295.1 3768156 R 458817 CDS YP_001675296.1 167625002 5902669 complement(3769546..3770922) 1 NC_010334.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO_1506 MATE efflux family protein; MATE efflux family protein 3770922 5902669 Shal_3089 Shewanella halifaxensis HAW-EB4 MATE efflux family protein YP_001675296.1 3769546 R 458817 CDS YP_001675297.1 167625003 5902670 complement(3771037..3772146) 1 NC_010334.1 PFAM: cobalamin synthesis protein P47K; KEGG: spc:Sputcn32_1255 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K 3772146 5902670 Shal_3090 Shewanella halifaxensis HAW-EB4 cobalamin synthesis protein P47K YP_001675297.1 3771037 R 458817 CDS YP_001675298.1 167625004 5907053 complement(3772289..3772624) 1 NC_010334.1 KEGG: gsu:GSU0757 lipoprotein, putative; hypothetical protein 3772624 5907053 Shal_3091 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675298.1 3772289 R 458817 CDS YP_001675299.1 167625005 5907054 complement(3772671..3772838) 1 NC_010334.1 KEGG: cps:CPS_2486 hypothetical protein; hypothetical protein 3772838 5907054 Shal_3092 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675299.1 3772671 R 458817 CDS YP_001675300.1 167625006 5902974 complement(3773021..3774445) 1 NC_010334.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shw:Sputw3181_2850 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 3774445 5902974 Shal_3093 Shewanella halifaxensis HAW-EB4 DEAD/DEAH box helicase YP_001675300.1 3773021 R 458817 CDS YP_001675301.1 167625007 5902975 complement(3774461..3777514) 1 NC_010334.1 KEGG: slo:Shew_2778 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3777514 5902975 Shal_3094 Shewanella halifaxensis HAW-EB4 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001675301.1 3774461 R 458817 CDS YP_001675302.1 167625008 5902711 complement(3777992..3778432) 1 NC_010334.1 PFAM: OsmC family protein; KEGG: shn:Shewana3_1075 OsmC family protein; OsmC family protein 3778432 5902711 Shal_3095 Shewanella halifaxensis HAW-EB4 OsmC family protein YP_001675302.1 3777992 R 458817 CDS YP_001675303.1 167625009 5902655 3778886..3779362 1 NC_010334.1 PFAM: thioesterase superfamily protein; KEGG: slo:Shew_2780 thioesterase superfamily protein; thioesterase superfamily protein 3779362 5902655 Shal_3097 Shewanella halifaxensis HAW-EB4 thioesterase superfamily protein YP_001675303.1 3778886 D 458817 CDS YP_001675304.1 167625010 5902656 complement(3779437..3780912) 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: spc:Sputcn32_2800 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 3780912 5902656 Shal_3098 Shewanella halifaxensis HAW-EB4 diguanylate cyclase/phosphodiesterase YP_001675304.1 3779437 R 458817 CDS YP_001675305.1 167625011 5903013 complement(3781038..3781880) 1 NC_010334.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: saz:Sama_1005 putative signal transduction protein; putative signal transduction protein 3781880 5903013 Shal_3099 Shewanella halifaxensis HAW-EB4 putative signal transduction protein YP_001675305.1 3781038 R 458817 CDS YP_001675306.1 167625012 5903014 3782169..3783536 1 NC_010334.1 PFAM: peptidase U32; KEGG: sfr:Sfri_1022 peptidase U32; peptidase U32 3783536 5903014 Shal_3100 Shewanella halifaxensis HAW-EB4 peptidase U32 YP_001675306.1 3782169 D 458817 CDS YP_001675307.1 167625013 5904821 complement(3783660..3784916) 1 NC_010334.1 PFAM: Carbohydrate-selective porin OprB; KEGG: cps:CPS_0267 hypothetical protein; carbohydrate-selective porin OprB 3784916 5904821 Shal_3101 Shewanella halifaxensis HAW-EB4 carbohydrate-selective porin OprB YP_001675307.1 3783660 R 458817 CDS YP_001675308.1 167625014 5904822 complement(3784964..3785698) 1 NC_010334.1 KEGG: vha:VIBHAR_05705 hypothetical protein; hypothetical protein 3785698 5904822 Shal_3102 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675308.1 3784964 R 458817 CDS YP_001675309.1 167625015 5904758 complement(3785914..3786732) 1 NC_010334.1 KEGG: vha:VIBHAR_06184 hypothetical protein; hypothetical protein 3786732 5904758 Shal_3103 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675309.1 3785914 R 458817 CDS YP_001675310.1 167625016 5904759 complement(3786729..3787292) 1 NC_010334.1 KEGG: slo:Shew_0983 amidohydrolase; amidohydrolase 3787292 5904759 Shal_3104 Shewanella halifaxensis HAW-EB4 amidohydrolase YP_001675310.1 3786729 R 458817 CDS YP_001675311.1 167625017 5904666 complement(3787532..3788542) 1 NC_010334.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ppr:PBPRB0224 hypothetical protein; AraC family transcriptional regulator 3788542 5904666 Shal_3105 Shewanella halifaxensis HAW-EB4 AraC family transcriptional regulator YP_001675311.1 3787532 R 458817 CDS YP_001675312.1 167625018 5904667 3788813..3789070 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_2785 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3789070 5904667 Shal_3106 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001675312.1 3788813 D 458817 CDS YP_001675313.1 167625019 5904811 3789301..3791019 1 NC_010334.1 PFAM: pseudouridine synthase; KEGG: slo:Shew_2529 pseudouridine synthase; pseudouridine synthase 3791019 5904811 Shal_3107 Shewanella halifaxensis HAW-EB4 pseudouridine synthase YP_001675313.1 3789301 D 458817 CDS YP_001675314.1 167625020 5904812 complement(3791185..3791697) 1 NC_010334.1 PFAM: Sterol-binding domain protein; KEGG: shm:Shewmr7_1134 sterol-binding domain protein; sterol-binding domain-containing protein 3791697 5904812 Shal_3108 Shewanella halifaxensis HAW-EB4 sterol-binding domain-containing protein YP_001675314.1 3791185 R 458817 CDS YP_001675315.1 167625021 5904976 3791830..3792831 1 NC_010334.1 PFAM: peptidase U32; KEGG: slo:Shew_2787 peptidase U32; peptidase U32 3792831 5904976 Shal_3109 Shewanella halifaxensis HAW-EB4 peptidase U32 YP_001675315.1 3791830 D 458817 CDS YP_001675316.1 167625022 5904977 3792841..3793698 1 NC_010334.1 PFAM: peptidase U32; KEGG: slo:Shew_2788 peptidase U32; peptidase U32 3793698 5904977 Shal_3110 Shewanella halifaxensis HAW-EB4 peptidase U32 YP_001675316.1 3792841 D 458817 CDS YP_001675317.1 167625023 5905148 3794213..3795346 1 NC_010334.1 TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sfr:Sfri_3427 alcohol dehydrogenase GroES domain protein; S-(hydroxymethyl)glutathione dehydrogenase 3795346 5905148 Shal_3111 Shewanella halifaxensis HAW-EB4 S-(hydroxymethyl)glutathione dehydrogenase YP_001675317.1 3794213 D 458817 CDS YP_001675318.1 167625024 5905149 complement(3795554..3796258) 1 NC_010334.1 KEGG: shn:Shewana3_1063 hypothetical protein; hypothetical protein 3796258 5905149 Shal_3112 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675318.1 3795554 R 458817 CDS YP_001675319.1 167625025 5905176 3796741..3797064 1 NC_010334.1 KEGG: shw:Sputw3181_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3797064 5905176 Shal_3113 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis sensory transducer YP_001675319.1 3796741 D 458817 CDS YP_001675320.1 167625026 5905177 3797422..3798777 1 NC_010334.1 PFAM: nucleoside recognition domain protein; KEGG: slo:Shew_2790 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 3798777 5905177 Shal_3114 Shewanella halifaxensis HAW-EB4 nucleoside recognition domain-containing protein YP_001675320.1 3797422 D 458817 CDS YP_001675321.1 167625027 5903406 complement(3799220..3800578) 1 NC_010334.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: slo:Shew_2795 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 3800578 5903406 Shal_3115 Shewanella halifaxensis HAW-EB4 xanthine/uracil/vitamin C permease YP_001675321.1 3799220 R 458817 CDS YP_001675322.1 167625028 5903407 complement(3801028..3802341) 1 NC_010334.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sbl:Sbal_1252 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 3802341 5903407 Shal_3116 Shewanella halifaxensis HAW-EB4 DEAD/DEAH box helicase YP_001675322.1 3801028 R 458817 CDS YP_001675323.1 167625029 5905247 3802509..3803696 1 NC_010334.1 KEGG: vfi:VF2363 glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde 3-phosphate dehydrogenase 3803696 5905247 Shal_3117 Shewanella halifaxensis HAW-EB4 glyceraldehyde 3-phosphate dehydrogenase YP_001675323.1 3802509 D 458817 CDS YP_001675324.1 167625030 5905248 3803894..3804439 1 NC_010334.1 KEGG: vvy:VVA1400 hypothetical protein; hypothetical protein 3804439 5905248 Shal_3118 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675324.1 3803894 D 458817 CDS YP_001675325.1 167625031 5905476 3804599..3804973 1 NC_010334.1 PFAM: type IV pilus assembly PilZ; KEGG: saz:Sama_0982 hypothetical protein; type IV pilus assembly PilZ 3804973 5905476 Shal_3119 Shewanella halifaxensis HAW-EB4 type IV pilus assembly PilZ YP_001675325.1 3804599 D 458817 CDS YP_001675326.1 167625032 5905477 complement(3805066..3806439) 1 NC_010334.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 3806439 5905477 Shal_3120 Shewanella halifaxensis HAW-EB4 DNA repair protein RadA YP_001675326.1 3805066 R 458817 CDS YP_001675327.1 167625033 5905408 3806592..3809033 1 NC_010334.1 PFAM: type IV pilus assembly PilZ; KEGG: slo:Shew_2808 type IV pilus assembly PilZ; type IV pilus assembly PilZ 3809033 5905408 Shal_3121 Shewanella halifaxensis HAW-EB4 type IV pilus assembly PilZ YP_001675327.1 3806592 D 458817 CDS YP_001675328.1 167625034 5905409 complement(3809127..3809579) 1 NC_010334.1 KEGG: vco:VC0395_A1179 hypothetical protein; hypothetical protein 3809579 5905409 Shal_3122 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675328.1 3809127 R 458817 CDS YP_001675329.1 167625035 5905498 3809998..3810729 1 NC_010334.1 PFAM: SNARE associated Golgi protein; KEGG: vfi:VFA0471 DedA family protein; hypothetical protein 3810729 5905498 Shal_3123 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675329.1 3809998 D 458817 CDS YP_001675330.1 167625036 5905499 complement(3810870..3812696) 1 NC_010334.1 PFAM: sulfatase; KEGG: shw:Sputw3181_0059 sulfatase; sulfatase 3812696 5905499 Shal_3124 Shewanella halifaxensis HAW-EB4 sulfatase YP_001675330.1 3810870 R 458817 CDS YP_001675331.1 167625037 5905528 complement(3812968..3813915) 1 NC_010334.1 PFAM: Polysulphide reductase NrfD; KEGG: shm:Shewmr7_0509 polysulphide reductase, NrfD; polysulfide reductase NrfD 3813915 5905528 Shal_3125 Shewanella halifaxensis HAW-EB4 polysulfide reductase NrfD YP_001675331.1 3812968 R 458817 CDS YP_001675332.1 167625038 5905529 complement(3813912..3814484) 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shn:Shewana3_3618 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3814484 5905529 Shal_3126 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001675332.1 3813912 R 458817 CDS YP_001675333.1 167625039 5905523 complement(3814497..3816773) 1 NC_010334.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sbm:Shew185_0531 molybdopterin oxidoreductase; molybdopterin oxidoreductase 3816773 5905523 Shal_3127 Shewanella halifaxensis HAW-EB4 molybdopterin oxidoreductase YP_001675333.1 3814497 R 458817 CDS YP_001675334.1 167625040 5905524 complement(3817116..3818900) 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: shn:Shewana3_3696 ATP-binding region, ATPase domain protein domain protein; histidine kinase 3818900 5905524 Shal_3128 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001675334.1 3817116 R 458817 CDS YP_001675335.1 167625041 5905545 3819129..3819740 1 NC_010334.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: shw:Sputw3181_3638 response regulator receiver protein; two component LuxR family transcriptional regulator 3819740 5905545 Shal_3129 Shewanella halifaxensis HAW-EB4 two component LuxR family transcriptional regulator YP_001675335.1 3819129 D 458817 CDS YP_001675336.1 167625042 5905546 complement(3819844..3820752) 1 NC_010334.1 KEGG: she:Shewmr4_1043 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3820752 5905546 Shal_3130 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase fold protein YP_001675336.1 3819844 R 458817 CDS YP_001675337.1 167625043 5905793 complement(3820991..3821998) 1 NC_010334.1 KEGG: sbm:Shew185_3223 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB 3821998 5905793 Shal_3131 Shewanella halifaxensis HAW-EB4 phosphoserine phosphatase SerB YP_001675337.1 3820991 R 458817 CDS YP_001675338.1 167625044 5905794 3822077..3823558 1 NC_010334.1 KEGG: she:Shewmr4_1041 membrane protein; membrane protein 3823558 5905794 Shal_3132 Shewanella halifaxensis HAW-EB4 membrane protein YP_001675338.1 3822077 D 458817 CDS YP_001675339.1 167625045 5905686 complement(3823670..3824380) 1 NC_010334.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 3824380 deoD 5905686 deoD Shewanella halifaxensis HAW-EB4 purine nucleoside phosphorylase YP_001675339.1 3823670 R 458817 CDS YP_001675340.1 167625046 5905687 complement(3824481..3825701) 1 NC_010334.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 3825701 5905687 Shal_3134 Shewanella halifaxensis HAW-EB4 phosphopentomutase YP_001675340.1 3824481 R 458817 CDS YP_001675341.1 167625047 5905584 complement(3825715..3827046) 1 NC_010334.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 3827046 deoA 5905584 deoA Shewanella halifaxensis HAW-EB4 thymidine phosphorylase YP_001675341.1 3825715 R 458817 CDS YP_001675342.1 167625048 5905585 complement(3827209..3827982) 1 NC_010334.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 3827982 5905585 Shal_3136 Shewanella halifaxensis HAW-EB4 deoxyribose-phosphate aldolase YP_001675342.1 3827209 R 458817 CDS YP_001675343.1 167625049 5906519 complement(3828561..3829421) 1 NC_010334.1 PFAM: nucleoside-specific channel-forming protein Tsx; KEGG: son:SO_1215 outer membrane protein OmpK, putative; nucleoside-specific channel-forming protein Tsx 3829421 5906519 Shal_3137 Shewanella halifaxensis HAW-EB4 nucleoside-specific channel-forming protein Tsx YP_001675343.1 3828561 R 458817 CDS YP_001675344.1 167625050 5906520 complement(3829758..3831017) 1 NC_010334.1 TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: sbm:Shew185_3232 nucleoside transporter; nucleoside transporter 3831017 5906520 Shal_3138 Shewanella halifaxensis HAW-EB4 nucleoside transporter YP_001675344.1 3829758 R 458817 CDS YP_001675345.1 167625051 5906478 complement(3831197..3831970) 1 NC_010334.1 PFAM: TatD-related deoxyribonuclease; KEGG: saz:Sama_0970 TatD-related deoxyribonuclease; TatD-like deoxyribonuclease 3831970 5906478 Shal_3139 Shewanella halifaxensis HAW-EB4 TatD-like deoxyribonuclease YP_001675345.1 3831197 R 458817 CDS YP_001675346.1 167625052 5906479 complement(3832323..3833903) 1 NC_010334.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 3833903 prfC 5906479 prfC Shewanella halifaxensis HAW-EB4 peptide chain release factor 3 YP_001675346.1 3832323 R 458817 CDS YP_001675347.1 167625053 5906119 complement(3834066..3834959) 1 NC_010334.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 3834959 5906119 Shal_3141 Shewanella halifaxensis HAW-EB4 lipoprotein NlpI YP_001675347.1 3834066 R 458817 CDS YP_001675348.1 167625054 5906120 complement(3835129..3837243) 1 NC_010334.1 KEGG: slo:Shew_2822 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 3837243 5906120 Shal_3142 Shewanella halifaxensis HAW-EB4 polynucleotide phosphorylase/polyadenylase YP_001675348.1 3835129 R 458817 CDS YP_001675349.1 167625055 5906281 3837437..3839482 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sbm:Shew185_3276 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 3839482 5906281 Shal_3143 Shewanella halifaxensis HAW-EB4 diguanylate cyclase/phosphodiesterase YP_001675349.1 3837437 D 458817 CDS YP_001675350.1 167625056 5906282 complement(3839546..3839815) 1 NC_010334.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 3839815 rpsO 5906282 rpsO Shewanella halifaxensis HAW-EB4 30S ribosomal protein S15 YP_001675350.1 3839546 R 458817 CDS YP_001675351.1 167625057 5906221 complement(3839936..3840883) 1 NC_010334.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 3840883 truB 5906221 truB Shewanella halifaxensis HAW-EB4 tRNA pseudouridine synthase B YP_001675351.1 3839936 R 458817 CDS YP_001675352.1 167625058 5906222 complement(3840883..3841311) 1 NC_010334.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 3841311 rbfA 5906222 rbfA Shewanella halifaxensis HAW-EB4 ribosome-binding factor A YP_001675352.1 3840883 R 458817 CDS YP_001675353.1 167625059 5905368 complement(3841373..3844054) 1 NC_010334.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 3844054 infB 5905368 infB Shewanella halifaxensis HAW-EB4 translation initiation factor IF-2 YP_001675353.1 3841373 R 458817 CDS YP_001675354.1 167625060 5905369 complement(3844083..3845582) 1 NC_010334.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 3845582 nusA 5905369 nusA Shewanella halifaxensis HAW-EB4 transcription elongation factor NusA YP_001675354.1 3844083 R 458817 CDS YP_001675355.1 167625061 5904691 complement(3845610..3846065) 1 NC_010334.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 3846065 5904691 Shal_3149 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675355.1 3845610 R 458817 CDS YP_001675356.1 167625062 5905109 complement(3846607..3846942) 1 NC_010334.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: slo:Shew_2830 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 3846942 secG 5905109 secG Shewanella halifaxensis HAW-EB4 preprotein translocase subunit SecG YP_001675356.1 3846607 R 458817 CDS YP_001675357.1 167625063 5905772 complement(3846944..3847726) 1 NC_010334.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 3847726 5905772 Shal_3151 Shewanella halifaxensis HAW-EB4 triosephosphate isomerase YP_001675357.1 3846944 R 458817 CDS YP_001675358.1 167625064 5905773 complement(3847936..3849273) 1 NC_010334.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 3849273 glmM 5905773 glmM Shewanella halifaxensis HAW-EB4 phosphoglucosamine mutase YP_001675358.1 3847936 R 458817 CDS YP_001675359.1 167625065 5905398 complement(3849355..3850143) 1 NC_010334.1 KEGG: shm:Shewmr7_1085 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 3850143 5905398 Shal_3153 Shewanella halifaxensis HAW-EB4 dihydropteroate synthase YP_001675359.1 3849355 R 458817 CDS YP_001675360.1 167625066 5905399 complement(3850256..3852208) 1 NC_010334.1 KEGG: slo:Shew_2834 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 3852208 5905399 Shal_3154 Shewanella halifaxensis HAW-EB4 ATP-dependent metalloprotease FtsH YP_001675360.1 3850256 R 458817 CDS YP_001675361.1 167625067 5903384 complement(3852269..3852898) 1 NC_010334.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 3852898 rrmJ 5903384 rrmJ Shewanella halifaxensis HAW-EB4 23S rRNA methyltransferase J YP_001675361.1 3852269 R 458817 CDS YP_001675362.1 167625068 5903385 3852992..3853291 1 NC_010334.1 PFAM: protein of unknown function UPF0044; KEGG: slo:Shew_2836 protein of unknown function UPF0044; hypothetical protein 3853291 5903385 Shal_3156 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675362.1 3852992 D 458817 CDS YP_001675363.1 167625069 5902762 complement(3853673..3854581) 1 NC_010334.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sbm:Shew185_3291 protein-export membrane protein SecF; protein-export membrane protein SecF 3854581 5902762 Shal_3157 Shewanella halifaxensis HAW-EB4 protein-export membrane protein SecF YP_001675363.1 3853673 R 458817 CDS YP_001675364.1 167625070 5902763 complement(3854583..3856397) 1 NC_010334.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 3856397 secD 5902763 secD Shewanella halifaxensis HAW-EB4 preprotein translocase subunit SecD YP_001675364.1 3854583 R 458817 CDS YP_001675365.1 167625071 5903466 complement(3856813..3857304) 1 NC_010334.1 KEGG: sfr:Sfri_0978 hypothetical protein; hypothetical protein 3857304 5903466 Shal_3159 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675365.1 3856813 R 458817 CDS YP_001675366.1 167625072 5903467 complement(3857497..3857958) 1 NC_010334.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: shn:Shewana3_1017 transcription elongation factor GreA; transcription elongation factor GreA 3857958 5903467 Shal_3160 Shewanella halifaxensis HAW-EB4 transcription elongation factor GreA YP_001675366.1 3857497 R 458817 CDS YP_001675367.1 167625073 5903230 complement(3858297..3861518) 1 NC_010334.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 3861518 carB 5903230 carB Shewanella halifaxensis HAW-EB4 carbamoyl phosphate synthase large subunit YP_001675367.1 3858297 R 458817 CDS YP_001675368.1 167625074 5903231 complement(3861547..3862692) 1 NC_010334.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 3862692 5903231 Shal_3162 Shewanella halifaxensis HAW-EB4 carbamoyl phosphate synthase small subunit YP_001675368.1 3861547 R 458817 CDS YP_001675369.1 167625075 5902891 complement(3862895..3863710) 1 NC_010334.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 3863710 5902891 Shal_3163 Shewanella halifaxensis HAW-EB4 dihydrodipicolinate reductase YP_001675369.1 3862895 R 458817 CDS YP_001675370.1 167625076 5902892 complement(3863774..3864391) 1 NC_010334.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_2841 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 3864391 5902892 Shal_3164 Shewanella halifaxensis HAW-EB4 FKBP-type peptidylprolyl isomerase YP_001675370.1 3863774 R 458817 CDS YP_001675371.1 167625077 5904823 complement(3864475..3865275) 1 NC_010334.1 PFAM: peptidase M48 Ste24p; KEGG: shn:Shewana3_0964 peptidase M48, Ste24p; peptidase M48 Ste24p 3865275 5904823 Shal_3165 Shewanella halifaxensis HAW-EB4 peptidase M48 Ste24p YP_001675371.1 3864475 R 458817 CDS YP_001675372.1 167625078 5904824 complement(3865383..3866513) 1 NC_010334.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 3866513 5904824 Shal_3166 Shewanella halifaxensis HAW-EB4 chaperone protein DnaJ YP_001675372.1 3865383 R 458817 CDS YP_001675373.1 167625079 5904807 complement(3866609..3868525) 1 NC_010334.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 3868525 dnaK 5904807 dnaK Shewanella halifaxensis HAW-EB4 molecular chaperone DnaK YP_001675373.1 3866609 R 458817 CDS YP_001675374.1 167625080 5904808 3868833..3869747 1 NC_010334.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: slo:Shew_2845 protein of unknown function DUF6, transmembrane; hypothetical protein 3869747 5904808 Shal_3168 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675374.1 3868833 D 458817 CDS YP_001675375.1 167625081 5904756 complement(3870319..3871587) 1 NC_010334.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 3871587 proA 5904756 proA Shewanella halifaxensis HAW-EB4 gamma-glutamyl phosphate reductase YP_001675375.1 3870319 R 458817 CDS YP_001675376.1 167625082 5904757 complement(3871584..3872702) 1 NC_010334.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 3872702 5904757 Shal_3170 Shewanella halifaxensis HAW-EB4 gamma-glutamyl kinase YP_001675376.1 3871584 R 458817 CDS YP_001675377.1 167625083 5903306 complement(3872971..3874260) 1 NC_010334.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: saz:Sama_2517 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 3874260 5903306 Shal_3171 Shewanella halifaxensis HAW-EB4 xanthine/uracil/vitamin C permease YP_001675377.1 3872971 R 458817 CDS YP_001675378.1 167625084 5903307 complement(3875325..3877370) 1 NC_010334.1 PFAM: pentapeptide repeat protein; KEGG: vpa:VPA1301 hypothetical protein; pentapeptide repeat-containing protein 3877370 5903307 Shal_3172 Shewanella halifaxensis HAW-EB4 pentapeptide repeat-containing protein YP_001675378.1 3875325 R 458817 CDS YP_001675379.1 167625085 5904485 complement(3877927..3878904) 1 NC_010334.1 PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein 3878904 5904485 Shal_3173 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675379.1 3877927 R 458817 CDS YP_001675380.1 167625086 5904486 complement(3879332..3879430) 1 NC_010334.1 KEGG: shw:Sputw3181_3220 hypothetical protein; hypothetical protein 3879430 5904486 Shal_3174 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675380.1 3879332 R 458817 CDS YP_001675381.1 167625087 5904413 3880735..3882195 1 NC_010334.1 KEGG: slo:Shew_2852 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase 3882195 5904413 Shal_3175 Shewanella halifaxensis HAW-EB4 aminoacyl-histidine dipeptidase YP_001675381.1 3880735 D 458817 CDS YP_001675382.1 167625088 5904414 complement(3882284..3883360) 1 NC_010334.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 3883360 5904414 Shal_3176 Shewanella halifaxensis HAW-EB4 DNA polymerase IV YP_001675382.1 3882284 R 458817 CDS YP_001675383.1 167625089 5904390 complement(3883489..3883737) 1 NC_010334.1 hypothetical protein 3883737 5904390 Shal_3177 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675383.1 3883489 R 458817 CDS YP_001675384.1 167625090 5904391 complement(3883961..3884428) 1 NC_010334.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: slo:Shew_2872 bacterioferritin; bacterioferritin 3884428 5904391 Shal_3178 Shewanella halifaxensis HAW-EB4 bacterioferritin YP_001675384.1 3883961 R 458817 CDS YP_001675385.1 167625091 5903343 complement(3884441..3884908) 1 NC_010334.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: sdn:Sden_0990 bacterioferritin; bacterioferritin 3884908 5903343 Shal_3179 Shewanella halifaxensis HAW-EB4 bacterioferritin YP_001675385.1 3884441 R 458817 CDS YP_001675386.1 167625092 5903344 complement(3885282..3885503) 1 NC_010334.1 PFAM: protein of unknown function DUF539; KEGG: slo:Shew_2874 protein of unknown function DUF539; hypothetical protein 3885503 5903344 Shal_3180 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675386.1 3885282 R 458817 CDS YP_001675387.1 167625093 5902860 complement(3885516..3886532) 1 NC_010334.1 PFAM: ApbE family lipoprotein; KEGG: sbm:Shew185_3432 ApbE family lipoprotein; ApbE family lipoprotein 3886532 5902860 Shal_3181 Shewanella halifaxensis HAW-EB4 ApbE family lipoprotein YP_001675387.1 3885516 R 458817 CDS YP_001675388.1 167625094 5902861 complement(3886662..3887909) 1 NC_010334.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 3887909 5902861 Shal_3182 Shewanella halifaxensis HAW-EB4 Na(+)-translocating NADH-quinone reductase subunit F YP_001675388.1 3886662 R 458817 CDS YP_001675389.1 167625095 5903396 complement(3887955..3888563) 1 NC_010334.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 3888563 5903396 Shal_3183 Shewanella halifaxensis HAW-EB4 Na(+)-translocating NADH-quinone reductase subunit E YP_001675389.1 3887955 R 458817 CDS YP_001675390.1 167625096 5903397 complement(3888569..3889201) 1 NC_010334.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 3889201 5903397 Shal_3184 Shewanella halifaxensis HAW-EB4 Na(+)-translocating NADH-quinone reductase subunit D YP_001675390.1 3888569 R 458817 CDS YP_001675391.1 167625097 5903208 complement(3889201..3889998) 1 NC_010334.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 3889998 5903208 Shal_3185 Shewanella halifaxensis HAW-EB4 Na(+)-translocating NADH-quinone reductase subunit C YP_001675391.1 3889201 R 458817 CDS YP_001675392.1 167625098 5903209 complement(3889991..3891190) 1 NC_010334.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 3891190 5903209 Shal_3186 Shewanella halifaxensis HAW-EB4 Na(+)-translocating NADH-quinone reductase subunit B YP_001675392.1 3889991 R 458817 CDS YP_001675393.1 167625099 5903826 complement(3891190..3892530) 1 NC_010334.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 3892530 5903826 Shal_3187 Shewanella halifaxensis HAW-EB4 Na(+)-translocating NADH-quinone reductase subunit A YP_001675393.1 3891190 R 458817 CDS YP_001675394.1 167625100 5903827 complement(3893211..3893720) 1 NC_010334.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 3893720 5903827 Shal_3188 Shewanella halifaxensis HAW-EB4 S-ribosylhomocysteinase YP_001675394.1 3893211 R 458817 CDS YP_001675395.1 167625101 5903278 complement(3894066..3894386) 1 NC_010334.1 PFAM: BolA family protein; KEGG: slo:Shew_2883 BolA family protein; BolA family protein 3894386 5903278 Shal_3189 Shewanella halifaxensis HAW-EB4 BolA family protein YP_001675395.1 3894066 R 458817 CDS YP_001675396.1 167625102 5903279 complement(3894495..3895169) 1 NC_010334.1 KEGG: slo:Shew_2885 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 3895169 5903279 Shal_3190 Shewanella halifaxensis HAW-EB4 2OG-Fe(II) oxygenase YP_001675396.1 3894495 R 458817 CDS YP_001675397.1 167625103 5903290 3895241..3896539 1 NC_010334.1 PFAM: methyltransferase small; KEGG: shw:Sputw3181_3242 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 3896539 5903290 Shal_3191 Shewanella halifaxensis HAW-EB4 rRNA (guanine-N(2)-)-methyltransferase YP_001675397.1 3895241 D 458817 CDS YP_001675398.1 167625104 5903291 complement(3896646..3897710) 1 NC_010334.1 KEGG: shw:Sputw3181_3349 hypothetical protein; hypothetical protein 3897710 5903291 Shal_3192 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675398.1 3896646 R 458817 CDS YP_001675399.1 167625105 5904948 complement(3897938..3898495) 1 NC_010334.1 KEGG: shm:Shewmr7_0816 OmpA domain protein transmembrane region-containing protein; OmpA domain-containing protein 3898495 5904948 Shal_3193 Shewanella halifaxensis HAW-EB4 OmpA domain-containing protein YP_001675399.1 3897938 R 458817 CDS YP_001675400.1 167625106 5904949 3898703..3899275 1 NC_010334.1 PFAM: Uncharacterized lipoprotein; KEGG: slo:Shew_2889 uncharacterized lipoprotein; hypothetical protein 3899275 5904949 Shal_3194 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675400.1 3898703 D 458817 CDS YP_001675401.1 167625107 5905047 3899307..3899903 1 NC_010334.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: sfr:Sfri_3112 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3899903 5905047 Shal_3195 Shewanella halifaxensis HAW-EB4 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001675401.1 3899307 D 458817 CDS YP_001675402.1 167625108 5905048 3900032..3900352 1 NC_010334.1 KEGG: slo:Shew_2891 hypothetical protein; hypothetical protein 3900352 5905048 Shal_3196 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675402.1 3900032 D 458817 CDS YP_001675403.1 167625109 5905105 3900568..3901998 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_2892 major facilitator superfamily MFS_1; major facilitator transporter 3901998 5905105 Shal_3197 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001675403.1 3900568 D 458817 CDS YP_001675404.1 167625110 5905106 complement(3902158..3902643) 1 NC_010334.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 3902643 5905106 Shal_3198 Shewanella halifaxensis HAW-EB4 putative nucleotide-binding protein YP_001675404.1 3902158 R 458817 CDS YP_001675405.1 167625111 5905129 3902745..3903173 1 NC_010334.1 PFAM: VanZ family protein; KEGG: shw:Sputw3181_3356 VanZ family protein; VanZ family protein 3903173 5905129 Shal_3199 Shewanella halifaxensis HAW-EB4 VanZ family protein YP_001675405.1 3902745 D 458817 CDS YP_001675406.1 167625112 5905130 3903180..3904151 1 NC_010334.1 KEGG: slo:Shew_2895 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 3904151 5905130 Shal_3200 Shewanella halifaxensis HAW-EB4 2-dehydropantoate 2-reductase YP_001675406.1 3903180 D 458817 CDS YP_001675407.1 167625113 5905300 3904326..3905822 1 NC_010334.1 PFAM: sodium:neurotransmitter symporter; KEGG: ppr:PBPRA1510 putative sodium-dependent transporter; sodium:neurotransmitter symporter 3905822 5905300 Shal_3201 Shewanella halifaxensis HAW-EB4 sodium:neurotransmitter symporter YP_001675407.1 3904326 D 458817 CDS YP_001675408.1 167625114 5905301 complement(3906052..3907254) 1 NC_010334.1 hypothetical protein 3907254 5905301 Shal_3202 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675408.1 3906052 R 458817 CDS YP_001675409.1 167625115 5905421 3907428..3908129 1 NC_010334.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: slo:Shew_2901 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 3908129 5905421 Shal_3203 Shewanella halifaxensis HAW-EB4 PA-phosphatase-like phosphoesterase YP_001675409.1 3907428 D 458817 CDS YP_001675410.1 167625116 5905422 complement(3908292..3908492) 1 NC_010334.1 hypothetical protein 3908492 5905422 Shal_3204 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675410.1 3908292 R 458817 CDS YP_001675411.1 167625117 5905419 complement(3908524..3910086) 1 NC_010334.1 PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; short chain fatty acid transporter; KEGG: saz:Sama_3423 transporter; putative transporter AbgT 3910086 5905419 Shal_3205 Shewanella halifaxensis HAW-EB4 putative transporter AbgT YP_001675411.1 3908524 R 458817 CDS YP_001675412.1 167625118 5905420 complement(3910297..3911145) 1 NC_010334.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 3911145 5905420 Shal_3206 Shewanella halifaxensis HAW-EB4 2-dehydro-3-deoxyphosphooctonate aldolase YP_001675412.1 3910297 R 458817 CDS YP_001675413.1 167625119 5905381 complement(3911215..3912483) 1 NC_010334.1 PFAM: protein of unknown function DUF819; KEGG: slo:Shew_2905 protein of unknown function DUF819; hypothetical protein 3912483 5905381 Shal_3207 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675413.1 3911215 R 458817 CDS YP_001675414.1 167625120 5905382 complement(3912689..3913477) 1 NC_010334.1 KEGG: slo:Shew_2906 hypothetical protein; hypothetical protein 3913477 5905382 Shal_3208 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675414.1 3912689 R 458817 CDS YP_001675415.1 167625121 5905565 complement(3913477..3913872) 1 NC_010334.1 PFAM: Invasion gene expression up-regulator SirB; KEGG: son:SO_3830 hypothetical protein; invasion gene expression up-regulator SirB 3913872 5905565 Shal_3209 Shewanella halifaxensis HAW-EB4 invasion gene expression up-regulator SirB YP_001675415.1 3913477 R 458817 CDS YP_001675416.1 167625122 5905566 complement(3914196..3915038) 1 NC_010334.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: slo:Shew_2911 modification methylase, HemK family; HemK family modification methylase 3915038 5905566 Shal_3210 Shewanella halifaxensis HAW-EB4 HemK family modification methylase YP_001675416.1 3914196 R 458817 CDS YP_001675417.1 167625123 5905573 complement(3915086..3916171) 1 NC_010334.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 3916171 prfA 5905573 prfA Shewanella halifaxensis HAW-EB4 peptide chain release factor 1 YP_001675417.1 3915086 R 458817 CDS YP_001675418.1 167625124 5905574 complement(3916185..3917435) 1 NC_010334.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 3917435 hemA 5905574 hemA Shewanella halifaxensis HAW-EB4 glutamyl-tRNA reductase YP_001675418.1 3916185 R 458817 CDS YP_001675419.1 167625125 5905504 3917705..3918364 1 NC_010334.1 PFAM: outer membrane lipoprotein LolB; KEGG: she:Shewmr4_3171 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 3918364 5905504 Shal_3213 Shewanella halifaxensis HAW-EB4 outer membrane lipoprotein LolB YP_001675419.1 3917705 D 458817 CDS YP_001675420.1 167625126 5905505 3918361..3919215 1 NC_010334.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3919215 ipk 5905505 ipk Shewanella halifaxensis HAW-EB4 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001675420.1 3918361 D 458817 CDS YP_001675421.1 167625127 5905516 3919253..3920227 1 NC_010334.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3920227 5905516 Shal_3215 Shewanella halifaxensis HAW-EB4 ribose-phosphate pyrophosphokinase YP_001675421.1 3919253 D 458817 CDS YP_001675422.1 167625128 5905517 complement(3920322..3920738) 1 NC_010334.1 KEGG: slo:Shew_2917 hypothetical protein; hypothetical protein 3920738 5905517 Shal_3216 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675422.1 3920322 R 458817 CDS YP_001675423.1 167625129 5905760 complement(3920784..3921242) 1 NC_010334.1 KEGG: slo:Shew_2918 hypothetical protein; hypothetical protein 3921242 5905760 Shal_3217 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675423.1 3920784 R 458817 CDS YP_001675424.1 167625130 5906134 complement(3923358..3924449) 1 NC_010334.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 3924449 5906134 Shal_3218 Shewanella halifaxensis HAW-EB4 GTP-dependent nucleic acid-binding protein EngD YP_001675424.1 3923358 R 458817 CDS YP_001675425.1 167625131 5907004 complement(3924503..3925087) 1 NC_010334.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 3925087 5907004 Shal_3219 Shewanella halifaxensis HAW-EB4 peptidyl-tRNA hydrolase YP_001675425.1 3924503 R 458817 CDS YP_001675426.1 167625132 5907005 complement(3925399..3926598) 1 NC_010334.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: slo:Shew_2921 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 3926598 5907005 Shal_3220 Shewanella halifaxensis HAW-EB4 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_001675426.1 3925399 R 458817 CDS YP_001675427.1 167625133 5906843 3926937..3927251 1 NC_010334.1 KEGG: sbm:Shew185_3302 hypothetical protein; hypothetical protein 3927251 5906843 Shal_3221 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675427.1 3926937 D 458817 CDS YP_001675428.1 167625134 5906844 3927348..3928775 1 NC_010334.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3928775 5906844 Shal_3222 Shewanella halifaxensis HAW-EB4 (dimethylallyl)adenosine tRNA methylthiotransferase YP_001675428.1 3927348 D 458817 CDS YP_001675429.1 167625135 5906743 3928957..3929997 1 NC_010334.1 PFAM: PhoH family protein; KEGG: slo:Shew_2924 PhoH family protein; PhoH family protein 3929997 5906743 Shal_3223 Shewanella halifaxensis HAW-EB4 PhoH family protein YP_001675429.1 3928957 D 458817 CDS YP_001675430.1 167625136 5906744 3929990..3930460 1 NC_010334.1 PFAM: protein of unknown function UPF0054; KEGG: sdn:Sden_0813 protein of unknown function UPF0054; putative metalloprotease 3930460 5906744 Shal_3224 Shewanella halifaxensis HAW-EB4 putative metalloprotease YP_001675430.1 3929990 D 458817 CDS YP_001675431.1 167625137 5906725 3930470..3931369 1 NC_010334.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: slo:Shew_2926 CBS domain containing protein; hypothetical protein 3931369 5906725 Shal_3225 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675431.1 3930470 D 458817 CDS YP_001675432.1 167625138 5906726 3931408..3932961 1 NC_010334.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 3932961 lnt 5906726 lnt Shewanella halifaxensis HAW-EB4 apolipoprotein N-acyltransferase YP_001675432.1 3931408 D 458817 CDS YP_001675433.1 167625139 5906672 complement(3933107..3933607) 1 NC_010334.1 PFAM: protein of unknown function DUF1451; KEGG: slo:Shew_2928 protein of unknown function DUF1451; hypothetical protein 3933607 5906672 Shal_3227 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675433.1 3933107 R 458817 CDS YP_001675434.1 167625140 5906673 3933701..3936307 1 NC_010334.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3936307 leuS 5906673 leuS Shewanella halifaxensis HAW-EB4 leucyl-tRNA synthetase YP_001675434.1 3933701 D 458817 CDS YP_001675435.1 167625141 5906580 3936341..3936835 1 NC_010334.1 PFAM: Rare lipoprotein B; KEGG: slo:Shew_2930 rare lipoprotein B; rare lipoprotein B 3936835 5906580 Shal_3229 Shewanella halifaxensis HAW-EB4 rare lipoprotein B YP_001675435.1 3936341 D 458817 CDS YP_001675436.1 167625142 5906581 3936835..3937866 1 NC_010334.1 KEGG: slo:Shew_2931 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; DNA polymerase III subunit delta 3937866 5906581 Shal_3230 Shewanella halifaxensis HAW-EB4 DNA polymerase III subunit delta YP_001675436.1 3936835 D 458817 CDS YP_001675437.1 167625143 5906466 3937885..3938535 1 NC_010334.1 KEGG: sbm:Shew185_3314 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 3938535 5906466 Shal_3231 Shewanella halifaxensis HAW-EB4 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_001675437.1 3937885 D 458817 CDS YP_001675438.1 167625144 5906467 3938634..3938963 1 NC_010334.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: sbm:Shew185_3315 iojap-like protein; iojap family protein 3938963 5906467 Shal_3232 Shewanella halifaxensis HAW-EB4 iojap family protein YP_001675438.1 3938634 D 458817 CDS YP_001675439.1 167625145 5906430 3938963..3939433 1 NC_010334.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3939433 5906430 Shal_3233 Shewanella halifaxensis HAW-EB4 rRNA large subunit methyltransferase YP_001675439.1 3938963 D 458817 CDS YP_001675440.1 167625146 5906431 3939518..3941371 1 NC_010334.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: slo:Shew_2935 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 3941371 5906431 Shal_3234 Shewanella halifaxensis HAW-EB4 peptidoglycan glycosyltransferase YP_001675440.1 3939518 D 458817 CDS YP_001675441.1 167625147 5906418 3941371..3942477 1 NC_010334.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: slo:Shew_2936 rod shape-determining protein RodA; rod shape-determining protein RodA 3942477 5906418 Shal_3235 Shewanella halifaxensis HAW-EB4 rod shape-determining protein RodA YP_001675441.1 3941371 D 458817 CDS YP_001675442.1 167625148 5906419 3942615..3943613 1 NC_010334.1 TIGRFAM: lytic murein transglycosylase B; KEGG: sbm:Shew185_3319 lytic murein transglycosylase B; lytic murein transglycosylase B 3943613 5906419 Shal_3236 Shewanella halifaxensis HAW-EB4 lytic murein transglycosylase B YP_001675442.1 3942615 D 458817 CDS YP_001675443.1 167625149 5906415 3943600..3944382 1 NC_010334.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: slo:Shew_2938 rare lipoprotein A; rare lipoprotein A 3944382 5906415 Shal_3237 Shewanella halifaxensis HAW-EB4 rare lipoprotein A YP_001675443.1 3943600 D 458817 CDS YP_001675444.1 167625150 5906416 3944487..3945659 1 NC_010334.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: slo:Shew_2939 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 3945659 5906416 Shal_3238 Shewanella halifaxensis HAW-EB4 serine-type D-Ala-D-Ala carboxypeptidase YP_001675444.1 3944487 D 458817 CDS YP_001675445.1 167625151 5906344 3945792..3946058 1 NC_010334.1 PFAM: protein of unknown function DUF493; KEGG: saz:Sama_2593 hypothetical protein; hypothetical protein 3946058 5906344 Shal_3239 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675445.1 3945792 D 458817 CDS YP_001675446.1 167625152 5906345 3946153..3946812 1 NC_010334.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 3946812 lipB 5906345 lipB Shewanella halifaxensis HAW-EB4 lipoate-protein ligase B YP_001675446.1 3946153 D 458817 CDS YP_001675447.1 167625153 5906311 3946805..3947770 1 NC_010334.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3947770 5906311 Shal_3241 Shewanella halifaxensis HAW-EB4 lipoyl synthase YP_001675447.1 3946805 D 458817 CDS YP_001675448.1 167625154 5906312 complement(3947870..3948307) 1 NC_010334.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: shn:Shewana3_0987 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 3948307 5906312 Shal_3242 Shewanella halifaxensis HAW-EB4 ribosomal-protein-alanine acetyltransferase YP_001675448.1 3947870 R 458817 CDS YP_001675449.1 167625155 5906166 complement(3948307..3948654) 1 NC_010334.1 KEGG: sfr:Sfri_0690 hypothetical protein; hypothetical protein 3948654 5906166 Shal_3243 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675449.1 3948307 R 458817 CDS YP_001675450.1 167625156 5905284 3956620..3957132 1 NC_010334.1 KEGG: shm:Shewmr7_3071 hypothetical protein; hypothetical protein 3957132 5905284 Shal_3244 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675450.1 3956620 D 458817 CDS YP_001675451.1 167625157 5905232 complement(3957211..3957555) 1 NC_010334.1 KEGG: slo:Shew_2947 hypothetical protein; hypothetical protein 3957555 5905232 Shal_3245 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675451.1 3957211 R 458817 CDS YP_001675452.1 167625158 5905233 complement(3957850..3960423) 1 NC_010334.1 PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: shw:Sputw3181_3141 ATPase AAA-2 domain protein; ATPase 3960423 5905233 Shal_3246 Shewanella halifaxensis HAW-EB4 ATPase YP_001675452.1 3957850 R 458817 CDS YP_001675453.1 167625159 5904929 complement(3960639..3961385) 1 NC_010334.1 PFAM: protein of unknown function DUF152; KEGG: slo:Shew_2949 protein of unknown function DUF152; hypothetical protein 3961385 5904929 Shal_3247 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675453.1 3960639 R 458817 CDS YP_001675454.1 167625160 5904930 complement(3961382..3962356) 1 NC_010334.1 KEGG: slo:Shew_2950 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 3962356 5904930 Shal_3248 Shewanella halifaxensis HAW-EB4 RluA family pseudouridine synthase YP_001675454.1 3961382 R 458817 CDS YP_001675455.1 167625161 5904865 3962434..3963240 1 NC_010334.1 KEGG: shm:Shewmr7_3075 putative lipoprotein; putative lipoprotein 3963240 5904865 Shal_3249 Shewanella halifaxensis HAW-EB4 putative lipoprotein YP_001675455.1 3962434 D 458817 CDS YP_001675456.1 167625162 5904866 complement(3963365..3965494) 1 NC_010334.1 KEGG: vvu:VV1_2366 predicted exporter of the RND superfamily; exporter of the RND superfamily protein-like protein 3965494 5904866 Shal_3250 Shewanella halifaxensis HAW-EB4 exporter of the RND superfamily protein-like protein YP_001675456.1 3963365 R 458817 CDS YP_001675457.1 167625163 5904750 complement(3966080..3967942) 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: spc:Sputcn32_0796 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3967942 5904750 Shal_3251 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis sensory transducer YP_001675457.1 3966080 R 458817 CDS YP_001675458.1 167625164 5904703 3968183..3969130 1 NC_010334.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 3969130 5904703 Shal_3252 Shewanella halifaxensis HAW-EB4 ornithine cyclodeaminase YP_001675458.1 3968183 D 458817 CDS YP_001675459.1 167625165 5904580 3969353..3969907 1 NC_010334.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: slo:Shew_2956 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3969907 5904580 Shal_3253 Shewanella halifaxensis HAW-EB4 ECF subfamily RNA polymerase sigma-24 factor YP_001675459.1 3969353 D 458817 CDS YP_001675460.1 167625166 5904581 3969900..3970430 1 NC_010334.1 KEGG: slo:Shew_2957 hypothetical protein; hypothetical protein 3970430 5904581 Shal_3254 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675460.1 3969900 D 458817 CDS YP_001675461.1 167625167 5904505 3970433..3971374 1 NC_010334.1 KEGG: sfr:Sfri_0844 hypothetical protein; hypothetical protein 3971374 5904505 Shal_3255 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675461.1 3970433 D 458817 CDS YP_001675462.1 167625168 5904506 complement(3971649..3972341) 1 NC_010334.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shw:Sputw3181_3383 pseudouridine synthase; pseudouridine synthase 3972341 5904506 Shal_3256 Shewanella halifaxensis HAW-EB4 pseudouridine synthase YP_001675462.1 3971649 R 458817 CDS YP_001675463.1 167625169 5904406 3972472..3973092 1 NC_010334.1 KEGG: slo:Shew_2974 transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase 3973092 5904406 Shal_3257 Shewanella halifaxensis HAW-EB4 hexapaptide repeat-containing transferase YP_001675463.1 3972472 D 458817 CDS YP_001675464.1 167625170 5904407 3973326..3975410 1 NC_010334.1 PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: shw:Sputw3181_3384 endothelin-converting enzyme 1; endothelin-converting protein 1 3975410 5904407 Shal_3258 Shewanella halifaxensis HAW-EB4 endothelin-converting protein 1 YP_001675464.1 3973326 D 458817 CDS YP_001675465.1 167625171 5905415 3975616..3976401 1 NC_010334.1 KEGG: she:Shewmr4_3180 hypothetical protein; hypothetical protein 3976401 5905415 Shal_3259 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675465.1 3975616 D 458817 CDS YP_001675466.1 167625172 5905416 3976753..3977157 1 NC_010334.1 KEGG: slo:Shew_2971 hypothetical protein; hypothetical protein 3977157 5905416 Shal_3260 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675466.1 3976753 D 458817 CDS YP_001675467.1 167625173 5905646 3977211..3977711 1 NC_010334.1 KEGG: slo:Shew_2970 hypothetical protein; hypothetical protein 3977711 5905646 Shal_3261 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675467.1 3977211 D 458817 CDS YP_001675468.1 167625174 5905647 complement(3977993..3978616) 1 NC_010334.1 PFAM: Glutathione S-transferase domain; KEGG: slo:Shew_2968 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 3978616 5905647 Shal_3262 Shewanella halifaxensis HAW-EB4 glutathione S-transferase domain-containing protein YP_001675468.1 3977993 R 458817 CDS YP_001675469.1 167625175 5905103 3978830..3979369 1 NC_010334.1 PFAM: membrane-flanked domain; KEGG: sfr:Sfri_0836 membrane-flanked domain; membrane-flanked domain-containing protein 3979369 5905103 Shal_3263 Shewanella halifaxensis HAW-EB4 membrane-flanked domain-containing protein YP_001675469.1 3978830 D 458817 CDS YP_001675470.1 167625176 5905104 3979472..3980737 1 NC_010334.1 KEGG: she:Shewmr4_3186 putative manganese transporter; putative manganese transporter 3980737 5905104 Shal_3264 Shewanella halifaxensis HAW-EB4 putative manganese transporter YP_001675470.1 3979472 D 458817 CDS YP_001675471.1 167625177 5905333 3980761..3981960 1 NC_010334.1 PFAM: beta-lactamase; KEGG: son:SO_0914 hypothetical protein; beta-lactamase 3981960 5905333 Shal_3265 Shewanella halifaxensis HAW-EB4 beta-lactamase YP_001675471.1 3980761 D 458817 CDS YP_001675472.1 167625178 5905334 3982046..3982519 1 NC_010334.1 PFAM: protein of unknown function DUF1456; KEGG: slo:Shew_2963 protein of unknown function DUF1456; hypothetical protein 3982519 5905334 Shal_3266 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675472.1 3982046 D 458817 CDS YP_001675473.1 167625179 5903878 3983240..3984928 1 NC_010334.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 3984928 5903878 Shal_3267 Shewanella halifaxensis HAW-EB4 malate dehydrogenase YP_001675473.1 3983240 D 458817 CDS YP_001675474.1 167625180 5903879 complement(3985317..3985937) 1 NC_010334.1 hypothetical protein 3985937 5903879 Shal_3268 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675474.1 3985317 R 458817 CDS YP_001675475.1 167625181 5905964 complement(3985945..3987003) 1 NC_010334.1 PFAM: protein of unknown function DUF262; KEGG: pen:PSEEN5223 hypothetical protein; hypothetical protein 3987003 5905964 Shal_3269 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675475.1 3985945 R 458817 CDS YP_001675476.1 167625182 5905965 complement(3988181..3988759) 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3558 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3988759 5905965 Shal_3270 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001675476.1 3988181 R 458817 CDS YP_001675477.1 167625183 5906811 complement(3988843..3991113) 1 NC_010334.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0608 molybdopterin oxidoreductase; nitrate reductase 3991113 5906811 Shal_3271 Shewanella halifaxensis HAW-EB4 nitrate reductase YP_001675477.1 3988843 R 458817 CDS YP_001675478.1 167625184 5906812 complement(3991804..3992241) 1 NC_010334.1 KEGG: slo:Shew_2976 hypothetical protein; hypothetical protein 3992241 5906812 Shal_3272 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675478.1 3991804 R 458817 CDS YP_001675479.1 167625185 5906849 complement(3992373..3992897) 1 NC_010334.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: sbm:Shew185_3636 phosphoesterase PA-phosphatase related; PA-phosphatase-like phosphoesterase 3992897 5906849 Shal_3273 Shewanella halifaxensis HAW-EB4 PA-phosphatase-like phosphoesterase YP_001675479.1 3992373 R 458817 CDS YP_001675480.1 167625186 5906850 3993085..3994968 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_2977 diguanylate cyclase; diguanylate cyclase 3994968 5906850 Shal_3274 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001675480.1 3993085 D 458817 CDS YP_001675481.1 167625187 5906855 3995079..3996323 1 NC_010334.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; KEGG: slo:Shew_2979 putative iron-sulfur cluster binding protein; putative iron-sulfur cluster-binding protein 3996323 5906855 Shal_3275 Shewanella halifaxensis HAW-EB4 putative iron-sulfur cluster-binding protein YP_001675481.1 3995079 D 458817 CDS YP_001675482.1 167625188 5906856 complement(3996365..3996577) 1 NC_010334.1 PFAM: protein of unknown function DUF1458; KEGG: sfr:Sfri_0829 protein of unknown function DUF1458; hypothetical protein 3996577 5906856 Shal_3276 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675482.1 3996365 R 458817 CDS YP_001675483.1 167625189 5905551 complement(3996712..3997221) 1 NC_010334.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: mxa:MXAN_5223 4-carboxymuconolactone decarboxylase domain protein; alkylhydroperoxidase 3997221 5905551 Shal_3277 Shewanella halifaxensis HAW-EB4 alkylhydroperoxidase YP_001675483.1 3996712 R 458817 CDS YP_001675484.1 167625190 5905552 3997363..3998256 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppr:PBPRB1577 hypothetical transcriptional regulator; LysR family transcriptional regulator 3998256 5905552 Shal_3278 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001675484.1 3997363 D 458817 CDS YP_001675485.1 167625191 5903997 complement(3998367..3998960) 1 NC_010334.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sbm:Shew185_4223 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 3998960 5903997 Shal_3279 Shewanella halifaxensis HAW-EB4 alkyl hydroperoxide reductase YP_001675485.1 3998367 R 458817 CDS YP_001675486.1 167625192 5903998 complement(3998947..3999681) 1 NC_010334.1 PFAM: DSBA oxidoreductase; KEGG: shw:Sputw3181_3957 DsbA oxidoreductase; DSBA oxidoreductase 3999681 5903998 Shal_3280 Shewanella halifaxensis HAW-EB4 DSBA oxidoreductase YP_001675486.1 3998947 R 458817 CDS YP_001675487.1 167625193 5903868 complement(3999804..4001861) 1 NC_010334.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: sbm:Shew185_4225 cytochrome c biogenesis protein transmembrane region; cytochrome c biogenesis protein transmembrane region 4001861 5903868 Shal_3281 Shewanella halifaxensis HAW-EB4 cytochrome c biogenesis protein transmembrane region YP_001675487.1 3999804 R 458817 CDS YP_001675488.1 167625194 5903869 complement(4002041..4002391) 1 NC_010334.1 KEGG: shw:Sputw3181_3959 hypothetical protein; hypothetical protein 4002391 5903869 Shal_3282 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675488.1 4002041 R 458817 CDS YP_001675489.1 167625195 5903946 4002900..4003802 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbm:Shew185_3641 transcriptional regulator, LysR family; LysR family transcriptional regulator 4003802 5903946 Shal_3283 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001675489.1 4002900 D 458817 CDS YP_001675490.1 167625196 5903947 complement(4003876..4004604) 1 NC_010334.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: slo:Shew_2988 putative signal transduction protein; putative signal transduction protein 4004604 5903947 Shal_3284 Shewanella halifaxensis HAW-EB4 putative signal transduction protein YP_001675490.1 4003876 R 458817 CDS YP_001675491.1 167625197 5904071 complement(4004853..4005464) 1 NC_010334.1 PFAM: lipolytic protein G-D-S-L family; KEGG: saz:Sama_2630 lipolytic enzyme, G-D-S-L; GDSL family lipase 4005464 5904071 Shal_3285 Shewanella halifaxensis HAW-EB4 GDSL family lipase YP_001675491.1 4004853 R 458817 CDS YP_001675492.1 167625198 5904072 complement(4005552..4007405) 1 NC_010334.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_1162 TonB-dependent vitamin B12 receptor; TonB-dependent receptor plug 4007405 5904072 Shal_3286 Shewanella halifaxensis HAW-EB4 TonB-dependent receptor plug YP_001675492.1 4005552 R 458817 CDS YP_001675493.1 167625199 5903553 complement(4008084..4008605) 1 NC_010334.1 PFAM: NADPH-dependent FMN reductase; KEGG: cps:CPS_1243 FMN reductase, NADPH-dependent; NADPH-dependent FMN reductase 4008605 5903553 Shal_3287 Shewanella halifaxensis HAW-EB4 NADPH-dependent FMN reductase YP_001675493.1 4008084 R 458817 CDS YP_001675494.1 167625200 5904067 4008833..4009744 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_1244 transcriptional regulator, LysR family; LysR family transcriptional regulator 4009744 5904067 Shal_3288 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001675494.1 4008833 D 458817 CDS YP_001675495.1 167625201 5904068 4009910..4012078 1 NC_010334.1 SMART: extracellular solute-binding protein family 3; KEGG: slo:Shew_3001 extracellular solute-binding protein, family 3; extracellular solute-binding protein 4012078 5904068 Shal_3289 Shewanella halifaxensis HAW-EB4 extracellular solute-binding protein YP_001675495.1 4009910 D 458817 CDS YP_001675496.1 167625202 5904063 complement(4012152..4012868) 1 NC_010334.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ppr:PBPRB1023 hypothetical ribosomal small subunit pseudouridine synthase A; pseudouridine synthase 4012868 5904063 Shal_3290 Shewanella halifaxensis HAW-EB4 pseudouridine synthase YP_001675496.1 4012152 R 458817 CDS YP_001675497.1 167625203 5904064 4013080..4014117 1 NC_010334.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 4014117 5904064 Shal_3291 Shewanella halifaxensis HAW-EB4 dihydroorotase YP_001675497.1 4013080 D 458817 CDS YP_001675498.1 167625204 5903882 4014418..4014762 1 NC_010334.1 KEGG: slo:Shew_2639 hypothetical protein; hypothetical protein 4014762 5903882 Shal_3292 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675498.1 4014418 D 458817 CDS YP_001675499.1 167625205 5903883 complement(4014824..4015603) 1 NC_010334.1 KEGG: slo:Shew_3002 hypothetical protein; hypothetical protein 4015603 5903883 Shal_3293 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675499.1 4014824 R 458817 CDS YP_001675500.1 167625206 5903838 4015773..4016051 1 NC_010334.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: slo:Shew_3008 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 4016051 5903838 Shal_3294 Shewanella halifaxensis HAW-EB4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001675500.1 4015773 D 458817 CDS YP_001675501.1 167625207 5903839 complement(4016568..4017644) 1 NC_010334.1 PFAM: glucose sorbosone dehydrogenase; KEGG: ppr:PBPRB1412 hypothetical glucose dehydrogenase; glucose sorbosone dehydrogenase 4017644 5903839 Shal_3295 Shewanella halifaxensis HAW-EB4 glucose sorbosone dehydrogenase YP_001675501.1 4016568 R 458817 CDS YP_001675502.1 167625208 5903633 complement(4018011..4020005) 1 NC_010334.1 PFAM: protein of unknown function DUF1704; KEGG: slo:Shew_2900 protein of unknown function DUF1704; hypothetical protein 4020005 5903633 Shal_3296 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675502.1 4018011 R 458817 CDS YP_001675503.1 167625209 5903634 complement(4019989..4021008) 1 NC_010334.1 The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 4021008 5903634 Shal_3297 Shewanella halifaxensis HAW-EB4 glutathione synthetase YP_001675503.1 4019989 R 458817 CDS YP_001675504.1 167625210 5904200 complement(4021430..4022494) 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vvy:VV2684 GGDEF family protein; diguanylate cyclase 4022494 5904200 Shal_3298 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001675504.1 4021430 R 458817 CDS YP_001675505.1 167625211 5904201 4022835..4024382 1 NC_010334.1 PFAM: ferredoxin-dependent glutamate synthase; SMART: zinc finger CDGSH-type domain protein; KEGG: cps:CPS_1903 glutamate synthase domain protein; ferredoxin-dependent glutamate synthase 4024382 5904201 Shal_3299 Shewanella halifaxensis HAW-EB4 ferredoxin-dependent glutamate synthase YP_001675505.1 4022835 D 458817 CDS YP_001675506.1 167625212 5903944 complement(4024454..4025044) 1 NC_010334.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: sbl:Sbal_1573 HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD family hydrolase 4025044 5903944 Shal_3300 Shewanella halifaxensis HAW-EB4 HAD family hydrolase YP_001675506.1 4024454 R 458817 CDS YP_001675507.1 167625213 5903945 complement(4025093..4027666) 1 NC_010334.1 KEGG: sfr:Sfri_0910 UTP-GlnB uridylyltransferase, GlnD; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; GlnD PII-uridylyltransferase; protein-P-II uridylyltransferase 4027666 5903945 Shal_3301 Shewanella halifaxensis HAW-EB4 protein-P-II uridylyltransferase YP_001675507.1 4025093 R 458817 CDS YP_001675508.1 167625214 5903964 4028098..4028523 1 NC_010334.1 KEGG: sdn:Sden_2069 hypothetical protein; hypothetical protein 4028523 5903964 Shal_3302 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675508.1 4028098 D 458817 CDS YP_001675509.1 167625215 5903965 complement(4028551..4029504) 1 NC_010334.1 KEGG: pin:Ping_2245 hypothetical protein; hypothetical protein 4029504 5903965 Shal_3303 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675509.1 4028551 R 458817 CDS YP_001675510.1 167625216 5903938 complement(4029786..4031255) 1 NC_010334.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: slo:Shew_3327 RNA-metabolising metallo-beta-lactamase; RNA-metabolising metallo-beta-lactamase 4031255 5903938 Shal_3304 Shewanella halifaxensis HAW-EB4 RNA-metabolising metallo-beta-lactamase YP_001675510.1 4029786 R 458817 CDS YP_001675511.1 167625217 5903939 complement(4031520..4032710) 1 NC_010334.1 KEGG: slo:Shew_2655 hypothetical protein; hypothetical protein 4032710 5903939 Shal_3305 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675511.1 4031520 R 458817 CDS YP_001675512.1 167625218 5904128 4033385..4033627 1 NC_010334.1 KEGG: ppr:PBPRB0452 hypothetical protein; hypothetical protein 4033627 5904128 Shal_3306 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675512.1 4033385 D 458817 CDS YP_001675513.1 167625219 5904129 4034026..4034922 1 NC_010334.1 PFAM: band 7 protein; KEGG: slo:Shew_0978 band 7 protein; hypothetical protein 4034922 5904129 Shal_3307 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675513.1 4034026 D 458817 CDS YP_001675514.1 167625220 5903745 complement(4035002..4035571) 1 NC_010334.1 KEGG: slo:Shew_1730 hypothetical protein; hypothetical protein 4035571 5903745 Shal_3308 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675514.1 4035002 R 458817 CDS YP_001675515.1 167625221 5903746 4036002..4037744 1 NC_010334.1 KEGG: vha:VIBHAR_05537 hypothetical protein; hypothetical protein 4037744 5903746 Shal_3309 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675515.1 4036002 D 458817 CDS YP_001675516.1 167625222 5903887 4038007..4040085 1 NC_010334.1 PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: sfr:Sfri_1958 endothelin-converting enzyme 1; endothelin-converting protein 1 4040085 5903887 Shal_3310 Shewanella halifaxensis HAW-EB4 endothelin-converting protein 1 YP_001675516.1 4038007 D 458817 CDS YP_001675517.1 167625223 5903888 4040338..4041195 1 NC_010334.1 YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU 4041195 5903888 Shal_3311 Shewanella halifaxensis HAW-EB4 putative glutathione S-transferase YghU YP_001675517.1 4040338 D 458817 CDS YP_001675518.1 167625224 5905587 complement(4041282..4041767) 1 NC_010334.1 PFAM: protein of unknown function DUF985; KEGG: spc:Sputcn32_3190 protein of unknown function DUF985; hypothetical protein 4041767 5905587 Shal_3312 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675518.1 4041282 R 458817 CDS YP_001675519.1 167625225 5905588 complement(4042015..4042263) 1 NC_010334.1 KEGG: slo:Shew_3030 hypothetical protein; hypothetical protein 4042263 5905588 Shal_3313 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675519.1 4042015 R 458817 CDS YP_001675520.1 167625226 5905762 4042547..4043911 1 NC_010334.1 KEGG: vfi:VFA0969 guanine deaminase; TIGRFAM: Guanine deaminase; PFAM: amidohydrolase; guanine deaminase 4043911 5905762 Shal_3314 Shewanella halifaxensis HAW-EB4 guanine deaminase YP_001675520.1 4042547 D 458817 CDS YP_001675521.1 167625227 5905763 complement(4044020..4045405) 1 NC_010334.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: aha:AHA_0949 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 4045405 5905763 Shal_3315 Shewanella halifaxensis HAW-EB4 xanthine/uracil/vitamin C permease YP_001675521.1 4044020 R 458817 CDS YP_001675522.1 167625228 5906127 4045811..4046563 1 NC_010334.1 PFAM: SpoOM family protein; KEGG: pha:PSHAa0857 SpoOM-related protein; SpoOM family protein 4046563 5906127 Shal_3316 Shewanella halifaxensis HAW-EB4 SpoOM family protein YP_001675522.1 4045811 D 458817 CDS YP_001675523.1 167625229 5906128 complement(4046675..4047829) 1 NC_010334.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rca:Rcas_3855 mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein 4047829 5906128 Shal_3317 Shewanella halifaxensis HAW-EB4 mandelate racemase/muconate lactonizing protein YP_001675523.1 4046675 R 458817 CDS YP_001675524.1 167625230 5906061 complement(4047834..4049432) 1 NC_010334.1 PFAM: BCCT transporter; KEGG: vha:VIBHAR_03056 hypothetical protein; BCCT transporter 4049432 5906061 Shal_3318 Shewanella halifaxensis HAW-EB4 BCCT transporter YP_001675524.1 4047834 R 458817 CDS YP_001675525.1 167625231 5906062 complement(4049531..4050886) 1 NC_010334.1 PFAM: FAD dependent oxidoreductase; KEGG: msm:MSMEG_3987 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4050886 5906062 Shal_3319 Shewanella halifaxensis HAW-EB4 FAD dependent oxidoreductase YP_001675525.1 4049531 R 458817 CDS YP_001675526.1 167625232 5903842 4051065..4051712 1 NC_010334.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rru:Rru_A3003 transcriptional regulator, GntR family; GntR family transcriptional regulator 4051712 5903842 Shal_3320 Shewanella halifaxensis HAW-EB4 GntR family transcriptional regulator YP_001675526.1 4051065 D 458817 CDS YP_001675527.1 167625233 5903843 complement(4052347..4052886) 1 NC_010334.1 KEGG: tva:TVAG_168130 smooth muscle caldesmon, putative Pfam: MAP1B_neuraxin PROSITE: FUMARATE_LYASES ARG_RICH GLU_RICH LYS_RICH SER_RICH; hypothetical protein 4052886 5903843 Shal_3321 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675527.1 4052347 R 458817 CDS YP_001675528.1 167625234 5903791 4053246..4054469 1 NC_010334.1 PFAM: sodium/glutamate symporter; KEGG: slo:Shew_0103 sodium/glutamate symporter; sodium/glutamate symporter 4054469 5903791 Shal_3322 Shewanella halifaxensis HAW-EB4 sodium/glutamate symporter YP_001675528.1 4053246 D 458817 CDS YP_001675529.1 167625235 5903733 complement(4056376..4057305) 1 NC_010334.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: vfi:VFA0117 transporter, drug/metabolite exporter family; hypothetical protein 4057305 5903733 Shal_3324 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675529.1 4056376 R 458817 CDS YP_001675530.1 167625236 5903734 4057655..4060528 1 NC_010334.1 KEGG: son:SO_4025 OmpA-like transmembrane domain protein; hypothetical protein 4060528 5903734 Shal_3325 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675530.1 4057655 D 458817 CDS YP_001675531.1 167625237 5903692 complement(4060657..4062843) 1 NC_010334.1 PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: sbl:Sbal_0643 protein of unknown function DUF181; hypothetical protein 4062843 5903692 Shal_3326 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675531.1 4060657 R 458817 CDS YP_001675532.1 167625238 5903693 complement(4063106..4063336) 1 NC_010334.1 KEGG: sbl:Sbal_0642 hypothetical protein; hypothetical protein 4063336 5903693 Shal_3327 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675532.1 4063106 R 458817 CDS YP_001675533.1 167625239 5903650 complement(4063739..4065355) 1 NC_010334.1 PFAM: carbohydrate kinase FGGY; KEGG: maq:Maqu_1344 carbohydrate kinase, FGGY; carbohydrate kinase FGGY 4065355 5903650 Shal_3328 Shewanella halifaxensis HAW-EB4 carbohydrate kinase FGGY YP_001675533.1 4063739 R 458817 CDS YP_001675534.1 167625240 5903651 complement(4065352..4066989) 1 NC_010334.1 PFAM: FAD dependent oxidoreductase; KEGG: maq:Maqu_1345 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4066989 5903651 Shal_3329 Shewanella halifaxensis HAW-EB4 FAD dependent oxidoreductase YP_001675534.1 4065352 R 458817 CDS YP_001675535.1 167625241 5903648 complement(4066986..4068629) 1 NC_010334.1 PFAM: FAD linked oxidase domain protein; KEGG: pap:PSPA7_2132 hypothetical protein; alkylglycerone-phosphate synthase 4068629 5903648 Shal_3330 Shewanella halifaxensis HAW-EB4 alkylglycerone-phosphate synthase YP_001675535.1 4066986 R 458817 CDS YP_001675536.1 167625242 5903649 4068751..4069797 1 NC_010334.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pmy:Pmen_1557 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 4069797 5903649 Shal_3331 Shewanella halifaxensis HAW-EB4 AraC family transcriptional regulator YP_001675536.1 4068751 D 458817 CDS YP_001675537.1 167625243 5903528 complement(4069926..4071122) 1 NC_010334.1 PFAM: Ankyrin; KEGG: tva:TVAG_291510 ankyrin repeat protein, putative Pfam: Ank Clathrin PROSITE: ANK_REPEAT ANK_REP_REGION; ankyrin 4071122 5903528 Shal_3332 Shewanella halifaxensis HAW-EB4 ankyrin YP_001675537.1 4069926 R 458817 CDS YP_001675538.1 167625244 5903529 complement(4071329..4071730) 1 NC_010334.1 KEGG: sbm:Shew185_3668 hypothetical protein; hypothetical protein 4071730 5903529 Shal_3333 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675538.1 4071329 R 458817 CDS YP_001675539.1 167625245 5903889 complement(4071981..4073564) 1 NC_010334.1 PFAM: Na+/H+ antiporter NhaC; KEGG: vco:VC0395_1016 hypothetical protein; Na+/H+ antiporter NhaC 4073564 5903889 Shal_3334 Shewanella halifaxensis HAW-EB4 Na+/H+ antiporter NhaC YP_001675539.1 4071981 R 458817 CDS YP_001675540.1 167625246 5903890 complement(4074103..4076070) 1 NC_010334.1 KEGG: slo:Shew_2580 hypothetical protein; hypothetical protein 4076070 5903890 Shal_3335 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675540.1 4074103 R 458817 CDS YP_001675541.1 167625247 5903966 4076925..4077113 1 NC_010334.1 KEGG: slo:Shew_1222 hypothetical protein; hypothetical protein 4077113 5903966 Shal_3336 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675541.1 4076925 D 458817 CDS YP_001675542.1 167625248 5903967 4077635..4077844 1 NC_010334.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ppr:PBPRB1929 putative Cold shock-like protein; cold-shock DNA-binding domain-containing protein 4077844 5903967 Shal_3337 Shewanella halifaxensis HAW-EB4 cold-shock DNA-binding domain-containing protein YP_001675542.1 4077635 D 458817 CDS YP_001675543.1 167625249 5903970 4078208..4078417 1 NC_010334.1 KEGG: vfi:VFA1093 hypothetical protein; hypothetical protein 4078417 5903970 Shal_3338 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675543.1 4078208 D 458817 CDS YP_001675544.1 167625250 5903971 complement(4078719..4079804) 1 NC_010334.1 KEGG: son:SO_2929 hypothetical protein; hypothetical protein 4079804 5903971 Shal_3339 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675544.1 4078719 R 458817 CDS YP_001675545.1 167625251 5904009 complement(4080023..4080520) 1 NC_010334.1 PFAM: protein of unknown function UPF0066; KEGG: sfu:Sfum_0270 protein of unknown function UPF0066; hypothetical protein 4080520 5904009 Shal_3340 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675545.1 4080023 R 458817 CDS YP_001675546.1 167625252 5904010 complement(4080605..4081795) 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sdn:Sden_0245 GGDEF domain; diguanylate cyclase 4081795 5904010 Shal_3341 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001675546.1 4080605 R 458817 CDS YP_001675547.1 167625253 5904023 complement(4082172..4083116) 1 NC_010334.1 KEGG: vfi:VF1097 BAX protein; BAX protein 4083116 5904023 Shal_3342 Shewanella halifaxensis HAW-EB4 BAX protein YP_001675547.1 4082172 R 458817 CDS YP_001675548.1 167625254 5904024 complement(4083285..4084286) 1 NC_010334.1 KEGG: vvy:VVA0149 hypothetical protein; hypothetical protein 4084286 5904024 Shal_3343 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675548.1 4083285 R 458817 CDS YP_001675549.1 167625255 5904027 complement(4084276..4085394) 1 NC_010334.1 PFAM: secretion protein HlyD family protein; KEGG: vvu:VV2_1308 multidrug resistance efflux pump; secretion protein HlyD family protein 4085394 5904027 Shal_3344 Shewanella halifaxensis HAW-EB4 secretion protein HlyD family protein YP_001675549.1 4084276 R 458817 CDS YP_001675550.1 167625256 5904028 complement(4085855..4086103) 1 NC_010334.1 KEGG: sdn:Sden_0849 hypothetical protein; hypothetical protein 4086103 5904028 Shal_3345 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675550.1 4085855 R 458817 CDS YP_001675551.1 167625257 5904029 4086529..4086972 1 NC_010334.1 KEGG: cps:CPS_2621 cytochrome c family protein; cytochrome c family protein 4086972 5904029 Shal_3346 Shewanella halifaxensis HAW-EB4 cytochrome c family protein YP_001675551.1 4086529 D 458817 CDS YP_001675552.1 167625258 5904030 complement(4087628..4088734) 1 NC_010334.1 TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: vfi:VFA0004 tripeptidase T; peptidase T-like protein 4088734 5904030 Shal_3347 Shewanella halifaxensis HAW-EB4 peptidase T-like protein YP_001675552.1 4087628 R 458817 CDS YP_001675553.1 167625259 5904085 complement(4088948..4089610) 1 NC_010334.1 PFAM: protein of unknown function DUF330; KEGG: cps:CPS_3078 putative lipoprotein; hypothetical protein 4089610 5904085 Shal_3348 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675553.1 4088948 R 458817 CDS YP_001675554.1 167625260 5904086 complement(4089607..4091259) 1 NC_010334.1 PFAM: Mammalian cell entry related domain protein; KEGG: cps:CPS_3077 putative paraquat-inducible protein B; hypothetical protein 4091259 5904086 Shal_3349 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675554.1 4089607 R 458817 CDS YP_001675555.1 167625261 5904118 complement(4091265..4092470) 1 NC_010334.1 TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: cps:CPS_3076 integral membrane protein, PqiA family; PqiA family integral membrane protein 4092470 5904118 Shal_3350 Shewanella halifaxensis HAW-EB4 PqiA family integral membrane protein YP_001675555.1 4091265 R 458817 CDS YP_001675556.1 167625262 5904119 4092770..4093201 1 NC_010334.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: slo:Shew_3055 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 4093201 5904119 Shal_3351 Shewanella halifaxensis HAW-EB4 zinc-binding CMP/dCMP deaminase YP_001675556.1 4092770 D 458817 CDS YP_001675557.1 167625263 5904120 4093519..4093872 1 NC_010334.1 KEGG: sfr:Sfri_2517 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 4093872 5904120 Shal_3352 Shewanella halifaxensis HAW-EB4 cation diffusion facilitator family transporter YP_001675557.1 4093519 D 458817 CDS YP_001675558.1 167625264 5904121 complement(4094097..4094858) 1 NC_010334.1 PFAM: protein of unknown function DUF81; KEGG: cvi:CV_2551 probable transmembrane protein; hypothetical protein 4094858 5904121 Shal_3353 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675558.1 4094097 R 458817 CDS YP_001675559.1 167625265 5904158 4095066..4095542 1 NC_010334.1 PFAM: 17 kDa surface antigen; KEGG: vpa:VP1192 putative outer membrane lipoprotein Pcp; 17 kDa surface antigen 4095542 5904158 Shal_3354 Shewanella halifaxensis HAW-EB4 17 kDa surface antigen YP_001675559.1 4095066 D 458817 CDS YP_001675560.1 167625266 5904159 4096541..4096972 1 NC_010334.1 hypothetical protein 4096972 5904159 Shal_3355 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675560.1 4096541 D 458817 CDS YP_001675561.1 167625267 5904160 4097060..4097593 1 NC_010334.1 PFAM: cation antiporter; KEGG: sfr:Sfri_2281 cation antiporter; cation antiporter 4097593 5904160 Shal_3356 Shewanella halifaxensis HAW-EB4 cation antiporter YP_001675561.1 4097060 D 458817 CDS YP_001675562.1 167625268 5904161 4097593..4097889 1 NC_010334.1 PFAM: multiple resistance and pH regulation protein F; KEGG: rru:Rru_A1640 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 4097889 5904161 Shal_3357 Shewanella halifaxensis HAW-EB4 multiple resistance and pH regulation protein F YP_001675562.1 4097593 D 458817 CDS YP_001675563.1 167625269 5904184 4097886..4098227 1 NC_010334.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: rba:RB1436 Na+/H+ antiporter; monovalent cation/proton antiporter subunit MnhG/PhaG 4098227 5904184 Shal_3358 Shewanella halifaxensis HAW-EB4 monovalent cation/proton antiporter subunit MnhG/PhaG YP_001675563.1 4097886 D 458817 CDS YP_001675564.1 167625270 5904185 4098305..4099219 1 NC_010334.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit B 4099219 5904185 Shal_3359 Shewanella halifaxensis HAW-EB4 putative monovalent cation/H+ antiporter subunit B YP_001675564.1 4098305 D 458817 CDS YP_001675565.1 167625271 5903988 4099219..4099587 1 NC_010334.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: pla:Plav_2968 NADH-ubiquinone oxidoreductase chain 4L; NADH-ubiquinone oxidoreductase chain 4L 4099587 5903988 Shal_3360 Shewanella halifaxensis HAW-EB4 NADH-ubiquinone oxidoreductase chain 4L YP_001675565.1 4099219 D 458817 CDS YP_001675566.1 167625272 5903989 4099581..4101059 1 NC_010334.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 4101059 5903989 Shal_3361 Shewanella halifaxensis HAW-EB4 putative monovalent cation/H+ antiporter subunit D YP_001675566.1 4099581 D 458817 CDS YP_001675567.1 167625273 5903936 4101056..4102546 1 NC_010334.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: pla:Plav_2966 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 4102546 5903936 Shal_3362 Shewanella halifaxensis HAW-EB4 NADH dehydrogenase (quinone) YP_001675567.1 4101056 D 458817 CDS YP_001675568.1 167625274 5903937 4102536..4102970 1 NC_010334.1 KEGG: smd:Smed_3627 hypothetical protein; hypothetical protein 4102970 5903937 Shal_3363 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675568.1 4102536 D 458817 CDS YP_001675569.1 167625275 5903798 4102957..4104657 1 NC_010334.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit D 4104657 5903798 Shal_3364 Shewanella halifaxensis HAW-EB4 putative monovalent cation/H+ antiporter subunit D YP_001675569.1 4102957 D 458817 CDS YP_001675570.1 167625276 5903799 4105001..4105561 1 NC_010334.1 KEGG: vpa:VP1418 hypothetical protein; hypothetical protein 4105561 5903799 Shal_3365 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675570.1 4105001 D 458817 CDS YP_001675571.1 167625277 5903698 4105732..4106091 1 NC_010334.1 hypothetical protein 4106091 5903698 Shal_3366 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675571.1 4105732 D 458817 CDS YP_001675572.1 167625278 5903699 4106539..4107993 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: aha:AHA_2229 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4107993 5903699 Shal_3367 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis sensory transducer YP_001675572.1 4106539 D 458817 CDS YP_001675573.1 167625279 5903694 4108305..4110023 1 NC_010334.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 4110023 ushA 5903694 ushA Shewanella halifaxensis HAW-EB4 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic YP_001675573.1 4108305 D 458817 CDS YP_001675574.1 167625280 5903695 complement(4110175..4111017) 1 NC_010334.1 KEGG: dde:Dde_3309 ABC transporter, periplasmic substrate-binding protein, putative; ABC transporter periplasmic substrate-binding protein 4111017 5903695 Shal_3369 Shewanella halifaxensis HAW-EB4 ABC transporter periplasmic substrate-binding protein YP_001675574.1 4110175 R 458817 CDS YP_001675575.1 167625281 5903666 4112198..4112542 1 NC_010334.1 hypothetical protein 4112542 5903666 Shal_3370 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675575.1 4112198 D 458817 CDS YP_001675576.1 167625282 5903667 4112600..4113652 1 NC_010334.1 PFAM: protein of unknown function DUF1568; KEGG: shm:Shewmr7_1178 protein of unknown function DUF1568; hypothetical protein 4113652 5903667 Shal_3371 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675576.1 4112600 D 458817 CDS YP_001675577.1 167625283 5903476 complement(4113682..4114113) 1 NC_010334.1 KEGG: slo:Shew_3059 hypothetical protein; hypothetical protein 4114113 5903476 Shal_3372 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675577.1 4113682 R 458817 CDS YP_001675578.1 167625284 5903477 complement(4114377..4117277) 1 NC_010334.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 4117277 5903477 Shal_3373 Shewanella halifaxensis HAW-EB4 glycine dehydrogenase YP_001675578.1 4114377 R 458817 CDS YP_001675579.1 167625285 5903482 complement(4117455..4117844) 1 NC_010334.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 4117844 5903482 Shal_3374 Shewanella halifaxensis HAW-EB4 glycine cleavage system protein H YP_001675579.1 4117455 R 458817 CDS YP_001675580.1 167625286 5903483 complement(4118267..4119361) 1 NC_010334.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 4119361 gcvT 5903483 gcvT Shewanella halifaxensis HAW-EB4 glycine cleavage system aminomethyltransferase T YP_001675580.1 4118267 R 458817 CDS YP_001675581.1 167625287 5903484 complement(4119680..4120900) 1 NC_010334.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: slo:Shew_3065 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 4120900 5903484 Shal_3376 Shewanella halifaxensis HAW-EB4 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_001675581.1 4119680 R 458817 CDS YP_001675582.1 167625288 5903485 complement(4120997..4122349) 1 NC_010334.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase FAD-binding; KEGG: slo:Shew_3066 2-polyprenyl-6-methoxyphenol 4-hydroxylase; 2-polyprenyl-6-methoxyphenol 4-hydroxylase 4122349 5903485 Shal_3377 Shewanella halifaxensis HAW-EB4 2-polyprenyl-6-methoxyphenol 4-hydroxylase YP_001675582.1 4120997 R 458817 CDS YP_001675583.1 167625289 5903486 complement(4122445..4123020) 1 NC_010334.1 TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: shw:Sputw3181_0727 YecA family protein; yecA family protein 4123020 5903486 Shal_3378 Shewanella halifaxensis HAW-EB4 yecA family protein YP_001675583.1 4122445 R 458817 CDS YP_001675584.1 167625290 5903487 4123438..4123758 1 NC_010334.1 PFAM: protein of unknown function DUF710; KEGG: slo:Shew_3068 protein of unknown function DUF710; hypothetical protein 4123758 5903487 Shal_3379 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675584.1 4123438 D 458817 CDS YP_001675585.1 167625291 5903492 4124392..4125852 1 NC_010334.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sfr:Sfri_3156 glycerophosphoryl diester phosphodiesterase-like protein; glycerophosphoryl diester phosphodiesterase 4125852 5903492 Shal_3380 Shewanella halifaxensis HAW-EB4 glycerophosphoryl diester phosphodiesterase YP_001675585.1 4124392 D 458817 CDS YP_001675586.1 167625292 5903493 4125845..4128319 1 NC_010334.1 KEGG: sfr:Sfri_3157 hypothetical protein; hypothetical protein 4128319 5903493 Shal_3381 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675586.1 4125845 D 458817 CDS YP_001675587.1 167625293 5903488 4128345..4130237 1 NC_010334.1 KEGG: sfr:Sfri_3158 hypothetical protein; hypothetical protein 4130237 5903488 Shal_3382 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675587.1 4128345 D 458817 CDS YP_001675588.1 167625294 5903489 complement(4130744..4131073) 1 NC_010334.1 hypothetical protein 4131073 5903489 Shal_3383 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675588.1 4130744 R 458817 CDS YP_001675589.1 167625295 5903490 4131422..4131685 1 NC_010334.1 hypothetical protein 4131685 5903490 Shal_3384 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675589.1 4131422 D 458817 CDS YP_001675590.1 167625296 5903491 4131919..4132641 1 NC_010334.1 SMART: regulatory protein Crp; KEGG: rme:Rmet_0213 cyclic nucleotide-binding domain (cNMP-BD) protein; CRP/FNR family transcriptional regulator 4132641 5903491 Shal_3385 Shewanella halifaxensis HAW-EB4 CRP/FNR family transcriptional regulator YP_001675590.1 4131919 D 458817 CDS YP_001675591.1 167625297 5903498 4132831..4133460 1 NC_010334.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: slo:Shew_3069 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 4133460 5903498 Shal_3386 Shewanella halifaxensis HAW-EB4 5-formyltetrahydrofolate cyclo-ligase YP_001675591.1 4132831 D 458817 CDS YP_001675592.1 167625298 5903499 4133666..4134289 1 NC_010334.1 PFAM: protein of unknown function DUF1326; KEGG: cps:CPS_2422 hypothetical protein; hypothetical protein 4134289 5903499 Shal_3387 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675592.1 4133666 D 458817 CDS YP_001675593.1 167625299 5903494 4134337..4135074 1 NC_010334.1 KEGG: cps:CPS_2421 hypothetical protein; hypothetical protein 4135074 5903494 Shal_3388 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675593.1 4134337 D 458817 CDS YP_001675594.1 167625300 5903495 complement(4135274..4135942) 1 NC_010334.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 4135942 5903495 Shal_3389 Shewanella halifaxensis HAW-EB4 uracil-DNA glycosylase YP_001675594.1 4135274 R 458817 CDS YP_001675595.1 167625301 5903496 4136199..4136750 1 NC_010334.1 KEGG: slo:Shew_3074 pilin, putative; pilin 4136750 5903496 Shal_3390 Shewanella halifaxensis HAW-EB4 pilin YP_001675595.1 4136199 D 458817 CDS YP_001675596.1 167625302 5903497 4136809..4137342 1 NC_010334.1 KEGG: sfr:Sfri_3092 methylation site containing protein; methylation site containing protein 4137342 5903497 Shal_3391 Shewanella halifaxensis HAW-EB4 methylation site containing protein YP_001675596.1 4136809 D 458817 CDS YP_001675597.1 167625303 5903504 4137417..4137710 1 NC_010334.1 KEGG: slo:Shew_3075 hypothetical protein; hypothetical protein 4137710 5903504 Shal_3392 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675597.1 4137417 D 458817 CDS YP_001675598.1 167625304 5903505 complement(4137827..4138441) 1 NC_010334.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shn:Shewana3_3224 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 4138441 5903505 Shal_3393 Shewanella halifaxensis HAW-EB4 lysine exporter protein LysE/YggA YP_001675598.1 4137827 R 458817 CDS YP_001675599.1 167625305 5903510 4138696..4139238 1 NC_010334.1 KEGG: son:SO_3659 thiol:disulfide interchange protein, putative; thiol:disulfide interchange protein 4139238 5903510 Shal_3394 Shewanella halifaxensis HAW-EB4 thiol:disulfide interchange protein YP_001675599.1 4138696 D 458817 CDS YP_001675600.1 167625306 5903511 4139637..4141235 1 NC_010334.1 PFAM: AMP-dependent synthetase and ligase; KEGG: shw:Sputw3181_3197 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4141235 5903511 Shal_3395 Shewanella halifaxensis HAW-EB4 AMP-dependent synthetase and ligase YP_001675600.1 4139637 D 458817 CDS YP_001675601.1 167625307 5903512 complement(4141390..4143462) 1 NC_010334.1 KEGG: slo:Shew_3087 lipid A ABC exporter family, fused ATPase and inner membrane subunits; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein 4143462 5903512 Shal_3396 Shewanella halifaxensis HAW-EB4 lipid ABC transporter ATPase/inner membrane protein YP_001675601.1 4141390 R 458817 CDS YP_001675602.1 167625308 5903513 complement(4143516..4144064) 1 NC_010334.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: shn:Shewana3_3233 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 4144064 5903513 Shal_3397 Shewanella halifaxensis HAW-EB4 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001675602.1 4143516 R 458817 CDS YP_001675603.1 167625309 5903514 complement(4144211..4144735) 1 NC_010334.1 PFAM: protein of unknown function DUF1008; KEGG: son:SO_3668 hypothetical protein; hypothetical protein 4144735 5903514 Shal_3398 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675603.1 4144211 R 458817 CDS YP_001675604.1 167625310 5903515 complement(4144861..4146927) 1 NC_010334.1 TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shw:Sputw3181_3201 TonB-dependent heme/hemoglobin receptor family protein; TonB-dependent heme/hemoglobin receptor family protein 4146927 5903515 Shal_3399 Shewanella halifaxensis HAW-EB4 TonB-dependent heme/hemoglobin receptor family protein YP_001675604.1 4144861 R 458817 CDS YP_001675605.1 167625311 5903526 4147258..4147956 1 NC_010334.1 TIGRFAM: TonB family protein; KEGG: sbm:Shew185_1020 TonB family protein; TonB family protein 4147956 5903526 Shal_3400 Shewanella halifaxensis HAW-EB4 TonB family protein YP_001675605.1 4147258 D 458817 CDS YP_001675606.1 167625312 5903527 4148044..4148820 1 NC_010334.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: sbm:Shew185_1019 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 4148820 5903527 Shal_3401 Shewanella halifaxensis HAW-EB4 MotA/TolQ/ExbB proton channel YP_001675606.1 4148044 D 458817 CDS YP_001675607.1 167625313 5903538 4148817..4149230 1 NC_010334.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sdn:Sden_0787 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 4149230 5903538 Shal_3402 Shewanella halifaxensis HAW-EB4 biopolymer transport protein ExbD/TolR YP_001675607.1 4148817 D 458817 CDS YP_001675608.1 167625314 5903539 4149336..4150253 1 NC_010334.1 PFAM: periplasmic binding protein; KEGG: sbl:Sbal_0948 periplasmic binding protein; periplasmic-binding protein 4150253 5903539 Shal_3403 Shewanella halifaxensis HAW-EB4 periplasmic-binding protein YP_001675608.1 4149336 D 458817 CDS YP_001675609.1 167625315 5903520 4150312..4151328 1 NC_010334.1 PFAM: transport system permease protein; KEGG: shn:Shewana3_3240 transport system permease protein; transport system permease 4151328 5903520 Shal_3404 Shewanella halifaxensis HAW-EB4 transport system permease YP_001675609.1 4150312 D 458817 CDS YP_001675610.1 167625316 5903521 4151331..4152143 1 NC_010334.1 with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 4152143 hmuV 5903521 hmuV Shewanella halifaxensis HAW-EB4 hemin importer ATP-binding subunit YP_001675610.1 4151331 D 458817 CDS YP_001675611.1 167625317 5903524 complement(4152203..4152784) 1 NC_010334.1 PFAM: regulatory protein TetR; KEGG: vfi:VF1676 hypothetical protein; TetR family transcriptional regulator 4152784 5903524 Shal_3406 Shewanella halifaxensis HAW-EB4 TetR family transcriptional regulator YP_001675611.1 4152203 R 458817 CDS YP_001675612.1 167625318 5903525 4152900..4153454 1 NC_010334.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: vvu:VV2_1034 dihydrofolate reductase; deaminase-reductase domain-containing protein 4153454 5903525 Shal_3407 Shewanella halifaxensis HAW-EB4 deaminase-reductase domain-containing protein YP_001675612.1 4152900 D 458817 CDS YP_001675613.1 167625319 5903522 4153523..4154023 1 NC_010334.1 PFAM: protein of unknown function DUF218; KEGG: xac:XAC0380 hypothetical protein; hypothetical protein 4154023 5903522 Shal_3408 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675613.1 4153523 D 458817 CDS YP_001675614.1 167625320 5903523 complement(4154059..4154970) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pha:PSHAb0015 putative transcriptional regulatory protein (LysR family); LysR family transcriptional regulator 4154970 5903523 Shal_3409 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001675614.1 4154059 R 458817 CDS YP_001675615.1 167625321 5903536 4155116..4155541 1 NC_010334.1 PFAM: transmembrane pair domain protein; KEGG: vfi:VFA1143 hypothetical membrane spanning protein; transmembrane pair domain-containing protein 4155541 5903536 Shal_3410 Shewanella halifaxensis HAW-EB4 transmembrane pair domain-containing protein YP_001675615.1 4155116 D 458817 CDS YP_001675616.1 167625322 5903537 4155785..4157197 1 NC_010334.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4157197 5903537 Shal_3411 Shewanella halifaxensis HAW-EB4 coproporphyrinogen III oxidase YP_001675616.1 4155785 D 458817 CDS YP_001675617.1 167625323 5903540 4157278..4157652 1 NC_010334.1 KEGG: slo:Shew_3089 hypothetical protein; hypothetical protein 4157652 5903540 Shal_3412 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675617.1 4157278 D 458817 CDS YP_001675618.1 167625324 5903541 4157926..4158096 1 NC_010334.1 PFAM: periplasmic nitrate reductase NapE; KEGG: psa:PST_1270 periplasmic nitrate reductase NapE subunit; periplasmic nitrate reductase NapE 4158096 5903541 Shal_3413 Shewanella halifaxensis HAW-EB4 periplasmic nitrate reductase NapE YP_001675618.1 4157926 D 458817 CDS YP_001675619.1 167625325 5903542 4158137..4159315 1 NC_010334.1 TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: slo:Shew_2797 trimethylamine-N-oxide reductase C-type cytochrome TorC; trimethylamine-N-oxide reductase c-type cytochrome TorC 4159315 5903542 Shal_3414 Shewanella halifaxensis HAW-EB4 trimethylamine-N-oxide reductase c-type cytochrome TorC YP_001675619.1 4158137 D 458817 CDS YP_001675620.1 167625326 5903543 4159330..4161828 1 NC_010334.1 TIGRFAM: trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sfr:Sfri_1994 trimethylamine-N-oxide reductase TorA; trimethylamine-N-oxide reductase TorA 4161828 5903543 Shal_3415 Shewanella halifaxensis HAW-EB4 trimethylamine-N-oxide reductase TorA YP_001675620.1 4159330 D 458817 CDS YP_001675621.1 167625327 5903551 4161825..4162490 1 NC_010334.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 4162490 torD 5903551 torD Shewanella halifaxensis HAW-EB4 chaperone protein TorD YP_001675621.1 4161825 D 458817 CDS YP_001675622.1 167625328 5903552 complement(4162586..4165750) 1 NC_010334.1 TIGRFAM: TMAO reductase sytem sensor TorS; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: sfr:Sfri_1992 multi-sensor hybrid histidine kinase; Hpt sensor hybrid histidine kinase 4165750 5903552 Shal_3417 Shewanella halifaxensis HAW-EB4 Hpt sensor hybrid histidine kinase YP_001675622.1 4162586 R 458817 CDS YP_001675623.1 167625329 5903569 4165859..4166923 1 NC_010334.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 4166923 5903569 Shal_3418 Shewanella halifaxensis HAW-EB4 TMAO reductase system periplasmic protein TorT YP_001675623.1 4165859 D 458817 CDS YP_001675624.1 167625330 5903570 complement(4166996..4167706) 1 NC_010334.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 4167706 5903570 Shal_3419 Shewanella halifaxensis HAW-EB4 DNA-binding transcriptional regulator TorR YP_001675624.1 4166996 R 458817 CDS YP_001675625.1 167625331 5903556 complement(4167894..4168631) 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: slo:Shew_0030 hypothetical protein; hypothetical protein 4168631 5903556 Shal_3420 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675625.1 4167894 R 458817 CDS YP_001675626.1 167625332 5903557 complement(4168815..4169639) 1 NC_010334.1 PFAM: Ion transport protein; KEGG: pha:PSHAb0529 putative cation transporter component; Ion transport protein 4169639 5903557 Shal_3421 Shewanella halifaxensis HAW-EB4 Ion transport protein YP_001675626.1 4168815 R 458817 CDS YP_001675627.1 167625333 5903559 complement(4169809..4170105) 1 NC_010334.1 KEGG: slo:Shew_3090 hypothetical protein; hypothetical protein 4170105 5903559 Shal_3422 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675627.1 4169809 R 458817 CDS YP_001675628.1 167625334 5903560 4170335..4171120 1 NC_010334.1 PFAM: membrane-flanked domain; KEGG: slo:Shew_3091 membrane-flanked domain protein; membrane-flanked domain-containing protein 4171120 5903560 Shal_3423 Shewanella halifaxensis HAW-EB4 membrane-flanked domain-containing protein YP_001675628.1 4170335 D 458817 CDS YP_001675629.1 167625335 5903577 4171110..4172627 1 NC_010334.1 PFAM: membrane-flanked domain; KEGG: slo:Shew_3092 membrane-flanked domain protein; membrane-flanked domain-containing protein 4172627 5903577 Shal_3424 Shewanella halifaxensis HAW-EB4 membrane-flanked domain-containing protein YP_001675629.1 4171110 D 458817 CDS YP_001675630.1 167625336 5903578 4172630..4173208 1 NC_010334.1 PFAM: protein of unknown function DUF924; KEGG: shm:Shewmr7_3145 protein of unknown function DUF924; hypothetical protein 4173208 5903578 Shal_3425 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675630.1 4172630 D 458817 CDS YP_001675631.1 167625337 5903579 complement(4173635..4174078) 1 NC_010334.1 PFAM: UspA domain protein; KEGG: slo:Shew_3100 UspA domain protein; UspA domain-containing protein 4174078 5903579 Shal_3426 Shewanella halifaxensis HAW-EB4 UspA domain-containing protein YP_001675631.1 4173635 R 458817 CDS YP_001675632.1 167625338 5903580 complement(4174265..4174696) 1 NC_010334.1 PFAM: UspA domain protein; KEGG: slo:Shew_3101 UspA domain protein; UspA domain-containing protein 4174696 5903580 Shal_3427 Shewanella halifaxensis HAW-EB4 UspA domain-containing protein YP_001675632.1 4174265 R 458817 CDS YP_001675633.1 167625339 5903600 complement(4174837..4175217) 1 NC_010334.1 KEGG: slo:Shew_3102 hypothetical protein; hypothetical protein 4175217 5903600 Shal_3428 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675633.1 4174837 R 458817 CDS YP_001675634.1 167625340 5903601 4175399..4176826 1 NC_010334.1 PFAM: aldehyde dehydrogenase; KEGG: sbm:Shew185_1007 aldehyde dehydrogenase; aldehyde dehydrogenase 4176826 5903601 Shal_3429 Shewanella halifaxensis HAW-EB4 aldehyde dehydrogenase YP_001675634.1 4175399 D 458817 CDS YP_001675635.1 167625341 5903602 4176851..4177423 1 NC_010334.1 PFAM: regulatory protein TetR; KEGG: slo:Shew_3104 transcriptional regulator, TetR family; TetR family transcriptional regulator 4177423 5903602 Shal_3430 Shewanella halifaxensis HAW-EB4 TetR family transcriptional regulator YP_001675635.1 4176851 D 458817 CDS YP_001675636.1 167625342 5903603 complement(4178193..4179563) 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: slo:Shew_0727 integral membrane sensor signal transduction histidine kinase; histidine kinase 4179563 5903603 Shal_3431 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001675636.1 4178193 R 458817 CDS YP_001675637.1 167625343 5903640 complement(4179608..4181059) 1 NC_010334.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: slo:Shew_0726 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma54 specific transcriptional regulator 4181059 5903640 Shal_3432 Shewanella halifaxensis HAW-EB4 Fis family two component sigma54 specific transcriptional regulator YP_001675637.1 4179608 R 458817 CDS YP_001675638.1 167625344 5903641 complement(4181186..4182397) 1 NC_010334.1 PFAM: protein of unknown function DUF214; KEGG: shm:Shewmr7_3157 protein of unknown function DUF214; hypothetical protein 4182397 5903641 Shal_3433 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675638.1 4181186 R 458817 CDS YP_001675639.1 167625345 5903598 complement(4182424..4183725) 1 NC_010334.1 PFAM: protein of unknown function DUF214; KEGG: shm:Shewmr7_3158 protein of unknown function DUF214; hypothetical protein 4183725 5903598 Shal_3434 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675639.1 4182424 R 458817 CDS YP_001675640.1 167625346 5903599 complement(4183747..4184496) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO_3692 ABC transporter, ATP-binding protein; ABC transporter-like protein 4184496 5903599 Shal_3435 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001675640.1 4183747 R 458817 CDS YP_001675641.1 167625347 5903604 complement(4184569..4184847) 1 NC_010334.1 hypothetical protein 4184847 5903604 Shal_3436 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675641.1 4184569 R 458817 CDS YP_001675642.1 167625348 5903605 complement(4184867..4186129) 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: slo:Shew_0721 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 4186129 5903605 Shal_3437 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001675642.1 4184867 R 458817 CDS YP_001675643.1 167625349 5903606 4186841..4187998 1 NC_010334.1 PFAM: porin Gram-negative type; KEGG: slo:Shew_2283 porin, gram-negative type; porin 4187998 5903606 Shal_3438 Shewanella halifaxensis HAW-EB4 porin YP_001675643.1 4186841 D 458817 CDS YP_001675644.1 167625350 5903607 4188803..4190173 1 NC_010334.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: esa:ESA_01519 hypothetical protein; nitrite transporter 4190173 5903607 Shal_3439 Shewanella halifaxensis HAW-EB4 nitrite transporter YP_001675644.1 4188803 D 458817 CDS YP_001675645.1 167625351 5903608 4190237..4193986 1 NC_010334.1 KEGG: eca:ECA2031 respiratory nitrate reductase 1 alpha chain; TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; nitrate reductase subunit alpha 4193986 5903608 Shal_3440 Shewanella halifaxensis HAW-EB4 nitrate reductase subunit alpha YP_001675645.1 4190237 D 458817 CDS YP_001675646.1 167625352 5903609 4193983..4195542 1 NC_010334.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: kpn:KPN_02213 nitrate reductase 1, Fe-S (beta) subunit; nitrate reductase subunit beta 4195542 5903609 Shal_3441 Shewanella halifaxensis HAW-EB4 nitrate reductase subunit beta YP_001675646.1 4193983 D 458817 CDS YP_001675647.1 167625353 5903610 4195535..4196260 1 NC_010334.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: eca:ECA2033 respiratory nitrate reductase 1 delta chain; nitrate reductase molybdenum cofactor assembly chaperone 4196260 5903610 Shal_3442 Shewanella halifaxensis HAW-EB4 nitrate reductase molybdenum cofactor assembly chaperone YP_001675647.1 4195535 D 458817 CDS YP_001675648.1 167625354 5903611 4196266..4196934 1 NC_010334.1 KEGG: esa:ESA_01523 hypothetical protein; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 4196934 5903611 Shal_3443 Shewanella halifaxensis HAW-EB4 respiratory nitrate reductase subunit gamma YP_001675648.1 4196266 D 458817 CDS YP_001675649.1 167625355 5903612 4197039..4197209 1 NC_010334.1 KEGG: spc:Sputcn32_2918 transposase, IS4 family protein; hypothetical protein 4197209 5903612 Shal_3444 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675649.1 4197039 D 458817 CDS YP_001675650.1 167625356 5903613 4197290..4197418 1 NC_010334.1 KEGG: shn:Shewana3_1487 porin, gram-negative type; porin 4197418 5903613 Shal_3445 Shewanella halifaxensis HAW-EB4 porin YP_001675650.1 4197290 D 458817 CDS YP_001675651.1 167625357 5903614 complement(4197560..4199086) 1 NC_010334.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: slo:Shew_2282 transcriptional regulator, fis family; Fis family transcriptional regulator 4199086 5903614 Shal_3446 Shewanella halifaxensis HAW-EB4 Fis family transcriptional regulator YP_001675651.1 4197560 R 458817 CDS YP_001675652.1 167625358 5903615 4200099..4201658 1 NC_010334.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: slo:Shew_2281 flavocytochrome c; flavocytochrome c 4201658 5903615 Shal_3447 Shewanella halifaxensis HAW-EB4 flavocytochrome c YP_001675652.1 4200099 D 458817 CDS YP_001675653.1 167625359 5903616 4201725..4203374 1 NC_010334.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: slo:Shew_2280 phenylalanine/histidine ammonia-lyase; phenylalanine/histidine ammonia-lyase 4203374 5903616 Shal_3448 Shewanella halifaxensis HAW-EB4 phenylalanine/histidine ammonia-lyase YP_001675653.1 4201725 D 458817 CDS YP_001675654.1 167625360 5903617 4203570..4203950 1 NC_010334.1 KEGG: slo:Shew_2279 tetraheme cytochrome c; tetraheme cytochrome c 4203950 5903617 Shal_3449 Shewanella halifaxensis HAW-EB4 tetraheme cytochrome c YP_001675654.1 4203570 D 458817 CDS YP_001675655.1 167625361 5903618 complement(4204408..4204791) 1 NC_010334.1 KEGG: saz:Sama_2866 hypothetical protein; hypothetical protein 4204791 5903618 Shal_3450 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675655.1 4204408 R 458817 CDS YP_001675656.1 167625362 5903619 complement(4205134..4205691) 1 NC_010334.1 KEGG: ppr:PBPRB0735 hypothetical protein; hypothetical protein 4205691 5903619 Shal_3451 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675656.1 4205134 R 458817 CDS YP_001675657.1 167625363 5903620 complement(4206148..4206984) 1 NC_010334.1 PFAM: periplasmic binding protein; KEGG: shn:Shewana3_3272 periplasmic binding protein; periplasmic-binding protein 4206984 5903620 Shal_3452 Shewanella halifaxensis HAW-EB4 periplasmic-binding protein YP_001675657.1 4206148 R 458817 CDS YP_001675658.1 167625364 5903621 complement(4207401..4208018) 1 NC_010334.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 4208018 5903621 Shal_3453 Shewanella halifaxensis HAW-EB4 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_001675658.1 4207401 R 458817 CDS YP_001675659.1 167625365 5903622 complement(4208382..4209983) 1 NC_010334.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 4209983 5903622 Shal_3454 Shewanella halifaxensis HAW-EB4 cobyric acid synthase YP_001675659.1 4208382 R 458817 CDS YP_001675660.1 167625366 5903623 complement(4209996..4210526) 1 NC_010334.1 PFAM: cobalbumin biosynthesis protein; KEGG: slo:Shew_0716 cobalbumin biosynthesis enzyme; cobalbumin biosynthesis protein 4210526 5903623 Shal_3455 Shewanella halifaxensis HAW-EB4 cobalbumin biosynthesis protein YP_001675660.1 4209996 R 458817 CDS YP_001675661.1 167625367 5903624 complement(4210523..4211302) 1 NC_010334.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: sbm:Shew185_0978 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase 4211302 5903624 Shal_3456 Shewanella halifaxensis HAW-EB4 cobalamin 5'-phosphate synthase YP_001675661.1 4210523 R 458817 CDS YP_001675662.1 167625368 5903625 complement(4211519..4211659) 1 NC_010334.1 hypothetical protein 4211659 5903625 Shal_3457 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675662.1 4211519 R 458817 CDS YP_001675663.1 167625369 5903642 complement(4211783..4212811) 1 NC_010334.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 4212811 cobT 5903642 cobT Shewanella halifaxensis HAW-EB4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_001675663.1 4211783 R 458817 CDS YP_001675664.1 167625370 5903643 complement(4212879..4213934) 1 NC_010334.1 PFAM: transport system permease protein; KEGG: sbl:Sbal_3365 transport system permease protein; transport system permease 4213934 5903643 Shal_3459 Shewanella halifaxensis HAW-EB4 transport system permease YP_001675664.1 4212879 R 458817 CDS YP_001675665.1 167625371 5904590 complement(4213927..4214856) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0712 ABC transporter-related protein; ABC transporter-like protein 4214856 5904590 Shal_3460 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001675665.1 4213927 R 458817 CDS YP_001675666.1 167625372 5904591 complement(4215566..4216213) 1 NC_010334.1 PFAM: Phosphoglycerate mutase; KEGG: slo:Shew_0711 phosphoglycerate mutase; phosphoglycerate mutase 4216213 5904591 Shal_3461 Shewanella halifaxensis HAW-EB4 phosphoglycerate mutase YP_001675666.1 4215566 R 458817 CDS YP_001675667.1 167625373 5904445 4216454..4220236 1 NC_010334.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4220236 metH 5904445 metH Shewanella halifaxensis HAW-EB4 B12-dependent methionine synthase YP_001675667.1 4216454 D 458817 CDS YP_001675668.1 167625374 5903335 4220872..4221789 1 NC_010334.1 PFAM: Urease accessory protein UreD; KEGG: vfi:VF0676 urease accessory protein UreD; urease accessory protein UreD 4221789 5903335 Shal_3464 Shewanella halifaxensis HAW-EB4 urease accessory protein UreD YP_001675668.1 4220872 D 458817 CDS YP_001675669.1 167625375 5903336 4221885..4222187 1 NC_010334.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 4222187 ureA 5903336 ureA Shewanella halifaxensis HAW-EB4 urease subunit gamma YP_001675669.1 4221885 D 458817 CDS YP_001675670.1 167625376 5904741 4222214..4222531 1 NC_010334.1 KEGG: ppf:Pput_2845 urease, beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease beta subunit; urease subunit beta 4222531 5904741 Shal_3466 Shewanella halifaxensis HAW-EB4 urease subunit beta YP_001675670.1 4222214 D 458817 CDS YP_001675671.1 167625377 5904742 4222534..4224237 1 NC_010334.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 4224237 ureC 5904742 ureC Shewanella halifaxensis HAW-EB4 urease subunit alpha YP_001675671.1 4222534 D 458817 CDS YP_001675672.1 167625378 5904957 4224315..4224833 1 NC_010334.1 PFAM: UreE urease accessory domain protein; KEGG: vfi:VF0672 urease accessory protein UreE; UreE urease accessory domain-containing protein 4224833 5904957 Shal_3468 Shewanella halifaxensis HAW-EB4 UreE urease accessory domain-containing protein YP_001675672.1 4224315 D 458817 CDS YP_001675673.1 167625379 5904958 4224837..4225520 1 NC_010334.1 PFAM: Urease accessory protein UreF; KEGG: vfi:VF0671 urease accessory protein UreF; urease accessory protein UreF 4225520 5904958 Shal_3469 Shewanella halifaxensis HAW-EB4 urease accessory protein UreF YP_001675673.1 4224837 D 458817 CDS YP_001675674.1 167625380 5905083 4225636..4226259 1 NC_010334.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: vfi:VF0670 urease accessory protein UreG; urease accessory protein UreG 4226259 5905083 Shal_3470 Shewanella halifaxensis HAW-EB4 urease accessory protein UreG YP_001675674.1 4225636 D 458817 CDS YP_001675675.1 167625381 5905084 4226503..4227741 1 NC_010334.1 PFAM: Endoribonuclease L-PSP; KEGG: ppr:PBPRB1772 hypothetical endoribonuclease L-PSP; endoribonuclease L-PSP 4227741 5905084 Shal_3471 Shewanella halifaxensis HAW-EB4 endoribonuclease L-PSP YP_001675675.1 4226503 D 458817 CDS YP_001675676.1 167625382 5905153 4227978..4228124 1 NC_010334.1 hypothetical protein 4228124 5905153 Shal_3472 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675676.1 4227978 D 458817 CDS YP_001675677.1 167625383 5905154 complement(4228311..4229051) 1 NC_010334.1 hypothetical protein 4229051 5905154 Shal_3473 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675677.1 4228311 R 458817 CDS YP_001675678.1 167625384 5905494 complement(4229499..4230098) 1 NC_010334.1 catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein 4230098 5905494 Shal_3474 Shewanella halifaxensis HAW-EB4 glutathione-dependent formaldehyde-activating protein YP_001675678.1 4229499 R 458817 CDS YP_001675679.1 167625385 5905495 4230644..4233925 1 NC_010334.1 PFAM: MscS Mechanosensitive ion channel; KEGG: vvu:VV1_0007 small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 4233925 5905495 Shal_3475 Shewanella halifaxensis HAW-EB4 mechanosensitive ion channel protein MscS YP_001675679.1 4230644 D 458817 CDS YP_001675680.1 167625386 5906487 4234227..4234475 1 NC_010334.1 KEGG: sdn:Sden_0577 hypothetical protein; hypothetical protein 4234475 5906487 Shal_3476 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675680.1 4234227 D 458817 CDS YP_001675681.1 167625387 5906488 4234832..4235827 1 NC_010334.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 4235827 5906488 Shal_3477 Shewanella halifaxensis HAW-EB4 adenosine deaminase YP_001675681.1 4234832 D 458817 CDS YP_001675682.1 167625388 5906089 4236396..4236737 1 NC_010334.1 PFAM: TM2 domain containing protein?; KEGG: ppd:Ppro_2995 TM2 domain containing protein+B7201; TM2 domain-containing protein 4236737 5906089 Shal_3478 Shewanella halifaxensis HAW-EB4 TM2 domain-containing protein YP_001675682.1 4236396 D 458817 CDS YP_001675683.1 167625389 5906090 4237644..4241054 1 NC_010334.1 KEGG: vvy:VVA1337 TagA-related protein; TagA-like protein 4241054 5906090 Shal_3479 Shewanella halifaxensis HAW-EB4 TagA-like protein YP_001675683.1 4237644 D 458817 CDS YP_001675684.1 167625390 5904621 complement(4241155..4241829) 1 NC_010334.1 PFAM: RDD domain containing protein; KEGG: shm:Shewmr7_2450 RDD domain containing protein; RDD domain-containing protein 4241829 5904621 Shal_3480 Shewanella halifaxensis HAW-EB4 RDD domain-containing protein YP_001675684.1 4241155 R 458817 CDS YP_001675685.1 167625391 5904622 4242326..4243159 1 NC_010334.1 KEGG: vha:VIBHAR_05537 hypothetical protein; hypothetical protein 4243159 5904622 Shal_3481 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675685.1 4242326 D 458817 CDS YP_001675686.1 167625392 5905864 complement(4243341..4244222) 1 NC_010334.1 hypothetical protein 4244222 5905864 Shal_3482 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675686.1 4243341 R 458817 CDS YP_001675687.1 167625393 5905865 4244665..4246629 1 NC_010334.1 PFAM: peptidase M4 thermolysin; Propeptide peptidase M4 and M36; Peptidase M4 thermolysin; KEGG: mxa:MXAN_5442 peptidase, M4 (thermolysin) family; peptidase M4 thermolysin 4246629 5905865 Shal_3483 Shewanella halifaxensis HAW-EB4 peptidase M4 thermolysin YP_001675687.1 4244665 D 458817 CDS YP_001675688.1 167625394 5904277 4247083..4247820 1 NC_010334.1 PFAM: extracellular solute-binding protein family 3; KEGG: son:SO_1044 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 4247820 5904277 Shal_3484 Shewanella halifaxensis HAW-EB4 extracellular solute-binding protein YP_001675688.1 4247083 D 458817 CDS YP_001675689.1 167625395 5904278 4247828..4248508 1 NC_010334.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_3165 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 4248508 5904278 Shal_3485 Shewanella halifaxensis HAW-EB4 polar amino acid ABC transporter inner membrane subunit YP_001675689.1 4247828 D 458817 CDS YP_001675690.1 167625396 5906076 4248501..4249226 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3164 ABC transporter-related protein; ABC transporter-like protein 4249226 5906076 Shal_3486 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001675690.1 4248501 D 458817 CDS YP_001675691.1 167625397 5906077 4249460..4249939 1 NC_010334.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: slo:Shew_0707 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 4249939 5906077 Shal_3487 Shewanella halifaxensis HAW-EB4 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_001675691.1 4249460 D 458817 CDS YP_001675692.1 167625398 5904309 4250167..4250658 1 NC_010334.1 KEGG: shw:Sputw3181_2912 hypothetical protein; hypothetical protein 4250658 5904309 Shal_3488 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675692.1 4250167 D 458817 CDS YP_001675693.1 167625399 5904310 4251093..4251668 1 NC_010334.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: son:SO_4295 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 4251668 5904310 Shal_3489 Shewanella halifaxensis HAW-EB4 NAD(P)H dehydrogenase (quinone) YP_001675693.1 4251093 D 458817 CDS YP_001675694.1 167625400 5906971 4251713..4252960 1 NC_010334.1 PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: shw:Sputw3181_0452 Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter 4252960 5906971 Shal_3490 Shewanella halifaxensis HAW-EB4 Na+ dependent nucleoside transporter YP_001675694.1 4251713 D 458817 CDS YP_001675695.1 167625401 5906972 4253287..4253946 1 NC_010334.1 KEGG: ppr:PBPRB0398 hypothetical protein; putative periplasmic ligand-binding sensor protein 4253946 5906972 Shal_3491 Shewanella halifaxensis HAW-EB4 putative periplasmic ligand-binding sensor protein YP_001675695.1 4253287 D 458817 CDS YP_001675696.1 167625402 5905786 4254236..4256278 1 NC_010334.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: slo:Shew_0490 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 4256278 5905786 Shal_3492 Shewanella halifaxensis HAW-EB4 peptidase S9 prolyl oligopeptidase YP_001675696.1 4254236 D 458817 CDS YP_001675697.1 167625403 5905787 complement(4256415..4256657) 1 NC_010334.1 hypothetical protein 4256657 5905787 Shal_3493 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675697.1 4256415 R 458817 CDS YP_001675698.1 167625404 5904419 complement(4256966..4261486) 1 NC_010334.1 KEGG: vvu:VV1_0767 hypothetical protein; hypothetical protein 4261486 5904419 Shal_3494 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675698.1 4256966 R 458817 CDS YP_001675699.1 167625405 5904420 complement(4261792..4263627) 1 NC_010334.1 KEGG: cdf:CD3145 putative serine-aspartate-rich surface anchored fibrinogen-binding protein; hypothetical protein 4263627 5904420 Shal_3495 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675699.1 4261792 R 458817 CDS YP_001675700.1 167625406 5904259 4264058..4267645 1 NC_010334.1 hypothetical protein 4267645 5904259 Shal_3496 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675700.1 4264058 D 458817 CDS YP_001675701.1 167625407 5903367 4269973..4270269 1 NC_010334.1 KEGG: sbm:Shew185_3407 hypothetical protein; hypothetical protein 4270269 5903367 Shal_3499 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675701.1 4269973 D 458817 CDS YP_001675702.1 167625408 5903368 complement(4270445..4271746) 1 NC_010334.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_2195 NADH dehydrogenase; NADH dehydrogenase 4271746 5903368 Shal_3500 Shewanella halifaxensis HAW-EB4 NADH dehydrogenase YP_001675702.1 4270445 R 458817 CDS YP_001675703.1 167625409 5904673 4272164..4272550 1 NC_010334.1 KEGG: vha:VIBHAR_04801 hypothetical protein; hypothetical protein 4272550 5904673 Shal_3501 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675703.1 4272164 D 458817 CDS YP_001675704.1 167625410 5904674 complement(4272623..4273150) 1 NC_010334.1 KEGG: sbm:Shew185_1422 lipoprotein, putative; putative lipoprotein 4273150 5904674 Shal_3502 Shewanella halifaxensis HAW-EB4 putative lipoprotein YP_001675704.1 4272623 R 458817 CDS YP_001675705.1 167625411 5904594 complement(4273293..4274024) 1 NC_010334.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mmw:Mmwyl1_4378 helix-turn-helix-domain containing protein AraC type; AraC family transcriptional regulator 4274024 5904594 Shal_3503 Shewanella halifaxensis HAW-EB4 AraC family transcriptional regulator YP_001675705.1 4273293 R 458817 CDS YP_001675706.1 167625412 5904595 4274182..4275432 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: pin:Ping_1574 transporter major facilitator superfamily MFS_1; major facilitator transporter 4275432 5904595 Shal_3504 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001675706.1 4274182 D 458817 CDS YP_001675707.1 167625413 5904528 complement(4275499..4276560) 1 NC_010334.1 KEGG: ppr:PBPRB1341 hypothetical protein; hypothetical protein 4276560 5904528 Shal_3505 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675707.1 4275499 R 458817 CDS YP_001675708.1 167625414 5904529 complement(4276606..4277673) 1 NC_010334.1 PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRB1340 putative secretion protein; secretion protein HlyD family protein 4277673 5904529 Shal_3506 Shewanella halifaxensis HAW-EB4 secretion protein HlyD family protein YP_001675708.1 4276606 R 458817 CDS YP_001675709.1 167625415 5904336 4277774..4278640 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppr:PBPRB1339 hypothetical transcriptional regulator; LysR family transcriptional regulator 4278640 5904336 Shal_3507 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001675709.1 4277774 D 458817 CDS YP_001675710.1 167625416 5904337 complement(4278831..4281665) 1 NC_010334.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shw:Sputw3181_2351 TonB-dependent receptor; TonB-dependent receptor 4281665 5904337 Shal_3508 Shewanella halifaxensis HAW-EB4 TonB-dependent receptor YP_001675710.1 4278831 R 458817 CDS YP_001675711.1 167625417 5904302 complement(4282043..4283425) 1 NC_010334.1 PFAM: Na+/H+ antiporter NhaC; KEGG: slo:Shew_0698 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 4283425 5904302 Shal_3509 Shewanella halifaxensis HAW-EB4 Na+/H+ antiporter NhaC YP_001675711.1 4282043 R 458817 CDS YP_001675712.1 167625418 5904303 complement(4283793..4284686) 1 NC_010334.1 KEGG: sbl:Sbal_3290 hypothetical protein; hypothetical protein 4284686 5904303 Shal_3510 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675712.1 4283793 R 458817 CDS YP_001675713.1 167625419 5903436 4284895..4285959 1 NC_010334.1 PFAM: permease; KEGG: vha:VIBHAR_05267 hypothetical protein; permease 4285959 5903436 Shal_3511 Shewanella halifaxensis HAW-EB4 permease YP_001675713.1 4284895 D 458817 CDS YP_001675714.1 167625420 5903437 4286143..4286358 1 NC_010334.1 PFAM: protein of unknown function DUF331; KEGG: slo:Shew_0695 protein of unknown function DUF331; hypothetical protein 4286358 5903437 Shal_3512 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675714.1 4286143 D 458817 CDS YP_001675715.1 167625421 5902604 complement(4286386..4287162) 1 NC_010334.1 KEGG: vco:VC0395_0913 putative lipoprotein; cold-shock DNA-binding domain-containing protein 4287162 5902604 Shal_3513 Shewanella halifaxensis HAW-EB4 cold-shock DNA-binding domain-containing protein YP_001675715.1 4286386 R 458817 CDS YP_001675716.1 167625422 5902605 complement(4287162..4288055) 1 NC_010334.1 PFAM: 3'-5' exonuclease; KEGG: shn:Shewana3_0980 3'-5' exonuclease; 3'-5' exonuclease 4288055 5902605 Shal_3514 Shewanella halifaxensis HAW-EB4 3'-5' exonuclease YP_001675716.1 4287162 R 458817 CDS YP_001675717.1 167625423 5903045 complement(4288097..4288696) 1 NC_010334.1 hypothetical protein 4288696 5903045 Shal_3515 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675717.1 4288097 R 458817 CDS YP_001675718.1 167625424 5903046 4288943..4290235 1 NC_010334.1 KEGG: shw:Sputw3181_2350 hypothetical protein; hypothetical protein 4290235 5903046 Shal_3516 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675718.1 4288943 D 458817 CDS YP_001675719.1 167625425 5902897 complement(4290393..4290929) 1 NC_010334.1 KEGG: sfr:Sfri_3634 hypothetical protein; hypothetical protein 4290929 5902897 Shal_3517 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675719.1 4290393 R 458817 CDS YP_001675720.1 167625426 5902898 complement(4290940..4291761) 1 NC_010334.1 KEGG: sfr:Sfri_3633 cytochrome c, putative; cytochrome c 4291761 5902898 Shal_3518 Shewanella halifaxensis HAW-EB4 cytochrome c YP_001675720.1 4290940 R 458817 CDS YP_001675721.1 167625427 5902657 4292217..4292969 1 NC_010334.1 PFAM: transcriptional regulator domain protein; KEGG: sfr:Sfri_3632 response regulator receiver protein; transcriptional regulator CadC 4292969 5902657 Shal_3519 Shewanella halifaxensis HAW-EB4 transcriptional regulator CadC YP_001675721.1 4292217 D 458817 CDS YP_001675722.1 167625428 5902658 4293030..4293548 1 NC_010334.1 KEGG: sfr:Sfri_3631 hypothetical protein; hypothetical protein 4293548 5902658 Shal_3520 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675722.1 4293030 D 458817 CDS YP_001675723.1 167625429 5904852 complement(4293600..4294430) 1 NC_010334.1 KEGG: slo:Shew_0689 hypothetical protein; hypothetical protein 4294430 5904852 Shal_3521 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675723.1 4293600 R 458817 CDS YP_001675724.1 167625430 5904853 4294915..4295574 1 NC_010334.1 PFAM: DSBA oxidoreductase; KEGG: sbm:Shew185_0941 DsbA oxidoreductase; DSBA oxidoreductase 4295574 5904853 Shal_3522 Shewanella halifaxensis HAW-EB4 DSBA oxidoreductase YP_001675724.1 4294915 D 458817 CDS YP_001675725.1 167625431 5904721 complement(4295656..4296669) 1 NC_010334.1 PFAM: glycosyl transferase group 1; KEGG: ana:all2291 glycosyltransferase; group 1 glycosyl transferase 4296669 5904721 Shal_3523 Shewanella halifaxensis HAW-EB4 group 1 glycosyl transferase YP_001675725.1 4295656 R 458817 CDS YP_001675726.1 167625432 5904722 complement(4297991..4298521) 1 NC_010334.1 KEGG: slo:Shew_0679 hypothetical protein; hypothetical protein 4298521 5904722 Shal_3524 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675726.1 4297991 R 458817 CDS YP_001675727.1 167625433 5904970 complement(4298539..4299072) 1 NC_010334.1 KEGG: shn:Shewana3_0871 protoporphyrinogen oxidase; protoporphyrinogen oxidase 4299072 5904970 Shal_3525 Shewanella halifaxensis HAW-EB4 protoporphyrinogen oxidase YP_001675727.1 4298539 R 458817 CDS YP_001675728.1 167625434 5904971 complement(4299291..4300955) 1 NC_010334.1 PFAM: protein of unknown function DUF1111; KEGG: sdn:Sden_0723 protein of unknown function DUF1111; hypothetical protein 4300955 5904971 Shal_3526 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675728.1 4299291 R 458817 CDS YP_001675729.1 167625435 5905142 complement(4301106..4302254) 1 NC_010334.1 KEGG: slo:Shew_0676 putative lipoprotein; putative lipoprotein 4302254 5905142 Shal_3527 Shewanella halifaxensis HAW-EB4 putative lipoprotein YP_001675729.1 4301106 R 458817 CDS YP_001675730.1 167625436 5905143 complement(4302288..4303712) 1 NC_010334.1 KEGG: sdn:Sden_0721 hypothetical protein; hypothetical protein 4303712 5905143 Shal_3528 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675730.1 4302288 R 458817 CDS YP_001675731.1 167625437 5905343 4304505..4305365 1 NC_010334.1 KEGG: slo:Shew_0673 hypothetical protein; hypothetical protein 4305365 5905343 Shal_3529 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675731.1 4304505 D 458817 CDS YP_001675732.1 167625438 5905344 complement(4305362..4305979) 1 NC_010334.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 4305979 5905344 Shal_3530 Shewanella halifaxensis HAW-EB4 adenylylsulfate kinase YP_001675732.1 4305362 R 458817 CDS YP_001675733.1 167625439 5905251 complement(4306085..4307809) 1 NC_010334.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: shn:Shewana3_0865 TrkA-C domain protein; TrkA domain-containing protein 4307809 5905251 Shal_3531 Shewanella halifaxensis HAW-EB4 TrkA domain-containing protein YP_001675733.1 4306085 R 458817 CDS YP_001675734.1 167625440 5905252 complement(4307812..4309251) 1 NC_010334.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 4309251 cysN 5905252 cysN Shewanella halifaxensis HAW-EB4 sulfate adenylyltransferase subunit 1 YP_001675734.1 4307812 R 458817 CDS YP_001675735.1 167625441 5905325 complement(4309300..4310208) 1 NC_010334.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 4310208 5905325 Shal_3533 Shewanella halifaxensis HAW-EB4 sulfate adenylyltransferase subunit 2 YP_001675735.1 4309300 R 458817 CDS YP_001675736.1 167625442 5905326 complement(4310235..4311056) 1 NC_010334.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO_3728 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 4311056 5905326 Shal_3534 Shewanella halifaxensis HAW-EB4 uroporphyrin-III C-methyltransferase YP_001675736.1 4310235 R 458817 CDS YP_001675737.1 167625443 5905459 4311470..4312435 1 NC_010334.1 PFAM: phospholipase A1; KEGG: saz:Sama_2893 phospholipase A(1); phospholipase A(1) 4312435 5905459 Shal_3535 Shewanella halifaxensis HAW-EB4 phospholipase A(1) YP_001675737.1 4311470 D 458817 CDS YP_001675738.1 167625444 5905460 4312517..4314034 1 NC_010334.1 KEGG: sbm:Shew185_0925 hypothetical protein; hypothetical protein 4314034 5905460 Shal_3536 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675738.1 4312517 D 458817 CDS YP_001675739.1 167625445 5905530 4314131..4314991 1 NC_010334.1 PFAM: protein of unknown function RIO1; KEGG: sbm:Shew185_0676 protein of unknown function RIO1; hypothetical protein 4314991 5905530 Shal_3537 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675739.1 4314131 D 458817 CDS YP_001675740.1 167625446 5905531 complement(4315117..4315665) 1 NC_010334.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: slo:Shew_0669 redoxin domain protein; alkyl hydroperoxide reductase 4315665 5905531 Shal_3538 Shewanella halifaxensis HAW-EB4 alkyl hydroperoxide reductase YP_001675740.1 4315117 R 458817 CDS YP_001675741.1 167625447 5905840 complement(4315787..4316209) 1 NC_010334.1 KEGG: pfl:PFL_5750 hypothetical protein; hypothetical protein 4316209 5905840 Shal_3539 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675741.1 4315787 R 458817 CDS YP_001675742.1 167625448 5905841 complement(4316314..4318038) 1 NC_010334.1 KEGG: sbl:Sbal_3412 hypothetical protein; hypothetical protein 4318038 5905841 Shal_3540 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675742.1 4316314 R 458817 CDS YP_001675743.1 167625449 5905740 complement(4318765..4319535) 1 NC_010334.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 4319535 5905740 Shal_3541 Shewanella halifaxensis HAW-EB4 phosphoadenosine phosphosulfate reductase YP_001675743.1 4318765 R 458817 CDS YP_001675744.1 167625450 5905741 complement(4319528..4321225) 1 NC_010334.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 4321225 5905741 Shal_3542 Shewanella halifaxensis HAW-EB4 sulfite reductase subunit beta YP_001675744.1 4319528 R 458817 CDS YP_001675745.1 167625451 5905770 complement(4321309..4323117) 1 NC_010334.1 TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: slo:Shew_0665 sulfite reductase (NADPH) flavoprotein, alpha chain; sulfite reductase (NADPH) flavoprotein subunit alpha 4323117 5905770 Shal_3543 Shewanella halifaxensis HAW-EB4 sulfite reductase (NADPH) flavoprotein subunit alpha YP_001675745.1 4321309 R 458817 CDS YP_001675746.1 167625452 5905771 4323436..4324650 1 NC_010334.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: slo:Shew_0664 alanine dehydrogenase/PNT domain protein; NAD(P)(+) transhydrogenase 4324650 5905771 Shal_3544 Shewanella halifaxensis HAW-EB4 NAD(P)(+) transhydrogenase YP_001675746.1 4323436 D 458817 CDS YP_001675747.1 167625453 5905827 4324650..4324925 1 NC_010334.1 KEGG: slo:Shew_0663 oxidoreductase; oxidoreductase 4324925 5905827 Shal_3545 Shewanella halifaxensis HAW-EB4 oxidoreductase YP_001675747.1 4324650 D 458817 CDS YP_001675748.1 167625454 5905828 4324932..4326314 1 NC_010334.1 PFAM: NAD(P) transhydrogenase beta subunit; KEGG: slo:Shew_0662 NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase 4326314 5905828 Shal_3546 Shewanella halifaxensis HAW-EB4 NAD(P)(+) transhydrogenase YP_001675748.1 4324932 D 458817 CDS YP_001675749.1 167625455 5905842 4326495..4327883 1 NC_010334.1 PFAM: MltA-interacting MipA family protein; KEGG: vfi:VF1562 hypothetical protein; MltA-interacting MipA family protein 4327883 5905842 Shal_3547 Shewanella halifaxensis HAW-EB4 MltA-interacting MipA family protein YP_001675749.1 4326495 D 458817 CDS YP_001675750.1 167625456 5905843 complement(4328206..4328682) 1 NC_010334.1 PFAM: regulatory protein TetR; KEGG: saz:Sama_0733 putative transcriptional regulator, TetR family; TetR family transcriptional regulator 4328682 5905843 Shal_3548 Shewanella halifaxensis HAW-EB4 TetR family transcriptional regulator YP_001675750.1 4328206 R 458817 CDS YP_001675751.1 167625457 5905941 complement(4328778..4329668) 1 NC_010334.1 KEGG: shn:Shewana3_0850 hypothetical protein; hypothetical protein 4329668 5905941 Shal_3549 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675751.1 4328778 R 458817 CDS YP_001675752.1 167625458 5905942 complement(4329709..4331139) 1 NC_010334.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 4331139 5905942 Shal_3550 Shewanella halifaxensis HAW-EB4 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_001675752.1 4329709 R 458817 CDS YP_001675753.1 167625459 5905858 4331240..4332166 1 NC_010334.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: slo:Shew_0658 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 4332166 5905858 Shal_3551 Shewanella halifaxensis HAW-EB4 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_001675753.1 4331240 D 458817 CDS YP_001675754.1 167625460 5905859 complement(4332565..4333092) 1 NC_010334.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: nar:Saro_3961 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 4333092 5905859 Shal_3552 Shewanella halifaxensis HAW-EB4 ECF subfamily RNA polymerase sigma-24 factor YP_001675754.1 4332565 R 458817 CDS YP_001675755.1 167625461 5906983 complement(4333215..4333694) 1 NC_010334.1 KEGG: pat:Patl_1751 hypothetical protein; hypothetical protein 4333694 5906983 Shal_3553 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675755.1 4333215 R 458817 CDS YP_001675756.1 167625462 5906984 4334414..4336708 1 NC_010334.1 KEGG: slo:Shew_0657 putative nitric oxide reductase (subunit B) transmembrane protein; nitric-oxide reductase 4336708 5906984 Shal_3554 Shewanella halifaxensis HAW-EB4 nitric-oxide reductase YP_001675756.1 4334414 D 458817 CDS YP_001675757.1 167625463 5906710 4337061..4338641 1 NC_010334.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 4338641 5906710 Shal_3555 Shewanella halifaxensis HAW-EB4 anaerobic nitric oxide reductase transcriptional regulator YP_001675757.1 4337061 D 458817 CDS YP_001675758.1 167625464 5906696 4340265..4341887 1 NC_010334.1 PFAM: peptidase M16 domain protein; KEGG: shn:Shewana3_0841 peptidase M16 domain protein; peptidase M16 domain-containing protein 4341887 5906696 Shal_3558 Shewanella halifaxensis HAW-EB4 peptidase M16 domain-containing protein YP_001675758.1 4340265 D 458817 CDS YP_001675759.1 167625465 5906697 4342043..4343056 1 NC_010334.1 PFAM: StbA family protein; KEGG: cko:CKO_02852 hypothetical protein; StbA family protein 4343056 5906697 Shal_3559 Shewanella halifaxensis HAW-EB4 StbA family protein YP_001675759.1 4342043 D 458817 CDS YP_001675760.1 167625466 5906664 4343067..4343783 1 NC_010334.1 KEGG: cko:CKO_02851 hypothetical protein; hypothetical protein 4343783 5906664 Shal_3560 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675760.1 4343067 D 458817 CDS YP_001675761.1 167625467 5906665 complement(4343979..4345301) 1 NC_010334.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 4345301 5906665 Shal_3561 Shewanella halifaxensis HAW-EB4 D-serine dehydratase YP_001675761.1 4343979 R 458817 CDS YP_001675762.1 167625468 5906424 complement(4345324..4346661) 1 NC_010334.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 4346661 5906424 Shal_3562 Shewanella halifaxensis HAW-EB4 permease DsdX YP_001675762.1 4345324 R 458817 CDS YP_001675763.1 167625469 5906425 4346916..4347860 1 NC_010334.1 regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 4347860 5906425 Shal_3563 Shewanella halifaxensis HAW-EB4 DNA-binding transcriptional regulator DsdC YP_001675763.1 4346916 D 458817 CDS YP_001675764.1 167625470 5906351 4347971..4348240 1 NC_010334.1 KEGG: sfr:Sfri_2004 hypothetical protein; hypothetical protein 4348240 5906351 Shal_3564 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675764.1 4347971 D 458817 CDS YP_001675765.1 167625471 5906352 4348323..4349183 1 NC_010334.1 KEGG: mmz:MmarC7_1679 tetratricopeptide TPR_2 repeat protein; hypothetical protein 4349183 5906352 Shal_3565 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675765.1 4348323 D 458817 CDS YP_001675766.1 167625472 5906327 complement(4349307..4350017) 1 NC_010334.1 hypothetical protein 4350017 5906327 Shal_3566 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675766.1 4349307 R 458817 CDS YP_001675767.1 167625473 5906328 complement(4350303..4350779) 1 NC_010334.1 KEGG: bbt:BBta_4307 putative membrane protein of unknown function; hypothetical protein 4350779 5906328 Shal_3567 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675767.1 4350303 R 458817 CDS YP_001675768.1 167625474 5906285 complement(4350802..4351308) 1 NC_010334.1 KEGG: vha:VIBHAR_01968 hypothetical protein; hypothetical protein 4351308 5906285 Shal_3568 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675768.1 4350802 R 458817 CDS YP_001675769.1 167625475 5906286 4352049..4354058 1 NC_010334.1 KEGG: eca:ECA0649 putative DNA mismatch repair protein; putative DNA mismatch repair protein 4354058 5906286 Shal_3569 Shewanella halifaxensis HAW-EB4 putative DNA mismatch repair protein YP_001675769.1 4352049 D 458817 CDS YP_001675770.1 167625476 5906191 complement(4354378..4354818) 1 NC_010334.1 KEGG: vvy:VV2395 hypothetical protein; hypothetical protein 4354818 5906191 Shal_3570 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675770.1 4354378 R 458817 CDS YP_001675771.1 167625477 5906192 complement(4354991..4355674) 1 NC_010334.1 hypothetical protein 4355674 5906192 Shal_3571 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675771.1 4354991 R 458817 CDS YP_001675772.1 167625478 5906059 complement(4355935..4358808) 1 NC_010334.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 4358808 5906059 Shal_3572 Shewanella halifaxensis HAW-EB4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_001675772.1 4355935 R 458817 CDS YP_001675773.1 167625479 5906060 4359160..4360119 1 NC_010334.1 KEGG: slo:Shew_0627 hypothetical protein; hypothetical protein 4360119 5906060 Shal_3573 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675773.1 4359160 D 458817 CDS YP_001675774.1 167625480 5905850 4360133..4361032 1 NC_010334.1 PFAM: protein of unknown function DUF350; KEGG: slo:Shew_0626 protein of unknown function DUF350; hypothetical protein 4361032 5905850 Shal_3574 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675774.1 4360133 D 458817 CDS YP_001675775.1 167625481 5905851 4361163..4362890 1 NC_010334.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 4362890 5905851 Shal_3575 Shewanella halifaxensis HAW-EB4 spermidine synthase YP_001675775.1 4361163 D 458817 CDS YP_001675776.1 167625482 5905997 4362982..4363395 1 NC_010334.1 KEGG: slo:Shew_0624 hypothetical protein; hypothetical protein 4363395 5905997 Shal_3576 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675776.1 4362982 D 458817 CDS YP_001675777.1 167625483 5905998 4363408..4364097 1 NC_010334.1 PFAM: PspA/IM30 family protein; KEGG: sfr:Sfri_3266 phage shock protein A, PspA; phage shock protein A 4364097 5905998 Shal_3577 Shewanella halifaxensis HAW-EB4 phage shock protein A YP_001675777.1 4363408 D 458817 CDS YP_001675778.1 167625484 5907020 4364109..4364759 1 NC_010334.1 KEGG: shw:Sputw3181_0852 hypothetical protein; hypothetical protein 4364759 5907020 Shal_3578 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675778.1 4364109 D 458817 CDS YP_001675779.1 167625485 5907021 4364878..4365207 1 NC_010334.1 KEGG: slo:Shew_0621 hypothetical protein; hypothetical protein 4365207 5907021 Shal_3579 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675779.1 4364878 D 458817 CDS YP_001675780.1 167625486 5906997 4365266..4366078 1 NC_010334.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: sbm:Shew185_0885 ion transport 2 domain protein; Ion transport 2 domain-containing protein 4366078 5906997 Shal_3580 Shewanella halifaxensis HAW-EB4 Ion transport 2 domain-containing protein YP_001675780.1 4365266 D 458817 CDS YP_001675781.1 167625487 5906998 complement(4366188..4367675) 1 NC_010334.1 PFAM: adenylate cyclase; KEGG: slo:Shew_0619 adenylate cyclase; adenylate cyclase 4367675 5906998 Shal_3581 Shewanella halifaxensis HAW-EB4 adenylate cyclase YP_001675781.1 4366188 R 458817 CDS YP_001675782.1 167625488 5906993 4367908..4368588 1 NC_010334.1 PFAM: protein of unknown function DUF47; KEGG: slo:Shew_0618 protein of unknown function DUF47; hypothetical protein 4368588 5906993 Shal_3582 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675782.1 4367908 D 458817 CDS YP_001675783.1 167625489 5906994 4368613..4369881 1 NC_010334.1 PFAM: phosphate transporter; KEGG: slo:Shew_0617 phosphate transporter; phosphate transporter 4369881 5906994 Shal_3583 Shewanella halifaxensis HAW-EB4 phosphate transporter YP_001675783.1 4368613 D 458817 CDS YP_001675784.1 167625490 5906881 4370044..4370619 1 NC_010334.1 KEGG: slo:Shew_0616 SH3 domain protein domain protein; SH3 domain-containing protein 4370619 5906881 Shal_3584 Shewanella halifaxensis HAW-EB4 SH3 domain-containing protein YP_001675784.1 4370044 D 458817 CDS YP_001675785.1 167625491 5906882 4371158..4374352 1 NC_010334.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 4374352 5906882 Shal_3585 Shewanella halifaxensis HAW-EB4 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_001675785.1 4371158 D 458817 CDS YP_001675786.1 167625492 5906875 4374706..4376586 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRA3375 putative methyl-accepting chemotaxis protein; Cache sensor containing methyl-accepting chemotaxis sensory transducer 4376586 5906875 Shal_3586 Shewanella halifaxensis HAW-EB4 Cache sensor containing methyl-accepting chemotaxis sensory transducer YP_001675786.1 4374706 D 458817 CDS YP_001675787.1 167625493 5906876 4376674..4378566 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRA3375 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4378566 5906876 Shal_3587 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis sensory transducer YP_001675787.1 4376674 D 458817 CDS YP_001675788.1 167625494 5906852 complement(4378660..4380399) 1 NC_010334.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 4380399 5906852 Shal_3588 Shewanella halifaxensis HAW-EB4 cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_001675788.1 4378660 R 458817 CDS YP_001675789.1 167625495 5906853 complement(4380396..4382192) 1 NC_010334.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 4382192 5906853 Shal_3589 Shewanella halifaxensis HAW-EB4 cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_001675789.1 4380396 R 458817 CDS YP_001675790.1 167625496 5906841 complement(4382561..4382908) 1 NC_010334.1 KEGG: slo:Shew_0605 hypothetical protein; hypothetical protein 4382908 5906841 Shal_3590 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675790.1 4382561 R 458817 CDS YP_001675791.1 167625497 5906842 4383598..4385076 1 NC_010334.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shw:Sputw3181_0836 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 4385076 5906842 Shal_3591 Shewanella halifaxensis HAW-EB4 DEAD/DEAH box helicase YP_001675791.1 4383598 D 458817 CDS YP_001675792.1 167625498 5906699 complement(4385282..4386691) 1 NC_010334.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 4386691 5906699 Shal_3592 Shewanella halifaxensis HAW-EB4 ATP-dependent RNA helicase DbpA YP_001675792.1 4385282 R 458817 CDS YP_001675793.1 167625499 5906700 complement(4387078..4387773) 1 NC_010334.1 KEGG: dvl:Dvul_0140 lipoprotein, putative; hypothetical protein 4387773 5906700 Shal_3593 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675793.1 4387078 R 458817 CDS YP_001675794.1 167625500 5906682 complement(4387937..4388155) 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: sbm:Shew185_0864 hypothetical protein; hypothetical protein 4388155 5906682 Shal_3594 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675794.1 4387937 R 458817 CDS YP_001675795.1 167625501 5906683 4388246..4390219 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbl:Sbal_3476 ABC transporter related; ABC transporter-like protein 4390219 5906683 Shal_3595 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001675795.1 4388246 D 458817 CDS YP_001675796.1 167625502 5906640 4390259..4390783 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: slo:Shew_0592 hypothetical protein; hypothetical protein 4390783 5906640 Shal_3596 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675796.1 4390259 D 458817 CDS YP_001675797.1 167625503 5906641 complement(4391010..4392605) 1 NC_010334.1 PFAM: glucose-methanol-choline oxidoreductase; KEGG: sbm:Shew185_0857 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 4392605 5906641 Shal_3597 Shewanella halifaxensis HAW-EB4 glucose-methanol-choline oxidoreductase YP_001675797.1 4391010 R 458817 CDS YP_001675798.1 167625504 5906627 complement(4392654..4393172) 1 NC_010334.1 KEGG: slo:Shew_0590 hypothetical protein; hypothetical protein 4393172 5906627 Shal_3598 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675798.1 4392654 R 458817 CDS YP_001675799.1 167625505 5906628 4393340..4394320 1 NC_010334.1 KEGG: sbm:Shew185_0855 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 4394320 5906628 Shal_3599 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase fold protein YP_001675799.1 4393340 D 458817 CDS YP_001675800.1 167625506 5906611 4394314..4394568 1 NC_010334.1 PFAM: protein of unknown function UPF0270; KEGG: saz:Sama_3001 protein of unknown function UPF0270; hypothetical protein 4394568 5906611 Shal_3600 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675800.1 4394314 D 458817 CDS YP_001675801.1 167625507 5906612 4394721..4395608 1 NC_010334.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: slo:Shew_0587 phosphoribulokinase; phosphoribulokinase 4395608 5906612 Shal_3601 Shewanella halifaxensis HAW-EB4 phosphoribulokinase YP_001675801.1 4394721 D 458817 CDS YP_001675802.1 167625508 5906499 complement(4396273..4397055) 1 NC_010334.1 KEGG: sbl:Sbal_0579 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 4397055 5906499 Shal_3602 Shewanella halifaxensis HAW-EB4 Sel1 domain-containing protein YP_001675802.1 4396273 R 458817 CDS YP_001675803.1 167625509 5906500 4397510..4398145 1 NC_010334.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 4398145 5906500 Shal_3603 Shewanella halifaxensis HAW-EB4 cAMP-regulatory protein YP_001675803.1 4397510 D 458817 CDS YP_001675804.1 167625510 5906393 4398229..4398564 1 NC_010334.1 KEGG: shn:Shewana3_0616 hypothetical protein; hypothetical protein 4398564 5906393 Shal_3604 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675804.1 4398229 D 458817 CDS YP_001675805.1 167625511 5906394 4398674..4399348 1 NC_010334.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_0583 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4399348 5906394 Shal_3605 Shewanella halifaxensis HAW-EB4 two component transcriptional regulator YP_001675805.1 4398674 D 458817 CDS YP_001675806.1 167625512 5906283 4399345..4400670 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_0582 integral membrane sensor signal transduction histidine kinase; histidine kinase 4400670 5906283 Shal_3606 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001675806.1 4399345 D 458817 CDS YP_001675807.1 167625513 5906284 complement(4400831..4401631) 1 NC_010334.1 KEGG: slo:Shew_0581 hypothetical protein; hypothetical protein 4401631 5906284 Shal_3607 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675807.1 4400831 R 458817 CDS YP_001675808.1 167625514 5906268 complement(4401774..4403234) 1 NC_010334.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 4403234 astD 5906268 astD Shewanella halifaxensis HAW-EB4 succinylglutamic semialdehyde dehydrogenase YP_001675808.1 4401774 R 458817 CDS YP_001675809.1 167625515 5906269 complement(4403244..4404263) 1 NC_010334.1 PFAM: arginine N-succinyltransferase beta subunit; KEGG: slo:Shew_0579 arginine N-succinyltransferase; arginine N-succinyltransferase 4404263 5906269 Shal_3609 Shewanella halifaxensis HAW-EB4 arginine N-succinyltransferase YP_001675809.1 4403244 R 458817 CDS YP_001675810.1 167625516 5906105 complement(4404397..4405614) 1 NC_010334.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 4405614 argD 5906105 argD Shewanella halifaxensis HAW-EB4 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_001675810.1 4404397 R 458817 CDS YP_001675811.1 167625517 5906106 complement(4406274..4407416) 1 NC_010334.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: shn:Shewana3_0608 putative signal transduction protein; putative signal transduction protein 4407416 5906106 Shal_3611 Shewanella halifaxensis HAW-EB4 putative signal transduction protein YP_001675811.1 4406274 R 458817 CDS YP_001675812.1 167625518 5906094 complement(4407601..4410105) 1 NC_010334.1 PFAM: peptidase S15; peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: slo:Shew_0576 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 4410105 5906094 Shal_3612 Shewanella halifaxensis HAW-EB4 peptidase S9 prolyl oligopeptidase YP_001675812.1 4407601 R 458817 CDS YP_001675813.1 167625519 5906095 complement(4410457..4411029) 1 NC_010334.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: she:Shewmr4_0607 glutamine amidotransferase of anthranilate synthase; glutamine amidotransferase of anthranilate synthase 4411029 5906095 Shal_3613 Shewanella halifaxensis HAW-EB4 glutamine amidotransferase of anthranilate synthase YP_001675813.1 4410457 R 458817 CDS YP_001675814.1 167625520 5906046 complement(4411102..4412388) 1 NC_010334.1 KEGG: dps:DP2970 hypothetical protein; hypothetical protein 4412388 5906046 Shal_3614 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675814.1 4411102 R 458817 CDS YP_001675815.1 167625521 5906047 complement(4412391..4413032) 1 NC_010334.1 TIGRFAM: TonB family protein; KEGG: dps:DP2971 similar to TonB protein; TonB family protein 4413032 5906047 Shal_3615 Shewanella halifaxensis HAW-EB4 TonB family protein YP_001675815.1 4412391 R 458817 CDS YP_001675816.1 167625522 5906038 complement(4413032..4413433) 1 NC_010334.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dps:DP2972 biopolymer transport protein (ExbD2); biopolymer transport protein ExbD/TolR 4413433 5906038 Shal_3616 Shewanella halifaxensis HAW-EB4 biopolymer transport protein ExbD/TolR YP_001675816.1 4413032 R 458817 CDS YP_001675817.1 167625523 5906039 complement(4413426..4413944) 1 NC_010334.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dps:DP2973 similar to biopolymer transport protein (ExbB); MotA/TolQ/ExbB proton channel 4413944 5906039 Shal_3617 Shewanella halifaxensis HAW-EB4 MotA/TolQ/ExbB proton channel YP_001675817.1 4413426 R 458817 CDS YP_001675818.1 167625524 5905982 complement(4413931..4415388) 1 NC_010334.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dps:DP2974 similar to transport protein TolQ; MotA/TolQ/ExbB proton channel 4415388 5905982 Shal_3618 Shewanella halifaxensis HAW-EB4 MotA/TolQ/ExbB proton channel YP_001675818.1 4413931 R 458817 CDS YP_001675819.1 167625525 5905983 complement(4415388..4416176) 1 NC_010334.1 KEGG: dps:DP2975 hypothetical protein; hypothetical protein 4416176 5905983 Shal_3619 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675819.1 4415388 R 458817 CDS YP_001675820.1 167625526 5905393 complement(4416173..4416997) 1 NC_010334.1 KEGG: dps:DP2976 hypothetical protein; hypothetical protein 4416997 5905393 Shal_3620 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675820.1 4416173 R 458817 CDS YP_001675821.1 167625527 5905394 complement(4416994..4417686) 1 NC_010334.1 KEGG: dps:DP2977 hypothetical protein; hypothetical protein 4417686 5905394 Shal_3621 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675821.1 4416994 R 458817 CDS YP_001675822.1 167625528 5905302 complement(4417716..4419026) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP2978 related to iron (III) ABC transporter, ATP-binding protein; ABC transporter-like protein 4419026 5905302 Shal_3622 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001675822.1 4417716 R 458817 CDS YP_001675823.1 167625529 5905303 complement(4419026..4420072) 1 NC_010334.1 PFAM: transport system permease protein; KEGG: dps:DP2979 probable iron (III) ABC transporter, permease protein; transport system permease 4420072 5905303 Shal_3623 Shewanella halifaxensis HAW-EB4 transport system permease YP_001675823.1 4419026 R 458817 CDS YP_001675824.1 167625530 5905206 complement(4420063..4421061) 1 NC_010334.1 PFAM: periplasmic binding protein; KEGG: dps:DP2980 probable iron (III) ABC transporter, periplasmic-binding protein; periplasmic-binding protein 4421061 5905206 Shal_3624 Shewanella halifaxensis HAW-EB4 periplasmic-binding protein YP_001675824.1 4420063 R 458817 CDS YP_001675825.1 167625531 5905207 complement(4421071..4423107) 1 NC_010334.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dps:DP2981 related to TonB dependent outer membrane receptor; TonB-dependent receptor plug 4423107 5905207 Shal_3625 Shewanella halifaxensis HAW-EB4 TonB-dependent receptor plug YP_001675825.1 4421071 R 458817 CDS YP_001675826.1 167625532 5905119 complement(4423599..4424069) 1 NC_010334.1 PFAM: Stringent starvation protein B; KEGG: slo:Shew_0574 stringent starvation protein B; ClpXP protease specificity-enhancing factor 4424069 5905119 Shal_3626 Shewanella halifaxensis HAW-EB4 ClpXP protease specificity-enhancing factor YP_001675826.1 4423599 R 458817 CDS YP_001675827.1 167625533 5905120 complement(4424069..4424698) 1 NC_010334.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 4424698 sspA 5905120 sspA Shewanella halifaxensis HAW-EB4 stringent starvation protein A YP_001675827.1 4424069 R 458817 CDS YP_001675828.1 167625534 5905076 complement(4424808..4425503) 1 NC_010334.1 PFAM: cytochrome c1; KEGG: sdn:Sden_3199 cytochrome c1; cytochrome c1 4425503 5905076 Shal_3628 Shewanella halifaxensis HAW-EB4 cytochrome c1 YP_001675828.1 4424808 R 458817 CDS YP_001675829.1 167625535 5905077 complement(4425503..4426717) 1 NC_010334.1 PFAM: Cytochrome b/b6 domain; KEGG: slo:Shew_0571 cytochrome b/b6, N-terminal domain; cytochrome b/b6 domain-containing protein 4426717 5905077 Shal_3629 Shewanella halifaxensis HAW-EB4 cytochrome b/b6 domain-containing protein YP_001675829.1 4425503 R 458817 CDS YP_001675830.1 167625536 5905020 complement(4426717..4427307) 1 NC_010334.1 KEGG: slo:Shew_0570 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 4427307 5905020 Shal_3630 Shewanella halifaxensis HAW-EB4 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_001675830.1 4426717 R 458817 CDS YP_001675831.1 167625537 5905021 complement(4427720..4428598) 1 NC_010334.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: shn:Shewana3_0600 HflC protein; HflC protein 4428598 5905021 Shal_3631 Shewanella halifaxensis HAW-EB4 HflC protein YP_001675831.1 4427720 R 458817 CDS YP_001675832.1 167625538 5905002 complement(4428602..4429747) 1 NC_010334.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: sbm:Shew185_3765 HflK protein; HflK protein 4429747 5905002 Shal_3632 Shewanella halifaxensis HAW-EB4 HflK protein YP_001675832.1 4428602 R 458817 CDS YP_001675833.1 167625539 5905003 complement(4429797..4431092) 1 NC_010334.1 TIGRFAM: GTP1/OBG protein; PFAM: GTP-binding protein HSR1-related; KEGG: slo:Shew_0567 GTP-binding protein, HSR1-related; GTP1/OBG protein 4431092 5905003 Shal_3633 Shewanella halifaxensis HAW-EB4 GTP1/OBG protein YP_001675833.1 4429797 R 458817 CDS YP_001675834.1 167625540 5904873 complement(4431113..4431391) 1 NC_010334.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: slo:Shew_0566 RNA chaperone Hfq; RNA chaperone Hfq 4431391 5904873 Shal_3634 Shewanella halifaxensis HAW-EB4 RNA chaperone Hfq YP_001675834.1 4431113 R 458817 CDS YP_001675835.1 167625541 5904874 complement(4431485..4432411) 1 NC_010334.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 4432411 miaA 5904874 miaA Shewanella halifaxensis HAW-EB4 tRNA delta(2)-isopentenylpyrophosphate transferase YP_001675835.1 4431485 R 458817 CDS YP_001675836.1 167625542 5904709 complement(4432401..4434314) 1 NC_010334.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 4434314 mutL 5904709 mutL Shewanella halifaxensis HAW-EB4 DNA mismatch repair protein YP_001675836.1 4432401 R 458817 CDS YP_001675837.1 167625543 5904710 complement(4434332..4435654) 1 NC_010334.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: slo:Shew_0563 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 4435654 5904710 Shal_3637 Shewanella halifaxensis HAW-EB4 N-acetylmuramoyl-L-alanine amidase YP_001675837.1 4434332 R 458817 CDS YP_001675838.1 167625544 5904713 complement(4435638..4436120) 1 NC_010334.1 PFAM: protein of unknown function UPF0079; KEGG: shn:Shewana3_0593 protein of unknown function UPF0079; hypothetical protein 4436120 5904713 Shal_3638 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675838.1 4435638 R 458817 CDS YP_001675839.1 167625545 5904714 complement(4436196..4437674) 1 NC_010334.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: spc:Sputcn32_3285 carbohydrate kinase, YjeF related protein; carbohydrate kinase 4437674 5904714 Shal_3639 Shewanella halifaxensis HAW-EB4 carbohydrate kinase YP_001675839.1 4436196 R 458817 CDS YP_001675840.1 167625546 5904664 complement(4437881..4438336) 1 NC_010334.1 KEGG: saz:Sama_3031 hypothetical protein; hypothetical protein 4438336 5904664 Shal_3640 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675840.1 4437881 R 458817 CDS YP_001675841.1 167625547 5904247 complement(4439674..4440219) 1 NC_010334.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4440219 5904247 Shal_3641 Shewanella halifaxensis HAW-EB4 oligoribonuclease YP_001675841.1 4439674 R 458817 CDS YP_001675842.1 167625548 5906869 4440332..4441396 1 NC_010334.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 4441396 5906869 Shal_3642 Shewanella halifaxensis HAW-EB4 ribosome-associated GTPase YP_001675842.1 4440332 D 458817 CDS YP_001675843.1 167625549 5906870 4441547..4442410 1 NC_010334.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4442410 psd 5906870 psd Shewanella halifaxensis HAW-EB4 phosphatidylserine decarboxylase YP_001675843.1 4441547 D 458817 CDS YP_001675844.1 167625550 5903431 4442425..4443303 1 NC_010334.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbl:Sbal_0548 protein of unknown function DUF6, transmembrane; hypothetical protein 4443303 5903431 Shal_3644 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675844.1 4442425 D 458817 CDS YP_001675845.1 167625551 5903432 4443373..4446561 1 NC_010334.1 PFAM: MscS Mechanosensitive ion channel; KEGG: slo:Shew_0555 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4446561 5903432 Shal_3645 Shewanella halifaxensis HAW-EB4 mechanosensitive ion channel protein MscS YP_001675845.1 4443373 D 458817 CDS YP_001675846.1 167625552 5904226 4446586..4447281 1 NC_010334.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: she:Shewmr4_0586 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 4447281 5904226 Shal_3646 Shewanella halifaxensis HAW-EB4 glycerophosphoryl diester phosphodiesterase YP_001675846.1 4446586 D 458817 CDS YP_001675847.1 167625553 5904227 complement(4447367..4447630) 1 NC_010334.1 KEGG: shw:Sputw3181_0648 hypothetical protein; hypothetical protein 4447630 5904227 Shal_3647 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675847.1 4447367 R 458817 CDS YP_001675848.1 167625554 5903304 4447760..4448686 1 NC_010334.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: slo:Shew_0553 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 4448686 5903304 Shal_3648 Shewanella halifaxensis HAW-EB4 D-isomer specific 2-hydroxyacid dehydrogenase YP_001675848.1 4447760 D 458817 CDS YP_001675849.1 167625555 5903305 4448865..4449056 1 NC_010334.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: shn:Shewana3_0581 BFD domain protein (2Fe-2S)-binding domain protein; BFD/(2Fe-2S)-binding domain-containing protein 4449056 5903305 Shal_3649 Shewanella halifaxensis HAW-EB4 BFD/(2Fe-2S)-binding domain-containing protein YP_001675849.1 4448865 D 458817 CDS YP_001675850.1 167625556 5904261 complement(4449127..4451394) 1 NC_010334.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 4451394 5904261 Shal_3650 Shewanella halifaxensis HAW-EB4 DNA topoisomerase IV subunit A YP_001675850.1 4449127 R 458817 CDS YP_001675851.1 167625557 5904262 complement(4451394..4452536) 1 NC_010334.1 KEGG: slo:Shew_0550 L-sorbosone dehydrogenase, putative; L-sorbosone dehydrogenase 4452536 5904262 Shal_3651 Shewanella halifaxensis HAW-EB4 L-sorbosone dehydrogenase YP_001675851.1 4451394 R 458817 CDS YP_001675852.1 167625558 5904286 complement(4452582..4454477) 1 NC_010334.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 4454477 5904286 Shal_3652 Shewanella halifaxensis HAW-EB4 DNA topoisomerase IV subunit B YP_001675852.1 4452582 R 458817 CDS YP_001675853.1 167625559 5904287 complement(4454524..4455096) 1 NC_010334.1 PFAM: protein of unknown function UPF0227; KEGG: slo:Shew_0548 protein of unknown function UPF0227; hypothetical protein 4455096 5904287 Shal_3653 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675853.1 4454524 R 458817 CDS YP_001675854.1 167625560 5905532 complement(4455124..4455963) 1 NC_010334.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase domain protein; KEGG: shm:Shewmr7_0756 calcineurin phosphoesterase C-terminal domain protein; calcineurin phosphoesterase domain-containing protein 4455963 5905532 Shal_3654 Shewanella halifaxensis HAW-EB4 calcineurin phosphoesterase domain-containing protein YP_001675854.1 4455124 R 458817 CDS YP_001675855.1 167625561 5905533 complement(4455985..4456419) 1 NC_010334.1 PFAM: protein of unknown function DUF1249; KEGG: shw:Sputw3181_3405 protein of unknown function DUF1249; hypothetical protein 4456419 5905533 Shal_3655 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675855.1 4455985 R 458817 CDS YP_001675856.1 167625562 5906953 complement(4456472..4457083) 1 NC_010334.1 PFAM: NUDIX hydrolase; KEGG: slo:Shew_0545 ADP-ribose diphosphatase; NUDIX hydrolase 4457083 5906953 Shal_3656 Shewanella halifaxensis HAW-EB4 NUDIX hydrolase YP_001675856.1 4456472 R 458817 CDS YP_001675857.1 167625563 5906954 4457374..4458681 1 NC_010334.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 4458681 tolC 5906954 tolC Shewanella halifaxensis HAW-EB4 outer membrane channel protein YP_001675857.1 4457374 D 458817 CDS YP_001675858.1 167625564 5906572 complement(4458750..4459487) 1 NC_010334.1 KEGG: sbm:Shew185_0780 hypothetical protein; hypothetical protein 4459487 5906572 Shal_3658 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675858.1 4458750 R 458817 CDS YP_001675859.1 167625565 5906573 complement(4459490..4460461) 1 NC_010334.1 KEGG: slo:Shew_0542 hypothetical protein; hypothetical protein 4460461 5906573 Shal_3659 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675859.1 4459490 R 458817 CDS YP_001675860.1 167625566 5905938 complement(4460474..4460953) 1 NC_010334.1 PFAM: protein of unknown function DUF461; KEGG: spc:Sputcn32_0765 protein of unknown function DUF461; hypothetical protein 4460953 5905938 Shal_3660 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675860.1 4460474 R 458817 CDS YP_001675861.1 167625567 5905939 4460987..4461724 1 NC_010334.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shn:Shewana3_0721 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 4461724 5905939 Shal_3661 Shewanella halifaxensis HAW-EB4 enoyl-CoA hydratase/isomerase YP_001675861.1 4460987 D 458817 CDS YP_001675862.1 167625568 5906796 complement(4461903..4462103) 1 NC_010334.1 PFAM: PspC domain protein; KEGG: slo:Shew_0538 phage shock protein C, PspC; phage shock protein C 4462103 5906796 Shal_3662 Shewanella halifaxensis HAW-EB4 phage shock protein C YP_001675862.1 4461903 R 458817 CDS YP_001675863.1 167625569 5906797 complement(4462232..4462540) 1 NC_010334.1 KEGG: shn:Shewana3_0719 hypothetical protein; hypothetical protein 4462540 5906797 Shal_3663 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675863.1 4462232 R 458817 CDS YP_001675864.1 167625570 5905995 complement(4462801..4463787) 1 NC_010334.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: slo:Shew_0536 TIM-barrel protein, YjbN family; tRNA-dihydrouridine synthase A 4463787 5905995 Shal_3664 Shewanella halifaxensis HAW-EB4 tRNA-dihydrouridine synthase A YP_001675864.1 4462801 R 458817 CDS YP_001675865.1 167625571 5905996 complement(4464022..4464972) 1 NC_010334.1 PFAM: regulatory protein LysR; KEGG: son:SO_4571 transcriptional regulator, LysR family; LysR family transcriptional regulator 4464972 5905996 Shal_3665 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001675865.1 4464022 R 458817 CDS YP_001675866.1 167625572 5904252 complement(4464956..4465933) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_3153 transcriptional regulator, LysR family; LysR family transcriptional regulator 4465933 5904252 Shal_3666 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001675866.1 4464956 R 458817 CDS YP_001675867.1 167625573 5904253 4466343..4468493 1 NC_010334.1 KEGG: son:SO_1779 decaheme cytochrome c; decaheme cytochrome c 4468493 5904253 Shal_3667 Shewanella halifaxensis HAW-EB4 decaheme cytochrome c YP_001675867.1 4466343 D 458817 CDS YP_001675868.1 167625574 5903588 complement(4468723..4470018) 1 NC_010334.1 KEGG: slo:Shew_3276 hypothetical protein; hypothetical protein 4470018 5903588 Shal_3668 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675868.1 4468723 R 458817 CDS YP_001675869.1 167625575 5903589 complement(4470117..4471193) 1 NC_010334.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4471193 alr 5903589 alr Shewanella halifaxensis HAW-EB4 alanine racemase YP_001675869.1 4470117 R 458817 CDS YP_001675870.1 167625576 5904219 complement(4471286..4472692) 1 NC_010334.1 KEGG: slo:Shew_3278 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; replicative DNA helicase 4472692 5904219 Shal_3670 Shewanella halifaxensis HAW-EB4 replicative DNA helicase YP_001675870.1 4471286 R 458817 CDS YP_001675871.1 167625577 5904220 4472816..4475041 1 NC_010334.1 KEGG: slo:Shew_3279 hypothetical protein; hypothetical protein 4475041 5904220 Shal_3671 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675871.1 4472816 D 458817 CDS YP_001675872.1 167625578 5904176 complement(4475475..4475927) 1 NC_010334.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4475927 rplI 5904176 rplI Shewanella halifaxensis HAW-EB4 50S ribosomal protein L9 YP_001675872.1 4475475 R 458817 CDS YP_001675873.1 167625579 5904177 complement(4475955..4476182) 1 NC_010334.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4476182 rpsR 5904177 rpsR Shewanella halifaxensis HAW-EB4 30S ribosomal protein S18 YP_001675873.1 4475955 R 458817 CDS YP_001675874.1 167625580 5903954 complement(4476194..4476499) 1 NC_010334.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4476499 5903954 Shal_3674 Shewanella halifaxensis HAW-EB4 primosomal replication protein N YP_001675874.1 4476194 R 458817 CDS YP_001675875.1 167625581 5903955 complement(4476508..4476921) 1 NC_010334.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 4476921 rpsF 5903955 rpsF Shewanella halifaxensis HAW-EB4 30S ribosomal protein S6 YP_001675875.1 4476508 R 458817 CDS YP_001675876.1 167625582 5905580 4477202..4477996 1 NC_010334.1 PFAM: protein of unknown function DUF481; KEGG: shw:Sputw3181_3423 protein of unknown function DUF481; hypothetical protein 4477996 5905580 Shal_3676 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675876.1 4477202 D 458817 CDS YP_001675877.1 167625583 5905581 complement(4478216..4478956) 1 NC_010334.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4478956 5905581 Shal_3677 Shewanella halifaxensis HAW-EB4 23S rRNA (guanosine-2'-O-)-methyltransferase YP_001675877.1 4478216 R 458817 CDS YP_001675878.1 167625584 5906741 complement(4478957..4481440) 1 NC_010334.1 KEGG: slo:Shew_3289 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R 4481440 5906741 Shal_3678 Shewanella halifaxensis HAW-EB4 ribonuclease R YP_001675878.1 4478957 R 458817 CDS YP_001675879.1 167625585 5906742 complement(4481482..4482105) 1 NC_010334.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: slo:Shew_3290 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 4482105 5906742 Shal_3679 Shewanella halifaxensis HAW-EB4 Sel1 domain-containing protein YP_001675879.1 4481482 R 458817 CDS YP_001675880.1 167625586 5903891 complement(4482281..4483576) 1 NC_010334.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 4483576 5903891 Shal_3680 Shewanella halifaxensis HAW-EB4 adenylosuccinate synthetase YP_001675880.1 4482281 R 458817 CDS YP_001675881.1 167625587 5903892 complement(4483643..4483885) 1 NC_010334.1 KEGG: slo:Shew_3292 hypothetical protein; hypothetical protein 4483885 5903892 Shal_3681 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675881.1 4483643 R 458817 CDS YP_001675882.1 167625588 5903807 complement(4484217..4484609) 1 NC_010334.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 4484609 rpsI 5903807 rpsI Shewanella halifaxensis HAW-EB4 30S ribosomal protein S9 YP_001675882.1 4484217 R 458817 CDS YP_001675883.1 167625589 5903808 complement(4484624..4485055) 1 NC_010334.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 4485055 rplM 5903808 rplM Shewanella halifaxensis HAW-EB4 50S ribosomal protein L13 YP_001675883.1 4484624 R 458817 CDS YP_001675884.1 167625590 5904689 complement(4485251..4486360) 1 NC_010334.1 PFAM: AFG1-family ATPase; KEGG: slo:Shew_3295 AFG1-family ATPase; AFG1 family ATPase 4486360 5904689 Shal_3684 Shewanella halifaxensis HAW-EB4 AFG1 family ATPase YP_001675884.1 4485251 R 458817 CDS YP_001675885.1 167625591 5904690 4486669..4487025 1 NC_010334.1 PFAM: protein of unknown function DUF1043; hypothetical protein 4487025 5904690 Shal_3685 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675885.1 4486669 D 458817 CDS YP_001675886.1 167625592 5904631 4487195..4488550 1 NC_010334.1 KEGG: slo:Shew_3296 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 4488550 5904631 Shal_3686 Shewanella halifaxensis HAW-EB4 protease Do YP_001675886.1 4487195 D 458817 CDS YP_001675887.1 167625593 5904632 4488708..4489790 1 NC_010334.1 TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO_3943 protease DegS; periplasmic serine protease DegS 4489790 5904632 Shal_3687 Shewanella halifaxensis HAW-EB4 periplasmic serine protease DegS YP_001675887.1 4488708 D 458817 CDS YP_001675888.1 167625594 5904462 complement(4490483..4492162) 1 NC_010334.1 KEGG: ppd:Ppro_3498 hypothetical protein; hypothetical protein 4492162 5904462 Shal_3689 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675888.1 4490483 R 458817 CDS YP_001675889.1 167625595 5905732 complement(4492353..4492991) 1 NC_010334.1 PFAM: response regulator receiver; KEGG: vha:VIBHAR_05158 hypothetical protein; response regulator receiver protein 4492991 5905732 Shal_3690 Shewanella halifaxensis HAW-EB4 response regulator receiver protein YP_001675889.1 4492353 R 458817 CDS YP_001675890.1 167625596 5905733 complement(4492991..4494385) 1 NC_010334.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: vha:VIBHAR_05159 hypothetical protein; histidine kinase 4494385 5905733 Shal_3691 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001675890.1 4492991 R 458817 CDS YP_001675891.1 167625597 5905905 complement(4494527..4495789) 1 NC_010334.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 4495789 5905905 Shal_3692 Shewanella halifaxensis HAW-EB4 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001675891.1 4494527 R 458817 CDS YP_001675892.1 167625598 5905906 complement(4495811..4496062) 1 NC_010334.1 PFAM: BolA family protein; KEGG: slo:Shew_3299 BolA family protein; BolA family protein 4496062 5905906 Shal_3693 Shewanella halifaxensis HAW-EB4 BolA family protein YP_001675892.1 4495811 R 458817 CDS YP_001675893.1 167625599 5906340 complement(4496076..4496369) 1 NC_010334.1 KEGG: shm:Shewmr7_3339 SpoIIAA family protein; SpoIIAA family protein 4496369 5906340 Shal_3694 Shewanella halifaxensis HAW-EB4 SpoIIAA family protein YP_001675893.1 4496076 R 458817 CDS YP_001675894.1 167625600 5906341 complement(4496369..4497040) 1 NC_010334.1 PFAM: toluene tolerance family protein; KEGG: sbl:Sbal_3659 toluene tolerance family protein; toluene tolerance family protein 4497040 5906341 Shal_3695 Shewanella halifaxensis HAW-EB4 toluene tolerance family protein YP_001675894.1 4496369 R 458817 CDS YP_001675895.1 167625601 5906158 complement(4497073..4497543) 1 NC_010334.1 PFAM: Mammalian cell entry related domain protein; KEGG: shw:Sputw3181_3450 mammalian cell entry related domain protein; hypothetical protein 4497543 5906158 Shal_3696 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675895.1 4497073 R 458817 CDS YP_001675896.1 167625602 5906159 complement(4497617..4498402) 1 NC_010334.1 PFAM: protein of unknown function DUF140; KEGG: slo:Shew_3303 protein of unknown function DUF140; hypothetical protein 4498402 5906159 Shal_3697 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675896.1 4497617 R 458817 CDS YP_001675897.1 167625603 5905226 complement(4498389..4499201) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3304 ABC transporter-related protein; ABC transporter-like protein 4499201 5905226 Shal_3698 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001675897.1 4498389 R 458817 CDS YP_001675898.1 167625604 5905227 4499377..4500336 1 NC_010334.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: slo:Shew_3305 Na+/Ca+ antiporter, CaCA family; CaCA family Na(+)/Ca(+) antiporter 4500336 5905227 Shal_3699 Shewanella halifaxensis HAW-EB4 CaCA family Na(+)/Ca(+) antiporter YP_001675898.1 4499377 D 458817 CDS YP_001675899.1 167625605 5904396 4500383..4501360 1 NC_010334.1 KEGG: slo:Shew_3306 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 4501360 5904396 Shal_3700 Shewanella halifaxensis HAW-EB4 KpsF/GutQ family protein YP_001675899.1 4500383 D 458817 CDS YP_001675900.1 167625606 5904397 4501362..4501913 1 NC_010334.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4501913 5904397 Shal_3701 Shewanella halifaxensis HAW-EB4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_001675900.1 4501362 D 458817 CDS YP_001675901.1 167625607 5903188 4501910..4502467 1 NC_010334.1 PFAM: protein of unknown function DUF1239; KEGG: sbm:Shew185_0689 protein of unknown function DUF1239; hypothetical protein 4502467 5903188 Shal_3702 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675901.1 4501910 D 458817 CDS YP_001675902.1 167625608 5903189 4502539..4503096 1 NC_010334.1 TIGRFAM: Cell envelope biogenesis YhbN; PFAM: OstA family protein; KEGG: slo:Shew_3309 OstA family protein; cell envelope biogenesis YhbN 4503096 5903189 Shal_3703 Shewanella halifaxensis HAW-EB4 cell envelope biogenesis YhbN YP_001675902.1 4502539 D 458817 CDS YP_001675903.1 167625609 5906739 4503093..4503824 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3310 ABC transporter-related protein; ABC transporter-like protein 4503824 5906739 Shal_3704 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001675903.1 4503093 D 458817 CDS YP_001675904.1 167625610 5906740 4503961..4505424 1 NC_010334.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 4505424 5906740 Shal_3705 Shewanella halifaxensis HAW-EB4 RNA polymerase factor sigma-54 YP_001675904.1 4503961 D 458817 CDS YP_001675905.1 167625611 5904994 4505454..4505741 1 NC_010334.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: slo:Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30EA 4505741 5904994 Shal_3706 Shewanella halifaxensis HAW-EB4 sigma 54 modulation protein/30S ribosomal protein S30EA YP_001675905.1 4505454 D 458817 CDS YP_001675906.1 167625612 5904995 4505744..4506187 1 NC_010334.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: slo:Shew_3313 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 4506187 5904995 Shal_3707 Shewanella halifaxensis HAW-EB4 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_001675906.1 4505744 D 458817 CDS YP_001675907.1 167625613 5905097 4506396..4507250 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: she:Shewmr4_0670 uncharacterized P-loop ATPase protein UPF0042; hypothetical protein 4507250 5905097 Shal_3708 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675907.1 4506396 D 458817 CDS YP_001675908.1 167625614 5905098 4507237..4507512 1 NC_010334.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: shw:Sputw3181_3462 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 4507512 5905098 Shal_3709 Shewanella halifaxensis HAW-EB4 phosphotransferase system, phosphocarrier protein HPr YP_001675908.1 4507237 D 458817 CDS YP_001675909.1 167625615 5906003 4507604..4508968 1 NC_010334.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: slo:Shew_3316 magnesium transporter; magnesium transporter 4508968 5906003 Shal_3710 Shewanella halifaxensis HAW-EB4 magnesium transporter YP_001675909.1 4507604 D 458817 CDS YP_001675910.1 167625616 5906004 complement(4509025..4509828) 1 NC_010334.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: slo:Shew_2687 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdate ABC transporter periplasmic molybdate-binding protein 4509828 5906004 Shal_3711 Shewanella halifaxensis HAW-EB4 molybdate ABC transporter periplasmic molybdate-binding protein YP_001675910.1 4509025 R 458817 CDS YP_001675911.1 167625617 5905809 complement(4510145..4510819) 1 NC_010334.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: slo:Shew_0908 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 4510819 5905809 Shal_3712 Shewanella halifaxensis HAW-EB4 OmpA/MotB domain-containing protein YP_001675911.1 4510145 R 458817 CDS YP_001675912.1 167625618 5905810 4511270..4511491 1 NC_010334.1 KEGG: spc:Sputcn32_0707 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 4511491 5905810 Shal_3713 Shewanella halifaxensis HAW-EB4 transposase IS3/IS911 family protein YP_001675912.1 4511270 D 458817 CDS YP_001675913.1 167625619 5905465 complement(4511640..4513007) 1 NC_010334.1 KEGG: slo:Shew_1854 hypothetical protein; hypothetical protein 4513007 5905465 Shal_3714 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675913.1 4511640 R 458817 CDS YP_001675914.1 167625620 5905466 complement(4513214..4514752) 1 NC_010334.1 KEGG: cps:CPS_0069 putative FG-GAP repeat lipoprotein; FG-GAP repeat-containing protein 4514752 5905466 Shal_3715 Shewanella halifaxensis HAW-EB4 FG-GAP repeat-containing protein YP_001675914.1 4513214 R 458817 CDS YP_001675915.1 167625621 5903592 complement(4514946..4515521) 1 NC_010334.1 PFAM: Protein of unknown function DUF676 hydrolase domain protein; PGAP1 family protein; KEGG: slo:Shew_3323 lipase-like; PGAP1 family protein 4515521 5903592 Shal_3716 Shewanella halifaxensis HAW-EB4 PGAP1 family protein YP_001675915.1 4514946 R 458817 CDS YP_001675916.1 167625622 5903593 4515678..4516769 1 NC_010334.1 KEGG: sdn:Sden_3286 hypothetical protein; hypothetical protein 4516769 5903593 Shal_3717 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675916.1 4515678 D 458817 CDS YP_001675917.1 167625623 5906889 4517162..4518331 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1259 transport protein of the major facilitator; major facilitator transporter 4518331 5906889 Shal_3718 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001675917.1 4517162 D 458817 CDS YP_001675918.1 167625624 5906890 4518646..4519722 1 NC_010334.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 4519722 rumB 5906890 rumB Shewanella halifaxensis HAW-EB4 23S rRNA methyluridine methyltransferase YP_001675918.1 4518646 D 458817 CDS YP_001675919.1 167625625 5906905 4520005..4520214 1 NC_010334.1 PFAM: TOBE domain protein; KEGG: slo:Shew_3338 TOBE domain protein; TOBE domain-containing protein 4520214 5906905 Shal_3720 Shewanella halifaxensis HAW-EB4 TOBE domain-containing protein YP_001675919.1 4520005 D 458817 CDS YP_001675920.1 167625626 5906906 complement(4520293..4520616) 1 NC_010334.1 KEGG: sde:Sde_3292 hypothetical protein; hypothetical protein 4520616 5906906 Shal_3721 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675920.1 4520293 R 458817 CDS YP_001675921.1 167625627 5906845 complement(4520726..4521229) 1 NC_010334.1 KEGG: spc:Sputcn32_0688 hypothetical protein; hypothetical protein 4521229 5906845 Shal_3722 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675921.1 4520726 R 458817 CDS YP_001675922.1 167625628 5906846 complement(4521232..4521522) 1 NC_010334.1 PFAM: protein of unknown function DUF134; KEGG: shw:Sputw3181_3483 protein of unknown function DUF134; hypothetical protein 4521522 5906846 Shal_3723 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675922.1 4521232 R 458817 CDS YP_001675923.1 167625629 5904885 complement(4521789..4522379) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfi:VF0677 putative dipeptide ABC transporter; ABC transporter-like protein 4522379 5904885 Shal_3724 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001675923.1 4521789 R 458817 CDS YP_001675924.1 167625630 5904886 complement(4522363..4523070) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfi:VF0678 oligopeptide transport ATP-binding protein OppD; ABC transporter-like protein 4523070 5904886 Shal_3725 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001675924.1 4522363 R 458817 CDS YP_001675925.1 167625631 5904248 complement(4523070..4523894) 1 NC_010334.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vfi:VF0679 oligopeptide transport system permease protein OppC; binding-protein-dependent transport system inner membrane protein 4523894 5904248 Shal_3726 Shewanella halifaxensis HAW-EB4 binding-protein-dependent transport system inner membrane protein YP_001675925.1 4523070 R 458817 CDS YP_001675926.1 167625632 5904249 complement(4523981..4524958) 1 NC_010334.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: asa:ASA_1795 ABC-type dipeptide/oligopeptide/nickel transporter, permease component; binding-protein-dependent transport system inner membrane protein 4524958 5904249 Shal_3727 Shewanella halifaxensis HAW-EB4 binding-protein-dependent transport system inner membrane protein YP_001675926.1 4523981 R 458817 CDS YP_001675927.1 167625633 5906306 complement(4524955..4526487) 1 NC_010334.1 PFAM: extracellular solute-binding protein family 5; KEGG: vfi:VF0681 oligopeptide-binding protein OppA; extracellular solute-binding protein 4526487 5906306 Shal_3728 Shewanella halifaxensis HAW-EB4 extracellular solute-binding protein YP_001675927.1 4524955 R 458817 CDS YP_001675928.1 167625634 5906307 4526674..4527084 1 NC_010334.1 PFAM: CopG domain protein DNA-binding domain protein; NikR nickel binding; KEGG: ccv:CCV52592_1897 NikR C nickel binding domain family; CopG family transcriptional regulator 4527084 5906307 Shal_3729 Shewanella halifaxensis HAW-EB4 CopG family transcriptional regulator YP_001675928.1 4526674 D 458817 CDS YP_001675929.1 167625635 5904584 complement(4527061..4527291) 1 NC_010334.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbm:Shew185_3172 transcriptional regulator, AraC family; AraC family transcriptional regulator 4527291 5904584 Shal_3730 Shewanella halifaxensis HAW-EB4 AraC family transcriptional regulator YP_001675929.1 4527061 R 458817 CDS YP_001675930.1 167625636 5904585 complement(4527360..4527545) 1 NC_010334.1 KEGG: vha:VIBHAR_04860 hypothetical protein; hypothetical protein 4527545 5904585 Shal_3731 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675930.1 4527360 R 458817 CDS YP_001675931.1 167625637 5904586 4527705..4528502 1 NC_010334.1 KEGG: ppr:PBPRB1967 hypothetical protein; hypothetical protein 4528502 5904586 Shal_3732 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675931.1 4527705 D 458817 CDS YP_001675932.1 167625638 5904587 4528704..4529372 1 NC_010334.1 PFAM: protein of unknown function DUF1275; KEGG: mmw:Mmwyl1_2095 protein of unknown function DUF1275; hypothetical protein 4529372 5904587 Shal_3733 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675932.1 4528704 D 458817 CDS YP_001675933.1 167625639 5905004 complement(4529435..4529929) 1 NC_010334.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: ppr:PBPRA1266 putative peptidyl-prolyl cis-trans isomerase B; cyclophilin type peptidyl-prolyl cis-trans isomerase 4529929 5905004 Shal_3734 Shewanella halifaxensis HAW-EB4 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001675933.1 4529435 R 458817 CDS YP_001675934.1 167625640 5905005 4530294..4531679 1 NC_010334.1 PFAM: aminotransferase class V; KEGG: vpa:VPA1513 ScrA (aminotransferase); class V aminotransferase 4531679 5905005 Shal_3735 Shewanella halifaxensis HAW-EB4 class V aminotransferase YP_001675934.1 4530294 D 458817 CDS YP_001675935.1 167625641 5906819 complement(4531786..4534140) 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: ppr:PBPRB0229 hypothetical ScrC (sensory box/GGDEF familyprotein) (involved in swarmer cell regulation); diguanylate cyclase/phosphodiesterase 4534140 5906819 Shal_3736 Shewanella halifaxensis HAW-EB4 diguanylate cyclase/phosphodiesterase YP_001675935.1 4531786 R 458817 CDS YP_001675936.1 167625642 5906820 complement(4534142..4535080) 1 NC_010334.1 SMART: extracellular solute-binding protein family 3; KEGG: ppr:PBPRB0228 putative ScrB; extracellular solute-binding protein 4535080 5906820 Shal_3737 Shewanella halifaxensis HAW-EB4 extracellular solute-binding protein YP_001675936.1 4534142 R 458817 CDS YP_001675937.1 167625643 5906910 complement(4535423..4535758) 1 NC_010334.1 PFAM: Protein of unknown function DUF1971; KEGG: vfi:VF1779 tellurite resistance protein TehB; hypothetical protein 4535758 5906910 Shal_3738 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675937.1 4535423 R 458817 CDS YP_001675938.1 167625644 5906911 complement(4535819..4537012) 1 NC_010334.1 catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 4537012 5906911 Shal_3739 Shewanella halifaxensis HAW-EB4 nitric oxide reductase YP_001675938.1 4535819 R 458817 CDS YP_001675939.1 167625645 5906055 complement(4536984..4538474) 1 NC_010334.1 detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 4538474 5906055 Shal_3740 Shewanella halifaxensis HAW-EB4 anaerobic nitric oxide reductase flavorubredoxin YP_001675939.1 4536984 R 458817 CDS YP_001675940.1 167625646 5906056 complement(4538797..4540347) 1 NC_010334.1 KEGG: rba:RB6211 hypothetical protein; hypothetical protein 4540347 5906056 Shal_3741 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675940.1 4538797 R 458817 CDS YP_001675941.1 167625647 5906204 complement(4540709..4541590) 1 NC_010334.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: cps:CPS_4655 transcriptional regulator, AraC family; AraC family transcriptional regulator 4541590 5906204 Shal_3742 Shewanella halifaxensis HAW-EB4 AraC family transcriptional regulator YP_001675941.1 4540709 R 458817 CDS YP_001675942.1 167625648 5906205 complement(4541765..4542856) 1 NC_010334.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 4542856 5906205 Shal_3743 Shewanella halifaxensis HAW-EB4 cysteine synthase A YP_001675942.1 4541765 R 458817 CDS YP_001675943.1 167625649 5906210 complement(4543018..4544178) 1 NC_010334.1 PFAM: aminotransferase class I and II; KEGG: pcr:Pcryo_0738 aminotransferase, class I and II; class I/II aminotransferase 4544178 5906210 Shal_3744 Shewanella halifaxensis HAW-EB4 class I/II aminotransferase YP_001675943.1 4543018 R 458817 CDS YP_001675944.1 167625650 5906211 complement(4544402..4546585) 1 NC_010334.1 PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; KEGG: son:SO_4085 chitinase A; glycoside hydrolase family protein 4546585 5906211 Shal_3745 Shewanella halifaxensis HAW-EB4 glycoside hydrolase family protein YP_001675944.1 4544402 R 458817 CDS YP_001675945.1 167625651 5906426 4547185..4547496 1 NC_010334.1 KEGG: vvy:VVA1355 hypothetical protein; hypothetical protein 4547496 5906426 Shal_3746 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675945.1 4547185 D 458817 CDS YP_001675946.1 167625652 5906427 4547493..4548524 1 NC_010334.1 KEGG: vvy:VVA1354 multidrug resistance efflux pump; multidrug resistance efflux pump 4548524 5906427 Shal_3747 Shewanella halifaxensis HAW-EB4 multidrug resistance efflux pump YP_001675946.1 4547493 D 458817 CDS YP_001675947.1 167625653 5906901 complement(4548606..4549283) 1 NC_010334.1 KEGG: shm:Shewmr7_0124 hypothetical protein; hypothetical protein 4549283 5906901 Shal_3748 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675947.1 4548606 R 458817 CDS YP_001675948.1 167625654 5906902 4550309..4550560 1 NC_010334.1 KEGG: sfr:Sfri_3640 hypothetical protein; hypothetical protein 4550560 5906902 Shal_3749 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675948.1 4550309 D 458817 CDS YP_001675949.1 167625655 5905888 4551209..4552579 1 NC_010334.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: bha:BH0608 hypothetical protein; xanthine/uracil/vitamin C permease 4552579 5905888 Shal_3750 Shewanella halifaxensis HAW-EB4 xanthine/uracil/vitamin C permease YP_001675949.1 4551209 D 458817 CDS YP_001675950.1 167625656 5905889 complement(4552647..4554179) 1 NC_010334.1 PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: aha:AHA_2651 inner membrane protein YoaE; integral membrane protein TerC 4554179 5905889 Shal_3751 Shewanella halifaxensis HAW-EB4 integral membrane protein TerC YP_001675950.1 4552647 R 458817 CDS YP_001675951.1 167625657 5905632 4554657..4555520 1 NC_010334.1 KEGG: slo:Shew_3216 hypothetical protein; hypothetical protein 4555520 5905632 Shal_3752 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675951.1 4554657 D 458817 CDS YP_001675952.1 167625658 5905633 complement(4555580..4556338) 1 NC_010334.1 KEGG: slo:Shew_0483 hypothetical protein; hypothetical protein 4556338 5905633 Shal_3753 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675952.1 4555580 R 458817 CDS YP_001675953.1 167625659 5905656 complement(4556341..4557555) 1 NC_010334.1 KEGG: slo:Shew_0482 hypothetical protein; hypothetical protein 4557555 5905656 Shal_3754 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675953.1 4556341 R 458817 CDS YP_001675954.1 167625660 5905657 complement(4557722..4560958) 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; SMART: extracellular solute-binding protein family 3; metal-dependent phosphohydrolase HD region; KEGG: slo:Shew_3366 metal dependent phosphohydrolase; metal dependent phosphohydrolase 4560958 5905657 Shal_3755 Shewanella halifaxensis HAW-EB4 metal dependent phosphohydrolase YP_001675954.1 4557722 R 458817 CDS YP_001675955.1 167625661 5905256 4561829..4562110 1 NC_010334.1 PFAM: protein of unknown function DUF1255; KEGG: pcr:Pcryo_0835 protein of unknown function DUF1255; hypothetical protein 4562110 5905256 Shal_3756 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675955.1 4561829 D 458817 CDS YP_001675956.1 167625662 5905257 complement(4562231..4562755) 1 NC_010334.1 KEGG: pha:PSHAa2221 hypothetical protein; hypothetical protein 4562755 5905257 Shal_3757 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675956.1 4562231 R 458817 CDS YP_001675957.1 167625663 5903410 complement(4562914..4563363) 1 NC_010334.1 KEGG: slo:Shew_0481 hypothetical protein; hypothetical protein 4563363 5903410 Shal_3758 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675957.1 4562914 R 458817 CDS YP_001675958.1 167625664 5903411 complement(4563472..4564128) 1 NC_010334.1 PFAM: pentapeptide repeat protein; KEGG: ppr:PBPRB0957 hypothetical protein; pentapeptide repeat-containing protein 4564128 5903411 Shal_3759 Shewanella halifaxensis HAW-EB4 pentapeptide repeat-containing protein YP_001675958.1 4563472 R 458817 CDS YP_001675959.1 167625665 5905191 complement(4564743..4565246) 1 NC_010334.1 PFAM: amino acid-binding ACT domain protein; KEGG: slo:Shew_2884 glycine cleavage system regulatory protein-like protein; amino acid-binding ACT domain-containing protein 4565246 5905191 Shal_3760 Shewanella halifaxensis HAW-EB4 amino acid-binding ACT domain-containing protein YP_001675959.1 4564743 R 458817 CDS YP_001675960.1 167625666 5905192 complement(4565509..4567212) 1 NC_010334.1 PFAM: BCCT transporter; KEGG: vha:VIBHAR_06536 hypothetical protein; BCCT transporter 4567212 5905192 Shal_3761 Shewanella halifaxensis HAW-EB4 BCCT transporter YP_001675960.1 4565509 R 458817 CDS YP_001675961.1 167625667 5904735 complement(4567558..4569165) 1 NC_010334.1 PFAM: Amidohydrolase 3; KEGG: ppr:PBPRB0017 hypothetical deacylase; N-acyl-D-aspartate deacylase 4569165 5904735 Shal_3762 Shewanella halifaxensis HAW-EB4 N-acyl-D-aspartate deacylase YP_001675961.1 4567558 R 458817 CDS YP_001675962.1 167625668 5904736 complement(4569289..4570584) 1 NC_010334.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: dde:Dde_3036 CBS; hypothetical protein 4570584 5904736 Shal_3763 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675962.1 4569289 R 458817 CDS YP_001675963.1 167625669 5904483 4571121..4571477 1 NC_010334.1 hypothetical protein 4571477 5904483 Shal_3764 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675963.1 4571121 D 458817 CDS YP_001675964.1 167625670 5904484 4572626..4574776 1 NC_010334.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: aha:AHA_0559 2',3'-cyclic-nucleotide 2'-phosphodiesterase; metallophosphoesterase 4574776 5904484 Shal_3765 Shewanella halifaxensis HAW-EB4 metallophosphoesterase YP_001675964.1 4572626 D 458817 CDS YP_001675965.1 167625671 5903194 complement(4575155..4576042) 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: syf:Synpcc7942_1811 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; diguanylate cyclase 4576042 5903194 Shal_3766 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001675965.1 4575155 R 458817 CDS YP_001675966.1 167625672 5903195 complement(4576841..4577755) 1 NC_010334.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: vfi:VF1108 chaperone protein DnaJ; chaperone DnaJ domain-containing protein 4577755 5903195 Shal_3767 Shewanella halifaxensis HAW-EB4 chaperone DnaJ domain-containing protein YP_001675966.1 4576841 R 458817 CDS YP_001675967.1 167625673 5904635 4578316..4578876 1 NC_010334.1 KEGG: mxa:MXAN_4378 hypothetical protein; hypothetical protein 4578876 5904635 Shal_3768 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675967.1 4578316 D 458817 CDS YP_001675968.1 167625674 5904636 complement(4579135..4580106) 1 NC_010334.1 PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein 4580106 5904636 Shal_3769 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675968.1 4579135 R 458817 CDS YP_001675969.1 167625675 5903565 4580182..4581525 1 NC_010334.1 PFAM: integrase family protein; KEGG: ecv:APECO1_1715 integrase; integrase family protein 4581525 5903565 Shal_3770 Shewanella halifaxensis HAW-EB4 integrase family protein YP_001675969.1 4580182 D 458817 CDS YP_001675970.1 167625676 5903566 4581734..4581928 1 NC_010334.1 KEGG: vco:VC0395_1060 hypothetical protein; hypothetical protein 4581928 5903566 Shal_3771 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675970.1 4581734 D 458817 CDS YP_001675971.1 167625677 5903554 4581944..4582426 1 NC_010334.1 KEGG: vco:VC0395_1061 hypothetical protein; hypothetical protein 4582426 5903554 Shal_3772 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675971.1 4581944 D 458817 CDS YP_001675972.1 167625678 5903555 4582600..4583157 1 NC_010334.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: ppd:Ppro_1125 resolvase, N-terminal domain; resolvase domain-containing protein 4583157 5903555 Shal_3773 Shewanella halifaxensis HAW-EB4 resolvase domain-containing protein YP_001675972.1 4582600 D 458817 CDS YP_001675973.1 167625679 5903480 4583150..4583971 1 NC_010334.1 hypothetical protein 4583971 5903480 Shal_3774 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675973.1 4583150 D 458817 CDS YP_001675974.1 167625680 5903481 complement(4584186..4584998) 1 NC_010334.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: gtn:GTNG_2076 hypothetical protein; HNH endonuclease 4584998 5903481 Shal_3775 Shewanella halifaxensis HAW-EB4 HNH endonuclease YP_001675974.1 4584186 R 458817 CDS YP_001675975.1 167625681 5903627 complement(4585136..4586779) 1 NC_010334.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 4586779 groEL 5903627 groEL Shewanella halifaxensis HAW-EB4 chaperonin GroEL YP_001675975.1 4585136 R 458817 CDS YP_001675976.1 167625682 5903628 complement(4586869..4587159) 1 NC_010334.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4587159 groES 5903628 groES Shewanella halifaxensis HAW-EB4 co-chaperonin GroES YP_001675976.1 4586869 R 458817 CDS YP_001675977.1 167625683 5903688 4587408..4588769 1 NC_010334.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: slo:Shew_0470 MATE efflux family protein; MATE efflux family protein 4588769 5903688 Shal_3778 Shewanella halifaxensis HAW-EB4 MATE efflux family protein YP_001675977.1 4587408 D 458817 CDS YP_001675978.1 167625684 5903689 4588825..4589481 1 NC_010334.1 PFAM: pentapeptide repeat protein; KEGG: slo:Shew_0469 pentapeptide repeat protein; pentapeptide repeat-containing protein 4589481 5903689 Shal_3779 Shewanella halifaxensis HAW-EB4 pentapeptide repeat-containing protein YP_001675978.1 4588825 D 458817 CDS YP_001675979.1 167625685 5903727 4589651..4590049 1 NC_010334.1 KEGG: slo:Shew_0465 hypothetical protein; hypothetical protein 4590049 5903727 Shal_3780 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675979.1 4589651 D 458817 CDS YP_001675980.1 167625686 5903728 complement(4590158..4591108) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_0468 transcriptional regulator, LysR family; LysR family transcriptional regulator 4591108 5903728 Shal_3781 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001675980.1 4590158 R 458817 CDS YP_001675981.1 167625687 5903764 4591303..4592385 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_0467 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 4592385 5903764 Shal_3782 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001675981.1 4591303 D 458817 CDS YP_001675982.1 167625688 5903765 4592501..4595578 1 NC_010334.1 PFAM: acriflavin resistance protein; KEGG: slo:Shew_0466 acriflavin resistance protein; acriflavin resistance protein 4595578 5903765 Shal_3783 Shewanella halifaxensis HAW-EB4 acriflavin resistance protein YP_001675982.1 4592501 D 458817 CDS YP_001675983.1 167625689 5903766 4595807..4596202 1 NC_010334.1 KEGG: slo:Shew_0464 hypothetical protein; hypothetical protein 4596202 5903766 Shal_3784 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675983.1 4595807 D 458817 CDS YP_001675984.1 167625690 5903767 4596262..4596618 1 NC_010334.1 KEGG: slo:Shew_0463 hypothetical protein; hypothetical protein 4596618 5903767 Shal_3785 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675984.1 4596262 D 458817 CDS YP_001675985.1 167625691 5903816 complement(4596776..4597102) 1 NC_010334.1 KEGG: slo:Shew_0462 hypothetical protein; hypothetical protein 4597102 5903816 Shal_3786 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675985.1 4596776 R 458817 CDS YP_001675986.1 167625692 5903817 complement(4597228..4597698) 1 NC_010334.1 KEGG: slo:Shew_3539 hypothetical protein; hypothetical protein 4597698 5903817 Shal_3787 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675986.1 4597228 R 458817 CDS YP_001675987.1 167625693 5903862 complement(4597848..4600253) 1 NC_010334.1 KEGG: slo:Shew_0460 hypothetical protein; hypothetical protein 4600253 5903862 Shal_3788 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675987.1 4597848 R 458817 CDS YP_001675988.1 167625694 5903863 complement(4600440..4604051) 1 NC_010334.1 KEGG: slo:Shew_0459 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing hybrid histidine kinase 4604051 5903863 Shal_3789 Shewanella halifaxensis HAW-EB4 PAS/PAC sensor-containing hybrid histidine kinase YP_001675988.1 4600440 R 458817 CDS YP_001675989.1 167625695 5903990 complement(4604328..4605722) 1 NC_010334.1 PFAM: PhoH family protein; SMART: AAA ATPase; Nucleotide binding protein PINc; KEGG: slo:Shew_0458 PhoH family protein; PhoH family protein 4605722 5903990 Shal_3790 Shewanella halifaxensis HAW-EB4 PhoH family protein YP_001675989.1 4604328 R 458817 CDS YP_001675990.1 167625696 5903991 4606064..4608970 1 NC_010334.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 4608970 5903991 Shal_3791 Shewanella halifaxensis HAW-EB4 ATP-dependent helicase HepA YP_001675990.1 4606064 D 458817 CDS YP_001675991.1 167625697 5904182 4609086..4609973 1 NC_010334.1 KEGG: slo:Shew_0456 hypothetical protein; hypothetical protein 4609973 5904182 Shal_3792 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675991.1 4609086 D 458817 CDS YP_001675992.1 167625698 5904183 complement(4610059..4610550) 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: slo:Shew_0455 uncharacterized protein UPF0114; hypothetical protein 4610550 5904183 Shal_3793 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675992.1 4610059 R 458817 CDS YP_001675993.1 167625699 5904178 complement(4610725..4611531) 1 NC_010334.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4611531 5904178 Shal_3794 Shewanella halifaxensis HAW-EB4 enoyl-CoA hydratase YP_001675993.1 4610725 R 458817 CDS YP_001675994.1 167625700 5904179 4611911..4612906 1 NC_010334.1 PFAM: response regulator receiver; KEGG: slo:Shew_0453 response regulator receiver protein; MCP methylation inhibitor CheC 4612906 5904179 Shal_3795 Shewanella halifaxensis HAW-EB4 MCP methylation inhibitor CheC YP_001675994.1 4611911 D 458817 CDS YP_001675995.1 167625701 5904126 4612908..4613891 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_0452 diguanylate cyclase; diguanylate cyclase 4613891 5904126 Shal_3796 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001675995.1 4612908 D 458817 CDS YP_001675996.1 167625702 5904127 complement(4613969..4614379) 1 NC_010334.1 PFAM: protein of unknown function DUF1260; KEGG: sfr:Sfri_3513 protein of unknown function DUF1260; hypothetical protein 4614379 5904127 Shal_3797 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001675996.1 4613969 R 458817 CDS YP_001675997.1 167625703 5904124 complement(4614409..4615137) 1 NC_010334.1 KEGG: slo:Shew_0450 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 4615137 5904124 Shal_3798 Shewanella halifaxensis HAW-EB4 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001675997.1 4614409 R 458817 CDS YP_001675998.1 167625704 5904125 complement(4615379..4616164) 1 NC_010334.1 PFAM: ABC-3 protein; KEGG: sbm:Shew185_3797 ABC-3 protein; ABC-3 protein 4616164 5904125 Shal_3799 Shewanella halifaxensis HAW-EB4 ABC-3 protein YP_001675998.1 4615379 R 458817 CDS YP_001675999.1 167625705 5904101 complement(4616291..4617217) 1 NC_010334.1 PFAM: periplasmic solute binding protein; KEGG: shm:Shewmr7_3463 periplasmic solute binding protein; periplasmic solute-binding protein 4617217 5904101 Shal_3800 Shewanella halifaxensis HAW-EB4 periplasmic solute-binding protein YP_001675999.1 4616291 R 458817 CDS YP_001676000.1 167625706 5904102 complement(4617201..4618388) 1 NC_010334.1 KEGG: slo:Shew_0447 hypothetical protein; hypothetical protein 4618388 5904102 Shal_3801 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676000.1 4617201 R 458817 CDS YP_001676001.1 167625707 5904069 complement(4618466..4618747) 1 NC_010334.1 KEGG: shn:Shewana3_0564 hypothetical protein; hypothetical protein 4618747 5904069 Shal_3802 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676001.1 4618466 R 458817 CDS YP_001676002.1 167625708 5904070 4618978..4619103 1 NC_010334.1 hypothetical protein 4619103 5904070 Shal_3803 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676002.1 4618978 D 458817 CDS YP_001676003.1 167625709 5904060 complement(4619257..4619592) 1 NC_010334.1 KEGG: slo:Shew_0445 hypothetical protein; hypothetical protein 4619592 5904060 Shal_3804 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676003.1 4619257 R 458817 CDS YP_001676004.1 167625710 5904061 4619772..4621394 1 NC_010334.1 PFAM: MscS Mechanosensitive ion channel; KEGG: slo:Shew_0444 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4621394 5904061 Shal_3805 Shewanella halifaxensis HAW-EB4 mechanosensitive ion channel protein MscS YP_001676004.1 4619772 D 458817 CDS YP_001676005.1 167625711 5904001 complement(4621473..4623185) 1 NC_010334.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 4623185 5904001 Shal_3806 Shewanella halifaxensis HAW-EB4 formate--tetrahydrofolate ligase YP_001676005.1 4621473 R 458817 CDS YP_001676006.1 167625712 5904002 complement(4623444..4624310) 1 NC_010334.1 PFAM: MaoC domain protein dehydratase; KEGG: shn:Shewana3_0558 MaoC domain protein dehydratase; dehydratase 4624310 5904002 Shal_3807 Shewanella halifaxensis HAW-EB4 dehydratase YP_001676006.1 4623444 R 458817 CDS YP_001676007.1 167625713 5903999 complement(4624419..4625303) 1 NC_010334.1 PFAM: GumN family protein; KEGG: slo:Shew_0438 GumN family protein; GumN family protein 4625303 5903999 Shal_3808 Shewanella halifaxensis HAW-EB4 GumN family protein YP_001676007.1 4624419 R 458817 CDS YP_001676008.1 167625714 5904000 4625349..4625660 1 NC_010334.1 KEGG: slo:Shew_0437 hypothetical protein; hypothetical protein 4625660 5904000 Shal_3809 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676008.1 4625349 D 458817 CDS YP_001676009.1 167625715 5903982 complement(4625788..4626312) 1 NC_010334.1 KEGG: sbm:Shew185_3811 hypothetical protein; hypothetical protein 4626312 5903982 Shal_3810 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676009.1 4625788 R 458817 CDS YP_001676010.1 167625716 5903983 4626622..4626927 1 NC_010334.1 KEGG: slo:Shew_0434 hypothetical protein; hypothetical protein 4626927 5903983 Shal_3811 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676010.1 4626622 D 458817 CDS YP_001676011.1 167625717 5903820 4627323..4627631 1 NC_010334.1 KEGG: slo:Shew_0433 hypothetical protein; hypothetical protein 4627631 5903820 Shal_3812 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676011.1 4627323 D 458817 CDS YP_001676012.1 167625718 5903821 complement(4627745..4628254) 1 NC_010334.1 KEGG: sbm:Shew185_3814 hypothetical protein; hypothetical protein 4628254 5903821 Shal_3813 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676012.1 4627745 R 458817 CDS YP_001676013.1 167625719 5903629 4628435..4628830 1 NC_010334.1 KEGG: slo:Shew_0431 hypothetical protein; hypothetical protein 4628830 5903629 Shal_3814 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676013.1 4628435 D 458817 CDS YP_001676014.1 167625720 5903630 4628827..4628964 1 NC_010334.1 KEGG: shm:Shewmr7_3481 response regulator receiver protein; response regulator receiver protein 4628964 5903630 Shal_3815 Shewanella halifaxensis HAW-EB4 response regulator receiver protein YP_001676014.1 4628827 D 458817 CDS YP_001676015.1 167625721 5903662 4629195..4629467 1 NC_010334.1 PFAM: histone family protein DNA-binding protein; KEGG: slo:Shew_0430 histone family protein DNA-binding protein; histone family protein DNA-binding protein 4629467 5903662 Shal_3816 Shewanella halifaxensis HAW-EB4 histone family protein DNA-binding protein YP_001676015.1 4629195 D 458817 CDS YP_001676016.1 167625722 5903663 4629721..4630413 1 NC_010334.1 PFAM: conserved hypothetical protein; KEGG: slo:Shew_0429 hypothetical protein; hypothetical protein 4630413 5903663 Shal_3817 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676016.1 4629721 D 458817 CDS YP_001676017.1 167625723 5903674 4630784..4630924 1 NC_010334.1 KEGG: shm:Shewmr7_3488 hypothetical protein; hypothetical protein 4630924 5903674 Shal_3818 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676017.1 4630784 D 458817 CDS YP_001676018.1 167625724 5903675 complement(4631003..4632382) 1 NC_010334.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: slo:Shew_0424 amino acid carrier protein; amino acid carrier protein 4632382 5903675 Shal_3819 Shewanella halifaxensis HAW-EB4 amino acid carrier protein YP_001676018.1 4631003 R 458817 CDS YP_001676019.1 167625725 5903686 complement(4632964..4634178) 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_0420 major facilitator superfamily MFS_1; major facilitator transporter 4634178 5903686 Shal_3820 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001676019.1 4632964 R 458817 CDS YP_001676020.1 167625726 5903687 complement(4634411..4635430) 1 NC_010334.1 KEGG: shn:Shewana3_2330 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 4635430 5903687 Shal_3821 Shewanella halifaxensis HAW-EB4 glyceraldehyde-3-phosphate dehydrogenase YP_001676020.1 4634411 R 458817 CDS YP_001676021.1 167625727 5903690 complement(4635583..4636626) 1 NC_010334.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: son:SO_0534 arsenical pump membrane protein, putative; arsenical-resistance protein 4636626 5903690 Shal_3822 Shewanella halifaxensis HAW-EB4 arsenical-resistance protein YP_001676021.1 4635583 R 458817 CDS YP_001676022.1 167625728 5903691 complement(4636685..4637071) 1 NC_010334.1 PFAM: regulatory protein ArsR; KEGG: shm:Shewmr7_3499 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 4637071 5903691 Shal_3823 Shewanella halifaxensis HAW-EB4 ArsR family transcriptional regulator YP_001676022.1 4636685 R 458817 CDS YP_001676023.1 167625729 5903707 4637229..4638482 1 NC_010334.1 KEGG: azo:azo0052 hypothetical secreted protein; hypothetical protein 4638482 5903707 Shal_3824 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676023.1 4637229 D 458817 CDS YP_001676024.1 167625730 5903708 complement(4638633..4640015) 1 NC_010334.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: sbm:Shew185_0512 peptidase U62 modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 4640015 5903708 Shal_3825 Shewanella halifaxensis HAW-EB4 peptidase U62 modulator of DNA gyrase YP_001676024.1 4638633 R 458817 CDS YP_001676025.1 167625731 5903719 4640202..4640744 1 NC_010334.1 PFAM: protein of unknown function DUF615; KEGG: slo:Shew_0415 protein of unknown function DUF615; hypothetical protein 4640744 5903719 Shal_3826 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676025.1 4640202 D 458817 CDS YP_001676026.1 167625732 5903720 4640933..4643449 1 NC_010334.1 PFAM: Ig domain protein group 1 domain protein; KEGG: sbl:Sbal_3807 Ig domain protein, group 1 domain protein; Ig domain-containing protein 4643449 5903720 Shal_3827 Shewanella halifaxensis HAW-EB4 Ig domain-containing protein YP_001676026.1 4640933 D 458817 CDS YP_001676027.1 167625733 5903739 complement(4643713..4644849) 1 NC_010334.1 PFAM: ABC-2 type transporter; KEGG: sbm:Shew185_0508 ABC-2 type transporter; ABC-2 type transporter 4644849 5903739 Shal_3828 Shewanella halifaxensis HAW-EB4 ABC-2 type transporter YP_001676027.1 4643713 R 458817 CDS YP_001676028.1 167625734 5903740 complement(4644851..4646014) 1 NC_010334.1 PFAM: ABC-2 type transporter; KEGG: she:Shewmr4_3462 ABC-2 type transporter; ABC-2 type transporter 4646014 5903740 Shal_3829 Shewanella halifaxensis HAW-EB4 ABC-2 type transporter YP_001676028.1 4644851 R 458817 CDS YP_001676029.1 167625735 5903751 complement(4646045..4647016) 1 NC_010334.1 PFAM: secretion protein HlyD family protein; KEGG: shn:Shewana3_3639 secretion protein HlyD family protein; secretion protein HlyD family protein 4647016 5903751 Shal_3830 Shewanella halifaxensis HAW-EB4 secretion protein HlyD family protein YP_001676029.1 4646045 R 458817 CDS YP_001676030.1 167625736 5903752 complement(4647006..4648397) 1 NC_010334.1 PFAM: outer membrane efflux protein; KEGG: slo:Shew_0411 outer membrane efflux protein; outer membrane efflux protein 4648397 5903752 Shal_3831 Shewanella halifaxensis HAW-EB4 outer membrane efflux protein YP_001676030.1 4647006 R 458817 CDS YP_001676031.1 167625737 5903755 complement(4648521..4649969) 1 NC_010334.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: she:Shewmr4_3465 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 4649969 5903755 Shal_3832 Shewanella halifaxensis HAW-EB4 peptidase U62 modulator of DNA gyrase YP_001676031.1 4648521 R 458817 CDS YP_001676032.1 167625738 5903756 complement(4650059..4650889) 1 NC_010334.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sbl:Sbal_3816 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4650889 5903756 Shal_3833 Shewanella halifaxensis HAW-EB4 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001676032.1 4650059 R 458817 CDS YP_001676033.1 167625739 5903761 complement(4650813..4655069) 1 NC_010334.1 KEGG: slo:Shew_0408 hypothetical protein; hypothetical protein 4655069 5903761 Shal_3834 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676033.1 4650813 R 458817 CDS YP_001676034.1 167625740 5903762 complement(4655069..4656577) 1 NC_010334.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 4656577 5903762 Shal_3835 Shewanella halifaxensis HAW-EB4 ribonuclease G YP_001676034.1 4655069 R 458817 CDS YP_001676035.1 167625741 5903768 complement(4656737..4657345) 1 NC_010334.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: slo:Shew_0406 maf protein; maf protein 4657345 5903768 Shal_3836 Shewanella halifaxensis HAW-EB4 maf protein YP_001676035.1 4656737 R 458817 CDS YP_001676036.1 167625742 5903769 complement(4657434..4657922) 1 NC_010334.1 PFAM: Rod shape-determining protein MreD; KEGG: slo:Shew_0405 rod shape-determining protein MreD; rod shape-determining protein MreD 4657922 5903769 Shal_3837 Shewanella halifaxensis HAW-EB4 rod shape-determining protein MreD YP_001676036.1 4657434 R 458817 CDS YP_001676037.1 167625743 5903770 complement(4657919..4658806) 1 NC_010334.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 4658806 5903770 Shal_3838 Shewanella halifaxensis HAW-EB4 rod shape-determining protein MreC YP_001676037.1 4657919 R 458817 CDS YP_001676038.1 167625744 5903771 complement(4658848..4659897) 1 NC_010334.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 4659897 5903771 Shal_3839 Shewanella halifaxensis HAW-EB4 rod shape-determining protein MreB YP_001676038.1 4658848 R 458817 CDS YP_001676039.1 167625745 5903772 complement(4660070..4664419) 1 NC_010334.1 SMART: PA14-related domain protein; KEGG: slo:Shew_0402 MSHA biogenesis protein MshQ; PA14 domain-containing protein 4664419 5903772 Shal_3840 Shewanella halifaxensis HAW-EB4 PA14 domain-containing protein YP_001676039.1 4660070 R 458817 CDS YP_001676040.1 167625746 5903773 complement(4664484..4665050) 1 NC_010334.1 KEGG: slo:Shew_0401 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP 4665050 5903773 Shal_3841 Shewanella halifaxensis HAW-EB4 MSHA biogenesis protein MshP YP_001676040.1 4664484 R 458817 CDS YP_001676041.1 167625747 5903802 complement(4665040..4665924) 1 NC_010334.1 KEGG: slo:Shew_0400 methylation site containing protein; methylation site containing protein 4665924 5903802 Shal_3842 Shewanella halifaxensis HAW-EB4 methylation site containing protein YP_001676041.1 4665040 R 458817 CDS YP_001676042.1 167625748 5903803 complement(4665924..4666499) 1 NC_010334.1 KEGG: spc:Sputcn32_0570 methylation site containing protein; methylation site containing protein 4666499 5903803 Shal_3843 Shewanella halifaxensis HAW-EB4 methylation site containing protein YP_001676042.1 4665924 R 458817 CDS YP_001676043.1 167625749 5903814 complement(4666486..4666974) 1 NC_010334.1 KEGG: saz:Sama_0462 MSHA pilin protein MshC; MSHA pilin protein MshC 4666974 5903814 Shal_3844 Shewanella halifaxensis HAW-EB4 MSHA pilin protein MshC YP_001676043.1 4666486 R 458817 CDS YP_001676044.1 167625750 5903815 complement(4667184..4667669) 1 NC_010334.1 KEGG: slo:Shew_0397 methylation site containing protein; methylation site containing protein 4667669 5903815 Shal_3845 Shewanella halifaxensis HAW-EB4 methylation site containing protein YP_001676044.1 4667184 R 458817 CDS YP_001676045.1 167625751 5903818 complement(4667690..4668205) 1 NC_010334.1 KEGG: son:SO_4105 MSHA pilin protein MshA; MSHA pilin protein MshA 4668205 5903818 Shal_3846 Shewanella halifaxensis HAW-EB4 MSHA pilin protein MshA YP_001676045.1 4667690 R 458817 CDS YP_001676046.1 167625752 5903819 complement(4668324..4668932) 1 NC_010334.1 KEGG: shn:Shewana3_3657 methylation site containing protein; methylation site containing protein 4668932 5903819 Shal_3847 Shewanella halifaxensis HAW-EB4 methylation site containing protein YP_001676046.1 4668324 R 458817 CDS YP_001676047.1 167625753 5903822 complement(4669012..4669452) 1 NC_010334.1 KEGG: slo:Shew_0394 hypothetical protein; hypothetical protein 4669452 5903822 Shal_3848 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676047.1 4669012 R 458817 CDS YP_001676048.1 167625754 5903823 complement(4669525..4670745) 1 NC_010334.1 PFAM: type II secretion system protein; KEGG: shw:Sputw3181_3608 type II secretion system protein; type II secretion system protein 4670745 5903823 Shal_3849 Shewanella halifaxensis HAW-EB4 type II secretion system protein YP_001676048.1 4669525 R 458817 CDS YP_001676049.1 167625755 5903824 complement(4670748..4672481) 1 NC_010334.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: sbm:Shew185_0487 type II secretion system protein E; type II secretion system protein E 4672481 5903824 Shal_3850 Shewanella halifaxensis HAW-EB4 type II secretion system protein E YP_001676049.1 4670748 R 458817 CDS YP_001676050.1 167625756 5903825 complement(4672481..4673773) 1 NC_010334.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: she:Shewmr4_3484 tetratricopeptide TPR_2 repeat protein; hypothetical protein 4673773 5903825 Shal_3851 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676050.1 4672481 R 458817 CDS YP_001676051.1 167625757 5903852 complement(4673770..4674678) 1 NC_010334.1 KEGG: she:Shewmr4_3485 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM 4674678 5903852 Shal_3852 Shewanella halifaxensis HAW-EB4 MSHA biogenesis protein MshM YP_001676051.1 4673770 R 458817 CDS YP_001676052.1 167625758 5903853 complement(4674681..4676354) 1 NC_010334.1 TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB short domain; KEGG: slo:Shew_0389 pilus (MSHA type) biogenesis protein MshL; pilus (MSHA type) biogenesis protein MshL 4676354 5903853 Shal_3853 Shewanella halifaxensis HAW-EB4 pilus (MSHA type) biogenesis protein MshL YP_001676052.1 4674681 R 458817 CDS YP_001676053.1 167625759 5903884 complement(4676360..4676695) 1 NC_010334.1 KEGG: shw:Sputw3181_3613 MSHA biogenesis protein MshK; MSHA biogenesis protein MshK 4676695 5903884 Shal_3854 Shewanella halifaxensis HAW-EB4 MSHA biogenesis protein MshK YP_001676053.1 4676360 R 458817 CDS YP_001676054.1 167625760 5903885 complement(4676676..4677332) 1 NC_010334.1 KEGG: slo:Shew_0387 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ 4677332 5903885 Shal_3855 Shewanella halifaxensis HAW-EB4 MSHA biogenesis protein MshJ YP_001676054.1 4676676 R 458817 CDS YP_001676055.1 167625761 5905990 complement(4677329..4677937) 1 NC_010334.1 KEGG: slo:Shew_0386 fimbrial assembly family protein; fimbrial assembly family protein 4677937 5905990 Shal_3856 Shewanella halifaxensis HAW-EB4 fimbrial assembly family protein YP_001676055.1 4677329 R 458817 CDS YP_001676056.1 167625762 5905991 complement(4677934..4678815) 1 NC_010334.1 KEGG: sbm:Shew185_0480 conserved hypothetical biogenesis protein MshI; biogenesis protein MshI 4678815 5905991 Shal_3857 Shewanella halifaxensis HAW-EB4 biogenesis protein MshI YP_001676056.1 4677934 R 458817 CDS YP_001676057.1 167625763 5905798 complement(4679031..4680938) 1 NC_010334.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 4680938 5905798 Shal_3858 Shewanella halifaxensis HAW-EB4 regulatory protein CsrD YP_001676057.1 4679031 R 458817 CDS YP_001676058.1 167625764 5905799 complement(4681120..4682370) 1 NC_010334.1 PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: slo:Shew_0383 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); malate dehydrogenase 4682370 5905799 Shal_3859 Shewanella halifaxensis HAW-EB4 malate dehydrogenase YP_001676058.1 4681120 R 458817 CDS YP_001676059.1 167625765 5905754 complement(4682575..4683348) 1 NC_010334.1 PFAM: nuclease (SNase domain protein); KEGG: slo:Shew_0382 nuclease (SNase domain protein); nuclease 4683348 5905754 Shal_3860 Shewanella halifaxensis HAW-EB4 nuclease YP_001676059.1 4682575 R 458817 CDS YP_001676060.1 167625766 5905755 complement(4683616..4683828) 1 NC_010334.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 4683828 rpmE 5905755 rpmE Shewanella halifaxensis HAW-EB4 50S ribosomal protein L31 YP_001676060.1 4683616 R 458817 CDS YP_001676061.1 167625767 5905611 complement(4684030..4684758) 1 NC_010334.1 KEGG: slo:Shew_0380 hypothetical protein; hypothetical protein 4684758 5905611 Shal_3862 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676061.1 4684030 R 458817 CDS YP_001676062.1 167625768 5905612 4685064..4687259 1 NC_010334.1 KEGG: slo:Shew_0379 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' 4687259 5905612 Shal_3863 Shewanella halifaxensis HAW-EB4 primosomal protein N' YP_001676062.1 4685064 D 458817 CDS YP_001676063.1 167625769 5905510 4687384..4689129 1 NC_010334.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 4689129 argS 5905510 argS Shewanella halifaxensis HAW-EB4 arginyl-tRNA synthetase YP_001676063.1 4687384 D 458817 CDS YP_001676064.1 167625770 5905511 4689140..4689715 1 NC_010334.1 PFAM: Sporulation domain protein; KEGG: slo:Shew_0377 sporulation domain protein; sporulation domain-containing protein 4689715 5905511 Shal_3865 Shewanella halifaxensis HAW-EB4 sporulation domain-containing protein YP_001676064.1 4689140 D 458817 CDS YP_001676065.1 167625771 5905219 4689865..4690389 1 NC_010334.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4690389 5905219 Shal_3866 Shewanella halifaxensis HAW-EB4 ATP-dependent protease peptidase subunit YP_001676065.1 4689865 D 458817 CDS YP_001676066.1 167625772 5905220 4690480..4691805 1 NC_010334.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4691805 hslU 5905220 hslU Shewanella halifaxensis HAW-EB4 ATP-dependent protease ATP-binding subunit HslU YP_001676066.1 4690480 D 458817 CDS YP_001676067.1 167625773 5903115 4691927..4692322 1 NC_010334.1 PFAM: protein of unknown function DUF971; KEGG: slo:Shew_0373 protein of unknown function DUF971; hypothetical protein 4692322 5903115 Shal_3868 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676067.1 4691927 D 458817 CDS YP_001676068.1 167625774 5903116 4692558..4693262 1 NC_010334.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4693262 5903116 Shal_3869 Shewanella halifaxensis HAW-EB4 purine nucleoside phosphorylase YP_001676068.1 4692558 D 458817 CDS YP_001676069.1 167625775 5903743 4693365..4694537 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_2502 major facilitator superfamily MFS_1; hypothetical protein 4694537 5903743 Shal_3870 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676069.1 4693365 D 458817 CDS YP_001676070.1 167625776 5903744 complement(4694594..4695265) 1 NC_010334.1 PFAM: cyclic nucleotide-binding; KEGG: shn:Shewana3_2501 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein 4695265 5903744 Shal_3871 Shewanella halifaxensis HAW-EB4 cyclic nucleotide-binding protein YP_001676070.1 4694594 R 458817 CDS YP_001676071.1 167625777 5904132 complement(4695347..4696069) 1 NC_010334.1 KEGG: hch:HCH_06317 GMP synthase - glutamine amidotransferase domain; GMP synthase 4696069 5904132 Shal_3872 Shewanella halifaxensis HAW-EB4 GMP synthase YP_001676071.1 4695347 R 458817 CDS YP_001676072.1 167625778 5904133 complement(4696141..4697310) 1 NC_010334.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: hch:HCH_06318 alcohol dehydrogenase, class IV; iron-containing alcohol dehydrogenase 4697310 5904133 Shal_3873 Shewanella halifaxensis HAW-EB4 iron-containing alcohol dehydrogenase YP_001676072.1 4696141 R 458817 CDS YP_001676073.1 167625779 5904083 complement(4697357..4698760) 1 NC_010334.1 PFAM: aldehyde dehydrogenase; KEGG: hch:HCH_06320 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase 4698760 5904083 Shal_3874 Shewanella halifaxensis HAW-EB4 aldehyde dehydrogenase YP_001676073.1 4697357 R 458817 CDS YP_001676074.1 167625780 5904084 complement(4698815..4700182) 1 NC_010334.1 PFAM: glutamine synthetase catalytic region; KEGG: ppr:PBPRB0862 hypothetical protein; glutamine synthetase 4700182 5904084 Shal_3875 Shewanella halifaxensis HAW-EB4 glutamine synthetase YP_001676074.1 4698815 R 458817 CDS YP_001676075.1 167625781 5904011 complement(4700598..4700849) 1 NC_010334.1 KEGG: slo:Shew_3369 hypothetical protein; hypothetical protein 4700849 5904011 Shal_3876 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676075.1 4700598 R 458817 CDS YP_001676076.1 167625782 5904012 4701186..4701671 1 NC_010334.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4701671 5904012 Shal_3877 Shewanella halifaxensis HAW-EB4 ribonuclease activity regulator protein RraA YP_001676076.1 4701186 D 458817 CDS YP_001676077.1 167625783 5904130 4701814..4702848 1 NC_010334.1 PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: slo:Shew_3372 arginase/agmatinase/formiminoglutamase; arginase/agmatinase/formiminoglutamase 4702848 5904130 Shal_3878 Shewanella halifaxensis HAW-EB4 arginase/agmatinase/formiminoglutamase YP_001676077.1 4701814 D 458817 CDS YP_001676078.1 167625784 5904131 4703053..4703808 1 NC_010334.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_3373 ubiquinone/menaquinone biosynthesis methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 4703808 5904131 Shal_3879 Shewanella halifaxensis HAW-EB4 ubiquinone/menaquinone biosynthesis methyltransferase YP_001676078.1 4703053 D 458817 CDS YP_001676079.1 167625785 5903930 4703820..4704443 1 NC_010334.1 PFAM: Sterol-binding domain protein; KEGG: slo:Shew_3374 protein of unknown function DUF1243; sterol-binding domain-containing protein 4704443 5903930 Shal_3880 Shewanella halifaxensis HAW-EB4 sterol-binding domain-containing protein YP_001676079.1 4703820 D 458817 CDS YP_001676080.1 167625786 5903931 4704440..4706089 1 NC_010334.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: slo:Shew_3375 2-polyprenylphenol 6-hydroxylase; 2-polyprenylphenol 6-hydroxylase 4706089 5903931 Shal_3881 Shewanella halifaxensis HAW-EB4 2-polyprenylphenol 6-hydroxylase YP_001676080.1 4704440 D 458817 CDS YP_001676081.1 167625787 5903995 4706150..4706437 1 NC_010334.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: son:SO_4202 Sec-independent protein translocase protein TatA; twin arginine-targeting protein translocase 4706437 5903995 Shal_3882 Shewanella halifaxensis HAW-EB4 twin arginine-targeting protein translocase YP_001676081.1 4706150 D 458817 CDS YP_001676082.1 167625788 5903996 4706444..4706839 1 NC_010334.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: slo:Shew_3377 twin-arginine translocation protein, TatB subunit; twin-arginine translocation protein subunit TatB 4706839 5903996 Shal_3883 Shewanella halifaxensis HAW-EB4 twin-arginine translocation protein subunit TatB YP_001676082.1 4706444 D 458817 CDS YP_001676083.1 167625789 5903948 4706843..4707610 1 NC_010334.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: slo:Shew_3378 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 4707610 5903948 Shal_3884 Shewanella halifaxensis HAW-EB4 Sec-independent protein translocase subunit TatC YP_001676083.1 4706843 D 458817 CDS YP_001676084.1 167625790 5903949 4707784..4708290 1 NC_010334.1 KEGG: shn:Shewana3_3731 hypothetical protein; hypothetical protein 4708290 5903949 Shal_3885 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676084.1 4707784 D 458817 CDS YP_001676085.1 167625791 5903830 4708290..4709084 1 NC_010334.1 PFAM: TatD-related deoxyribonuclease; KEGG: shw:Sputw3181_3671 TatD-related deoxyribonuclease; TatD-like deoxyribonuclease 4709084 5903830 Shal_3886 Shewanella halifaxensis HAW-EB4 TatD-like deoxyribonuclease YP_001676085.1 4708290 D 458817 CDS YP_001676086.1 167625792 5903831 4709084..4710955 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: slo:Shew_3381 diguanylate cyclase; diguanylate cyclase 4710955 5903831 Shal_3887 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001676086.1 4709084 D 458817 CDS YP_001676087.1 167625793 5905738 4710980..4711990 1 NC_010334.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 4711990 5905738 Shal_3888 Shewanella halifaxensis HAW-EB4 delta-aminolevulinic acid dehydratase YP_001676087.1 4710980 D 458817 CDS YP_001676088.1 167625794 5905844 4719604..4720137 1 NC_010334.1 KEGG: shw:Sputw3181_0509 hypothetical protein; hypothetical protein 4720137 5905844 Shal_3889 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676088.1 4719604 D 458817 CDS YP_001676089.1 167625795 5903365 complement(4720211..4723192) 1 NC_010334.1 PFAM: TonB-dependent receptor; Cna B domain protein; TonB-dependent receptor plug; KEGG: saz:Sama_3213 putative oar protein; TonB-dependent receptor 4723192 5903365 Shal_3890 Shewanella halifaxensis HAW-EB4 TonB-dependent receptor YP_001676089.1 4720211 R 458817 CDS YP_001676090.1 167625796 5903366 complement(4723639..4724550) 1 NC_010334.1 PFAM: Ppx/GppA phosphatase; KEGG: sbm:Shew185_3950 Ppx/GppA phosphatase; Ppx/GppA phosphatase 4724550 5903366 Shal_3891 Shewanella halifaxensis HAW-EB4 Ppx/GppA phosphatase YP_001676090.1 4723639 R 458817 CDS YP_001676091.1 167625797 5905664 complement(4724564..4725874) 1 NC_010334.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 4725874 5905664 Shal_3892 Shewanella halifaxensis HAW-EB4 ATP-dependent RNA helicase RhlB YP_001676091.1 4724564 R 458817 CDS YP_001676092.1 167625798 5905665 4726279..4726605 1 NC_010334.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: shn:Shewana3_0409 thioredoxin; thioredoxin 4726605 5905665 Shal_3893 Shewanella halifaxensis HAW-EB4 thioredoxin YP_001676092.1 4726279 D 458817 CDS YP_001676093.1 167625799 5902886 4726845..4728110 1 NC_010334.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4728110 rho 5902886 rho Shewanella halifaxensis HAW-EB4 transcription termination factor Rho YP_001676093.1 4726845 D 458817 CDS YP_001676094.1 167625800 5902887 complement(4728211..4729125) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_0336 transcriptional regulator, LysR family; LysR family transcriptional regulator 4729125 5902887 Shal_3895 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001676094.1 4728211 R 458817 CDS YP_001676095.1 167625801 5903177 complement(4729259..4730002) 1 NC_010334.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 4730002 frdB 5903177 frdB Shewanella halifaxensis HAW-EB4 fumarate reductase iron-sulfur subunit YP_001676095.1 4729259 R 458817 CDS YP_001676096.1 167625802 5903178 complement(4729999..4731999) 1 NC_010334.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 4731999 5903178 Shal_3897 Shewanella halifaxensis HAW-EB4 fumarate reductase flavoprotein subunit YP_001676096.1 4729999 R 458817 CDS YP_001676097.1 167625803 5904858 complement(4732056..4732730) 1 NC_010334.1 PFAM: fumarate reductase respiratory complex transmembrane subunit; KEGG: sbm:Shew185_3961 fumarate reductase respiratory complex transmembrane subunit; fumarate reductase respiratory complex transmembrane subunit 4732730 5904858 Shal_3898 Shewanella halifaxensis HAW-EB4 fumarate reductase respiratory complex transmembrane subunit YP_001676097.1 4732056 R 458817 CDS YP_001676098.1 167625804 5904859 complement(4732890..4733594) 1 NC_010334.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 4733594 5904859 Shal_3899 Shewanella halifaxensis HAW-EB4 fumarate reductase cytochrome b-556 subunit YP_001676098.1 4732890 R 458817 CDS YP_001676099.1 167625805 5904345 4733960..4734841 1 NC_010334.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 4734841 prmA 5904345 prmA Shewanella halifaxensis HAW-EB4 50S ribosomal protein L11 methyltransferase YP_001676099.1 4733960 D 458817 CDS YP_001676100.1 167625806 5904346 4734993..4735961 1 NC_010334.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: slo:Shew_0330 putative TIM-barrel protein, nifR3 family; nifR3 family TIM-barrel protein 4735961 5904346 Shal_3901 Shewanella halifaxensis HAW-EB4 nifR3 family TIM-barrel protein YP_001676100.1 4734993 D 458817 CDS YP_001676101.1 167625807 5904470 4735979..4736284 1 NC_010334.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 4736284 fis 5904470 fis Shewanella halifaxensis HAW-EB4 DNA-binding protein Fis YP_001676101.1 4735979 D 458817 CDS YP_001676102.1 167625808 5904471 4736682..4738214 1 NC_010334.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: shm:Shewmr7_3221 leucyl aminopeptidase; leucyl aminopeptidase 4738214 5904471 Shal_3903 Shewanella halifaxensis HAW-EB4 leucyl aminopeptidase YP_001676102.1 4736682 D 458817 CDS YP_001676103.1 167625809 5903224 complement(4738355..4741522) 1 NC_010334.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cps:CPS_1959 putative RND efflux system protein; CzcA family heavy metal efflux protein 4741522 5903224 Shal_3904 Shewanella halifaxensis HAW-EB4 CzcA family heavy metal efflux protein YP_001676103.1 4738355 R 458817 CDS YP_001676104.1 167625810 5903225 complement(4741534..4742688) 1 NC_010334.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cps:CPS_1958 putative RND efflux system protein, MFP subunit; biotin/lipoyl attachment domain-containing protein 4742688 5903225 Shal_3905 Shewanella halifaxensis HAW-EB4 biotin/lipoyl attachment domain-containing protein YP_001676104.1 4741534 R 458817 CDS YP_001676105.1 167625811 5904662 complement(4742685..4744025) 1 NC_010334.1 PFAM: outer membrane efflux protein; KEGG: cps:CPS_1957 putative RND efflux system protein; outer membrane efflux protein 4744025 5904662 Shal_3906 Shewanella halifaxensis HAW-EB4 outer membrane efflux protein YP_001676105.1 4742685 R 458817 CDS YP_001676106.1 167625812 5904663 complement(4744149..4744559) 1 NC_010334.1 hypothetical protein 4744559 5904663 Shal_3907 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676106.1 4744149 R 458817 CDS YP_001676107.1 167625813 5906086 4744905..4745627 1 NC_010334.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sbm:Shew185_3967 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation-binding domain-containing protein 4745627 5906086 Shal_3908 Shewanella halifaxensis HAW-EB4 hemerythrin HHE cation-binding domain-containing protein YP_001676107.1 4744905 D 458817 CDS YP_001676108.1 167625814 5906087 complement(4745721..4746437) 1 NC_010334.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shn:Shewana3_0394 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 4746437 5906087 Shal_3909 Shewanella halifaxensis HAW-EB4 HAD family hydrolase YP_001676108.1 4745721 R 458817 CDS YP_001676109.1 167625815 5903035 complement(4746437..4747348) 1 NC_010334.1 TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sbl:Sbal_3993 tyrosine recombinase XerC; tyrosine recombinase XerC 4747348 5903035 Shal_3910 Shewanella halifaxensis HAW-EB4 tyrosine recombinase XerC YP_001676109.1 4746437 R 458817 CDS YP_001676110.1 167625816 5903036 complement(4747361..4747993) 1 NC_010334.1 PFAM: protein of unknown function DUF484; KEGG: slo:Shew_0324 protein of unknown function DUF484; hypothetical protein 4747993 5903036 Shal_3911 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676110.1 4747361 R 458817 CDS YP_001676111.1 167625817 5905912 complement(4747990..4748850) 1 NC_010334.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4748850 dapF 5905912 dapF Shewanella halifaxensis HAW-EB4 diaminopimelate epimerase YP_001676111.1 4747990 R 458817 CDS YP_001676112.1 167625818 5905913 complement(4748887..4750131) 1 NC_010334.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: slo:Shew_0322 diaminopimelate decarboxylase; diaminopimelate decarboxylase 4750131 5905913 Shal_3913 Shewanella halifaxensis HAW-EB4 diaminopimelate decarboxylase YP_001676112.1 4748887 R 458817 CDS YP_001676113.1 167625819 5904379 complement(4750137..4750313) 1 NC_010334.1 KEGG: sbl:Sbal_3997 hypothetical protein; hypothetical protein 4750313 5904379 Shal_3914 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676113.1 4750137 R 458817 CDS YP_001676114.1 167625820 5904380 4750725..4751054 1 NC_010334.1 PFAM: Frataxin family protein; KEGG: sbm:Shew185_3976 frataxin family protein; frataxin family protein 4751054 5904380 Shal_3915 Shewanella halifaxensis HAW-EB4 frataxin family protein YP_001676114.1 4750725 D 458817 CDS YP_001676115.1 167625821 5903008 complement(4751136..4753559) 1 NC_010334.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4753559 cyaA 5903008 cyaA Shewanella halifaxensis HAW-EB4 adenylate cyclase YP_001676115.1 4751136 R 458817 CDS YP_001676116.1 167625822 5903009 4753759..4754691 1 NC_010334.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4754691 hemC 5903009 hemC Shewanella halifaxensis HAW-EB4 porphobilinogen deaminase YP_001676116.1 4753759 D 458817 CDS YP_001676117.1 167625823 5902815 4754701..4755432 1 NC_010334.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: spc:Sputcn32_3588 uroporphyrinogen III synthase HEM4; uroporphyrinogen III synthase HEM4 4755432 5902815 Shal_3918 Shewanella halifaxensis HAW-EB4 uroporphyrinogen III synthase HEM4 YP_001676117.1 4754701 D 458817 CDS YP_001676118.1 167625824 5902816 4755498..4756682 1 NC_010334.1 PFAM: protein of unknown function DUF513 hemX; KEGG: slo:Shew_0316 protein of unknown function DUF513, HemX; hypothetical protein 4756682 5902816 Shal_3919 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676118.1 4755498 D 458817 CDS YP_001676119.1 167625825 5902793 4756682..4757851 1 NC_010334.1 PFAM: HemY domain protein; KEGG: slo:Shew_0315 HemY domain protein; HemY domain-containing protein 4757851 5902793 Shal_3920 Shewanella halifaxensis HAW-EB4 HemY domain-containing protein YP_001676119.1 4756682 D 458817 CDS YP_001676120.1 167625826 5902794 4758131..4764460 1 NC_010334.1 KEGG: slo:Shew_0314 putative outer membrane adhesin like proteiin; TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; SMART: Cadherin; putative outer membrane adhesin-like protein 4764460 5902794 Shal_3921 Shewanella halifaxensis HAW-EB4 putative outer membrane adhesin-like protein YP_001676120.1 4758131 D 458817 CDS YP_001676121.1 167625827 5902944 4764697..4776831 1 NC_010334.1 TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; Cadherin; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: shn:Shewana3_0382 putative outer membrane adhesin like proteiin; putative outer membrane adhesin-like protein 4776831 5902944 Shal_3922 Shewanella halifaxensis HAW-EB4 putative outer membrane adhesin-like protein YP_001676121.1 4764697 D 458817 CDS YP_001676122.1 167625828 5902945 4776944..4779121 1 NC_010334.1 KEGG: slo:Shew_0312 ABC transporter-related protein; TIGRFAM: ABC transporter transmembrane region type 1; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; ABC transporter transmembrane protein 4779121 5902945 Shal_3923 Shewanella halifaxensis HAW-EB4 ABC transporter transmembrane protein YP_001676122.1 4776944 D 458817 CDS YP_001676123.1 167625829 5903280 4779118..4780500 1 NC_010334.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_0311 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein 4780500 5903280 Shal_3924 Shewanella halifaxensis HAW-EB4 HlyD family type I secretion membrane fusion protein YP_001676123.1 4779118 D 458817 CDS YP_001676124.1 167625830 5903281 4780534..4781949 1 NC_010334.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: slo:Shew_0310 type I secretion outer membrane protein, TolC family; TolC family type I secretion outer membrane protein 4781949 5903281 Shal_3925 Shewanella halifaxensis HAW-EB4 TolC family type I secretion outer membrane protein YP_001676124.1 4780534 D 458817 CDS YP_001676125.1 167625831 5902787 4781946..4782551 1 NC_010334.1 PFAM: OmpA/MotB domain protein; KEGG: slo:Shew_0309 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 4782551 5902787 Shal_3926 Shewanella halifaxensis HAW-EB4 OmpA/MotB domain-containing protein YP_001676125.1 4781946 D 458817 CDS YP_001676126.1 167625832 5902788 4782570..4783277 1 NC_010334.1 KEGG: shn:Shewana3_0377 hypothetical protein; hypothetical protein 4783277 5902788 Shal_3927 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676126.1 4782570 D 458817 CDS YP_001676127.1 167625833 5902776 4783286..4785205 1 NC_010334.1 PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: slo:Shew_0307 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 4785205 5902776 Shal_3928 Shewanella halifaxensis HAW-EB4 diguanylate cyclase/phosphodiesterase YP_001676127.1 4783286 D 458817 CDS YP_001676128.1 167625834 5904385 4786102..4788831 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: slo:Shew_0306 diguanylate cyclase/phosphodiesterase with GAF sensor; GAF sensor-containing diguanylate cyclase/phosphodiesterase 4788831 5904385 Shal_3929 Shewanella halifaxensis HAW-EB4 GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001676128.1 4786102 D 458817 CDS YP_001676129.1 167625835 5904921 complement(4788862..4790877) 1 NC_010334.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: sbm:Shew185_3990 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep 4790877 5904921 Shal_3930 Shewanella halifaxensis HAW-EB4 ATP-dependent DNA helicase Rep YP_001676129.1 4788862 R 458817 CDS YP_001676130.1 167625836 5904922 4791071..4791703 1 NC_010334.1 PFAM: regulatory protein TetR; KEGG: son:SO_4326 transcriptional regulator, TetR family; TetR family transcriptional regulator 4791703 5904922 Shal_3931 Shewanella halifaxensis HAW-EB4 TetR family transcriptional regulator YP_001676130.1 4791071 D 458817 CDS YP_001676131.1 167625837 5905980 4791718..4792836 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shn:Shewana3_0372 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 4792836 5905980 Shal_3932 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001676131.1 4791718 D 458817 CDS YP_001676132.1 167625838 5905981 4792851..4795931 1 NC_010334.1 PFAM: acriflavin resistance protein; KEGG: shn:Shewana3_0371 acriflavin resistance protein; acriflavin resistance protein 4795931 5905981 Shal_3933 Shewanella halifaxensis HAW-EB4 acriflavin resistance protein YP_001676132.1 4792851 D 458817 CDS YP_001676133.1 167625839 5906074 4796100..4796354 1 NC_010334.1 PFAM: protein of unknown function DUF526; KEGG: slo:Shew_0304 protein of unknown function DUF526; hypothetical protein 4796354 5906074 Shal_3934 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676133.1 4796100 D 458817 CDS YP_001676134.1 167625840 5906075 4796588..4797388 1 NC_010334.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: slo:Shew_0302 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 4797388 5906075 Shal_3935 Shewanella halifaxensis HAW-EB4 PA-phosphatase-like phosphoesterase YP_001676134.1 4796588 D 458817 CDS YP_001676135.1 167625841 5906214 4797498..4797986 1 NC_010334.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: slo:Shew_0301 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4797986 5906214 Shal_3936 Shewanella halifaxensis HAW-EB4 AsnC family transcriptional regulator YP_001676135.1 4797498 D 458817 CDS YP_001676136.1 167625842 5906215 4798332..4799687 1 NC_010334.1 PFAM: sodium:neurotransmitter symporter; KEGG: slo:Shew_0300 sodium:neurotransmitter symporter; sodium:neurotransmitter symporter 4799687 5906215 Shal_3937 Shewanella halifaxensis HAW-EB4 sodium:neurotransmitter symporter YP_001676136.1 4798332 D 458817 CDS YP_001676137.1 167625843 5906309 4799874..4801859 1 NC_010334.1 TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shm:Shewmr7_3408 TonB-dependent copper receptor; TonB-dependent copper receptor 4801859 5906309 Shal_3938 Shewanella halifaxensis HAW-EB4 TonB-dependent copper receptor YP_001676137.1 4799874 D 458817 CDS YP_001676138.1 167625844 5906310 complement(4801943..4803079) 1 NC_010334.1 PFAM: aminotransferase class V; KEGG: shw:Sputw3181_3750 serine--pyruvate transaminase; serine--pyruvate transaminase 4803079 5906310 Shal_3939 Shewanella halifaxensis HAW-EB4 serine--pyruvate transaminase YP_001676138.1 4801943 R 458817 CDS YP_001676139.1 167625845 5906325 complement(4803346..4804899) 1 NC_010334.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4804899 5906325 Shal_3940 Shewanella halifaxensis HAW-EB4 threonine dehydratase YP_001676139.1 4803346 R 458817 CDS YP_001676140.1 167625846 5906326 complement(4804928..4806775) 1 NC_010334.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4806775 5906326 Shal_3941 Shewanella halifaxensis HAW-EB4 dihydroxy-acid dehydratase YP_001676140.1 4804928 R 458817 CDS YP_001676141.1 167625847 5905789 complement(4807350..4808279) 1 NC_010334.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4808279 5905789 Shal_3942 Shewanella halifaxensis HAW-EB4 branched-chain amino acid aminotransferase YP_001676141.1 4807350 R 458817 CDS YP_001676142.1 167625848 5905790 complement(4808284..4808550) 1 NC_010334.1 KEGG: shw:Sputw3181_3753 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 4808550 5905790 Shal_3943 Shewanella halifaxensis HAW-EB4 amino acid-binding ACT domain-containing protein YP_001676142.1 4808284 R 458817 CDS YP_001676143.1 167625849 5906387 complement(4808626..4810320) 1 NC_010334.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4810320 5906387 Shal_3944 Shewanella halifaxensis HAW-EB4 acetolactate synthase 2 catalytic subunit YP_001676143.1 4808626 R 458817 CDS YP_001676144.1 167625850 5906388 complement(4810862..4812343) 1 NC_010334.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 4812343 5906388 Shal_3945 Shewanella halifaxensis HAW-EB4 ketol-acid reductoisomerase YP_001676144.1 4810862 R 458817 CDS YP_001676145.1 167625851 5906445 4812527..4813399 1 NC_010334.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4813399 5906445 Shal_3946 Shewanella halifaxensis HAW-EB4 DNA-binding transcriptional regulator IlvY YP_001676145.1 4812527 D 458817 CDS YP_001676146.1 167625852 5906446 4813615..4814412 1 NC_010334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_0285 diguanylate cyclase; diguanylate cyclase 4814412 5906446 Shal_3947 Shewanella halifaxensis HAW-EB4 diguanylate cyclase YP_001676146.1 4813615 D 458817 CDS YP_001676147.1 167625853 5906638 complement(4814409..4815395) 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_1773 transcriptional regulator, LysR family; LysR family transcriptional regulator 4815395 5906638 Shal_3948 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001676147.1 4814409 R 458817 CDS YP_001676148.1 167625854 5906639 complement(4815876..4816724) 1 NC_010334.1 PFAM: regulatory protein LysR; KEGG: son:SO_3297 transcriptional regulator, LysR family; LysR family transcriptional regulator 4816724 5906639 Shal_3949 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001676148.1 4815876 R 458817 CDS YP_001676149.1 167625855 5906705 4816984..4818486 1 NC_010334.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: son:SO_3301 flavocytochrome c flavin subunit; flavocytochrome c 4818486 5906705 Shal_3950 Shewanella halifaxensis HAW-EB4 flavocytochrome c YP_001676149.1 4816984 D 458817 CDS YP_001676150.1 167625856 5906706 4818486..4818836 1 NC_010334.1 KEGG: son:SO_3300 cytochrome c; cytochrome c 4818836 5906706 Shal_3951 Shewanella halifaxensis HAW-EB4 cytochrome c YP_001676150.1 4818486 D 458817 CDS YP_001676151.1 167625857 5906789 4818867..4820519 1 NC_010334.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO_3299 Pal/histidase family protein; phenylalanine/histidine ammonia-lyase 4820519 5906789 Shal_3952 Shewanella halifaxensis HAW-EB4 phenylalanine/histidine ammonia-lyase YP_001676151.1 4818867 D 458817 CDS YP_001676152.1 167625858 5906790 complement(4820618..4822171) 1 NC_010334.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: vpa:VPA0596 putative methyl-accepting chemotaxis protein; Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer 4822171 5906790 Shal_3953 Shewanella halifaxensis HAW-EB4 Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer YP_001676152.1 4820618 R 458817 CDS YP_001676153.1 167625859 5906839 complement(4822468..4823655) 1 NC_010334.1 KEGG: vha:VIBHAR_05569 hypothetical protein; hypothetical protein 4823655 5906839 Shal_3954 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676153.1 4822468 R 458817 CDS YP_001676154.1 167625860 5906840 4823749..4824417 1 NC_010334.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: vha:VIBHAR_05570 hypothetical protein; two component transcriptional regulator 4824417 5906840 Shal_3955 Shewanella halifaxensis HAW-EB4 two component transcriptional regulator YP_001676154.1 4823749 D 458817 CDS YP_001676155.1 167625861 5906938 4824389..4825645 1 NC_010334.1 PFAM: histidine kinase A domain protein; KEGG: vha:VIBHAR_05571 hypothetical protein; histidine kinase 4825645 5906938 Shal_3956 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001676155.1 4824389 D 458817 CDS YP_001676156.1 167625862 5906939 4825989..4826825 1 NC_010334.1 hypothetical protein 4826825 5906939 Shal_3957 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676156.1 4825989 D 458817 CDS YP_001676157.1 167625863 5906966 4827395..4827610 1 NC_010334.1 KEGG: sbm:Shew185_1963 hypothetical protein; hypothetical protein 4827610 5906966 Shal_3958 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676157.1 4827395 D 458817 CDS YP_001676158.1 167625864 5906967 4827851..4829371 1 NC_010334.1 KEGG: sbl:Sbal_4042 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 4829371 5906967 Shal_3959 Shewanella halifaxensis HAW-EB4 Mg chelatase subunit ChlI YP_001676158.1 4827851 D 458817 CDS YP_001676159.1 167625865 5907043 4829821..4831350 1 NC_010334.1 PFAM: EAL domain protein; KEGG: swi:Swit_2925 EAL domain protein; diguanylate phosphodiesterase 4831350 5907043 Shal_3960 Shewanella halifaxensis HAW-EB4 diguanylate phosphodiesterase YP_001676159.1 4829821 D 458817 CDS YP_001676160.1 167625866 5907044 4831588..4832493 1 NC_010334.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: slo:Shew_0282 phospholipid/glycerol acyltransferase; putative acyltransferase 4832493 5907044 Shal_3961 Shewanella halifaxensis HAW-EB4 putative acyltransferase YP_001676160.1 4831588 D 458817 CDS YP_001676161.1 167625867 5902752 4832501..4833451 1 NC_010334.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: she:Shewmr4_3626 phospholipid/glycerol acyltransferase; putative acyltransferase 4833451 5902752 Shal_3962 Shewanella halifaxensis HAW-EB4 putative acyltransferase YP_001676161.1 4832501 D 458817 CDS YP_001676162.1 167625868 5902753 4833771..4834172 1 NC_010334.1 hypothetical protein 4834172 5902753 Shal_3963 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676162.1 4833771 D 458817 CDS YP_001676163.1 167625869 5902709 complement(4834257..4835348) 1 NC_010334.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4835348 5902709 Shal_3964 Shewanella halifaxensis HAW-EB4 branched-chain amino acid aminotransferase YP_001676163.1 4834257 R 458817 CDS YP_001676164.1 167625870 5902710 complement(4835529..4836320) 1 NC_010334.1 PFAM: regulatory protein TetR; KEGG: slo:Shew_0277 transcriptional regulator, TetR family; TetR family transcriptional regulator 4836320 5902710 Shal_3965 Shewanella halifaxensis HAW-EB4 TetR family transcriptional regulator YP_001676164.1 4835529 R 458817 CDS YP_001676165.1 167625871 5903242 4836665..4838176 1 NC_010334.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: slo:Shew_0276 flavocytochrome c; flavocytochrome c 4838176 5903242 Shal_3966 Shewanella halifaxensis HAW-EB4 flavocytochrome c YP_001676165.1 4836665 D 458817 CDS YP_001676166.1 167625872 5903243 4838188..4838556 1 NC_010334.1 KEGG: slo:Shew_0275 tetraheme cytochrome c, putative; tetraheme cytochrome c 4838556 5903243 Shal_3967 Shewanella halifaxensis HAW-EB4 tetraheme cytochrome c YP_001676166.1 4838188 D 458817 CDS YP_001676167.1 167625873 5906289 4838604..4839743 1 NC_010334.1 KEGG: slo:Shew_0274 hypothetical protein; hypothetical protein 4839743 5906289 Shal_3968 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676167.1 4838604 D 458817 CDS YP_001676168.1 167625874 5906290 4840016..4841089 1 NC_010334.1 KEGG: son:SO_1411 hypothetical protein; hypothetical protein 4841089 5906290 Shal_3969 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676168.1 4840016 D 458817 CDS YP_001676169.1 167625875 5906342 4841266..4842009 1 NC_010334.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: slo:Shew_0272 cupin 2, conserved barrel domain protein; cupin 4842009 5906342 Shal_3970 Shewanella halifaxensis HAW-EB4 cupin YP_001676169.1 4841266 D 458817 CDS YP_001676170.1 167625876 5906343 complement(4842084..4843334) 1 NC_010334.1 KEGG: vpa:VP1356 hypothetical protein; hypothetical protein 4843334 5906343 Shal_3971 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676170.1 4842084 R 458817 CDS YP_001676171.1 167625877 5903234 complement(4843331..4844632) 1 NC_010334.1 KEGG: vpa:VP1355 hypothetical protein; hypothetical protein 4844632 5903234 Shal_3972 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676171.1 4843331 R 458817 CDS YP_001676172.1 167625878 5903235 complement(4844629..4845537) 1 NC_010334.1 PFAM: alpha/beta hydrolase fold; KEGG: ppr:PBPRB0984 hypothetical protein; alpha/beta hydrolase fold protein 4845537 5903235 Shal_3973 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase fold protein YP_001676172.1 4844629 R 458817 CDS YP_001676173.1 167625879 5903214 complement(4845569..4846474) 1 NC_010334.1 TIGRFAM: virulence-related outer membrane protein; KEGG: vco:VC0395_A1347 hypothetical protein; virulence-like outer membrane protein 4846474 5903214 Shal_3974 Shewanella halifaxensis HAW-EB4 virulence-like outer membrane protein YP_001676173.1 4845569 R 458817 CDS YP_001676174.1 167625880 5903215 complement(4846732..4848114) 1 NC_010334.1 KEGG: slo:Shew_0271 phospholipase; phospholipase 4848114 5903215 Shal_3975 Shewanella halifaxensis HAW-EB4 phospholipase YP_001676174.1 4846732 R 458817 CDS YP_001676175.1 167625881 5903228 4848318..4848938 1 NC_010334.1 KEGG: slo:Shew_0270 hypothetical protein; hypothetical protein 4848938 5903228 Shal_3976 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676175.1 4848318 D 458817 CDS YP_001676176.1 167625882 5903229 complement(4849078..4850544) 1 NC_010334.1 PFAM: Na+/H+ antiporter NhaC; KEGG: sbm:Shew185_4032 Na+ antiporter NhaC; Na+/H+ antiporter NhaC 4850544 5903229 Shal_3977 Shewanella halifaxensis HAW-EB4 Na+/H+ antiporter NhaC YP_001676176.1 4849078 R 458817 CDS YP_001676177.1 167625883 5906503 4850725..4850928 1 NC_010334.1 PFAM: protein of unknown function DUF904; KEGG: slo:Shew_0267 protein of unknown function DUF904; hypothetical protein 4850928 5906503 Shal_3978 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676177.1 4850725 D 458817 CDS YP_001676178.1 167625884 5906504 complement(4851186..4851398) 1 NC_010334.1 PFAM: protein of unknown function DUF1107; KEGG: son:SO_0334 hypothetical protein; hypothetical protein 4851398 5906504 Shal_3979 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676178.1 4851186 R 458817 CDS YP_001676179.1 167625885 5906538 complement(4851605..4852216) 1 NC_010334.1 PFAM: DSBA oxidoreductase; KEGG: slo:Shew_0265 DsbA oxidoreductase; DSBA oxidoreductase 4852216 5906538 Shal_3980 Shewanella halifaxensis HAW-EB4 DSBA oxidoreductase YP_001676179.1 4851605 R 458817 CDS YP_001676180.1 167625886 5906539 complement(4852342..4853370) 1 NC_010334.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4853370 5906539 Shal_3981 Shewanella halifaxensis HAW-EB4 serine/threonine protein kinase YP_001676180.1 4852342 R 458817 CDS YP_001676181.1 167625887 5906756 complement(4853706..4854014) 1 NC_010334.1 KEGG: shn:Shewana3_3840 hypothetical protein; hypothetical protein 4854014 5906756 Shal_3982 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676181.1 4853706 R 458817 CDS YP_001676182.1 167625888 5906757 complement(4854064..4855515) 1 NC_010334.1 PFAM: protein of unknown function UPF0061; KEGG: she:Shewmr4_3645 protein of unknown function UPF0061; hypothetical protein 4855515 5906757 Shal_3983 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676182.1 4854064 R 458817 CDS YP_001676183.1 167625889 5905907 complement(4855517..4855807) 1 NC_010334.1 KEGG: she:Shewmr4_3646 hypothetical protein; hypothetical protein 4855807 5905907 Shal_3984 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676183.1 4855517 R 458817 CDS YP_001676184.1 167625890 5905908 complement(4855927..4856760) 1 NC_010334.1 KEGG: slo:Shew_0260 hypothetical protein; hypothetical protein 4856760 5905908 Shal_3985 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676184.1 4855927 R 458817 CDS YP_001676185.1 167625891 5905893 4857137..4857532 1 NC_010334.1 KEGG: slo:Shew_0259 hypothetical protein; hypothetical protein 4857532 5905893 Shal_3986 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676185.1 4857137 D 458817 CDS YP_001676186.1 167625892 5905894 4857749..4858951 1 NC_010334.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: vha:VIBHAR_05599 hypothetical protein; response regulator receiver modulated serine phosphatase 4858951 5905894 Shal_3987 Shewanella halifaxensis HAW-EB4 response regulator receiver modulated serine phosphatase YP_001676186.1 4857749 D 458817 CDS YP_001676187.1 167625893 5905962 4858965..4859297 1 NC_010334.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: kra:Krad_0483 anti-sigma-factor antagonist; anti-sigma-factor antagonist 4859297 5905962 Shal_3988 Shewanella halifaxensis HAW-EB4 anti-sigma-factor antagonist YP_001676187.1 4858965 D 458817 CDS YP_001676188.1 167625894 5905963 4859311..4860504 1 NC_010334.1 PFAM: Nucleotidyl transferase; KEGG: ava:Ava_3422 nucleotidyl transferase; nucleotidyl transferase 4860504 5905963 Shal_3989 Shewanella halifaxensis HAW-EB4 nucleotidyl transferase YP_001676188.1 4859311 D 458817 CDS YP_001676189.1 167625895 5905795 4860515..4860958 1 NC_010334.1 KEGG: vpa:VPA1048 putative anti-sigma F factor antagonist; putative anti-sigma regulatory factor 4860958 5905795 Shal_3990 Shewanella halifaxensis HAW-EB4 putative anti-sigma regulatory factor YP_001676189.1 4860515 D 458817 CDS YP_001676190.1 167625896 5905796 4861042..4862898 1 NC_010334.1 PFAM: glycosyl transferase family 2; KEGG: esa:ESA_01833 hypothetical protein; cellulose synthase 4862898 5905796 Shal_3991 Shewanella halifaxensis HAW-EB4 cellulose synthase YP_001676190.1 4861042 D 458817 CDS YP_001676191.1 167625897 5905609 4862885..4864210 1 NC_010334.1 KEGG: ava:Ava_1569 hypothetical protein; hypothetical protein 4864210 5905609 Shal_3992 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676191.1 4862885 D 458817 CDS YP_001676192.1 167625898 5905610 4864221..4865615 1 NC_010334.1 KEGG: esa:ESA_01831 hypothetical protein; hypothetical protein 4865615 5905610 Shal_3993 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676192.1 4864221 D 458817 CDS YP_001676193.1 167625899 5905549 4865639..4867021 1 NC_010334.1 KEGG: esa:ESA_01830 hypothetical protein; hypothetical protein 4867021 5905549 Shal_3994 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676193.1 4865639 D 458817 CDS YP_001676194.1 167625900 5905550 4867018..4867962 1 NC_010334.1 hypothetical protein 4867962 5905550 Shal_3995 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676194.1 4867018 D 458817 CDS YP_001676195.1 167625901 5905605 4868119..4869396 1 NC_010334.1 KEGG: ppd:Ppro_2693 glycosyl transferase, family 2; hypothetical protein 4869396 5905605 Shal_3996 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676195.1 4868119 D 458817 CDS YP_001676196.1 167625902 5905606 4869439..4869765 1 NC_010334.1 KEGG: vfi:VFA1013 hypothetical protein; hypothetical protein 4869765 5905606 Shal_3997 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676196.1 4869439 D 458817 CDS YP_001676197.1 167625903 5905615 4869785..4871239 1 NC_010334.1 KEGG: ana:alr3755 unknown protein; hypothetical protein 4871239 5905615 Shal_3998 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676197.1 4869785 D 458817 CDS YP_001676198.1 167625904 5905616 4871301..4872245 1 NC_010334.1 KEGG: esa:ESA_01836 hypothetical protein; hypothetical protein 4872245 5905616 Shal_3999 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676198.1 4871301 D 458817 CDS YP_001676199.1 167625905 5905640 complement(4872287..4872541) 1 NC_010334.1 hypothetical protein 4872541 5905640 Shal_4000 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676199.1 4872287 R 458817 CDS YP_001676200.1 167625906 5905641 complement(4872544..4873584) 1 NC_010334.1 KEGG: ppr:PBPRB1154 hypothetical protein; hypothetical protein 4873584 5905641 Shal_4001 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676200.1 4872544 R 458817 CDS YP_001676201.1 167625907 5904019 complement(4873587..4874078) 1 NC_010334.1 KEGG: ppr:PBPRB1153 hypothetical protein; hypothetical protein 4874078 5904019 Shal_4002 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676201.1 4873587 R 458817 CDS YP_001676202.1 167625908 5904020 4874181..4876838 1 NC_010334.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: vfi:VFA1016 sensory transduction protein kinase; histidine kinase 4876838 5904020 Shal_4003 Shewanella halifaxensis HAW-EB4 histidine kinase YP_001676202.1 4874181 D 458817 CDS YP_001676203.1 167625909 5902865 4877020..4877925 1 NC_010334.1 KEGG: slo:Shew_0258 hypothetical protein; hypothetical protein 4877925 5902865 Shal_4004 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676203.1 4877020 D 458817 CDS YP_001676204.1 167625910 5902866 4878087..4880144 1 NC_010334.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: slo:Shew_0257 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 4880144 5902866 Shal_4005 Shewanella halifaxensis HAW-EB4 peptidase S9 prolyl oligopeptidase YP_001676204.1 4878087 D 458817 CDS YP_001676205.1 167625911 5905467 4880305..4880871 1 NC_010334.1 KEGG: shn:Shewana3_3847 hypothetical protein; hypothetical protein 4880871 5905467 Shal_4006 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676205.1 4880305 D 458817 CDS YP_001676206.1 167625912 5905468 complement(4881033..4881617) 1 NC_010334.1 KEGG: slo:Shew_0246 hypothetical protein; hypothetical protein 4881617 5905468 Shal_4007 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676206.1 4881033 R 458817 CDS YP_001676207.1 167625913 5905395 complement(4881874..4884909) 1 NC_010334.1 PFAM: molydopterin dinucleotide-binding region; KEGG: slo:Shew_0245 molybdopterin dinucleotide-binding region; molydopterin dinucleotide-binding region 4884909 5905395 Shal_4008 Shewanella halifaxensis HAW-EB4 molydopterin dinucleotide-binding region YP_001676207.1 4881874 R 458817 CDS YP_001676208.1 167625914 5905396 complement(4884919..4885614) 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_0244 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4885614 5905396 Shal_4009 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001676208.1 4884919 R 458817 CDS YP_001676209.1 167625915 5905315 4886169..4887134 1 NC_010334.1 PFAM: regulatory protein LysR; KEGG: slo:Shew_0243 transcriptional regulator, LysR family; LysR family transcriptional regulator 4887134 5905315 Shal_4010 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001676209.1 4886169 D 458817 CDS YP_001676210.1 167625916 5905316 4887338..4889551 1 NC_010334.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: slo:Shew_0242 molybdopterin dinucleotide-binding region; molybdopterin oxidoreductase 4889551 5905316 Shal_4011 Shewanella halifaxensis HAW-EB4 molybdopterin oxidoreductase YP_001676210.1 4887338 D 458817 CDS YP_001676211.1 167625917 5905249 4889562..4890107 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_0241 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4890107 5905249 Shal_4012 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001676211.1 4889562 D 458817 CDS YP_001676212.1 167625918 5905250 4890107..4890697 1 NC_010334.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: slo:Shew_0240 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 4890697 5905250 Shal_4013 Shewanella halifaxensis HAW-EB4 cytoplasmic chaperone TorD family protein YP_001676212.1 4890107 D 458817 CDS YP_001676213.1 167625919 5905163 4890808..4891773 1 NC_010334.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: slo:Shew_0239 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 4891773 5905163 Shal_4014 Shewanella halifaxensis HAW-EB4 formate dehydrogenase subunit gamma YP_001676213.1 4890808 D 458817 CDS YP_001676214.1 167625920 5905164 4891926..4892990 1 NC_010334.1 PFAM: porin Gram-negative type; KEGG: slo:Shew_0238 porin, gram-negative type; porin 4892990 5905164 Shal_4015 Shewanella halifaxensis HAW-EB4 porin YP_001676214.1 4891926 D 458817 CDS YP_001676215.1 167625921 5905065 4893109..4895010 1 NC_010334.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: sbm:Shew185_2544 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4895010 5905065 Shal_4016 Shewanella halifaxensis HAW-EB4 methyl-accepting chemotaxis sensory transducer YP_001676215.1 4893109 D 458817 CDS YP_001676216.1 167625922 5905066 4895147..4896076 1 NC_010334.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: vpa:VP1745 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 4896076 5905066 Shal_4017 Shewanella halifaxensis HAW-EB4 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_001676216.1 4895147 D 458817 CDS YP_001676217.1 167625923 5904968 4896452..4897414 1 NC_010334.1 PFAM: regulatory protein LysR; KEGG: she:Shewmr4_3657 transcriptional regulator, LysR family; LysR family transcriptional regulator 4897414 5904968 Shal_4018 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001676217.1 4896452 D 458817 CDS YP_001676218.1 167625924 5904969 4897722..4899158 1 NC_010334.1 PFAM: Disulphide bond formation protein DsbB; KEGG: shm:Shewmr7_0287 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 4899158 5904969 Shal_4019 Shewanella halifaxensis HAW-EB4 disulfide bond formation protein DsbB YP_001676218.1 4897722 D 458817 CDS YP_001676219.1 167625925 5904946 4899253..4901454 1 NC_010334.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: she:Shewmr4_3659 twin-arginine translocation pathway signal; molybdopterin oxidoreductase 4901454 5904946 Shal_4020 Shewanella halifaxensis HAW-EB4 molybdopterin oxidoreductase YP_001676219.1 4899253 D 458817 CDS YP_001676220.1 167625926 5904947 4901467..4902015 1 NC_010334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: she:Shewmr4_3660 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4902015 5904947 Shal_4021 Shewanella halifaxensis HAW-EB4 4Fe-4S ferredoxin YP_001676220.1 4901467 D 458817 CDS YP_001676221.1 167625927 5902946 4902012..4902644 1 NC_010334.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: shm:Shewmr7_0284 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 4902644 5902946 Shal_4022 Shewanella halifaxensis HAW-EB4 cytoplasmic chaperone TorD family protein YP_001676221.1 4902012 D 458817 CDS YP_001676222.1 167625928 5902947 4902663..4903616 1 NC_010334.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: she:Shewmr4_3662 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 4903616 5902947 Shal_4023 Shewanella halifaxensis HAW-EB4 formate dehydrogenase subunit gamma YP_001676222.1 4902663 D 458817 CDS YP_001676223.1 167625929 5904913 4903724..4904818 1 NC_010334.1 KEGG: slo:Shew_0238 porin, gram-negative type; porin 4904818 5904913 Shal_4024 Shewanella halifaxensis HAW-EB4 porin YP_001676223.1 4903724 D 458817 CDS YP_001676224.1 167625930 5904914 complement(4904860..4905201) 1 NC_010334.1 PFAM: protein of unknown function DUF1232; KEGG: slo:Shew_0234 protein of unknown function DUF1232; hypothetical protein 4905201 5904914 Shal_4025 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676224.1 4904860 R 458817 CDS YP_001676225.1 167625931 5904911 complement(4905346..4907679) 1 NC_010334.1 PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: slo:Shew_0233 radical SAM N-terminal domain protein; hypothetical protein 4907679 5904911 Shal_4026 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676225.1 4905346 R 458817 CDS YP_001676226.1 167625932 5904912 complement(4907916..4908323) 1 NC_010334.1 KEGG: shn:Shewana3_3875 conserved hypothetical protein; hypothetical protein 4908323 5904912 Shal_4027 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676226.1 4907916 R 458817 CDS YP_001676227.1 167625933 5902760 4908547..4909767 1 NC_010334.1 PFAM: protein of unknown function DUF1212; KEGG: slo:Shew_0231 protein of unknown function DUF1212; hypothetical protein 4909767 5902760 Shal_4028 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676227.1 4908547 D 458817 CDS YP_001676228.1 167625934 5902761 4909937..4911583 1 NC_010334.1 KEGG: slo:Shew_0230 hypothetical protein; hypothetical protein 4911583 5902761 Shal_4029 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676228.1 4909937 D 458817 CDS YP_001676229.1 167625935 5903258 complement(4911709..4912128) 1 NC_010334.1 KEGG: pat:Patl_2820 hypothetical protein; hypothetical protein 4912128 5903258 Shal_4030 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676229.1 4911709 R 458817 CDS YP_001676230.1 167625936 5903259 complement(4912253..4912579) 1 NC_010334.1 PFAM: small multidrug resistance protein; KEGG: sfr:Sfri_3425 small multidrug resistance protein; small multidrug resistance protein 4912579 5903259 Shal_4031 Shewanella halifaxensis HAW-EB4 small multidrug resistance protein YP_001676230.1 4912253 R 458817 CDS YP_001676231.1 167625937 5902958 complement(4912818..4913657) 1 NC_010334.1 KEGG: sfr:Sfri_3426 carboxylesterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase 4913657 5902958 Shal_4032 Shewanella halifaxensis HAW-EB4 S-formylglutathione hydrolase YP_001676231.1 4912818 R 458817 CDS YP_001676232.1 167625938 5902959 complement(4913813..4914943) 1 NC_010334.1 TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO_A0161 zinc-binding dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase 4914943 5902959 Shal_4033 Shewanella halifaxensis HAW-EB4 S-(hydroxymethyl)glutathione dehydrogenase YP_001676232.1 4913813 R 458817 CDS YP_001676233.1 167625939 5902634 complement(4915181..4915447) 1 NC_010334.1 TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger DksA/TraR C4-type; KEGG: ilo:IL0756 DnaK suppressor protein; hypothetical protein 4915447 5902634 Shal_4034 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676233.1 4915181 R 458817 CDS YP_001676234.1 167625940 5902635 complement(4916057..4916653) 1 NC_010334.1 catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein 4916653 5902635 Shal_4035 Shewanella halifaxensis HAW-EB4 glutathione-dependent formaldehyde-activating protein YP_001676234.1 4916057 R 458817 CDS YP_001676235.1 167625941 5903226 complement(4916701..4917852) 1 NC_010334.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO_A0164 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 4917852 5903226 Shal_4036 Shewanella halifaxensis HAW-EB4 iron-containing alcohol dehydrogenase YP_001676235.1 4916701 R 458817 CDS YP_001676236.1 167625942 5903227 4918177..4919052 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfr:Sfri_3440 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 4919052 5903227 Shal_4037 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001676236.1 4918177 D 458817 CDS YP_001676237.1 167625943 5902727 4919336..4920544 1 NC_010334.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vfi:VF2364 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4920544 5902727 Shal_4038 Shewanella halifaxensis HAW-EB4 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001676237.1 4919336 D 458817 CDS YP_001676238.1 167625944 5902728 4921006..4922097 1 NC_010334.1 PFAM: Radical SAM domain protein; KEGG: pmu:PM0600 putative arylsulfatase regulator; radical SAM domain-containing protein 4922097 5902728 Shal_4039 Shewanella halifaxensis HAW-EB4 radical SAM domain-containing protein YP_001676238.1 4921006 D 458817 CDS YP_001676239.1 167625945 5903135 4922116..4922886 1 NC_010334.1 KEGG: ent:Ent638_1505 protein of unknown function DUF1384; hypothetical protein 4922886 5903135 Shal_4040 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676239.1 4922116 D 458817 CDS YP_001676240.1 167625946 5903136 4922899..4924377 1 NC_010334.1 PFAM: sulfatase; KEGG: stm:STM0035 putative arylsulfatase; sulfatase 4924377 5903136 Shal_4041 Shewanella halifaxensis HAW-EB4 sulfatase YP_001676240.1 4922899 D 458817 CDS YP_001676241.1 167625947 5903055 4924847..4925851 1 NC_010334.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ppr:PBPRB1790 hypothetical ABC transporter, substrate binding protein; substrate-binding region of ABC-type glycine betaine transport system 4925851 5903055 Shal_4042 Shewanella halifaxensis HAW-EB4 substrate-binding region of ABC-type glycine betaine transport system YP_001676241.1 4924847 D 458817 CDS YP_001676242.1 167625948 5903056 4925936..4926835 1 NC_010334.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vha:VIBHAR_06563 hypothetical protein; binding-protein-dependent transport system inner membrane protein 4926835 5903056 Shal_4043 Shewanella halifaxensis HAW-EB4 binding-protein-dependent transport system inner membrane protein YP_001676242.1 4925936 D 458817 CDS YP_001676243.1 167625949 5902618 4926828..4928102 1 NC_010334.1 KEGG: vha:VIBHAR_06564 hypothetical protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 4928102 5902618 Shal_4044 Shewanella halifaxensis HAW-EB4 glycine betaine/L-proline ABC transporter ATPase YP_001676243.1 4926828 D 458817 CDS YP_001676244.1 167625950 5902619 4928102..4929352 1 NC_010334.1 KEGG: slo:Shew_3355 hypothetical protein; hypothetical protein 4929352 5902619 Shal_4045 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676244.1 4928102 D 458817 CDS YP_001676245.1 167625951 5902942 4929715..4930425 1 NC_010334.1 KEGG: sma:SAV4441 hypothetical protein; hypothetical protein 4930425 5902942 Shal_4046 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676245.1 4929715 D 458817 CDS YP_001676246.1 167625952 5902943 complement(4930941..4931324) 1 NC_010334.1 KEGG: spc:Sputcn32_3933 hypothetical protein; hypothetical protein 4931324 5902943 Shal_4047 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676246.1 4930941 R 458817 CDS YP_001676247.1 167625953 5903039 4931439..4931756 1 NC_010334.1 KEGG: spc:Sputcn32_3932 hypothetical protein; hypothetical protein 4931756 5903039 Shal_4048 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676247.1 4931439 D 458817 CDS YP_001676248.1 167625954 5903040 4932415..4932630 1 NC_010334.1 PFAM: Prophage CP4-57 regulatory; KEGG: vvy:VV0810 predicted transcriptional regulator; phage transcriptional regulator AlpA 4932630 5903040 Shal_4049 Shewanella halifaxensis HAW-EB4 phage transcriptional regulator AlpA YP_001676248.1 4932415 D 458817 CDS YP_001676249.1 167625955 5903275 complement(4932671..4933153) 1 NC_010334.1 KEGG: slo:Shew_1265 hypothetical protein; hypothetical protein 4933153 5903275 Shal_4050 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676249.1 4932671 R 458817 CDS YP_001676250.1 167625956 5903276 complement(4933858..4934694) 1 NC_010334.1 hypothetical protein 4934694 5903276 Shal_4051 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676250.1 4933858 R 458817 CDS YP_001676251.1 167625957 5902766 complement(4935054..4936508) 1 NC_010334.1 KEGG: neu:NE0256 hypothetical protein; hypothetical protein 4936508 5902766 Shal_4052 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676251.1 4935054 R 458817 CDS YP_001676252.1 167625958 5902767 4937068..4937454 1 NC_010334.1 KEGG: eba:p1D12 weak: Alr7543 protein; hypothetical protein 4937454 5902767 Shal_4053 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676252.1 4937068 D 458817 CDS YP_001676253.1 167625959 5903047 4938215..4938619 1 NC_010334.1 hypothetical protein 4938619 5903047 Shal_4054 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676253.1 4938215 D 458817 CDS YP_001676254.1 167625960 5903048 complement(4939211..4940401) 1 NC_010334.1 hypothetical protein 4940401 5903048 Shal_4055 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676254.1 4939211 R 458817 CDS YP_001676255.1 167625961 5902911 complement(4940481..4941473) 1 NC_010334.1 hypothetical protein 4941473 5902911 Shal_4056 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676255.1 4940481 R 458817 CDS YP_001676256.1 167625962 5902912 4941735..4942346 1 NC_010334.1 hypothetical protein 4942346 5902912 Shal_4057 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676256.1 4941735 D 458817 CDS YP_001676257.1 167625963 5902690 complement(4942391..4943686) 1 NC_010334.1 KEGG: pcr:Pcryo_1614 hypothetical protein; hypothetical protein 4943686 5902690 Shal_4058 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676257.1 4942391 R 458817 CDS YP_001676258.1 167625964 5902691 4943894..4944835 1 NC_010334.1 PFAM: integrase family protein; KEGG: son:SO_3884 site-specific recombinase, phage integrase family; integrase family protein 4944835 5902691 Shal_4059 Shewanella halifaxensis HAW-EB4 integrase family protein YP_001676258.1 4943894 D 458817 CDS YP_001676259.1 167625965 5903220 4944828..4946882 1 NC_010334.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: pat:Patl_0729 AAA ATPase, central region; ATPase central domain-containing protein 4946882 5903220 Shal_4060 Shewanella halifaxensis HAW-EB4 ATPase central domain-containing protein YP_001676259.1 4944828 D 458817 CDS YP_001676260.1 167625966 5903221 4946984..4947439 1 NC_010334.1 KEGG: sbl:Sbal_3560 hypothetical protein; hypothetical protein 4947439 5903221 Shal_4061 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676260.1 4946984 D 458817 CDS YP_001676261.1 167625967 5902729 4947701..4947970 1 NC_010334.1 KEGG: she:Shewmr4_3221 hypothetical protein; hypothetical protein 4947970 5902729 Shal_4062 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676261.1 4947701 D 458817 CDS YP_001676262.1 167625968 5902730 4948054..4948410 1 NC_010334.1 KEGG: she:Shewmr4_3199 hypothetical protein; hypothetical protein 4948410 5902730 Shal_4063 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676262.1 4948054 D 458817 CDS YP_001676263.1 167625969 5903182 4948538..4950130 1 NC_010334.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: par:Psyc_0401 probable C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 4950130 5903182 Shal_4064 Shewanella halifaxensis HAW-EB4 DNA-cytosine methyltransferase YP_001676263.1 4948538 D 458817 CDS YP_001676264.1 167625970 5903183 complement(4950364..4951866) 1 NC_010334.1 KEGG: par:Psyc_0402 hypothetical protein; hypothetical protein 4951866 5903183 Shal_4065 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676264.1 4950364 R 458817 CDS YP_001676265.1 167625971 5902701 complement(4951931..4953694) 1 NC_010334.1 PFAM: integrase family protein; KEGG: pat:Patl_0725 phage integrase; integrase family protein 4953694 5902701 Shal_4066 Shewanella halifaxensis HAW-EB4 integrase family protein YP_001676265.1 4951931 R 458817 CDS YP_001676266.1 167625972 5903034 complement(4954297..4955139) 1 NC_010334.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: slo:Shew_0228 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 4955139 5903034 Shal_4067 Shewanella halifaxensis HAW-EB4 uroporphyrin-III C/tetrapyrrole methyltransferase YP_001676266.1 4954297 R 458817 CDS YP_001676267.1 167625973 5902803 4955242..4957116 1 NC_010334.1 PFAM: LppC family lipoprotein; KEGG: slo:Shew_0227 LppC family lipoprotein; LppC family lipoprotein 4957116 5902803 Shal_4068 Shewanella halifaxensis HAW-EB4 LppC family lipoprotein YP_001676267.1 4955242 D 458817 CDS YP_001676268.1 167625974 5902804 4957227..4957568 1 NC_010334.1 PFAM: protein of unknown function UPF0102; KEGG: sbm:Shew185_4070 protein of unknown function UPF0102; hypothetical protein 4957568 5902804 Shal_4069 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676268.1 4957227 D 458817 CDS YP_001676269.1 167625975 5903171 4957633..4958226 1 NC_010334.1 TIGRFAM: phosphoheptose isomerase; KEGG: shw:Sputw3181_3836 phosphoheptose isomerase; phosphoheptose isomerase 4958226 5903171 Shal_4070 Shewanella halifaxensis HAW-EB4 phosphoheptose isomerase YP_001676269.1 4957633 D 458817 CDS YP_001676270.1 167625976 5903172 4958223..4958792 1 NC_010334.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: slo:Shew_0224 transport-associated; transport-associated 4958792 5903172 Shal_4071 Shewanella halifaxensis HAW-EB4 transport-associated YP_001676270.1 4958223 D 458817 CDS YP_001676271.1 167625977 5903398 complement(4958825..4959694) 1 NC_010334.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sfr:Sfri_0385 protein of unknown function DUF6, transmembrane; hypothetical protein 4959694 5903398 Shal_4072 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676271.1 4958825 R 458817 CDS YP_001676272.1 167625978 5903399 4959854..4960723 1 NC_010334.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfr:Sfri_0384 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 4960723 5903399 Shal_4073 Shewanella halifaxensis HAW-EB4 LysR family transcriptional regulator YP_001676272.1 4959854 D 458817 CDS YP_001676273.1 167625979 5902735 complement(4960801..4961811) 1 NC_010334.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 4961811 5902735 Shal_4074 Shewanella halifaxensis HAW-EB4 tryptophanyl-tRNA synthetase YP_001676273.1 4960801 R 458817 CDS YP_001676274.1 167625980 5902736 complement(4961817..4962515) 1 NC_010334.1 TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shw:Sputw3181_3841 phosphoglycolate phosphatase; phosphoglycolate phosphatase 4962515 5902736 Shal_4075 Shewanella halifaxensis HAW-EB4 phosphoglycolate phosphatase YP_001676274.1 4961817 R 458817 CDS YP_001676275.1 167625981 5902717 complement(4962519..4963193) 1 NC_010334.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: slo:Shew_0219 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 4963193 5902717 Shal_4076 Shewanella halifaxensis HAW-EB4 ribulose-phosphate 3-epimerase YP_001676275.1 4962519 R 458817 CDS YP_001676276.1 167625982 5902718 4963409..4963747 1 NC_010334.1 KEGG: slo:Shew_0218 hypothetical protein; hypothetical protein 4963747 5902718 Shal_4077 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676276.1 4963409 D 458817 CDS YP_001676277.1 167625983 5902692 4963756..4963941 1 NC_010334.1 KEGG: spc:Sputcn32_3702 hypothetical protein; hypothetical protein 4963941 5902692 Shal_4078 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676277.1 4963756 D 458817 CDS YP_001676278.1 167625984 5902693 complement(4963978..4964817) 1 NC_010334.1 KEGG: slo:Shew_0216 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 4964817 5902693 Shal_4079 Shewanella halifaxensis HAW-EB4 DNA adenine methylase YP_001676278.1 4963978 R 458817 CDS YP_001676279.1 167625985 5903083 complement(4964872..4966293) 1 NC_010334.1 PFAM: Sporulation domain protein; KEGG: slo:Shew_0215 sporulation domain protein; sporulation domain-containing protein 4966293 5903083 Shal_4080 Shewanella halifaxensis HAW-EB4 sporulation domain-containing protein YP_001676279.1 4964872 R 458817 CDS YP_001676280.1 167625986 5903084 complement(4966454..4967533) 1 NC_010334.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 4967533 aroB 5903084 aroB Shewanella halifaxensis HAW-EB4 3-dehydroquinate synthase YP_001676280.1 4966454 R 458817 CDS YP_001676281.1 167625987 5903053 complement(4967537..4968052) 1 NC_010334.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 4968052 aroK 5903053 aroK Shewanella halifaxensis HAW-EB4 shikimate kinase I YP_001676281.1 4967537 R 458817 CDS YP_001676282.1 167625988 5903054 complement(4968267..4970333) 1 NC_010334.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: slo:Shew_0212 type IV pilus secretin PilQ; type IV pilus secretin PilQ 4970333 5903054 Shal_4083 Shewanella halifaxensis HAW-EB4 type IV pilus secretin PilQ YP_001676282.1 4968267 R 458817 CDS YP_001676283.1 167625989 5902831 complement(4970340..4970858) 1 NC_010334.1 PFAM: Pilus assembly protein PilP; KEGG: sbm:Shew185_4086 pilus assembly protein PilP; pilus assembly protein PilP 4970858 5902831 Shal_4084 Shewanella halifaxensis HAW-EB4 pilus assembly protein PilP YP_001676283.1 4970340 R 458817 CDS YP_001676284.1 167625990 5902832 complement(4970855..4971475) 1 NC_010334.1 PFAM: Pilus assembly protein PilO; KEGG: slo:Shew_0210 pilus assembly protein, PilO; pilus assembly protein PilO 4971475 5902832 Shal_4085 Shewanella halifaxensis HAW-EB4 pilus assembly protein PilO YP_001676284.1 4970855 R 458817 CDS YP_001676285.1 167625991 5903141 complement(4971472..4972053) 1 NC_010334.1 PFAM: Fimbrial assembly family protein; KEGG: slo:Shew_0209 fimbrial assembly family protein; fimbrial assembly family protein 4972053 5903141 Shal_4086 Shewanella halifaxensis HAW-EB4 fimbrial assembly family protein YP_001676285.1 4971472 R 458817 CDS YP_001676286.1 167625992 5903142 complement(4972041..4973120) 1 NC_010334.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: slo:Shew_0208 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 4973120 5903142 Shal_4087 Shewanella halifaxensis HAW-EB4 type IV pilus assembly protein PilM YP_001676286.1 4972041 R 458817 CDS YP_001676287.1 167625993 5902721 4973553..4976105 1 NC_010334.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: sbm:Shew185_4090 penicillin-binding protein, 1A family; 1A family penicillin-binding protein 4976105 5902721 Shal_4088 Shewanella halifaxensis HAW-EB4 1A family penicillin-binding protein YP_001676287.1 4973553 D 458817 CDS YP_001676288.1 167625994 5902722 complement(4976271..4977638) 1 NC_010334.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4977638 5902722 Shal_4089 Shewanella halifaxensis HAW-EB4 argininosuccinate lyase YP_001676288.1 4976271 R 458817 CDS YP_001676289.1 167625995 5902889 complement(4977749..4978987) 1 NC_010334.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 4978987 5902889 Shal_4090 Shewanella halifaxensis HAW-EB4 argininosuccinate synthase YP_001676289.1 4977749 R 458817 CDS YP_001676290.1 167625996 5902890 complement(4979057..4979962) 1 NC_010334.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 4979962 5902890 Shal_4091 Shewanella halifaxensis HAW-EB4 ornithine carbamoyltransferase YP_001676290.1 4979057 R 458817 CDS YP_001676291.1 167625997 5903379 complement(4979978..4980805) 1 NC_010334.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4980805 5903379 Shal_4092 Shewanella halifaxensis HAW-EB4 acetylglutamate kinase YP_001676291.1 4979978 R 458817 CDS YP_001676292.1 167625998 5903380 complement(4980818..4981810) 1 NC_010334.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 4981810 argC 5903380 argC Shewanella halifaxensis HAW-EB4 N-acetyl-gamma-glutamyl-phosphate reductase YP_001676292.1 4980818 R 458817 CDS YP_001676293.1 167625999 5904234 4982086..4983237 1 NC_010334.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 4983237 5904234 Shal_4094 Shewanella halifaxensis HAW-EB4 acetylornithine deacetylase YP_001676293.1 4982086 D 458817 CDS YP_001676294.1 167626000 5904235 4983406..4986042 1 NC_010334.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4986042 5904235 Shal_4095 Shewanella halifaxensis HAW-EB4 phosphoenolpyruvate carboxylase YP_001676294.1 4983406 D 458817 CDS YP_001676295.1 167626001 5904236 4986042..4986584 1 NC_010334.1 PFAM: protein of unknown function DUF1439; KEGG: slo:Shew_0199 protein of unknown function DUF1439; hypothetical protein 4986584 5904236 Shal_4096 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676295.1 4986042 D 458817 CDS YP_001676296.1 167626002 5904237 complement(4986662..4987936) 1 NC_010334.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: shw:Sputw3181_3863 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA 4987936 5904237 Shal_4097 Shewanella halifaxensis HAW-EB4 competence/damage-inducible protein CinA YP_001676296.1 4986662 R 458817 CDS YP_001676297.1 167626003 5903010 complement(5001080..5001676) 1 NC_010334.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: slo:Shew_0196 redoxin domain protein; redoxin domain-containing protein 5001676 5903010 Shal_4098 Shewanella halifaxensis HAW-EB4 redoxin domain-containing protein YP_001676297.1 5001080 R 458817 CDS YP_001676298.1 167626004 5902809 complement(5001673..5002140) 1 NC_010334.1 PFAM: cytochrome C biogenesis protein; KEGG: slo:Shew_0195 cytochrome c biogenesis protein; cytochrome C biogenesis protein 5002140 5902809 Shal_4099 Shewanella halifaxensis HAW-EB4 cytochrome C biogenesis protein YP_001676298.1 5001673 R 458817 CDS YP_001676299.1 167626005 5902789 complement(5002152..5002706) 1 NC_010334.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sbm:Shew185_0232 periplasmic protein thiol--disulphide oxidoreductase DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE 5002706 5902789 Shal_4100 Shewanella halifaxensis HAW-EB4 periplasmic protein thiol--disulfide oxidoreductase DsbE YP_001676299.1 5002152 R 458817 CDS YP_001676300.1 167626006 5902790 complement(5002723..5004702) 1 NC_010334.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: shm:Shewmr7_0229 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 5004702 5902790 Shal_4101 Shewanella halifaxensis HAW-EB4 cytochrome c-type biogenesis protein CcmF YP_001676300.1 5002723 R 458817 CDS YP_001676301.1 167626007 5902797 5005134..5006405 1 NC_010334.1 SMART: Tetratricopeptide domain protein; KEGG: slo:Shew_0192 TPR repeat-containing protein; tetratricopeptide domain-containing protein 5006405 5902797 Shal_4102 Shewanella halifaxensis HAW-EB4 tetratricopeptide domain-containing protein YP_001676301.1 5005134 D 458817 CDS YP_001676302.1 167626008 5902798 complement(5006613..5006906) 1 NC_010334.1 PFAM: cytochrome c class I; KEGG: sfr:Sfri_0180 cytochrome c, class I; cytochrome c class I 5006906 5902798 Shal_4103 Shewanella halifaxensis HAW-EB4 cytochrome c class I YP_001676302.1 5006613 R 458817 CDS YP_001676303.1 167626009 5902925 5007227..5007877 1 NC_010334.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 5007877 5902925 Shal_4104 Shewanella halifaxensis HAW-EB4 cytochrome c biogenesis protein CcmA YP_001676303.1 5007227 D 458817 CDS YP_001676304.1 167626010 5902926 5007887..5008573 1 NC_010334.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: sbm:Shew185_0227 heme exporter protein CcmB; heme exporter protein CcmB 5008573 5902926 Shal_4105 Shewanella halifaxensis HAW-EB4 heme exporter protein CcmB YP_001676304.1 5007887 D 458817 CDS YP_001676305.1 167626011 5903103 5008575..5009321 1 NC_010334.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: slo:Shew_0188 heme exporter protein CcmC; heme exporter protein CcmC 5009321 5903103 Shal_4106 Shewanella halifaxensis HAW-EB4 heme exporter protein CcmC YP_001676305.1 5008575 D 458817 CDS YP_001676306.1 167626012 5903104 5009321..5009518 1 NC_010334.1 PFAM: Heme exporter protein D (CcmD); KEGG: son:SO_0260 heme exporter protein CcmD; Heme exporter protein CcmD 5009518 5903104 Shal_4107 Shewanella halifaxensis HAW-EB4 Heme exporter protein CcmD YP_001676306.1 5009321 D 458817 CDS YP_001676307.1 167626013 5902666 5009518..5010006 1 NC_010334.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 5010006 5902666 Shal_4108 Shewanella halifaxensis HAW-EB4 cytochrome c-type biogenesis protein CcmE YP_001676307.1 5009518 D 458817 CDS YP_001676308.1 167626014 5902667 complement(5011467..5011859) 1 NC_010334.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 5011859 rplQ 5902667 rplQ Shewanella halifaxensis HAW-EB4 50S ribosomal protein L17 YP_001676308.1 5011467 R 458817 CDS YP_001676309.1 167626015 5902810 complement(5011899..5012888) 1 NC_010334.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 5012888 5902810 Shal_4110 Shewanella halifaxensis HAW-EB4 DNA-directed RNA polymerase subunit alpha YP_001676309.1 5011899 R 458817 CDS YP_001676310.1 167626016 5902811 complement(5012913..5013533) 1 NC_010334.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 5013533 rpsD 5902811 rpsD Shewanella halifaxensis HAW-EB4 30S ribosomal protein S4 YP_001676310.1 5012913 R 458817 CDS YP_001676311.1 167626017 5902636 complement(5013569..5013961) 1 NC_010334.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 5013961 5902636 Shal_4112 Shewanella halifaxensis HAW-EB4 30S ribosomal protein S11 YP_001676311.1 5013569 R 458817 CDS YP_001676312.1 167626018 5902637 complement(5013976..5014332) 1 NC_010334.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 5014332 rpsM 5902637 rpsM Shewanella halifaxensis HAW-EB4 30S ribosomal protein S13 YP_001676312.1 5013976 R 458817 CDS YP_001676313.1 167626019 5902948 complement(5014583..5015923) 1 NC_010334.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 5015923 secY 5902948 secY Shewanella halifaxensis HAW-EB4 preprotein translocase subunit SecY YP_001676313.1 5014583 R 458817 CDS YP_001676314.1 167626020 5902949 complement(5015931..5016365) 1 NC_010334.1 late assembly protein; 50S ribosomal protein L15 5016365 rplO 5902949 rplO Shewanella halifaxensis HAW-EB4 50S ribosomal protein L15 YP_001676314.1 5015931 R 458817 CDS YP_001676315.1 167626021 5902927 complement(5016367..5016552) 1 NC_010334.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 5016552 rpmD 5902927 rpmD Shewanella halifaxensis HAW-EB4 50S ribosomal protein L30 YP_001676315.1 5016367 R 458817 CDS YP_001676316.1 167626022 5902928 complement(5016559..5017065) 1 NC_010334.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 5017065 rpsE 5902928 rpsE Shewanella halifaxensis HAW-EB4 30S ribosomal protein S5 YP_001676316.1 5016559 R 458817 CDS YP_001676317.1 167626023 5903061 complement(5017079..5017429) 1 NC_010334.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 5017429 rplR 5903061 rplR Shewanella halifaxensis HAW-EB4 50S ribosomal protein L18 YP_001676317.1 5017079 R 458817 CDS YP_001676318.1 167626024 5903062 complement(5017441..5017971) 1 NC_010334.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 5017971 rplF 5903062 rplF Shewanella halifaxensis HAW-EB4 50S ribosomal protein L6 YP_001676318.1 5017441 R 458817 CDS YP_001676319.1 167626025 5902768 complement(5017982..5018374) 1 NC_010334.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 5018374 rpsH 5902768 rpsH Shewanella halifaxensis HAW-EB4 30S ribosomal protein S8 YP_001676319.1 5017982 R 458817 CDS YP_001676320.1 167626026 5902769 complement(5018399..5018704) 1 NC_010334.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 5018704 rpsN 5902769 rpsN Shewanella halifaxensis HAW-EB4 30S ribosomal protein S14 YP_001676320.1 5018399 R 458817 CDS YP_001676321.1 167626027 5903216 complement(5018715..5019254) 1 NC_010334.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 5019254 rplE 5903216 rplE Shewanella halifaxensis HAW-EB4 50S ribosomal protein L5 YP_001676321.1 5018715 R 458817 CDS YP_001676322.1 167626028 5903217 complement(5019268..5019582) 1 NC_010334.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 5019582 rplX 5903217 rplX Shewanella halifaxensis HAW-EB4 50S ribosomal protein L24 YP_001676322.1 5019268 R 458817 CDS YP_001676323.1 167626029 5902780 complement(5019594..5019962) 1 NC_010334.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 5019962 rplN 5902780 rplN Shewanella halifaxensis HAW-EB4 50S ribosomal protein L14 YP_001676323.1 5019594 R 458817 CDS YP_001676324.1 167626030 5902781 complement(5020143..5020391) 1 NC_010334.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 5020391 rpsQ 5902781 rpsQ Shewanella halifaxensis HAW-EB4 30S ribosomal protein S17 YP_001676324.1 5020143 R 458817 CDS YP_001676325.1 167626031 5903237 complement(5020391..5020582) 1 NC_010334.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 5020582 5903237 Shal_4126 Shewanella halifaxensis HAW-EB4 50S ribosomal protein L29 YP_001676325.1 5020391 R 458817 CDS YP_001676326.1 167626032 5903238 complement(5020582..5020992) 1 NC_010334.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 5020992 rplP 5903238 rplP Shewanella halifaxensis HAW-EB4 50S ribosomal protein L16 YP_001676326.1 5020582 R 458817 CDS YP_001676327.1 167626033 5902678 complement(5021004..5021693) 1 NC_010334.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 5021693 rpsC 5902678 rpsC Shewanella halifaxensis HAW-EB4 30S ribosomal protein S3 YP_001676327.1 5021004 R 458817 CDS YP_001676328.1 167626034 5902679 complement(5021703..5022035) 1 NC_010334.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 5022035 rplV 5902679 rplV Shewanella halifaxensis HAW-EB4 50S ribosomal protein L22 YP_001676328.1 5021703 R 458817 CDS YP_001676329.1 167626035 5903660 complement(5022051..5022287) 1 NC_010334.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: slo:Shew_0162 ribosomal protein S19; 30S ribosomal protein S19 5022287 5903660 Shal_4130 Shewanella halifaxensis HAW-EB4 30S ribosomal protein S19 YP_001676329.1 5022051 R 458817 CDS YP_001676330.1 167626036 5903661 complement(5022341..5023168) 1 NC_010334.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 5023168 rplB 5903661 rplB Shewanella halifaxensis HAW-EB4 50S ribosomal protein L2 YP_001676330.1 5022341 R 458817 CDS YP_001676331.1 167626037 5902600 complement(5023186..5023488) 1 NC_010334.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 5023488 rplW 5902600 rplW Shewanella halifaxensis HAW-EB4 50S ribosomal protein L23 YP_001676331.1 5023186 R 458817 CDS YP_001676332.1 167626038 5902601 complement(5023485..5024090) 1 NC_010334.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 5024090 rplD 5902601 rplD Shewanella halifaxensis HAW-EB4 50S ribosomal protein L4 YP_001676332.1 5023485 R 458817 CDS YP_001676333.1 167626039 5902972 complement(5024108..5024746) 1 NC_010334.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 5024746 rplC 5902972 rplC Shewanella halifaxensis HAW-EB4 50S ribosomal protein L3 YP_001676333.1 5024108 R 458817 CDS YP_001676334.1 167626040 5902973 complement(5024771..5025082) 1 NC_010334.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 5025082 rpsJ 5902973 rpsJ Shewanella halifaxensis HAW-EB4 30S ribosomal protein S10 YP_001676334.1 5024771 R 458817 CDS YP_001676335.1 167626041 5902614 complement(5025440..5026624) 1 NC_010334.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 5026624 5902614 Shal_4136 Shewanella halifaxensis HAW-EB4 elongation factor Tu YP_001676335.1 5025440 R 458817 CDS YP_001676336.1 167626042 5902615 complement(5026707..5028803) 1 NC_010334.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 5028803 5902615 Shal_4137 Shewanella halifaxensis HAW-EB4 elongation factor G YP_001676336.1 5026707 R 458817 CDS YP_001676337.1 167626043 5904480 complement(5028879..5029349) 1 NC_010334.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 5029349 5904480 Shal_4138 Shewanella halifaxensis HAW-EB4 30S ribosomal protein S7 YP_001676337.1 5028879 R 458817 CDS YP_001676338.1 167626044 5904481 complement(5029430..5029804) 1 NC_010334.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 5029804 rpsL 5904481 rpsL Shewanella halifaxensis HAW-EB4 30S ribosomal protein S12 YP_001676338.1 5029430 R 458817 CDS YP_001676339.1 167626045 5903321 complement(5029994..5034208) 1 NC_010334.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 5034208 5903321 Shal_4140 Shewanella halifaxensis HAW-EB4 DNA-directed RNA polymerase subunit beta' YP_001676339.1 5029994 R 458817 CDS YP_001676340.1 167626046 5903322 complement(5034289..5038239) 1 NC_010334.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 5038239 rpoB 5903322 rpoB Shewanella halifaxensis HAW-EB4 DNA-directed RNA polymerase subunit beta YP_001676340.1 5034289 R 458817 CDS YP_001676341.1 167626047 5902921 complement(5038561..5038926) 1 NC_010334.1 TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: sfr:Sfri_0140 ribosomal protein L7/L12; 50S ribosomal protein L7/L12 5038926 5902921 Shal_4142 Shewanella halifaxensis HAW-EB4 50S ribosomal protein L7/L12 YP_001676341.1 5038561 R 458817 CDS YP_001676342.1 167626048 5902922 complement(5038983..5039480) 1 NC_010334.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 5039480 rplJ 5902922 rplJ Shewanella halifaxensis HAW-EB4 50S ribosomal protein L10 YP_001676342.1 5038983 R 458817 CDS YP_001676343.1 167626049 5902608 complement(5039748..5040449) 1 NC_010334.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 5040449 rplA 5902608 rplA Shewanella halifaxensis HAW-EB4 50S ribosomal protein L1 YP_001676343.1 5039748 R 458817 CDS YP_001676344.1 167626050 5902609 complement(5040454..5040882) 1 NC_010334.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 5040882 rplK 5902609 rplK Shewanella halifaxensis HAW-EB4 50S ribosomal protein L11 YP_001676344.1 5040454 R 458817 CDS YP_001676345.1 167626051 5906858 complement(5041008..5041559) 1 NC_010334.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: slo:Shew_0146 NusG antitermination factor; NusG antitermination factor 5041559 5906858 Shal_4146 Shewanella halifaxensis HAW-EB4 NusG antitermination factor YP_001676345.1 5041008 R 458817 CDS YP_001676346.1 167626052 5906859 complement(5041569..5041940) 1 NC_010334.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 5041940 secE 5906859 secE Shewanella halifaxensis HAW-EB4 preprotein translocase subunit SecE YP_001676346.1 5041569 R 458817 CDS YP_001676347.1 167626053 5906762 complement(5042228..5043412) 1 NC_010334.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 5043412 5906762 Shal_4148 Shewanella halifaxensis HAW-EB4 elongation factor Tu YP_001676347.1 5042228 R 458817 CDS YP_001676348.1 167626054 5906668 5044122..5045072 1 NC_010334.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 5045072 5906668 Shal_4149 Shewanella halifaxensis HAW-EB4 pantothenate kinase YP_001676348.1 5044122 D 458817 CDS YP_001676349.1 167626055 5906593 complement(5045117..5046079) 1 NC_010334.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 5046079 5906593 Shal_4150 Shewanella halifaxensis HAW-EB4 biotin--protein ligase YP_001676349.1 5045117 R 458817 CDS YP_001676350.1 167626056 5906594 complement(5046081..5047106) 1 NC_010334.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 5047106 murB 5906594 murB Shewanella halifaxensis HAW-EB4 UDP-N-acetylenolpyruvoylglucosamine reductase YP_001676350.1 5046081 R 458817 CDS YP_001676351.1 167626057 5906364 5053780..5054241 1 NC_010334.1 PFAM: RNP-1 like RNA-binding protein; KEGG: slo:Shew_0140 RNP-1-like RNA-binding protein; RNP-1 like RNA-binding protein 5054241 5906364 Shal_4152 Shewanella halifaxensis HAW-EB4 RNP-1 like RNA-binding protein YP_001676351.1 5053780 D 458817 CDS YP_001676352.1 167626058 5906259 complement(5054252..5055052) 1 NC_010334.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 5055052 5906259 Shal_4153 Shewanella halifaxensis HAW-EB4 glutamate racemase YP_001676352.1 5054252 R 458817 CDS YP_001676353.1 167626059 5906196 5055249..5056346 1 NC_010334.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 5056346 5906196 Shal_4154 Shewanella halifaxensis HAW-EB4 tRNA (uracil-5-)-methyltransferase YP_001676353.1 5055249 D 458817 CDS YP_001676354.1 167626060 5906197 complement(5056491..5057168) 1 NC_010334.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 5057168 5906197 Shal_4155 Shewanella halifaxensis HAW-EB4 DNA-binding transcriptional repressor FabR YP_001676354.1 5056491 R 458817 CDS YP_001676355.1 167626061 5906012 5057246..5058352 1 NC_010334.1 PFAM: fatty acid desaturase; KEGG: shw:Sputw3181_3679 stearoyl-CoA 9-desaturase; stearoyl-CoA 9-desaturase 5058352 5906012 Shal_4156 Shewanella halifaxensis HAW-EB4 stearoyl-CoA 9-desaturase YP_001676355.1 5057246 D 458817 CDS YP_001676356.1 167626062 5906013 5058505..5059584 1 NC_010334.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 5059584 5906013 Shal_4157 Shewanella halifaxensis HAW-EB4 selenophosphate synthetase YP_001676356.1 5058505 D 458817 CDS YP_001676357.1 167626063 5905291 5059584..5060681 1 NC_010334.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 5060681 5905291 Shal_4158 Shewanella halifaxensis HAW-EB4 tRNA 2-selenouridine synthase YP_001676357.1 5059584 D 458817 CDS YP_001676358.1 167626064 5905292 complement(5060689..5062374) 1 NC_010334.1 PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_0173 phospholipid/glycerol acyltransferase; major facilitator transporter 5062374 5905292 Shal_4159 Shewanella halifaxensis HAW-EB4 major facilitator transporter YP_001676358.1 5060689 R 458817 CDS YP_001676359.1 167626065 5904799 complement(5062380..5062841) 1 NC_010334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_0131 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5062841 5904799 Shal_4160 Shewanella halifaxensis HAW-EB4 N-acetyltransferase GCN5 YP_001676359.1 5062380 R 458817 CDS YP_001676360.1 167626066 5904800 complement(5062834..5063646) 1 NC_010334.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: sbl:Sbal_4187 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 5063646 5904800 Shal_4161 Shewanella halifaxensis HAW-EB4 3'(2'),5'-bisphosphate nucleotidase YP_001676360.1 5062834 R 458817 CDS YP_001676361.1 167626067 5904685 complement(5063690..5064250) 1 NC_010334.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 5064250 nudE 5904685 nudE Shewanella halifaxensis HAW-EB4 ADP-ribose diphosphatase NudE YP_001676361.1 5063690 R 458817 CDS YP_001676362.1 167626068 5904686 5064343..5065011 1 NC_010334.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: spc:Sputcn32_3556 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase 5065011 5904686 Shal_4163 Shewanella halifaxensis HAW-EB4 HAD family hydrolase YP_001676362.1 5064343 D 458817 CDS YP_001676363.1 167626069 5903460 complement(5065067..5065810) 1 NC_010334.1 PFAM: type II secretion system protein N; KEGG: slo:Shew_3609 type II secretion system protein N; type II secretion system protein N 5065810 5903460 Shal_4164 Shewanella halifaxensis HAW-EB4 type II secretion system protein N YP_001676363.1 5065067 R 458817 CDS YP_001676364.1 167626070 5903461 complement(5065835..5066311) 1 NC_010334.1 PFAM: General secretion pathway M protein; KEGG: slo:Shew_3610 general secretion pathway M protein; general secretion pathway M protein 5066311 5903461 Shal_4165 Shewanella halifaxensis HAW-EB4 general secretion pathway M protein YP_001676364.1 5065835 R 458817 CDS YP_001676365.1 167626071 5904862 complement(5066313..5067506) 1 NC_010334.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: shm:Shewmr7_0159 general secretion pathway protein L; general secretion pathway protein L 5067506 5904862 Shal_4166 Shewanella halifaxensis HAW-EB4 general secretion pathway protein L YP_001676365.1 5066313 R 458817 CDS YP_001676366.1 167626072 5904863 complement(5067553..5068533) 1 NC_010334.1 PFAM: General secretion pathway protein K; KEGG: slo:Shew_3612 general secretion pathway protein K; general secretion pathway protein K 5068533 5904863 Shal_4167 Shewanella halifaxensis HAW-EB4 general secretion pathway protein K YP_001676366.1 5067553 R 458817 CDS YP_001676367.1 167626073 5906785 complement(5068536..5069279) 1 NC_010334.1 TIGRFAM: general secretion pathway protein J; KEGG: shn:Shewana3_0157 general secretion pathway protein J; general secretion pathway protein J 5069279 5906785 Shal_4168 Shewanella halifaxensis HAW-EB4 general secretion pathway protein J YP_001676367.1 5068536 R 458817 CDS YP_001676368.1 167626074 5906786 complement(5069260..5069637) 1 NC_010334.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: slo:Shew_3614 general secretion pathway protein I; general secretion pathway protein I 5069637 5906786 Shal_4169 Shewanella halifaxensis HAW-EB4 general secretion pathway protein I YP_001676368.1 5069260 R 458817 CDS YP_001676369.1 167626075 5905037 complement(5069634..5070266) 1 NC_010334.1 TIGRFAM: general secretion pathway protein H; KEGG: slo:Shew_3615 general secretion pathway protein H; general secretion pathway protein H 5070266 5905037 Shal_4170 Shewanella halifaxensis HAW-EB4 general secretion pathway protein H YP_001676369.1 5069634 R 458817 CDS YP_001676370.1 167626076 5905038 complement(5070229..5070663) 1 NC_010334.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: slo:Shew_3616 general secretion pathway protein G; general secretion pathway protein G 5070663 5905038 Shal_4171 Shewanella halifaxensis HAW-EB4 general secretion pathway protein G YP_001676370.1 5070229 R 458817 CDS YP_001676371.1 167626077 5904887 complement(5070730..5071953) 1 NC_010334.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: slo:Shew_3617 general secretion pathway protein F; general secretion pathway protein F 5071953 5904887 Shal_4172 Shewanella halifaxensis HAW-EB4 general secretion pathway protein F YP_001676371.1 5070730 R 458817 CDS YP_001676372.1 167626078 5904888 complement(5071956..5073527) 1 NC_010334.1 KEGG: slo:Shew_3618 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E 5073527 5904888 Shal_4173 Shewanella halifaxensis HAW-EB4 general secretory pathway protein E YP_001676372.1 5071956 R 458817 CDS YP_001676373.1 167626079 5904559 complement(5073520..5075682) 1 NC_010334.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: slo:Shew_3619 general secretion pathway protein D; general secretion pathway protein D 5075682 5904559 Shal_4174 Shewanella halifaxensis HAW-EB4 general secretion pathway protein D YP_001676373.1 5073520 R 458817 CDS YP_001676374.1 167626080 5904560 complement(5075764..5076681) 1 NC_010334.1 TIGRFAM: general secretion pathway protein C; KEGG: slo:Shew_3620 general secretion pathway protein C; general secretion pathway protein C 5076681 5904560 Shal_4175 Shewanella halifaxensis HAW-EB4 general secretion pathway protein C YP_001676374.1 5075764 R 458817 CDS YP_001676375.1 167626081 5905791 5076955..5077353 1 NC_010334.1 PFAM: RNA-binding S4 domain protein; KEGG: slo:Shew_3621 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 5077353 5905791 Shal_4176 Shewanella halifaxensis HAW-EB4 RNA-binding S4 domain-containing protein YP_001676375.1 5076955 D 458817 CDS YP_001676376.1 167626082 5905792 5077370..5078242 1 NC_010334.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 5078242 hslO 5905792 hslO Shewanella halifaxensis HAW-EB4 Hsp33-like chaperonin YP_001676376.1 5077370 D 458817 CDS YP_001676377.1 167626083 5904180 5078474..5080015 1 NC_010334.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 5080015 5904180 Shal_4178 Shewanella halifaxensis HAW-EB4 phosphoenolpyruvate carboxykinase YP_001676377.1 5078474 D 458817 CDS YP_001676378.1 167626084 5904181 5080325..5080747 1 NC_010334.1 KEGG: slo:Shew_3626 hypothetical protein; hypothetical protein 5080747 5904181 Shal_4179 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676378.1 5080325 D 458817 CDS YP_001676379.1 167626085 5906721 5080744..5080953 1 NC_010334.1 PFAM: helix-turn-helix domain protein; KEGG: ccr:CC_2232 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 5080953 5906721 Shal_4180 Shewanella halifaxensis HAW-EB4 XRE family transcriptional regulator YP_001676379.1 5080744 D 458817 CDS YP_001676380.1 167626086 5906722 5081171..5083012 1 NC_010334.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: sbl:Sbal_4213 peptidase M14, carboxypeptidase A; peptidase M14 carboxypeptidase A 5083012 5906722 Shal_4181 Shewanella halifaxensis HAW-EB4 peptidase M14 carboxypeptidase A YP_001676380.1 5081171 D 458817 CDS YP_001676381.1 167626087 5906099 complement(5083520..5084323) 1 NC_010334.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sbm:Shew185_0141 methyltransferase type 12; type 12 methyltransferase 5084323 5906099 Shal_4182 Shewanella halifaxensis HAW-EB4 type 12 methyltransferase YP_001676381.1 5083520 R 458817 CDS YP_001676382.1 167626088 5906100 5084727..5085482 1 NC_010334.1 KEGG: shn:Shewana3_0138 lipoprotein, putative; putative lipoprotein 5085482 5906100 Shal_4183 Shewanella halifaxensis HAW-EB4 putative lipoprotein YP_001676382.1 5084727 D 458817 CDS YP_001676383.1 167626089 5906355 5085612..5086271 1 NC_010334.1 KEGG: cps:CPS_0009 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 5086271 5906355 Shal_4184 Shewanella halifaxensis HAW-EB4 signal peptidase I YP_001676383.1 5085612 D 458817 CDS YP_001676384.1 167626090 5906356 complement(5086346..5086723) 1 NC_010334.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: she:Shewmr4_0137 excinuclease ABC, C subunit domain protein; excinuclease ABC subunit C 5086723 5906356 Shal_4185 Shewanella halifaxensis HAW-EB4 excinuclease ABC subunit C YP_001676384.1 5086346 R 458817 CDS YP_001676385.1 167626091 5905592 complement(5086723..5088897) 1 NC_010334.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: she:Shewmr4_0136 oligopeptidase B; oligopeptidase B 5088897 5905592 Shal_4186 Shewanella halifaxensis HAW-EB4 oligopeptidase B YP_001676385.1 5086723 R 458817 CDS YP_001676386.1 167626092 5905593 5089522..5090160 1 NC_010334.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 5090160 ribB 5905593 ribB Shewanella halifaxensis HAW-EB4 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001676386.1 5089522 D 458817 CDS YP_001676387.1 167626093 5906934 5090434..5093652 1 NC_010334.1 KEGG: shn:Shewana3_0133 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; Nitrate and nitrite sensing domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 5093652 5906934 Shal_4188 Shewanella halifaxensis HAW-EB4 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001676387.1 5090434 D 458817 CDS YP_001676388.1 167626094 5906935 complement(5093727..5094254) 1 NC_010334.1 PFAM: Ferritin Dps family protein; KEGG: slo:Shew_0042 ferritin, Dps family protein; ferroxidase 5094254 5906935 Shal_4189 Shewanella halifaxensis HAW-EB4 ferroxidase YP_001676388.1 5093727 R 458817 CDS YP_001676389.1 167626095 5906150 5094603..5095847 1 NC_010334.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: slo:Shew_0046 molybdenum cofactor synthesis domain protein; molybdenum cofactor synthesis domain-containing protein 5095847 5906150 Shal_4190 Shewanella halifaxensis HAW-EB4 molybdenum cofactor synthesis domain-containing protein YP_001676389.1 5094603 D 458817 CDS YP_001676390.1 167626096 5906151 5095880..5096650 1 NC_010334.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 5096650 5906151 Shal_4191 Shewanella halifaxensis HAW-EB4 molybdopterin biosynthesis protein MoeB YP_001676390.1 5095880 D 458817 CDS YP_001676391.1 167626097 5906212 complement(5096775..5097326) 1 NC_010334.1 PFAM: Ankyrin; KEGG: sbm:Shew185_0251 ankyrin; ankyrin 5097326 5906212 Shal_4192 Shewanella halifaxensis HAW-EB4 ankyrin YP_001676391.1 5096775 R 458817 CDS YP_001676392.1 167626098 5906213 complement(5097504..5099018) 1 NC_010334.1 PFAM: Catalase domain protein; KEGG: sbm:Shew185_0250 catalase; catalase 5099018 5906213 Shal_4193 Shewanella halifaxensis HAW-EB4 catalase YP_001676392.1 5097504 R 458817 CDS YP_001676393.1 167626099 5906531 5099444..5100310 1 NC_010334.1 PFAM: protein of unknown function DUF333; KEGG: saz:Sama_1095 conserved hypothetical protein; hypothetical protein 5100310 5906531 Shal_4194 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676393.1 5099444 D 458817 CDS YP_001676394.1 167626100 5906532 complement(5100370..5101143) 1 NC_010334.1 hypothetical protein 5101143 5906532 Shal_4195 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676394.1 5100370 R 458817 CDS YP_001676395.1 167626101 5904801 complement(5101146..5101625) 1 NC_010334.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_3947 ECF sigma factor PrtI; ECF subfamily RNA polymerase sigma-24 factor 5101625 5904801 Shal_4196 Shewanella halifaxensis HAW-EB4 ECF subfamily RNA polymerase sigma-24 factor YP_001676395.1 5101146 R 458817 CDS YP_001676396.1 167626102 5904802 complement(5101632..5102411) 1 NC_010334.1 KEGG: cvi:CV_3514 hypothetical protein; hypothetical protein 5102411 5904802 Shal_4197 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676396.1 5101632 R 458817 CDS YP_001676397.1 167626103 5906636 complement(5102402..5103286) 1 NC_010334.1 PFAM: protein of unknown function DUF692; KEGG: shn:Shewana3_0975 protein of unknown function DUF692; hypothetical protein 5103286 5906636 Shal_4198 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676397.1 5102402 R 458817 CDS YP_001676398.1 167626104 5906637 complement(5103286..5103570) 1 NC_010334.1 KEGG: cps:CPS_0845 hypothetical protein; hypothetical protein 5103570 5906637 Shal_4199 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676398.1 5103286 R 458817 CDS YP_001676399.1 167626105 5906808 complement(5103713..5104936) 1 NC_010334.1 PFAM: sodium/glutamate symporter; KEGG: slo:Shew_0103 sodium/glutamate symporter; sodium/glutamate symporter 5104936 5906808 Shal_4200 Shewanella halifaxensis HAW-EB4 sodium/glutamate symporter YP_001676399.1 5103713 R 458817 CDS YP_001676400.1 167626106 5906809 complement(5105088..5105249) 1 NC_010334.1 KEGG: vha:VIBHAR_05692 hypothetical protein; hypothetical protein 5105249 5906809 Shal_4201 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676400.1 5105088 R 458817 CDS YP_001676401.1 167626107 5906557 complement(5105331..5106074) 1 NC_010334.1 PFAM: glycosyl transferase family 25; KEGG: par:Psyc_1207 probable glycosyl transferase family 25, LPS biosynthesis; glycosyl transferase family protein 5106074 5906557 Shal_4202 Shewanella halifaxensis HAW-EB4 glycosyl transferase family protein YP_001676401.1 5105331 R 458817 CDS YP_001676402.1 167626108 5906558 5106297..5107376 1 NC_010334.1 PFAM: glycosyl transferase group 1; KEGG: shn:Shewana3_4093 glycosyl transferase, group 1; group 1 glycosyl transferase 5107376 5906558 Shal_4203 Shewanella halifaxensis HAW-EB4 group 1 glycosyl transferase YP_001676402.1 5106297 D 458817 CDS YP_001676403.1 167626109 5903478 5107675..5108442 1 NC_010334.1 PFAM: glycosyl transferase family 2; KEGG: spc:Sputcn32_3892 glycosyl transferase, family 2; glycosyl transferase family protein 5108442 5903478 Shal_4204 Shewanella halifaxensis HAW-EB4 glycosyl transferase family protein YP_001676403.1 5107675 D 458817 CDS YP_001676404.1 167626110 5903479 5108499..5109464 1 NC_010334.1 PFAM: polysaccharide pyruvyl transferase; KEGG: apl:APL_1030 hypothetical protein; polysaccharide pyruvyl transferase 5109464 5903479 Shal_4205 Shewanella halifaxensis HAW-EB4 polysaccharide pyruvyl transferase YP_001676404.1 5108499 D 458817 CDS YP_001676405.1 167626111 5904489 5109860..5110846 1 NC_010334.1 PFAM: glycosyl transferase family 2; KEGG: cjr:CJE1280 lipooligosaccharide biosynthesis galactosyltransferase, putative; glycosyl transferase family protein 5110846 5904489 Shal_4206 Shewanella halifaxensis HAW-EB4 glycosyl transferase family protein YP_001676405.1 5109860 D 458817 CDS YP_001676406.1 167626112 5904490 complement(5110974..5111690) 1 NC_010334.1 PFAM: glycosyl transferase family 25; KEGG: vpa:VP0210 putative Lex2B; glycosyl transferase family protein 5111690 5904490 Shal_4207 Shewanella halifaxensis HAW-EB4 glycosyl transferase family protein YP_001676406.1 5110974 R 458817 CDS YP_001676407.1 167626113 5905520 complement(5111765..5112832) 1 NC_010334.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: sbm:Shew185_4334 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 5112832 5905520 Shal_4208 Shewanella halifaxensis HAW-EB4 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_001676407.1 5111765 R 458817 CDS YP_001676408.1 167626114 5905521 complement(5112862..5113947) 1 NC_010334.1 PFAM: glycosyl transferase group 1; KEGG: sbm:Shew185_4335 glycosyl transferase group 1; group 1 glycosyl transferase 5113947 5905521 Shal_4209 Shewanella halifaxensis HAW-EB4 group 1 glycosyl transferase YP_001676408.1 5112862 R 458817 CDS YP_001676409.1 167626115 5905934 complement(5113944..5115029) 1 NC_010334.1 KEGG: sbl:Sbal_0063 hypothetical protein; hypothetical protein 5115029 5905934 Shal_4210 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676409.1 5113944 R 458817 CDS YP_001676410.1 167626116 5905935 complement(5115088..5116173) 1 NC_010334.1 PFAM: glycosyl transferase family 9; KEGG: slo:Shew_3702 glycosyl transferase, family 9; glycosyl transferase family protein 5116173 5905935 Shal_4211 Shewanella halifaxensis HAW-EB4 glycosyl transferase family protein YP_001676410.1 5115088 R 458817 CDS YP_001676411.1 167626117 5906730 5116259..5116990 1 NC_010334.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 5116990 5906730 Shal_4212 Shewanella halifaxensis HAW-EB4 3-deoxy-D-manno-octulosonic-acid kinase YP_001676411.1 5116259 D 458817 CDS YP_001676412.1 167626118 5906731 complement(5117091..5118356) 1 NC_010334.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: shw:Sputw3181_0052 three-deoxy-D-manno-octulosonic-acid transferase domain protein; 3-deoxy-D-manno-octulosonic-acid transferase 5118356 5906731 Shal_4213 Shewanella halifaxensis HAW-EB4 3-deoxy-D-manno-octulosonic-acid transferase YP_001676412.1 5117091 R 458817 CDS YP_001676413.1 167626119 5904555 5118533..5119174 1 NC_010334.1 PFAM: regulatory protein TetR; KEGG: spc:Sputcn32_3900 transcriptional regulator, TetR family; TetR family transcriptional regulator 5119174 5904555 Shal_4214 Shewanella halifaxensis HAW-EB4 TetR family transcriptional regulator YP_001676413.1 5118533 D 458817 CDS YP_001676414.1 167626120 5904556 5119422..5120618 1 NC_010334.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 5120618 5904556 Shal_4215 Shewanella halifaxensis HAW-EB4 2-amino-3-ketobutyrate coenzyme A ligase YP_001676414.1 5119422 D 458817 CDS YP_001676415.1 167626121 5903753 5120704..5121729 1 NC_010334.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 5121729 tdh 5903753 tdh Shewanella halifaxensis HAW-EB4 L-threonine 3-dehydrogenase YP_001676415.1 5120704 D 458817 CDS YP_001676416.1 167626122 5903754 5121858..5122166 1 NC_010334.1 PFAM: Rhodanese domain protein; KEGG: sfr:Sfri_3940 rhodanese domain protein; rhodanese domain-containing protein 5122166 5903754 Shal_4217 Shewanella halifaxensis HAW-EB4 rhodanese domain-containing protein YP_001676416.1 5121858 D 458817 CDS YP_001676417.1 167626123 5904170 5122269..5123108 1 NC_010334.1 PFAM: Rhomboid family protein; KEGG: slo:Shew_3712 rhomboid family protein; rhomboid family protein 5123108 5904170 Shal_4218 Shewanella halifaxensis HAW-EB4 rhomboid family protein YP_001676417.1 5122269 D 458817 CDS YP_001676418.1 167626124 5904171 complement(5123194..5123850) 1 NC_010334.1 PFAM: ThiJ/PfpI domain protein; KEGG: son:SO_4670 enhancing lycopene biosynthesis protein; isoprenoid biosynthesis protein with amidotransferase-like domain 5123850 5904171 Shal_4219 Shewanella halifaxensis HAW-EB4 isoprenoid biosynthesis protein with amidotransferase-like domain YP_001676418.1 5123194 R 458817 CDS YP_001676419.1 167626125 5904145 5124238..5126994 1 NC_010334.1 KEGG: slo:Shew_3714 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I 5126994 5904145 Shal_4220 Shewanella halifaxensis HAW-EB4 DNA polymerase I YP_001676419.1 5124238 D 458817 CDS YP_001676420.1 167626126 5904146 complement(5127766..5128446) 1 NC_010334.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 5128446 engB 5904146 engB Shewanella halifaxensis HAW-EB4 ribosome biogenesis GTP-binding protein YsxC YP_001676420.1 5127766 R 458817 CDS YP_001676421.1 167626127 5904079 5128616..5129236 1 NC_010334.1 PFAM: cytochrome c class I; KEGG: spc:Sputcn32_3908 cytochrome c, class I; cytochrome c class I 5129236 5904079 Shal_4222 Shewanella halifaxensis HAW-EB4 cytochrome c class I YP_001676421.1 5128616 D 458817 CDS YP_001676422.1 167626128 5904080 5130061..5130729 1 NC_010334.1 KEGG: slo:Shew_3717 hypothetical protein; hypothetical protein 5130729 5904080 Shal_4223 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676422.1 5130061 D 458817 CDS YP_001676423.1 167626129 5903584 5130782..5131318 1 NC_010334.1 PFAM: protein of unknown function DUF414; KEGG: slo:Shew_3718 hypothetical protein; hypothetical protein 5131318 5903584 Shal_4224 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676423.1 5130782 D 458817 CDS YP_001676424.1 167626130 5903585 5131408..5131875 1 NC_010334.1 KEGG: sbm:Shew185_4350 hypothetical protein; hypothetical protein 5131875 5903585 Shal_4225 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676424.1 5131408 D 458817 CDS YP_001676425.1 167626131 5903596 5132165..5133505 1 NC_010334.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 5133505 5903596 Shal_4226 Shewanella halifaxensis HAW-EB4 coproporphyrinogen III oxidase YP_001676425.1 5132165 D 458817 CDS YP_001676426.1 167626132 5903597 5133668..5135455 1 NC_010334.1 PFAM: protein of unknown function DUF885; KEGG: slo:Shew_3722 protein of unknown function DUF885; hypothetical protein 5135455 5903597 Shal_4227 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676426.1 5133668 D 458817 CDS YP_001676427.1 167626133 5904376 5135600..5136574 1 NC_010334.1 PFAM: alpha/beta hydrolase fold; KEGG: shn:Shewana3_4119 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 5136574 5904376 Shal_4228 Shewanella halifaxensis HAW-EB4 alpha/beta hydrolase fold protein YP_001676427.1 5135600 D 458817 CDS YP_001676428.1 167626134 5904377 complement(5136628..5138709) 1 NC_010334.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: shw:Sputw3181_0454 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA 5138709 5904377 Shal_4229 Shewanella halifaxensis HAW-EB4 flagellar biosynthesis protein FlhA YP_001676428.1 5136628 R 458817 CDS YP_001676429.1 167626135 5904279 complement(5138725..5139858) 1 NC_010334.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: sbl:Sbal_3987 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB 5139858 5904279 Shal_4230 Shewanella halifaxensis HAW-EB4 flagellar biosynthetic protein FlhB YP_001676429.1 5138725 R 458817 CDS YP_001676430.1 167626136 5904280 complement(5139855..5140553) 1 NC_010334.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: sbl:Sbal_3986 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR 5140553 5904280 Shal_4231 Shewanella halifaxensis HAW-EB4 flagellar biosynthetic protein FliR YP_001676430.1 5139855 R 458817 CDS YP_001676431.1 167626137 5903327 complement(5140783..5141052) 1 NC_010334.1 PFAM: export protein FliQ family 3; KEGG: sbl:Sbal_3985 export protein FliQ, family 3; export protein FliQ 5141052 5903327 Shal_4232 Shewanella halifaxensis HAW-EB4 export protein FliQ YP_001676431.1 5140783 R 458817 CDS YP_001676432.1 167626138 5903328 complement(5141243..5141971) 1 NC_010334.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 5141971 fliP 5903328 fliP Shewanella halifaxensis HAW-EB4 flagellar biosynthesis protein FliP YP_001676432.1 5141243 R 458817 CDS YP_001676433.1 167626139 5903386 complement(5141974..5142330) 1 NC_010334.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: shw:Sputw3181_0459 flagellar motor switch protein FliN; flagellar motor switch protein FliN 5142330 5903386 Shal_4234 Shewanella halifaxensis HAW-EB4 flagellar motor switch protein FliN YP_001676433.1 5141974 R 458817 CDS YP_001676434.1 167626140 5903387 complement(5142323..5143204) 1 NC_010334.1 KEGG: sbl:Sbal_3982 hypothetical protein; hypothetical protein 5143204 5903387 Shal_4235 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676434.1 5142323 R 458817 CDS YP_001676435.1 167626141 5904789 5143749..5144663 1 NC_010334.1 PFAM: OmpA/MotB domain protein; KEGG: vha:VIBHAR_04970 hypothetical protein; OmpA/MotB domain-containing protein 5144663 5904789 Shal_4236 Shewanella halifaxensis HAW-EB4 OmpA/MotB domain-containing protein YP_001676435.1 5143749 D 458817 CDS YP_001676436.1 167626142 5904790 5144650..5145957 1 NC_010334.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: shw:Sputw3181_0461 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 5145957 5904790 Shal_4237 Shewanella halifaxensis HAW-EB4 sigma-54 dependent trancsriptional regulator YP_001676436.1 5144650 D 458817 CDS YP_001676437.1 167626143 5904751 5145987..5146325 1 NC_010334.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: sbl:Sbal_3980 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE 5146325 5904751 Shal_4238 Shewanella halifaxensis HAW-EB4 flagellar hook-basal body complex subunit FliE YP_001676437.1 5145987 D 458817 CDS YP_001676438.1 167626144 5904752 5146405..5148123 1 NC_010334.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar MS-ring protein 5148123 fliF 5904752 fliF Shewanella halifaxensis HAW-EB4 flagellar MS-ring protein YP_001676438.1 5146405 D 458817 CDS YP_001676439.1 167626145 5904725 5148192..5149178 1 NC_010334.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 5149178 fliG 5904725 fliG Shewanella halifaxensis HAW-EB4 flagellar motor switch protein G YP_001676439.1 5148192 D 458817 CDS YP_001676440.1 167626146 5904726 5149178..5149930 1 NC_010334.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 5149930 fliH 5904726 fliH Shewanella halifaxensis HAW-EB4 flagellar assembly protein H YP_001676440.1 5149178 D 458817 CDS YP_001676441.1 167626147 5904695 5149920..5151260 1 NC_010334.1 KEGG: sbl:Sbal_3976 ATPase, FliI/YscN family; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase; FliI/YscN family ATPase 5151260 5904695 Shal_4242 Shewanella halifaxensis HAW-EB4 FliI/YscN family ATPase YP_001676441.1 5149920 D 458817 CDS YP_001676442.1 167626148 5904696 5151310..5151732 1 NC_010334.1 KEGG: sdn:Sden_3655 hypothetical protein; hypothetical protein 5151732 5904696 Shal_4243 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676442.1 5151310 D 458817 CDS YP_001676443.1 167626149 5904639 complement(5151729..5152187) 1 NC_010334.1 KEGG: shw:Sputw3181_0468 hypothetical protein; hypothetical protein 5152187 5904639 Shal_4244 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676443.1 5151729 R 458817 CDS YP_001676444.1 167626150 5904640 complement(5152180..5152467) 1 NC_010334.1 KEGG: shw:Sputw3181_0469 hypothetical protein; hypothetical protein 5152467 5904640 Shal_4245 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676444.1 5152180 R 458817 CDS YP_001676445.1 167626151 5902821 complement(5152575..5153321) 1 NC_010334.1 KEGG: sbl:Sbal_3972 SAF domain; SAF domain-containing protein 5153321 5902821 Shal_4246 Shewanella halifaxensis HAW-EB4 SAF domain-containing protein YP_001676445.1 5152575 R 458817 CDS YP_001676446.1 167626152 5902822 5153406..5153756 1 NC_010334.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar basal body rod protein FlgB 5153756 flgB 5902822 flgB Shewanella halifaxensis HAW-EB4 flagellar basal body rod protein FlgB YP_001676446.1 5153406 D 458817 CDS YP_001676447.1 167626153 5903248 5153764..5154183 1 NC_010334.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: sdn:Sden_3650 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 5154183 5903248 Shal_4248 Shewanella halifaxensis HAW-EB4 flagellar basal-body rod protein FlgC YP_001676447.1 5153764 D 458817 CDS YP_001676448.1 167626154 5903249 5154183..5154845 1 NC_010334.1 PFAM: flagellar hook capping protein; KEGG: sdn:Sden_3649 flagellar hook capping protein; flagellar hook capping protein 5154845 5903249 Shal_4249 Shewanella halifaxensis HAW-EB4 flagellar hook capping protein YP_001676448.1 5154183 D 458817 CDS YP_001676449.1 167626155 5904534 5154868..5156076 1 NC_010334.1 the hook connects flagellar basal body to the flagellar filament; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar hook protein FlgE 5156076 flgE 5904534 flgE Shewanella halifaxensis HAW-EB4 flagellar hook protein FlgE YP_001676449.1 5154868 D 458817 CDS YP_001676450.1 167626156 5904535 5156086..5156820 1 NC_010334.1 TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; KEGG: sbl:Sbal_3967 flagellar basal-body rod protein FlgF; flagellar basal-body rod protein FlgF 5156820 5904535 Shal_4251 Shewanella halifaxensis HAW-EB4 flagellar basal-body rod protein FlgF YP_001676450.1 5156086 D 458817 CDS YP_001676451.1 167626157 5904530 5156859..5157644 1 NC_010334.1 TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: shw:Sputw3181_0476 flagellar basal-body rod protein FlgG; flagellar basal-body rod protein FlgG 5157644 5904530 Shal_4252 Shewanella halifaxensis HAW-EB4 flagellar basal-body rod protein FlgG YP_001676451.1 5156859 D 458817 CDS YP_001676452.1 167626158 5904531 5157710..5158384 1 NC_010334.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 5158384 flgH 5904531 flgH Shewanella halifaxensis HAW-EB4 flagellar basal body L-ring protein YP_001676452.1 5157710 D 458817 CDS YP_001676453.1 167626159 5904507 5158422..5159552 1 NC_010334.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 5159552 flgI 5904507 flgI Shewanella halifaxensis HAW-EB4 flagellar basal body P-ring protein YP_001676453.1 5158422 D 458817 CDS YP_001676454.1 167626160 5904508 5159552..5159965 1 NC_010334.1 FlgJ; flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; like the lateral flagella FlgJ in Vibrio parahaemolyticus this protein does not contains a C-terminal muramidase domain; peptidoglycan hydrolase 5159965 flgJ 5904508 flgJ Shewanella halifaxensis HAW-EB4 peptidoglycan hydrolase YP_001676454.1 5159552 D 458817 CDS YP_001676455.1 167626161 5904472 5160027..5161400 1 NC_010334.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sbl:Sbal_3962 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 5161400 5904472 Shal_4256 Shewanella halifaxensis HAW-EB4 flagellar hook-associated protein FlgK YP_001676455.1 5160027 D 458817 CDS YP_001676456.1 167626162 5904473 5161411..5162328 1 NC_010334.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: spc:Sputcn32_3458 flagellar hook-associated protein 3; flagellar hook-associated protein 3 5162328 5904473 Shal_4257 Shewanella halifaxensis HAW-EB4 flagellar hook-associated protein 3 YP_001676456.1 5161411 D 458817 CDS YP_001676457.1 167626163 5904433 5162380..5163414 1 NC_010334.1 KEGG: sbl:Sbal_3960 hypothetical protein; hypothetical protein 5163414 5904433 Shal_4258 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676457.1 5162380 D 458817 CDS YP_001676458.1 167626164 5904434 complement(5163452..5164627) 1 NC_010334.1 PFAM: protein of unknown function UPF0153; KEGG: sbl:Sbal_3863 flagellar biosynthesis protein, putative; hypothetical protein 5164627 5904434 Shal_4259 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676458.1 5163452 R 458817 CDS YP_001676459.1 167626165 5904400 5164876..5165691 1 NC_010334.1 PFAM: flagellin domain protein; KEGG: shw:Sputw3181_0483 flagellin domain protein; flagellin domain-containing protein 5165691 5904400 Shal_4260 Shewanella halifaxensis HAW-EB4 flagellin domain-containing protein YP_001676459.1 5164876 D 458817 CDS YP_001676460.1 167626166 5904401 5165984..5167372 1 NC_010334.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: sbl:Sbal_3955 flagellar hook-associated 2 domain protein; flagellar hook-associated 2 domain-containing protein 5167372 5904401 Shal_4261 Shewanella halifaxensis HAW-EB4 flagellar hook-associated 2 domain-containing protein YP_001676460.1 5165984 D 458817 CDS YP_001676461.1 167626167 5904398 5167387..5167767 1 NC_010334.1 PFAM: flagellar protein FliS; KEGG: shw:Sputw3181_0486 flagellar protein FliS; flagellar protein FliS 5167767 5904398 Shal_4262 Shewanella halifaxensis HAW-EB4 flagellar protein FliS YP_001676461.1 5167387 D 458817 CDS YP_001676462.1 167626168 5904399 5167736..5168062 1 NC_010334.1 KEGG: sbl:Sbal_3953 hypothetical protein; hypothetical protein 5168062 5904399 Shal_4263 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676462.1 5167736 D 458817 CDS YP_001676463.1 167626169 5904386 5168055..5169188 1 NC_010334.1 PFAM: flagellar hook-length control protein; KEGG: sbl:Sbal_3952 flagellar hook-length control protein; flagellar hook-length control protein 5169188 5904386 Shal_4264 Shewanella halifaxensis HAW-EB4 flagellar hook-length control protein YP_001676463.1 5168055 D 458817 CDS YP_001676464.1 167626170 5904387 5169203..5169658 1 NC_010334.1 PFAM: flagellar basal body-associated protein FliL; KEGG: sdn:Sden_3634 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 5169658 5904387 Shal_4265 Shewanella halifaxensis HAW-EB4 flagellar basal body-associated protein FliL YP_001676464.1 5169203 D 458817 CDS YP_001676465.1 167626171 5904367 5169670..5170392 1 NC_010334.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 5170392 fliA 5904367 fliA Shewanella halifaxensis HAW-EB4 flagellar biosynthesis sigma factor YP_001676465.1 5169670 D 458817 CDS YP_001676466.1 167626172 5904368 5170407..5171264 1 NC_010334.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: sdn:Sden_3632 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 5171264 5904368 Shal_4267 Shewanella halifaxensis HAW-EB4 MotA/TolQ/ExbB proton channel YP_001676466.1 5170407 D 458817 CDS YP_001676467.1 167626173 5904342 5171264..5172274 1 NC_010334.1 PFAM: OmpA/MotB domain protein; KEGG: sdn:Sden_3631 OmpA/MotB; OmpA/MotB domain-containing protein 5172274 5904342 Shal_4268 Shewanella halifaxensis HAW-EB4 OmpA/MotB domain-containing protein YP_001676467.1 5171264 D 458817 CDS YP_001676468.1 167626174 5904343 5172259..5172699 1 NC_010334.1 KEGG: sdn:Sden_3630 type IV pilus assembly PilZ; type IV pilus assembly PilZ 5172699 5904343 Shal_4269 Shewanella halifaxensis HAW-EB4 type IV pilus assembly PilZ YP_001676468.1 5172259 D 458817 CDS YP_001676469.1 167626175 5904315 5172744..5173028 1 NC_010334.1 KEGG: shw:Sputw3181_0494 hypothetical protein; hypothetical protein 5173028 5904315 Shal_4270 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676469.1 5172744 D 458817 CDS YP_001676470.1 167626176 5907050 complement(5179529..5180950) 1 NC_010334.1 TIGRFAM: Cytochrome c oxidase cbb3 type accessory protein FixG; KEGG: slo:Shew_3812 4Fe-4S ferredoxin, iron-sulfur binding domain protein; cytochrome c oxidase cbb3 type accessory protein FixG 5180950 5907050 Shal_4271 Shewanella halifaxensis HAW-EB4 cytochrome c oxidase cbb3 type accessory protein FixG YP_001676470.1 5179529 R 458817 CDS YP_001676471.1 167626177 5903402 5181039..5181392 1 NC_010334.1 KEGG: sbm:Shew185_4357 hypothetical protein; hypothetical protein 5181392 5903402 Shal_4272 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676471.1 5181039 D 458817 CDS YP_001676472.1 167626178 5903403 5181531..5182433 1 NC_010334.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 5182433 5903403 Shal_4273 Shewanella halifaxensis HAW-EB4 naphthoate synthase YP_001676472.1 5181531 D 458817 CDS YP_001676473.1 167626179 5903151 5182616..5182813 1 NC_010334.1 KEGG: shn:Shewana3_4124 hypothetical protein; hypothetical protein 5182813 5903151 Shal_4274 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676473.1 5182616 D 458817 CDS YP_001676474.1 167626180 5903152 complement(5182810..5184006) 1 NC_010334.1 PFAM: sodium/hydrogen exchanger; KEGG: slo:Shew_3170 sodium/hydrogen exchanger; sodium/hydrogen exchanger 5184006 5903152 Shal_4275 Shewanella halifaxensis HAW-EB4 sodium/hydrogen exchanger YP_001676474.1 5182810 R 458817 CDS YP_001676475.1 167626181 5902956 5184587..5185396 1 NC_010334.1 TIGRFAM: phosphate binding protein; KEGG: son:SO_4292 phosphate ABC transporter, periplasmic phosphate-binding protein; phosphate-binding protein 5185396 5902956 Shal_4276 Shewanella halifaxensis HAW-EB4 phosphate-binding protein YP_001676475.1 5184587 D 458817 CDS YP_001676476.1 167626182 5902957 5185475..5186380 1 NC_010334.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO_4291 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 5186380 5902957 Shal_4277 Shewanella halifaxensis HAW-EB4 phosphate ABC transporter permease YP_001676476.1 5185475 D 458817 CDS YP_001676477.1 167626183 5904779 5186380..5187237 1 NC_010334.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO_4290 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 5187237 5904779 Shal_4278 Shewanella halifaxensis HAW-EB4 phosphate ABC transporter permease YP_001676477.1 5186380 D 458817 CDS YP_001676478.1 167626184 5904780 5187251..5188000 1 NC_010334.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 5188000 5904780 Shal_4279 Shewanella halifaxensis HAW-EB4 phosphate ABC transporter ATP-binding protein YP_001676478.1 5187251 D 458817 CDS YP_001676479.1 167626185 5904879 5188251..5188532 1 NC_010334.1 KEGG: cps:CPS_2434 hypothetical protein; hypothetical protein 5188532 5904879 Shal_4280 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676479.1 5188251 D 458817 CDS YP_001676480.1 167626186 5904880 5188829..5189872 1 NC_010334.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 5189872 5904880 Shal_4281 Shewanella halifaxensis HAW-EB4 guanosine 5'-monophosphate oxidoreductase YP_001676480.1 5188829 D 458817 CDS YP_001676481.1 167626187 5904889 5190137..5190928 1 NC_010334.1 PFAM: regulatory protein LuxR; KEGG: vvu:VV2_1396 DNA-binding HTH domain-containing protein; LuxR family transcriptional regulator 5190928 5904889 Shal_4282 Shewanella halifaxensis HAW-EB4 LuxR family transcriptional regulator YP_001676481.1 5190137 D 458817 CDS YP_001676482.1 167626188 5904890 complement(5190992..5192554) 1 NC_010334.1 KEGG: cps:CPS_0108 hypothetical protein; hypothetical protein 5192554 5904890 Shal_4283 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676482.1 5190992 R 458817 CDS YP_001676483.1 167626189 5905010 5193070..5193438 1 NC_010334.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ppr:PBPRA3023 hypothetical sigma-54 modulation protein; sigma 54 modulation protein/30S ribosomal protein S30EA 5193438 5905010 Shal_4284 Shewanella halifaxensis HAW-EB4 sigma 54 modulation protein/30S ribosomal protein S30EA YP_001676483.1 5193070 D 458817 CDS YP_001676484.1 167626190 5905011 complement(5193593..5195422) 1 NC_010334.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 5195422 5905011 Shal_4285 Shewanella halifaxensis HAW-EB4 glucosamine--fructose-6-phosphate aminotransferase YP_001676484.1 5193593 R 458817 CDS YP_001676485.1 167626191 5905085 complement(5195519..5196289) 1 NC_010334.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sbm:Shew185_4361 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 5196289 5905085 Shal_4286 Shewanella halifaxensis HAW-EB4 DeoR family transcriptional regulator YP_001676485.1 5195519 R 458817 CDS YP_001676486.1 167626192 5905086 complement(5196470..5198602) 1 NC_010334.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_3841 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 5198602 5905086 Shal_4287 Shewanella halifaxensis HAW-EB4 TonB-dependent siderophore receptor YP_001676486.1 5196470 R 458817 CDS YP_001676487.1 167626193 5905155 complement(5198867..5200231) 1 NC_010334.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: slo:Shew_3842 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase 5200231 5905155 Shal_4288 Shewanella halifaxensis HAW-EB4 UDP-N-acetylglucosamine pyrophosphorylase YP_001676487.1 5198867 R 458817 CDS YP_001676488.1 167626194 5905156 complement(5200347..5200703) 1 NC_010334.1 PFAM: DsrE family protein; KEGG: slo:Shew_3843 DsrE family protein; DsrE family protein 5200703 5905156 Shal_4289 Shewanella halifaxensis HAW-EB4 DsrE family protein YP_001676488.1 5200347 R 458817 CDS YP_001676489.1 167626195 5905138 complement(5200820..5203228) 1 NC_010334.1 PFAM: protein of unknown function DUF214; KEGG: gvi:glr1418 putative ABC transport system permease protein; hypothetical protein 5203228 5905138 Shal_4290 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676489.1 5200820 R 458817 CDS YP_001676490.1 167626196 5905139 complement(5203225..5203929) 1 NC_010334.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_6481 ABC transporter related; ABC transporter-like protein 5203929 5905139 Shal_4291 Shewanella halifaxensis HAW-EB4 ABC transporter-like protein YP_001676490.1 5203225 R 458817 CDS YP_001676491.1 167626197 5905180 complement(5203944..5205173) 1 NC_010334.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sus:Acid_6482 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 5205173 5905180 Shal_4292 Shewanella halifaxensis HAW-EB4 RND family efflux transporter MFP subunit YP_001676491.1 5203944 R 458817 CDS YP_001676492.1 167626198 5905181 complement(5205743..5206171) 1 NC_010334.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 5206171 atpC 5905181 atpC Shewanella halifaxensis HAW-EB4 F0F1 ATP synthase subunit epsilon YP_001676492.1 5205743 R 458817 CDS YP_001676493.1 167626199 5905182 complement(5206203..5207579) 1 NC_010334.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 5207579 5905182 Shal_4294 Shewanella halifaxensis HAW-EB4 F0F1 ATP synthase subunit beta YP_001676493.1 5206203 R 458817 CDS YP_001676494.1 167626200 5905183 complement(5207615..5208475) 1 NC_010334.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 5208475 5905183 Shal_4295 Shewanella halifaxensis HAW-EB4 F0F1 ATP synthase subunit gamma YP_001676494.1 5207615 R 458817 CDS YP_001676495.1 167626201 5905187 complement(5208524..5210065) 1 NC_010334.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 5210065 5905187 Shal_4296 Shewanella halifaxensis HAW-EB4 F0F1 ATP synthase subunit alpha YP_001676495.1 5208524 R 458817 CDS YP_001676496.1 167626202 5905188 complement(5210080..5210613) 1 NC_010334.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 5210613 5905188 Shal_4297 Shewanella halifaxensis HAW-EB4 F0F1 ATP synthase subunit delta YP_001676496.1 5210080 R 458817 CDS YP_001676497.1 167626203 5905238 complement(5210630..5211100) 1 NC_010334.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 5211100 5905238 Shal_4298 Shewanella halifaxensis HAW-EB4 F0F1 ATP synthase subunit B YP_001676497.1 5210630 R 458817 CDS YP_001676498.1 167626204 5905239 complement(5211128..5211385) 1 NC_010334.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 5211385 5905239 Shal_4299 Shewanella halifaxensis HAW-EB4 F0F1 ATP synthase subunit C YP_001676498.1 5211128 R 458817 CDS YP_001676499.1 167626205 5905427 complement(5211418..5212248) 1 NC_010334.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 5212248 5905427 Shal_4300 Shewanella halifaxensis HAW-EB4 F0F1 ATP synthase subunit A YP_001676499.1 5211418 R 458817 CDS YP_001676500.1 167626206 5905428 complement(5212261..5212644) 1 NC_010334.1 PFAM: ATP synthase I chain; KEGG: slo:Shew_3852 ATP synthase I chain; ATP synthase I chain 5212644 5905428 Shal_4301 Shewanella halifaxensis HAW-EB4 ATP synthase I chain YP_001676500.1 5212261 R 458817 CDS YP_001676501.1 167626207 5905451 complement(5212869..5213759) 1 NC_010334.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: saz:Sama_3652 ParB family protein; parB-like partition protein 5213759 5905451 Shal_4302 Shewanella halifaxensis HAW-EB4 parB-like partition protein YP_001676501.1 5212869 R 458817 CDS YP_001676502.1 167626208 5905452 complement(5213769..5214557) 1 NC_010334.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: slo:Shew_3854 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 5214557 5905452 Shal_4303 Shewanella halifaxensis HAW-EB4 cobyrinic acid ac-diamide synthase YP_001676502.1 5213769 R 458817 CDS YP_001676503.1 167626209 5905500 complement(5214786..5215409) 1 NC_010334.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 5215409 gidB 5905500 gidB Shewanella halifaxensis HAW-EB4 16S rRNA methyltransferase GidB YP_001676503.1 5214786 R 458817 CDS YP_001676504.1 167626210 5905501 complement(5215529..5217418) 1 NC_010334.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 5217418 5905501 Shal_4305 Shewanella halifaxensis HAW-EB4 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001676504.1 5215529 R 458817 CDS YP_001676505.1 167626211 5903710 complement(5217876..5218316) 1 NC_010334.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 5218316 5903710 Shal_4306 Shewanella halifaxensis HAW-EB4 flavodoxin YP_001676505.1 5217876 R 458817 CDS YP_001676506.1 167626212 5903711 5218736..5219707 1 NC_010334.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: slo:Shew_3859 inosine/uridine-preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase 5219707 5903711 Shal_4307 Shewanella halifaxensis HAW-EB4 inosine/uridine-preferring nucleoside hydrolase YP_001676506.1 5218736 D 458817 CDS YP_001676507.1 167626213 5905670 5219943..5220890 1 NC_010334.1 PFAM: SEC-C motif domain protein; KEGG: cps:CPS_2413 SEC-C motif domain protein; SecC motif-containing protein 5220890 5905670 Shal_4308 Shewanella halifaxensis HAW-EB4 SecC motif-containing protein YP_001676507.1 5219943 D 458817 CDS YP_001676508.1 167626214 5905671 complement(5221319..5221963) 1 NC_010334.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sfr:Sfri_3118 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 5221963 5905671 Shal_4309 Shewanella halifaxensis HAW-EB4 lysine exporter protein LysE/YggA YP_001676508.1 5221319 R 458817 CDS YP_001676509.1 167626215 5905613 complement(5222712..5224073) 1 NC_010334.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 5224073 trmE 5905613 trmE Shewanella halifaxensis HAW-EB4 tRNA modification GTPase TrmE YP_001676509.1 5222712 R 458817 CDS YP_001676510.1 167626216 5905614 complement(5224189..5225823) 1 NC_010334.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: slo:Shew_3866 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein 5225823 5905614 Shal_4311 Shewanella halifaxensis HAW-EB4 60 kDa inner membrane insertion protein YP_001676510.1 5224189 R 458817 CDS YP_001676511.1 167626217 5905636 complement(5225827..5226081) 1 NC_010334.1 PFAM: protein of unknown function DUF37; KEGG: shw:Sputw3181_4093 protein of unknown function DUF37; hypothetical protein 5226081 5905636 Shal_4312 Shewanella halifaxensis HAW-EB4 hypothetical protein YP_001676511.1 5225827 R 458817 CDS YP_001676512.1 167626218 5905637 complement(5226048..5226410) 1 NC_010334.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 5226410 rnpA 5905637 rnpA Shewanella halifaxensis HAW-EB4 ribonuclease P YP_001676512.1 5226048 R 458817 CDS YP_001676513.1 167626219 5905879 complement(5226417..5226554) 1 NC_010334.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 5226554 rpmH 5905879 rpmH Shewanella halifaxensis HAW-EB4 50S ribosomal protein L34 YP_001676513.1 5226417 R 458817 CDS